Query 043750
Match_columns 149
No_of_seqs 183 out of 1512
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:00:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.5 1.5E-14 3.3E-19 133.5 7.9 121 1-148 850-985 (1153)
2 PLN03210 Resistant to P. syrin 98.2 2.5E-06 5.3E-11 79.6 5.2 58 2-59 616-675 (1153)
3 PF12799 LRR_4: Leucine Rich r 98.1 2.3E-06 5E-11 49.8 2.3 38 1-39 5-42 (44)
4 PF13855 LRR_8: Leucine rich r 97.9 8.8E-06 1.9E-10 50.0 2.2 51 1-52 5-60 (61)
5 PRK15386 type III secretion pr 97.3 0.00015 3.4E-09 61.0 3.1 56 1-59 56-112 (426)
6 PRK15386 type III secretion pr 97.3 0.00023 5E-09 60.0 3.4 62 16-82 48-109 (426)
7 PRK15387 E3 ubiquitin-protein 97.0 0.0012 2.7E-08 59.6 5.2 53 2-58 206-258 (788)
8 PLN00113 leucine-rich repeat r 96.9 0.0011 2.3E-08 60.6 4.4 51 2-52 145-199 (968)
9 PLN00113 leucine-rich repeat r 96.8 0.0015 3.3E-08 59.6 4.5 57 2-58 504-564 (968)
10 KOG4658 Apoptotic ATPase [Sign 96.8 0.00073 1.6E-08 61.9 2.5 57 2-59 576-636 (889)
11 PLN03150 hypothetical protein; 96.7 0.0024 5.1E-08 56.4 5.0 58 2-59 447-508 (623)
12 PRK15387 E3 ubiquitin-protein 96.6 0.0023 5.1E-08 57.9 4.4 12 2-13 247-258 (788)
13 PRK15370 E3 ubiquitin-protein 96.5 0.0036 7.7E-08 56.5 4.4 47 2-51 204-251 (754)
14 PLN03150 hypothetical protein; 96.3 0.0038 8.3E-08 55.1 3.6 74 2-77 423-500 (623)
15 PF14580 LRR_9: Leucine-rich r 96.2 0.0045 9.8E-08 46.3 3.1 46 2-49 24-72 (175)
16 PRK15370 E3 ubiquitin-protein 96.2 0.0058 1.3E-07 55.2 4.0 28 2-31 225-252 (754)
17 KOG0618 Serine/threonine phosp 95.9 0.002 4.3E-08 58.8 0.0 75 2-79 412-488 (1081)
18 PF13855 LRR_8: Leucine rich r 95.9 0.0044 9.5E-08 37.7 1.5 31 1-31 29-60 (61)
19 PF14580 LRR_9: Leucine-rich r 95.8 0.0054 1.2E-07 45.9 2.0 73 1-76 46-122 (175)
20 KOG4658 Apoptotic ATPase [Sign 95.8 0.0035 7.7E-08 57.5 1.2 50 1-50 599-651 (889)
21 PF00560 LRR_1: Leucine Rich R 95.8 0.0027 6E-08 31.2 0.2 19 1-19 4-22 (22)
22 KOG0617 Ras suppressor protein 95.8 0.0015 3.3E-08 49.6 -1.1 56 2-59 132-190 (264)
23 KOG0617 Ras suppressor protein 95.7 0.0021 4.6E-08 48.8 -0.6 58 2-61 38-98 (264)
24 PF12799 LRR_4: Leucine Rich r 95.3 0.014 3.1E-07 33.6 2.1 38 20-59 1-41 (44)
25 PF13504 LRR_7: Leucine rich r 95.2 0.011 2.3E-07 27.3 1.0 17 20-37 1-17 (17)
26 KOG0472 Leucine-rich repeat pr 94.9 0.014 2.9E-07 49.5 1.7 38 2-40 257-294 (565)
27 KOG0444 Cytoskeletal regulator 94.8 0.0067 1.4E-07 54.0 -0.6 29 2-30 155-183 (1255)
28 COG4886 Leucine-rich repeat (L 94.3 0.018 4E-07 47.3 1.0 50 1-51 144-196 (394)
29 PF00560 LRR_1: Leucine Rich R 94.1 0.024 5.3E-07 27.7 0.9 18 21-39 1-18 (22)
30 KOG0472 Leucine-rich repeat pr 93.3 0.029 6.3E-07 47.5 0.5 56 2-59 233-292 (565)
31 KOG0618 Serine/threonine phosp 93.1 0.021 4.5E-07 52.4 -0.6 57 1-59 245-304 (1081)
32 KOG1259 Nischarin, modulator o 92.6 0.059 1.3E-06 44.3 1.3 50 1-51 288-339 (490)
33 smart00370 LRR Leucine-rich re 90.0 0.23 4.9E-06 24.9 1.5 19 19-38 1-19 (26)
34 smart00369 LRR_TYP Leucine-ric 90.0 0.23 4.9E-06 24.9 1.5 19 19-38 1-19 (26)
35 KOG0532 Leucine-rich repeat (L 89.4 0.21 4.5E-06 44.1 1.7 50 1-51 215-270 (722)
36 KOG4194 Membrane glycoprotein 89.4 0.059 1.3E-06 47.7 -1.6 49 1-50 321-374 (873)
37 cd00116 LRR_RI Leucine-rich re 89.2 0.15 3.3E-06 40.0 0.7 30 2-31 142-176 (319)
38 cd00116 LRR_RI Leucine-rich re 88.3 0.26 5.7E-06 38.7 1.5 30 2-31 86-119 (319)
39 KOG0444 Cytoskeletal regulator 88.2 0.16 3.5E-06 45.6 0.3 54 4-58 323-379 (1255)
40 KOG4579 Leucine-rich repeat (L 87.9 0.047 1E-06 40.1 -2.7 49 2-51 58-110 (177)
41 KOG0531 Protein phosphatase 1, 87.4 0.3 6.4E-06 40.8 1.4 49 2-51 100-150 (414)
42 KOG3665 ZYG-1-like serine/thre 87.2 0.23 4.9E-06 44.8 0.6 50 1-52 177-231 (699)
43 COG4886 Leucine-rich repeat (L 86.7 0.21 4.6E-06 41.0 0.2 48 2-50 168-218 (394)
44 KOG4194 Membrane glycoprotein 86.3 0.57 1.2E-05 41.8 2.5 49 1-50 82-134 (873)
45 KOG1859 Leucine-rich repeat pr 85.9 0.29 6.3E-06 44.6 0.6 68 1-74 191-261 (1096)
46 KOG2739 Leucine-rich acidic nu 83.4 0.79 1.7E-05 36.4 1.9 63 18-81 63-130 (260)
47 smart00364 LRR_BAC Leucine-ric 83.3 0.71 1.5E-05 23.7 1.1 19 21-40 3-21 (26)
