Query 043750
Match_columns 149
No_of_seqs 183 out of 1512
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 98.3 9.8E-07 3.4E-11 69.8 7.2 78 2-81 211-291 (328)
2 4fcg_A Uncharacterized protein 98.2 2.1E-06 7.1E-11 67.9 6.1 80 1-83 187-269 (328)
3 4b8c_D Glucose-repressible alc 98.1 4E-06 1.4E-10 73.3 6.3 74 1-78 251-327 (727)
4 2ell_A Acidic leucine-rich nuc 97.9 9E-06 3.1E-10 57.6 4.3 50 2-52 29-82 (168)
5 4g8a_A TOLL-like receptor 4; l 97.9 1.3E-05 4.5E-10 66.9 5.6 56 1-58 56-116 (635)
6 1dce_A Protein (RAB geranylger 97.9 1.6E-05 5.4E-10 67.8 6.0 70 2-77 446-518 (567)
7 2r9u_A Variable lymphocyte rec 97.9 3.4E-05 1.2E-09 55.6 7.0 74 1-77 37-115 (174)
8 3g39_A Variable lymphocyte rec 97.8 4.1E-05 1.4E-09 54.9 6.8 73 1-76 34-111 (170)
9 1jl5_A Outer protein YOPM; leu 97.8 3.5E-05 1.2E-09 63.6 6.5 56 1-59 135-190 (454)
10 2xwt_C Thyrotropin receptor; s 97.8 2.1E-05 7.3E-10 58.8 4.6 59 1-59 35-98 (239)
11 2je0_A Acidic leucine-rich nuc 97.8 8.9E-06 3E-10 56.5 2.2 75 1-78 21-99 (149)
12 1jl5_A Outer protein YOPM; leu 97.8 4.1E-05 1.4E-09 63.2 6.5 71 1-77 177-247 (454)
13 1a9n_A U2A', U2A'; complex (nu 97.8 2.5E-05 8.5E-10 56.0 4.5 73 2-77 47-123 (176)
14 2wfh_A SLIT homolog 2 protein 97.8 7.4E-05 2.5E-09 54.6 7.1 55 2-58 36-94 (193)
15 4b8c_D Glucose-repressible alc 97.7 3.1E-05 1E-09 67.7 5.4 73 1-77 228-303 (727)
16 1dce_A Protein (RAB geranylger 97.7 3.9E-05 1.3E-09 65.3 5.6 73 1-77 467-543 (567)
17 4g8a_A TOLL-like receptor 4; l 97.7 5.5E-05 1.9E-09 63.1 6.4 56 1-58 80-140 (635)
18 1xeu_A Internalin C; cellular 97.7 7.2E-05 2.5E-09 57.2 6.5 48 2-51 68-116 (263)
19 2v9t_B SLIT homolog 2 protein 97.7 9.2E-05 3.2E-09 55.1 6.6 49 2-51 61-114 (220)
20 2je0_A Acidic leucine-rich nuc 97.7 3.1E-05 1.1E-09 53.7 3.7 74 1-77 46-123 (149)
21 3e6j_A Variable lymphocyte rec 97.7 8.8E-05 3E-09 55.5 6.4 30 2-31 45-75 (229)
22 2ell_A Acidic leucine-rich nuc 97.7 2.6E-05 8.9E-10 55.2 3.3 74 1-77 53-130 (168)
23 4ezg_A Putative uncharacterize 97.7 8.9E-05 3E-09 54.0 6.2 73 1-77 48-122 (197)
24 2z7x_B TOLL-like receptor 1, v 97.7 5.2E-05 1.8E-09 62.6 5.5 50 2-52 50-101 (520)
25 3e6j_A Variable lymphocyte rec 97.6 0.00013 4.5E-09 54.5 6.9 73 1-77 68-145 (229)
26 1w8a_A SLIT protein; signaling 97.6 0.00013 4.5E-09 53.0 6.6 34 2-36 34-69 (192)
27 3zyi_A Leucine-rich repeat-con 97.6 9.8E-05 3.3E-09 60.3 6.5 30 2-31 104-134 (452)
28 2xwt_C Thyrotropin receptor; s 97.6 6.9E-05 2.3E-09 55.9 5.1 77 1-81 59-144 (239)
29 2o6r_A Variable lymphocyte rec 97.6 0.00019 6.4E-09 51.2 7.1 49 2-51 33-86 (177)
30 4fmz_A Internalin; leucine ric 97.6 0.00011 3.9E-09 57.3 6.3 48 2-51 71-120 (347)
31 3vq2_A TLR4, TOLL-like recepto 97.6 0.00011 3.8E-09 61.6 6.3 49 2-51 61-114 (606)
32 4ezg_A Putative uncharacterize 97.6 9.6E-05 3.3E-09 53.8 5.2 74 1-78 92-170 (197)
33 1h6u_A Internalin H; cell adhe 97.6 0.00012 4E-09 57.2 5.9 48 2-51 68-117 (308)
34 1p9a_G Platelet glycoprotein I 97.5 0.00017 5.8E-09 55.9 6.7 49 2-51 82-134 (290)
35 2z81_A CD282 antigen, TOLL-lik 97.5 0.00013 4.3E-09 60.5 6.2 49 2-51 392-441 (549)
36 3a79_B TLR6, VLRB.59, TOLL-lik 97.5 0.00012 4E-09 61.4 6.1 30 2-31 57-87 (562)
37 1xeu_A Internalin C; cellular 97.5 0.00015 5E-09 55.5 6.1 56 1-59 45-102 (263)
38 2z80_A TOLL-like receptor 2, v 97.5 8.4E-05 2.9E-09 58.6 4.9 55 2-57 105-165 (353)
39 3zyj_A Leucine-rich repeat-con 97.5 0.00014 4.9E-09 59.1 6.3 29 2-30 93-122 (440)
40 3g06_A SSPH2 (leucine-rich rep 97.5 0.00013 4.5E-09 62.9 6.1 48 2-52 45-92 (622)
41 3g06_A SSPH2 (leucine-rich rep 97.5 0.00014 4.8E-09 62.7 6.2 69 2-77 226-294 (622)
42 2o6s_A Variable lymphocyte rec 97.5 0.00027 9.4E-09 51.5 6.9 35 2-37 33-68 (208)
43 2o6r_A Variable lymphocyte rec 97.5 0.0003 1E-08 50.1 7.0 74 1-77 56-134 (177)
44 3rfs_A Internalin B, repeat mo 97.5 0.00026 8.9E-09 54.0 6.9 30 2-31 90-120 (272)
45 2o6s_A Variable lymphocyte rec 97.5 0.00031 1.1E-08 51.2 6.9 49 2-51 57-110 (208)
46 2o6q_A Variable lymphocyte rec 97.5 0.0003 1E-08 53.5 7.1 49 2-51 114-167 (270)
47 3rfs_A Internalin B, repeat mo 97.5 0.00029 1E-08 53.7 6.9 49 2-51 114-167 (272)
48 3m19_A Variable lymphocyte rec 97.5 0.0003 1E-08 52.9 6.9 14 17-30 104-117 (251)
49 2v70_A SLIT-2, SLIT homolog 2 97.5 0.00025 8.5E-09 52.7 6.3 15 16-30 77-91 (220)
50 2wfh_A SLIT homolog 2 protein 97.4 0.00035 1.2E-08 51.0 7.0 73 1-76 58-135 (193)
51 3rgz_A Protein brassinosteroid 97.4 0.00018 6E-09 62.8 6.1 77 1-79 636-716 (768)
52 3m19_A Variable lymphocyte rec 97.4 0.00035 1.2E-08 52.6 7.0 74 1-77 111-189 (251)
53 4eco_A Uncharacterized protein 97.4 0.00023 7.9E-09 60.9 6.7 46 2-48 493-543 (636)
54 4fmz_A Internalin; leucine ric 97.4 0.00021 7.2E-09 55.8 5.9 57 1-59 92-150 (347)
55 1h6u_A Internalin H; cell adhe 97.4 0.0002 6.9E-09 55.8 5.8 29 2-31 90-118 (308)
56 3vq2_A TLR4, TOLL-like recepto 97.4 0.00027 9.4E-09 59.2 7.0 50 2-52 85-139 (606)
57 1w8a_A SLIT protein; signaling 97.4 0.00034 1.2E-08 50.8 6.7 72 1-76 58-135 (192)
58 3v47_A TOLL-like receptor 5B a 97.4 0.00023 8E-09 57.5 6.2 75 1-77 34-113 (455)
59 2v9t_B SLIT homolog 2 protein 97.4 0.0003 1E-08 52.3 6.3 57 1-59 36-97 (220)
60 2z80_A TOLL-like receptor 2, v 97.4 0.0002 7E-09 56.4 5.7 77 2-80 81-162 (353)
61 4ay9_X Follicle-stimulating ho 97.4 0.00018 6.2E-09 56.9 5.3 59 1-59 34-97 (350)
62 3zyi_A Leucine-rich repeat-con 97.4 0.00035 1.2E-08 57.0 7.0 49 2-51 80-133 (452)
63 2v70_A SLIT-2, SLIT homolog 2 97.4 0.00047 1.6E-08 51.2 7.2 72 1-76 85-162 (220)
64 1p9a_G Platelet glycoprotein I 97.4 0.00037 1.3E-08 54.0 6.8 57 1-59 104-165 (290)
65 1ozn_A Reticulon 4 receptor; N 97.4 0.00038 1.3E-08 53.1 6.7 29 2-30 37-66 (285)
66 2z7x_B TOLL-like receptor 1, v 97.4 0.00021 7E-09 59.0 5.5 71 1-77 25-100 (520)
67 2z62_A TOLL-like receptor 4, v 97.4 0.0003 1E-08 53.4 6.1 49 2-51 57-110 (276)
68 2z66_A Variable lymphocyte rec 97.4 0.00042 1.4E-08 53.3 6.9 49 2-51 180-233 (306)
69 2z63_A TOLL-like receptor 4, v 97.4 0.00026 8.7E-09 58.7 6.1 30 2-31 57-87 (570)
70 1ogq_A PGIP-2, polygalacturona 97.4 0.00018 6E-09 56.2 4.7 50 2-51 55-111 (313)
71 3cvr_A Invasion plasmid antige 97.4 0.00028 9.7E-09 60.2 6.3 46 2-51 125-170 (571)
72 1h6t_A Internalin B; cell adhe 97.3 0.0003 1E-08 54.5 5.8 48 2-51 95-144 (291)
73 1h6t_A Internalin B; cell adhe 97.3 0.00028 9.5E-09 54.6 5.5 48 2-51 73-122 (291)
74 1o6v_A Internalin A; bacterial 97.3 0.00024 8.2E-09 58.2 5.4 48 2-51 73-122 (466)
75 2z66_A Variable lymphocyte rec 97.3 0.00022 7.6E-09 54.9 4.9 49 2-51 83-136 (306)
76 2ifg_A High affinity nerve gro 97.3 0.00039 1.3E-08 54.5 6.5 72 1-76 35-112 (347)
77 3o6n_A APL1; leucine-rich repe 97.3 0.00015 5.1E-09 57.8 4.0 49 2-51 253-305 (390)
78 3a79_B TLR6, VLRB.59, TOLL-lik 97.3 0.00035 1.2E-08 58.4 6.4 75 1-77 80-156 (562)
79 1xku_A Decorin; proteoglycan, 97.3 0.00044 1.5E-08 53.9 6.6 72 2-77 197-273 (330)
80 4glp_A Monocyte differentiatio 97.3 0.00034 1.2E-08 54.2 5.9 56 2-59 202-268 (310)
81 3zyj_A Leucine-rich repeat-con 97.3 0.00038 1.3E-08 56.6 6.3 52 2-54 117-173 (440)
82 1xku_A Decorin; proteoglycan, 97.3 0.0003 1E-08 54.8 5.3 49 2-51 57-110 (330)
83 2r9u_A Variable lymphocyte rec 97.3 0.00025 8.5E-09 51.0 4.5 51 1-52 61-116 (174)
84 4ecn_A Leucine-rich repeat pro 97.3 0.00041 1.4E-08 62.1 6.7 29 2-30 733-763 (876)
85 2o6q_A Variable lymphocyte rec 97.3 0.00063 2.1E-08 51.7 6.9 48 2-50 42-94 (270)
86 1ozn_A Reticulon 4 receptor; N 97.3 0.00052 1.8E-08 52.3 6.4 49 2-51 110-163 (285)
87 2z81_A CD282 antigen, TOLL-lik 97.3 0.00033 1.1E-08 58.0 5.7 9 69-77 125-133 (549)
88 2z62_A TOLL-like receptor 4, v 97.3 0.00048 1.6E-08 52.3 6.2 51 1-52 32-87 (276)
89 2ft3_A Biglycan; proteoglycan, 97.3 0.0005 1.7E-08 53.6 6.3 49 2-51 83-133 (332)
90 4eco_A Uncharacterized protein 97.3 0.00051 1.7E-08 58.8 6.8 75 1-80 517-600 (636)
91 3cvr_A Invasion plasmid antige 97.2 0.00047 1.6E-08 58.9 6.4 45 2-50 85-129 (571)
92 3e4g_A ATP synthase subunit S, 97.2 0.00012 4E-09 53.9 2.2 80 1-82 65-154 (176)
93 2xot_A Amphoterin-induced prot 97.2 0.00051 1.8E-08 54.6 6.2 49 2-51 69-122 (361)
94 2id5_A Lingo-1, leucine rich r 97.2 0.00059 2E-08 55.7 6.7 49 2-51 61-114 (477)
95 2ifg_A High affinity nerve gro 97.2 0.00052 1.8E-08 53.8 6.1 72 2-76 13-89 (347)
96 1a9n_A U2A', U2A'; complex (nu 97.2 0.00017 5.8E-09 51.5 2.9 57 1-59 68-130 (176)
97 3t6q_A CD180 antigen; protein- 97.2 0.00051 1.7E-08 57.6 6.3 50 2-52 283-336 (606)
98 1ds9_A Outer arm dynein; leuci 97.2 7.5E-06 2.6E-10 59.8 -4.4 49 1-51 52-103 (198)
99 3o6n_A APL1; leucine-rich repe 97.2 0.00075 2.5E-08 53.7 7.0 49 2-51 98-151 (390)
100 1wwl_A Monocyte differentiatio 97.2 0.00015 5.2E-09 56.4 2.6 35 2-37 100-137 (312)
101 1ogq_A PGIP-2, polygalacturona 97.2 0.00035 1.2E-08 54.4 4.7 7 128-134 259-265 (313)
102 3g39_A Variable lymphocyte rec 97.2 0.00037 1.3E-08 49.7 4.3 50 1-51 58-112 (170)
103 4ay9_X Follicle-stimulating ho 97.2 0.00041 1.4E-08 54.8 4.8 70 2-75 182-254 (350)
104 3t6q_A CD180 antigen; protein- 97.1 0.00069 2.4E-08 56.8 6.4 49 2-51 38-91 (606)
105 1ziw_A TOLL-like receptor 3; i 97.1 0.00087 3E-08 57.0 7.0 49 2-51 78-131 (680)
106 3oja_B Anopheles plasmodium-re 97.1 0.00087 3E-08 56.7 6.9 49 2-51 104-157 (597)
107 3oja_B Anopheles plasmodium-re 97.1 0.00083 2.9E-08 56.8 6.7 74 1-77 79-157 (597)
108 1m9s_A Internalin B; cell inva 97.1 0.00065 2.2E-08 58.3 6.1 48 2-51 70-119 (605)
109 3rgz_A Protein brassinosteroid 97.1 0.00064 2.2E-08 59.3 6.0 74 2-77 471-548 (768)
110 3bz5_A Internalin-J, INLJ; leu 97.1 0.00086 3E-08 55.3 6.5 50 1-52 46-96 (457)
111 4ecn_A Leucine-rich repeat pro 97.1 0.0008 2.7E-08 60.2 6.7 76 1-81 757-841 (876)
112 3o53_A Protein LRIM1, AGAP0063 97.1 0.00056 1.9E-08 53.3 5.1 48 2-50 149-200 (317)
113 1m9s_A Internalin B; cell inva 97.1 0.00062 2.1E-08 58.4 5.8 47 2-50 92-140 (605)
114 3j0a_A TOLL-like receptor 5; m 97.1 0.00058 2E-08 60.2 5.8 35 2-36 29-64 (844)
115 2ft3_A Biglycan; proteoglycan, 97.1 0.00088 3E-08 52.2 6.2 76 1-78 221-305 (332)
116 3o53_A Protein LRIM1, AGAP0063 97.1 0.00038 1.3E-08 54.2 4.0 74 1-79 173-249 (317)
117 2xot_A Amphoterin-induced prot 97.1 0.00096 3.3E-08 53.0 6.2 56 1-58 43-104 (361)
118 3j0a_A TOLL-like receptor 5; m 97.0 0.0011 3.7E-08 58.4 6.6 30 2-31 78-108 (844)
119 3oja_A Leucine-rich immune mol 97.0 0.00062 2.1E-08 56.5 4.5 56 1-58 38-96 (487)
120 1ziw_A TOLL-like receptor 3; i 96.9 0.0013 4.4E-08 56.0 6.3 50 2-52 54-108 (680)
121 1wwl_A Monocyte differentiatio 96.9 0.00077 2.6E-08 52.3 4.3 76 1-77 125-211 (312)
122 3bz5_A Internalin-J, INLJ; leu 96.9 0.0016 5.3E-08 53.7 6.3 46 2-51 69-116 (457)
123 1ds9_A Outer arm dynein; leuci 96.9 8.4E-05 2.9E-09 54.1 -1.4 66 8-77 36-103 (198)
124 2ast_B S-phase kinase-associat 96.8 0.00012 4.2E-09 56.8 -0.9 29 2-30 123-152 (336)
125 2z63_A TOLL-like receptor 4, v 96.8 0.0017 5.8E-08 53.7 5.8 50 2-51 426-480 (570)
126 3v47_A TOLL-like receptor 5B a 96.8 0.0016 5.5E-08 52.5 5.4 30 2-31 84-114 (455)
127 2id5_A Lingo-1, leucine rich r 96.8 0.0023 7.9E-08 52.1 6.3 49 2-51 229-282 (477)
128 1o6v_A Internalin A; bacterial 96.7 0.0022 7.4E-08 52.4 5.8 72 1-78 291-364 (466)
129 2ast_B S-phase kinase-associat 96.7 0.00021 7E-09 55.5 -0.5 79 1-82 97-183 (336)
130 3oja_A Leucine-rich immune mol 96.7 0.0012 4.1E-08 54.8 4.0 75 1-80 173-250 (487)
