Query 043754
Match_columns 320
No_of_seqs 195 out of 850
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 13:41:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 6.9E-99 2E-103 736.6 28.9 318 1-318 236-554 (554)
2 3n0f_A Isoprene synthase; terp 100.0 6.8E-98 2E-102 730.6 29.5 317 1-317 234-551 (555)
3 3m00_A Aristolochene synthase; 100.0 9.1E-98 3E-102 728.2 29.7 317 1-318 232-550 (550)
4 2ong_A 4S-limonene synthase; m 100.0 5.5E-93 1.9E-97 699.9 29.7 317 1-317 225-543 (543)
5 3sdr_A Alpha-bisabolene syntha 100.0 1.1E-92 3.9E-97 720.7 32.2 317 1-318 496-817 (817)
6 1n1b_A (+)-bornyl diphosphate 100.0 9.8E-93 3.4E-97 697.7 28.3 317 1-317 231-549 (549)
7 3s9v_A Abietadiene synthase, c 100.0 3.9E-92 1.3E-96 714.2 32.0 315 1-317 468-785 (785)
8 2j5c_A 1,8-cineole synthase; t 100.0 1.8E-92 6.3E-97 697.7 26.2 316 1-317 252-569 (569)
9 3p5p_A Taxadiene synthase; cla 100.0 9.5E-92 3.3E-96 709.6 31.8 316 1-319 439-757 (764)
10 3pya_A ENT-copalyl diphosphate 100.0 1.1E-59 3.7E-64 471.3 17.1 262 1-317 443-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 3E-53 1E-57 396.9 16.3 255 5-268 12-271 (337)
12 1di1_A Aristolochene synthase; 100.0 6E-51 2E-55 375.2 20.4 243 9-267 12-264 (300)
13 3bny_A Aristolochene synthase; 100.0 8.3E-50 2.8E-54 371.0 17.8 248 4-267 21-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 3.9E-48 1.3E-52 368.0 20.3 251 10-267 57-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 2.5E-35 8.4E-40 282.5 19.3 251 9-267 125-390 (433)
16 1yyq_A Trichodiene synthase; t 99.8 6.3E-20 2.1E-24 172.4 15.1 233 13-266 30-276 (374)
17 3lmd_A Geranylgeranyl pyrophos 92.4 1.4 4.8E-05 40.6 11.9 103 131-241 160-275 (360)
18 3ipi_A Geranyltranstransferase 90.5 1.5 5.3E-05 39.2 9.9 142 132-288 128-279 (295)
19 3acx_A Dehydrosqualene synthas 87.1 15 0.00052 32.4 21.8 207 41-281 27-247 (293)
20 3rmg_A Octaprenyl-diphosphate 86.7 11 0.00037 34.2 13.0 86 131-222 133-220 (334)
21 3ts7_A Geranyltranstransferase 85.9 9.1 0.00031 34.6 11.9 111 141-264 158-281 (324)
22 4hd1_A Squalene synthase HPNC; 85.4 19 0.00065 31.8 21.4 169 40-247 27-199 (294)
23 3lsn_A Geranyltranstransferase 85.1 7.8 0.00027 34.7 11.0 134 143-298 154-299 (304)
24 3m0g_A Farnesyl diphosphate sy 84.9 5.2 0.00018 35.7 9.7 110 141-265 147-269 (297)
25 3oyr_A Trans-isoprenyl diphosp 84.0 23 0.0008 32.1 13.9 87 131-223 151-239 (345)
26 3mzv_A Decaprenyl diphosphate 83.0 27 0.00092 31.6 15.0 86 131-222 139-226 (341)
27 1rtr_A Geranyltranstransferase 82.2 17 0.00057 32.4 11.9 111 141-265 148-271 (301)
28 2ftz_A Geranyltranstransferase 81.0 21 0.00071 31.5 12.0 120 132-265 135-264 (284)
29 3p8l_A Geranyltranstransferase 80.8 11 0.00038 33.6 10.2 110 142-265 157-279 (302)
30 3p8r_A Geranyltranstransferase 80.7 7 0.00024 34.9 8.9 111 142-265 159-282 (302)
31 1wy0_A Geranylgeranyl pyrophos 80.3 19 0.00064 32.6 11.8 85 132-222 138-224 (342)
32 3lom_A Geranyltranstransferase 78.5 15 0.00051 32.9 10.3 112 142-264 159-282 (313)
33 4f62_A Geranyltranstransferase 77.6 13 0.00043 33.5 9.6 110 143-265 153-275 (317)
34 3pko_A Geranylgeranyl pyrophos 76.5 43 0.0015 30.1 16.9 102 132-240 144-258 (334)
35 2h8o_A Geranyltranstransferase 76.4 14 0.00048 33.5 9.6 111 141-265 192-315 (335)
36 4dhd_A Polyprenyl synthetase; 74.6 20 0.00069 32.7 10.2 86 132-222 133-231 (358)
37 3uca_A Geranyltranstransferase 70.9 24 0.00083 31.7 9.7 111 142-265 181-304 (324)
38 3npk_A Geranyltranstransferase 70.6 48 0.0017 29.2 11.5 127 140-286 144-280 (291)
39 3apz_A Geranyl diphosphate syn 68.2 32 0.0011 31.1 10.0 86 132-223 154-241 (348)
40 3pde_A Farnesyl-diphosphate sy 66.7 33 0.0011 30.6 9.6 110 142-265 156-278 (309)
41 1rqj_A Geranyltranstransferase 65.5 42 0.0014 29.7 10.0 111 141-265 152-276 (299)
42 3nf2_A Putative polyprenyl syn 64.4 39 0.0013 30.7 9.8 86 132-222 144-230 (352)
43 3llw_A Geranyltranstransferase 61.5 24 0.00082 31.5 7.7 112 141-264 159-280 (311)
44 1wmw_A Geranylgeranyl diphosph 61.2 91 0.0031 27.8 13.0 84 132-222 131-218 (330)
45 2j1p_A Geranylgeranyl pyrophos 57.1 12 0.0004 33.2 4.8 108 143-265 162-272 (293)
46 2qis_A Farnesyl pyrophosphate 49.8 91 0.0031 28.4 9.7 88 132-223 177-271 (374)
47 1uby_A FPS, farnesyl diphospha 49.2 79 0.0027 28.8 9.2 88 132-223 170-264 (367)
48 2q80_A Geranylgeranyl pyrophos 46.0 1.4E+02 0.0048 26.2 10.1 83 131-222 111-195 (301)
49 2azj_A Geranylgeranyl pyrophos 42.9 1.2E+02 0.004 26.6 9.0 116 132-264 136-257 (289)
50 2e8v_A Geranylgeranyl pyrophos 42.2 54 0.0019 29.5 6.8 86 132-223 132-221 (340)
51 3aqb_B Component B of hexapren 40.5 79 0.0027 28.2 7.6 86 132-223 131-218 (325)
52 3kra_B Geranyl diphosphate syn 39.3 34 0.0012 29.9 4.8 69 143-218 151-221 (274)
53 3tc1_A Octaprenyl pyrophosphat 39.2 2E+02 0.007 25.4 12.2 82 132-222 123-206 (315)
54 1yhl_A Farnesyl pyrophosphate 38.8 76 0.0026 28.7 7.3 87 132-222 152-256 (362)
55 3fau_A NEDD4-binding protein 2 34.4 36 0.0012 23.6 3.4 23 241-263 6-28 (82)
56 2her_A Fragment, farnesyl pyro 30.5 3.1E+02 0.011 24.9 10.9 86 132-222 169-260 (368)
57 1tr8_A Conserved protein (MTH1 27.5 41 0.0014 24.8 2.8 24 231-254 66-89 (102)
58 2zqe_A MUTS2 protein; alpha/be 24.4 69 0.0024 22.4 3.5 21 241-261 10-30 (83)
59 1v4e_A Octoprenyl-diphosphate 22.9 1.2E+02 0.0042 26.6 5.6 83 131-223 127-211 (299)
60 1d0q_A DNA primase; zinc-bindi 22.1 72 0.0025 23.2 3.3 29 227-255 64-92 (103)
61 3lk5_A Geranylgeranyl pyrophos 21.9 2.1E+02 0.0073 26.0 7.2 76 141-222 185-263 (380)
62 2d9i_A NEDD4-binding protein 2 21.9 72 0.0025 22.7 3.2 22 241-262 14-35 (96)
63 2q58_A Fragment, farnesyl pyro 21.9 69 0.0024 29.2 3.8 88 133-223 170-261 (368)
64 3vj8_A Squalene synthase; farn 21.6 4.3E+02 0.015 23.5 19.5 201 41-264 26-244 (343)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=6.9e-99 Score=736.61 Aligned_cols=318 Identities=52% Similarity=0.961 Sum_probs=302.0
Q ss_pred CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT 80 (320)
Q Consensus 1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t 80 (320)
|||||+||++||+||++++||||++||.+++||+|||+++||||++|++|||++|.+|++|||+++|++++||+||.|||
T Consensus 236 kldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT 315 (554)
T 3g4d_A 236 KIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 78999999999999999999999999977999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754 81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP 160 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P 160 (320)
++|++.||+||+|||+++++.||+|||+||.+++++++|++.++.++||++++++++++|++++++|++||+|+++|++|
T Consensus 316 leEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvP 395 (554)
T 3g4d_A 316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKP 395 (554)
T ss_dssp HHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999899998999999999999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHhh
Q 043754 161 TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240 (320)
Q Consensus 161 t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e 240 (320)
|+||||+||.+|+|++++++++++++|+.+|+++++|++++|+++++++.++||+|||+||++|+++|+++|+|+|||+|
T Consensus 396 T~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke 475 (554)
T 3g4d_A 396 SFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE 475 (554)
T ss_dssp CHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHH
T ss_pred CHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhhccccC
Q 043754 241 HGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNP-HLMKDHVAALLKDPVFF 318 (320)
Q Consensus 241 ~g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~~~~-~~~~~~i~~~l~~p~~~ 318 (320)
+|+|+|+|+++++++|+++||+||+++++++++|++|+++++|++|+++++|++|||||.| ..||++|++||++|||+
T Consensus 476 ~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 476 YGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999988999999999999999999999999999998 78999999999999986
No 2
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=6.8e-98 Score=730.61 Aligned_cols=317 Identities=35% Similarity=0.669 Sum_probs=307.6
Q ss_pred CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT 80 (320)
Q Consensus 1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t 80 (320)
|||||+||++||+||++++||||++||.+++||+|||+++||||++|++|||++|.+|++|||+++|++++||+||.|||
T Consensus 234 KlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt 313 (555)
T 3n0f_A 234 ILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGT 313 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCC
Confidence 79999999999999999999999999977999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754 81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP 160 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P 160 (320)
+||++.||+||+|||+++++.||+|||+||.+++++++|++.++.+++|.++.++++++|+++++||++||+|+++|++|
T Consensus 314 ~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvP 393 (555)
T 3n0f_A 314 LDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTP 393 (555)
T ss_dssp HHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999988887777899999999999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHhh
Q 043754 161 TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240 (320)
Q Consensus 161 t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e 240 (320)
|+||||+||.+|+|+++++++++++||..+|+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|
T Consensus 394 T~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke 473 (555)
T 3n0f_A 394 TFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRT 473 (555)
T ss_dssp CHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHH
T ss_pred CHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhhcccc
Q 043754 241 HGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNP-HLMKDHVAALLKDPVF 317 (320)
Q Consensus 241 ~g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~~~~-~~~~~~i~~~l~~p~~ 317 (320)
+|+|+|+|+++++++|+++||+||+++++++++|++|+++++|++|+++++|++|||||.| ..||++|++||++|||
T Consensus 474 ~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 474 KGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999988999999999999999999999999999999 6899999999999996
No 3
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=9.1e-98 Score=728.17 Aligned_cols=317 Identities=48% Similarity=0.895 Sum_probs=305.7
Q ss_pred CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT 80 (320)
Q Consensus 1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t 80 (320)
|||||+||++||+||++++||||++||.+++||+|||+++||||++|++|||++|.+|++|||+++|++++||+||.|||
T Consensus 232 kldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT 311 (550)
T 3m00_A 232 KLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 311 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCC
Confidence 78999999999999999999999999977999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754 81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP 160 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P 160 (320)
+||++.||+||+|||+++++.||+|||+||.+++++++|++.++.++||++++++++++|++++++|++||+|+++||+|
T Consensus 312 leEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvP 391 (550)
T 3m00_A 312 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTP 391 (550)
T ss_dssp HHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999899998999999999999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHhh
Q 043754 161 TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240 (320)
Q Consensus 161 t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e 240 (320)
|+||||+||.+|+|++++++++++++ +.+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|
T Consensus 392 T~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke 470 (550)
T 3m00_A 392 PVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 470 (550)
T ss_dssp CHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHH
T ss_pred CHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHh
Confidence 99999999999999999999998776 67999999999899999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCc-hhHHHHHHHhhhccccC
Q 043754 241 HGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNN-DSYTNP-HLMKDHVAALLKDPVFF 318 (320)
Q Consensus 241 ~g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~-D~~~~~-~~~~~~i~~~l~~p~~~ 318 (320)
+|+|+|+|+++++++|+++||+||+++++++++|++|+++++|++|+++++|++| ||||.| ..||++|++||++|||+
T Consensus 471 ~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 471 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999988999999999999999999999998 999999 58999999999999986
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=5.5e-93 Score=699.91 Aligned_cols=317 Identities=34% Similarity=0.599 Sum_probs=310.1
Q ss_pred CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT 80 (320)
Q Consensus 1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t 80 (320)
|||||+||++||+||++++|||+++||.+++||+|+|++++|||++|++|||++|.+|+++||+++|++++||+||.|||
T Consensus 225 kldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt 304 (543)
T 2ong_A 225 ILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGT 304 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 79999999999999999999999999976799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754 81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP 160 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P 160 (320)
++|++.||++|+|||+++++.+|+|||+||.++++++++++.++.+.+|.+++++++++|++++++|++||+|+.+|++|
T Consensus 305 ~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vP 384 (543)
T 2ong_A 305 LEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKP 384 (543)
T ss_dssp HHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999998887777899999999999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHhh
Q 043754 161 TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240 (320)
Q Consensus 161 t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e 240 (320)
|+||||++|.+|+|++++++++++++|..+|+++++|+.++|++++++++++||+|||+||++|+++|+++|+|.|||+|
T Consensus 385 t~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke 464 (543)
T 2ong_A 385 SLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSD 464 (543)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHH
T ss_pred CHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhhcccc
Q 043754 241 HGVSEEEAVKVFREKVGNAWKDINEEL-MRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNP-HLMKDHVAALLKDPVF 317 (320)
Q Consensus 241 ~g~s~eeA~~~i~~~i~~~~k~l~~~~-~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~~~~-~~~~~~i~~~l~~p~~ 317 (320)
+|+|+|+|+++++++|+++||+||+++ ++++++|++|+++++|++|+++++|+++||||.| .++|++|++||++|||
T Consensus 465 ~g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 465 YNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999 9988899999999999999999999999999999 6899999999999997
No 5
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.1e-92 Score=720.66 Aligned_cols=317 Identities=33% Similarity=0.613 Sum_probs=301.3
Q ss_pred CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT 80 (320)
Q Consensus 1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t 80 (320)
|||||+||++||+||++++||||++|+ .++||+|||++|||||++|++|||++|.+|++|||+++|++++||+||.|||
T Consensus 496 KlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT 574 (817)
T 3sdr_A 496 KLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGT 574 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 799999999999999999999999999 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754 81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP 160 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P 160 (320)
+||++.||+||+|||.++++.||+|||+||.+++++++|++.++.+++|.++.++++++|++++++|++||+|+++||+|
T Consensus 575 ~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvP 654 (817)
T 3sdr_A 575 LDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVP 654 (817)
T ss_dssp HHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999988777677899999999999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhH-HHHHHHhcCCCCCCHHHHhhcc--CchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHH
Q 043754 161 TMEEYMRVALLSCGYLL-LSTSSFLGMEDIVTKEAFEWVS--GNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECY 237 (320)
Q Consensus 161 t~eEYl~~~~~s~g~~~-~~~~~~~~~g~~l~~e~~~~~~--~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~y 237 (320)
|+||||+||.+|+|+++ ++.++++++|..+|+++++|+. +.|+|+++++.|+||+|||+||++|+++|+++|+|+||
T Consensus 655 t~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cY 734 (817)
T 3sdr_A 655 TLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECY 734 (817)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHH
T ss_pred CHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHH
Confidence 99999999999999999 8888899999999999999965 44599999999999999999999999999999999999
Q ss_pred HhhC-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhhcc
Q 043754 238 MKQH-GVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNP-HLMKDHVAALLKDP 315 (320)
Q Consensus 238 m~e~-g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~~~~-~~~~~~i~~~l~~p 315 (320)
|+|+ |+|+|+|+++++++|+++||+||++|++++++|++|+++++|++|+++++|+++||||.| .+||++|++||++|
T Consensus 735 Mke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~p 814 (817)
T 3sdr_A 735 MKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEP 814 (817)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCC
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCC
Confidence 9999 799999999999999999999999999988999999999999999999999999999998 68999999999999
Q ss_pred ccC
Q 043754 316 VFF 318 (320)
Q Consensus 316 ~~~ 318 (320)
||+
T Consensus 815 i~l 817 (817)
T 3sdr_A 815 LPL 817 (817)
T ss_dssp CCC
T ss_pred CCC
Confidence 985
No 6
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=9.8e-93 Score=697.72 Aligned_cols=317 Identities=34% Similarity=0.670 Sum_probs=298.6
Q ss_pred CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT 80 (320)
Q Consensus 1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t 80 (320)
|||||+||++||+||++++|||+++||.+++||+|+|++++|||++|++|||++|.+|+++||+++|++++||+||.|||
T Consensus 231 kldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt 310 (549)
T 1n1b_A 231 KLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGT 310 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 79999999999999999999999999976799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754 81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP 160 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P 160 (320)
++|++.||++|+|||+++++.+|+|||+||.++++++++++.++.+.+|.++.++++++|++++++|++||+|+++|++|
T Consensus 311 ~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vP 390 (549)
T 1n1b_A 311 LDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTP 390 (549)
T ss_dssp HHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999998777777899999999999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHH-HhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHh
Q 043754 161 TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEA-FEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMK 239 (320)
Q Consensus 161 t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~-~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~ 239 (320)
|+||||++|.+|+|++++++++++++|..+|+++ ++|+.++|+++++++.++||+|||+||++|+++|+++|+|.|||+
T Consensus 391 t~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMk 470 (549)
T 1n1b_A 391 SLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMK 470 (549)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHH
T ss_pred CHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHH
Confidence 9999999999999999999999999999999999 999989999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhhcccc
Q 043754 240 QHGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNP-HLMKDHVAALLKDPVF 317 (320)
Q Consensus 240 e~g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~~~~-~~~~~~i~~~l~~p~~ 317 (320)
|+|+|+|+|+++++++|+++||+||+++++++++|++|+++++|++|+++++|+++||||.| .+||++|++||++|||
T Consensus 471 e~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 471 ETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999988999999999999999999999999999999 5899999999999997
No 7
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=3.9e-92 Score=714.18 Aligned_cols=315 Identities=33% Similarity=0.602 Sum_probs=301.1
Q ss_pred CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT 80 (320)
Q Consensus 1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t 80 (320)
|||||+||++||+||++++||||++|+ .++||+|||++|||||++|++|||++|.+|++|||+++|++++||+||.|||
T Consensus 468 KlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT 546 (785)
T 3s9v_A 468 KLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGS 546 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 789999999999999999999999999 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754 81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP 160 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P 160 (320)
+||++.||+||+|||.++++.||+|||+||.+++++++|++.++.+.+|.++.++++++|++++++|++||+|+++||+|
T Consensus 547 ~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvP 626 (785)
T 3s9v_A 547 LDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVP 626 (785)
T ss_dssp HHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999888774444889999999999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHhh
Q 043754 161 TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240 (320)
Q Consensus 161 t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e 240 (320)
|+||||+||.+|+|++++++++++++|..+|+++++|+..+|+++++++.|+||+|||+||++|+++|+++|+|+|||+|
T Consensus 627 T~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke 706 (785)
T 3s9v_A 627 SFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKD 706 (785)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHH
T ss_pred CHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHh
Confidence 99999999999999999999999999999999999996556999999999999999999999999999999999999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCch--hHHHHHHHhhhcccc
Q 043754 241 H-GVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNPH--LMKDHVAALLKDPVF 317 (320)
Q Consensus 241 ~-g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~~~~~--~~~~~i~~~l~~p~~ 317 (320)
+ |+|+|+|+++++++|+++||+||++|++++ +|++|+++++|++|+++++|+++||||.|+ +||++|++||++||.
T Consensus 707 ~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 707 HPKISEEEALQHVYSVMENALEELNREFVNNK-IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 9 999999999999999999999999999877 999999999999999999999999999994 599999999999983
No 8
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=1.8e-92 Score=697.73 Aligned_cols=316 Identities=36% Similarity=0.642 Sum_probs=291.2
Q ss_pred CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT 80 (320)
Q Consensus 1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t 80 (320)
|||||+||++||+||++++|||+++||.+++||+|+|++++|||++|++|||++|.+|+++||+++|++++||+||.|||
T Consensus 252 kldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT 331 (569)
T 2j5c_A 252 KLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGT 331 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 79999999999999999999999999976799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754 81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP 160 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P 160 (320)
++|++.||++|+|||+++++.+|+|||+||.++++++++++.++.+.++.+++++++++|++++++|++||+|+.+|++|
T Consensus 332 ~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vP 411 (569)
T 2j5c_A 332 LEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKP 411 (569)
T ss_dssp HHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999998887777899999999999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHhh
Q 043754 161 TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240 (320)
Q Consensus 161 t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e 240 (320)
|+||||++|.+|+|++++++++++++|..+|+++++|+.++|++++++++++||+|||+||++|+++|+++|+|.|||+|
T Consensus 412 t~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke 491 (569)
T 2j5c_A 412 SLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNE 491 (569)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC---
T ss_pred CHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCc-hhHHHHHHHhhhcccc
Q 043754 241 HGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNN-DSYTNP-HLMKDHVAALLKDPVF 317 (320)
Q Consensus 241 ~g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~-D~~~~~-~~~~~~i~~~l~~p~~ 317 (320)
+|+|+|+|+++++++|+++||+||+++++ +++|++|+++++|++|+++++|+++ ||||.| .+||++|++||++|||
T Consensus 492 ~g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 492 KNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999 8999999999999999999999999 999999 6899999999999997
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=9.5e-92 Score=709.63 Aligned_cols=316 Identities=30% Similarity=0.529 Sum_probs=298.0
Q ss_pred CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT 80 (320)
Q Consensus 1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t 80 (320)
|||||+||++||+||++++||||++|+ .++||+|||+++||||++| |||++|.+|++|||+++|++++||+||.|||
T Consensus 439 KlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT 515 (764)
T 3p5p_A 439 KLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFAT 515 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 799999999999999999999999999 6999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754 81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP 160 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P 160 (320)
+||++.||+||+|||+++++.||+|||+||.+++++++|++.++.+.+|.++.++++++|++++++|++||+|+++||+|
T Consensus 516 ~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvP 595 (764)
T 3p5p_A 516 LDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIP 595 (764)
T ss_dssp HHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999888764444889999999999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHhh
Q 043754 161 TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240 (320)
Q Consensus 161 t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e 240 (320)
|+||||+||.+|+|++++++.+++++|..+|+++++|+..+|+++++++.|+||+|||+||++|+++|+++|+|+|||+|
T Consensus 596 T~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke 675 (764)
T 3p5p_A 596 TFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKD 675 (764)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHH
T ss_pred CHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHh
Confidence 99999999999999999999999999999999999996666999999999999999999999999999999999999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhhcccc
Q 043754 241 H-GVSEEEAVKVFREKVGNAWKDINEELMR-PPVVPMPLLERVLNLARLMDVLYQNNDSYTNP-HLMKDHVAALLKDPVF 317 (320)
Q Consensus 241 ~-g~s~eeA~~~i~~~i~~~~k~l~~~~~~-~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~~~~-~~~~~~i~~~l~~p~~ 317 (320)
+ |+|+|+|+++++++|+++||+||++|++ ++++|++|+++++|++|+++++|+++||||.| .+||++|++||++||+
T Consensus 676 ~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 755 (764)
T 3p5p_A 676 NPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQ 755 (764)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCc
Confidence 9 7999999999999999999999999997 77899999999999999999999999999998 5699999999999998
Q ss_pred CC
Q 043754 318 FE 319 (320)
Q Consensus 318 ~~ 319 (320)
+.