48 KOG0532 Leucine-rich repeat (L 82.3 0.23 5E-06 43.8 -1.5 37 2-39 148-184 (722)
49 KOG0531 Protein phosphatase 1, 82.3 0.61 1.3E-05 39.0 1.0 50 1-52 122-173 (414)
50 KOG1259 Nischarin, modulator o 82.2 0.73 1.6E-05 38.1 1.4 47 2-50 312-361 (490)
51 KOG4579 Leucine-rich repeat (L 82.0 0.31 6.8E-06 35.8 -0.7 37 2-39 82-118 (177)
52 KOG4237 Extracellular matrix p 81.0 0.82 1.8E-05 38.8 1.3 34 2-36 72-106 (498)
53 smart00367 LRR_CC Leucine-rich 79.9 1.4 3.1E-05 22.0 1.6 14 20-33 2-15 (26)
54 KOG1644 U2-associated snRNP A' 74.3 4.7 0.0001 31.4 3.6 47 2-50 47-97 (233)
55 KOG3207 Beta-tubulin folding c 71.1 1.5 3.2E-05 37.7 0.3 50 1-51 150-207 (505)
56 KOG2120 SCF ubiquitin ligase, 70.2 0.22 4.7E-06 41.0 -4.7 54 1-55 189-248 (419)
57 KOG3207 Beta-tubulin folding c 69.7 2.9 6.3E-05 35.9 1.7 49 1-50 250-310 (505)
58 KOG2120 SCF ubiquitin ligase, 69.1 2.1 4.7E-05 35.3 0.8 51 2-54 291-351 (419)
59 KOG2739 Leucine-rich acidic nu 65.5 3.7 8E-05 32.7 1.4 54 1-55 69-130 (260)
60 smart00365 LRR_SD22 Leucine-ri 65.0 5.5 0.00012 20.3 1.6 18 19-37 1-18 (26)
61 KOG3864 Uncharacterized conser 61.8 3.6 7.8E-05 31.9 0.8 40 16-55 121-165 (221)
62 PF13516 LRR_6: Leucine Rich r 61.7 5.4 0.00012 19.3 1.2 12 20-31 2-13 (24)
63 KOG4237 Extracellular matrix p 60.7 2.1 4.6E-05 36.4 -0.7 40 1-40 95-135 (498)
64 KOG2982 Uncharacterized conser 52.1 8.8 0.00019 31.8 1.5 49 1-50 75-130 (418)
65 KOG1859 Leucine-rich repeat pr 48.4 3 6.5E-05 38.3 -1.8 55 3-59 170-226 (1096)
66 KOG3665 ZYG-1-like serine/thre 46.6 7 0.00015 35.4 0.2 28 2-29 127-157 (699)
67 KOG1644 U2-associated snRNP A' 37.8 26 0.00056 27.3 2.1 38 1-39 68-106 (233)
68 PF05182 Fip1: Fip1 motif; In 36.5 14 0.00031 21.4 0.4 14 124-137 15-28 (45)
69 KOG4341 F-box protein containi 35.3 5.5 0.00012 34.1 -2.1 65 20-84 138-207 (483)
70 PF13306 LRR_5: Leucine rich r 34.4 26 0.00057 23.4 1.5 38 9-48 46-88 (129)
71 TIGR00864 PCC polycystin catio 32.7 28 0.0006 36.4 1.9 27 3-29 1-28 (2740)
72 smart00368 LRR_RI Leucine rich 30.6 33 0.00071 17.3 1.1 12 20-31 2-13 (28)
73 KOG0636 ATP sulfurylase (sulfa 28.9 23 0.00051 29.9 0.6 15 125-139 335-349 (466)
74 KOG3435 Mitochondrial/chloropl 28.5 22 0.00049 25.2 0.4 17 121-137 68-84 (127)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.53 E-value=1.5e-14 Score=133.51 Aligned_cols=121 Identities=26% Similarity=0.321 Sum_probs=93.3
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCC-----------CC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKS-----------YE 66 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~-----------~~ 66 (149)
+|+|++|.+..+|.+|..+++|+.|+|++|.+|+.+|..+ .+|+.+++.+|.+|+.++-..... ..
T Consensus 850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~ 929 (1153)
T PLN03210 850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKL 929 (1153)
T ss_pred EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccC
Confidence 4789999999999999999999999999999999999865 567888999999998765321100 00
Q ss_pred CCCCeeEecCCCCCchhhhhchHHHHHHHHHHhhhHHHhhhhhcccCCCCCcceEEEccCCCCCCccccccCCceEE-Ee
Q 043750 67 SCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMGSLIK-LK 145 (149)
Q Consensus 67 ~~~~~l~~~nC~~L~~~~~~~i~~~~~~~~q~~~~~~~~~~~~~~~~~~~~f~~~~~lPGs~IP~WF~~qs~gssis-i~ 145 (149)
.....+.|.||++|++.+.. +.- ..+ ..+++||.+||+||.||+.|++++ |.
T Consensus 930 p~~~~l~f~nC~~L~~~a~l----------~~~----------------~~~-~~~~l~g~evp~~f~hr~~g~sl~~i~ 982 (1153)
T PLN03210 930 PSTVCINFINCFNLDQEALL----------QQQ----------------SIF-KQLILSGEEVPSYFTHRTTGASLTNIP 982 (1153)
T ss_pred CchhccccccccCCCchhhh----------ccc----------------ccc-eEEECCCccCchhccCCcccceeeeec
Confidence 11234689999999865421 100 111 468999999999999999999998 99
Q ss_pred CCC
Q 043750 146 TPP 148 (149)
Q Consensus 146 lP~ 148 (149)
+|+
T Consensus 983 l~~ 985 (1153)
T PLN03210 983 LLH 985 (1153)
T ss_pred cCC
Confidence 976
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.16 E-value=2.5e-06 Score=79.62 Aligned_cols=58 Identities=22% Similarity=0.407 Sum_probs=38.0
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~ 59 (149)
|+|++|++..+|.++..+++|+.|+|++|..++.+|++. ++|+.|++.+|.++..+|.
