Query 043751
Match_columns 275
No_of_seqs 228 out of 1183
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 13:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 5E-23 1.7E-27 151.8 5.4 60 36-95 2-62 (63)
2 1u3e_M HNH homing endonuclease 96.8 1E-05 3.4E-10 68.7 -7.7 61 13-76 85-145 (174)
3 3igm_B PF14_0633 protein; AP2 87.9 0.34 1.2E-05 36.8 3.0 27 32-58 3-30 (77)
4 3jtz_A Integrase; four strande 74.1 3.1 0.00011 31.5 3.8 44 40-83 28-75 (88)
5 1z1b_A Integrase; protein-DNA 72.2 2.9 9.8E-05 36.7 3.7 41 39-83 15-55 (356)
6 3ju0_A Phage integrase; four s 68.1 8.7 0.0003 30.2 5.3 44 40-83 28-75 (108)
7 1x60_A Sporulation-specific N- 55.6 7.9 0.00027 27.6 2.8 31 51-81 38-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 53.9 14 0.00049 26.6 4.0 32 50-81 37-68 (81)
9 1b69_A Protein (integrase); in 37.1 29 0.00099 25.6 3.3 31 33-63 8-39 (69)
10 1kcq_A Gelsolin, brevin, ADF, 28.6 81 0.0028 23.7 4.8 37 46-82 27-63 (104)
11 1svq_A Severin; actin-binding; 23.2 74 0.0025 24.5 3.7 34 48-81 39-72 (114)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.87 E-value=5e-23 Score=151.84 Aligned_cols=60 Identities=58% Similarity=0.901 Sum_probs=56.4
Q ss_pred ceEEEEECCCCcEEEEEecCCC-CcEEEecCCCCHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 043751 36 KFVGVRQRPSGRWVAEIKDTTK-KIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTN 95 (275)
Q Consensus 36 gyrGV~~r~~GKW~A~I~~~gk-~kri~LGtFdT~EEAA~AYD~AA~~l~G~~A~~NFp~~ 95 (275)
+||||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999987889999999999875 57899999999999999999999999999999999986
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=96.85 E-value=1e-05 Score=68.69 Aligned_cols=61 Identities=5% Similarity=-0.105 Sum_probs=46.6
Q ss_pred HHhhhhccccccCCCCCCCCCCCceEEEEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHH
Q 043751 13 KACINQVNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAY 76 (275)
Q Consensus 13 ~~NLR~~t~~~n~~Nr~r~~ntSgyrGV~~r~~GKW~A~I~~~gk~kri~LGtFdT~EEAA~AY 76 (275)
.+|||++|+.+|.+++.+.......+||.....++|.+.|.+. +. ++||.|+|.+|||++|
T Consensus 85 ~~NL~~~t~~eN~~~~~~~~~~~~~~g~~~~~~~k~~~vi~~~-~~--~~~~~f~s~~eAa~~~ 145 (174)
T 1u3e_M 85 STNLRWVTQKINVENQMSRGTLNVSKAQQIAKIKNQKPIIVIS-PD--GIEKEYPSTKCACEEL 145 (174)
T ss_dssp GGGEEEECHHHHHHHHHHHTCCCCHHHHHHHHHHTCCCEEEEC-TT--SCEEEESCHHHHHHHH
T ss_pred HHHcEECCHHHHhhcccccCcccceeeeeeccCCCCceEEEEc-CC--ceEEeeCCHHHHHHHH
Confidence 4799999999999887544322235677334457799999987 54 6799999999999996
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=87.95 E-value=0.34 Score=36.81 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=22.5
Q ss_pred CCCCceEEE-EECCCCcEEEEEecCCCC
Q 043751 32 KSNSKFVGV-RQRPSGRWVAEIKDTTKK 58 (275)
Q Consensus 32 ~ntSgyrGV-~~r~~GKW~A~I~~~gk~ 58 (275)
+..|||+|| |+++.+.|.|.-..+++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~r 30 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASR 30 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeE
Confidence 457999999 788889999999987653
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=74.07 E-value=3.1 Score=31.54 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=34.2
Q ss_pred EEECCC--CcEEEEEecCCCCcEEEecCCC--CHHHHHHHHHHHHHhc
Q 043751 40 VRQRPS--GRWVAEIKDTTKKIRVWLGTFE--TAEEAARAYDEAACLL 83 (275)
Q Consensus 40 V~~r~~--GKW~A~I~~~gk~kri~LGtFd--T~EEAA~AYD~AA~~l 83 (275)
++-.++ ..|+-+.+.+||.+++-||.|. |.++|....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 444444 4599999999999999999996 6888887777766655
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=72.17 E-value=2.9 Score=36.66 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=30.1
Q ss_pred EEEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhc
Q 043751 39 GVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLL 83 (275)
Q Consensus 39 GV~~r~~GKW~A~I~~~gk~kri~LGtFdT~EEAA~AYD~AA~~l 83 (275)
||+++++|+|+.+....||. +.+|. |..||..+..++...+
T Consensus 15 ~v~~~~~g~~~~r~~~~gk~--~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPRTGKE--FGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTTTCCE--EEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeecCCeE--EECCC--CHHHHHHHHHHHHHHH
Confidence 57777789999887766654 77896 8888877766655444
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=68.06 E-value=8.7 Score=30.15 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=33.2
Q ss_pred EEECCCC--cEEEEEecCCCCcEEEecCCC--CHHHHHHHHHHHHHhc
Q 043751 40 VRQRPSG--RWVAEIKDTTKKIRVWLGTFE--TAEEAARAYDEAACLL 83 (275)
Q Consensus 40 V~~r~~G--KW~A~I~~~gk~kri~LGtFd--T~EEAA~AYD~AA~~l 83 (275)
++-.++| .|+-+.+.+||.+++-||.|. |..+|....+++...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4444444 599999999999999999996 5788877776666555
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=55.57 E-value=7.9 Score=27.62 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=22.2
Q ss_pred EEecCCCCcEEEecCCCCHHHHHHHHHHHHH
Q 043751 51 EIKDTTKKIRVWLGTFETAEEAARAYDEAAC 81 (275)
Q Consensus 51 ~I~~~gk~kri~LGtFdT~EEAA~AYD~AA~ 81 (275)
.|...+...|+++|.|.+.++|..+-++...
T Consensus 38 ~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 38 IVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3333334467999999999999888776554
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=53.91 E-value=14 Score=26.59 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=23.5
Q ss_pred EEEecCCCCcEEEecCCCCHHHHHHHHHHHHH
Q 043751 50 AEIKDTTKKIRVWLGTFETAEEAARAYDEAAC 81 (275)
Q Consensus 50 A~I~~~gk~kri~LGtFdT~EEAA~AYD~AA~ 81 (275)
+.|...+...||.+|.|.+.++|..+-++...
T Consensus 37 a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 37 SKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred eEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 44444445577999999999999888776654
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=37.14 E-value=29 Score=25.59 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=23.7
Q ss_pred CCCceEEEEECCCCcEEEEEecC-CCCcEEEe
Q 043751 33 SNSKFVGVRQRPSGRWVAEIKDT-TKKIRVWL 63 (275)
Q Consensus 33 ntSgyrGV~~r~~GKW~A~I~~~-gk~kri~L 63 (275)
+.--+.|+.++..|+|+.++.+. |+.+.+|-
T Consensus 8 gr~L~~GesqR~dG~Y~yry~d~~Gkr~~vYs 39 (69)
T 1b69_A 8 GRILKTGESQRKDGRYLYKYIDSFGEPQFVYS 39 (69)
T ss_dssp SSCCCTTEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CCccCCCeEEccCCcEEEEEEcCCCCEEEEEe
Confidence 44567789889999999999887 66655554
No 10
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=28.56 E-value=81 Score=23.69 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=30.8
Q ss_pred CcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHh
Q 043751 46 GRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACL 82 (275)
Q Consensus 46 GKW~A~I~~~gk~kri~LGtFdT~EEAA~AYD~AA~~ 82 (275)
..--+.|.+.+....+|.|...+..|...|-+.|...
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3446788888888999999999999999998877543
No 11
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=23.20 E-value=74 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=28.8
Q ss_pred EEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHH
Q 043751 48 WVAEIKDTTKKIRVWLGTFETAEEAARAYDEAAC 81 (275)
Q Consensus 48 W~A~I~~~gk~kri~LGtFdT~EEAA~AYD~AA~ 81 (275)
=-+.|.+.++...+|.|...+..|-++|-..|..
T Consensus 39 ~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~ 72 (114)
T 1svq_A 39 GDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARA 72 (114)
T ss_dssp TSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3577888888899999999999999999877764
Done!