Query 043757
Match_columns 407
No_of_seqs 200 out of 1786
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 6.3E-76 1.4E-80 575.5 46.8 363 31-407 24-391 (394)
2 PLN02793 Probable polygalactur 100.0 1.1E-75 2.4E-80 582.6 49.2 366 31-407 49-422 (443)
3 PLN02218 polygalacturonase ADP 100.0 2.2E-75 4.9E-80 577.7 47.5 361 30-407 63-430 (431)
4 PLN02188 polygalacturonase/gly 100.0 7.8E-75 1.7E-79 570.2 43.1 364 32-407 34-403 (404)
5 PLN03003 Probable polygalactur 100.0 5.2E-74 1.1E-78 565.8 40.1 358 32-407 21-388 (456)
6 PLN03010 polygalacturonase 100.0 1E-72 2.2E-77 553.8 47.6 350 31-407 43-402 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 7E-57 1.5E-61 436.7 32.7 319 62-396 1-322 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 2.1E-40 4.6E-45 331.4 27.0 274 30-317 78-404 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 5.1E-26 1.1E-30 221.0 23.8 250 27-311 30-338 (455)
10 PLN02793 Probable polygalactur 99.9 8.2E-21 1.8E-25 189.7 30.4 218 90-346 143-397 (443)
11 PLN02188 polygalacturonase/gly 99.9 1.7E-20 3.7E-25 185.3 29.4 220 90-346 122-377 (404)
12 PLN02218 polygalacturonase ADP 99.9 1.4E-20 3E-25 187.2 28.0 237 68-345 132-410 (431)
13 PF12708 Pectate_lyase_3: Pect 99.9 7.3E-21 1.6E-25 175.0 20.9 212 34-285 1-224 (225)
14 PLN03003 Probable polygalactur 99.9 6.7E-20 1.5E-24 181.9 28.5 218 90-346 113-360 (456)
15 PLN02155 polygalacturonase 99.9 8.6E-20 1.9E-24 179.6 28.7 218 90-346 115-366 (394)
16 PF00295 Glyco_hydro_28: Glyco 99.9 7.4E-20 1.6E-24 177.8 25.9 217 90-345 60-310 (326)
17 PLN03010 polygalacturonase 99.9 1E-18 2.3E-23 172.3 29.6 215 90-346 139-377 (409)
18 PF03718 Glyco_hydro_49: Glyco 99.8 5E-18 1.1E-22 166.8 28.0 273 68-374 233-554 (582)
19 TIGR03805 beta_helix_1 paralle 99.7 6.7E-16 1.5E-20 148.9 23.0 195 54-309 1-201 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 4.6E-12 1E-16 128.0 16.4 154 179-346 237-398 (542)
21 PRK10123 wcaM putative colanic 99.3 3.1E-10 6.8E-15 103.8 16.6 311 5-374 4-349 (464)
22 TIGR03805 beta_helix_1 paralle 99.0 1.5E-07 3.3E-12 91.0 23.6 181 159-347 79-284 (314)
23 PF12541 DUF3737: Protein of u 98.8 1.7E-07 3.6E-12 85.5 14.5 94 187-314 135-228 (277)
24 PF13229 Beta_helix: Right han 98.7 1.6E-07 3.5E-12 80.7 12.5 140 159-318 2-145 (158)
25 TIGR03808 RR_plus_rpt_1 twin-a 98.6 1.8E-06 4E-11 85.2 17.2 146 159-318 108-291 (455)
26 PF03718 Glyco_hydro_49: Glyco 98.6 2.4E-06 5.3E-11 85.2 18.1 240 67-345 256-553 (582)
27 smart00656 Amb_all Amb_all dom 98.6 4.4E-06 9.5E-11 74.9 17.0 141 182-340 33-188 (190)
28 COG3866 PelB Pectate lyase [Ca 98.5 4.5E-06 9.7E-11 77.6 16.5 122 160-281 95-229 (345)
29 COG3866 PelB Pectate lyase [Ca 98.5 3.8E-06 8.2E-11 78.1 14.7 179 92-317 77-282 (345)
30 PF13229 Beta_helix: Right han 98.5 2.4E-06 5.3E-11 73.3 12.9 117 158-287 24-144 (158)
31 COG3420 NosD Nitrous oxidase a 98.5 3E-05 6.6E-10 73.1 20.6 89 160-250 101-192 (408)
32 PF07602 DUF1565: Protein of u 98.5 8.2E-06 1.8E-10 75.3 15.8 169 51-288 15-195 (246)