131 4glp_A Monocyte differentiatio 96.3 0.0031 1.1E-07 48.7 3.7 71 1-76 228-303 (310)
132 2ca6_A RAN GTPase-activating p 95.6 0.0028 9.5E-08 50.4 0.9 15 16-30 183-197 (386)
133 3rw6_A Nuclear RNA export fact 95.6 0.0074 2.5E-07 46.8 3.1 48 3-51 149-206 (267)
134 3sb4_A Hypothetical leucine ri 94.9 0.02 7E-07 44.5 3.8 36 2-39 231-267 (329)
135 2ca6_A RAN GTPase-activating p 94.9 0.0082 2.8E-07 47.6 1.4 50 2-52 192-255 (386)
136 1z7x_W Ribonuclease inhibitor; 94.4 0.028 9.7E-07 45.1 3.5 50 2-52 33-96 (461)
137 2p1m_B Transport inhibitor res 94.0 0.017 5.9E-07 47.9 1.5 51 2-52 110-167 (594)
138 2p1m_B Transport inhibitor res 93.5 0.026 9E-07 46.8 1.8 75 2-81 135-225 (594)
139 3goz_A Leucine-rich repeat-con 93.3 0.061 2.1E-06 42.3 3.5 11 21-31 168-178 (362)
140 1z7x_W Ribonuclease inhibitor; 93.1 0.052 1.8E-06 43.6 2.8 50 1-51 89-152 (461)
141 3goz_A Leucine-rich repeat-con 92.8 0.074 2.5E-06 41.8 3.4 12 20-31 109-120 (362)
142 3rw6_A Nuclear RNA export fact 92.7 0.072 2.5E-06 41.2 3.1 50 1-51 174-230 (267)
143 3rfe_A Platelet glycoprotein I 92.4 0.077 2.6E-06 36.3 2.6 46 2-50 13-64 (130)
144 3rfe_A Platelet glycoprotein I 91.8 0.19 6.6E-06 34.2 4.2 27 2-28 36-63 (130)
145 3e4g_A ATP synthase subunit S, 91.4 0.071 2.4E-06 38.8 1.5 55 1-56 89-154 (176)
146 3un9_A NLR family member X1; l 90.0 0.11 3.7E-06 41.6 1.6 18 14-31 177-194 (372)
147 3ogk_B Coronatine-insensitive 89.9 0.062 2.1E-06 44.5 0.1 57 18-78 461-524 (592)
148 3ogk_B Coronatine-insensitive 89.2 0.39 1.4E-05 39.6 4.5 30 2-31 197-231 (592)
149 3sb4_A Hypothetical leucine ri 87.3 0.58 2E-05 36.0 4.1 35 2-39 255-291 (329)
150 3un9_A NLR family member X1; l 85.8 0.21 7.3E-06 39.9 0.9 51 1-52 187-250 (372)
151 4h09_A Hypothetical leucine ri 80.0 2 6.7E-05 33.5 4.4 50 9-59 274-340 (379)
152 4fs7_A Uncharacterized protein 79.8 0.76 2.6E-05 36.4 1.9 51 29-83 318-371 (394)
153 1io0_A Tropomodulin; LRR prote 77.3 0.79 2.7E-05 32.6 1.2 47 1-48 69-128 (185)
154 1io0_A Tropomodulin; LRR prote 74.9 0.97 3.3E-05 32.1 1.1 51 1-52 40-104 (185)
155 4fdw_A Leucine rich hypothetic 66.4 6.6 0.00023 31.4 4.4 29 9-38 168-197 (401)
156 4gt6_A Cell surface protein; l 65.1 7.2 0.00025 30.6 4.4 8 50-57 309-316 (394)
157 2ra8_A Uncharacterized protein 55.5 3.3 0.00011 32.9 0.7 51 1-52 256-318 (362)
158 2ra8_A Uncharacterized protein 49.5 13 0.00044 29.4 3.3 37 12-49 164-201 (362)
159 4gt6_A Cell surface protein; l 44.7 13 0.00046 29.0 2.7 65 16-84 284-363 (394)
160 2lz0_A Uncharacterized protein 33.8 13 0.00045 23.9 0.9 31 27-58 16-49 (100)
161 4fdw_A Leucine rich hypothetic 33.6 37 0.0013 27.0 3.7 27 2-28 185-211 (401)
162 3nct_A Protein PSIB; DNA bindi 22.8 38 0.0013 23.5 1.6 18 116-133 71-88 (144)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.34 E-value=9.8e-07 Score=69.77 Aligned_cols=78 Identities=24% Similarity=0.344 Sum_probs=35.6
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCCC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNY 78 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~ 78 (149)
|+|++|.+..+|..+..+++|+.|+|++|.....+|... .+|+.|++.+|..+..+|..+. .+..++.|++.+|.
T Consensus 211 L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGCV 288 (328)
T ss_dssp EEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG--GCTTCCEEECTTCT
T ss_pred EEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh--cCCCCCEEeCCCCC
Confidence 444444444444444444555555555444444444332 3444555555544444443211 22334455555555
Q ss_pred CCc
Q 043750 79 NLD 81 (149)
Q Consensus 79 ~L~ 81 (149)
.+.
T Consensus 289 ~~~ 291 (328)
T 4fcg_A 289 NLS 291 (328)
T ss_dssp TCC
T ss_pred chh
Confidence 443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.20 E-value=2.1e-06 Score=67.90 Aligned_cols=80 Identities=26% Similarity=0.269 Sum_probs=64.4
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
+|+|++|++..+|.+++++++|+.|+|++|. +..+|... ++|+.|++.+|.....+|..+. .+..++.|++.+|
T Consensus 187 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~n 263 (328)
T 4fcg_A 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKRLILKDC 263 (328)
T ss_dssp EEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT--CCCCCCEEECTTC
T ss_pred EEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhc--CCCCCCEEECCCC
Confidence 4788999999999999999999999999988 77787643 6899999999988888776432 3456778999998
Q ss_pred CCCchh
Q 043750 78 YNLDRN 83 (149)
Q Consensus 78 ~~L~~~ 83 (149)
..+...
T Consensus 264 ~~~~~~ 269 (328)
T 4fcg_A 264 SNLLTL 269 (328)
T ss_dssp TTCCBC
T ss_pred Cchhhc
Confidence 776543
No 3
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.09 E-value=4e-06 Score=73.29 Aligned_cols=74 Identities=28% Similarity=0.290 Sum_probs=56.5
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
+|+|++|.|..+|.+|+.|++|++|+|++|. +..||... .+|++|++.++ .+..+|..+ ..+..+..|++.++
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~--~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEF--GNLCNLQFLGVEGN 326 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSST--TSCTTCCCEECTTS
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhh--hcCCCccEEeCCCC
Confidence 4788888888888888888888888888888 77888654 57888888887 466777642 34556778888776
Q ss_pred C
Q 043750 78 Y 78 (149)
Q Consensus 78 ~ 78 (149)
.
T Consensus 327 ~ 327 (727)
T 4b8c_D 327 P 327 (727)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.92 E-value=9e-06 Score=57.64 Aligned_cols=50 Identities=28% Similarity=0.324 Sum_probs=31.7
Q ss_pred EEccCCCcc--ccchhhcCCCCCCEEccccccccccCCCCC--CCccEEcccccc
Q 043750 2 LYLSKNNFE--RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCT 52 (149)
Q Consensus 2 L~L~~~~~~--~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~ 52 (149)
|+|++|.+. .+|..+..+++|++|+|++|. +..++.+. .+|+.|++.+|.
T Consensus 29 L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR 82 (168)
T ss_dssp EECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC
T ss_pred EECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc
Confidence 667777766 677666777777777777666 55553332 456666666554
No 5
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.89 E-value=1.3e-05 Score=66.89 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=38.0
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEcccccccccccc
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLS 58 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~ 58 (149)
+|||++|+|..+|+ ++.++++|++|+|++|. ++.+|.- ..+|++|++.++. ++.+|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~ 116 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLA 116 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCC
Confidence 37778888877764 57778888888887776 7777642 2567777776653 44444
No 6
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=1.6e-05 Score=67.78 Aligned_cols=70 Identities=26% Similarity=0.255 Sum_probs=40.6
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
|+|++|++..+|. ++.+++|+.|+|++|. +..+|... .+|+.|++.++. ++.+|. ...+..+..|+++++
T Consensus 446 L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~---l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 446 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVDG---VANLPRLQELLLCNN 518 (567)
T ss_dssp EECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG---GTTCSSCCEEECCSS
T ss_pred EEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCcc---cCCCCCCcEEECCCC
Confidence 5667777766765 6777777777777665 66666533 456666666553 444442 122334455555554
No 7
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.88 E-value=3.4e-05 Score=55.63 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=54.4
Q ss_pred CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|+|++|.|..+ |..+.++++|++|+|++++ +..+|.. ..+|+.|++.++. ++.++.. ....+..+..|++.
T Consensus 37 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRG-AFDNLKSLTHIYLY 113 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCSEEECC
T ss_pred EEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHH-HhccccCCCEEEeC
Confidence 478999999887 5578999999999999987 8888863 2689999998764 6666652 11234456677776
Q ss_pred CC
Q 043750 76 GN 77 (149)
Q Consensus 76 nC 77 (149)
+.
T Consensus 114 ~N 115 (174)
T 2r9u_A 114 NN 115 (174)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 8
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.85 E-value=4.1e-05 Score=54.88 Aligned_cols=73 Identities=23% Similarity=0.219 Sum_probs=53.2
Q ss_pred CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|+|++|.|..+ |..+.++++|++|+|++++ +..+|.- ..+|+.|++.+.. ++.++... ...+..++.|++.
T Consensus 34 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~ 110 (170)
T 3g39_A 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGA-FDNLKSLTHIWLL 110 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECC
T ss_pred EEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHH-hcCCCCCCEEEeC
Confidence 478999999888 5568999999999999987 8888863 2678999998764 66666521 1233456677775
Q ss_pred C
Q 043750 76 G 76 (149)
Q Consensus 76 n 76 (149)
+
T Consensus 111 ~ 111 (170)
T 3g39_A 111 N 111 (170)
T ss_dssp S
T ss_pred C
Confidence 5
No 9
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.80 E-value=3.5e-05 Score=63.64 Aligned_cols=56 Identities=34% Similarity=0.478 Sum_probs=47.8
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEccccccccccccC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~~ 59 (149)
+|++++|.+..+| +++++++|++|++++|. +..+|..+.+|+.|++.+|. ++.+|.
T Consensus 135 ~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~-l~~l~~ 190 (454)
T 1jl5_A 135 YLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQ-LEELPE 190 (454)
T ss_dssp EEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCC
T ss_pred EEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCc-CCcCcc
Confidence 4789999999999 59999999999999997 88999998999999998874 555553
No 10
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.78 E-value=2.1e-05 Score=58.76 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=40.3
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccC
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~ 59 (149)
+|+|++|++..+|. .+.++++|++|++++++.+..+|.. ..+|+.|++.+|..++.++.
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 36777777777766 5777777777777777667666642 25677777777666666653
No 11
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.78 E-value=8.9e-06 Score=56.55 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=50.5
Q ss_pred CEEccCCCcc--ccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750 1 YLYLSKNNFE--RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG 76 (149)
Q Consensus 1 ~L~L~~~~~~--~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n 76 (149)
+|++++|.+. .+|..+..+++|++|++++|. +..++.+. .+|+.|++.+|.--..+|.... ....+..|++++
T Consensus 21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~ls~ 97 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAE--KCPNLTHLNLSG 97 (149)
T ss_dssp EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHH--HCTTCCEEECTT
T ss_pred EEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhh--hCCCCCEEECCC
Confidence 3788888887 888888889999999998886 77774443 6788888887753222433211 123455676666
Q ss_pred CC
Q 043750 77 NY 78 (149)
Q Consensus 77 C~ 78 (149)
|.
