BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043754
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 333 bits (854), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 159/316 (50%), Positives = 215/316 (68%), Gaps = 1/316 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
+DFN+LQ H++EL +I RWWK+ D KLP+ RDRVVEGYFWI GVYFEP++ L RK+L
Sbjct: 237 IDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKML 296
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
TKVI+MASI+DD YD+Y T EEL + AIERWD+ ID +PEY+K Y ALLD Y E
Sbjct: 297 TKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMV 356
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
+ +A G Y + +AK +M L +SY++EA+W Q Y P+ EE+ AL +CGY +L+ +
Sbjct: 357 QLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAIT 416
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
SF+GM DIVT E F+W + +PKI+QAS+IICR MDD+ HKF+ +R SA+ECYM+++
Sbjct: 417 SFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY 476
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNNDSYTN- 300
GV+ +EA VF + V +AWKD+N NLAR+MDVLY+ D YT
Sbjct: 477 GVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYV 536
Query: 301 PHLMKDHVAALLKDPV 316
K + +LL +P+
Sbjct: 537 GKAAKGGITSLLIEPI 552
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 146/317 (46%), Positives = 214/317 (67%), Gaps = 3/317 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN+LQ H++EL + RWWK+ D LP+ RDRVVE YFW LGVYFEP++ AR +L
Sbjct: 233 LDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVML 292
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
K ISM SI+DD +DAYGT++ELE + AI+RWD++ ID LP+Y+K+ Y A+LD Y ++E
Sbjct: 293 VKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYE 352
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
K+L+S G + + A E MK +VR+Y +E+ W + Y P + EY+ AL + Y LL+T+
Sbjct: 353 KELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATT 412
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
S+LGM+ T++ FEW+S NPKI++AS IICR++DD +++ E+ RG +A+ +EC M+ +
Sbjct: 413 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY 471
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNN-DSYTN 300
G+S +EA+ F+ AWKDIN NLAR+++V Y +N D YT+
Sbjct: 472 GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTH 531
Query: 301 PH-LMKDHVAALLKDPV 316
P ++K H+ LL D +
Sbjct: 532 PEKVLKPHIINLLVDSI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/317 (45%), Positives = 213/317 (67%), Gaps = 3/317 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN+LQ H++EL + RWWK+ D LP+ RDRVVE YFW LGVYFEP++ AR +L
Sbjct: 231 LDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVML 290
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
K ISM SI+DD +DAYGT++ELE + AI+RWD++ ID LP+Y+K+ Y A+LD Y ++E
Sbjct: 291 VKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYE 350
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
K+L+S G + + A E MK +VR+Y +E+ W + Y P + EY+ AL + Y L+T+
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
S+LGM+ T++ FEW+S NPKI++AS IICR++DD +++ E+ RG +A+ +EC M+ +
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY 469
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNN-DSYTN 300
G+S +EA+ F+ AWKDIN NLAR+++V Y +N D YT+
Sbjct: 470 GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 301 P-HLMKDHVAALLKDPV 316
P ++K H+ LL D +
Sbjct: 530 PEEVLKPHIINLLVDSI 546
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/317 (45%), Positives = 213/317 (67%), Gaps = 3/317 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN+LQ H++EL + RWWK+ D LP+ RDRVVE YFW LGVYFEP++ AR +L
Sbjct: 233 LDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVML 292
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
K ISM SI+DD +DAYGT++ELE + AI+RWD++ ID LP+Y+K+ Y A+LD Y ++E
Sbjct: 293 VKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYE 352
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
K+L+S G + + A E MK +VR+Y +E+ W + Y P + EY+ AL + Y L+T+
Sbjct: 353 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 412
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
S+LGM+ T++ FEW+S NPKI++AS IICR++DD +++ E+ RG +A+ +EC M+ +
Sbjct: 413 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY 471
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNN-DSYTN 300
G+S +EA+ F+ AWKDIN NLAR+++V Y +N D YT+
Sbjct: 472 GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 531
Query: 301 PH-LMKDHVAALLKDPV 316
P ++K H+ LL D +
Sbjct: 532 PEKVLKPHIINLLVDSI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/317 (45%), Positives = 213/317 (67%), Gaps = 3/317 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN+LQ H++EL + RWWK+ D LP+ RDRVVE YFW LGVYFEP++ AR +L