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch
Confidence 566666676777767777777777777766666666543 5666666666666655554
No 3
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=2.3e-06 Score=49.84 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=33.4
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL 39 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l 39 (149)
+|++++|+|..+|..|++|++|+.|++++|+ +.++|.+
T Consensus 5 ~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 5 ELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp EEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred EEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 4899999999999999999999999999997 8877654
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.88 E-value=8.8e-06 Score=50.02 Aligned_cols=51 Identities=33% Similarity=0.363 Sum_probs=40.9
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC----CCccEEcccccc
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHCT 52 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C~ 52 (149)
+|++++|++..+|. .+.++++|++|++++++ ++.+|.-. ++|+.|++.+|.
T Consensus 5 ~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 5 SLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp EEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred EEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999986 68999999999999887 88887532 567777777653
No 5
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.35 E-value=0.00015 Score=60.98 Aligned_cols=56 Identities=29% Similarity=0.603 Sum_probs=39.0
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCC-CCCCccEEccccccccccccC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-LPCSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~-l~~~L~~L~~~~C~sL~~~~~ 59 (149)
+|++++|+++++|. --.+|+.|.+++|.+|..+|+ +|.+|+.|++.+|..+..+|.
T Consensus 56 ~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 56 RLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred EEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc
Confidence 36777777777772 123577777877777777775 567777777777776666654
No 6
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.27 E-value=0.00023 Score=59.97 Aligned_cols=62 Identities=24% Similarity=0.471 Sum_probs=51.0
Q ss_pred hcCCCCCCEEccccccccccCCCCCCCccEEccccccccccccCCCCCCCCCCCCeeEecCCCCCch
Q 043750 16 IIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDR 82 (149)
Q Consensus 16 i~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~~L~~ 82 (149)
|..+.++..|++++| .|+++|.+|.+|+.|.+.+|..|+.+|.... ..+..|.+.+|.++..
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP----~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIP----EGLEKLTVCHCPEISG 109 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhh----hhhhheEccCcccccc
Confidence 556789999999999 5999999999999999999999998886321 2456788888876643
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.97 E-value=0.0012 Score=59.61 Aligned_cols=53 Identities=26% Similarity=0.432 Sum_probs=34.3
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEcccccccccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLS 58 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~ 58 (149)
|+|+++++.+||.++.. +|+.|.+.++. +..||.+|++|+.|++.++ .|+.+|
T Consensus 206 LdLs~~~LtsLP~~l~~--~L~~L~L~~N~-Lt~LP~lp~~Lk~LdLs~N-~LtsLP 258 (788)
T PRK15387 206 LNVGESGLTTLPDCLPA--HITTLVIPDNN-LTSLPALPPELRTLEVSGN-QLTSLP 258 (788)
T ss_pred EEcCCCCCCcCCcchhc--CCCEEEccCCc-CCCCCCCCCCCcEEEecCC-ccCccc
Confidence 67777788888876653 56666666654 6666666666666666554 344444
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.91 E-value=0.0011 Score=60.60 Aligned_cols=51 Identities=29% Similarity=0.250 Sum_probs=32.0
Q ss_pred EEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccccc
Q 043750 2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCT 52 (149)
Q Consensus 2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~ 52 (149)
|+|++|.+. .+|.+++.+++|++|+|++|.-...+|... .+|++|++.+|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 566666654 567677777777777777776444555432 456666666654
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.81 E-value=0.0015 Score=59.64 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=27.2
Q ss_pred EEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccccccccccc
Q 043750 2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLS 58 (149)
Q Consensus 2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~ 58 (149)
|+|++|.+. .+|..+.++++|+.|+|++|.-...+|... ++|+.|++.+|.-...+|
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 455555543 445555555555555555555333344322 345555555554333333
No 10
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.81 E-value=0.00073 Score=61.88 Aligned_cols=57 Identities=37% Similarity=0.422 Sum_probs=42.1
Q ss_pred EEccCC-CccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccC
Q 043750 2 LYLSKN-NFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 2 L~L~~~-~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~ 59 (149)
|||++| .+..||++|++|-+|++|+|+++. +..||.-. .+|.+|++.....++.++.
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccc
Confidence 788877 477888888888888888888877 77777654 4566777776666655533
No 11
>PLN03150 hypothetical protein; Provisional
Probab=96.74 E-value=0.0024 Score=56.41 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=30.3
Q ss_pred EEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccC
Q 043750 2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~ 59 (149)
|+|++|++. .+|.+++.+++|+.|+|++|.--..+|+.. .+|+.|++.++.-...+|.
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 455555554 555556666666666666555333455432 4555666655543334443
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.64 E-value=0.0023 Score=57.88 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=5.6
Q ss_pred EEccCCCccccc
Q 043750 2 LYLSKNNFERIP 13 (149)
Q Consensus 2 L~L~~~~~~~lP 13 (149)
|+|++|++..+|
T Consensus 247 LdLs~N~LtsLP 258 (788)
T PRK15387 247 LEVSGNQLTSLP 258 (788)
T ss_pred EEecCCccCccc
Confidence 444444444444
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.46 E-value=0.0036 Score=56.53 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=27.5
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCC-CCCCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-LPCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~-l~~~L~~L~~~~C 51 (149)
|+|++|++..+|..+. .+|+.|++++|. +..+|. ++.+|+.|++.+|
T Consensus 204 L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 204 LILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLPDTIQEMELSIN 251 (754)
T ss_pred EEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhhccccEEECcCC
Confidence 5667777777776543 366666666655 666664 3344555555444
No 14
>PLN03150 hypothetical protein; Provisional
Probab=96.31 E-value=0.0038 Score=55.10 Aligned_cols=74 Identities=24% Similarity=0.220 Sum_probs=52.6
Q ss_pred EEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
|+|++|.+. .+|..|.+|++|+.|+|++|.--..+|... .+|+.|++.++.--..+|.... .+..++.|++.++
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L~~L~Ls~N 500 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG--QLTSLRILNLNGN 500 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh--cCCCCCEEECcCC
Confidence 788899887 789999999999999999988445777543 6889999988764445554322 2334455555544
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.21 E-value=0.0045 Score=46.33 Aligned_cols=46 Identities=33% Similarity=0.363 Sum_probs=9.4
Q ss_pred EEccCCCccccchhhc-CCCCCCEEccccccccccCCCCC--CCccEEccc
Q 043750 2 LYLSKNNFERIPKSII-QLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAH 49 (149)
Q Consensus 2 L~L~~~~~~~lP~si~-~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~ 49 (149)
|+|+||.|..+- .++ .|.+|+.|+|++|. ++.++.++ ..|+.|++.