T Consensus 756 ~~ 757 (764)
T 3p5p_A 756 VG 757 (764)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.1e-59 Score=471.27 Aligned_cols=262 Identities=15% Similarity=0.177 Sum_probs=222.4
Q ss_pred CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754 1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT 80 (320)
Q Consensus 1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t 80 (320)
|||||+||++||+||++++||||++|| .++||+|||++|||||++|++|||++|.+|++|||.+++++++||+||.||
T Consensus 443 KlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG- 520 (727)
T 3pya_A 443 KQDYNNCQAQHQLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS- 520 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH-
T ss_pred HHhHHHHHHHhHHHHhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch-
Confidence 799999999999999999999999999 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchh---------hccc---Cchh--HHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHH
Q 043754 81 IEELELFATAIERWDLS---------AIDL---LPEY--IKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRS 146 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~---------~~~~---lp~~--~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~ 146 (320)
||++.||++|+|||.+ +.+. +|+| ||+||.+|++++||++.++.+.+|.++.++++++|.+|+++
T Consensus 521 -eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s 599 (727)
T 3pya_A 521 -DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEK 599 (727)
T ss_dssp -HHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 9999999999999974 3332 2777 89999999999999998887766778999999999999999
Q ss_pred HHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhh
Q 043754 147 YIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQ 226 (320)
Q Consensus 147 ~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~ 226 (320)
++.|++ + +| |. +++.++.+..|..+++ ++.+ +.+..|.++++.++||+||+.+|++|+
T Consensus 600 ~~~Ea~-~--------~E---------Ae-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~- 657 (727)
T 3pya_A 600 WKLYGD-E--------GE---------GE-LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE- 657 (727)
T ss_dssp HHHHSS-C--------CH---------HH-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH-
T ss_pred HHHhcc-c--------cc---------ee-eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-
Confidence 999987 2 33 11 4445555555888888 7765 677779999999999999999999976
Q ss_pred cCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhhhhhcccCCCCCCchhH
Q 043754 227 RGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINEELMRP--PVVPMPLLERVLNLARLMDVLYQNNDSYTNPHLM 304 (320)
Q Consensus 227 ~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~~~~~~--~~~p~~~~~~~~n~~r~~~~~Y~~~D~~~~~~~~ 304 (320)
.+++.+.|+..|++|++.|+++ +.+|++| +|++++|++ ||. |||+|+ |
T Consensus 658 ----------------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~--tf~~V~ksF--Yy~---ay~~p~-i 707 (727)
T 3pya_A 658 ----------------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI--TFLDVAKAF--YYF---ALCGDH-L 707 (727)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH--HHHHHHHHH--HHH---HHHTTS-C
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc--cHHHHHHHH--Hhh---hcCCHH-H
Confidence 3468889999999999999984 4799999 777777766 665 999999 9
Q ss_pred HHHHHHhhhcccc
Q 043754 305 KDHVAALLKDPVF 317 (320)
Q Consensus 305 ~~~i~~~l~~p~~ 317 (320)
+.||++||||||-
T Consensus 708 ~~hI~kVl~~~~~ 720 (727)
T 3pya_A 708 QTHISKVLFQKVG 720 (727)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHHcCccc
Confidence 9999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=3e-53 Score=396.92 Aligned_cols=255 Identities=15% Similarity=0.089 Sum_probs=230.0
Q ss_pred HHhHHHHHHHHHHHHH-HhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHH-HHHHHHHHHHHHHhhhhcc--CC
Q 043754 5 NILQKQHQEELRDIVR-WWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARK-ILTKVISMASIIDDIYDAY--GT 80 (320)
Q Consensus 5 n~~Q~~hq~El~~l~~-W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl-~~ak~~~l~~~iDD~~D~~--~t 80 (320)
..-++.|.+|++.... ||+++|+.+ .+++|+|++++|||.++++++|+++.+|+ ++||++.|+|++||+||.+ ||
T Consensus 12 p~~~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~ 90 (337)
T 1ps1_A 12 PGRQSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGEN 90 (337)
T ss_dssp CCCCCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCC
Confidence 3345678999977665 999999964 58999999999999999999999999999 9999999999999999998 69
Q ss_pred HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754 81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP 160 (320)
Q Consensus 81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P 160 (320)
++|++.|++++.+|+.+ .+|+++++++.++.+++++++... +....++++++|++|+.++++||+|+.+|++|
T Consensus 91 ~ee~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P 163 (337)
T 1ps1_A 91 PEDTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGM----TPAWCARSARHWRNYFDGYVDEAESRFWNAPC 163 (337)
T ss_dssp HHHHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999864 478899999999999999997643 33457899999999999999999999999999
Q ss_pred -ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHh
Q 043754 161 -TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMK 239 (320)
Q Consensus 161 -t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~ 239 (320)
|++||+++|+.|+|+.++++++++++|..+|++++++ +.++++.++++.++||+|||+||+||+++|+++|+|.|||+
T Consensus 164 ~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~ 242 (337)
T 1ps1_A 164 DSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRR 242 (337)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHH
T ss_pred CCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHH
Confidence 9999999999999999999999999999999999887 56679999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 043754 240 QHGVSEEEAVKVFREKVGNAWKDINEELM 268 (320)
Q Consensus 240 e~g~s~eeA~~~i~~~i~~~~k~l~~~~~ 268 (320)
++|+|+|+|++++.++++++|+++|++.-
T Consensus 243 ~~g~s~eeA~~~v~~~i~~~~~~~~~~~~ 271 (337)
T 1ps1_A 243 EHGWSKSRSVSHMQNEVRARLEQYLLLES 271 (337)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999873
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=6e-51 Score=375.21 Aligned_cols=243 Identities=14% Similarity=0.117 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHH-HhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHH-HHHHHHHHHHHHHhhhhccCCHHHHHH
Q 043754 9 KQHQEELRDIVR-WWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARK-ILTKVISMASIIDDIYDAYGTIEELEL 86 (320)
Q Consensus 9 ~~hq~El~~l~~-W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl-~~ak~~~l~~~iDD~~D~~~t~~el~~ 86 (320)
..|.+|++...+ ||+++|+. +.+++|+|++++|||.++++++|+++.+|+ ++||++.|+|++||+||. |+.+|++.
T Consensus 12 ~P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~ 89 (300)
T 1di1_A 12 HPRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEA 89 (300)
T ss_dssp CTTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHH
Confidence 568899988776 77999995 569999999999999999899999999999 999999999999999999 78999999
Q ss_pred HHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHH
Q 043754 87 FATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYM 166 (320)
Q Consensus 87 ~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl 166 (320)
|++++.+|+.+ +.+|+++++++.++++++++++..+. .+.++.|+.++++++ |++|+.+|++||++||+
T Consensus 90 ~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl 158 (300)
T 1di1_A 90 YNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYL 158 (300)
T ss_dssp HHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHH
T ss_pred HHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHH
Confidence 99999999875 46899999999999999999987652 245677999999987 89999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCC--------cchhHHHHH
Q 043754 167 RVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGH--------VASAVECYM 238 (320)
Q Consensus 167 ~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~--------~~n~V~~ym 238 (320)
++|+.|+|+.+++.++++++|..+|+++++. .++++++++.++||+|||+||+||+++|+ ++|+|.|||
T Consensus 159 ~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 159 EYREKDVGKALLSALMRFSMGLRLSADELQD---MKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTCCCCHHHHHT---THHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHHhhhccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 9999999999999999999999999999983 69999999999999999999999999999 779999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 043754 239 KQHGVSEEEAVKVFREKVGNAWKDINEEL 267 (320)
Q Consensus 239 ~e~g~s~eeA~~~i~~~i~~~~k~l~~~~ 267 (320)
+++|+|+|+|++++.+++++.|+++|+..
T Consensus 236 ~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 236 EESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=8.3e-50 Score=371.00 Aligned_cols=248 Identities=16% Similarity=0.132 Sum_probs=222.3
Q ss_pred hHHhHHHHHHHHHHHHH-HhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHH-HHHHHHHHHHHHHhhhhccCCH
Q 043754 4 FNILQKQHQEELRDIVR-WWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARK-ILTKVISMASIIDDIYDAYGTI 81 (320)
Q Consensus 4 fn~~Q~~hq~El~~l~~-W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl-~~ak~~~l~~~iDD~~D~~~t~ 81 (320)
|..-.+.|.+|++.... ||+++|+..+ +++|+|++++|||.++++++|+++.+|+ ++||++.|+|++||+||. +++
T Consensus 21 ~p~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~ 98 (320)
T 3bny_A 21 FQPLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSF 98 (320)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CCh
Confidence 33445689999988777 7799999655 8999999999999999899999999999 899999999999999999 789
Q ss_pred HHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 043754 82 EELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPT 161 (320)
Q Consensus 82 ~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt 161 (320)
+|++.|++++.+|+.+ +.+|+++++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||
T Consensus 99 ~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps 167 (320)
T 3bny_A 99 EEGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMG 167 (320)
T ss_dssp HHHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCC
T ss_pred hhHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCC
Confidence 9999999999999864 4679999999999999999998654 2 23455566677 5999999999999999
Q ss_pred hHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCC--------cchh
Q 043754 162 MEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGH--------VASA 233 (320)
Q Consensus 162 ~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~--------~~n~ 233 (320)
++||+++|+.|+|+.++++++++++|..+|+++++. .++++++++.++||+|||+||+||+++|+ ++|+
T Consensus 168 ~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~ 244 (320)
T 3bny_A 168 LGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTS 244 (320)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccch
Confidence 999999999999999999999999999999999984 69999999999999999999999999998 7899
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 043754 234 VECYMKQHGVSEEEAVKVFREKVGNAWKDINEEL 267 (320)
Q Consensus 234 V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~~~ 267 (320)
|.|||+++|+|+|+|++++.+++++.++++++..
