Query 043749
Match_columns 125
No_of_seqs 134 out of 1150
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 13:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eby_A Chitin elicitor recepto 99.9 4.1E-26 1.4E-30 169.9 11.2 121 3-124 47-188 (212)
2 4eby_A Chitin elicitor recepto 99.8 1.5E-19 5.1E-24 134.5 6.7 90 33-124 9-127 (212)
3 2djp_A Hypothetical protein SB 99.4 6.5E-14 2.2E-18 88.1 3.6 56 12-78 3-64 (77)
4 2gu1_A Zinc peptidase; alpha/b 99.3 1E-12 3.5E-17 104.0 6.5 90 32-123 6-151 (361)
5 1e0g_A Membrane-bound lytic mu 99.3 1.2E-12 4.1E-17 74.8 4.2 42 33-76 2-47 (48)
6 2l9y_A CVNH-LYSM lectin; carbo 99.3 1.5E-12 5.2E-17 93.4 3.3 45 33-79 62-112 (167)
7 4a1k_A Putative L, D-transpept 98.6 4.2E-08 1.4E-12 69.9 4.7 41 34-76 3-48 (165)
8 2djp_A Hypothetical protein SB 98.4 3.8E-08 1.3E-12 61.4 -0.3 57 68-124 3-62 (77)
9 2gu1_A Zinc peptidase; alpha/b 98.2 4E-06 1.4E-10 66.2 7.6 42 34-77 101-153 (361)
10 1e0g_A Membrane-bound lytic mu 97.8 9.3E-06 3.2E-10 45.5 2.1 28 96-124 20-47 (48)
11 3slu_A M23 peptidase domain pr 97.4 0.00014 4.8E-09 57.7 5.0 46 30-77 11-66 (371)
12 2l9y_A CVNH-LYSM lectin; carbo 97.3 9.2E-05 3.1E-09 52.7 2.6 29 96-124 80-109 (167)
13 4a1k_A Putative L, D-transpept 93.6 0.037 1.3E-06 38.8 2.4 30 96-125 20-49 (165)
14 2lfc_A Fumarate reductase, fla 60.9 3.9 0.00013 27.9 1.8 24 37-62 91-114 (160)
15 1tc3_C Protein (TC3 transposas 52.3 12 0.00041 18.9 2.6 22 39-62 19-40 (51)
16 2glo_A Brinker CG9653-PA; prot 48.6 13 0.00045 20.6 2.4 23 38-62 18-44 (59)
17 1rr7_A Middle operon regulator 45.0 13 0.00046 24.6 2.4 46 12-62 65-111 (129)
18 1jko_C HIN recombinase, DNA-in 41.2 16 0.00055 18.7 2.0 23 38-62 18-40 (52)
19 2elh_A CG11849-PA, LD40883P; s 39.4 21 0.00071 21.4 2.5 22 39-62 36-57 (87)
20 2jrt_A Uncharacterized protein 37.5 22 0.00074 22.4 2.4 25 36-62 44-68 (95)
21 2x48_A CAG38821; archeal virus 37.1 28 0.00095 18.5 2.6 21 39-61 29-49 (55)
22 2jn6_A Protein CGL2762, transp 36.1 21 0.00072 21.6 2.1 20 41-62 23-42 (97)
23 1uhe_A Aspartate 1-decarboxyla 31.1 21 0.00072 22.8 1.5 54 59-122 6-61 (97)
24 2o8x_A Probable RNA polymerase 30.5 38 0.0013 18.6 2.5 22 39-62 29-50 (70)
25 3slu_A M23 peptidase domain pr 30.5 88 0.003 24.3 5.3 36 40-77 116-161 (371)
26 2p7v_B Sigma-70, RNA polymeras 29.2 44 0.0015 18.7 2.6 22 39-62 23-44 (68)
27 4gjz_A Lysine-specific demethy 26.1 25 0.00086 24.3 1.3 12 113-124 204-215 (235)
28 1xn7_A Hypothetical protein YH 25.8 42 0.0014 20.1 2.2 31 42-74 17-49 (78)
29 1fse_A GERE; helix-turn-helix 25.2 55 0.0019 18.1 2.6 23 38-62 23-45 (74)
30 3p42_A Predicted protein; beta 24.7 30 0.001 25.2 1.5 18 106-124 185-202 (236)
31 4he6_A Peptidase family U32; u 23.4 17 0.00058 22.1 -0.0 15 63-77 27-41 (89)
32 1ku3_A Sigma factor SIGA; heli 22.7 67 0.0023 18.1 2.6 21 40-62 29-49 (73)
33 1pqh_A Aspartate 1-decarboxyla 22.4 13 0.00045 25.4 -0.7 27 50-76 38-65 (143)
34 2jpc_A SSRB; DNA binding prote 21.7 57 0.002 17.4 2.1 23 38-62 10-32 (61)
35 1x3u_A Transcriptional regulat 21.4 71 0.0024 18.0 2.6 22 39-62 29-50 (79)
36 1pdn_C Protein (PRD paired); p 21.2 66 0.0023 19.5 2.6 22 39-62 31-52 (128)
37 3qwg_A ESX-1 secretion-associa 21.2 27 0.00093 22.7 0.7 20 41-62 59-78 (123)
38 1frr_A Ferredoxin I; electron 20.8 84 0.0029 18.7 2.9 19 34-52 13-31 (95)
39 1u78_A TC3 transposase, transp 20.7 61 0.0021 20.3 2.3 22 39-62 20-41 (141)
40 3r1f_A ESX-1 secretion-associa 20.5 29 0.00099 22.8 0.7 20 41-62 61-80 (135)
41 3t76_A VANU, transcriptional r 20.5 27 0.00091 21.2 0.5 20 40-61 64-83 (88)
42 3omt_A Uncharacterized protein 20.4 29 0.001 19.4 0.6 20 41-62 50-69 (73)
43 1je8_A Nitrate/nitrite respons 20.2 77 0.0026 18.5 2.6 23 38-62 33-55 (82)
44 3tqn_A Transcriptional regulat 20.2 75 0.0026 19.8 2.7 24 37-62 26-52 (113)
45 2rn7_A IS629 ORFA; helix, all 20.1 26 0.00087 21.6 0.3 20 41-62 30-49 (108)