33 PF05048 NosD: Periplasmic cop 98.4 9.4E-06 2E-10 75.4 16.1 113 159-287 37-151 (236)
34 PF12541 DUF3737: Protein of u 98.4 5.2E-06 1.1E-10 75.9 13.6 99 162-287 133-231 (277)
35 PF05048 NosD: Periplasmic cop 98.4 1.7E-05 3.7E-10 73.7 16.1 135 159-317 15-151 (236)
36 PF14592 Chondroitinas_B: Chon 98.4 5.8E-05 1.3E-09 74.6 20.3 33 50-85 3-35 (425)
37 PLN02176 putative pectinestera 98.2 0.00076 1.6E-08 65.4 23.4 47 50-98 50-97 (340)
38 PLN02480 Probable pectinestera 98.2 0.00067 1.5E-08 66.0 22.4 79 162-249 128-216 (343)
39 PF12708 Pectate_lyase_3: Pect 98.2 0.0015 3.2E-08 59.6 23.7 123 168-315 94-224 (225)
40 PF00544 Pec_lyase_C: Pectate 98.1 1.3E-05 2.9E-10 72.5 9.4 94 187-281 44-158 (200)
41 smart00656 Amb_all Amb_all dom 98.0 0.00045 9.7E-09 62.0 16.5 133 160-310 34-188 (190)
42 PLN02497 probable pectinestera 98.0 0.0021 4.6E-08 62.1 21.7 47 50-98 43-90 (331)
43 PLN02634 probable pectinestera 97.9 0.0064 1.4E-07 59.3 23.4 47 50-98 67-114 (359)
44 PLN02682 pectinesterase family 97.9 0.0085 1.8E-07 58.8 24.3 48 49-98 80-128 (369)
45 PRK10531 acyl-CoA thioesterase 97.8 0.0055 1.2E-07 60.9 21.3 53 43-98 87-141 (422)
46 PLN02773 pectinesterase 97.8 0.011 2.3E-07 57.1 22.5 80 161-249 97-181 (317)
47 PLN02708 Probable pectinestera 97.8 0.003 6.4E-08 65.5 19.8 47 50-98 252-300 (553)
48 PLN02665 pectinesterase family 97.6 0.021 4.6E-07 56.1 22.2 47 50-98 79-126 (366)
49 PLN02170 probable pectinestera 97.6 0.013 2.7E-07 60.1 20.8 204 50-310 236-451 (529)
50 PLN02713 Probable pectinestera 97.5 0.0061 1.3E-07 63.3 18.1 207 50-310 261-488 (566)
51 PLN02916 pectinesterase family 97.5 0.015 3.3E-07 59.2 20.2 207 50-310 198-425 (502)
52 PF01095 Pectinesterase: Pecti 97.5 0.0053 1.1E-07 59.0 15.7 48 49-98 10-58 (298)
53 PLN02304 probable pectinestera 97.5 0.016 3.6E-07 56.9 19.1 47 50-98 86-133 (379)
54 PLN02201 probable pectinestera 97.5 0.019 4.1E-07 59.0 20.3 207 50-310 217-441 (520)
55 PLN02488 probable pectinestera 97.4 0.027 5.8E-07 57.3 20.8 207 49-310 207-432 (509)
56 PLN02990 Probable pectinestera 97.4 0.027 5.9E-07 58.7 21.4 210 50-310 270-495 (572)
57 PF00544 Pec_lyase_C: Pectate 97.4 0.0029 6.4E-08 57.2 12.5 119 160-288 39-188 (200)
58 PLN03043 Probable pectinestera 97.4 0.015 3.2E-07 60.2 18.3 207 50-310 234-461 (538)
59 PLN02995 Probable pectinestera 97.4 0.028 6.2E-07 58.1 20.4 210 50-311 234-461 (539)
60 PLN02506 putative pectinestera 97.3 0.017 3.6E-07 59.7 18.6 205 50-310 243-458 (537)
61 PLN02468 putative pectinestera 97.3 0.018 4E-07 59.9 18.9 207 50-310 269-489 (565)
62 PLN02933 Probable pectinestera 97.3 0.036 7.7E-07 57.1 20.5 208 50-310 229-453 (530)
63 PLN02484 probable pectinestera 97.3 0.024 5.1E-07 59.3 19.3 208 50-310 283-508 (587)
64 PLN02197 pectinesterase 97.3 0.027 5.8E-07 58.8 19.2 212 50-310 286-513 (588)
65 PLN02432 putative pectinestera 97.3 0.046 1E-06 52.2 19.3 47 50-98 22-69 (293)
66 PLN02301 pectinesterase/pectin 97.3 0.028 6.1E-07 58.2 19.1 207 50-310 247-471 (548)