Sbjct: 231 LDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVML 290
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
K ISM SI+DD +DAYGT++ELE + AI+RWD++ ID LP+Y+K+ Y A+LD Y ++E
Sbjct: 291 VKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYE 350
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
K+L+S G + + A E MK +VR+Y +E+ W + Y P + EY+ AL + Y L+T+
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
S+LGM+ T++ FEW+S NPKI++AS IICR++DD +++ E+ RG +A+ +EC M+ +
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY 469
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNN-DSYTN 300
G+S +EA+ F+ AWKDIN NLAR+++V Y +N D YT+
Sbjct: 470 GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 301 PH-LMKDHVAALLKDPV 316
P ++K H+ LL D +
Sbjct: 530 PEKVLKPHIINLLVDSI 546
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/317 (45%), Positives = 213/317 (67%), Gaps = 3/317 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN+LQ H++EL + RWWK+ D LP+ RDRVVE YFW LGVYFEP++ AR +L
Sbjct: 231 LDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVML 290
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
K ISM SI+DD +DAYGT++ELE + AI+RWD++ ID LP+Y+K+ Y A+LD Y ++E
Sbjct: 291 VKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYE 350
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
K+L+S G + + A E MK +VR+Y +E+ W + Y P + EY+ AL + Y L+T+
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
S+LGM+ T++ FEW+S NPKI++AS IICR++DD +++ E+ RG +A+ +EC M+ +
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY 469
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNN-DSYTN 300
G+S +EA+ F+ AWKDIN NLAR+++V Y +N D YT+
Sbjct: 470 GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 301 PH-LMKDHVAALLKDPV 316
P ++K H+ LL D +
Sbjct: 530 PEKVLKPHIINLLVDSI 546
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 286 bits (731), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/317 (45%), Positives = 213/317 (67%), Gaps = 3/317 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN+LQ H++EL + RWWK+ D LP+ RDRVVE YFW LGVYFEP++ AR +L
Sbjct: 218 LDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVML 277
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
K ISM SI+DD +DAYGT++ELE + AI+RWD++ ID LP+Y+K+ Y A+LD Y ++E
Sbjct: 278 VKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYE 337
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
K+L+S G + + A E MK +VR+Y +E+ W + Y P + EY+ AL + Y L+T+
Sbjct: 338 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 397
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
S+LGM+ T++ FEW+S NPKI++AS IICR++DD +++ E+ RG +A+ +EC M+ +
Sbjct: 398 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY 456
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNN-DSYTN 300
G+S +EA+ F+ AWKDIN NLAR+++V Y +N D YT+
Sbjct: 457 GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 516
Query: 301 PH-LMKDHVAALLKDPV 316
P ++K H+ LL D +
Sbjct: 517 PEKVLKPHIINLLVDSI 533
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 281 bits (719), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/317 (45%), Positives = 212/317 (66%), Gaps = 3/317 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN+LQ H++EL + RWWK+ D LP+ RDRVVE YFW LGVYFEP++ AR +L
Sbjct: 231 LDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVML 290
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
K ISM SI+DD +DAYGT++ELE + AI+RWD++ ID LP+Y+K+ Y A+LD Y ++E
Sbjct: 291 VKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYE 350
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
K+L+S G + + A E MK +VR+Y +E+ W + Y P + EY+ AL + Y L+T+
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
S+LGM+ T++ FEW+S NPKI++AS II R++DD +++ E+ RG +A+ +EC M+ +
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDY 469
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNN-DSYTN 300
G+S +EA+ F+ AWKDIN NLAR+++V Y +N D YT+
Sbjct: 470 GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 301 P-HLMKDHVAALLKDPV 316
P ++K H+ LL D +
Sbjct: 530 PEEVLKPHIINLLVDSI 546
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 281 bits (719), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/317 (45%), Positives = 212/317 (66%), Gaps = 3/317 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN+LQ H++EL + RWWK+ D LP+ RDRVVE YF LGVYFEP++ AR +L
Sbjct: 231 LDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVML 290
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
K ISM SI+DD +DAYGT++ELE + AI+RWD++ ID LP+Y+K+ Y A+LD Y ++E
Sbjct: 291 VKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYE 350
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
K+L+S G + + A E MK +VR+Y +E+ W + Y P + EY+ AL + Y L+T+