No 1
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.93 E-value=4.1e-26 Score=169.92 Aligned_cols=121 Identities=16% Similarity=0.219 Sum_probs=95.0
Q ss_pred CCCC-CcccCCCCEEEEcccccCCCCCcccCceeeEEcCCCCHHHHH-HHhCCCCCHHHhhc-----cCCCCCCCEEEEe
Q 043749 3 PSLG-NQILGTKSLVKVPISCPCIDGIKRSESTTNNVWPADTIDSIL-NEFGGLVSAEQINS-----TNGSNYPTSLMIM 75 (125)
Q Consensus 3 ~~~~-~~~l~~g~~l~IP~~c~c~~~~~~~~~~~y~V~~GDTl~~IA-~~y~~~vs~~~i~~-----~~~i~~Gq~L~IP 75 (125)
|++. +..|++||.|+||.+|.|..+.......+|+|++|||||+|| ++|++++++++|+. ++.|++||+|.||
T Consensus 47 p~l~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~~~~l~~Gq~L~IP 126 (212)
T 4eby_A 47 SNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQARNPFPATNIPLSATLNVL 126 (212)
T ss_dssp TTCSCTTSCCTTCEEEEEECCEEETTTEEEEEEEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCCSCTTCCCTTCEEEEE
T ss_pred cCCCCcCccCCCCEEEEeccccccCCccccCceEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcCCCcccCCCCCEEEEc
Confidence 5664 578999999999999999755333445789999999999999 69998899999987 5689999999999
Q ss_pred cCccccCCCCCCcceeeEee--------------eCCcHHHHHHhcCCCCCCCCCCCEEEEcC
Q 043749 76 LSCTCFNNGNNGVTSVYKSK--------------FWVMMAELVATNGLSQSVVDPIDILAIPI 124 (125)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~y--------------~gvs~~~L~~~N~l~~~~l~~Gq~L~IP~ 124 (125)
..|.|.............+| ||+++++|++||++.+..+..|+ |+||.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~fgvsv~~L~~~N~~~~~~~~~g~-l~IP~ 188 (212)
T 4eby_A 127 VNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNFNSGNGI-VYVPG 188 (212)
T ss_dssp EECCCCCTTTCSSCCCEEEEECCTTCCHHHHHHHHTSCHHHHHHHSTTCCTTSCSSE-EEEEC
T ss_pred CCCcCCCcccccCCCCeEEEEECCCCcHHHHHHHHCcCHHHHHHhcCCCccCCCCCE-EEecC
Confidence 98877543211111122334 99999999999998776666666 99995
No 2
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.78 E-value=1.5e-19 Score=134.45 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=71.1
Q ss_pred ceeeEEcCCCCHHHHHHHhCCCCCH--------HHhhc-------cCCCCCCCEEEEecCccccC----------CCCCC
Q 043749 33 STTNNVWPADTIDSILNEFGGLVSA--------EQINS-------TNGSNYPTSLMIMLSCTCFN----------NGNNG 87 (125)
Q Consensus 33 ~~~y~V~~GDTl~~IA~~y~~~vs~--------~~i~~-------~~~i~~Gq~L~IP~~~~~~~----------~~~~~ 87 (125)
..+|+|++|||||+||++|| +++ ++|++ ++.|++||.|.||.+|.|.. .++.|
T Consensus 9 ~~~Y~V~~GDTL~~IA~~~~--vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~G 86 (212)
T 4eby_A 9 LASYYLENGTTLSVINQNLN--SSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQE 86 (212)
T ss_dssp EEEEECCTTCCHHHHHHHTC--CSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTTEEEEEEEEECCTT
T ss_pred eEEEEeCCCCCHHHHHHHHC--CCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCccccCceEEEecCC
Confidence 46899999999999999999 565 67765 36799999999999887752 12333
Q ss_pred cceeeEe--eeC--CcHHHHHHhcCCCCCCCCCCCEEEEcC
Q 043749 88 VTSVYKS--KFW--VMMAELVATNGLSQSVVDPIDILAIPI 124 (125)
Q Consensus 88 ~~~~~~~--y~g--vs~~~L~~~N~l~~~~l~~Gq~L~IP~ 124 (125)
++...++ .|+ +++++|++||++....|++||+|.||.
T Consensus 87 DTL~~IA~~~y~~lvt~~~L~~~N~~~~~~l~~Gq~L~IP~ 127 (212)
T 4eby_A 87 DTYERVAISNYANLTTMESLQARNPFPATNIPLSATLNVLV 127 (212)
T ss_dssp CCHHHHHHTTTTTSSCHHHHHHHCCSCTTCCCTTCEEEEEE
T ss_pred CcHHHHHHHhcCCCCCHHHHHHhcCCCcccCCCCCEEEEcC
Confidence 3222233 298 999999999997667899999999994
No 3
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=6.5e-14 Score=88.14 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=47.7
Q ss_pred CCCEEEEcccccCCCCCcccCceeeEEcCCCCHHHHHHHhCCCCCHHHhhc------cCCCCCCCEEEEecCc
Q 043749 12 TKSLVKVPISCPCIDGIKRSESTTNNVWPADTIDSILNEFGGLVSAEQINS------TNGSNYPTSLMIMLSC 78 (125)
Q Consensus 12 ~g~~l~IP~~c~c~~~~~~~~~~~y~V~~GDTl~~IA~~y~~~vs~~~i~~------~~~i~~Gq~L~IP~~~ 78 (125)
.||.|.||... .+.+|+|++|||||+||++|+ +++++|++ ++.|++||+|.||...