T Consensus 245 V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 245 VQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999866
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=3.9e-48 Score=367.98 Aligned_cols=251 Identities=11% Similarity=-0.004 Sum_probs=226.0
Q ss_pred HHHHHHH-HHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHH-HHHHHHHHHHHHHhhhhc--cC-CHHHH
Q 043754 10 QHQEELR-DIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARK-ILTKVISMASIIDDIYDA--YG-TIEEL 84 (320)
Q Consensus 10 ~hq~El~-~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl-~~ak~~~l~~~iDD~~D~--~~-t~~el 84 (320)
.|-++++ ++.+|++++|+. .-+++|+|+++++||.++++++|+++.+|+ ++||++.|+|++||+||. +| +++++
T Consensus 57 P~~~~v~~~~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~ 135 (382)
T 3kb9_A 57 PYWPKLQETTRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAW 135 (382)
T ss_dssp TTHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHH
Confidence 3555655 355699999995 447999999999999999999999999999 999999999999999996 55 99999
Q ss_pred HHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHH
Q 043754 85 ELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEE 164 (320)
Q Consensus 85 ~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eE 164 (320)
+.+++++.++- +....+|+++++++.++.+++++++..+.+ ...++++++|+++++++++||+|+.+|++||++|
T Consensus 136 ~~~~~~l~~~l-~~~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eE 210 (382)
T 3kb9_A 136 RRLRGLLHTAL-DSPGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEE 210 (382)
T ss_dssp HHHHHHHHHHH-HSCGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHh-cCCCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 99999998752 122335788899999999999999754322 3488999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHhhCCCC
Q 043754 165 YMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQHGVS 244 (320)
Q Consensus 165 Yl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s 244 (320)
|+++|++|+|+.+++.++++++|..+|++++++ +.+++++++++.++||+|||+||+||+++|+++|+|.|||+++|+|
T Consensus 211 Yl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s 289 (382)
T 3kb9_A 211 YLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLT 289 (382)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCC
T ss_pred HHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCC
Confidence 999999999999999999999999999999987 6778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 043754 245 EEEAVKVFREKVGNAWKDINEEL 267 (320)
Q Consensus 245 ~eeA~~~i~~~i~~~~k~l~~~~ 267 (320)
+|+|++++.++++++|++||+..
T Consensus 290 ~eeA~~~v~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 290 LEEAIGEVRRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999843
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=2.5e-35 Score=282.53 Aligned_cols=251 Identities=14% Similarity=0.094 Sum_probs=190.3
Q ss_pred HHHHHHHHH-HHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCc-hhHHH-HHHHHHHHHHHHHhhh-hccC-CHHH
Q 043754 9 KQHQEELRD-IVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKF-LLARK-ILTKVISMASIIDDIY-DAYG-TIEE 83 (320)
Q Consensus 9 ~~hq~El~~-l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~-s~~Rl-~~ak~~~l~~~iDD~~-D~~~-t~~e 83 (320)
..|-+|++. +..|.+++++... +-.|+++..+-|..++.+..|.. +.+|+ +.+|++.|+|++||.| |..| +.+.
T Consensus 125 nP~~~ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~ 203 (433)
T 3v1v_A 125 PVRVEEVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVG 203 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTT
T ss_pred CcCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 456777775 4459999876433 34577777764434333344999 78898 8899999999999995 9744 3222
Q ss_pred -HHHHHHH---HHhcchhhcccCch-----hHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHh
Q 043754 84 -LELFATA---IERWDLSAIDLLPE-----YIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWC 154 (320)
Q Consensus 84 -l~~~~~a---i~rwd~~~~~~lp~-----~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~ 154 (320)
...+..+ +..... ..+.-|. .-.++..+++++++++...+.+ ...++++++|++|+++|++||+|+
T Consensus 204 ~~~~l~~a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~ 278 (433)
T 3v1v_A 204 LGGRLLLAHTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWA 278 (433)
T ss_dssp HHHHHHHHHTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122221 111100 0000010 0124678999999999765433 348899999999999999999999
Q ss_pred hCCCCCChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcC-Ccchh
Q 043754 155 DQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRG-HVASA 233 (320)
Q Consensus 155 ~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g-~~~n~ 233 (320)
.+|++||+||||++|+.| |+.+++.++.+++|..+|++++++ +..++|+++++.++||+|||.||+||+++| +++|+
T Consensus 279 ~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~ 356 (433)
T 3v1v_A 279 QTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNL 356 (433)
T ss_dssp HHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCH
T ss_pred hcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcH
Confidence 999999999999999999 778877888888999999999987 667789999999999999999999999995 78899
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 043754 234 VECYMKQHGVSEEEAVKVFREKVGNAWKDINEEL 267 (320)
Q Consensus 234 V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~~~ 267 (320)
|.|||+++|+|+|+|++++.+++++.++++.+..
T Consensus 357 V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 357 PVVIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.83 E-value=6.3e-20 Score=172.41 Aligned_cols=233 Identities=12% Similarity=-0.009 Sum_probs=170.5
Q ss_pred HHHHHHHHHhhhcC------------CCCCchhhhhhhhhhHHHHhccccCCCchhHHH-HHHHHHHHHHHHHhhhhccC
Q 043754 13 EELRDIVRWWKNFD------------VPNKLPFIRDRVVEGYFWILGVYFEPKFLLARK-ILTKVISMASIIDDIYDAYG 79 (320)
Q Consensus 13 ~El~~l~~W~~~~~------------l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl-~~ak~~~l~~~iDD~~D~~~ 79 (320)
+|-.+..+|..+.| +. --+-..++.+.+=.|.++..| |..+.+.+ .++++..|+|++||++|..+
T Consensus 30 e~r~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~ 107 (374)
T 1yyq_A 30 EERIENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY 107 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH
T ss_pred HHHHHHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH
Confidence 44455668999988 53 223445566666556666555 88888876 88999999999999998654
Q ss_pred CHHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCC
Q 043754 80 TIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYV 159 (320)
Q Consensus 80 t~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~ 159 (320)
+++..|.+.+-+ +. . ++ .++..++.+.+.++... .+..+..++.++|.+|+.++..|+.. .+..
T Consensus 108 --~~l~~~~~~ll~--G~-~---~~--~Pl~~al~dl~~rl~~~----~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~ 171 (374)
T 1yyq_A 108 --PTMVNYFDDLQA--GR-E---QA--HPWWALVNEHFPNVLRH----FGPFCSLNLIRSTLDFFEGCWIEQYN--FGGF 171 (374)
T ss_dssp --HHHTTHHHHHHH--TC-C---CS--SHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHTTC--CCCC
T ss_pred --HHHHHHHHHHhc--CC-C---CC--ChHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHhc--cCCC
Confidence 666767766543 21 1 11 25667777777776433 34456889999999999999999863 6778
Q ss_pred CChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhc-CCcchhHHHHH
Q 043754 160 PTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQR-GHVASAVECYM 238 (320)
Q Consensus 160 Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~-g~~~n~V~~ym 238 (320)
|+.++|...++.++|+........ .+..+.++... ++.+..+++....++.|+|||.||.||... |+.+|+|.+++
T Consensus 172 p~~~~Y~~~rR~~sG~~E~~~~~~--~P~~~~~e~~~-~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~ 248 (374)
T 1yyq_A 172 PGSHDYPQFLRRMNGLGHCVGASL--WPKEQFNERSL-FLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYV 248 (374)
T ss_dssp TTCTTHHHHHHHHHHCHHHHHHTT--CCTTTCCTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHH
T ss_pred CCHHHHHHHHHhhccHHHHHHHhh--ccccccchhhc-chhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhheh
Confidence 999999999888888865444322 22223222111 122345566667799999999999999984 99999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 043754 239 KQHGVSEEEAVKVFREKVGNAWKDINEE 266 (320)
Q Consensus 239 ~e~g~s~eeA~~~i~~~i~~~~k~l~~~ 266 (320)
.++|+|.++|++++..++..+..++.+.
T Consensus 249 ~~~g~S~~eAl~~v~~~~~~~~~r~~~~ 276 (374)
T 1yyq_A 249 VSDEISLHEALEKLTQDTLHSSKQMVAV 276 (374)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888663
No 17
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=92.39 E-value=1.4 Score=40.62 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=67.0
Q ss_pred ccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHH
Q 043754 131 YGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQAS 208 (320)
Q Consensus 131 ~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~ 208 (320)
.....+.+++...+.+-..+..|.... ||.++|++.-..-+|..+..+.-. +..| .+++..+. ..++-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~---l~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDA---LKNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 346778888899999999998887655 999999988777666665433211 1123 34554443 35667777
Q ss_pred HhHHHHhcCccchHHh-----------hhcCCcchhHHHHHhhC
Q 043754 209 SIICRLMDDIVSHKFE-----------QQRGHVASAVECYMKQH 241 (320)
Q Consensus 209 ~~i~rL~NDi~S~~~E-----------~~~g~~~n~V~~ym~e~ 241 (320)
++..-+.||+..+.-+ ...|.. +...+|..++
T Consensus 233 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8888888888776432 233443 6665665444
No 18
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=90.49 E-value=1.5 Score=39.15 Aligned_cols=142 Identities=11% Similarity=0.126 Sum_probs=78.9
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQASS 209 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~ 209 (320)
+...+.++....+.|-..+..|... .||.++|+..-..-+|.-+..+... ...| .+++..+. ..++-+..+
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag--~~~~~~~~---l~~~g~~lG 200 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGG--AEEELAER---FSHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 4556667777788888877777543 4899999988766666654332211 1122 35554443 366777788
Q ss_pred hHHHHhcCccchHHhh-----hcCCcchhHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH-HHHHHH
Q 043754 210 IICRLMDDIVSHKFEQ-----QRGHVASAVECYMKQHGV--SEEEAVKVFREKVGNAWKDINEELMRPPVVPM-PLLERV 281 (320)
Q Consensus 210 ~i~rL~NDi~S~~~E~-----~~g~~~n~V~~ym~e~g~--s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~-~~~~~~ 281 (320)
+..-+.||+..+.-+. ..|.. +...+|..+.+- ..+.|.+.+.+.++++.+.+. .+|. +-++..
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~-------~lp~~~~~~~L 272 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE-------TFRECPARDKL 272 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC-------C-CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT-------TSCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-------hCCCchHHHHH
Confidence 8888999988875443 22332 566666654421 144555555555565555544 3554 455666
Q ss_pred HHHHhhh
Q 043754 282 LNLARLM 288 (320)
Q Consensus 282 ~n~~r~~ 288 (320)
.++++.+
T Consensus 273 ~~l~~~~ 279 (295)
T 3ipi_A 273 FQITDYI 279 (295)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6666544
No 19
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=87.15 E-value=15 Score=32.35 Aligned_cols=207 Identities=15% Similarity=0.164 Sum_probs=105.5
Q ss_pred hHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHh-cchhhc--ccCchhHHHHHHHHHHHH
Q 043754 41 GYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGTIEELELFATAIER-WDLSAI--DLLPEYIKLCYCALLDAY 117 (320)
Q Consensus 41 ~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t~~el~~~~~ai~r-wd~~~~--~~lp~~~~~~~~~l~~~~ 117 (320)
+|+++.- .. | ...|-.+.-+-.+.-.+||+-|......+++.+-+.+++ .++... ...|. .++..++..++
T Consensus 27 sF~~a~~-~L-p--~~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~ 100 (293)
T 3acx_A 27 SFSYAFD-LL-P--EDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVA 100 (293)
T ss_dssp HHHHHHT-TS-C--HHHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHH
T ss_pred cHHHHHH-hC-C--HHHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHH
Confidence 4554443 33 4 345665556667777899999976544445555555543 111110 00022 36677776665
Q ss_pred HHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhh
Q 043754 118 SEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEW 197 (320)
Q Consensus 118 ~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~ 197 (320)
.+. +. -++.+.+++.++-. .......+|++|+..+...+.|+--.+++-.++... .++..+.
T Consensus 101 ~~~--------~l-----~~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~~ 162 (293)
T 3acx_A 101 QHK--------NI-----AFQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYDV 162 (293)
T ss_dssp HHS--------CC-----CHHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHHH
T ss_pred HHh--------CC-----CHHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHHH
Confidence 443 21 13455667777643 233445789988888887777766555555554321 1232221
Q ss_pred ccCchHHHHHHHhHHHHhcCccchHHhhhcCCc--chhHHHHHhhCCCCHHHH---------HHHHHHHHHHHHHHHHHh
Q 043754 198 VSGNPKIVQASSIICRLMDDIVSHKFEQQRGHV--ASAVECYMKQHGVSEEEA---------VKVFREKVGNAWKDINEE 266 (320)
Q Consensus 198 ~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~--~n~V~~ym~e~g~s~eeA---------~~~i~~~i~~~~k~l~~~ 266 (320)
-..+-....+++ ++.|+ ..+..+|.+ +. -.|.++|++.++- .+-+..++..+...+.+.