T Consensus 24 L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 24 LNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLS 72 (175)
T ss_dssp -------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--
T ss_pred cccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccC
Confidence 555566555543 344 35556666666555 55555544 445555443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.15 E-value=0.0058 Score=55.20 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=12.5
Q ss_pred EEccCCCccccchhhcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~ 31 (149)
|+|++|+|..+|.++. ..|+.|+|++|.
T Consensus 225 L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 225 LYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred EECCCCccccCChhhh--ccccEEECcCCc
Confidence 4555555555554332 134444444443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.94 E-value=0.002 Score=58.80 Aligned_cols=75 Identities=25% Similarity=0.341 Sum_probs=45.6
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecCCCC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYN 79 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~~ 79 (149)
|+||||+++.||+++..+..|+.|...++. +..+|++. +.|+++|+ .|..|..+-....... ..+++|++++-..
T Consensus 412 L~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDl-S~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 412 LNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDL-SCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEec-ccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 677777777777777777777777776655 77777664 56778877 4555543322211110 2345666655443
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.91 E-value=0.0044 Score=37.74 Aligned_cols=31 Identities=39% Similarity=0.439 Sum_probs=28.0
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEcccccc
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~ 31 (149)
+|++++|++..+|. .+.++++|++|++++|+
T Consensus 29 ~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 29 TLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp EEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred EeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 48999999999976 68999999999999986
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.84 E-value=0.0054 Score=45.93 Aligned_cols=73 Identities=26% Similarity=0.290 Sum_probs=28.2
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCC-C---CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG 76 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n 76 (149)
.|+|++|.++.+. ++..|++|+.|++++++ +.++.+ + .++|+.|++.+.. +..+.....+..+..+..|++.+
T Consensus 46 ~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 46 VLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT
T ss_pred EEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccC
Confidence 3899999999997 59999999999999988 888864 2 3689999887542 33332222222233455666544
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.83 E-value=0.0035 Score=57.50 Aligned_cols=50 Identities=34% Similarity=0.501 Sum_probs=44.6
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccc
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHH 50 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~ 50 (149)
||+|+++.+..||.++++|.+|.+|+++++.++..+|... ++||+|.+..
T Consensus 599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 7899999999999999999999999999999999998764 6788887653
No 21
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0027 Score=31.21 Aligned_cols=19 Identities=53% Similarity=0.723 Sum_probs=14.7
Q ss_pred CEEccCCCccccchhhcCC
Q 043750 1 YLYLSKNNFERIPKSIIQL 19 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L 19 (149)
+|||++|+|..+|+++++|
T Consensus 4 ~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 4 YLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp EEEETSSEESEEGTTTTT-
T ss_pred EEECCCCcCEeCChhhcCC
Confidence 4889999888898876654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.79 E-value=0.0015 Score=49.60 Aligned_cols=56 Identities=38% Similarity=0.500 Sum_probs=47.6
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~ 59 (149)
|.|++|.|+-+|..+++|++|+.|.+.+.. |-++|... ..|+.|++.+-. |+.+|.
T Consensus 132 lyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr-l~vlpp 190 (264)
T KOG0617|consen 132 LYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR-LTVLPP 190 (264)
T ss_pred HHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce-eeecCh
Confidence 468899999999999999999999999988 88888765 577888887754 777776
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.70 E-value=0.0021 Score=48.81 Aligned_cols=58 Identities=33% Similarity=0.412 Sum_probs=41.2
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCc---cEEccccccccccccCCC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSL---HKLHAHHCTALESLSGLF 61 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L---~~L~~~~C~sL~~~~~~~ 61 (149)
|.|+.|++..+|..|..|.+|+.|++.+.. ++.+|...+++ +.|++ +...|..+|..+
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnv-gmnrl~~lprgf 98 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNV-GMNRLNILPRGF 98 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheec-chhhhhcCcccc
Confidence 567888888888888888888888888877 88888766544 44444 344555555543
No 24
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.34 E-value=0.014 Score=33.65 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=27.7
Q ss_pred CCCCEEccccccccccCCC-CC--CCccEEccccccccccccC
Q 043750 20 SKLSCLYLSYCGKLQSLPK-LP--CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 20 ~~L~~L~L~~c~~L~~lP~-l~--~~L~~L~~~~C~sL~~~~~ 59 (149)
++|++|+++++. +..+|. +- ++|+.|++.++. ++.++.
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 479999999997 889988 43 688899998884 555543
No 25
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.16 E-value=0.011 Score=27.34 Aligned_cols=17 Identities=47% Similarity=0.501 Sum_probs=9.3
Q ss_pred CCCCEEccccccccccCC
Q 043750 20 SKLSCLYLSYCGKLQSLP 37 (149)
Q Consensus 20 ~~L~~L~L~~c~~L~~lP 37 (149)
++|+.|+|++|+ |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 367777887777 77665
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.93 E-value=0.014 Score=49.47 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=21.6
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP 40 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~ 40 (149)
|||..|+++++|+.|..|.+|.+|++++.. +.++|-..
T Consensus 257 LDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sL 294 (565)
T KOG0472|consen 257 LDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSL 294 (565)
T ss_pred eeccccccccCchHHHHhhhhhhhcccCCc-cccCCccc
Confidence 555556666666666666556666665555 55555433
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.75 E-value=0.0067 Score=54.05 Aligned_cols=29 Identities=45% Similarity=0.492 Sum_probs=14.5
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYC 30 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c 30 (149)
||||+|++..||+-+..|.+|+.|.|+++
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 44555555555555555555555555443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.26 E-value=0.018 Score=47.28 Aligned_cols=50 Identities=34% Similarity=0.438 Sum_probs=34.5
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCC---CCCCccEEccccc
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK---LPCSLHKLHAHHC 51 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~---l~~~L~~L~~~~C 51 (149)
+|++++|.+..+|..++.++.|+.|++++|. +..+|. ...+|+.|++.+.