T Consensus 3 ~Gq~l~ip~~~---------~~~~y~V~~GDTL~~IA~~~~--~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~ 64 (77)
T 2djp_A 3 SGSSGCSPVRE---------RRLEHQLEPGDTLAGLALKYG--VTMEQIKRANRLYTNDSIFLKKTLYIPILT 64 (77)
T ss_dssp CCCCCCCCCCE---------EEEEECCCTTCCHHHHHHHHT--CCHHHHHHHHTCCCSSCGGGSSCEEEEEEC
T ss_pred CCcEeeccCCC---------CcEEEEECCCCcHHHHHHHHC--cCHHHHHHHcCCCCccccCCCCEEEECCCC
Confidence 68888888642 247899999999999999999 88998886 4689999999999753
No 4
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.35 E-value=1e-12 Score=104.02 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=64.4
Q ss_pred CceeeEEcCCCCHHHHHHHhCCCCCHHHhhc----------cCCCCCCCEEEEecCccccC---------------CCC-
Q 043749 32 ESTTNNVWPADTIDSILNEFGGLVSAEQINS----------TNGSNYPTSLMIMLSCTCFN---------------NGN- 85 (125)
Q Consensus 32 ~~~~y~V~~GDTl~~IA~~y~~~vs~~~i~~----------~~~i~~Gq~L~IP~~~~~~~---------------~~~- 85 (125)
.|..|+|++|||||+||++|| ++..+|.+ .+.|++||+|.||....... ...
T Consensus 6 ~~~~~~Vk~GDTL~~Ia~r~g--vs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~ 83 (361)
T 2gu1_A 6 KRIHYMVKVGDTLSGIFAQLG--VPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTREN 83 (361)
T ss_dssp -CEEEECCTTCCHHHHHHHTT--CCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECT
T ss_pred CceEEEECCCCcHHHHHHHcC--CCHHHHHHHHhhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecC
Confidence 478999999999999999999 88888887 15799999999996422100 000
Q ss_pred CCc----------ceeeEee--------------eCCcHHHHHHhcCCCC------CCCCCCCEEEEc
Q 043749 86 NGV----------TSVYKSK--------------FWVMMAELVATNGLSQ------SVVDPIDILAIP 123 (125)
Q Consensus 86 ~~~----------~~~~~~y--------------~gvs~~~L~~~N~l~~------~~l~~Gq~L~IP 123 (125)
.+. ......| ||+++++|++||++.. ..|++||.|.|+
T Consensus 84 ~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~ 151 (361)
T 2gu1_A 84 DGSFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDIL 151 (361)
T ss_dssp TSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEE
T ss_pred CCcceeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEE
Confidence 110 0000111 9999999999998743 469999999986
No 5
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.32 E-value=1.2e-12 Score=74.78 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=37.6
Q ss_pred ceeeEEcCCCCHHHHHHHhCCCCCHHHhhc----cCCCCCCCEEEEec
Q 043749 33 STTNNVWPADTIDSILNEFGGLVSAEQINS----TNGSNYPTSLMIML 76 (125)
Q Consensus 33 ~~~y~V~~GDTl~~IA~~y~~~vs~~~i~~----~~~i~~Gq~L~IP~ 76 (125)
+.+|+|++|||||+||++|+ +++.+|++ ++.|++||+|.||.
T Consensus 2 ~~~y~V~~GDtl~~Ia~~~~--~~~~~l~~~N~~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 2 SITYRVRKGDSLSSIAKRHG--VNIKDVMRWNSDTANLQPGDKLTLFV 47 (48)
T ss_dssp CCEEEECTTCCHHHHHHHHT--CCHHHHHHHCSCGGGCCTTEEEECCC
T ss_pred CEEEEEcCCCcHHHHHHHHC--cCHHHHHHhCCCCCcCCcCCEEEEec
Confidence 46799999999999999999 88888876 46799999999995
No 6
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.27 E-value=1.5e-12 Score=93.39 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=40.3
Q ss_pred ceeeEEcCCCCHHHHHHHhCCCCCHHHhhc------cCCCCCCCEEEEecCcc
Q 043749 33 STTNNVWPADTIDSILNEFGGLVSAEQINS------TNGSNYPTSLMIMLSCT 79 (125)
Q Consensus 33 ~~~y~V~~GDTl~~IA~~y~~~vs~~~i~~------~~~i~~Gq~L~IP~~~~ 79 (125)
..+|+||+|||||+||++|+ +++.+|++ ++.|++||+|.||....
T Consensus 62 ~~~y~V~~GDTL~~IA~~~~--~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~ 112 (167)
T 2l9y_A 62 TATVTVQQGDTLRDIGRRFD--CDFHEIARRNNIQNEDLIYPGQVLQVPTKGG 112 (167)
T ss_dssp CEEEEECTTCCHHHHHHHTT--CCHHHHHHHHTCCGGGCCCTTEEEEESCCCC
T ss_pred CceEEECCCCcHHHHHHHcC--CCHHHHHHHcCCCCcccccCCCEEEEcCCCC
Confidence 37899999999999999999 89999988 58999999999997543
No 7
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.59 E-value=4.2e-08 Score=69.90 Aligned_cols=41 Identities=27% Similarity=0.300 Sum_probs=36.1
Q ss_pred eeeEEcCCCCHHHHHHHhCCCCCHHHhhc-----cCCCCCCCEEEEec
Q 043749 34 TTNNVWPADTIDSILNEFGGLVSAEQINS-----TNGSNYPTSLMIML 76 (125)
Q Consensus 34 ~~y~V~~GDTl~~IA~~y~~~vs~~~i~~-----~~~i~~Gq~L~IP~ 76 (125)
.+|+||+||||++||++|+ +...+|++ ...+.+||+|.||.