T Consensus 98 N~ 99 (149)
T 2je0_A 98 NK 99 (149)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 12
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.77 E-value=4.1e-05 Score=63.21 Aligned_cols=71 Identities=27% Similarity=0.423 Sum_probs=53.2
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
+|++++|.+..+| .++++++|+.|++++|. +..+|..+.+|+.|++.+|. ++.+|.. .....++.+++.+|
T Consensus 177 ~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~-l~~lp~~---~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 177 FIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNI-LEELPEL---QNLPFLTTIYADNN 247 (454)
T ss_dssp EEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSC-CSSCCCC---TTCTTCCEEECCSS
T ss_pred EEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCc-CCccccc---CCCCCCCEEECCCC
Confidence 4788889888888 58999999999999988 88899988899999998883 5566642 12233445555443
No 13
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.76 E-value=2.5e-05 Score=55.95 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=38.6
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
|+|++|.+..+ ..+..+++|++|+|++|. +..+|.- .++|+.|++.++. +..++..........+..+++.++
T Consensus 47 L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 47 IDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp EECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS
T ss_pred EECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC
Confidence 56666666655 346666666666666665 5565532 1566666666553 344443111112234456666554
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.76 E-value=7.4e-05 Score=54.64 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=37.5
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCC----CCCccEEcccccccccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLS 58 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~ 58 (149)
|+|++|.|..+|..+.++++|+.|+|+++. +..++.- ..+|+.|++.++. ++.++
T Consensus 36 L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~ 94 (193)
T 2wfh_A 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIP 94 (193)
T ss_dssp EECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCC
T ss_pred EECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeC
Confidence 677777777777777788888888887776 6666642 1567777776653 44433
No 15
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.73 E-value=3.1e-05 Score=67.73 Aligned_cols=73 Identities=27% Similarity=0.212 Sum_probs=57.2
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
.|+|++|.+..+|..+..+++|++|+|++|. +..||... .+|++|++.++. |..+|..+. .+..+..|++.+|
T Consensus 228 ~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~--~l~~L~~L~L~~N 303 (727)
T 4b8c_D 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELG--SCFQLKYFYFFDN 303 (727)
T ss_dssp EEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGG--GGTTCSEEECCSS
T ss_pred EEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhc--CCCCCCEEECCCC
Confidence 3899999999999999999999999999997 88998743 689999999886 667776432 2334555555544
No 16
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.71 E-value=3.9e-05 Score=65.33 Aligned_cols=73 Identities=22% Similarity=0.203 Sum_probs=57.9
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccc--cCCCCCCCCCCCCeeEecC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESL--SGLFPKSYESCPPRFELNG 76 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~--~~~~~~~~~~~~~~l~~~n 76 (149)
+|+|++|.+..+|.++++|++|+.|+|+++. +..+|.+. ++|+.|++.++. +..+ |..+ ..+..+..|++.+
T Consensus 467 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l--~~l~~L~~L~L~~ 542 (567)
T 1dce_A 467 HLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNR-LQQSAAIQPL--VSCPRLVLLNLQG 542 (567)
T ss_dssp EEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGG--GGCTTCCEEECTT
T ss_pred EeecCcccccccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCCC-CCCCCCcHHH--hcCCCCCEEEecC
Confidence 4899999999999999999999999999998 88899553 789999998874 6655 4322 2344567777766
Q ss_pred C
Q 043750 77 N 77 (149)
Q Consensus 77 C 77 (149)
+
T Consensus 543 N 543 (567)
T 1dce_A 543 N 543 (567)
T ss_dssp S
T ss_pred C
Confidence 4
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.70 E-value=5.5e-05 Score=63.14 Aligned_cols=56 Identities=38% Similarity=0.325 Sum_probs=37.3
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEcccccccccccc
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLS 58 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~ 58 (149)
+|+|++|+|..+|+ .+.+|++|++|+|++|+ ++.+|.- ..+|++|++.+|. ++.++
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~ 140 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLE 140 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCST
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCC
Confidence 46777777777765 47777777777777776 7777642 2567777776653 44443
No 18
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.70 E-value=7.2e-05 Score=57.21 Aligned_cols=48 Identities=27% Similarity=0.395 Sum_probs=29.9
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC-CCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP-CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~-~~L~~L~~~~C 51 (149)
|+|++|.+..+|. +.++++|+.|+|++|+ +..+|.+. .+|+.|++.+|
T Consensus 68 L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N 116 (263)
T 1xeu_A 68 LHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNN 116 (263)
T ss_dssp EECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSS
T ss_pred EECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEEEccCC
Confidence 5666666666665 6666666666666665 66655544 45666666655
No 19
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.67 E-value=9.2e-05 Score=55.08 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=25.9
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|.+..+ |..+.++++|++|+|+++. +..+|.. ..+|+.|++.++
T Consensus 61 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp EECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCC
Confidence 45555555544 4455555555555555554 5555542 145555555544
No 20
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.67 E-value=3.1e-05 Score=53.72 Aligned_cols=74 Identities=22% Similarity=0.177 Sum_probs=52.0
Q ss_pred CEEccCCCccccchhhcCCCCCCEEcccccccccc-CCCC---CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQS-LPKL---PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG 76 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~-lP~l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n 76 (149)
+|+|++|.+..+ ..+..+++|++|+|++|. +.. +|.. ..+|+.|++.+|. ++.++..........++.+++++
T Consensus 46 ~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 46 FLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp EEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTT
T ss_pred EEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcC
Confidence 478888888888 668889999999999888 665 6665 3688899988875 55443211122334566788777
Q ss_pred C
Q 043750 77 N 77 (149)
Q Consensus 77 C 77 (149)
|
T Consensus 123 N 123 (149)
T 2je0_A 123 C 123 (149)
T ss_dssp C
T ss_pred C
Confidence 6
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.67 E-value=8.8e-05 Score=55.46 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=11.9
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~ 31 (149)
|+|++|.+..+ |..+..+++|+.|+|+++.
T Consensus 45 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 34444444333 2233444444444444433
No 22
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.66 E-value=2.6e-05 Score=55.20 Aligned_cols=74 Identities=24% Similarity=0.256 Sum_probs=56.2
Q ss_pred CEEccCCCccccchhhcCCCCCCEEcccccccccc-CCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQS-LPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG 76 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~-lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n 76 (149)
+|+|++|.+..+ ..+..+++|++|+|++|. +.. +|... ++|+.|++.+| .++.++.......+..+..|++.+
T Consensus 53 ~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 53 FLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp EEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCS
T ss_pred EEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeC
Confidence 488999999988 779999999999999998 666 66553 68999999988 466665322223345677888877
Q ss_pred C
Q 043750 77 N 77 (149)
Q Consensus 77 C 77 (149)
|
T Consensus 130 N 130 (168)
T 2ell_A 130 C 130 (168)
T ss_dssp S
T ss_pred C
Confidence 6
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.65 E-value=8.9e-05 Score=53.96 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=50.9
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
+|++++|.+..+| .+..+++|++|++++| .+..++.+. ++|+.|++.+|.--...+..+ ..+..++.|++++|
T Consensus 48 ~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 48 YITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTSLTLLDISHS 122 (197)
T ss_dssp EEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCC--TTCTTCCEEECCSS
T ss_pred EEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhh--cCCCCCCEEEecCC
Confidence 4788999999998 6999999999999998 477776554 688889888865222222221 22344566766665
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.65 E-value=5.2e-05 Score=62.58 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=28.8
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC-CCCccEEcccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHCT 52 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C~ 52 (149)
|+|++|++..+ |..+.++++|++|+|+++. +..+|.. ..+|++|++.+|.
T Consensus 50 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 50 LIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCHPTVNLKHLDLSFNA 101 (520)
T ss_dssp EECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECCCCCCCSEEECCSSC
T ss_pred EecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCccccCCccEEeccCCc
Confidence 55666666554 4456666666666666654 5555543 2456666666554
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.63 E-value=0.00013 Score=54.46 Aligned_cols=73 Identities=25% Similarity=0.292 Sum_probs=54.6
Q ss_pred CEEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|+|++|.+..+|.. +..+++|+.|+|+++. +..+|.. ..+|+.|++.++. ++.+|... ..+..++.|++.
T Consensus 68 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~--~~l~~L~~L~L~ 143 (229)
T 3e6j_A 68 ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGI--ERLTHLTHLALD 143 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTG--GGCTTCSEEECC
T ss_pred EEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCccc--ccCCCCCEEECC
Confidence 488999999999865 5899999999999997 8888753 2689999998764 66776533 233455667665
Q ss_pred CC
Q 043750 76 GN 77 (149)
Q Consensus 76 nC 77 (149)
++
T Consensus 144 ~N 145 (229)
T 3e6j_A 144 QN 145 (229)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 26
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.62 E-value=0.00013 Score=53.03 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=17.2
Q ss_pred EEccCCCccccchh--hcCCCCCCEEccccccccccC
Q 043750 2 LYLSKNNFERIPKS--IIQLSKLSCLYLSYCGKLQSL 36 (149)
Q Consensus 2 L~L~~~~~~~lP~s--i~~L~~L~~L~L~~c~~L~~l 36 (149)
|+|++|++..+|.. +..+++|++|+|+++. +..+
T Consensus 34 L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 69 (192)
T 1w8a_A 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGI 69 (192)
T ss_dssp EECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCB
T ss_pred EECCCCcCCccCCccccccCCCCCEEECCCCC-CCCc
Confidence 45555555555432 4555555555555554 4433
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.61 E-value=9.8e-05 Score=60.30 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=12.9
Q ss_pred EEccCCCccccc-hhhcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFERIP-KSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~ 31 (149)
|+|++|.+..++ ..+.++++|++|+|+++.
T Consensus 104 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 444444444333 234444444444444443
No 28
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.61 E-value=6.9e-05 Score=55.94 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=53.6
Q ss_pred CEEccCCC-ccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCC---e
Q 043750 1 YLYLSKNN-FERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPP---R 71 (149)
Q Consensus 1 ~L~L~~~~-~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~---~ 71 (149)
+|+|++|+ +..+|. .+.++++|++|+|++|.+++.+|.. ..+|+.|++.++. ++.+|.... ...+. .
T Consensus 59 ~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~---l~~L~~L~~ 134 (239)
T 2xwt_C 59 RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTK---VYSTDIFFI 134 (239)
T ss_dssp EEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTT---CCBCCSEEE
T ss_pred EEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccccccc---ccccccccE
Confidence 47889997 888876 6889999999999986668888853 2678889888775 555665222 22333 6
Q ss_pred eEecCCCCCc
Q 043750 72 FELNGNYNLD 81 (149)
Q Consensus 72 l~~~nC~~L~ 81 (149)
+++.++.++.
T Consensus 135 L~l~~N~~l~ 144 (239)
T 2xwt_C 135 LEITDNPYMT 144 (239)
T ss_dssp EEEESCTTCC
T ss_pred EECCCCcchh
Confidence 6666664443
No 29
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.60 E-value=0.00019 Score=51.17 Aligned_cols=49 Identities=33% Similarity=0.388 Sum_probs=24.6
Q ss_pred EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|++++|++..+|.. +..+++|++|+|+++. +..+|.. ..+|+.|++.++
T Consensus 33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC
Confidence 45555555555443 3555555555555554 4554431 134555555443
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.58 E-value=0.00011 Score=57.35 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=24.0
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C 51 (149)
|++++|.+..+|. +.++++|++|++++|. +..+|.+. .+|+.|++.+|
T Consensus 71 L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 71 LNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNED 120 (347)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTS
T ss_pred EEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCC
Confidence 4555555555554 5555555555555553 44444332 34555555444
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.56 E-value=0.00011 Score=61.63 Aligned_cols=49 Identities=37% Similarity=0.314 Sum_probs=23.0
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccC-CCCC---CCccEEccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C 51 (149)
|+|++|.+..+ |..+.++++|++|+|++|. +..+ |+.. .+|++|++.+|
T Consensus 61 L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS
T ss_pred EeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC
Confidence 45555555544 3345555555555555554 3333 3321 34444444443
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.56 E-value=9.6e-05 Score=53.77 Aligned_cols=74 Identities=9% Similarity=0.006 Sum_probs=52.1
Q ss_pred CEEccCCCccc-cchhhcCCCCCCEEcccccccccc-CCCC---CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFER-IPKSIIQLSKLSCLYLSYCGKLQS-LPKL---PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~-lP~si~~L~~L~~L~L~~c~~L~~-lP~l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|++++|.+.. .|..+..+++|++|+|++|. +.. .|.. .++|+.|++.+|..+..++... ....++.|++.
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~---~l~~L~~L~l~ 167 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIMPLK---TLPELKSLNIQ 167 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGG---GCSSCCEEECT
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccHhhc---CCCCCCEEECC
Confidence 47888888875 67788899999999999887 543 3321 2678899998887666665322 23446677777
Q ss_pred CCC
Q 043750 76 GNY 78 (149)
Q Consensus 76 nC~ 78 (149)
+|.
T Consensus 168 ~n~ 170 (197)
T 4ezg_A 168 FDG 170 (197)
T ss_dssp TBC
T ss_pred CCC
Confidence 663
No 33
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.55 E-value=0.00012 Score=57.16 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=23.4
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C 51 (149)
|+|++|.+..+|. +..+++|++|+|++|. +..+|.+. .+|+.|++.+|
T Consensus 68 L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 68 LELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTST 117 (308)
T ss_dssp EECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTS
T ss_pred EEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCC
Confidence 4555555555544 5555555555555554 44444332 34455544443
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.55 E-value=0.00017 Score=55.90 Aligned_cols=49 Identities=31% Similarity=0.303 Sum_probs=24.6
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|.+..+|..+..+++|++|+|+++. +..+|.- ..+|+.|++.++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC
Confidence 455555555555555555555555555554 4444421 134555554443
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.54 E-value=0.00013 Score=60.52 Aligned_cols=49 Identities=29% Similarity=0.402 Sum_probs=25.9
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCC-CCCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C 51 (149)
|+|++|++..+|..+..+++|++|+|++|. +..+|.. +.+|+.|++.+|
T Consensus 392 L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp EECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS
T ss_pred EECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCC
Confidence 555555555555555555555555555555 5444432 234444444443
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.54 E-value=0.00012 Score=61.38 Aligned_cols=30 Identities=37% Similarity=0.358 Sum_probs=14.5
Q ss_pred EEccCCCccccc-hhhcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFERIP-KSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~ 31 (149)
|+|++|.+..+| ..+.++++|++|+|++|.
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 87 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNR 87 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCC
Confidence 445555554443 244555555555555443
No 37
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.54 E-value=0.00015 Score=55.50 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=45.6
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~ 59 (149)
+|++++|++..+| .+..+++|+.|+|++|. +..+|.+. .+|+.|++.++. ++.++.
T Consensus 45 ~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~-l~~l~~ 102 (263)
T 1xeu_A 45 NFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNR-LKNLNG 102 (263)
T ss_dssp EEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CSCCTT
T ss_pred EEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCc-cCCcCc
Confidence 4789999999998 69999999999999997 88888643 689999998874 555443
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.53 E-value=8.4e-05 Score=58.61 Aligned_cols=55 Identities=25% Similarity=0.259 Sum_probs=35.0
Q ss_pred EEccCCCccccchh-hcCCCCCCEEccccccccccCCC--C---CCCccEEccccccccccc
Q 043750 2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPK--L---PCSLHKLHAHHCTALESL 57 (149)
Q Consensus 2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~--l---~~~L~~L~~~~C~sL~~~ 57 (149)
|+|++|.+..+|.. ++++++|++|+|+++. +..+|. . ..+|+.|++.+|..++.+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccccc
Confidence 66777777766665 6677777777777665 666665 2 256677777666544444
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.53 E-value=0.00014 Score=59.09 Aligned_cols=29 Identities=31% Similarity=0.304 Sum_probs=11.9
Q ss_pred EEccCCCccccc-hhhcCCCCCCEEccccc
Q 043750 2 LYLSKNNFERIP-KSIIQLSKLSCLYLSYC 30 (149)
Q Consensus 2 L~L~~~~~~~lP-~si~~L~~L~~L~L~~c 30 (149)
|+|++|.+..++ ..+.++++|++|+|++|
T Consensus 93 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EECCCCcCCccChhhccCCccCCEEECCCC
Confidence 344444444333 23444444444444443
No 40
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.50 E-value=0.00013 Score=62.86 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=27.0
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEcccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCT 52 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~ 52 (149)
|++++|++..+|.++. ++|+.|+|++|. +..+|..+++|+.|++.+|.
