Query 043748
Match_columns 120
No_of_seqs 149 out of 1042
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:34:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pfi_A Major coat protein of P 32.8 64 0.0022 17.7 3.8 26 26-51 14-39 (46)
2 1q90_L Cytochrome B6F complex 16.6 1.3E+02 0.0044 15.4 2.7 16 3-18 11-26 (32)
3 1waz_A MERF; protein structure 15.2 1E+02 0.0035 17.1 2.0 14 11-24 28-41 (46)
4 2vty_A Protein F1, F1L; BCL-2, 9.6 1.2E+02 0.0041 20.7 1.4 10 101-110 85-94 (182)
5 2nn4_A Hypothetical protein YQ 9.0 1.1E+02 0.0038 18.5 0.9 12 77-88 4-15 (72)
6 3mp7_B Preprotein translocase 8.2 3.5E+02 0.012 15.5 3.7 29 27-55 23-51 (61)
7 1rh5_B Preprotein translocase 8.2 3.9E+02 0.013 16.0 3.5 30 27-56 27-56 (74)
8 2cpt_A SKD1 protein, vacuolar 7.7 3.3E+02 0.011 17.5 2.9 19 95-113 35-53 (117)
9 2v6x_A Vacuolar protein sortin 7.6 3.6E+02 0.012 15.9 2.9 19 96-114 31-49 (85)
10 3e1r_A Centrosomal protein of 6.6 2.2E+02 0.0077 16.5 1.4 10 76-85 25-34 (58)
No 1
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=32.80 E-value=64 Score=17.71 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=22.0
Q ss_pred ccccchhchhhHHHHHHHHHHHHHHH
Q 043748 26 KKGKDFSFLGPILFTSLIILILTSFM 51 (120)
Q Consensus 26 ~tk~d~~~~g~~L~~~l~~li~~~l~ 51 (120)
..|.|.+..++....++..+.++|++
T Consensus 14 ~G~~Dm~si~~~IVGaLvil~VAGLi 39 (46)
T 1pfi_A 14 DGQGDMKAIGGYIVGALVILAVAGLI 39 (46)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45779999999999888888888875
No 2
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=16.61 E-value=1.3e+02 Score=15.40 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 043748 3 VLEALILTSAVVCSLT 18 (120)
Q Consensus 3 v~~A~~~T~~~f~~ls 18 (120)
+..|+..|.+.|.+++
T Consensus 11 L~~al~~t~~lfiGL~ 26 (32)
T 1q90_L 11 LIGALVFTLGIYLGLL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3456777777777765
No 3
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=15.16 E-value=1e+02 Score=17.13 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhh
Q 043748 11 SAVVCSLTGYTFWA 24 (120)
Q Consensus 11 ~~~f~~lsl~a~~a 24 (120)
..+|+++++||++.
T Consensus 28 La~Fi~lt~ya~~r 41 (46)
T 1waz_A 28 LAIFIGLTIYAIQR 41 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46799999999853
No 4
>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus}
Probab=9.58 E-value=1.2e+02 Score=20.75 Aligned_cols=10 Identities=40% Similarity=1.105 Sum_probs=7.4
Q ss_pred HHHHHHHHHH
Q 043748 101 YLDILNLFIS 110 (120)
Q Consensus 101 YlDiinlF~~ 110 (120)
|.|+||++-.
T Consensus 85 yidiin~ycd 94 (182)
T 2vty_A 85 YIDIINIYCD 94 (182)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 6788888753
No 5
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=9.02 E-value=1.1e+02 Score=18.55 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=9.6
Q ss_pred HHHHhHHHhhhc
Q 043748 77 IVYDTDNLIKRF 88 (120)
Q Consensus 77 i~~Dtq~i~~~~ 88 (120)
+.||.|+..|++
T Consensus 4 tlYDVqQLLK~f 15 (72)
T 2nn4_A 4 TFYDVQQLLKTF 15 (72)
T ss_dssp SHHHHHHHHHTT
T ss_pred cHHHHHHHHHHC
Confidence 468999998875
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=8.22 E-value=3.5e+02 Score=15.52 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=18.1
Q ss_pred cccchhchhhHHHHHHHHHHHHHHHHHhc
Q 043748 27 KGKDFSFLGPILFTSLIILILTSFMQMFF 55 (120)
Q Consensus 27 tk~d~~~~g~~L~~~l~~li~~~l~~~f~ 55 (120)
+|.|-.-.....-...++.++.|+++.++
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLIGMLI 51 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454445555556667777778777665
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=8.17 E-value=3.9e+02 Score=15.99 Aligned_cols=30 Identities=7% Similarity=-0.051 Sum_probs=19.2
Q ss_pred cccchhchhhHHHHHHHHHHHHHHHHHhcc
Q 043748 27 KGKDFSFLGPILFTSLIILILTSFMQMFFP 56 (120)
Q Consensus 27 tk~d~~~~g~~L~~~l~~li~~~l~~~f~~ 56 (120)
+|.|-.-.....-...++.+++|+++.++.
T Consensus 27 ~KPdr~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 27 KKPTKDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666777777787776653
No 8
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=7.70 E-value=3.3e+02 Score=17.49 Aligned_cols=19 Identities=16% Similarity=0.520 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043748 95 LASVTLYLDILNLFISILR 113 (120)
Q Consensus 95 ~~Al~LYlDiinlF~~iL~ 113 (120)
..|+.+|.+-+..|+..++
T Consensus 35 ~eAl~lY~~Aie~l~~alk 53 (117)
T 2cpt_A 35 EEALQLYQHAVQYFLHVVK 53 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3799999999999988875
No 9
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=7.63 E-value=3.6e+02 Score=15.88 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043748 96 ASVTLYLDILNLFISILRV 114 (120)
Q Consensus 96 ~Al~LYlDiinlF~~iL~i 114 (120)
.|+.+|.+-+..|+..++-
T Consensus 31 eAl~~Y~~aie~l~~a~k~ 49 (85)
T 2v6x_A 31 EAYTAYYNGLDYLMLALKY 49 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7999999999999888754
No 10
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=6.56 E-value=2.2e+02 Score=16.45 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=7.7
Q ss_pred HHHHHhHHHh
Q 043748 76 YIVYDTDNLI 85 (120)
Q Consensus 76 yi~~Dtq~i~ 85 (120)
+++||-||..
T Consensus 25 WlvydqqRea 34 (58)
T 3e1r_A 25 WLVYDQQREV 34 (58)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhHHHHHH
Confidence 6789999853
Done!