T Consensus 3 ~~y~V~~GdtL~~IA~~f~--~g~~~l~~aNp~vd~~l~~g~~i~ip~ 48 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFR--ISTAALLQANPSLQAGLTAGQSIVIPG 48 (165)
T ss_dssp EEEECCTTCCHHHHHHHTT--CCHHHHHHHCGGGGGCCCTTCEEEETT
T ss_pred EEEEECCCCCHHHHHHHhC--CCHHHHHHhCccCCCccCCCccccCcc
Confidence 6899999999999999999 88888887 23479999999984
No 8
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=3.8e-08 Score=61.38 Aligned_cols=57 Identities=19% Similarity=0.029 Sum_probs=41.6
Q ss_pred CCCEEEEecCccc-cCCCCCCcceeeEee-eCCcHHHHHHhcCCCC-CCCCCCCEEEEcC
Q 043749 68 YPTSLMIMLSCTC-FNNGNNGVTSVYKSK-FWVMMAELVATNGLSQ-SVVDPIDILAIPI 124 (125)
Q Consensus 68 ~Gq~L~IP~~~~~-~~~~~~~~~~~~~~y-~gvs~~~L~~~N~l~~-~~l~~Gq~L~IP~ 124 (125)
.||.|.||..... .+.+..+++...++. ||+++++|++||++.+ ..|++||+|.||.
T Consensus 3 ~Gq~l~ip~~~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~ 62 (77)
T 2djp_A 3 SGSSGCSPVRERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 62 (77)
T ss_dssp CCCCCCCCCCEEEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEE
T ss_pred CCcEeeccCCCCcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECC
Confidence 6899999965321 234455553222333 9999999999999974 6799999999995
No 9
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.20 E-value=4e-06 Score=66.15 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=35.5
Q ss_pred eeeEEcCCCCHHHHHHHhCCCCCHHHhhc-----c------CCCCCCCEEEEecC
Q 043749 34 TTNNVWPADTIDSILNEFGGLVSAEQINS-----T------NGSNYPTSLMIMLS 77 (125)
Q Consensus 34 ~~y~V~~GDTl~~IA~~y~~~vs~~~i~~-----~------~~i~~Gq~L~IP~~ 77 (125)
..|+|+.|||||+||++|| ++..+|++ . ..|++||+|.|+..
T Consensus 101 ~~~~v~igdSL~~iA~~~G--vs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~~ 153 (361)
T 2gu1_A 101 ILFSGEINGSFSVSARRVG--LTSSQVANITQVMKDKIDFSRSLRAGDRFDILVK 153 (361)
T ss_dssp EEEEEESSSCHHHHHHHTT--CCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEEE
T ss_pred EEEEEEECCcHHHHHHHcC--CCHHHHHHHHHhhcccccccccCCCCCEEEEEEE
Confidence 4689999999999999999 88888876 2 46999999999864
No 10
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=97.79 E-value=9.3e-06 Score=45.48 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.7
Q ss_pred eCCcHHHHHHhcCCCCCCCCCCCEEEEcC
Q 043749 96 FWVMMAELVATNGLSQSVVDPIDILAIPI 124 (125)
Q Consensus 96 ~gvs~~~L~~~N~l~~~~l~~Gq~L~IP~ 124 (125)
||+++++|+++|+ ....|++||+|.||+
T Consensus 20 ~~~~~~~l~~~N~-~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 20 HGVNIKDVMRWNS-DTANLQPGDKLTLFV 47 (48)
T ss_dssp HTCCHHHHHHHCS-CGGGCCTTEEEECCC
T ss_pred HCcCHHHHHHhCC-CCCcCCcCCEEEEec
Confidence 9999999999999 556799999999995
No 11
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.43 E-value=0.00014 Score=57.72 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=39.0
Q ss_pred ccCceeeEEcCCCCHHHHHHHhCCCCCHHHhhc----------cCCCCCCCEEEEecC
Q 043749 30 RSESTTNNVWPADTIDSILNEFGGLVSAEQINS----------TNGSNYPTSLMIMLS 77 (125)
Q Consensus 30 ~~~~~~y~V~~GDTl~~IA~~y~~~vs~~~i~~----------~~~i~~Gq~L~IP~~ 77 (125)
...|..|+|++||||.+|-+++| ++..++.+ .+.|++||.|.+...
T Consensus 11 ~~~W~~~~V~~GDTL~~IL~r~G--ls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~ 66 (371)
T 3slu_A 11 TAYWVQEAVQPGDSLADVLARSG--MARDEIARITEKYGGEADLRHLRADQSVHVLVG 66 (371)
T ss_dssp CCEEEEEECCTTCCHHHHHHHTT--CCHHHHHHHHTTC------CCBCSSSEEEEEEC
T ss_pred CCceEEEEECCCCcHHHHHHHcC--CCHHHHHHHHHhccccCchhhCCCCCEEEEEEC
Confidence 34588999999999999999999 88777666 368999999999864
No 12
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=97.35 E-value=9.2e-05 Score=52.67 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=26.9
Q ss_pred eCCcHHHHHHhcCCCC-CCCCCCCEEEEcC
Q 043749 96 FWVMMAELVATNGLSQ-SVVDPIDILAIPI 124 (125)
Q Consensus 96 ~gvs~~~L~~~N~l~~-~~l~~Gq~L~IP~ 124 (125)
||+++.+|++||++.+ +.|+|||+|.||.