T Consensus 163 ---A~~lG~AlQltN-ilRDv---~eD~~~gR~YLP~---d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a 232 (293)
T 3acx_A 163 ---ARRLGESLQLIN-ILRDV---GEDFENERIYFSK---QRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDV 232 (293)
T ss_dssp ---HHHHHHHHHHHH-HHHCH---HHHHHTTCCCSCH---HHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH-HHHHH---HHHHhCCcEEeCH---HHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222 34454 334455654 33 2456789987762 233445555555544433
Q ss_pred hcCCCCCCHHHHHHH
Q 043754 267 LMRPPVVPMPLLERV 281 (320)
Q Consensus 267 ~~~~~~~p~~~~~~~ 281 (320)
.-.-..+|...+-.+
T Consensus 233 ~~~~~~lp~~~r~~~ 247 (293)
T 3acx_A 233 MDQIKVFSIEAQPII 247 (293)
T ss_dssp HHTGGGSCTTHHHHH
T ss_pred HHhHHhCCHHHHHHH
Confidence 222235666544433
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=86.72 E-value=11 Score=34.15 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=57.9
Q ss_pred ccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHH
Q 043754 131 YGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQAS 208 (320)
Q Consensus 131 ~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~ 208 (320)
.+...+.++....+.|-..+..|.. ...||.++|+..-..-+|..+..+.-. ...| .+++..+. ...+-+..
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4566778888889999888888754 335899999998887777665433211 1122 35544443 36677778
Q ss_pred HhHHHHhcCccchH
Q 043754 209 SIICRLMDDIVSHK 222 (320)
Q Consensus 209 ~~i~rL~NDi~S~~ 222 (320)
+...-+.||+..+.
T Consensus 207 G~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 207 GICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccCC
Confidence 88888889888775
No 21
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=85.91 E-value=9.1 Score=34.57 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhc--CCCCCCHHHHhhccCchHHHHHHHhHHHHhcCc
Q 043754 141 KILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLG--MEDIVTKEAFEWVSGNPKIVQASSIICRLMDDI 218 (320)
Q Consensus 141 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 218 (320)
...+.|-..+..|.. ..||.++|+..-..-+|..+..+. ..+ ++...+++..+. ..++-+..++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRASV-RLACLARPGLPAEQFDR---LDHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHHH-HHHHTTSTTCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 346677666666654 378999999886555555443222 222 122245554443 356677778888888888
Q ss_pred cchHHh-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 043754 219 VSHKFE-----------QQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDIN 264 (320)
Q Consensus 219 ~S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~ 264 (320)
..+.-+ ...|.. +.+.+| ..+.|.+.+.+.++++.+.|.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 776432 222332 454444 478888888888888776654
No 22
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=85.44 E-value=19 Score=31.81 Aligned_cols=169 Identities=14% Similarity=0.185 Sum_probs=84.6
Q ss_pred hhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC--HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHH
Q 043754 40 EGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT--IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAY 117 (320)
Q Consensus 40 ~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t--~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~ 117 (320)
++|+++.- .. |. ..|-.+.-+-.+.=.+||+-|.... ...++.+-+.+++- ...-|. .+++.+|..++
T Consensus 27 ~sF~~a~~-~l-p~--~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~----~~g~~~--~pv~~al~~~~ 96 (294)
T 4hd1_A 27 ENFSVVSL-FV-PR--HLRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRA----FAGEAT--TPAFRALQFTI 96 (294)
T ss_dssp TTHHHHTT-TC-CT--TTHHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHH----HHTCCC--SHHHHHHHHHH
T ss_pred CcHHHHHH-HC-CH--HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH----hcCCCC--CHHHHHHHHHH
Confidence 34555443 33 42 2444444555666779999997532 23344444444321 111122 26777777766
Q ss_pred HHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhh
Q 043754 118 SEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEW 197 (320)
Q Consensus 118 ~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~ 197 (320)
.+.. -. ++.+.+++.++..... ....+|++|+..+...+.|+--.+++..++. . +++....
T Consensus 97 ~~~~--------l~-----~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~--~-~~~~~~~ 157 (294)
T 4hd1_A 97 ATCN--------LP-----MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIFGC--L-DDERARL 157 (294)
T ss_dssp HHHT--------CC-----SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHTTC--C-SHHHHHH
T ss_pred HHcC--------CC-----HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHhCC--C-CHHHHHH
Confidence 5541 11 2345667777654433 3456898888777777666554444444432 2 2232221
Q ss_pred ccCchHHHHHHHhHHHHhcCccchHHhhhcCCc--chhHHHHHhhCCCCHHH
Q 043754 198 VSGNPKIVQASSIICRLMDDIVSHKFEQQRGHV--ASAVECYMKQHGVSEEE 247 (320)
Q Consensus 198 ~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~--~n~V~~ym~e~g~s~ee 247 (320)
-...+...-|.|=+.....+..+|.+ +. -.|.++|+|.++
T Consensus 158 -------A~~lG~AlQltNilRDv~eD~~~gR~YlP~---~~l~~~gv~~~d 199 (294)
T 4hd1_A 158 -------SDATCTALQVANHMQDIDRDLALGRIYVPR---ADLEQFGATLDD 199 (294)
T ss_dssp -------HHHHHHHHHHHHHHHTHHHHHHTTCBCSCH---HHHHTTTCCHHH
T ss_pred -------HHHHHHHHHHHHHHHhchhhhccCceeCCH---HHHHHcCCCHHH
Confidence 11122222233322333344556654 33 356788998875
No 23
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=85.10 E-value=7.8 Score=34.68 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhc--CCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccc
Q 043754 143 LVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLG--MEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVS 220 (320)
Q Consensus 143 ~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 220 (320)
.+.|-..+..|... .||.++|+..-..-+|..+..+. ..+ ++...+++..+. ..++-+..++..-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~-~~ga~lag~~~~~~~~~---l~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASV-ILGALASGRAEKGELKA---LQTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 56666666666543 58999999886555554433222 222 122225554443 36677788888889999988
Q ss_pred hHHhh-hcCC-----c----chhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhh
Q 043754 221 HKFEQ-QRGH-----V----ASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDV 290 (320)
Q Consensus 221 ~~~E~-~~g~-----~----~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r~~~~ 290 (320)
+.-+. ..|+ . .+.+.+| ..+.|.+.+.+.++++.+.|. .+|.. ++....++..+
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~-------~l~~~-~~~L~~l~~~~-- 291 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR-------PFDAA-AEPLRELARYI-- 291 (304)
T ss_dssp HHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT-------TSCGG-GHHHHHHHHHH--
T ss_pred ccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH-------hCchh-HHHHHHHHHHH--
Confidence 75432 1222 1 1444443 468888888888888887765 35642 45555666544
Q ss_pred hcccCCCC
Q 043754 291 LYQNNDSY 298 (320)
Q Consensus 291 ~Y~~~D~~ 298 (320)
......|+
T Consensus 292 ~~R~~~~~ 299 (304)
T 3lsn_A 292 VERRSEGH 299 (304)
T ss_dssp HC------
T ss_pred HHhccccc
Confidence 44444443
No 24
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=84.88 E-value=5.2 Score=35.71 Aligned_cols=110 Identities=13% Similarity=0.066 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHH--HHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCc
Q 043754 141 KILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS--SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDI 218 (320)
Q Consensus 141 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~--~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 218 (320)
...+.|-..+..|...+..||.++|+..-..-+|..+..+. .-+..| .+++ ...++-+..++..-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG------PLTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHHH
Confidence 45677777788887657789999999876655555433222 111113 2222 1255677788888899999
Q ss_pred cchHHhh-----------hcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 219 VSHKFEQ-----------QRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 219 ~S~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
..+.-+. ..|.. +.+.++ ..+.|.+...+.++++.+.|..
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKA-TFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp C---------------------C-CHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 12222 444333 3567888888888888877763
No 25
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=83.96 E-value=23 Score=32.10 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=57.6
Q ss_pred ccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHH
Q 043754 131 YGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQAS 208 (320)
Q Consensus 131 ~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~ 208 (320)
.+...+.++....+.|-..+..|.. +..||.++|+..-..-+|..+..+.-. ...| .+++..+. ..++-+..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSAG--VDVAKSEA---LRDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4566777888888899888887754 335899999988777776654333211 1122 35554443 36677788
Q ss_pred HhHHHHhcCccchHH
Q 043754 209 SIICRLMDDIVSHKF 223 (320)
Q Consensus 209 ~~i~rL~NDi~S~~~ 223 (320)
++..-+.||+..+.-
T Consensus 225 G~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 225 GLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 888888899888753
No 26
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=82.95 E-value=27 Score=31.62 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=56.6
Q ss_pred ccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHH
Q 043754 131 YGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQAS 208 (320)
Q Consensus 131 ~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~ 208 (320)
.+...+.++....+.+-..+..|.. +..||.++|+..-..-+|..+..+.-. ...| .+++..+. ..++-+..
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGG--APEDQVQA---LFDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 3466677788888999888888864 346899999987777666654332211 1122 34544433 35667777
Q ss_pred HhHHHHhcCccchH
Q 043754 209 SIICRLMDDIVSHK 222 (320)
Q Consensus 209 ~~i~rL~NDi~S~~ 222 (320)
++..-+.||+..+.
T Consensus 213 G~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 213 GIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888887764
No 27
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=82.19 E-value=17 Score=32.40 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCc
Q 043754 141 KILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDI 218 (320)
Q Consensus 141 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 218 (320)
...+.+-..+..|... .+|.++|+..-..-+|..+..+... +..| .+++..+. ..++-...++..-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEH---LESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4466777777776543 7899999998777666654332211 1113 45555443 366777888888999999
Q ss_pred cchHHhh-----------hcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 219 VSHKFEQ-----------QRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 219 ~S~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
..+.-+. ..|.. +...++- .+.|.+.+.+.++.+.+.|..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 22222 4444443 567888888888888877764
No 28
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=81.01 E-value=21 Score=31.51 Aligned_cols=120 Identities=11% Similarity=0.031 Sum_probs=78.2
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQASS 209 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~ 209 (320)
....+.++....+.|-..+..|......||.++|+..-..-+|..+..+... ...|. +++ . ..++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~--~~~---~---l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGX--DHT---X---MXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCH---H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--Chh---H---HHHHHHHHH
Confidence 4566677778888998888888765547899999998777666554332211 11232 222 1 255677778
Q ss_pred hHHHHhcCccchHHhh-hcCC-----c--chhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 210 IICRLMDDIVSHKFEQ-QRGH-----V--ASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 210 ~i~rL~NDi~S~~~E~-~~g~-----~--~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
+..-+.||+..+.-+. ..|+ . .+...++ ..+.|.+.+.+.++.+.+.|..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888899998886542 2232 1 2333333 3678888899999999888875
No 29
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=80.76 E-value=11 Score=33.58 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhc--CCCCCCHHHHhhccCchHHHHHHHhHHHHhcCcc
Q 043754 142 ILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLG--MEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIV 219 (320)
Q Consensus 142 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 219 (320)
..+.|-..+..|. +..||.++|...-..-+|..+..+. ..+ ++ ..+++..+. ..++-+..++..-+.||+.
T Consensus 157 ~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~~~-~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDil 229 (302)
T 3p8l_A 157 GMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGALIEFAL-IAGGVLA-NQTEEVIGL---LTQFAHHYGLAFQIRDDLL 229 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4556666666664 3478999999875544454433222 221 12 234554443 3666777788888888887
Q ss_pred chHHh-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 220 SHKFE-----------QQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 220 S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
.+.-+ ...|.. +...++ ..+.|.+.+.+.++++.+.+..