T Consensus 144 ~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N 196 (394)
T COG4886 144 ELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN 196 (394)
T ss_pred cccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCC
Confidence 3667777777777667777777777777777 777776 3456666666554
No 29
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.12 E-value=0.024 Score=27.71 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=11.4
Q ss_pred CCCEEccccccccccCCCC
Q 043750 21 KLSCLYLSYCGKLQSLPKL 39 (149)
Q Consensus 21 ~L~~L~L~~c~~L~~lP~l 39 (149)
+|++|+|++| +++.+|..
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4667777777 36666654
No 30
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.26 E-value=0.029 Score=47.53 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=44.4
Q ss_pred EEccCCCccccchhhc-CCCCCCEEccccccccccCCCCC---CCccEEccccccccccccC
Q 043750 2 LYLSKNNFERIPKSII-QLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 2 L~L~~~~~~~lP~si~-~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~ 59 (149)
|+++.|.++.+|..+. +|.+|..|+|.+.+ +++.|+-. .+|.+||+++-+ +..+|.
T Consensus 233 lh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~ 292 (565)
T KOG0472|consen 233 LHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPY 292 (565)
T ss_pred HHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCc
Confidence 4566777888888765 89999999999999 99999865 567888887754 555665
No 31
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.14 E-value=0.021 Score=52.41 Aligned_cols=57 Identities=32% Similarity=0.325 Sum_probs=44.8
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~ 59 (149)
|++++.|++..+|++|..+.+|+.|+..++. |..+|.-. .+|+.|.+..|. ++.+|.
T Consensus 245 ~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ne-l~yip~ 304 (1081)
T KOG0618|consen 245 YLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNE-LEYIPP 304 (1081)
T ss_pred eeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhh-hhhCCC
Confidence 5788999999999999999999999998877 77777654 567777776665 555554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=92.58 E-value=0.059 Score=44.31 Aligned_cols=50 Identities=28% Similarity=0.231 Sum_probs=38.5
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC 51 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C 51 (149)
+|||++|.|+.+-+|++-+++++.|+++++. +..+..+. ++|+.|++++-
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGN 339 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccc
Confidence 4789999998888889888999999998877 65555543 56777777653
No 33
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.95 E-value=0.23 Score=24.89 Aligned_cols=19 Identities=47% Similarity=0.467 Sum_probs=14.5
Q ss_pred CCCCCEEccccccccccCCC
Q 043750 19 LSKLSCLYLSYCGKLQSLPK 38 (149)
Q Consensus 19 L~~L~~L~L~~c~~L~~lP~ 38 (149)
|++|++|+|+++. ++.+|.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCCCEEECCCCc-CCcCCH
Confidence 4678888888886 777765
No 34
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.95 E-value=0.23 Score=24.89 Aligned_cols=19 Identities=47% Similarity=0.467 Sum_probs=14.5
Q ss_pred CCCCCEEccccccccccCCC
Q 043750 19 LSKLSCLYLSYCGKLQSLPK 38 (149)
Q Consensus 19 L~~L~~L~L~~c~~L~~lP~ 38 (149)
|++|++|+|+++. ++.+|.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCCCEEECCCCc-CCcCCH
Confidence 4678888888886 777765
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=89.40 E-value=0.21 Score=44.10 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=42.3
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC------CCccEEccccc
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP------CSLHKLHAHHC 51 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~------~~L~~L~~~~C 51 (149)
.||++.|++..||-++.++++|++|-|+++. |++=|.-+ --.++|+..-|
T Consensus 215 ~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 4899999999999999999999999999998 98877644 12477888777
No 36
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=89.39 E-value=0.059 Score=47.73 Aligned_cols=49 Identities=37% Similarity=0.377 Sum_probs=37.5
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC----CCccEEcccc
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHH 50 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~ 50 (149)
.|+|+.|++.++|+ ++..|+.|+.|+|++++ +..|-+.. ++|++|++.+
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcC
Confidence 47889999988876 58888889999998877 77776543 6777776653
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=89.16 E-value=0.15 Score=40.04 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=15.9
Q ss_pred EEccCCCcc-----ccchhhcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~ 31 (149)
|+|++|++. .++..+..+.+|+.|++++|.
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 455555544 334445555556666665554
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=88.26 E-value=0.26 Score=38.71 Aligned_cols=30 Identities=30% Similarity=0.212 Sum_probs=13.8
Q ss_pred EEccCCCcc-ccchhhcCCCC---CCEEcccccc
Q 043750 2 LYLSKNNFE-RIPKSIIQLSK---LSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~-~lP~si~~L~~---L~~L~L~~c~ 31 (149)
|++++|.+. ..+..+..+.+ |+.|++++|.
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred EEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 455555543 23333333333 5555555554
No 39
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=88.24 E-value=0.16 Score=45.63 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=37.3
Q ss_pred ccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccccccccccc
Q 043750 4 LSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLS 58 (149)
Q Consensus 4 L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~ 58 (149)
+.+|+++-+|++++.+.+|+.|.|++++ |..||+-+ ..|++|+++.-+.|.-=|
T Consensus 323 aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 323 AANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCC
Confidence 4566677777777777777777776555 77777643 667777777777775433
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.86 E-value=0.047 Score=40.07 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=34.3
Q ss_pred EEccCCCccccchhhcCC-CCCCEEccccccccccCCCCC---CCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQL-SKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L-~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C 51 (149)
.+|++|.|+.+|..+... +-++.|+|++++ +..+|+.. +.|+.|++..-
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC
Confidence 467888888888776544 477788888777 77777643 56777766543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.36 E-value=0.3 Score=40.85 Aligned_cols=49 Identities=29% Similarity=0.343 Sum_probs=27.5
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C 51 (149)
|++.+|.++.+...+..+.+|++|+|++.. +..+..+- ..|+.|++.+.