T Consensus 80 ~~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~ 109 (167)
T 2l9y_A 80 FDCDFHEIARRNNIQNEDLIYPGQVLQVPT 109 (167)
T ss_dssp TTCCHHHHHHHHTCCGGGCCCTTEEEEESC
T ss_pred cCCCHHHHHHHcCCCCcccccCCCEEEEcC
Confidence 9999999999999987 5799999999984
No 13
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=93.58 E-value=0.037 Score=38.82 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=26.7
Q ss_pred eCCcHHHHHHhcCCCCCCCCCCCEEEEcCC
Q 043749 96 FWVMMAELVATNGLSQSVVDPIDILAIPIL 125 (125)
Q Consensus 96 ~gvs~~~L~~~N~l~~~~l~~Gq~L~IP~~ 125 (125)
|+++..+|+++|...++.|.+|++|.||.+
T Consensus 20 f~~g~~~l~~aNp~vd~~l~~g~~i~ip~~ 49 (165)
T 4a1k_A 20 FRISTAALLQANPSLQAGLTAGQSIVIPGL 49 (165)
T ss_dssp TTCCHHHHHHHCGGGGGCCCTTCEEEETTC
T ss_pred hCCCHHHHHHhCccCCCccCCCccccCccC
Confidence 999999999999876667899999999853
No 14
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=60.89 E-value=3.9 Score=27.89 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEcCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 37 NVWPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 37 ~V~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
.+.++|||.++|++.| +..+.|+.
T Consensus 91 ~~~kadTleeLA~~~g--id~~~L~~ 114 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAG--IVVDELVQ 114 (160)
T ss_dssp CSEECSSHHHHHHHHT--CCHHHHHH
T ss_pred ceEecCCHHHHHHHhC--CCHHHHHH
Confidence 3568999999999999 88887776
No 15
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=52.30 E-value=12 Score=18.92 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=17.9
Q ss_pred cCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 39 WPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 39 ~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
..|-|..+||+.+| ++...+.+
T Consensus 19 ~~g~s~~~IA~~lg--is~~Tv~~ 40 (51)
T 1tc3_C 19 LLNVSLHEMSRKIS--RSRHCIRV 40 (51)
T ss_dssp HTTCCHHHHHHHHT--CCHHHHHH
T ss_pred HcCCCHHHHHHHHC--cCHHHHHH
Confidence 57899999999999 77666544
No 16
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=48.60 E-value=13 Score=20.60 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=17.9
Q ss_pred EcCCCC----HHHHHHHhCCCCCHHHhhc
Q 043749 38 VWPADT----IDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 38 V~~GDT----l~~IA~~y~~~vs~~~i~~ 62 (125)
++.|.+ +.+||++|| ++...|.+
T Consensus 18 ~~~g~s~~~~~~~vA~~~g--Is~~tl~~ 44 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYN--IHRRQIQK 44 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTT--SCHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHC--cCHHHHHH
Confidence 356778 999999999 77766644
No 17
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=45.04 E-value=13 Score=24.59 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=28.9
Q ss_pred CCCEEEEcccccCCCCCccc-CceeeEEcCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 12 TKSLVKVPISCPCIDGIKRS-ESTTNNVWPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 12 ~g~~l~IP~~c~c~~~~~~~-~~~~y~V~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
-|+.+.||-...-.-..+.. -+.-|. |.+..++|++|| +|..+|.+
T Consensus 65 gG~~iYIPk~~~~~~~~Rn~~I~~~f~---G~n~~eLArkYg--LSer~I~~ 111 (129)
T 1rr7_A 65 GGGQVYIPRGQALDSLIRDLRIWNDFN---GRNVSELTTRYG--VTFNTVYK 111 (129)
T ss_dssp CSSCCCCCCSHHHHHHHHHHHHHHHCC---SSCHHHHHHHHT--CCHHHHHH
T ss_pred CCeeEEeeCCchHHHHHHHHHHHHHhC---CCCHHHHHHHHC--CCHHHHHH
Confidence 57888888643200000100 112343 999999999999 89888876
No 18
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=41.25 E-value=16 Score=18.75 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=18.3
Q ss_pred EcCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 38 VWPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 38 V~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
+..|-|..+||+.+| ++...+.+
T Consensus 18 ~~~g~s~~~ia~~lg--vs~~Tv~r 40 (52)
T 1jko_C 18 LEKGHPRQQLAIIFG--IGVSTLYR 40 (52)
T ss_dssp HHTTCCHHHHHHTTS--CCHHHHHH
T ss_pred HHcCCCHHHHHHHHC--CCHHHHHH
Confidence 357899999999999 77766654
No 19
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=39.38 E-value=21 Score=21.43 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=18.0
Q ss_pred cCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 39 WPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 39 ~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
..|.|+.+||++|| ++...+.+
T Consensus 36 ~~g~s~~~iA~~~g--Is~sTl~r 57 (87)
T 2elh_A 36 HDGESKASVARDIG--VPESTLRG 57 (87)
T ss_dssp HHTCCHHHHHHHHT--CCHHHHHH
T ss_pred HCCCCHHHHHHHHC--cCHHHHHH
Confidence 57999999999999 77666554
No 20
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=37.52 E-value=22 Score=22.36 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.7
Q ss_pred eEEcCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 36 NNVWPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 36 y~V~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
+....+.|+.++|++|+ ++..++..
T Consensus 44 ~~~~g~~s~~e~arry~--Is~s~i~~ 68 (95)
T 2jrt_A 44 AVIHGLITEREALDRYS--LSEEEFAL 68 (95)
T ss_dssp HHHTTSSCHHHHHHHTT--CCHHHHHH
T ss_pred HHHcCCCCHHHHHHHhC--CCHHHHHH
Confidence 45556779999999999 78888877
No 21
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=37.13 E-value=28 Score=18.52 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.1
Q ss_pred cCCCCHHHHHHHhCCCCCHHHhh
Q 043749 39 WPADTIDSILNEFGGLVSAEQIN 61 (125)
Q Consensus 39 ~~GDTl~~IA~~y~~~vs~~~i~ 61 (125)
..|-|..+||+.+| ++...+.
