BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>043749
MSPSLGNQILGTKSLVKVPISCPCIDGIKRSESTTNNVWPADTIDSILNEFGGLVSAEQI
NSTNGSNYPTSLMIMLSCTCFNNGNNGVTSVYKSKFWVMMAELVATNGLSQSVVDPIDIL
AIPIL

High Scoring Gene Products

Symbol, full name Information P value
LYP2
LysM-containing receptor protein 2
protein from Arabidopsis thaliana 1.6e-16
LYM3
lysin-motif (LysM) domain protein 3
protein from Arabidopsis thaliana 1.2e-12

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043749
        (125 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2201143 - symbol:LYP2 "LysM-containing recepto...   210  1.6e-16   1
TAIR|locus:2204720 - symbol:LYM3 "lysin-motif (LysM) doma...   175  1.2e-12   1


>TAIR|locus:2201143 [details] [associations]
            symbol:LYP2 "LysM-containing receptor protein 2"
            species:3702 "Arabidopsis thaliana" [GO:0005886 "plasma membrane"
            evidence=ISM;IDA] [GO:0016998 "cell wall macromolecule catabolic
            process" evidence=IEA;ISS] [GO:0031225 "anchored to membrane"
            evidence=TAS] [GO:0046658 "anchored to plasma membrane"
            evidence=IDA] [GO:0006955 "immune response" evidence=IMP]
            [GO:0042834 "peptidoglycan binding" evidence=IDA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0016570
            "histone modification" evidence=RCA] [GO:0048449 "floral organ
            formation" evidence=RCA] InterPro:IPR002482 InterPro:IPR018392
            Pfam:PF01476 SMART:SM00257 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005576 GO:GO:0006955 GO:GO:0006952 GO:GO:0042834
            GO:GO:0046658 GO:GO:0016998 EMBL:AC013482 EMBL:AY057542
            IPI:IPI00535769 IPI:IPI00539017 PIR:B86352 RefSeq:NP_564153.1
            RefSeq:NP_849697.1 UniGene:At.25611 UniGene:At.48217
            ProteinModelPortal:Q93ZH0 SMR:Q93ZH0 STRING:Q93ZH0 PaxDb:Q93ZH0
            PRIDE:Q93ZH0 EnsemblPlants:AT1G21880.2 GeneID:838790
            KEGG:ath:AT1G21880 TAIR:At1g21880 eggNOG:NOG305960
            HOGENOM:HOG000083326 InParanoid:Q93ZH0 OMA:SAGCNVT PhylomeDB:Q93ZH0
            ProtClustDB:CLSN2714457 Genevestigator:Q93ZH0 GermOnline:AT1G21880
            Uniprot:Q93ZH0
        Length = 416

 Score = 210 (79.0 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 50/128 (39%), Positives = 73/128 (57%)

Query:     3 PSLGNQILGTKSLVKVPISCPCIDGIKRSESTTNNVWPADTIDSILNE-FGGLVSAEQIN 61
             P + N IL +K  +K+PI+C C+DGI++S ST     P+D + SI +  +GGLVSAEQI 
Sbjct:    79 PDVENHILPSKLFLKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADSVYGGLVSAEQIQ 138

Query:    62 STNGSNYP------TSLMIMLSCTCFNNGNNGVTSVYKSKFWVMMAELVA-TNGLSQSVV 114
               N  N P      TSL+I L C CFN  +N + +VY S     +  LV      S ++ 
Sbjct:   139 EANSVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTIT 198

Query:   115 DPIDILAI 122
             D +++ A+
Sbjct:   199 DLMNVNAM 206


>TAIR|locus:2204720 [details] [associations]
            symbol:LYM3 "lysin-motif (LysM) domain protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0005886 "plasma membrane"
            evidence=ISM;IDA] [GO:0016998 "cell wall macromolecule catabolic
            process" evidence=IEA;ISS] [GO:0031225 "anchored to membrane"
            evidence=TAS] [GO:0046658 "anchored to plasma membrane"
            evidence=IDA] [GO:0006955 "immune response" evidence=IMP]
            [GO:0042834 "peptidoglycan binding" evidence=IDA] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] InterPro:IPR002482
            InterPro:IPR018392 Pfam:PF01476 SMART:SM00257 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0006955 GO:GO:0006952 EMBL:AC010704
            GO:GO:0042834 GO:GO:0046658 GO:GO:0016998 HOGENOM:HOG000083326
            ProtClustDB:CLSN2714457 EMBL:BT010885 EMBL:AK176769 IPI:IPI00520912
            PIR:H96805 RefSeq:NP_177886.2 UniGene:At.24354
            ProteinModelPortal:Q6NPN4 SMR:Q6NPN4 PaxDb:Q6NPN4 PRIDE:Q6NPN4
            EnsemblPlants:AT1G77630.1 GeneID:844098 KEGG:ath:AT1G77630
            TAIR:At1g77630 eggNOG:NOG309651 InParanoid:Q6NPN4 OMA:YCEPASI
            PhylomeDB:Q6NPN4 Genevestigator:Q6NPN4 GermOnline:AT1G77630
            Uniprot:Q6NPN4
        Length = 423

 Score = 175 (66.7 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 45/129 (34%), Positives = 69/129 (53%)

Query:     3 PSLGNQILGTKSLVKVPISCPCIDGIKRSESTTNNVWPADTIDSILNE-FGGLVSAEQIN 61
             P + N +L  K  +K+PI+C C+DGI++S ST      +DT+ SI +  +GGLVS EQI 
Sbjct:    76 PDVENHVLPAKLFLKIPITCSCVDGIRKSLSTHYKTRTSDTLGSIADSVYGGLVSPEQIQ 135

Query:    62 STNGS------NYPTSLMIMLSCTCFNNGNNGVTSVYKSKFWVMMAELVA--TNGLSQSV 113
               N        +  T L+I L C CFN  +  + ++Y S + V   + +A      S SV
Sbjct:   136 VANSETDLSVLDVGTKLVIPLPCACFNGTDESLPALYLS-YVVRGIDTMAGIAKRFSTSV 194

Query:   114 VDPIDILAI 122
              D  ++ A+
Sbjct:   195 TDLTNVNAM 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  11 22  0.41    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  559 (59 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.54u 0.15s 11.69t   Elapsed:  00:00:00
  Total cpu time:  11.54u 0.15s 11.69t   Elapsed:  00:00:00
  Start:  Fri May 10 16:19:14 2013   End:  Fri May 10 16:19:14 2013

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