T Consensus 100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 100 LDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred eeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccC
Confidence 556666666665546666666666666655 55554432 34555555543
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=87.22 E-value=0.23 Score=44.76 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=37.0
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCC---C--CCccEEcccccc
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL---P--CSLHKLHAHHCT 52 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l---~--~~L~~L~~~~C~ 52 (149)
.||+|++++..+ .+|++|++|+.|.+.+-. .+.-.++ . .+|++||++.-.
T Consensus 177 sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 177 SLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred eeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence 489999999988 789999999999887655 4333322 2 688888887543
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=86.74 E-value=0.21 Score=40.97 Aligned_cols=48 Identities=33% Similarity=0.391 Sum_probs=30.9
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCC---CCCccEEcccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL---PCSLHKLHAHH 50 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l---~~~L~~L~~~~ 50 (149)
|+++.|++..+|.....+..|+.|.+++++ ++.+|.. +..|+.|.+.+
T Consensus 168 L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred cccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcC
Confidence 566677777777666677777777777766 6666663 34455555544
No 44
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=86.34 E-value=0.57 Score=41.76 Aligned_cols=49 Identities=29% Similarity=0.360 Sum_probs=39.9
Q ss_pred CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCCC---CCccEEcccc
Q 043750 1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHH 50 (149)
Q Consensus 1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~ 50 (149)
.||+++|++..+ +..+.+|.+|+.++|.++. |..||... ++++.|++.+
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeec
Confidence 389999998866 5678999999999999888 99999874 5687777654
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=85.91 E-value=0.29 Score=44.55 Aligned_cols=68 Identities=32% Similarity=0.519 Sum_probs=48.0
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEe
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFEL 74 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~ 74 (149)
.|||+.|+|..+- .|..|.+|++|+|+++. |+.+|.+- ..|+.|.+.|-. |+++... .+++.+.+|++
T Consensus 191 ~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~-l~tL~gi---e~LksL~~LDl 261 (1096)
T KOG1859|consen 191 SLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNA-LTTLRGI---ENLKSLYGLDL 261 (1096)
T ss_pred hhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccH-HHhhhhH---Hhhhhhhccch
Confidence 3789999998776 69999999999999988 99998874 468888776642 3333321 22334455554
No 46
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.38 E-value=0.79 Score=36.44 Aligned_cols=63 Identities=24% Similarity=0.120 Sum_probs=27.4
Q ss_pred CCCCCCEEccccc--cccccCCCC---CCCccEEccccccccccccCCCCCCCCCCCCeeEecCCCCCc
Q 043750 18 QLSKLSCLYLSYC--GKLQSLPKL---PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLD 81 (149)
Q Consensus 18 ~L~~L~~L~L~~c--~~L~~lP~l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~~L~ 81 (149)
.|++|+.|.++.+ .--..++-+ .++|++|++.+-. ++.+........+.++..|++.||....
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccc
Confidence 4556666666655 211122211 1455665554432 1112111112233445566666666554
No 47
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.33 E-value=0.71 Score=23.75 Aligned_cols=19 Identities=42% Similarity=0.487 Sum_probs=14.8
Q ss_pred CCCEEccccccccccCCCCC
Q 043750 21 KLSCLYLSYCGKLQSLPKLP 40 (149)
Q Consensus 21 ~L~~L~L~~c~~L~~lP~l~ 40 (149)
+|+.|+++++. |.+||++.
T Consensus 3 ~L~~L~vs~N~-Lt~LPeL~ 21 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPELX 21 (26)
T ss_pred ccceeecCCCc-cccCcccc
Confidence 57788888877 88888764
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=82.28 E-value=0.23 Score=43.81 Aligned_cols=37 Identities=35% Similarity=0.458 Sum_probs=28.0
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL 39 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l 39 (149)
|-+++|+++.+|+.|+.+..|..|+.+.|. ++++|.-
T Consensus 148 li~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq 184 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ 184 (722)
T ss_pred EEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH
Confidence 456778888888888877888888888776 7766643
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=82.25 E-value=0.61 Score=38.97 Aligned_cols=50 Identities=26% Similarity=0.165 Sum_probs=41.1
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCC--CCCccEEcccccc
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHHCT 52 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~C~ 52 (149)
+|+|++|.|..+.. +..|..|+.|++.++. +..+..+ ..+|+.+++.++.
T Consensus 122 ~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 122 VLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred heeccccccccccc-hhhccchhhheeccCc-chhccCCccchhhhcccCCcch
Confidence 48899999988864 8888889999999988 8888887 4678888777665
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=82.23 E-value=0.73 Score=38.08 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=36.4
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHH 50 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~ 50 (149)
|+++.|.+..+-. +..|++|+.|+|++++ |.++-.+- .+++.|.+.+
T Consensus 312 L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 312 LILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred Eeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhh
Confidence 7899999988765 9999999999999988 77666553 5666665543
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=82.00 E-value=0.31 Score=35.82 Aligned_cols=37 Identities=24% Similarity=0.522 Sum_probs=17.7
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL 39 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l 39 (149)
|+|++|.+..+|..+..++.|+.|+++.++ +...|..