T Consensus 45 L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~ 92 (622)
T 3g06_A 45 LNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPALPPELRTLEVSGNQ 92 (622)
T ss_dssp EECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCCCCTTCCEEEECSCC
T ss_pred EEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCCcCCCCCEEEcCCCc
Confidence 5556666666665444 455555555554 55555555555555555543
No 41
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.50 E-value=0.00014 Score=62.71 Aligned_cols=69 Identities=32% Similarity=0.371 Sum_probs=31.8
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
|+|++|.+..+| ..+++|+.|+|++|. +..+|..+.+|+.|++.+| .++.+|..+ ..+..+..|++.++
T Consensus 226 L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l--~~l~~L~~L~L~~N 294 (622)
T 3g06_A 226 LIVSGNRLTSLP---VLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESL--IHLSSETTVNLEGN 294 (622)
T ss_dssp EECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCCSCCGGG--GGSCTTCEEECCSC
T ss_pred EEccCCccCcCC---CCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCC-CCCcCCHHH--hhccccCEEEecCC
Confidence 344444444444 233445555555553 5555554455555555554 244444321 12334455555554
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.50 E-value=0.00027 Score=51.50 Aligned_cols=35 Identities=40% Similarity=0.593 Sum_probs=15.2
Q ss_pred EEccCCCccccchh-hcCCCCCCEEccccccccccCC
Q 043750 2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLP 37 (149)
Q Consensus 2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP 37 (149)
|+|++|++..+|.. +..+++|++|+|+++. +..+|
T Consensus 33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 68 (208)
T 2o6s_A 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLP 68 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC
T ss_pred EEcCCCccCcCChhhhcccccCcEEECCCCc-cCccC
Confidence 44444444444432 3444444444444443 44443
No 43
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.50 E-value=0.0003 Score=50.10 Aligned_cols=74 Identities=30% Similarity=0.332 Sum_probs=53.1
Q ss_pred CEEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|+|++|.+..+|.. +..+++|+.|+|+++. +..+|.- ..+|+.|++.++ .++.++... ......+..+++.
T Consensus 56 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 56 KLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLH 132 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECC
T ss_pred EEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHH-hcCCcccCEEEec
Confidence 478899999888765 5889999999999887 7777753 268889998887 466666521 1123456677776
Q ss_pred CC
Q 043750 76 GN 77 (149)
Q Consensus 76 nC 77 (149)
++
T Consensus 133 ~N 134 (177)
T 2o6r_A 133 TN 134 (177)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.48 E-value=0.00026 Score=53.98 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=12.1
Q ss_pred EEccCCCccccchh-hcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~ 31 (149)
|+|++|.+..+|.. +..+++|++|+|++|.
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 34444444433332 2444444444444443
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.47 E-value=0.00031 Score=51.21 Aligned_cols=49 Identities=35% Similarity=0.480 Sum_probs=29.4
Q ss_pred EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|++..+|.. +..+++|++|+|+++. +..+|.. ..+|+.|++.++
T Consensus 57 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCC
Confidence 56666666666554 4666666666666665 5555542 145666666554
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.46 E-value=0.0003 Score=53.46 Aligned_cols=49 Identities=39% Similarity=0.507 Sum_probs=22.9
Q ss_pred EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|.+..+|.. +..+++|++|+|++|. +..+|.- ..+|+.|++.++
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC
Confidence 45555555544432 4455555555555554 4444431 134444444443
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.46 E-value=0.00029 Score=53.69 Aligned_cols=49 Identities=33% Similarity=0.412 Sum_probs=29.9
Q ss_pred EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|++..+|.. +..+++|++|+|++|. +..+|.- ..+|+.|++.+|
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCC
Confidence 56666666666554 5666667777776664 5555541 245666666655
No 48
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.46 E-value=0.0003 Score=52.90 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=5.5
Q ss_pred cCCCCCCEEccccc
Q 043750 17 IQLSKLSCLYLSYC 30 (149)
Q Consensus 17 ~~L~~L~~L~L~~c 30 (149)
..+++|++|+|+++
T Consensus 104 ~~l~~L~~L~L~~N 117 (251)
T 3m19_A 104 DHLTQLDKLYLGGN 117 (251)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cccCCCCEEEcCCC
Confidence 33344444444333
No 49
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.45 E-value=0.00025 Score=52.69 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=5.8
Q ss_pred hcCCCCCCEEccccc
Q 043750 16 IIQLSKLSCLYLSYC 30 (149)
Q Consensus 16 i~~L~~L~~L~L~~c 30 (149)
+.++++|+.|+|+++
T Consensus 77 ~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 77 FEGASGVNEILLTSN 91 (220)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hCCCCCCCEEECCCC
Confidence 333333333333333
No 50
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.45 E-value=0.00035 Score=50.97 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=54.5
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|+|++|.+..++. .+..+++|+.|+|+++. +..+|.- ..+|+.|++.++. ++.++... ...+..+..+++.
T Consensus 58 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGA-FNDLSALSHLAIG 134 (193)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-TTTCTTCCEEECC
T ss_pred EEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhh-hhcCccccEEEeC
Confidence 48999999998875 59999999999999998 8888753 2689999998865 66666521 1123445667665
Q ss_pred C
Q 043750 76 G 76 (149)
Q Consensus 76 n 76 (149)
+
T Consensus 135 ~ 135 (193)
T 2wfh_A 135 A 135 (193)
T ss_dssp S
T ss_pred C
Confidence 4
No 51
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.44 E-value=0.00018 Score=62.82 Aligned_cols=77 Identities=21% Similarity=0.153 Sum_probs=59.8
Q ss_pred CEEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750 1 YLYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG 76 (149)
Q Consensus 1 ~L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n 76 (149)
+|||++|++. .+|.+|++++.|+.|+|+++.--..+|+.. .+|+.|++.++.--..+|.... .+..++.|++++
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~ls~ 713 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS--ALTMLTEIDLSN 713 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG--GCCCCSEEECCS
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh--CCCCCCEEECcC
Confidence 3899999987 889999999999999999998555888754 6789999998875556665332 344567888887
Q ss_pred CCC
Q 043750 77 NYN 79 (149)
Q Consensus 77 C~~ 79 (149)
+.=
T Consensus 714 N~l 716 (768)
T 3rgz_A 714 NNL 716 (768)
T ss_dssp SEE
T ss_pred Ccc
Confidence 643
No 52
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.44 E-value=0.00035 Score=52.58 Aligned_cols=74 Identities=28% Similarity=0.293 Sum_probs=56.0
Q ss_pred CEEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|+|++|++..+|.. +..+++|+.|+|+++. +..+|.- ..+|+.|++.++. ++.++.. ....+..++.+++.
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHG-AFDRLGKLQTITLF 187 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc-CCccCHH-HHhCCCCCCEEEee
Confidence 488999999999876 5899999999999997 8888862 2689999999874 5555541 11233456778876
Q ss_pred CC
Q 043750 76 GN 77 (149)
Q Consensus 76 nC 77 (149)
++
T Consensus 188 ~N 189 (251)
T 3m19_A 188 GN 189 (251)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.43 E-value=0.00023 Score=60.91 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=24.7
Q ss_pred EEccCCCccccchhhc--CCCCCCEEccccccccccCCCCC---CCccEEcc
Q 043750 2 LYLSKNNFERIPKSII--QLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHA 48 (149)
Q Consensus 2 L~L~~~~~~~lP~si~--~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~ 48 (149)
|+|++|++..+|..+. .+++|+.|+|++|. +..+|... .+|+.|++
T Consensus 493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp EECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEEC
T ss_pred EECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEEC
Confidence 4555555555555554 55555555555555 44455432 34555555
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.43 E-value=0.00021 Score=55.84 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=41.4
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~ 59 (149)
+|+|++|.+..+| .+..+++|++|++++|. +..+|.+. .+|+.|++.+|..+..++.
T Consensus 92 ~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 150 (347)
T 4fmz_A 92 NLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSP 150 (347)
T ss_dssp EEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGG
T ss_pred EEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchhhccCCceeEEECCCCCCcccccc
Confidence 4778888888776 48888888888888877 77776543 6778888887765554443
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.43 E-value=0.0002 Score=55.79 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=11.8
Q ss_pred EEccCCCccccchhhcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~ 31 (149)
|+|++|.+..+| .+..+++|+.|+|++|.
T Consensus 90 L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 90 LELSGNPLKNVS-AIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp EECCSCCCSCCG-GGTTCTTCCEEECTTSC
T ss_pred EEccCCcCCCch-hhcCCCCCCEEECCCCC
Confidence 344444444433 24444444444444433
No 56
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.43 E-value=0.00027 Score=59.24 Aligned_cols=50 Identities=32% Similarity=0.396 Sum_probs=27.4
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCCC----CCccEEcccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHCT 52 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C~ 52 (149)
|+|++|.+..+ |.+++++++|++|+|++|. +..+|... .+|+.|++.+|.
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSC
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCc
Confidence 55666665554 5556666666666666655 44444221 455566665553
No 57
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.43 E-value=0.00034 Score=50.78 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=50.9
Q ss_pred CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccc-cCCCCCCCCCCCCeeEe
Q 043750 1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESL-SGLFPKSYESCPPRFEL 74 (149)
Q Consensus 1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~-~~~~~~~~~~~~~~l~~ 74 (149)
+|+|++|.+..+ |..+.++++|++|+|+++. +..+|.- ..+|+.|++.++. +..+ |..+ ..+..+..+++
T Consensus 58 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L 133 (192)
T 1w8a_A 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSF--EHLNSLTSLNL 133 (192)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSS--TTCTTCCEEEC
T ss_pred EEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHh--hcCCCCCEEEe
Confidence 478999999877 6789999999999999988 7777653 2678899988875 4433 3322 22344567776
Q ss_pred cC
Q 043750 75 NG 76 (149)
Q Consensus 75 ~n 76 (149)
.+
T Consensus 134 ~~ 135 (192)
T 1w8a_A 134 AS 135 (192)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.42 E-value=0.00023 Score=57.50 Aligned_cols=75 Identities=20% Similarity=0.114 Sum_probs=48.0
Q ss_pred CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCC-C---CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|+|++|.+..+ |..+.++++|++|+|++|.....+|. . ..+|++|++.+|.-....|..+. .+..++.|++.
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~ 111 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN--GLANLEVLTLT 111 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT--TCTTCCEEECT
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc--CcccCCEEeCC
Confidence 478888888876 66788888899999888874445543 2 26788888887753222233221 23345566665
Q ss_pred CC
Q 043750 76 GN 77 (149)
Q Consensus 76 nC 77 (149)
+|
T Consensus 112 ~n 113 (455)
T 3v47_A 112 QC 113 (455)
T ss_dssp TS
T ss_pred CC
Confidence 55
No 59
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.41 E-value=0.0003 Score=52.25 Aligned_cols=57 Identities=25% Similarity=0.258 Sum_probs=43.7
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccC-CCCC---CCccEEccccccccccccC
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C~sL~~~~~ 59 (149)
+|+|++|++..+|. .+..+++|+.|+|+++. +..+ |+.. .+|+.|++.++. ++.++.
T Consensus 36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~ 97 (220)
T 2v9t_B 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK-ITELPK 97 (220)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC-CCCCCT
T ss_pred EEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc-CCccCH
Confidence 37889999988876 68899999999999988 6666 4432 678899988764 555554
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.41 E-value=0.0002 Score=56.36 Aligned_cols=77 Identities=23% Similarity=0.148 Sum_probs=37.4
Q ss_pred EEccCCCccccc-hhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750 2 LYLSKNNFERIP-KSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG 76 (149)
Q Consensus 2 L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n 76 (149)
|+|++|.+..++ ..+.++++|++|+|++|. +..+|.- ..+|+.|++.++. ++.++..........++.|++.+
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEE
T ss_pred EECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCC
Confidence 455555555443 345555555555555554 4444431 2456666665542 33444311112233455666666
Q ss_pred CCCC
Q 043750 77 NYNL 80 (149)
Q Consensus 77 C~~L 80 (149)
|..+
T Consensus 159 n~~~ 162 (353)
T 2z80_A 159 MDTF 162 (353)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6433
No 61
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.40 E-value=0.00018 Score=56.89 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=43.5
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC----CCccEEccccccccccccC
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C~sL~~~~~ 59 (149)
+|+|++|+|+.||. .+.+|++|++|+|++|+-++.+|.-. .+++.+...++..++.++.
T Consensus 34 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 48899999999987 47999999999999998667777532 3455555555666666643
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.39 E-value=0.00035 Score=56.98 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=26.2
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCC-C---CCCccEEccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C 51 (149)
|+|++|++..+ |..+.++++|+.|+|+++. +..++. . ..+|+.|++.++
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC
Confidence 56666666554 3456666666666666654 444442 1 134555555444
No 63
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.39 E-value=0.00047 Score=51.16 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=52.7
Q ss_pred CEEccCCCccccchh-hcCCCCCCEEccccccccccCC-CCC---CCccEEccccccccccc-cCCCCCCCCCCCCeeEe
Q 043750 1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLP-KLP---CSLHKLHAHHCTALESL-SGLFPKSYESCPPRFEL 74 (149)
Q Consensus 1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP-~l~---~~L~~L~~~~C~sL~~~-~~~~~~~~~~~~~~l~~ 74 (149)
+|+|++|.+..+|.. +..+++|++|+|+++. +..++ ... .+|+.|++.++. ++.+ |..+ ..+..+..+++
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L 160 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAF--DTLHSLSTLNL 160 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTT--TTCTTCCEEEC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHh--cCCCCCCEEEe
Confidence 489999999988765 8999999999999998 77774 332 689999998874 5555 3322 23345567776
Q ss_pred cC
Q 043750 75 NG 76 (149)
Q Consensus 75 ~n 76 (149)
.+
T Consensus 161 ~~ 162 (220)
T 2v70_A 161 LA 162 (220)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.39 E-value=0.00037 Score=53.97 Aligned_cols=57 Identities=30% Similarity=0.355 Sum_probs=37.8
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccC
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~ 59 (149)
+|+|++|.+..+|. .+.++++|++|+|+++. +..+|.- ..+|+.|++.++. ++.+|.