T Consensus 29 ~~g~s~~eIA~~lg--is~~TV~ 49 (55)
T 2x48_A 29 KMGYTVQQIANALG--VSERKVR 49 (55)
T ss_dssp HTTCCHHHHHHHHT--SCHHHHH
T ss_pred HcCCCHHHHHHHHC--cCHHHHH
Confidence 57899999999999 7766553
No 22
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=36.05 E-value=21 Score=21.58 Aligned_cols=20 Identities=15% Similarity=0.493 Sum_probs=17.2
Q ss_pred CCCHHHHHHHhCCCCCHHHhhc
Q 043749 41 ADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 41 GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
|-|+.+||+.|| ++...+.+
T Consensus 23 g~s~~~ia~~~g--Is~~tl~r 42 (97)
T 2jn6_A 23 GASLQQIANDLG--INRVTLKN 42 (97)
T ss_dssp GSCHHHHHHHHT--SCHHHHHH
T ss_pred CChHHHHHHHHC--cCHHHHHH
Confidence 889999999999 77776665
No 23
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=31.06 E-value=21 Score=22.81 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=33.9
Q ss_pred HhhccCCCCCCCEEEEecCccccCCCCCCcceeeEee--eCCcHHHHHHhcCCCCCCCCCCCEEEE
Q 043749 59 QINSTNGSNYPTSLMIMLSCTCFNNGNNGVTSVYKSK--FWVMMAELVATNGLSQSVVDPIDILAI 122 (125)
Q Consensus 59 ~i~~~~~i~~Gq~L~IP~~~~~~~~~~~~~~~~~~~y--~gvs~~~L~~~N~l~~~~l~~Gq~L~I 122 (125)
+|++...|.+|+++.|--. .+|. .+.|| .|-. +-...+|+-..+..++|+.+.|
T Consensus 6 dLldaA~il~~E~V~IvNv-------nNG~--RfeTYvI~Ger-SG~I~lNGAAArl~~~GD~vII 61 (97)
T 1uhe_A 6 DLAKLAKLREGMKVEIVDV-------NNGE--RFSTYVILGKK-RGEICVNGAAARKVAIGDVVII 61 (97)
T ss_dssp HHHHHTTCCTTCEEEEEET-------TTCC--EEEEECEEECS-TTCEEEEGGGGGGCCTTCEEEE
T ss_pred HHHHhcCCCCCCEEEEEEC-------CCCc--eEEEEEEeecc-CCeEEEchHHHccCCCCCEEEE
Confidence 4555566899999988632 2332 23455 5555 5556667666666777777765
No 24
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=30.53 E-value=38 Score=18.63 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=18.3
Q ss_pred cCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 39 WPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 39 ~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
-.|-|+.+||+.+| ++...+.+
T Consensus 29 ~~g~s~~eIA~~lg--is~~tv~~ 50 (70)
T 2o8x_A 29 LLGLSYADAAAVCG--CPVGTIRS 50 (70)
T ss_dssp TSCCCHHHHHHHHT--SCHHHHHH
T ss_pred HcCCCHHHHHHHHC--cCHHHHHH
Confidence 57899999999999 77776654
No 25
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=30.47 E-value=88 Score=24.29 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHhCCCCCHHHhhc------c----CCCCCCCEEEEecC
Q 043749 40 PADTIDSILNEFGGLVSAEQINS------T----NGSNYPTSLMIMLS 77 (125)
Q Consensus 40 ~GDTl~~IA~~y~~~vs~~~i~~------~----~~i~~Gq~L~IP~~ 77 (125)
-.+|||..|++.| ++...+++ . ..|++|+.+.|...
T Consensus 116 I~~Sl~~a~~~ag--l~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~~ 161 (371)
T 3slu_A 116 VKTSARGSLARAE--VPVEIRESLSGIFAGRFSLDGLKEGDAVRLIYD 161 (371)
T ss_dssp CSSCHHHHHHHTT--CCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEEE
T ss_pred EeccHHHHHHHcC--CCHHHHHHHHHHHccCcCHHHcCCCCEEEEEEE
Confidence 3899999999999 77766665 1 25899999999864
No 26
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=29.24 E-value=44 Score=18.66 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=18.2
Q ss_pred cCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 39 WPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 39 ~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
..|-|+.+||+.+| +|...+..
T Consensus 23 ~~g~s~~eIA~~lg--is~~tV~~ 44 (68)
T 2p7v_B 23 NTDYTLEEVGKQFD--VTRERIRQ 44 (68)
T ss_dssp SSCCCHHHHHHHHT--CCHHHHHH
T ss_pred CCCCCHHHHHHHHC--cCHHHHHH
Confidence 36899999999999 77776655
No 27
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=26.12 E-value=25 Score=24.28 Aligned_cols=12 Identities=42% Similarity=0.877 Sum_probs=10.6
Q ss_pred CCCCCCEEEEcC
Q 043749 113 VVDPIDILAIPI 124 (125)
Q Consensus 113 ~l~~Gq~L~IP~ 124 (125)
.|.||+.|+||-
T Consensus 204 ~l~pGD~LyiP~ 215 (235)
T 4gjz_A 204 ILSPGEILFIPV 215 (235)
T ss_dssp EECTTCEEEECT
T ss_pred EECCCCEEEeCC
Confidence 479999999995
No 28
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=25.83 E-value=42 Score=20.11 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=21.6
Q ss_pred CCHHHHHHHhCCCCCHHHhhc--cCCCCCCCEEEE
Q 043749 42 DTIDSILNEFGGLVSAEQINS--TNGSNYPTSLMI 74 (125)
Q Consensus 42 DTl~~IA~~y~~~vs~~~i~~--~~~i~~Gq~L~I 74 (125)
=++.+||++|+ ||...|++ .....-|-...+
T Consensus 17 vsv~eLa~~l~--VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 17 MEAAQISQTLN--TPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp BCHHHHHHHTT--CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CcHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEe
Confidence 36889999999 88888877 333444555555
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=25.23 E-value=55 Score=18.13 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=18.6
Q ss_pred EcCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 38 VWPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 38 V~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
+..|-|..+||+.+| ++...+..