T Consensus 82 lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~v 118 (177)
T KOG4579|consen 82 LNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRV 118 (177)
T ss_pred hhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHH
Confidence 344444555555555555555555555444 4444433
No 52
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=81.01 E-value=0.82 Score=38.83 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=26.1
Q ss_pred EEccCCCccccch-hhcCCCCCCEEccccccccccC
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSL 36 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~l 36 (149)
++|..|.|+.||+ .++.+.+|+.|+|+++. +..|
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I 106 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFI 106 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccc-hhhc
Confidence 6778888888887 47888888888888765 4444
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.92 E-value=1.4 Score=22.00 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=8.4
Q ss_pred CCCCEEcccccccc
Q 043750 20 SKLSCLYLSYCGKL 33 (149)
Q Consensus 20 ~~L~~L~L~~c~~L 33 (149)
++|+.|+|++|.++
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45666666666644
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=74.30 E-value=4.7 Score=31.37 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=32.5
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCC-CCC---CCccEEcccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLP-KLP---CSLHKLHAHH 50 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP-~l~---~~L~~L~~~~ 50 (149)
+||++|.+..++. +..+.+|..|.|++++ +..|- .+- ++|+.|.+.+
T Consensus 47 iDLtdNdl~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 47 IDLTDNDLRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ecccccchhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecC
Confidence 6888888887775 7788888889888877 55553 221 4556665544
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=71.13 E-value=1.5 Score=37.65 Aligned_cols=50 Identities=32% Similarity=0.301 Sum_probs=33.0
Q ss_pred CEEccCCC---ccccchhhcCCCCCCEEccccccccccCC-C----CCCCccEEccccc
Q 043750 1 YLYLSKNN---FERIPKSIIQLSKLSCLYLSYCGKLQSLP-K----LPCSLHKLHAHHC 51 (149)
Q Consensus 1 ~L~L~~~~---~~~lP~si~~L~~L~~L~L~~c~~L~~lP-~----l~~~L~~L~~~~C 51 (149)
.|||++|= +..+-.-+.+|++|+.|+|+.++ +...- + ..+.|+.|.+..|
T Consensus 150 ~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~C 207 (505)
T KOG3207|consen 150 DLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSC 207 (505)
T ss_pred eecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccC
Confidence 37788873 44444456788999999998777 33221 1 2267888888777
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=70.19 E-value=0.22 Score=40.97 Aligned_cols=54 Identities=24% Similarity=0.296 Sum_probs=27.7
Q ss_pred CEEccCCCcc--ccchhhcCCCCCCEEcccccccccc-CCC-CC--CCccEEccccccccc
Q 043750 1 YLYLSKNNFE--RIPKSIIQLSKLSCLYLSYCGKLQS-LPK-LP--CSLHKLHAHHCTALE 55 (149)
Q Consensus 1 ~L~L~~~~~~--~lP~si~~L~~L~~L~L~~c~~L~~-lP~-l~--~~L~~L~~~~C~sL~ 55 (149)
+|||++..++ .+..-++++++|+.|.|++.. |-. +-. +. .+|+.|++..|..+.
T Consensus 189 ~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 189 HLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred HhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccc
Confidence 3566666554 344445566666666665544 211 000 00 466777777666554
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=69.73 E-value=2.9 Score=35.93 Aligned_cols=49 Identities=29% Similarity=0.259 Sum_probs=35.8
Q ss_pred CEEccCCCccccc--hhhcCCCCCCEEccccccccccCCCCC----------CCccEEcccc
Q 043750 1 YLYLSKNNFERIP--KSIIQLSKLSCLYLSYCGKLQSLPKLP----------CSLHKLHAHH 50 (149)
Q Consensus 1 ~L~L~~~~~~~lP--~si~~L~~L~~L~L~~c~~L~~lP~l~----------~~L~~L~~~~ 50 (149)
+|||++|++...+ .-++.|+.|..|+++.|. +.++-..+ .+|++|++..
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeeccc
Confidence 4899999988777 458889999999998887 66553222 4677776543
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=69.14 E-value=2.1 Score=35.30 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=32.4
Q ss_pred EEccCCC--c--cccchhhcCCCCCCEEccccccccccCCCCC------CCccEEcccccccc
Q 043750 2 LYLSKNN--F--ERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP------CSLHKLHAHHCTAL 54 (149)
Q Consensus 2 L~L~~~~--~--~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~------~~L~~L~~~~C~sL 54 (149)
|+|+|+. + ..+-.-....+.|..|+|++|-.|+. +.. .-|++|.+..|.-+
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCC
Confidence 5666652 2 12323346778888888888887764 332 46788888888643
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=65.52 E-value=3.7 Score=32.71 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=36.1
Q ss_pred CEEccCC--Ccc-ccchhhcCCCCCCEEccccccccccCCCC---C--CCccEEccccccccc
Q 043750 1 YLYLSKN--NFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKL---P--CSLHKLHAHHCTALE 55 (149)
Q Consensus 1 ~L~L~~~--~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l---~--~~L~~L~~~~C~sL~ 55 (149)
+|.++.| .+. .++.....+++|++|+|++++ ++-+..+ . .+|..|+..+|+..+
T Consensus 69 kL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 69 KLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccc
Confidence 4667777 432 566666777888888888777 5543333 2 567788888887665
No 60
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.96 E-value=5.5 Score=20.29 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=12.4
Q ss_pred CCCCCEEccccccccccCC
Q 043750 19 LSKLSCLYLSYCGKLQSLP 37 (149)
Q Consensus 19 L~~L~~L~L~~c~~L~~lP 37 (149)
|++|+.|+|++++ ++.+.
T Consensus 1 L~~L~~L~L~~Nk-I~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNK-IKKIE 18 (26)
T ss_pred CCccCEEECCCCc-cceec
Confidence 4678888888777 55443
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.80 E-value=3.6 Score=31.87 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=22.3
Q ss_pred hcCCCCCCEEccccccccc-----cCCCCCCCccEEccccccccc
Q 043750 16 IIQLSKLSCLYLSYCGKLQ-----SLPKLPCSLHKLHAHHCTALE 55 (149)
Q Consensus 16 i~~L~~L~~L~L~~c~~L~-----~lP~l~~~L~~L~~~~C~sL~ 55 (149)
+.+++.++.|.+.+|+.+. .|-.+.++|+.|++.+|+.++
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 4455556666666666543 233344566666666666543
No 62
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=61.74 E-value=5.4 Score=19.26 Aligned_cols=12 Identities=33% Similarity=0.227 Sum_probs=6.6
Q ss_pred CCCCEEcccccc
Q 043750 20 SKLSCLYLSYCG 31 (149)
Q Consensus 20 ~~L~~L~L~~c~ 31 (149)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 466777777665
No 63
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=60.73 E-value=2.1 Score=36.42 Aligned_cols=40 Identities=40% Similarity=0.414 Sum_probs=32.3
Q ss_pred CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCCC
Q 043750 1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKLP 40 (149)
Q Consensus 1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l~ 40 (149)
.|||+.|+|..| |..+++|.+|-.|-+-+..+++.||+-.