T Consensus 104 ~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~ 165 (290)
T 1p9a_G 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN-LTELPA 165 (290)
T ss_dssp EEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CSCCCT
T ss_pred EEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-CCccCH
Confidence 36777777777763 57777788888887776 6666652 2567777776653 444443
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.38 E-value=0.00038 Score=53.12 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=12.5
Q ss_pred EEccCCCccccch-hhcCCCCCCEEccccc
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYC 30 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c 30 (149)
|+|++|++..+|. .+..+++|++|+|+++
T Consensus 37 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 66 (285)
T 1ozn_A 37 IFLHGNRISHVPAASFRACRNLTILWLHSN 66 (285)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeeCCcCCccCHHHcccCCCCCEEECCCC
Confidence 3444444444432 3444444444444444
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.38 E-value=0.00021 Score=58.99 Aligned_cols=71 Identities=27% Similarity=0.222 Sum_probs=50.8
Q ss_pred CEEccCCCccccc-hhhcCCCCCCEEccccccccccC-CCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFERIP-KSIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|+|++|.+..+| ..+.++++|++|+|++|+ +..+ |+.. .+|++|++.++. ++.+|.. .+..++.|++.
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~----~l~~L~~L~L~ 98 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK-LVKISCH----PTVNLKHLDLS 98 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSC-CCEEECC----CCCCCSEEECC
T ss_pred EEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCc-eeecCcc----ccCCccEEecc
Confidence 4788999988776 578999999999999997 6666 4332 688999998873 5666653 23344555555
Q ss_pred CC
Q 043750 76 GN 77 (149)
Q Consensus 76 nC 77 (149)
+|
T Consensus 99 ~N 100 (520)
T 2z7x_B 99 FN 100 (520)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.38 E-value=0.0003 Score=53.42 Aligned_cols=49 Identities=37% Similarity=0.326 Sum_probs=26.0
Q ss_pred EEccCCCccccch-hhcCCCCCCEEccccccccccCCC-C---CCCccEEccccc
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C 51 (149)
|+|++|.+..+|. .+.++++|++|+|+++. +..++. . ..+|+.|++.++
T Consensus 57 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCC
Confidence 5666666655544 45666666666666655 444431 1 134555555443
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.37 E-value=0.00042 Score=53.33 Aligned_cols=49 Identities=33% Similarity=0.383 Sum_probs=23.0
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCCC----CCccEEccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C 51 (149)
|+|++|.+..+ |..+..+++|+.|+|++|. +..+|... .+|+.|++.++
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCC
Confidence 44555554443 3344555555555555544 44443321 34555555544
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.37 E-value=0.00026 Score=58.74 Aligned_cols=30 Identities=33% Similarity=0.298 Sum_probs=14.4
Q ss_pred EEccCCCccccc-hhhcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFERIP-KSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~ 31 (149)
|+|++|++..+| ..+.++++|++|+|+++.
T Consensus 57 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 445555554443 234455555555555444
No 70
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.37 E-value=0.00018 Score=56.19 Aligned_cols=50 Identities=34% Similarity=0.431 Sum_probs=24.3
Q ss_pred EEccCCCcc---ccchhhcCCCCCCEEccccccccc-cCCCCC---CCccEEccccc
Q 043750 2 LYLSKNNFE---RIPKSIIQLSKLSCLYLSYCGKLQ-SLPKLP---CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~---~lP~si~~L~~L~~L~L~~c~~L~-~lP~l~---~~L~~L~~~~C 51 (149)
|+|++|++. .+|..+.++++|++|+|+++.++. .+|... .+|++|++.++
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC
Confidence 455555554 355555555555555555422232 344322 34555555444
No 71
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.35 E-value=0.00028 Score=60.25 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=22.6
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C 51 (149)
|+|++|++..+|. .+++|+.|+|++|. +..+|..+.+|+.|++.+|
T Consensus 125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 125 LDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNN 170 (571)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred EECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCC
Confidence 4444555444444 34455555555544 4445544445555555444
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.34 E-value=0.0003 Score=54.45 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=23.4
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C 51 (149)
|+|++|.+..+|. +..+++|++|+|++|. +..++.+. .+|+.|++.+|
T Consensus 95 L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 95 LFLDENKVKDLSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNN 144 (291)
T ss_dssp EECCSSCCCCGGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcCCCChh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCC
Confidence 4555555555443 5555555555555554 44444332 34444444443
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.34 E-value=0.00028 Score=54.63 Aligned_cols=48 Identities=27% Similarity=0.430 Sum_probs=33.3
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C 51 (149)
|+|++|.+..+|. +.++++|++|+|++|. +..+|.+. .+|+.|++.+|
T Consensus 73 L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 73 LFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTS
T ss_pred EEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCC
Confidence 6677777777666 7777777777777776 66666543 56777777665
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.34 E-value=0.00024 Score=58.18 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=26.0
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C 51 (149)
|+|++|.+..+|. +.++++|++|++++|. +..+|.+. .+|+.|++.+|
T Consensus 73 L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 73 INFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNN 122 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS
T ss_pred EECCCCccCCchh-hhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCC
Confidence 5555665555555 5555566666665554 44444321 45555555554
No 75
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.33 E-value=0.00022 Score=54.89 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=28.7
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCC--C---CCCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK--L---PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~--l---~~~L~~L~~~~C 51 (149)
|+|++|.+..+|..+..+++|++|+++++. +..+|. . ..+|+.|++.+|
T Consensus 83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTS
T ss_pred EECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCC
Confidence 566666666666666666666666666665 555543 1 145556655554
No 76
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.33 E-value=0.00039 Score=54.49 Aligned_cols=72 Identities=24% Similarity=0.252 Sum_probs=44.6
Q ss_pred CEEccC-CCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEe
Q 043750 1 YLYLSK-NNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFEL 74 (149)
Q Consensus 1 ~L~L~~-~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~ 74 (149)
+|+|++ |.|..+|. .+.+|++|+.|+|+++. |..+|.- ..+|+.|++.+. .|..+|...- ....+..|++
T Consensus 35 ~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~--~~~~L~~l~l 110 (347)
T 2ifg_A 35 ELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV--QGLSLQELVL 110 (347)
T ss_dssp EEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT--CSCCCCEEEC
T ss_pred EEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc--ccCCceEEEe
Confidence 367775 77777764 57778888888888775 7766642 256777777764 3666654211 1112556666
Q ss_pred cC
Q 043750 75 NG 76 (149)
Q Consensus 75 ~n 76 (149)
.+
T Consensus 111 ~~ 112 (347)
T 2ifg_A 111 SG 112 (347)
T ss_dssp CS
T ss_pred eC
Confidence 44
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.33 E-value=0.00015 Score=57.84 Aligned_cols=49 Identities=29% Similarity=0.378 Sum_probs=27.0
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCCC---CCccEEccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C 51 (149)
|+|++|.+..+ |..+.++++|+.|+|++|+ +..+|... ++|+.|++.+|
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSS
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCC
Confidence 55555555543 4555666666666666554 55555432 45566665555
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.33 E-value=0.00035 Score=58.43 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=55.7
Q ss_pred CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC-CCCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
+|+|++|.+..+ |..+.++++|++|+|+++. +..+|.. ..+|+.|++.++. ++.++.......+..++.|++.++
T Consensus 80 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS
T ss_pred EEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC
Confidence 488999999887 6679999999999999988 8888875 3689999998876 555543222223455677877764
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.32 E-value=0.00044 Score=53.87 Aligned_cols=72 Identities=24% Similarity=0.313 Sum_probs=47.4
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCC--C--CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPK--L--PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG 76 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~--l--~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n 76 (149)
|+|++|.+..+ |..+..+++|+.|+|++|. +..++. + ..+|+.|++.+|. +..+|... .....++.+++.+
T Consensus 197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l--~~l~~L~~L~l~~ 272 (330)
T 1xku_A 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGL--ADHKYIQVVYLHN 272 (330)
T ss_dssp EECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC-CSSCCTTT--TTCSSCCEEECCS
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc-CccCChhh--ccCCCcCEEECCC
Confidence 67777777765 5677888888888888877 666553 2 2578888888773 55666532 2334456677665
Q ss_pred C
Q 043750 77 N 77 (149)
Q Consensus 77 C 77 (149)
|
T Consensus 273 N 273 (330)
T 1xku_A 273 N 273 (330)
T ss_dssp S
T ss_pred C
Confidence 4
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.32 E-value=0.00034 Score=54.23 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=27.5
Q ss_pred EEccCCCccccchh----hcCCCCCCEEccccccccccC-CCCC------CCccEEccccccccccccC
Q 043750 2 LYLSKNNFERIPKS----IIQLSKLSCLYLSYCGKLQSL-PKLP------CSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 2 L~L~~~~~~~lP~s----i~~L~~L~~L~L~~c~~L~~l-P~l~------~~L~~L~~~~C~sL~~~~~ 59 (149)
|+|++|++..+|.. ++.+++|++|+|+++. +..+ |... ++|+.|++.++. ++.+|.
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~ 268 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPK 268 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCS
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCchhh
Confidence 45555655544442 3455566666666555 4433 3211 355555555543 344443
No 81
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.31 E-value=0.00038 Score=56.55 Aligned_cols=52 Identities=33% Similarity=0.434 Sum_probs=26.2
Q ss_pred EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEcccccccc
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTAL 54 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL 54 (149)
|+|++|++..+|. .+..+++|+.|+|+++. +..+|.. ..+|+.|++.+|..+
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l 173 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRL 173 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTC
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCc
Confidence 5566666655554 35555556666555554 4444431 134444444444333
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.29 E-value=0.0003 Score=54.80 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=24.9
Q ss_pred EEccCCCccccch-hhcCCCCCCEEccccccccccC-CCCC---CCccEEccccc
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C 51 (149)
|+|++|++..+|. .+.++++|++|+|++|. +..+ |+.. .+|+.|++.++
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCC
Confidence 4555555555544 45555555555555554 4433 3222 34555555444
No 83
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.29 E-value=0.00025 Score=50.99 Aligned_cols=51 Identities=27% Similarity=0.357 Sum_probs=42.6
Q ss_pred CEEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEcccccc
Q 043750 1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCT 52 (149)
Q Consensus 1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~ 52 (149)
+|+|++|+|..+|.. +.++++|+.|+|+++. +..+|.- ..+|+.|++.+..
T Consensus 61 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 61 QLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 489999999999987 4899999999999987 8888863 2578888887653
No 84
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.00041 Score=62.12 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=12.1
Q ss_pred EEccCCCccccchhhc--CCCCCCEEccccc
Q 043750 2 LYLSKNNFERIPKSII--QLSKLSCLYLSYC 30 (149)
Q Consensus 2 L~L~~~~~~~lP~si~--~L~~L~~L~L~~c 30 (149)
|+|++|++..+|..+. .+++|+.|+|++|
T Consensus 733 L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp EECCSSCCCCCCGGGSTTTCTTCCEEECCSS
T ss_pred EECCCCCCccchHHhhhccCCCcCEEEeCCC
Confidence 3344444444444433 4444444444443
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.28 E-value=0.00063 Score=51.69 Aligned_cols=48 Identities=33% Similarity=0.450 Sum_probs=23.7
Q ss_pred EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEcccc
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHH 50 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~ 50 (149)
|+|++|++..+|. .+.++++|++|+|+++. +..+|.- ..+|+.|++.+
T Consensus 42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp EECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCS
T ss_pred EECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCC
Confidence 4555555555543 35555555555555554 4444431 13445554443
No 86
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.28 E-value=0.00052 Score=52.35 Aligned_cols=49 Identities=31% Similarity=0.403 Sum_probs=23.6
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|.+..+ |..+.++++|++|+|++|. +..+|.. ..+|+.|++.++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC
Confidence 45555555544 3345555555555555554 4444431 134555555443
No 87
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.28 E-value=0.00033 Score=58.00 Aligned_cols=9 Identities=0% Similarity=0.043 Sum_probs=3.9
Q ss_pred CCeeEecCC
Q 043750 69 PPRFELNGN 77 (149)
Q Consensus 69 ~~~l~~~nC 77 (149)
++.|++.+|
T Consensus 125 L~~L~L~~n 133 (549)
T 2z81_A 125 LQTLRIGNV 133 (549)
T ss_dssp CCEEEEEES
T ss_pred ccEEECCCC
Confidence 334444444
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.28 E-value=0.00048 Score=52.28 Aligned_cols=51 Identities=25% Similarity=0.308 Sum_probs=42.9
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCC--C--CCCccEEcccccc
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPK--L--PCSLHKLHAHHCT 52 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~--l--~~~L~~L~~~~C~ 52 (149)
+|+|++|++..+|. .+.++++|++|+|++|. +..++. + ..+|+.|++.++.
T Consensus 32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc
Confidence 48999999998876 79999999999999996 777775 2 2689999998774
No 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.27 E-value=0.0005 Score=53.63 Aligned_cols=49 Identities=37% Similarity=0.497 Sum_probs=25.2
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC-CCCccEEccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C 51 (149)
|+|++|.+..+ |..+.++++|++|+|+++. +..+|.. ..+|+.|++.++
T Consensus 83 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 83 LVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp EECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEECCSS
T ss_pred EECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEECCCC
Confidence 45555555544 4445555555555555554 4455433 245555555544
No 90
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.27 E-value=0.00051 Score=58.79 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=59.5
Q ss_pred CEEccCCCccccchhhcCCCCCCEEcccc------ccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCe
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSY------CGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPR 71 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~------c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~ 71 (149)
+|+|++|++..+|.++.++++|+.|+|++ +.-...+|... ++|+.|++.+|.- +.+|.... ..++.
T Consensus 517 ~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~----~~L~~ 591 (636)
T 4eco_A 517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT----PNISV 591 (636)
T ss_dssp EEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC----TTCCE
T ss_pred EEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh----CcCCE
Confidence 48999999999999999999999999954 55466777654 6899999999874 88877432 45778
Q ss_pred eEecCCCCC
Q 043750 72 FELNGNYNL 80 (149)
Q Consensus 72 l~~~nC~~L 80 (149)
|++++|.-.
T Consensus 592 L~Ls~N~l~ 600 (636)
T 4eco_A 592 LDIKDNPNI 600 (636)
T ss_dssp EECCSCTTC
T ss_pred EECcCCCCc
Confidence 998887544
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.24 E-value=0.00047 Score=58.89 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=18.2
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEcccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHH 50 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~ 50 (149)
|+|++|+|..+| ..+++|+.|+|++|. +..+|.++.+|+.|++.+
T Consensus 85 L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 85 LEITQNALISLP---ELPASLEYLDACDNR-LSTLPELPASLKHLDVDN 129 (571)
T ss_dssp EECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred EECcCCCCcccc---cccCCCCEEEccCCC-CCCcchhhcCCCEEECCC
Confidence 344444444444 223444444444443 444444223444444433
No 92
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.24 E-value=0.00012 Score=53.87 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=55.6
Q ss_pred CEEccCCCcc--ccchhhcCCCCCCEEcccccccccc-----CCCC---CCCccEEccccccccccccCCCCCCCCCCCC
Q 043750 1 YLYLSKNNFE--RIPKSIIQLSKLSCLYLSYCGKLQS-----LPKL---PCSLHKLHAHHCTALESLSGLFPKSYESCPP 70 (149)
Q Consensus 1 ~L~L~~~~~~--~lP~si~~L~~L~~L~L~~c~~L~~-----lP~l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~ 70 (149)
+|||+++.+. .+ ..+.++++|+.|+|++|..+.. |... ..+|+.|++.+|+.+..---. .......++
T Consensus 65 ~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~ 142 (176)
T 3e4g_A 65 AIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLK 142 (176)
T ss_dssp EEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCC
T ss_pred EEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCC
Confidence 4789998764 23 3478899999999999986643 4333 237999999999876531110 011235678
Q ss_pred eeEecCCCCCch
Q 043750 71 RFELNGNYNLDR 82 (149)
Q Consensus 71 ~l~~~nC~~L~~ 82 (149)
.|++++|.++..
