BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043749
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis
thaliana GN=LYM1 PE=1 SV=1
Length = 416
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 21/143 (14%)
Query: 3 PSLGNQILGTKSLVKVPISCPCIDGIKRSESTTNNVWPADTIDSILNE-FGGLVSAEQIN 61
P + N IL +K +K+PI+C C+DGI++S ST P+D + SI + +GGLVSAEQI
Sbjct: 79 PDVENHILPSKLFLKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADSVYGGLVSAEQIQ 138
Query: 62 STNGSNYP------TSLMIMLSCTCFNNGNNGVTSVYKS--------------KFWVMMA 101
N N P TSL+I L C CFN +N + +VY S ++ +
Sbjct: 139 EANSVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTIT 198
Query: 102 ELVATNGLSQSVVDPIDILAIPI 124
+L+ N + V DILA+P+
Sbjct: 199 DLMNVNAMGAPDVSSGDILAVPL 221
>sp|Q6NPN4|LYM3_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis
thaliana GN=LYM3 PE=1 SV=1
Length = 423
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 21/144 (14%)
Query: 3 PSLGNQILGTKSLVKVPISCPCIDGIKRSESTTNNVWPADTIDSILNE-FGGLVSAEQIN 61
P + N +L K +K+PI+C C+DGI++S ST +DT+ SI + +GGLVS EQI
Sbjct: 76 PDVENHVLPAKLFLKIPITCSCVDGIRKSLSTHYKTRTSDTLGSIADSVYGGLVSPEQIQ 135
Query: 62 STNGS------NYPTSLMIMLSCTCFNNGNNGVTSVYKS--------------KFWVMMA 101
N + T L+I L C CFN + + ++Y S +F +
Sbjct: 136 VANSETDLSVLDVGTKLVIPLPCACFNGTDESLPALYLSYVVRGIDTMAGIAKRFSTSVT 195
Query: 102 ELVATNGLSQSVVDPIDILAIPIL 125
+L N + ++P DILA+P+L
Sbjct: 196 DLTNVNAMGAPDINPGDILAVPLL 219
>sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis
thaliana GN=LYM2 PE=1 SV=1
Length = 350
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 7 NQILGTKSLVKVPISCPCIDGIKRSESTTNNVWPADTIDSILNE--FGGLVSAEQINSTN 64
+Q + +V+VPI C C +G S D I S + FGGLV+ E+I+ N
Sbjct: 80 DQRVNPNQVVRVPIHCSCSNGTGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVN 139
Query: 65 GSNYPTSLMIM------LSCTCFN-NGNNGVTSVYKSKFWVMMAELVATNG 108
P + I L C+C NG + V + K + E+ A G
Sbjct: 140 KIPDPNKIEIGQKFWIPLPCSCDKLNGEDVVHYAHVVKLGSSLGEIAAQFG 190
>sp|O71121|DPOL_RHCM6 DNA polymerase OS=Rhesus cytomegalovirus (strain 68-1) GN=UL54 PE=3
SV=1
Length = 1035
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 20 ISCPCIDGIKRSESTTNNVWPADTID-SILNEFGGLVSAEQINSTNGSNYPTSLMIMLSC 78
I C D + S+ T+ V+ + D ++ GG +AEQ + ++I +SC
Sbjct: 266 IDCDVADIMAVSDDTSWPVYRCLSFDIECMSASGGFPAAEQTDD---------IVIQISC 316
Query: 79 TCFNNGNNG 87
C+N G G
Sbjct: 317 VCYNTGGTG 325
>sp|Q8H8C7|CEBIP_ORYSJ Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica
GN=CEBIP PE=1 SV=1
Length = 356
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 4 SLGNQILGTKSLVKVPISCPCIDGIKRSES-TTNNVWPADTIDSIL-NEFGGLVSAEQIN 61
+L + + S VK+P C C + +S+ V P D +D+I N F V+ ++I
Sbjct: 80 TLSSAPVAANSTVKIPFRCRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIA 139
Query: 62 STNG------SNYPTSLMIMLSCTC------------FNNGNNGVTSVYKSKFWVMMAEL 103
+ N N +L I L C+C ++ G TS +K+ V + L
Sbjct: 140 AANNIPDPNKINVSQTLWIPLPCSCDKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTL 199
Query: 104 VATNGLSQSVVDPI-----DILAIPI 124
+ N + DP IL +P+
Sbjct: 200 LTRNKID----DPTKLQMGQILDVPL 221
>sp|B0D0P0|PRM1_LACBS Plasma membrane fusion protein PRM1 OS=Laccaria bicolor (strain
S238N-H82 / ATCC MYA-4686) GN=PRM1 PE=3 SV=2
Length = 1026
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 50 EFGGLVSAEQI-NSTNGSNYPTSLMIMLSCTCFNNGNNGVTSVYKSKFWVMMAELVATNG 108
+ L + EQ ++ NGS + + +++S T N + Y+S F+ + ELV T G
Sbjct: 86 RYMALATNEQFADAVNGSLHAARVALVVSLTAMEAIINFIIDTYRSTFFCFL-ELVVTGG 144
Query: 109 LS 110
L+
Sbjct: 145 LA 146
>sp|Q9NP60|IRPL2_HUMAN X-linked interleukin-1 receptor accessory protein-like 2 OS=Homo
sapiens GN=IL1RAPL2 PE=2 SV=1
Length = 686
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 20 ISCPCIDGIKRSESTTNNVWPAD----TIDSILNEFGGLVSAEQINSTNGSNYPTSL 72
ISCP +D K+S+ + VW + SI+ + G + +++ +G NY L
Sbjct: 160 ISCPDMDDFKKSDQEPDVVWYKECKPKMWRSIIIQKGNALLIQEVQEEDGGNYTCEL 216
>sp|Q9ERS6|IRPL2_MOUSE X-linked interleukin-1 receptor accessory protein-like 2 OS=Mus
musculus GN=Il1rapl2 PE=2 SV=1
Length = 686
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 20 ISCPCIDGIKRSESTTNNVWPAD----TIDSILNEFGGLVSAEQINSTNGSNYPTSL 72
ISCP +D K+S+ + VW + SI+ + G + +++ +G NY L
Sbjct: 160 ISCPDMDDFKKSDQEPDVVWYKECKPKMWRSIIIQKGNALLIQEVQEEDGGNYTCEL 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,298,746
Number of Sequences: 539616
Number of extensions: 1525122
Number of successful extensions: 3195
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3184
Number of HSP's gapped (non-prelim): 14
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)