T Consensus 23 ~~~g~s~~eIA~~l~--is~~tV~~ 45 (74)
T 1fse_A 23 LVQDKTTKEIASELF--ISEKTVRN 45 (74)
T ss_dssp HTTTCCHHHHHHHHT--SCHHHHHH
T ss_pred HHcCCCHHHHHHHHC--CCHHHHHH
Confidence 378999999999999 77765554
No 30
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=24.71 E-value=30 Score=25.25 Aligned_cols=18 Identities=17% Similarity=-0.051 Sum_probs=14.0
Q ss_pred hcCCCCCCCCCCCEEEEcC
Q 043749 106 TNGLSQSVVDPIDILAIPI 124 (125)
Q Consensus 106 ~N~l~~~~l~~Gq~L~IP~ 124 (125)
||.- ...+.||.+|+||.
T Consensus 185 Wn~~-~~~l~PG~~I~Vp~ 202 (236)
T 3p42_A 185 WNKR-HVEPPPGSQLWLGF 202 (236)
T ss_dssp TTCC-CEECCTTCEEEECB
T ss_pred cccC-CCCCCCCCEEEEeC
Confidence 7643 44699999999994
No 31
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=23.43 E-value=17 Score=22.14 Aligned_cols=15 Identities=7% Similarity=-0.139 Sum_probs=12.4
Q ss_pred cCCCCCCCEEEEecC
Q 043749 63 TNGSNYPTSLMIMLS 77 (125)
Q Consensus 63 ~~~i~~Gq~L~IP~~ 77 (125)
.+.+.+|+.|-|-.+
T Consensus 27 rN~f~~GD~iEi~~P 41 (89)
T 4he6_A 27 RNHFRPGDEVEFFGP 41 (89)
T ss_dssp SSCBCTTCEEEEEST
T ss_pred cCCcCCCCEEEEEcC
Confidence 678999999988654
No 32
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=22.65 E-value=67 Score=18.10 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHhCCCCCHHHhhc
Q 043749 40 PADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 40 ~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
.|-|+.+||+.+| ++...+..
T Consensus 29 ~~~s~~eIA~~l~--is~~tV~~ 49 (73)
T 1ku3_A 29 REHTLEEVGAYFG--VTRERIRQ 49 (73)
T ss_dssp SCCCHHHHHHHHT--CCHHHHHH
T ss_pred CCCCHHHHHHHHC--CCHHHHHH
Confidence 6889999999999 77766554
No 33
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=22.43 E-value=13 Score=25.38 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=18.4
Q ss_pred HhCCCCCHH-HhhccCCCCCCCEEEEec
Q 043749 50 EFGGLVSAE-QINSTNGSNYPTSLMIML 76 (125)
Q Consensus 50 ~y~~~vs~~-~i~~~~~i~~Gq~L~IP~ 76 (125)
.|-++++++ +|.+...|.+++++.|-.
T Consensus 38 ~Y~GSITID~dLldaAgIl~~EkV~IvN 65 (143)
T 1pqh_A 38 HYEGTCAIDQDFLDAAGILENEAIDIWN 65 (143)
T ss_dssp SSCCCEEEEHHHHHHHTCCTTCEEEEEE
T ss_pred ccceeEEECHHHHHHcCCCCCCEEEEEE
Confidence 455655553 555556799999999863
No 34
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.70 E-value=57 Score=17.45 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=18.2
Q ss_pred EcCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 38 VWPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 38 V~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
+..|-|..+||+..| ++...+..
T Consensus 10 ~~~g~s~~eIA~~l~--is~~tV~~ 32 (61)
T 2jpc_A 10 IDEGYTNHGISEKLH--ISIKTVET 32 (61)
T ss_dssp HHTSCCSHHHHHHTC--SCHHHHHH
T ss_pred HHcCCCHHHHHHHhC--CCHHHHHH
Confidence 357889999999999 77766654
No 35
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.36 E-value=71 Score=17.99 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=18.3
Q ss_pred cCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 39 WPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 39 ~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
-.|-|..+||+.+| ++...+..
T Consensus 29 ~~g~s~~eIA~~l~--is~~tV~~ 50 (79)
T 1x3u_A 29 VAGLPNKSIAYDLD--ISPRTVEV 50 (79)
T ss_dssp TTTCCHHHHHHHTT--SCHHHHHH
T ss_pred HcCCCHHHHHHHHC--cCHHHHHH
Confidence 68999999999999 77766654
No 36
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=21.23 E-value=66 Score=19.52 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=18.3
Q ss_pred cCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 39 WPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 39 ~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
..|.+..+||+.|| ++...+.+
T Consensus 31 ~~g~s~~~ia~~lg--is~~Tv~~ 52 (128)
T 1pdn_C 31 ADGIRPCVISRQLR--VSHGCVSK 52 (128)
T ss_dssp HTTCCHHHHHHHHT--CCHHHHHH
T ss_pred HcCCCHHHHHHHHC--cCHHHHHH
Confidence 58999999999999 77766654
No 37
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=21.21 E-value=27 Score=22.66 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.5
Q ss_pred CCCHHHHHHHhCCCCCHHHhhc
Q 043749 41 ADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 41 GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
-|+|..||+.|| |+++.+..