T Consensus 143 ~L~L~~c~~Itd 154 (176)
T 3e4g_A 143 YLFLSDLPGVKE 154 (176)
T ss_dssp EEEEESCTTCCC
T ss_pred EEECCCCCCCCc
Confidence 999999999864
No 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.24 E-value=0.00051 Score=54.55 Aligned_cols=49 Identities=27% Similarity=0.301 Sum_probs=25.8
Q ss_pred EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|+|..+|. .+..+++|++|+|++++ +..+|.- ..+|+.|++.++
T Consensus 69 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCC
Confidence 5555555555543 35556666666666555 5555431 144555555544
No 94
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.24 E-value=0.00059 Score=55.70 Aligned_cols=49 Identities=27% Similarity=0.253 Sum_probs=25.6
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|.+..+ |..+.++++|++|+|+++. +..+|.- ..+|+.|++.++
T Consensus 61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTS
T ss_pred EECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCC
Confidence 45555555544 4455555555555555554 5555532 145555555544
No 95
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.23 E-value=0.00052 Score=53.78 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=53.6
Q ss_pred EEccCC-CccccchhhcCCCCCCEEccccccccccCCC--C--CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750 2 LYLSKN-NFERIPKSIIQLSKLSCLYLSYCGKLQSLPK--L--PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG 76 (149)
Q Consensus 2 L~L~~~-~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~--l--~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n 76 (149)
++++++ ++..||. |..+++|+.|+|+++.++..+|. + ..+|+.|++.++ .|+.++... ...+..+..|++++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCC
Confidence 678888 8999999 99999999999998555999985 2 378999999987 477666421 11234455666654
No 96
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.22 E-value=0.00017 Score=51.51 Aligned_cols=57 Identities=25% Similarity=0.218 Sum_probs=46.7
Q ss_pred CEEccCCCccccchhh-cCCCCCCEEccccccccccCCCC-----CCCccEEccccccccccccC
Q 043750 1 YLYLSKNNFERIPKSI-IQLSKLSCLYLSYCGKLQSLPKL-----PCSLHKLHAHHCTALESLSG 59 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si-~~L~~L~~L~L~~c~~L~~lP~l-----~~~L~~L~~~~C~sL~~~~~ 59 (149)
+|+|++|.+..+|..+ ..+++|++|+|++|. +..+|.+ .++|+.|++.++. +..+|.
T Consensus 68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 130 (176)
T 1a9n_A 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKH 130 (176)
T ss_dssp EEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTT
T ss_pred EEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHh
Confidence 4899999999999766 999999999999998 8888872 2689999998875 444443
No 97
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.22 E-value=0.00051 Score=57.61 Aligned_cols=50 Identities=28% Similarity=0.304 Sum_probs=27.4
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCC-C---CCCccEEcccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHCT 52 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C~ 52 (149)
|+|++|.+..+|.++.++++|++|++++|+ +..++. . .++|+.|++.+|.
T Consensus 283 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 283 LDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCS
T ss_pred EeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCC
Confidence 556666666666666666666666666665 433321 1 1455555555543
No 98
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.22 E-value=7.5e-06 Score=59.82 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=38.7
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccc
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHC 51 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C 51 (149)
+|+|++|.+..+| .+..+++|++|+|++|. +..+|... ++|+.|++.+|
T Consensus 52 ~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 52 HLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp EEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE
T ss_pred EEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC
Confidence 4788888888888 78888888888888887 77787654 56788877766
No 99
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.22 E-value=0.00075 Score=53.73 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=25.2
Q ss_pred EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|.+..+|. .++++++|++|+|++|. +..+|.- ..+|+.|++.++
T Consensus 98 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCC
Confidence 4555555554432 34555555555555554 5555532 245555555554
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.20 E-value=0.00015 Score=56.40 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=17.6
Q ss_pred EEccCCCcc-ccchhh--cCCCCCCEEccccccccccCC
Q 043750 2 LYLSKNNFE-RIPKSI--IQLSKLSCLYLSYCGKLQSLP 37 (149)
Q Consensus 2 L~L~~~~~~-~lP~si--~~L~~L~~L~L~~c~~L~~lP 37 (149)
|+|++|++. .+|..+ ..+++|++|+|+++. +..+|
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 137 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRD 137 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSS
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCC-Ccchh
Confidence 455555554 445544 555555555555554 44333
No 101
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.19 E-value=0.00035 Score=54.44 Aligned_cols=7 Identities=14% Similarity=0.444 Sum_probs=4.0
Q ss_pred CCCCccc
Q 043750 128 EIPKWFC 134 (149)
Q Consensus 128 ~IP~WF~ 134 (149)
.+|+||.
T Consensus 259 ~~p~~l~ 265 (313)
T 1ogq_A 259 TLPQGLT 265 (313)
T ss_dssp CCCGGGG
T ss_pred cCChHHh
Confidence 4566664
No 102
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.17 E-value=0.00037 Score=49.75 Aligned_cols=50 Identities=26% Similarity=0.297 Sum_probs=41.6
Q ss_pred CEEccCCCccccchh-hcCCCCCCEEccccccccccCCCC-C---CCccEEccccc
Q 043750 1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL-P---CSLHKLHAHHC 51 (149)
Q Consensus 1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l-~---~~L~~L~~~~C 51 (149)
+|+|++|+|..+|.. +..+++|++|+|+++. ++.+|.- . .+|+.|++.+.
T Consensus 58 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 58 RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 489999999999886 5899999999999997 8888863 2 57788877654
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.16 E-value=0.00041 Score=54.84 Aligned_cols=70 Identities=30% Similarity=0.279 Sum_probs=46.1
Q ss_pred EEccC-CCccccchh-hcCCCCCCEEccccccccccCCCC-CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 2 LYLSK-NNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 2 L~L~~-~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
|++++ |.+..||.. +.++++|+.|+|++++ ++.+|.- ..+|+.|.+.+|..++.+|... .+..+..+++.
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~---~l~~L~~l~l~ 254 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLE---KLVALMEASLT 254 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTT---TCCSCCEEECS
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCch---hCcChhhCcCC
Confidence 45553 457777764 5777888888888776 7777754 4677888877887787777532 23344555543
No 104
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.15 E-value=0.00069 Score=56.78 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=29.5
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccC-CCCC---CCccEEccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C 51 (149)
|+|++|.+..+ |..+.++++|++|+|++|. +..+ |+.. .+|+.|++.++
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCC
Confidence 66777776665 4466777777777777665 4433 3322 45666666555
No 105
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.14 E-value=0.00087 Score=57.02 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=25.0
Q ss_pred EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|++..+|. +++++++|++|+|++|. +..+|.- ..+|++|++.+|
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSS
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCC
Confidence 4555555555554 35555555555555554 4444421 134555555554
No 106
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.13 E-value=0.00087 Score=56.73 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=23.0
Q ss_pred EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|.+..+|.. ++++++|++|+|++|. +..+|.- ..+|+.|++.+|
T Consensus 104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCC
Confidence 44555555444332 3455555555555554 4444431 134555555544
No 107
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.13 E-value=0.00083 Score=56.83 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=49.7
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|+|++|.+..+|. .+..+++|++|+|++|. +..+|.- ..+|+.|++.+|. +..+|... ...+..+..|++.
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~Ls 155 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-FHNTPKLTTLSMS 155 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECC
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH-hccCCCCCEEEee
Confidence 47888888887765 78888899999998887 7776642 2678888888774 55555421 1122344555555
Q ss_pred CC
Q 043750 76 GN 77 (149)
Q Consensus 76 nC 77 (149)
+|
T Consensus 156 ~N 157 (597)
T 3oja_B 156 NN 157 (597)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.13 E-value=0.00065 Score=58.29 Aligned_cols=48 Identities=27% Similarity=0.438 Sum_probs=26.1
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C 51 (149)
|+|++|.+..+|. +..+++|+.|+|++|. +..+|.+. .+|+.|++.+|
T Consensus 70 L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 70 LFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHN 119 (605)
T ss_dssp EECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTS
T ss_pred EEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCC
Confidence 5555555555554 5555556666655554 55555432 45555555444
No 109
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.12 E-value=0.00064 Score=59.30 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=35.1
Q ss_pred EEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
|+|++|.+. .+|.++.++++|++|+|++|+-...+|+.. ++|+.|++.+|.-...+|.... ....++.+++.+|
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG--DCRSLIWLDLNTN 548 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG--GCTTCCEEECCSS
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCCCEEECCCC
Confidence 455555554 445555555555555555555333444432 4455555555543334443211 2233445555544
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.12 E-value=0.00086 Score=55.26 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=35.4
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCC-CCCCccEEcccccc
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-LPCSLHKLHAHHCT 52 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~-l~~~L~~L~~~~C~ 52 (149)
+|+|++|.+..+| ++..+++|++|+|++|. +..+|- -..+|++|++.+|.
T Consensus 46 ~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 46 SLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLDLSQNTNLTYLACDSNK 96 (457)
T ss_dssp EEECCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSC
T ss_pred EEEccCCCcccCh-hhcccCCCCEEEccCCc-CCeEccccCCCCCEEECcCCC
Confidence 3778888888777 58888888888888876 776651 12567777776654
No 111
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.0008 Score=60.23 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=60.8
Q ss_pred CEEccCCCccccchhhcCCCCCCEEcccc------ccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCe
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSY------CGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPR 71 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~------c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~ 71 (149)
+|+|++|++..+|.++..+++|+.|+|++ |.-...+|... ++|+.|++.+|. +..+|.... ..++.
T Consensus 757 ~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~----~~L~~ 831 (876)
T 4ecn_A 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT----PQLYI 831 (876)
T ss_dssp EEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC----SSSCE
T ss_pred EEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc----CCCCE
Confidence 48999999999999999999999999977 55556777543 689999999987 488887532 35778
Q ss_pred eEecCCCCCc
Q 043750 72 FELNGNYNLD 81 (149)
Q Consensus 72 l~~~nC~~L~ 81 (149)
|++++|.-..
T Consensus 832 LdLs~N~l~~ 841 (876)
T 4ecn_A 832 LDIADNPNIS 841 (876)
T ss_dssp EECCSCTTCE
T ss_pred EECCCCCCCc
Confidence 9999886443
No 112
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.11 E-value=0.00056 Score=53.26 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=22.2
Q ss_pred EEccCCCccccc-hhh-cCCCCCCEEccccccccccCCCC--CCCccEEcccc
Q 043750 2 LYLSKNNFERIP-KSI-IQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHH 50 (149)
Q Consensus 2 L~L~~~~~~~lP-~si-~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~ 50 (149)
|+|++|.+..++ ..+ ..+++|++|+|++|. +..+|.. ..+|+.|++.+
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSS 200 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCS
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCC
Confidence 455555555432 223 245555555555554 4444433 23444444443
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.11 E-value=0.00062 Score=58.42 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=22.0
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEcccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHH 50 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~ 50 (149)
|+|++|.+..+| .+..+++|+.|+|++|. +..+|.+. .+|+.|++.+
T Consensus 92 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 92 LFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGN 140 (605)
T ss_dssp EECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCS
T ss_pred EECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCCccccCCCccCEEECCC
Confidence 455555555544 35555555555555544 44443331 3444444443
No 114
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.11 E-value=0.00058 Score=60.18 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=19.6
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccC
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSL 36 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~l 36 (149)
|+|++|.+..+ |.++.++++|++|+|++|.....+
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i 64 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCcccc
Confidence 56666666544 445555666666666555444444
No 115
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.10 E-value=0.00088 Score=52.23 Aligned_cols=76 Identities=20% Similarity=0.063 Sum_probs=54.1
Q ss_pred CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCC-CCC----CCCCCCe
Q 043750 1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLF-PKS----YESCPPR 71 (149)
Q Consensus 1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~-~~~----~~~~~~~ 71 (149)
+|+|++|.+..++. .+..+++|+.|+|++|+ +..+|... .+|+.|++.++. ++.++... ... ....+..
T Consensus 221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSE
T ss_pred EEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccc
Confidence 47899999988765 78999999999999997 88888753 678999998874 66555421 100 0123456
Q ss_pred eEecCCC
Q 043750 72 FELNGNY 78 (149)
Q Consensus 72 l~~~nC~ 78 (149)
+++.++.
T Consensus 299 L~l~~N~ 305 (332)
T 2ft3_A 299 ISLFNNP 305 (332)
T ss_dssp EECCSSS
T ss_pred eEeecCc
Confidence 7776654
No 116
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.10 E-value=0.00038 Score=54.22 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=56.6
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
+|+|++|.+..+|. ...+++|+.|+|++|. +..+|... .+|+.|++.++ .++.+|... .....++.+++.++
T Consensus 173 ~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~--~~l~~L~~L~l~~N 247 (317)
T 3o53_A 173 HLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL--RFSQNLEHFDLRGN 247 (317)
T ss_dssp EEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTC--CCCTTCCEEECTTC
T ss_pred EEECCCCcCccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHh--hcCCCCCEEEccCC
Confidence 48999999998876 4569999999999998 88887543 68999999988 477777633 23456778888776
Q ss_pred CC
Q 043750 78 YN 79 (149)
Q Consensus 78 ~~ 79 (149)
.=
T Consensus 248 ~~ 249 (317)
T 3o53_A 248 GF 249 (317)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.07 E-value=0.00096 Score=52.96 Aligned_cols=56 Identities=29% Similarity=0.296 Sum_probs=44.1
Q ss_pred CEEccCCCccccchh-hc-CCCCCCEEccccccccccCCCC----CCCccEEcccccccccccc
Q 043750 1 YLYLSKNNFERIPKS-II-QLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLS 58 (149)
Q Consensus 1 ~L~L~~~~~~~lP~s-i~-~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~ 58 (149)
+|+|++|+|..+|.. +. .+++|+.|+|+++. +..+|.- ..+|+.|++.++. ++.++
T Consensus 43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~ 104 (361)
T 2xot_A 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLD 104 (361)
T ss_dssp EEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred EEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCC
Confidence 489999999988775 44 89999999999998 8888742 2689999998764 44444
No 118
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.02 E-value=0.0011 Score=58.41 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=14.3
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~ 31 (149)
|+|++|++..+ |..++++++|++|+|++|.
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 44444444433 4444555555555555444
No 119
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.99 E-value=0.00062 Score=56.52 Aligned_cols=56 Identities=27% Similarity=0.255 Sum_probs=41.9
Q ss_pred CEEccCCCccccc-hhhcCCCCCCEEccccccccccCCCC--CCCccEEcccccccccccc
Q 043750 1 YLYLSKNNFERIP-KSIIQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHHCTALESLS 58 (149)
Q Consensus 1 ~L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~C~sL~~~~ 58 (149)
+|+|++|.+..+| ..+..+++|++|+|++|. +..++.+ .++|+.|++.+|. +..++
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~ 96 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELL 96 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEE
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCC
Confidence 4789999988775 578999999999999887 6655444 2678888888773 44444
No 120
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.95 E-value=0.0013 Score=55.99 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=31.3
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEcccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCT 52 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~ 52 (149)
|+|++|.+..+ |..++++++|++|+|++|. +..+|.- ..+|++|++.+|.