T Consensus 95 rLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 95 RLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred eecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 378999999877 7789999999988887766699888643
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.13 E-value=8.8 Score=31.81 Aligned_cols=49 Identities=35% Similarity=0.360 Sum_probs=32.8
Q ss_pred CEEccCCCccc---cchhhcCCCCCCEEccccccc---cccCCCCC-CCccEEcccc
Q 043750 1 YLYLSKNNFER---IPKSIIQLSKLSCLYLSYCGK---LQSLPKLP-CSLHKLHAHH 50 (149)
Q Consensus 1 ~L~L~~~~~~~---lP~si~~L~~L~~L~L~~c~~---L~~lP~l~-~~L~~L~~~~ 50 (149)
.|||.+|.+.. +=.-+.+|++|+.|+|+.+.- +.++| +| .+|+.|-+.|
T Consensus 75 elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 75 ELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNG 130 (418)
T ss_pred hhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcC
Confidence 37888987654 333467899999999987652 33445 34 6777775544
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=48.43 E-value=3 Score=38.30 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=39.5
Q ss_pred EccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccC
Q 043750 3 YLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 3 ~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~ 59 (149)
+.+.|.++.+-+++.-|+.|+.|+|++++ ++....+. +.|++||+.. ..|..+|.
T Consensus 170 ~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~ 226 (1096)
T KOG1859|consen 170 SFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSY-NCLRHVPQ 226 (1096)
T ss_pred hcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhccccccccccc-chhccccc
Confidence 45667788888899999999999999887 55544332 5677777753 33666654
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=46.59 E-value=7 Score=35.39 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=12.5
Q ss_pred EEccCCC-c-cccchhhcC-CCCCCEEcccc
Q 043750 2 LYLSKNN-F-ERIPKSIIQ-LSKLSCLYLSY 29 (149)
Q Consensus 2 L~L~~~~-~-~~lP~si~~-L~~L~~L~L~~ 29 (149)
||++|.. | ...|.-|+. |+.|+.|.+.+
T Consensus 127 LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~ 157 (699)
T KOG3665|consen 127 LDISGSELFSNGWPKKIGTMLPSLRSLVISG 157 (699)
T ss_pred cCccccchhhccHHHHHhhhCcccceEEecC
Confidence 5555543 2 233333432 45555555543
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=37.84 E-value=26 Score=27.35 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=28.6
Q ss_pred CEEccCCCccccchhhcC-CCCCCEEccccccccccCCCC
Q 043750 1 YLYLSKNNFERIPKSIIQ-LSKLSCLYLSYCGKLQSLPKL 39 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~-L~~L~~L~L~~c~~L~~lP~l 39 (149)
+|.|.+|+|..|-..+.. +.+|..|.|.++. ++.+-++
T Consensus 68 tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl 106 (233)
T KOG1644|consen 68 TLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDL 106 (233)
T ss_pred eEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhc
Confidence 478899999998666765 4679999998866 6665443
No 68
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=36.48 E-value=14 Score=21.43 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=12.1
Q ss_pred ccCCCCCCcccccc
Q 043750 124 LPGNEIPKWFCFQS 137 (149)
Q Consensus 124 lPGs~IP~WF~~qs 137 (149)
-||..|-+||+|--
T Consensus 15 ~pGaDisDyFNYGf 28 (45)
T PF05182_consen 15 KPGADISDYFNYGF 28 (45)
T ss_pred CCCCChhhhcCCCC
Confidence 59999999999854
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=35.29 E-value=5.5 Score=34.12 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=34.6
Q ss_pred CCCCEEccccccccccCC-----CCCCCccEEccccccccccccCCCCCCCCCCCCeeEecCCCCCchhh
Q 043750 20 SKLSCLYLSYCGKLQSLP-----KLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNV 84 (149)
Q Consensus 20 ~~L~~L~L~~c~~L~~lP-----~l~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~~L~~~~ 84 (149)
..|+.|.+.+|.....=| ..-+++++|.+.+|..+....-.....+...+.++++.+|.++....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~ 207 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS 207 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH
Confidence 467777787776433211 11156777777777755432221111122234567777777776444
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=34.38 E-value=26 Score=23.36 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=18.0
Q ss_pred ccccch-hhcCCCCCCEEccccccccccCCCCC----CCccEEcc
Q 043750 9 FERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHA 48 (149)
Q Consensus 9 ~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~ 48 (149)
+..++. .+.+...|+.+.+.+ .+..+++.. .+|+.+.+
T Consensus 46 ~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 46 LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEE
T ss_pred ccccceeeeecccccccccccc--ccccccccccccccccccccc
Confidence 555555 355666777777754 355555432 34555544
No 71
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.66 E-value=28 Score=36.38 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.0
Q ss_pred EccCCCccccchh-hcCCCCCCEEcccc
Q 043750 3 YLSKNNFERIPKS-IIQLSKLSCLYLSY 29 (149)
Q Consensus 3 ~L~~~~~~~lP~s-i~~L~~L~~L~L~~ 29 (149)
||++|+|..||.. +..|.+|+.|+|++
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsg 28 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSG 28 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeC
Confidence 6899999999985 78899999999985
No 72
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=30.65 E-value=33 Score=17.29 Aligned_cols=12 Identities=33% Similarity=0.124 Sum_probs=7.7
Q ss_pred CCCCEEcccccc
Q 043750 20 SKLSCLYLSYCG 31 (149)
Q Consensus 20 ~~L~~L~L~~c~ 31 (149)
++|++|+|+++.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 356777777665
No 73
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=28.94 E-value=23 Score=29.85 Aligned_cols=15 Identities=33% Similarity=0.942 Sum_probs=12.0
Q ss_pred cCCCCCCccccccCC
Q 043750 125 PGNEIPKWFCFQSMG 139 (149)
Q Consensus 125 PGs~IP~WF~~qs~g 139 (149)
-|.+||+||+|--.|
T Consensus 335 v~arI~e~~sy~~V~ 349 (466)
T KOG0636|consen 335 VGARIPEWFSYPEVV 349 (466)
T ss_pred eccccCcccccceee
Confidence 456999999997655
No 74
>KOG3435 consensus Mitochondrial/chloroplast ribosomal protein L54/L37 [Translation, ribosomal structure and biogenesis]
Probab=28.52 E-value=22 Score=25.18 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=13.5
Q ss_pred EEEccCCCCCCcccccc
Q 043750 121 FAILPGNEIPKWFCFQS 137 (149)
Q Consensus 121 ~~~lPGs~IP~WF~~qs 137 (149)
.-++|++|.|+|.-+-.
T Consensus 68 ~kiLPdseyPdwLw~l~ 84 (127)
T KOG3435|consen 68 PKILPDSEYPDWLWKLL 84 (127)
T ss_pred CccCCCCcCcchhHhhC
Confidence 45799999999976544
Done!