BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043750
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 29.6 bits (65), Expect = 0.61, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 33 LQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75
LQ L C + KL +C+ E+ G+ P + S P EL+
Sbjct: 73 LQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELH 115
>pdb|3MPR|A Chain A, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|B Chain B, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|C Chain C, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|D Chain D, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
Length = 298
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 31 GKLQSLPKLPCSLHKLHAHHCTALESLS-GLFPKSYESCPPRFELNGNYN 79
G+ ++LP + + H + +S G+ SYE C R+ LNG +N
Sbjct: 166 GRGKNLPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKCDYRYALNGTFN 215
>pdb|2P2D|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 104 WEHMHAREKISYPEFEGFAILPGNEIPKW------FCFQSMG 139
W+H+ K Y +++GF IL G + + F +++G
Sbjct: 88 WQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLENLG 129
>pdb|2HIM|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 104 WEHMHAREKISYPEFEGFAILPGNEIPKW------FCFQSMG 139
W+H+ K Y +++GF IL G + + F +++G
Sbjct: 88 WQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLENLG 129
>pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae
pdb|1G8G|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8G|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8H|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
pdb|1G8H|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
Length = 511
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 126 GNEIPKWFCFQSMGSLIKLKTPP 148
G EIP+WF + + +++ PP
Sbjct: 368 GGEIPEWFSYPEVVKILRESNPP 390
>pdb|1JEE|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JEE|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JED|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JED|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Thiosulfate
Length = 510
Score = 26.6 bits (57), Expect = 4.9, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 126 GNEIPKWFCFQSMGSLIKLKTPP 148
G EIP+WF + + +++ PP
Sbjct: 367 GGEIPEWFSYPEVVKILRESNPP 389
>pdb|1J70|A Chain A, Crystal Structure Of Yeast Atp Sulfurylase
pdb|1J70|B Chain B, Crystal Structure Of Yeast Atp Sulfurylase
pdb|1J70|C Chain C, Crystal Structure Of Yeast Atp Sulfurylase
Length = 514
Score = 26.6 bits (57), Expect = 5.0, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 126 GNEIPKWFCFQSMGSLIKLKTPP 148
G EIP+WF + + +++ PP
Sbjct: 371 GGEIPEWFSYPEVVKILRESNPP 393
>pdb|4DXF|A Chain A, Crystal Structure Of Staphylococcal Superantigen-Like
Protein 4
pdb|4DXF|B Chain B, Crystal Structure Of Staphylococcal Superantigen-Like
Protein 4
pdb|4DXG|A Chain A, Crystal Structure Of Staphylococcal Superantigen-Like
Protein 4 Complexed With Sialyl Lewis X
Length = 204
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 77 NYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYP 116
NYNL++ VGGI + + + H A R + IS+
Sbjct: 86 NYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHD 125
>pdb|1XZE|A Chain A, Fusarium Solani Cutinase Mutant With Ser 92 Replaced By
Cys
Length = 214
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 47 HAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNVVGGILED 91
C A+ + GLF ++ CP + G Y+ + +ED
Sbjct: 88 RGTSCAAIREMLGLFQQANTKCPDATLIAGGYSQGAALAAASIED 132
>pdb|1R6X|A Chain A, The Crystal Structure Of A Truncated Form Of Yeast Atp
Sulfurylase, Lacking The C-Terminal Aps Kinase-Like
Domain, In Complex With Sulfate
Length = 395
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 126 GNEIPKWFCFQSMGSLIKLKTPP 148
G EIP+WF + + +++ PP
Sbjct: 367 GGEIPEWFSYPEVVKILRESNPP 389
>pdb|3URY|A Chain A, Crystal Structure Of Superantigen-Like Protein, Exotoxin
From Staphylococcus Aureus Subsp. Aureus Nctc 8325
pdb|3URY|B Chain B, Crystal Structure Of Superantigen-Like Protein, Exotoxin
From Staphylococcus Aureus Subsp. Aureus Nctc 8325
Length = 193
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 77 NYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYP 116
NYNL++ VGGI + + + H A R + IS+
Sbjct: 75 NYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHD 114
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 67 SCPPRFELNGNYNLDRNVVGGILEDALQNIQHVA 100
S R +NG + RN++ I+E Q+I+ VA
Sbjct: 21 SMSVRVAINGFGRIGRNILRAIIESGRQDIEVVA 54
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 1 YLYLSKNNFERIPKSIIQXXXXXXXXXXXXGKLQSLPK 38
YLYL N + +PK + +LQSLP+
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,416,634
Number of Sequences: 62578
Number of extensions: 155149
Number of successful extensions: 362
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 20
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)