67 PLN02416 probable pectinestera 97.3 0.018 4E-07 59.6 17.7 209 50-310 241-465 (541)
68 PLN02671 pectinesterase 97.2 0.055 1.2E-06 52.9 20.0 47 50-98 70-117 (359)
69 PLN02745 Putative pectinestera 97.2 0.039 8.5E-07 57.8 20.2 205 50-310 296-520 (596)
70 PF01696 Adeno_E1B_55K: Adenov 97.2 0.071 1.5E-06 52.3 20.5 155 36-254 45-204 (386)
71 PLN02217 probable pectinestera 97.2 0.038 8.2E-07 58.4 19.0 141 161-311 332-486 (670)
72 PLN02313 Pectinesterase/pectin 97.1 0.045 9.8E-07 57.3 18.8 209 50-310 286-510 (587)
73 PLN02314 pectinesterase 97.0 0.06 1.3E-06 56.4 19.1 208 50-311 289-509 (586)
74 COG4677 PemB Pectin methyleste 96.6 0.59 1.3E-05 44.6 20.3 48 49-98 92-141 (405)
75 PF12218 End_N_terminal: N ter 96.3 0.0049 1.1E-07 43.4 3.3 38 42-83 1-39 (67)
76 COG3420 NosD Nitrous oxidase a 96.0 0.18 3.9E-06 48.3 13.1 22 65-86 32-57 (408)
77 PF03211 Pectate_lyase: Pectat 95.9 0.47 1E-05 43.0 15.0 128 190-340 62-194 (215)
78 PF14592 Chondroitinas_B: Chon 95.2 0.5 1.1E-05 47.2 13.8 114 165-282 66-212 (425)
79 TIGR03804 para_beta_helix para 92.8 0.19 4.1E-06 33.3 3.9 38 184-226 3-40 (44)
80 TIGR03804 para_beta_helix para 92.8 0.13 2.9E-06 34.0 3.1 40 209-249 1-40 (44)
81 PLN02480 Probable pectinestera 92.2 3.2 7E-05 40.6 13.0 134 187-344 130-275 (343)
82 PF07602 DUF1565: Protein of u 91.5 2.3 5.1E-05 39.5 10.7 128 183-343 91-224 (246)
83 PF09251 PhageP22-tail: Salmon 91.4 4.9 0.00011 39.9 13.0 67 238-307 263-346 (549)
84 PF01696 Adeno_E1B_55K: Adenov 91.0 18 0.00038 35.9 18.8 87 185-286 117-205 (386)
85 PF03211 Pectate_lyase: Pectat 89.9 15 0.00033 33.4 15.8 135 163-305 58-194 (215)
86 PLN02217 probable pectinestera 89.3 5 0.00011 42.8 12.1 113 187-312 335-453 (670)
87 PLN02698 Probable pectinestera 88.1 8.2 0.00018 39.9 12.5 37 164-200 268-309 (497)
88 PLN02468 putative pectinestera 87.7 10 0.00022 39.8 13.2 114 186-312 342-461 (565)
89 PLN02314 pectinesterase 87.7 11 0.00024 39.8 13.4 114 186-312 362-481 (586)
90 PLN02995 Probable pectinestera 87.5 9.4 0.0002 39.8 12.6 114 186-312 309-428 (539)
91 PRK10531 acyl-CoA thioesterase 87.4 13 0.00028 37.4 13.0 86 215-311 237-336 (422)
92 PLN02197 pectinesterase 86.4 15 0.00033 38.7 13.5 114 186-312 361-481 (588)
93 PF09251 PhageP22-tail: Salmon 83.0 23 0.00049 35.4 12.0 81 215-311 263-367 (549)
94 PLN02773 pectinesterase 82.3 51 0.0011 32.0 14.4 113 186-312 99-213 (317)
95 PLN02698 Probable pectinestera 77.6 75 0.0016 32.9 14.5 115 186-312 267-386 (497)
96 PRK10123 wcaM putative colanic 77.3 12 0.00027 35.3 7.9 18 183-200 262-279 (464)
97 PF14262 DUF4353: Domain of un 76.2 65 0.0014 30.4 12.6 53 67-126 6-66 (264)
98 PLN02506 putative pectinestera 74.6 70 0.0015 33.5 13.5 114 185-311 315-434 (537)
99 PF08480 Disaggr_assoc: Disagg 73.9 26 0.00056 31.0 8.5 16 267-282 62-77 (198)
100 PLN02416 probable pectinestera 70.1 84 0.0018 32.9 12.8 114 186-312 314-433 (541)
101 PF08480 Disaggr_assoc: Disagg 69.7 81 0.0017 28.0 12.2 92 216-312 34-144 (198)