T Consensus 54 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp EECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCc
Confidence 56666666544 4456667777777777665 6666652 2567777776653
No 121
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.91 E-value=0.00077 Score=52.34 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=53.3
Q ss_pred CEEccCCCccccchhhcCC-----CCCCEEccccccccccCC-CC---CCCccEEcccccccccc--ccCCCCCCCCCCC
Q 043750 1 YLYLSKNNFERIPKSIIQL-----SKLSCLYLSYCGKLQSLP-KL---PCSLHKLHAHHCTALES--LSGLFPKSYESCP 69 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L-----~~L~~L~L~~c~~L~~lP-~l---~~~L~~L~~~~C~sL~~--~~~~~~~~~~~~~ 69 (149)
+|+|++|.+..+|..+..+ ++|++|+|++|. +..+| +. ..+|+.|++.++.-... ++..........+
T Consensus 125 ~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 203 (312)
T 1wwl_A 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203 (312)
T ss_dssp EEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC
T ss_pred EEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC
Confidence 4789999998888888887 899999999988 67766 33 26889999988864332 1111111234456
Q ss_pred CeeEecCC
Q 043750 70 PRFELNGN 77 (149)
Q Consensus 70 ~~l~~~nC 77 (149)
+.|++.+|
T Consensus 204 ~~L~L~~N 211 (312)
T 1wwl_A 204 QVLALRNA 211 (312)
T ss_dssp CEEECTTS
T ss_pred CEEECCCC
Confidence 78888776
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.91 E-value=0.0016 Score=53.71 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=26.0
Q ss_pred EEccCCCccccchhhcCCCCCCEEccccccccccCCCC--CCCccEEccccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~C 51 (149)
|+|++|.+..+| ++.+++|++|++++|. +..+| + ..+|++|++.++
T Consensus 69 L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 69 LICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNCDTN 116 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECCSS
T ss_pred EEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEECCCC
Confidence 566666666654 5666666666666655 55544 2 145555555544
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.89 E-value=8.4e-05 Score=54.12 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=44.7
Q ss_pred CccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 8 NFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 8 ~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
.++.+|..+..+++|++|+|++|. +..+|.+. .+|+.|++.+|. ++.+|.... ....++.|++.+|
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~~~L~~L~L~~N 103 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKIENLDA--VADTLEELWISYN 103 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEE-ECSCSSHHH--HHHHCSEEEEEEE
T ss_pred cHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCC-cccccchhh--cCCcCCEEECcCC
Confidence 566777788889999999998886 77788443 688888888774 555554211 1123456666655
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.83 E-value=0.00012 Score=56.83 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=12.4
Q ss_pred EEccCCCcc-ccchhhcCCCCCCEEccccc
Q 043750 2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYC 30 (149)
Q Consensus 2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c 30 (149)
|+|++|.+. ..|..+.++++|++|+|++|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 344444433 33344444444444444444
No 125
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.80 E-value=0.0017 Score=53.73 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=23.6
Q ss_pred EEccCCCccc-cchhhcCCCCCCEEcccccccc-ccCCCCC---CCccEEccccc
Q 043750 2 LYLSKNNFER-IPKSIIQLSKLSCLYLSYCGKL-QSLPKLP---CSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~-lP~si~~L~~L~~L~L~~c~~L-~~lP~l~---~~L~~L~~~~C 51 (149)
|++++|.+.. .|..+.++++|+.|+|++|.-. ..+|... ++|+.|++.+|
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 4555555543 3444555555555555555421 1344322 34555555544
No 126
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.80 E-value=0.0016 Score=52.53 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=15.0
Q ss_pred EEccCCCcccc-chhhcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~ 31 (149)
|+|++|.+..+ |..++++++|++|+|++|.
T Consensus 84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp EECTTCTTCEECTTTTTTCTTCCEEECTTSC
T ss_pred EeCCCCccCccChhhccCcccCCEEeCCCCC
Confidence 44555554433 4445555555555555554
No 127
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=96.78 E-value=0.0023 Score=52.13 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=33.3
Q ss_pred EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC 51 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C 51 (149)
|+|++|++..+|. .+.++++|+.|+|+++. +..++.. ..+|+.|++.++
T Consensus 229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp EEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred EECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC
Confidence 6777777777774 57778888888888776 6665542 146666666655
No 128
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.73 E-value=0.0022 Score=52.44 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=47.1
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCC--CCCccEEccccccccccccCCCCCCCCCCCCeeEecCCC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNY 78 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~ 78 (149)
+|+|++|.+..+|. +..+++|+.|+|++|. +..++.+ .++|+.|++.+|. +..++.. ..+..++.|++.+|.
T Consensus 291 ~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l---~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 291 NLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNK-VSDVSSL---ANLTNINWLSAGHNQ 364 (466)
T ss_dssp EEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSC-CCCCGGG---TTCTTCCEEECCSSC
T ss_pred eEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCc-cCCchhh---ccCCCCCEEeCCCCc
Confidence 37788888887776 7888888888888886 6665543 2678888887773 4444321 123345566666654
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.70 E-value=0.00021 Score=55.54 Aligned_cols=79 Identities=23% Similarity=0.248 Sum_probs=47.7
Q ss_pred CEEccCCCccc--cchhhcCCCCCCEEccccccccc-cCCCC---CCCccEEcccccccccc--ccCCCCCCCCCCCCee
Q 043750 1 YLYLSKNNFER--IPKSIIQLSKLSCLYLSYCGKLQ-SLPKL---PCSLHKLHAHHCTALES--LSGLFPKSYESCPPRF 72 (149)
Q Consensus 1 ~L~L~~~~~~~--lP~si~~L~~L~~L~L~~c~~L~-~lP~l---~~~L~~L~~~~C~sL~~--~~~~~~~~~~~~~~~l 72 (149)
+|+|++|.+.. +|..+..+++|++|+|++|. +. ..|.. .++|+.|++.+|..+.. ++... .....++.|
T Consensus 97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~--~~~~~L~~L 173 (336)
T 2ast_B 97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL--SSCSRLDEL 173 (336)
T ss_dssp EEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH--HHCTTCCEE
T ss_pred EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH--hcCCCCCEE
Confidence 36777777652 77778888888888888876 43 22321 25788888888754542 22211 112345667
Q ss_pred EecCCCCCch
Q 043750 73 ELNGNYNLDR 82 (149)
Q Consensus 73 ~~~nC~~L~~ 82 (149)
++.+|.++..
T Consensus 174 ~l~~~~~l~~ 183 (336)
T 2ast_B 174 NLSWCFDFTE 183 (336)
T ss_dssp ECCCCTTCCH
T ss_pred cCCCCCCcCh
Confidence 7777755543
No 130
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.69 E-value=0.0012 Score=54.76 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=53.9
Q ss_pred CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750 1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN 77 (149)
Q Consensus 1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC 77 (149)
+|+|++|.|..+|. ...+++|+.|+|++|. +..+|... .+|+.|++.++. +..+|... .....+..+++.++
T Consensus 173 ~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l--~~l~~L~~L~l~~N 247 (487)
T 3oja_A 173 HLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL--RFSQNLEHFDLRGN 247 (487)
T ss_dssp EEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTC--CCCTTCCEEECTTC
T ss_pred EEecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccccchhh--ccCCCCCEEEcCCC
Confidence 47899999888876 4568999999999887 77776543 678899988865 66666532 23345667888776
Q ss_pred CCC
Q 043750 78 YNL 80 (149)
Q Consensus 78 ~~L 80 (149)
.-.
T Consensus 248 ~l~ 250 (487)
T 3oja_A 248 GFH 250 (487)
T ss_dssp CBC
T ss_pred CCc
Confidence 543
No 131
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.25 E-value=0.0031 Score=48.73 Aligned_cols=71 Identities=28% Similarity=0.300 Sum_probs=54.4
Q ss_pred CEEccCCCcccc-chhhcCC---CCCCEEccccccccccCCCC-CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750 1 YLYLSKNNFERI-PKSIIQL---SKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN 75 (149)
Q Consensus 1 ~L~L~~~~~~~l-P~si~~L---~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~ 75 (149)
+|+|++|.+..+ |..+..+ ++|++|+|++|. +..+|.. +.+|+.|++.++. ++.+|... .+..++.|++.
T Consensus 228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~-l~~~~~~~---~l~~L~~L~L~ 302 (310)
T 4glp_A 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNR-LNRAPQPD---ELPEVDNLTLD 302 (310)
T ss_dssp SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCC-CCSCCCTT---SCCCCSCEECS
T ss_pred EEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCc-CCCCchhh---hCCCccEEECc
Confidence 589999999876 8888887 699999999998 8899874 5799999998875 66655422 23345566664
Q ss_pred C
Q 043750 76 G 76 (149)
Q Consensus 76 n 76 (149)
+
T Consensus 303 ~ 303 (310)
T 4glp_A 303 G 303 (310)
T ss_dssp S
T ss_pred C
Confidence 4
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=95.63 E-value=0.0028 Score=50.39 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=6.4
Q ss_pred hcCCCCCCEEccccc
Q 043750 16 IIQLSKLSCLYLSYC 30 (149)
Q Consensus 16 i~~L~~L~~L~L~~c 30 (149)
+..+++|+.|+|++|
T Consensus 183 l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQN 197 (386)
T ss_dssp HHHCTTCCEEECCSS
T ss_pred HHhCCCcCEEECcCC
Confidence 334444444444444
No 133
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.56 E-value=0.0074 Score=46.82 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=28.4
Q ss_pred EccCCCccccchhh----cCCCCCCEEccccccccccCCCCC------CCccEEccccc
Q 043750 3 YLSKNNFERIPKSI----IQLSKLSCLYLSYCGKLQSLPKLP------CSLHKLHAHHC 51 (149)
Q Consensus 3 ~L~~~~~~~lP~si----~~L~~L~~L~L~~c~~L~~lP~l~------~~L~~L~~~~C 51 (149)
+++.|....++..+ .++++|+.|+|++++ +..++.++ ++|+.|++.+.
T Consensus 149 ~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 149 DVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC
Confidence 44555444444322 456777777777776 66655432 56777777654
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.89 E-value=0.02 Score=44.48 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=23.8
Q ss_pred EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC
Q 043750 2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL 39 (149)
Q Consensus 2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l 39 (149)
|+|++|++..||+. +.++++|+.|.|.+. ++.|++-
T Consensus 231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~ 267 (329)
T 3sb4_A 231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQR 267 (329)
T ss_dssp EECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTT
T ss_pred EECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHH
Confidence 56777777777763 677777777777653 5555543
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=94.85 E-value=0.0082 Score=47.63 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=27.8
Q ss_pred EEccCCCcc------ccchhhcCCCCCCEEcccccccc-----ccCCCCC---CCccEEcccccc
Q 043750 2 LYLSKNNFE------RIPKSIIQLSKLSCLYLSYCGKL-----QSLPKLP---CSLHKLHAHHCT 52 (149)
Q Consensus 2 L~L~~~~~~------~lP~si~~L~~L~~L~L~~c~~L-----~~lP~l~---~~L~~L~~~~C~ 52 (149)
|+|++|.+. -+|..+..+++|+.|+|++|. + ..+|... ++|+.|++.+|.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 566666655 233356666666666666665 4 3344321 456666666654
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=94.37 E-value=0.028 Score=45.11 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=29.9
Q ss_pred EEccCCCcc-----ccchhhcCCCCCCEEcccccccccc---------CCCCCCCccEEcccccc
Q 043750 2 LYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCGKLQS---------LPKLPCSLHKLHAHHCT 52 (149)
Q Consensus 2 L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~~L~~---------lP~l~~~L~~L~~~~C~ 52 (149)
|+|++|++. .+|..+..+++|++|+|++|. +.. ++....+|+.|++.+|.
T Consensus 33 L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 33 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC 96 (461)
T ss_dssp EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC
T ss_pred EEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC
Confidence 567777665 456667777777777777765 332 11111257777777664
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.96 E-value=0.017 Score=47.85 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=23.3
Q ss_pred EEccCCCcc-ccchhhc-CCCCCCEEcccccccccc--CCCC---CCCccEEcccccc
Q 043750 2 LYLSKNNFE-RIPKSII-QLSKLSCLYLSYCGKLQS--LPKL---PCSLHKLHAHHCT 52 (149)
Q Consensus 2 L~L~~~~~~-~lP~si~-~L~~L~~L~L~~c~~L~~--lP~l---~~~L~~L~~~~C~ 52 (149)
|+|++|.+. ..+..+. .+++|+.|+|++|..+.. ++.+ .++|+.|++.+|.
T Consensus 110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 455555443 2223333 455566666655543333 2222 1345555555443
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.49 E-value=0.026 Score=46.76 Aligned_cols=75 Identities=25% Similarity=0.220 Sum_probs=45.1
Q ss_pred EEccCC-Cccc--cchhhcCCCCCCEEcccccc----c---cccCCCCCCCccEEcccccc------ccccccCCCCCCC
Q 043750 2 LYLSKN-NFER--IPKSIIQLSKLSCLYLSYCG----K---LQSLPKLPCSLHKLHAHHCT------ALESLSGLFPKSY 65 (149)
Q Consensus 2 L~L~~~-~~~~--lP~si~~L~~L~~L~L~~c~----~---L~~lP~l~~~L~~L~~~~C~------sL~~~~~~~~~~~ 65 (149)
|+|++| .+.. ++..+..+++|++|+|++|. . +..++...++|+.|++.+|. .+..+.. .
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~-----~ 209 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT-----R 209 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH-----H
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH-----h
Confidence 677777 4543 66656678888888888876 1 22233333578888888775 1111110 1
Q ss_pred CCCCCeeEecCCCCCc
Q 043750 66 ESCPPRFELNGNYNLD 81 (149)
Q Consensus 66 ~~~~~~l~~~nC~~L~ 81 (149)
...++.|++.+|..+.
T Consensus 210 ~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLE 225 (594)
T ss_dssp CTTCCEEECCTTSCHH
T ss_pred CCCCcEEecCCCCcHH
Confidence 2346678888885543
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=93.26 E-value=0.061 Score=42.28 Aligned_cols=11 Identities=18% Similarity=0.141 Sum_probs=4.9
Q ss_pred CCCEEcccccc
Q 043750 21 KLSCLYLSYCG 31 (149)
Q Consensus 21 ~L~~L~L~~c~ 31 (149)
+|+.|+|++|.
T Consensus 168 ~L~~L~Ls~n~ 178 (362)
T 3goz_A 168 NVNSLNLRGNN 178 (362)
T ss_dssp TCCEEECTTSC
T ss_pred cccEeeecCCC
Confidence 44444444443
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=93.05 E-value=0.052 Score=43.56 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=31.0
Q ss_pred CEEccCCCcc-----ccchhhcCCCCCCEEccccccccccC---------CCCCCCccEEccccc
Q 043750 1 YLYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCGKLQSL---------PKLPCSLHKLHAHHC 51 (149)
Q Consensus 1 ~L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~~L~~l---------P~l~~~L~~L~~~~C 51 (149)
+|+|++|.+. .+|..+..+++|++|+|++|. +... ..-..+|+.|++.+|
T Consensus 89 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 89 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred EEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 3677777766 467777777788888887776 4321 111135666666665
No 141
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=92.81 E-value=0.074 Score=41.79 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=4.9
Q ss_pred CCCCEEcccccc
Q 043750 20 SKLSCLYLSYCG 31 (149)
Q Consensus 20 ~~L~~L~L~~c~ 31 (149)
++|+.|+|++|.