T Consensus 230 D~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 230 DATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 76432 222332 444333 4788899999999999888775
No 30
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=80.74 E-value=7 Score=34.92 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhc--CCCCCCHHHHhhccCchHHHHHHHhHHHHhcCcc
Q 043754 142 ILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLG--MEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIV 219 (320)
Q Consensus 142 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 219 (320)
..+.|-..+..|. +..||.++|+..-..-+|..+..+. ..+ ++...+++..+. ..++-+..+...-+.||+.
T Consensus 159 ~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~~-~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDil 232 (302)
T 3p8r_A 159 GMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCAI-RLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDIL 232 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4667777777775 4578999999886555555433222 222 111122322222 3556677777888888887
Q ss_pred chHHh-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 220 SHKFE-----------QQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 220 S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
.+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.|..
T Consensus 233 D~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 233 DIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 76432 122332 444444 3677888888888888877763
No 31
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=80.27 E-value=19 Score=32.62 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=57.8
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQASS 209 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~ 209 (320)
+...+.++....+.|-..+..|.... ..|.++|++.-..-+|..+..+... ...| .+++..+. ..++-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKA---LSSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 35566777788889988888887643 4599999998877776655433221 1113 35554443 366777888
Q ss_pred hHHHHhcCccchH
Q 043754 210 IICRLMDDIVSHK 222 (320)
Q Consensus 210 ~i~rL~NDi~S~~ 222 (320)
...-+.||+..+.
T Consensus 212 ~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 212 IAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888889988774
No 32
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=78.49 E-value=15 Score=32.95 Aligned_cols=112 Identities=12% Similarity=0.088 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhcCCCC-CCHHHHhhccCchHHHHHHHhHHHHhcCccc
Q 043754 142 ILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDI-VTKEAFEWVSGNPKIVQASSIICRLMDDIVS 220 (320)
Q Consensus 142 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~-l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 220 (320)
..+.|-..+..|... ..||.++|...-..-+|..+..+.....++.. .+++..+. ..++-+..++..-+.||+..
T Consensus 159 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~---l~~~g~~lGlaFQI~DDilD 234 (313)
T 3lom_A 159 GMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSA---LRTYGKHIGLVFQMQDDYLD 234 (313)
T ss_dssp THHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 456676666676532 37899999988655555443333222222322 55655443 36677777888888888887
Q ss_pred hHHh-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 043754 221 HKFE-----------QQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDIN 264 (320)
Q Consensus 221 ~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~ 264 (320)
+.-+ ...|.. +.+.+| ..+.|.+.+.+.++++.+.|.
T Consensus 235 ~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 235 LYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7432 122322 443332 478888888888888876665
No 33
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=77.64 E-value=13 Score=33.50 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhc--CCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccc
Q 043754 143 LVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLG--MEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVS 220 (320)
Q Consensus 143 ~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 220 (320)
.+.|-..+..|. +..||.++|+..-..-+|.-+..+. ..+ ++...+++..+. ..++-+..++..-+.||+..
T Consensus 153 m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDiLD 226 (317)
T 4f62_A 153 MITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKASV-RMGALSTGQVKPEQLAK---LDAYAHAIGLAFQVQDDIID 226 (317)
T ss_dssp HHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 566666666665 3459999999886555554433222 222 122245554443 35667777888888898887
Q ss_pred hHHh-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 221 HKFE-----------QQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 221 ~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.|..
T Consensus 227 ~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 227 LTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp TC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7432 222332 555444 3678888888989988887764
No 34
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=76.51 E-value=43 Score=30.13 Aligned_cols=102 Identities=11% Similarity=0.023 Sum_probs=60.9
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHH--HhcCCCCCCHHHHhhccCchHHHHHHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSS--FLGMEDIVTKEAFEWVSGNPKIVQASS 209 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~--~~~~g~~l~~e~~~~~~~~~~l~~~~~ 209 (320)
....+.+.....+.+-+.+..|.. ...||.++|++.-..-+|..+..+.. -...| .+++..+. ...+-+..+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSCYQGAQLAG--APQSVIDR---TRDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 455667777888888777777643 34689999998766666655432221 11122 35554443 355666667
Q ss_pred hHHHHhcCccchHH-----------hhhcCCcchhHHHHHhh
Q 043754 210 IICRLMDDIVSHKF-----------EQQRGHVASAVECYMKQ 240 (320)
Q Consensus 210 ~i~rL~NDi~S~~~-----------E~~~g~~~n~V~~ym~e 240 (320)
...-+.||+..+.- +...|.. +...+|..+
T Consensus 218 ~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 218 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 77777777766532 3344554 555556554
No 35
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=76.42 E-value=14 Score=33.47 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCc
Q 043754 141 KILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDI 218 (320)
Q Consensus 141 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 218 (320)
...+.|-..+..|... .+|.++|+..-..-+|..+..+... +..| .+++..+. ..++-+..++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567777777777654 7899999998877777654332211 1123 45554443 366777788888888988
Q ss_pred cchHHhh-----------hcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 219 VSHKFEQ-----------QRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 219 ~S~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
..+.-+. ..|.. +...+| ..+.|.+.+.+.++.+.+.|..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8774321 22322 444433 2678888888888888877764
No 36
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=74.57 E-value=20 Score=32.71 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=56.5
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhh----------CCC-CCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhc
Q 043754 132 GLPFAKESMKILVRSYIIEARWCD----------QQY-VPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWV 198 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~----------~~~-~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~ 198 (320)
+...+.++....+.|-..+..|.. .+. .||.++|+..-..-+|..+..++-. ...| .+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVS--DDRGLAEA- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH-
Confidence 456777888889999888888872 223 6799999998777666654433211 1112 34544433
Q ss_pred cCchHHHHHHHhHHHHhcCccchH
Q 043754 199 SGNPKIVQASSIICRLMDDIVSHK 222 (320)
Q Consensus 199 ~~~~~l~~~~~~i~rL~NDi~S~~ 222 (320)
..++-+..++..-+.||+..+.
T Consensus 210 --l~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 210 --AWNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777777888888887764
No 37
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=70.87 E-value=24 Score=31.72 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhc--CCCCCCHHHHhhccCchHHHHHHHhHHHHhcCcc
Q 043754 142 ILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLG--MEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIV 219 (320)
Q Consensus 142 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 219 (320)
..+.|-..+..|... ..||.++|...-..-+|..+..+. ..+ ++ ..+++..+. ..++-+..++..-+.||+.
T Consensus 181 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~-~~Ga~la-ga~~~~~~~---l~~~g~~lGlAFQI~DDiL 254 (324)
T 3uca_A 181 GMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASI-MSGAVLA-EASEGDIKK---LEGFGYKLGLAFQIKDDIL 254 (324)
T ss_dssp THHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 466777777776543 268999999885554554433222 221 12 234554443 3666777788888888887
Q ss_pred chHHh-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 220 SHKFE-----------QQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 220 S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
.+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 255 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 255 DVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 76322 222322 444333 4688899999999999888764
No 38
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=70.58 E-value=48 Score=29.21 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhcC--CCCCCHHHHhhccCchHHHHHHHhHHHHhcC
Q 043754 140 MKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGM--EDIVTKEAFEWVSGNPKIVQASSIICRLMDD 217 (320)
Q Consensus 140 w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 217 (320)
....+.+-..+..|. +..||.++|...-..-+|..+..+. ..+. + ..+++..+. ..++-+..++..-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAAL-KMGCEIC-ELNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 444566666666664 3568999999886555555443322 2221 1 235554433 36677777888888899
Q ss_pred ccchHHhh-hcCCcc-------hhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 043754 218 IVSHKFEQ-QRGHVA-------SAVECYMKQHGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLAR 286 (320)
Q Consensus 218 i~S~~~E~-~~g~~~-------n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r 286 (320)
+..+.-+. ..|+.. +.+.++ ..+.|.+..+++++++.+.+. .+|....+..-.+++
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~-------~~~~~~~~~l~~la~ 280 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE-------KLNEKLAQMIQNLII 280 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH-------TSCHHHHHHHHHHHH
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH-------HhchhHHHHHHHHHH
Confidence 88775432 223221 333222 367778888888888887776 366543444444443
No 39
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=68.19 E-value=32 Score=31.12 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=53.9
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHH--HHhcCCCCCCHHHHhhccCchHHHHHHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS--SFLGMEDIVTKEAFEWVSGNPKIVQASS 209 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~--~~~~~g~~l~~e~~~~~~~~~~l~~~~~ 209 (320)
+...+.++....+.|-..+..|.. ...+|.++|+..-..-+|..+..+. .-...| .+++..+. ..++-+..+
T Consensus 154 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 227 (348)
T 3apz_A 154 VVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVL---AFEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHH---HHHHHHHHH
Confidence 456667777888888777765543 1357999999886666665543322 112223 34554443 355667778
Q ss_pred hHHHHhcCccchHH
Q 043754 210 IICRLMDDIVSHKF 223 (320)
Q Consensus 210 ~i~rL~NDi~S~~~ 223 (320)
+..-+.||+..+.-
T Consensus 228 ~aFQi~DD~lD~~g 241 (348)
T 3apz_A 228 LAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccC
Confidence 88888888887754
No 40
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=66.73 E-value=33 Score=30.58 Aligned_cols=110 Identities=8% Similarity=0.012 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHH--HhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCcc
Q 043754 142 ILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSS--FLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIV 219 (320)
Q Consensus 142 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~--~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 219 (320)
..+.|-..+..|. +..||.++|...-..-+|..+..+.. -+..| .+++..+. ..++-+..++..-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ--APEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3556666666664 34689999998865555544332221 11123 24433332 3556677778888888887
Q ss_pred chHHh-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 220 SHKFE-----------QQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 220 S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
.+.-+ ...|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 76432 222332 444433 3567888888888888877763
No 41
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=65.46 E-value=42 Score=29.69 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhc--C-CCCCCHHHHhhccCchHHHHHHHhHHHHhcC
Q 043754 141 KILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLG--M-EDIVTKEAFEWVSGNPKIVQASSIICRLMDD 217 (320)
Q Consensus 141 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 217 (320)
...+.|-..+..|... .+|.++|+..-..-+|..+..+. ..+ + + ..+++..+. ..++-+..++..-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~-~~ga~l~a-g~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAV-RLGALSAG-DKGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTT-HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHhC-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3456777777777543 78999999987666665543222 221 1 1 123443333 36667777888888999
Q ss_pred ccchHHhh-----------hcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 218 IVSHKFEQ-----------QRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 218 i~S~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
+..+.-+. ..|.. +...+| ..+.|.+.+++.++.+.+.|..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCC-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88775332 22332 444333 2467888888888888888775
No 42
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=64.36 E-value=39 Score=30.70 Aligned_cols=86 Identities=13% Similarity=0.075 Sum_probs=57.8
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhcC-CCCCCHHHHhhccCchHHHHHHHh
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGM-EDIVTKEAFEWVSGNPKIVQASSI 210 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~ 210 (320)
+...+.++....+.+-..+..|... ..||.++|+..-..-+|..+..++ ..++ --..+++..+. ...+-+..++
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~---l~~~g~~lG~ 218 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACAS-SIGAVLGGADERTADT---LEKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 3566777888899998888888654 368999999887776766654332 2221 01235554443 3667777788
Q ss_pred HHHHhcCccchH
Q 043754 211 ICRLMDDIVSHK 222 (320)
Q Consensus 211 i~rL~NDi~S~~ 222 (320)
..-+.||+..+-
T Consensus 219 aFQi~DD~ld~~ 230 (352)
T 3nf2_A 219 AFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 888888887764
No 43
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=61.51 E-value=24 Score=31.53 Aligned_cols=112 Identities=11% Similarity=0.165 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHH-hhccCchHHHHHHHhHHHHhcC
Q 043754 141 KILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAF-EWVSGNPKIVQASSIICRLMDD 217 (320)
Q Consensus 141 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~-~~~~~~~~l~~~~~~i~rL~ND 217 (320)
...+.|-..+..|. +..||.++|+..-..-+|..+..+... +..| .+++.. +. ..++-+..++..-+.||
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~---l~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKW---LQAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 44566766666665 567899999988665555543322211 1113 233333 33 35677778888888899
Q ss_pred ccchHHh-hhcCCcchhHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHH
Q 043754 218 IVSHKFE-QQRGHVASAVECYMKQHGV------SEEEAVKVFREKVGNAWKDIN 264 (320)
Q Consensus 218 i~S~~~E-~~~g~~~n~V~~ym~e~g~------s~eeA~~~i~~~i~~~~k~l~ 264 (320)
+..+.-+ ..-|+.... ++... ..+.|.+..+++++++.+.+.
