Query 043748
Match_columns 120
No_of_seqs 149 out of 1042
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 13:34:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043748.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043748hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nn4a1 a.272.1.1 (A:1-62) Hyp 12.0 36 0.0026 18.8 0.9 12 77-88 3-14 (62)
2 d1wr0a1 a.7.14.1 (A:5-81) Vacu 9.0 1.4E+02 0.01 16.1 2.9 19 96-114 29-47 (77)
3 d1wfda_ a.7.14.1 (A:) Hypothet 6.4 2E+02 0.015 16.0 2.9 18 96-113 33-50 (93)
4 d1rh5b_ f.23.28.1 (B:) Preprot 6.2 2.1E+02 0.016 15.0 3.5 29 27-55 16-44 (56)
5 d1xlya_ a.232.1.1 (A:) RNA-bin 4.8 1.9E+02 0.014 19.4 2.2 17 98-114 23-39 (232)
6 d1q90m_ f.23.25.1 (M:) PetM su 4.6 2.2E+02 0.016 13.2 2.6 15 8-22 6-20 (34)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 3.8 4.8E+02 0.035 16.0 8.7 33 64-96 100-134 (199)
8 d1sf8a_ d.271.1.1 (A:) Chapero 3.4 4.3E+02 0.032 15.1 3.0 19 76-94 85-103 (115)
9 d2bcgg2 c.3.1.3 (G:400-446) Gu 2.9 3.2E+02 0.023 13.7 1.6 9 103-111 28-36 (47)
10 d2dt5a1 a.4.5.38 (A:4-77) Tran 2.8 95 0.0069 17.3 -0.9 12 24-35 39-50 (74)
No 1
>d2nn4a1 a.272.1.1 (A:1-62) Hypothetical protein YqgQ {Bacillus subtilis [TaxId: 1423]}
Probab=12.04 E-value=36 Score=18.77 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=9.7
Q ss_pred HHHHhHHHhhhc
Q 043748 77 IVYDTDNLIKRF 88 (120)
Q Consensus 77 i~~Dtq~i~~~~ 88 (120)
+.||.|+..|++
T Consensus 3 tlYDVqQLLK~f 14 (62)
T d2nn4a1 3 TFYDVQQLLKTF 14 (62)
T ss_dssp SHHHHHHHHHTT
T ss_pred cHHHHHHHHHHC
Confidence 368999998875
No 2
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.98 E-value=1.4e+02 Score=16.12 Aligned_cols=19 Identities=16% Similarity=0.550 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043748 96 ASVTLYLDILNLFISILRV 114 (120)
Q Consensus 96 ~Al~LYlDiinlF~~iL~i 114 (120)
.|+.+|.+-++.|+..++-
T Consensus 29 ~A~~~Y~~a~~~l~~~l~~ 47 (77)
T d1wr0a1 29 EALQLYQHAVQYFLHVVKY 47 (77)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6899999999999888773
No 3
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.45 E-value=2e+02 Score=16.01 Aligned_cols=18 Identities=11% Similarity=0.523 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043748 96 ASVTLYLDILNLFISILR 113 (120)
Q Consensus 96 ~Al~LYlDiinlF~~iL~ 113 (120)
.|+.+|.+-++.++..++
T Consensus 33 eA~~~Y~~aie~l~~~~~ 50 (93)
T d1wfda_ 33 QALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 899999999999988775
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.24 E-value=2.1e+02 Score=14.98 Aligned_cols=29 Identities=7% Similarity=-0.040 Sum_probs=17.7
Q ss_pred cccchhchhhHHHHHHHHHHHHHHHHHhc
Q 043748 27 KGKDFSFLGPILFTSLIILILTSFMQMFF 55 (120)
Q Consensus 27 tk~d~~~~g~~L~~~l~~li~~~l~~~f~ 55 (120)
+|.|-.-.......+..++++.|+++.+.
T Consensus 16 ~KP~~~Ef~~ia~v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKVTALGISLLGIIGYII 44 (56)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666777777776554
No 5
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.84 E-value=1.9e+02 Score=19.45 Aligned_cols=17 Identities=47% Similarity=0.759 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043748 98 VTLYLDILNLFISILRV 114 (120)
Q Consensus 98 l~LYlDiinlF~~iL~i 114 (120)
++.|.|+.|=|+..+|=
T Consensus 23 iS~yv~~LNk~I~~lRr 39 (232)
T d1xlya_ 23 LSSYIHVLNKFISHLRR 39 (232)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57899999999988864
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.61 E-value=2.2e+02 Score=13.17 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHh
Q 043748 8 ILTSAVVCSLTGYTF 22 (120)
Q Consensus 8 ~~T~~~f~~lsl~a~ 22 (120)
..|+...+++++.++
T Consensus 6 agta~tmig~tl~gl 20 (34)
T d1q90m_ 6 AGTALTMVGMTLVGL 20 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH
Confidence 356666666666554
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.85 E-value=4.8e+02 Score=16.05 Aligned_cols=33 Identities=6% Similarity=-0.088 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhh--cCchHHHHH
Q 043748 64 VYGGISALVFCGYIVYDTDNLIKR--FTYDDYILA 96 (120)
Q Consensus 64 ~~~~~g~~iF~~yi~~Dtq~i~~~--~~~~dyi~~ 96 (120)
.......+-++..+.+..++-.++ .+++|.+..
T Consensus 100 ~i~igi~vd~~i~i~~~~~~~~~~~g~~~~eAi~~ 134 (199)
T d1iwga7 100 VLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRK 134 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 344444455777777776665433 234554433
No 8
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli [TaxId: 562]}
Probab=3.42 E-value=4.3e+02 Score=15.11 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=14.1
Q ss_pred HHHHHhHHHhhhcCchHHH
Q 043748 76 YIVYDTDNLIKRFTYDDYI 94 (120)
Q Consensus 76 yi~~Dtq~i~~~~~~~dyi 94 (120)
-.+||+-++.+++..+|+-
T Consensus 85 ~~L~d~A~l~~G~~l~Dp~ 103 (115)
T d1sf8a_ 85 ELLLDQALLAERGTLEDPN 103 (115)
T ss_dssp HHHHHHHHHHHHSCCSSHH
T ss_pred HHHHHHHHHhCCCCCCCHH
Confidence 5789999888776666654
No 9
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.90 E-value=3.2e+02 Score=13.73 Aligned_cols=9 Identities=11% Similarity=0.730 Sum_probs=5.6
Q ss_pred HHHHHHHHH
Q 043748 103 DILNLFISI 111 (120)
Q Consensus 103 DiinlF~~i 111 (120)
|+.++|-|+
T Consensus 28 Dv~diY~ri 36 (47)
T d2bcgg2 28 DVKDIYFRV 36 (47)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 10
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=2.75 E-value=95 Score=17.32 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=0.0
Q ss_pred hhccccchhchh
Q 043748 24 ASKKGKDFSFLG 35 (120)
Q Consensus 24 a~~tk~d~~~~g 35 (120)
+.|-++|++++|
T Consensus 39 ~~qVRKDls~fG 50 (74)
T d2dt5a1 39 AFQVRKDLSYFG 50 (74)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Done!