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
S+LGM+ T++ FEW+S NPKI++AS IICR++DD +++ E+ RG +A+ +EC M+ +
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY 469
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNN-DSYTN 300
G+S +EA+ F+ AWKDIN NLAR+++V Y +N D YT+
Sbjct: 470 GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 301 P-HLMKDHVAALLKDPV 316
P ++K H+ LL D +
Sbjct: 530 PEEVLKPHIINLLVDSI 546
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 276 bits (706), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/317 (45%), Positives = 211/317 (66%), Gaps = 3/317 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN+LQ H++EL + RWWK+ D LP+ RDRVVE YF LGVYFEP++ AR +L
Sbjct: 231 LDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVML 290
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
K ISM SI+DD +DAYGT++ELE + AI+RWD++ ID LP+Y+K+ Y A+LD Y ++E
Sbjct: 291 VKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYE 350
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
K+L+S G + + A E MK +VR+Y +E+ W + Y P + EY+ AL + Y L+T+
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
S+LGM+ T++ FEW+S NPKI++AS II R++DD +++ E+ RG +A+ +EC M+ +
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDY 469
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNN-DSYTN 300
G+S +EA+ F+ AWKDIN NLAR+++V Y +N D YT+
Sbjct: 470 GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 301 P-HLMKDHVAALLKDPV 316
P ++K H+ LL D +
Sbjct: 530 PEEVLKPHIINLLVDSI 546
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 211 bits (536), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 183/317 (57%), Gaps = 5/317 (1%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN++Q Q Q+EL++ RWW + + ++LPF+RDR+VE Y+W GV + R +L
Sbjct: 253 LDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIML 312
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
TK+ ++ + IDD++D YGT+EEL+LF TAI+RWD+ ++ LP Y+++CY AL + +E
Sbjct: 313 TKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMA 372
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
D P+ ++ L+ SY+IEA+W + + P++EEYM+ + +S G + + +
Sbjct: 373 YDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSH 432
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
F + D + +EA E + IV+AS I RL DD+ + E +RG V +V+CYM +
Sbjct: 433 LFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEK 492
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQN-NDSYTN 300
SEEEA + R + WK +N NLAR+ +YQ+ +D +
Sbjct: 493 NASEEEAREHVRSLIDQTWKMMN-KEMMTSSFSKYFVEVSANLARMAQWIYQHESDGFGM 551
Query: 301 PHLMKDHVAALLKDPVF 317
H + V +L+D +F
Sbjct: 552 QHSL---VNKMLRDLLF 565
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 175/316 (55%), Gaps = 2/316 (0%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
L+FNI+Q HQ+EL+D+ RWW P KLPF+RDR+VE +FW +G++ + RK+
Sbjct: 232 LNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMA 291
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
+I +A++IDDIYD YGT++ELELF +RWD +I LP Y++LCY + + S+
Sbjct: 292 ATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAA 351
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
D+ + + L + ++S+ LV +Y EA+W Y P+++EY+ +A +S + +
Sbjct: 352 YDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISP 411
Query: 182 SFLGMEDIVTKEA-FEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240
++ + A + + I+ + II RL DD+ + FE RG V ++CYMK+
Sbjct: 412 TYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKE 471
Query: 241 HGVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNNDSYTN 300
SEEEAV+ + + AWKD+N N+ R+ +Y + D +
Sbjct: 472 TNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGV 531
Query: 301 PHLMK-DHVAALLKDP 315
H +H+A LL +P
Sbjct: 532 QHSKTYEHIAGLLFEP 547
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 175/319 (54%), Gaps = 3/319 (0%)
Query: 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKI 60
+LD+N++Q +Q +LR+ RWW+ + KL F RDR++E ++W +GV FEP++ R
Sbjct: 234 ILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNS 293
Query: 61 LTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEF 120
+ K+ S +IIDDIYD YGT++ELELF A+ERWD++AI+ LP+Y+KLC+ AL + +E
Sbjct: 294 VAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEI 353
Query: 121 EKD-LASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLS 179
D L KG LP+ ++ L +++ EA+W + PT ++Y A S L
Sbjct: 354 AYDNLKDKGENI-LPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQL 412
Query: 180 TSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMK 239
++ + + KE E + I+ S I RL +D+ S E RG A++V CYM+
Sbjct: 413 IFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMR 472
Query: 240 QHGVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNNDSYT 299
G+SEE A + + WK +N NLAR Y N D++T