T Consensus 232 iLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9887543 223332211 12222 357788888888888887766
No 44
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=61.20 E-value=91 Score=27.83 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=54.5
Q ss_pred cHhhHHHHHHHHHHHHHHHHHH-hhCCCCCChHHHHhhhhhhhhhh-HHHHH--HHhcCCCCCCHHHHhhccCchHHHHH
Q 043754 132 GLPFAKESMKILVRSYIIEARW-CDQQYVPTMEEYMRVALLSCGYL-LLSTS--SFLGMEDIVTKEAFEWVSGNPKIVQA 207 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w-~~~~~~Pt~eEYl~~~~~s~g~~-~~~~~--~~~~~g~~l~~e~~~~~~~~~~l~~~ 207 (320)
+...+.++....+.|-..+..| ...+..||.++|++.-..-+|.. +..+. .-...|. +++.. ..++-..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHHH
Confidence 4566777888899999999998 65435689999998887766655 33222 2222232 22211 3556666
Q ss_pred HHhHHHHhcCccchH
Q 043754 208 SSIICRLMDDIVSHK 222 (320)
Q Consensus 208 ~~~i~rL~NDi~S~~ 222 (320)
.+...-+.||+..+.
T Consensus 204 lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCccc
Confidence 777777777777664
No 45
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=57.13 E-value=12 Score=33.25 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhCC-CCCChHHHHhhhhhhhhhhHHHHH--HHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCcc
Q 043754 143 LVRSYIIEARWCDQQ-YVPTMEEYMRVALLSCGYLLLSTS--SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIV 219 (320)
Q Consensus 143 ~~~~~~~Ea~w~~~~-~~Pt~eEYl~~~~~s~g~~~~~~~--~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 219 (320)
.+.|-..+..|...+ ..+|.++|+..-..-+|..+..+. .-...| .+++..+. ..++-...++..-+.||+.
T Consensus 162 ~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDiL 236 (293)
T 2j1p_A 162 LVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG--GSDEEIER---LRKFARCIGLLFQVVDDIL 236 (293)
T ss_dssp HHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 455655555554321 246889998875444444332221 112223 35554443 3667778888888999998
Q ss_pred chHHhhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043754 220 SHKFEQQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINE 265 (320)
Q Consensus 220 S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 265 (320)
.+..+. -.+...++ ..+.|.+.+.+.++.+.+.+..
T Consensus 237 D~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 237 DVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 876443 22444444 4677888888888888776653
No 46
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=49.76 E-value=91 Score=28.44 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=59.0
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCC----CCChHHHHhhhhhhhhhh-HH--HHHHHhcCCCCCCHHHHhhccCchHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQY----VPTMEEYMRVALLSCGYL-LL--STSSFLGMEDIVTKEAFEWVSGNPKI 204 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~----~Pt~eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~e~~~~~~~~~~l 204 (320)
+...+.+.....+.|-+.+..|...+. .+|+++|+..-..-+|.. +. +.+.-+..| ..+++..+. ..++
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~a~~~~~~~---l~~~ 252 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-IDGEKEHAN---AKKI 252 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-CCcHHHHHH---HHHH
Confidence 455667777888889888888876544 389999999888777665 32 222222223 134554443 3667
Q ss_pred HHHHHhHHHHhcCccchHH
Q 043754 205 VQASSIICRLMDDIVSHKF 223 (320)
Q Consensus 205 ~~~~~~i~rL~NDi~S~~~ 223 (320)
-...++..-+.||+..+.-
T Consensus 253 g~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 253 LLEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 7788888888899887743
No 47
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=49.25 E-value=79 Score=28.78 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=58.2
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCC----CCChHHHHhhhhhhhhhh-HH--HHHHHhcCCCCCCHHHHhhccCchHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQY----VPTMEEYMRVALLSCGYL-LL--STSSFLGMEDIVTKEAFEWVSGNPKI 204 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~----~Pt~eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~e~~~~~~~~~~l 204 (320)
+...+.+.....+.|-+.+..|...+. .+|.++|+..-..-+|.. +. +.+.-+..|. .+++..+. ..++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~~~~~~~~---l~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-DSKEEHEN---AKAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-CCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-ccHHHHHH---HHHH
Confidence 455667777888899888888876543 589999999887766665 22 2222222231 34454443 3667
Q ss_pred HHHHHhHHHHhcCccchHH
Q 043754 205 VQASSIICRLMDDIVSHKF 223 (320)
Q Consensus 205 ~~~~~~i~rL~NDi~S~~~ 223 (320)
-...+...-+.||+..+.-
T Consensus 246 g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7777888888888887753
No 48
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=45.99 E-value=1.4e+02 Score=26.20 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=57.5
Q ss_pred ccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHH
Q 043754 131 YGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQAS 208 (320)
Q Consensus 131 ~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~ 208 (320)
.....+.+.....+.|-..+..|......||.++|+..-..-+|..+..+... ...|. ++ ...++-+..
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~--~~-------~l~~~g~~l 181 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDY--KE-------DLKPLLNTL 181 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CS-------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCC--hH-------HHHHHHHHH
Confidence 34566788888999999999999876668999999998887777554333211 11222 21 235667777
Q ss_pred HhHHHHhcCccchH
Q 043754 209 SIICRLMDDIVSHK 222 (320)
Q Consensus 209 ~~i~rL~NDi~S~~ 222 (320)
+...-+.||+..+.
T Consensus 182 G~aFQi~DD~ld~~ 195 (301)
T 2q80_A 182 GLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 88888888887664
No 49
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=42.94 E-value=1.2e+02 Score=26.64 Aligned_cols=116 Identities=17% Similarity=0.095 Sum_probs=65.8
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhc-CCCCCCHHHHhhccCchHHHHHHHh
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLG-MEDIVTKEAFEWVSGNPKIVQASSI 210 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 210 (320)
....+.++....+.|-..+..+ .++|++.-..-+|..+..++..-+ ++ .+++..+. ..++-+..+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~---l~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQ---MLDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHH---HHHHHHHHHH
Confidence 3555666666677765544432 678888776666655433221111 13 34443332 3556677788
Q ss_pred HHHHhcCccchHHh----hhcCCcchhHHHHHhhCCCCHHHH-HHHHHHHHHHHHHHHH
Q 043754 211 ICRLMDDIVSHKFE----QQRGHVASAVECYMKQHGVSEEEA-VKVFREKVGNAWKDIN 264 (320)
Q Consensus 211 i~rL~NDi~S~~~E----~~~g~~~n~V~~ym~e~g~s~eeA-~~~i~~~i~~~~k~l~ 264 (320)
..-+.||+..+.-+ ...|. .+...+| . ..+.++| ...+.+.++.+.+.+.
T Consensus 203 aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~ 257 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELIS 257 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776432 12222 3666666 3 2346677 4456677777776665
No 50
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=42.25 E-value=54 Score=29.50 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=57.0
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCC--CCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQ--YVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQA 207 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~--~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~ 207 (320)
....+.+.....+.|-..+..|.... ..||.++|+..-..-+|..+..+... ...|. +++ . ....++-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPS--SHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC--cHH-H---HHHHHHHHH
Confidence 35556777788888988899998755 57899999998877776554333211 11232 221 1 234677888
Q ss_pred HHhHHHHhcCccchHH
Q 043754 208 SSIICRLMDDIVSHKF 223 (320)
Q Consensus 208 ~~~i~rL~NDi~S~~~ 223 (320)
.++..-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888999999887753
No 51
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=40.49 E-value=79 Score=28.15 Aligned_cols=86 Identities=9% Similarity=0.063 Sum_probs=58.0
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHH--hcCCCCCCHHHHhhccCchHHHHHHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSF--LGMEDIVTKEAFEWVSGNPKIVQASS 209 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~ 209 (320)
....+.++....+.|-..+..|... ..||.++|+..-..-+|..+..+... ...| .+++..+. ..++-...+
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 204 (325)
T 3aqb_B 131 FHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQ--LDEQSTYH---IKQFGHCIG 204 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 4566777778888888888887653 35899999998877776664333221 1123 35554443 366777778
Q ss_pred hHHHHhcCccchHH
Q 043754 210 IICRLMDDIVSHKF 223 (320)
Q Consensus 210 ~i~rL~NDi~S~~~ 223 (320)
...-+.||+..+.-
T Consensus 205 ~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 205 MSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 88888888887743
No 52
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=39.30 E-value=34 Score=29.86 Aligned_cols=69 Identities=10% Similarity=0.022 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhc--CCCCCCHHHHhhccCchHHHHHHHhHHHHhcCc
Q 043754 143 LVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLG--MEDIVTKEAFEWVSGNPKIVQASSIICRLMDDI 218 (320)
Q Consensus 143 ~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 218 (320)
.+.+-..+..|.. ..||.++|+..-..-+|..+..+. ..+ ++ ..+++..+. ..++-+..++..-+.||+
T Consensus 151 ~~~GQ~lDl~~~~--~~~t~~~y~~~i~~KTa~L~~~a~-~lGaila-ga~~~~~~~---l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVD--GNTSLDFIEYVCKKKYGEMHACGA-ACGAILG-GAAEEEIQK---LRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCT--TSSCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 4555555555543 378999999865555555443322 222 12 235554443 366777888888888996
No 53
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=39.16 E-value=2e+02 Score=25.38 Aligned_cols=82 Identities=9% Similarity=0.035 Sum_probs=53.0
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHH--HHhcCCCCCCHHHHhhccCchHHHHHHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS--SFLGMEDIVTKEAFEWVSGNPKIVQASS 209 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~--~~~~~g~~l~~e~~~~~~~~~~l~~~~~ 209 (320)
+...+.++....+.|-..+..|... ..||.++|+..-..-+|..+..+. .-...|.. .+ ....+-+..+
T Consensus 123 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~------~l~~~g~~lG 193 (315)
T 3tc1_A 123 IAQALSNAVLRLSRGEIEDVFVGEC-FNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AK------IYADFGLNFG 193 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HH------HHHHHHHHHH
Confidence 4566777788888998888888653 468999999876666665543322 11222333 21 1355667777
Q ss_pred hHHHHhcCccchH
Q 043754 210 IICRLMDDIVSHK 222 (320)
Q Consensus 210 ~i~rL~NDi~S~~ 222 (320)
+..-+.||+..+.