102 PLN02682 pectinesterase family 69.4 1.2E+02 0.0027 30.0 13.7 19 160-178 157-175 (369)
103 PLN02745 Putative pectinestera 69.3 1.1E+02 0.0024 32.5 13.6 114 186-312 369-488 (596)
104 PLN02665 pectinesterase family 69.1 1.3E+02 0.0027 30.0 13.9 81 160-249 148-238 (366)
105 PLN02634 probable pectinestera 68.8 1.3E+02 0.0027 29.9 13.1 15 164-178 147-161 (359)
106 PLN02176 putative pectinestera 67.8 1.3E+02 0.0028 29.6 13.2 77 164-249 120-207 (340)
107 PLN02170 probable pectinestera 67.5 1.3E+02 0.0029 31.3 13.5 115 185-312 309-428 (529)
108 PLN03043 Probable pectinestera 66.0 1.4E+02 0.003 31.4 13.4 116 185-312 309-429 (538)
109 PLN02713 Probable pectinestera 64.3 1.3E+02 0.0028 31.8 12.9 115 186-312 337-456 (566)
110 PLN02916 pectinesterase family 62.1 2E+02 0.0044 29.8 13.7 115 186-312 274-393 (502)
111 PLN02301 pectinesterase/pectin 61.1 1.7E+02 0.0036 30.8 13.0 114 186-312 320-439 (548)
112 PLN02671 pectinesterase 60.2 1.8E+02 0.004 28.7 12.9 18 161-178 149-166 (359)
113 PLN02497 probable pectinestera 57.1 2E+02 0.0043 28.2 12.9 16 163-178 112-127 (331)
114 PLN02313 Pectinesterase/pectin 55.6 2.1E+02 0.0045 30.4 12.7 114 186-312 359-478 (587)
115 PLN02201 probable pectinestera 55.5 2.7E+02 0.0058 29.1 13.9 115 186-312 290-409 (520)
116 PLN02990 Probable pectinestera 53.7 2.6E+02 0.0056 29.6 13.0 113 187-312 345-463 (572)
117 PLN02484 probable pectinestera 53.7 2.8E+02 0.0061 29.4 13.3 114 186-312 357-476 (587)
118 PF01095 Pectinesterase: Pecti 53.3 60 0.0013 31.2 7.7 17 162-178 83-99 (298)
119 PLN02488 probable pectinestera 53.0 2.9E+02 0.0062 28.8 13.6 113 187-312 282-400 (509)
120 PLN02432 putative pectinestera 52.7 2.2E+02 0.0048 27.3 14.5 16 163-178 91-106 (293)
121 PLN02933 Probable pectinestera 52.3 3E+02 0.0065 28.8 13.5 116 185-312 301-421 (530)
122 PLN02708 Probable pectinestera 51.2 2.6E+02 0.0057 29.4 12.6 80 161-249 325-409 (553)
123 PRK10802 peptidoglycan-associa 46.6 54 0.0012 28.8 5.8 14 67-80 68-81 (173)
124 KOG1777 Putative Zn-finger pro 44.2 3.6E+02 0.0078 27.4 12.7 29 65-97 46-74 (625)
125 PF07172 GRP: Glycine rich pro 43.2 23 0.00049 27.9 2.5 25 1-26 1-25 (95)
126 smart00710 PbH1 Parallel beta- 42.9 32 0.00069 18.6 2.6 11 217-227 3-13 (26)
127 smart00722 CASH Domain present 41.4 81 0.0017 25.7 6.0 68 163-233 73-144 (146)
128 PLN02304 probable pectinestera 40.1 3.9E+02 0.0085 26.7 13.9 16 163-178 159-174 (379)
129 PF05984 Cytomega_UL20A: Cytom 39.9 36 0.00079 25.8 3.0 13 27-39 22-34 (100)
130 PF10162 G8: G8 domain; Inter 38.2 1.1E+02 0.0023 25.2 6.0 55 66-132 11-65 (125)
131 PRK09752 adhesin; Provisional 37.4 7.1E+02 0.015 28.8 15.7 60 190-249 122-190 (1250)
132 COG4677 PemB Pectin methyleste 36.7 1.6E+02 0.0034 28.7 7.4 16 163-178 186-201 (405)
133 COG4704 Uncharacterized protei 31.6 2.2E+02 0.0049 23.8 6.6 32 48-83 59-95 (151)
134 PRK09752 adhesin; Provisional 27.3 1E+03 0.022 27.6 14.9 60 189-250 96-164 (1250)
135 COG4531 ZnuA ABC-type Zn2+ tra 26.4 89 0.0019 29.5 3.9 41 27-81 23-67 (318)