Sbjct: 473 TKGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHT 532
Query: 300 NP-HLMKDHVAALLKDPVF 317
+P L + V +++ +P+
Sbjct: 533 SPDELTRKRVLSVITEPIL 551
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 165/303 (54%), Gaps = 1/303 (0%)
Query: 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKI 60
+LD NI+Q Q QEEL++ RWW+N KLPF RDR+VE YFW G+ + AR +
Sbjct: 225 ILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIM 284
Query: 61 LTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEF 120
+ KV ++ ++IDDIYD YGT+EELE F I RWD+++ID LP+Y++LC+ AL + +
Sbjct: 285 MGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDT 344
Query: 121 EKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLST 180
D+ + + +P+ ++S L Y++EARW + P++EEY+ + S + T
Sbjct: 345 SYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLT 404
Query: 181 SSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240
F + D TKE + + +V+ SS + RL DD+ + E RG V +++CYM
Sbjct: 405 HIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSD 464
Query: 241 HGVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXX-XXNLARLMDVLYQNNDSYT 299
+ SE EA K + + WK +N +L R+ ++Y N D +
Sbjct: 465 YNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHG 524
Query: 300 NPH 302
H
Sbjct: 525 TQH 527
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 178/320 (55%), Gaps = 9/320 (2%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFN +Q HQ EL+D+ RWWK+ + L F R+RV E YF FEP+F R++
Sbjct: 469 LDFNKVQSIHQTELQDLRRWWKSSGFTD-LNFTRERVTEIYFSPASFIFEPEFSKCREVY 527
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
TK + I+DD+YDA+G++++L+LF +++RWDLS +D +P+ +K+C+ + +++
Sbjct: 528 TKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIA 587
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSC--GYLLLS 179
K+ + L + + K+ + +Y EA W + +YVP+ EY+ A +S G ++L
Sbjct: 588 KEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLI 647
Query: 180 TSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMK 239
++ F G +++T E + + +Q + RL++D +++ E+ +G VASA++CYMK
Sbjct: 648 SALFTG--EVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMK 705
Query: 240 QH-GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNNDSY 298
H +SEEEA++ + NA +++N AR+M + Y D
Sbjct: 706 DHPKISEEEALQHVYSVMENALEELNREFVNNKIPDIYKRLVFET-ARIMQLFYMQGDGL 764
Query: 299 TNPHLM--KDHVAALLKDPV 316
T H M K+HV L PV
Sbjct: 765 TLSHDMEIKEHVKNCLFQPV 784
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 177/320 (55%), Gaps = 6/320 (1%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFNI+Q HQEE++++ W+++ +P F R+R +E YF + +EP++ R +
Sbjct: 497 LDFNIIQSIHQEEMKNVTSWFRDSGLP-LFTFARERPLEFYFLVAAGTYEPQYAKCRFLF 555
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
TKV + +++DD+YD YGT++EL+LF A+ RWDLS + LP+Y+KLCY D E
Sbjct: 556 TKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVA 615
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
+ + + F ++ + + Y EA W +YVPT++EY++ + S G +L S
Sbjct: 616 WEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLS 675
Query: 182 SFLGME-DIVTKEAFEWV--SGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYM 238
L M+ ++++EA E V G + + +S+I RL DD ++K E+ RG +AS++ECYM
Sbjct: 676 GVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYM 735
Query: 239 KQHG-VSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNNDS 297
K H +EEEA+ + A K++ R+ V++++ D
Sbjct: 736 KDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDG 795
Query: 298 YTNPHL-MKDHVAALLKDPV 316
+ L +KDH+ L +P+
Sbjct: 796 FGVSKLEVKDHIKECLIEPL 815
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 134/262 (51%), Gaps = 4/262 (1%)
Query: 2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
LDFNI+Q HQEEL+ + RWWK + + + F R RV E YF FEP++ R
Sbjct: 440 LDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYF--SSATFEPEYSATRIAF 496
Query: 62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
TK+ + + DD+ D + T++EL+ F ++RWD S + +PE ++ C+ E
Sbjct: 497 TKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVN 556
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
D+ L ++ ++ Y+ E W + Y+PT EEY++ +S G +
Sbjct: 557 NDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQ 616
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
L M ++V + E V + + S+ RL +D +++ E+ RG AS + CYMK +
Sbjct: 617 PILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDN 676
Query: 242 -GVSEEEAVKVFREKVGNAWKD 262
G +EE+A+K V A K+
Sbjct: 677 PGATEEDAIKHICRVVDRALKE 698
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,881,337
Number of Sequences: 62578
Number of extensions: 329624
Number of successful extensions: 820
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 20
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)