T Consensus 194 ~aFQI~DD~ld~~ 206 (315)
T 3tc1_A 194 MAFQIIDDLLDIT 206 (315)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccc
Confidence 7777888877663
No 54
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=38.83 E-value=76 Score=28.74 Aligned_cols=87 Identities=9% Similarity=0.030 Sum_probs=55.4
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHh-----------hCCC----CCChHHHHhhhhhhhhhh-HHH--HHHHhcCCCCCCHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWC-----------DQQY----VPTMEEYMRVALLSCGYL-LLS--TSSFLGMEDIVTKE 193 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~-----------~~~~----~Pt~eEYl~~~~~s~g~~-~~~--~~~~~~~g~~l~~e 193 (320)
+...+.+.....+.|-..+..|. ..+. .+|.++|+..-..-+|.. +.. ...-+..|. .+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~-~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEA-AASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTC-GGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCC-CCHH
Confidence 45666777788888888888887 3223 489999999887766665 322 222222231 2222
Q ss_pred HHhhccCchHHHHHHHhHHHHhcCccchH
Q 043754 194 AFEWVSGNPKIVQASSIICRLMDDIVSHK 222 (320)
Q Consensus 194 ~~~~~~~~~~l~~~~~~i~rL~NDi~S~~ 222 (320)
..+. ..++-...++..-+.||+..+.
T Consensus 231 ~~~~---l~~~g~~lG~aFQi~DD~lD~~ 256 (362)
T 1yhl_A 231 EMNL---VERVAHLIGEYFQVQDDVMDCF 256 (362)
T ss_dssp CHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 3556777788888888888775
No 55
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=34.44 E-value=36 Score=23.64 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 043754 241 HGVSEEEAVKVFREKVGNAWKDI 263 (320)
Q Consensus 241 ~g~s~eeA~~~i~~~i~~~~k~l 263 (320)
||++.+||+..+.+.+.+++.++
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999887643
No 56
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=30.48 E-value=3.1e+02 Score=24.86 Aligned_cols=86 Identities=10% Similarity=0.038 Sum_probs=53.8
Q ss_pred cHhhHHHHHHHHHHHHHHHHHHhhCCCCCCh-HHHHhhhhhhhhhh-H--HHHHHHhcCCCCCCHHH--HhhccCchHHH
Q 043754 132 GLPFAKESMKILVRSYIIEARWCDQQYVPTM-EEYMRVALLSCGYL-L--LSTSSFLGMEDIVTKEA--FEWVSGNPKIV 205 (320)
Q Consensus 132 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~-eEYl~~~~~s~g~~-~--~~~~~~~~~g~~l~~e~--~~~~~~~~~l~ 205 (320)
+...+.++....+.|-..+..|...+..+++ ++|+..-..-+|.. + .+.+.-+..|. +++. . ....++-
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~~~~---~~l~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSSAQL---NLIEAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCCSST---TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhHHHH---HHHHHHH
Confidence 3556777778888888888877766634555 99998876666654 2 22222233342 2221 1 2245667
Q ss_pred HHHHhHHHHhcCccchH
Q 043754 206 QASSIICRLMDDIVSHK 222 (320)
Q Consensus 206 ~~~~~i~rL~NDi~S~~ 222 (320)
...+...-+.||+..+-
T Consensus 244 ~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888888887764
No 57
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=27.50 E-value=41 Score=24.79 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=19.8
Q ss_pred chhHHHHHhhCCCCHHHHHHHHHH
Q 043754 231 ASAVECYMKQHGVSEEEAVKVFRE 254 (320)
Q Consensus 231 ~n~V~~ym~e~g~s~eeA~~~i~~ 254 (320)
.--|...|.+.|+|.++|++.+.+
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~ 89 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQE 89 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 356889999999999999887654
No 58
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=24.44 E-value=69 Score=22.36 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 043754 241 HGVSEEEAVKVFREKVGNAWK 261 (320)
Q Consensus 241 ~g~s~eeA~~~i~~~i~~~~k 261 (320)
||++.+||...+.+.+.++..
T Consensus 10 hG~~~~eA~~~l~~fl~~a~~ 30 (83)
T 2zqe_A 10 RGLTVAEALLEVDQALEEARA 30 (83)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999988774
No 59
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=22.93 E-value=1.2e+02 Score=26.56 Aligned_cols=83 Identities=18% Similarity=0.062 Sum_probs=53.5
Q ss_pred ccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHH--HhcCCCCCCHHHHhhccCchHHHHHH
Q 043754 131 YGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSS--FLGMEDIVTKEAFEWVSGNPKIVQAS 208 (320)
Q Consensus 131 ~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~--~~~~g~~l~~e~~~~~~~~~~l~~~~ 208 (320)
.....+.++....+.|-..+..|.... ||.++|+..-..-+|..+..+.. -...|..- +. ..++-...
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~--~~------l~~~g~~l 196 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGELG--ED------LYNLGVTI 196 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC--HH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH--HH------HHHHHHHH
Confidence 356677788889999999999987654 99999998887766665433221 11123221 21 24455666
Q ss_pred HhHHHHhcCccchHH
Q 043754 209 SIICRLMDDIVSHKF 223 (320)
Q Consensus 209 ~~i~rL~NDi~S~~~ 223 (320)
++..-+.||+..+.-
T Consensus 197 G~aFQi~DD~lD~~~ 211 (299)
T 1v4e_A 197 GTIYQMFDDIMDFAG 211 (299)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccC
Confidence 667777777766643
No 60
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=22.14 E-value=72 Score=23.17 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=23.4
Q ss_pred cCCcchhHHHHHhhCCCCHHHHHHHHHHH
Q 043754 227 RGHVASAVECYMKQHGVSEEEAVKVFREK 255 (320)
Q Consensus 227 ~g~~~n~V~~ym~e~g~s~eeA~~~i~~~ 255 (320)
.|.-.|+|..+|+-.|+|-.||++.+.+.
T Consensus 64 cg~gGd~i~fv~~~~~~sf~eA~~~La~~ 92 (103)
T 1d0q_A 64 CGAGGNAFTFLMDIEGIPFVEAAKRLAAK 92 (103)
T ss_dssp TCCEECHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 35556889999988899999999887764
No 61
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=21.93 E-value=2.1e+02 Score=26.02 Aligned_cols=76 Identities=8% Similarity=-0.035 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhh-HH--HHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcC
Q 043754 141 KILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYL-LL--STSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDD 217 (320)
Q Consensus 141 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 217 (320)
...+.+-..+..|...+ .||.++|+..-..-+|.. +. +...-...| .+++..+. ...+-+..++..-+.||
T Consensus 185 ~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag--a~~~~~~~---l~~~G~~lG~AFQI~DD 258 (380)
T 3lk5_A 185 TEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG--GSPQLIDA---LLHYGHDIGIAFQLRDD 258 (380)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45677777788887654 579999999876666654 22 122222223 34554443 36677788888888899
Q ss_pred ccchH
Q 043754 218 IVSHK 222 (320)
Q Consensus 218 i~S~~ 222 (320)
+..+-
T Consensus 259 iLd~~ 263 (380)
T 3lk5_A 259 LLGVF 263 (380)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 88764
No 62
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=21.92 E-value=72 Score=22.73 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 043754 241 HGVSEEEAVKVFREKVGNAWKD 262 (320)
Q Consensus 241 ~g~s~eeA~~~i~~~i~~~~k~ 262 (320)
||++.+||+..+...++++...
T Consensus 14 HGl~v~eA~~~L~~~L~~~~~~ 35 (96)
T 2d9i_A 14 HGLHVDEALEHLMRVLEKKTEE 35 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999887643
No 63
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=21.90 E-value=69 Score=29.18 Aligned_cols=88 Identities=13% Similarity=0.079 Sum_probs=52.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhCCCCC-ChHHHHhhhhhhhhhh---HHHHHHHhcCCCCCCHHHHhhccCchHHHHHH
Q 043754 133 LPFAKESMKILVRSYIIEARWCDQQYVP-TMEEYMRVALLSCGYL---LLSTSSFLGMEDIVTKEAFEWVSGNPKIVQAS 208 (320)
Q Consensus 133 ~~~l~~~w~~~~~~~~~Ea~w~~~~~~P-t~eEYl~~~~~s~g~~---~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~ 208 (320)
...+.++....+.|-..+..|...+..+ |.++|++.-..-+|.. ..+.......|...+++..+ ...++-...
T Consensus 170 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~---~l~~~g~~l 246 (368)
T 2q58_A 170 QKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLN---LIEAILYKL 246 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTT---THHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHH---HHHHHHHHH
Confidence 3444555556666766666776655554 7889998755544433 22333334445444444322 346677778
Q ss_pred HhHHHHhcCccchHH
Q 043754 209 SIICRLMDDIVSHKF 223 (320)
Q Consensus 209 ~~i~rL~NDi~S~~~ 223 (320)
++..-+.||+..+-.
T Consensus 247 G~aFQI~DDiLD~~~ 261 (368)
T 2q58_A 247 GEFYQVHNDVSDYLF 261 (368)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhccc
Confidence 888888899877643
No 64
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=21.56 E-value=4.3e+02 Score=23.49 Aligned_cols=201 Identities=11% Similarity=0.110 Sum_probs=91.9
Q ss_pred hHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccC-CHHH----HHHHHHHHHh--cchhhcccCchhHHHHHHHH
Q 043754 41 GYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYG-TIEE----LELFATAIER--WDLSAIDLLPEYIKLCYCAL 113 (320)
Q Consensus 41 ~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~-t~~e----l~~~~~ai~r--wd~~~~~~lp~~~~~~~~~l 113 (320)
+|+.+.- ...|+ .|-.+.-+-.+.=..||+-|... +.++ |+.|-+.+.. |... ..-|. .+.+...+
T Consensus 26 sF~la~~-lLp~~---~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~--~~~~~-~~~ll~~~ 98 (343)
T 3vj8_A 26 SFAAVIQ-ALDGE---MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFM--ESKEK-DRQVLEDF 98 (343)
T ss_dssp GGHHHHH-TCCTT---HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCC--CCCST-TTHHHHTH
T ss_pred cHHHHHH-hCCHH---HHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhc--CCChh-hHHHHhcC
Confidence 4554444 33343 55555566677788999999764 4444 3333333331 2111 11121 12222212
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHH
Q 043754 114 LDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKE 193 (320)
Q Consensus 114 ~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e 193 (320)
..+...+..- .. .....+.+....++.++.. +. ....+|++|+..+-..+.|+--.+++-.++....-++.
T Consensus 99 p~v~~~f~~l----~~-~~~~~i~~~~~~m~~gm~~---dl-~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~ 169 (343)
T 3vj8_A 99 PTISLEFRNL----AE-KYQTVIADICRRMGIGMAE---FL-DKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL 169 (343)
T ss_dssp HHHHHHHHHS----CH-HHHHHHHHHHHHHHHHHHH---GG-GCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH
T ss_pred cHHHHHHHHh----HH-HHHHHHHHHHHHHHHHHHH---hc-cCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch
Confidence 1122111100 00 0011223344455556532 22 25678988888777777766655555455432211111
Q ss_pred HHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCc--chhHHHHHhhCCCCHHH---------HHHHHHHHHHHHHHH
Q 043754 194 AFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHV--ASAVECYMKQHGVSEEE---------AVKVFREKVGNAWKD 262 (320)
Q Consensus 194 ~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~--~n~V~~ym~e~g~s~ee---------A~~~i~~~i~~~~k~ 262 (320)
.+. ........+...-+.|=|.....+..+|.+ +. -.|.++|++.++ +..-+..++..+..-
T Consensus 170 -~~~---~~~~A~~lG~AlQltNilRDv~eD~~~gR~YlP~---e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~ 242 (343)
T 3vj8_A 170 -VGE---DTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQ---EVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHH 242 (343)
T ss_dssp -HHH---CHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSCH---HHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTT
T ss_pred -hhh---HHHHHHHHHHHHHHHHHHHHhHHHHhCCCeeCCH---HHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 111 122333344444444444445555666654 33 246678887653 334455555555543
Q ss_pred HH
Q 043754 263 IN 264 (320)
Q Consensus 263 l~ 264 (320)
+.
T Consensus 243 ~~ 244 (343)
T 3vj8_A 243 IP 244 (343)
T ss_dssp HH
T ss_pred HH
Confidence 33
Done!