136 PF11429 Colicin_D: Colicin D; 25.4 57 0.0012 25.5 2.1 38 38-79 10-48 (92)
137 PF13956 Ibs_toxin: Toxin Ibs, 25.1 27 0.00059 18.4 0.2 13 11-23 5-17 (19)
138 PF15284 PAGK: Phage-encoded v 20.1 1E+02 0.0022 22.0 2.3 24 1-24 1-25 (61)
139 TIGR03656 IsdC heme uptake pro 20.1 2.7E+02 0.0059 25.4 5.7 45 27-79 26-70 (217)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=6.3e-76 Score=575.51 Aligned_cols=363 Identities=40% Similarity=0.749 Sum_probs=331.3
Q ss_pred CceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCC
Q 043757 31 YSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYA 110 (407)
Q Consensus 31 ~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~ 110 (407)
+++.+||+||||+|||.+|||+|||+|+++||+..+|++|+||+|+|++++|.|+|+|+|+++|+++|+|+++.+...|.
T Consensus 24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~G~l~~~~d~~~~~ 103 (394)
T PLN02155 24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKSKITFQVAGTVVAPEDYRTFG 103 (394)
T ss_pred CCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCCCceEEEeeEEECcccccccc
Confidence 46899999999999999999999999987789988899999999999999999999898999999999999888777675
Q ss_pred C-CceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEEEeeee
Q 043757 111 D-GDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQ 189 (407)
Q Consensus 111 ~-~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~ 189 (407)
. ..|+.+.+.+|+.|.| |+|||+|+.||.... ....+..+|++|.|.+|++++|++++++|||.|++++..|+
T Consensus 104 ~~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~-----~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~ 177 (394)
T PLN02155 104 NSGYWILFNKVNRFSLVG-GTFDARANGFWSCRK-----SGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCT 177 (394)
T ss_pred ccceeEEEECcCCCEEEc-cEEecCceeEEEccc-----CCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECee
Confidence 3 5799999999999999 999999999997531 22334457889999999999999999999999999999999
Q ss_pred eEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCCCceE
Q 043757 190 NFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVN 269 (407)
Q Consensus 190 nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~~~v~ 269 (407)
|++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||+|++...+.|+
T Consensus 178 nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~ 257 (394)
T PLN02155 178 NVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVE 257 (394)
T ss_pred eEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEE
Confidence 99999999999988999999999999999999999999999999999999999999999999999999998765568999
Q ss_pred EEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecCCeeEEEEeecCCCCC----CCCceEEEEEEEEeEEEEe
Q 043757 270 GITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKN----EPSRVKITDVHYKNIKGTS 345 (407)
Q Consensus 270 ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~----~~~~~~i~nI~~~nI~~~~ 345 (407)
||+|+||+|.++.+|++||+|.++++|.|+||+|+||+++++++||.|++.|++... ..+.+.|+||+|+||+++.