T Consensus 59 ~~~l~~iA~~f~--V~~~yl~~ 78 (123)
T 3qwg_A 59 GATMAALANFFR--IKAAYFTD 78 (123)
T ss_dssp HHHHHHHHHHTT--SCTHHHHC
T ss_pred HHHHHHHHHHhC--CCHHHHcC
Confidence 367999999999 88877765
No 38
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=20.78 E-value=84 Score=18.69 Aligned_cols=19 Identities=32% Similarity=0.137 Sum_probs=17.1
Q ss_pred eeeEEcCCCCHHHHHHHhC
Q 043749 34 TTNNVWPADTIDSILNEFG 52 (125)
Q Consensus 34 ~~y~V~~GDTl~~IA~~y~ 52 (125)
..+.|.+|+||-+.|++.|
T Consensus 13 ~~~~~~~g~tlL~a~~~~g 31 (95)
T 1frr_A 13 FTLDVPEGTTILDAAEEAG 31 (95)
T ss_dssp EEEEECTTCCHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHcC
Confidence 5678899999999999988
No 39
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=20.74 E-value=61 Score=20.31 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=18.9
Q ss_pred cCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 39 WPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 39 ~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
+.|.|..+||+.|| ++...+.+
T Consensus 20 ~~G~s~~~ia~~lg--is~~Tv~r 41 (141)
T 1u78_A 20 LLNVSLHEMSRKIS--RSRHCIRV 41 (141)
T ss_dssp HTTCCHHHHHHHHT--CCHHHHHH
T ss_pred HcCCCHHHHHHHHC--cCHHHHHH
Confidence 68999999999999 77776665
No 40
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=20.54 E-value=29 Score=22.85 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.4
Q ss_pred CCCHHHHHHHhCCCCCHHHhhc
Q 043749 41 ADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 41 GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
-|+|..||..|| |+++.+..
T Consensus 61 ~~~l~~iA~~f~--V~~~yl~~ 80 (135)
T 3r1f_A 61 GATMAALANFFR--IKAAYFTD 80 (135)
T ss_dssp HHHHHHHHHHHT--SCTHHHHC
T ss_pred HHHHHHHHHHhC--CCHHHHcC
Confidence 367999999999 88877765
No 41
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.51 E-value=27 Score=21.25 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHhCCCCCHHHhh
Q 043749 40 PADTIDSILNEFGGLVSAEQIN 61 (125)
Q Consensus 40 ~GDTl~~IA~~y~~~vs~~~i~ 61 (125)
.-|++..||+.|+ +++++|.
T Consensus 64 s~~~l~kIa~~L~--v~~~~L~ 83 (88)
T 3t76_A 64 SLTVLLAICEYLN--CDFGDII 83 (88)
T ss_dssp CHHHHHHHHHHHT--CCGGGTC
T ss_pred CHHHHHHHHHHHC--cCHHHHh
Confidence 4466888888888 7776653
No 42
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=20.44 E-value=29 Score=19.41 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=15.0
Q ss_pred CCCHHHHHHHhCCCCCHHHhhc
Q 043749 41 ADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 41 GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
-|++..||+.|| ++.+++..
T Consensus 50 ~~~l~~ia~~l~--v~~~~l~~ 69 (73)
T 3omt_A 50 LETLFDIAEALN--VDVRELIV 69 (73)
T ss_dssp HHHHHHHHHHHT--SCGGGGBC
T ss_pred HHHHHHHHHHHC--cCHHHHhc
Confidence 456888999999 77776643
No 43
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.18 E-value=77 Score=18.48 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=19.0
Q ss_pred EcCCCCHHHHHHHhCCCCCHHHhhc
Q 043749 38 VWPADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 38 V~~GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
...|-|..+||+++| ++...+..
T Consensus 33 ~~~g~s~~eIA~~l~--is~~tV~~ 55 (82)
T 1je8_A 33 IAQGLPNKMIARRLD--ITESTVKV 55 (82)
T ss_dssp HTTTCCHHHHHHHHT--SCHHHHHH
T ss_pred HHcCCCHHHHHHHHC--cCHHHHHH
Confidence 368999999999999 77776654
No 44
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=20.16 E-value=75 Score=19.80 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=18.9
Q ss_pred EEcCCC---CHHHHHHHhCCCCCHHHhhc
Q 043749 37 NVWPAD---TIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 37 ~V~~GD---Tl~~IA~~y~~~vs~~~i~~ 62 (125)
..++|| |..++|++|| ||-..+++
T Consensus 26 ~~~~G~~lPs~~~La~~~~--vSr~tvr~ 52 (113)
T 3tqn_A 26 SYVEGEMIPSIRKISTEYQ--INPLTVSK 52 (113)
T ss_dssp SSCTTCEECCHHHHHHHHT--CCHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHC--cCHHHHHH
Confidence 347898 6679999999 78776666
No 45
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=20.08 E-value=26 Score=21.59 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=16.5
Q ss_pred CCCHHHHHHHhCCCCCHHHhhc
Q 043749 41 ADTIDSILNEFGGLVSAEQINS 62 (125)
Q Consensus 41 GDTl~~IA~~y~~~vs~~~i~~ 62 (125)
|.++.+||++|| ++...|.+
T Consensus 30 g~s~~~va~~~g--Is~~tl~~ 49 (108)
T 2rn7_A 30 WATICSIAPKIG--CTPETLRV 49 (108)
T ss_dssp HHHHHHHHHHHT--SCHHHHHH
T ss_pred cccHHHHHHHHC--cCHHHHHH
Confidence 368999999999 78777766
Done!