T Consensus 109 ~~L~~L~Ls~N~ 120 (362)
T 3goz_A 109 FTITVLDLGWND 120 (362)
T ss_dssp TTCCEEECCSSC
T ss_pred CCccEEECcCCc
Confidence 344444444433
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.71 E-value=0.072 Score=41.17 Aligned_cols=50 Identities=28% Similarity=0.233 Sum_probs=35.3
Q ss_pred CEEccCCCccccc---hhhcCCCCCCEEccccccccccCCCCC--C--CccEEccccc
Q 043750 1 YLYLSKNNFERIP---KSIIQLSKLSCLYLSYCGKLQSLPKLP--C--SLHKLHAHHC 51 (149)
Q Consensus 1 ~L~L~~~~~~~lP---~si~~L~~L~~L~L~~c~~L~~lP~l~--~--~L~~L~~~~C 51 (149)
+|+|++|+|..++ ..+..+++|+.|+|+++. +..+.++- . +|+.|++.+.
T Consensus 174 ~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp EEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTS
T ss_pred EEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCC
Confidence 4899999987654 667899999999999887 66653321 1 4455555443
No 143
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.38 E-value=0.077 Score=36.30 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=33.5
Q ss_pred EEccCCCcc--ccchhhcCCCCCCEEccccccccccCCCCC----CCccEEcccc
Q 043750 2 LYLSKNNFE--RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHH 50 (149)
Q Consensus 2 L~L~~~~~~--~lP~si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~ 50 (149)
++.+++++. ++|..|- .+|+.|+|+++. |..||.-. .+|+.|++.+
T Consensus 13 v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp EECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCS
T ss_pred EEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecC
Confidence 567778887 8886432 368899999888 88888643 5677777764
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.83 E-value=0.19 Score=34.23 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=11.7
Q ss_pred EEccCCCccccchh-hcCCCCCCEEccc
Q 043750 2 LYLSKNNFERIPKS-IIQLSKLSCLYLS 28 (149)
Q Consensus 2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~ 28 (149)
|+|++|+|..||.. +..+.+|+.|+|+
T Consensus 36 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 36 LVLTGNNLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp EECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred EECCCCcCCccChhhhhhccccCEEEec
Confidence 44444444444432 2344444444444
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=91.36 E-value=0.071 Score=38.82 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=37.1
Q ss_pred CEEccCCC-ccc-cchhhcCC----CCCCEEcccccccccc-----CCCCCCCccEEcccccccccc
Q 043750 1 YLYLSKNN-FER-IPKSIIQL----SKLSCLYLSYCGKLQS-----LPKLPCSLHKLHAHHCTALES 56 (149)
Q Consensus 1 ~L~L~~~~-~~~-lP~si~~L----~~L~~L~L~~c~~L~~-----lP~l~~~L~~L~~~~C~sL~~ 56 (149)
+|+|++|. +.. ==..|..+ ++|++|+|++|.++.. |-. .++|+.|++.+|..+..
T Consensus 89 ~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 89 KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp EEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CTTCCEEEEESCTTCCC
T ss_pred EEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CCCCCEEECCCCCCCCc
Confidence 37788874 432 00124443 3699999999997654 333 37899999999987764
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=89.95 E-value=0.11 Score=41.58 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=8.2
Q ss_pred hhhcCCCCCCEEcccccc
Q 043750 14 KSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 14 ~si~~L~~L~~L~L~~c~ 31 (149)
..+..++.|++|+|++|.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHHTCSSCCEEECTTSS
T ss_pred HHHhcCCCcCEEeCCCCC
Confidence 333444444444444443
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=89.93 E-value=0.062 Score=44.51 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=30.8
Q ss_pred CCCCCCEEcccccccccc--CCCC---CCCccEEcccccccccc--ccCCCCCCCCCCCCeeEecCCC
Q 043750 18 QLSKLSCLYLSYCGKLQS--LPKL---PCSLHKLHAHHCTALES--LSGLFPKSYESCPPRFELNGNY 78 (149)
Q Consensus 18 ~L~~L~~L~L~~c~~L~~--lP~l---~~~L~~L~~~~C~sL~~--~~~~~~~~~~~~~~~l~~~nC~ 78 (149)
.+++|++|+|++|. +.. ++.+ .++|++|++.+|. +.. ++... .....++.|++++|.
T Consensus 461 ~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~--~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAV--TKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHH--HHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHH--HhcCccCeeECcCCc
Confidence 36777777777775 432 2222 2567777777776 321 11100 012235677777776
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=89.21 E-value=0.39 Score=39.61 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=17.2
Q ss_pred EEccCCCcc-----ccchhhcCCCCCCEEcccccc
Q 043750 2 LYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCG 31 (149)
Q Consensus 2 L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~ 31 (149)
|+|++|.+. .++..+.++++|+.|+|++|.
T Consensus 197 L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred EEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 556666553 344445566666666666654
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=87.31 E-value=0.58 Score=36.04 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=24.1
Q ss_pred EEccCCCccccch-hhcCCCCCC-EEccccccccccCCCC
Q 043750 2 LYLSKNNFERIPK-SIIQLSKLS-CLYLSYCGKLQSLPKL 39 (149)
Q Consensus 2 L~L~~~~~~~lP~-si~~L~~L~-~L~L~~c~~L~~lP~l 39 (149)
|+|.+| ++.|++ .+.++.+|+ .|.+.+ +++.|++-
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchh
Confidence 566665 777766 477888888 888876 46666643
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=85.84 E-value=0.21 Score=39.86 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=38.3
Q ss_pred CEEccCCCcc-----ccchhhcCCCCCCEEccccccccccC-----CCC---CCCccEEcccccc
Q 043750 1 YLYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCGKLQSL-----PKL---PCSLHKLHAHHCT 52 (149)
Q Consensus 1 ~L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~~L~~l-----P~l---~~~L~~L~~~~C~ 52 (149)
+|+|++|.+. .++..+...+.|+.|+|++|. +... ... .++|+.|++.+|.
T Consensus 187 ~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp EEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred EEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 4899999876 356778889999999999997 5532 221 1579999998874
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.03 E-value=2 Score=33.54 Aligned_cols=50 Identities=28% Similarity=0.467 Sum_probs=27.4
Q ss_pred ccccch-hhcCCCCCCEEccc-------------cccccccCCCCCCCccEEc---cccccccccccC
Q 043750 9 FERIPK-SIIQLSKLSCLYLS-------------YCGKLQSLPKLPCSLHKLH---AHHCTALESLSG 59 (149)
Q Consensus 9 ~~~lP~-si~~L~~L~~L~L~-------------~c~~L~~lP~l~~~L~~L~---~~~C~sL~~~~~ 59 (149)
+..++. .+.++++|+.+.+. +|.+|+++ .+|.+++.+. ..+|++|+.+.-
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i-~lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV-TLPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE-ECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred ceeccccccccccccccccccccccceehhhhhcCCCCCCEE-EcCccccEEHHHHhhCCCCCCEEEE
Confidence 334443 34566777776664 34444443 2344555553 347888887644
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=79.76 E-value=0.76 Score=36.36 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=27.2
Q ss_pred cccccccCCCCCCCccEEc---cccccccccccCCCCCCCCCCCCeeEecCCCCCchh
Q 043750 29 YCGKLQSLPKLPCSLHKLH---AHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRN 83 (149)
Q Consensus 29 ~c~~L~~lP~l~~~L~~L~---~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~~L~~~ 83 (149)
+|.+|+.+ .+|.+++.+. ..+|++|+.+.-+..... ...--|.+|.+|...
T Consensus 318 ~c~~L~~i-~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~---I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 318 SCTSLVSI-DLPYLVEEIGKRSFRGCTSLSNINFPLSLRK---IGANAFQGCINLKKV 371 (394)
T ss_dssp TCTTCCEE-CCCTTCCEECTTTTTTCTTCCEECCCTTCCE---ECTTTBTTCTTCCEE
T ss_pred CCCCCCEE-EeCCcccEEhHHhccCCCCCCEEEECccccE---ehHHHhhCCCCCCEE
Confidence 56666654 3444555553 457888886643222111 112247788888653
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=77.34 E-value=0.79 Score=32.61 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=34.0
Q ss_pred CEEccCCCcc-----ccchhhcCCCCCCEEcccccccccc-----CCCC---CCCccEEcc
Q 043750 1 YLYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCGKLQS-----LPKL---PCSLHKLHA 48 (149)
Q Consensus 1 ~L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~~L~~-----lP~l---~~~L~~L~~ 48 (149)
+|+|++|.+. .+...+...+.|++|+|++|. +.. |.+. -.+|+.|++
T Consensus 69 ~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 69 KFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred EEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEe
Confidence 4889999875 356677788899999999887 543 1111 146899998
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=74.95 E-value=0.97 Score=32.11 Aligned_cols=51 Identities=10% Similarity=0.073 Sum_probs=36.9
Q ss_pred CEEccCC-Ccc-----ccchhhcCCCCCCEEcccccccccc-----CCCC---CCCccEEcccccc
Q 043750 1 YLYLSKN-NFE-----RIPKSIIQLSKLSCLYLSYCGKLQS-----LPKL---PCSLHKLHAHHCT 52 (149)
Q Consensus 1 ~L~L~~~-~~~-----~lP~si~~L~~L~~L~L~~c~~L~~-----lP~l---~~~L~~L~~~~C~ 52 (149)
+|+|++| .+. .+-..+...+.|++|+|++|. +.. +.+. -.+|+.|++.+|.
T Consensus 40 ~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 40 EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp EEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4789988 664 466678888999999999987 542 1111 1579999998764
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=66.36 E-value=6.6 Score=31.39 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=16.2
Q ss_pred ccccch-hhcCCCCCCEEccccccccccCCC
Q 043750 9 FERIPK-SIIQLSKLSCLYLSYCGKLQSLPK 38 (149)
Q Consensus 9 ~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~ 38 (149)
+..|+. .+.++.+|+.++|.+++ +..||.
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~ 197 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSKTK-ITKLPA 197 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTTSC-CSEECT
T ss_pred ccEehHHHhhCcccCCeeecCCCc-ceEech
Confidence 344432 35566677777776544 555554
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=65.14 E-value=7.2 Score=30.58 Aligned_cols=8 Identities=38% Similarity=0.866 Sum_probs=4.0
Q ss_pred cccccccc
Q 043750 50 HCTALESL 57 (149)
Q Consensus 50 ~C~sL~~~ 57 (149)
+|.+|+.+
T Consensus 309 ~c~~L~~i 316 (394)
T 4gt6_A 309 GCISLKSI 316 (394)
T ss_dssp TCTTCCEE
T ss_pred CCCCcCEE
Confidence 45555543
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=55.49 E-value=3.3 Score=32.92 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=33.7
Q ss_pred CEEccCCCccc-cchhhc---CCCCCCEEcccccccccc-----CCCC---CCCccEEcccccc
Q 043750 1 YLYLSKNNFER-IPKSII---QLSKLSCLYLSYCGKLQS-----LPKL---PCSLHKLHAHHCT 52 (149)
Q Consensus 1 ~L~L~~~~~~~-lP~si~---~L~~L~~L~L~~c~~L~~-----lP~l---~~~L~~L~~~~C~ 52 (149)
+|+|.+|.+.. .+..+. .+++|+.|+|+++. +.. +++- .++|+.|++.+|.
T Consensus 256 ~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred EEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 36787777642 233333 57899999998776 654 3332 2678899888774
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=49.48 E-value=13 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=19.8
Q ss_pred cchhhcCCCCCCEEccccccccccCCCC-CCCccEEccc
Q 043750 12 IPKSIIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAH 49 (149)
Q Consensus 12 lP~si~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~ 49 (149)
+...+..+++|+.|.|++|..+ .+|.+ .++|+.|++.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~ 201 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEII 201 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSCBCTTCSEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eeccccCCCCcEEEEe
Confidence 4445566677777777666333 23322 2455555544
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=44.69 E-value=13 Score=29.01 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=37.1
Q ss_pred hcCCCCCCEEccc------------cccccccCCCCCCCccEEc---cccccccccccCCCCCCCCCCCCeeEecCCCCC
Q 043750 16 IIQLSKLSCLYLS------------YCGKLQSLPKLPCSLHKLH---AHHCTALESLSGLFPKSYESCPPRFELNGNYNL 80 (149)
Q Consensus 16 i~~L~~L~~L~L~------------~c~~L~~lP~l~~~L~~L~---~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~~L 80 (149)
+.++..|+.+.+. +|.+|+.+ .+|.+++.+. ..+|++|+.+.-+.... ....--|.+|.+|
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i-~lp~~v~~I~~~aF~~C~~L~~i~ip~sv~---~I~~~aF~~C~~L 359 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPESVFAGCISLKSI-DIPEGITQILDDAFAGCEQLERIAIPSSVT---KIPESAFSNCTAL 359 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEE-ECCTTCCEECTTTTTTCTTCCEEEECTTCC---BCCGGGGTTCTTC
T ss_pred cccccccccccCCCcccccCceeecCCCCcCEE-EeCCcccEehHhHhhCCCCCCEEEECcccC---EEhHhHhhCCCCC
Confidence 3455666666653 46666654 3444555553 45899998754322211 1223458899999
Q ss_pred chhh
Q 043750 81 DRNV 84 (149)
Q Consensus 81 ~~~~ 84 (149)
....
T Consensus 360 ~~i~ 363 (394)
T 4gt6_A 360 NNIE 363 (394)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7543
No 160
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.82 E-value=13 Score=23.85 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=15.9
Q ss_pred cccccccccCCCCCCCccEE---cccccccccccc
Q 043750 27 LSYCGKLQSLPKLPCSLHKL---HAHHCTALESLS 58 (149)
Q Consensus 27 L~~c~~L~~lP~l~~~L~~L---~~~~C~sL~~~~ 58 (149)
..+|..|+++ .+|.+++.+ -..+|++|+.+-
T Consensus 16 F~~c~~L~~i-~iP~~v~~Ig~~aF~~C~~L~~i~ 49 (100)
T 2lz0_A 16 FAGNTVIREI-TVQPNIGLLYDGMFSGCTALEKLI 49 (100)
T ss_dssp TTTCTTCCCE-EECTTSSCCCTTSSTTCTTCCCEE
T ss_pred hcCCCCCcEE-EcCCchheEcHHHHhccCCccEEE
Confidence 3455555544 333344433 345777776554
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=33.60 E-value=37 Score=26.95 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=15.8
Q ss_pred EEccCCCccccchhhcCCCCCCEEccc
Q 043750 2 LYLSKNNFERIPKSIIQLSKLSCLYLS 28 (149)
Q Consensus 2 L~L~~~~~~~lP~si~~L~~L~~L~L~ 28 (149)
++|++|++..+|...-...+|+.+.|.
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred eecCCCcceEechhhEeecccCEEEeC
Confidence 566666676666643334566665553
No 162
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=22.79 E-value=38 Score=23.45 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.4
Q ss_pred CCcceEEEccCCCCCCcc
Q 043750 116 PEFEGFAILPGNEIPKWF 133 (149)
Q Consensus 116 ~~f~~~~~lPGs~IP~WF 133 (149)
+.|.+.+|=||...|.|+
T Consensus 71 ~~f~l~vCSpG~~sP~W~ 88 (144)
T 3nct_A 71 ERFHLALCSPGDVSQVWV 88 (144)
T ss_dssp CSEEEEEECSSSSCSSEE
T ss_pred CceEEEEeCCCCCCcceE
Confidence 566678999999999995
Done!