T Consensus 258 nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~ 337 (394)
T PLN02155 258 NVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTS 337 (394)
T ss_pred EEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEe
Confidence 999999999999999999998765579999999999999999999999999976432 2345799999999999998
Q ss_pred ccceeEEEEeCCCCceecEEEEeEEEEecCCCccccccCCCCceeeeeceecccceeCCCCC
Q 043757 346 ITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC 407 (407)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~p~~~ 407 (407)
....++++.|.+..||+||+|+||+++.+. + .+..+.|++++|.+.+++.|+||
T Consensus 338 ~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~-------~-~~~~~~C~n~~G~~~~~~~p~~c 391 (394)
T PLN02155 338 ATQEAMKLVCSKSSPCTGITLQDIKLTYNK-------G-TPATSFCFNAVGKSLGVIQPTSC 391 (394)
T ss_pred cCCceEEEEeCCCCCEEEEEEEeeEEEecC-------C-CccCcEEeccEeEEcccCCcccc
Confidence 767889999999999999999999999876 2 35688999999999999999999
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.1e-75 Score=582.56 Aligned_cols=366 Identities=39% Similarity=0.698 Sum_probs=332.4
Q ss_pred CceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCce-eeEeeeEeecCCCCceEEEEeeEEEEecCCcCC
Q 043757 31 YSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGT-FLTGPVVFSGPCKSAITVEVRGIVKATTDLKEY 109 (407)
Q Consensus 31 ~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~-Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~ 109 (407)
.+++++|+||||+|||.+|||+|||+|+++||+..+|++|+||+|. |++++|.|.++|+|+++|+++|+|+++.+..+|
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w 128 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVW 128 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHc
Confidence 3478999999999999999999999999878998889999999995 999999998888899999999999999998888
Q ss_pred CC---CceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEEEe
Q 043757 110 AD---GDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLV 186 (407)
Q Consensus 110 ~~---~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~ 186 (407)
+. ..||.+.+.+||+|+|.|+|||+|+.||..... ......+..||++|.|.+|+|++|++++++|+|.|++++.
T Consensus 129 ~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~--~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~ 206 (443)
T PLN02793 129 KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCK--INHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFT 206 (443)
T ss_pred cCCCCceEEEEecCceEEEEeceEEECCCccccccccc--ccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEE
Confidence 75 579999999999999999999999999974210 0011223458999999999999999999999999999999
Q ss_pred eeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCCC
Q 043757 187 FCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEM 266 (407)
Q Consensus 187 ~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~~ 266 (407)
.|+|++|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||+|++...+
T Consensus 207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~ 286 (443)
T PLN02793 207 NCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWS 286 (443)
T ss_pred ccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999887778
Q ss_pred ceEEEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecCCeeEEEEeecCCCCC----CCCceEEEEEEEEeEE
Q 043757 267 DVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKN----EPSRVKITDVHYKNIK 342 (407)
Q Consensus 267 ~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~----~~~~~~i~nI~~~nI~ 342 (407)
.|+||+|+||+|.++.+|++||+|.++ +|.|+||+|+||+++++.+||.|++.|++... .++.+.|+||+|+||+
T Consensus 287 ~V~nV~v~n~~~~~t~~GirIKt~~g~-~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~ 365 (443)
T PLN02793 287 EVRDITVDGAFLSNTDNGVRIKTWQGG-SGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIK 365 (443)
T ss_pred cEEEEEEEccEEeCCCceEEEEEeCCC-CEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEE
Confidence 899999999999999999999999875 69999999999999999999999999976332 2456899999999999
Q ss_pred EEeccceeEEEEeCCCCceecEEEEeEEEEecCCCccccccCCCCceeeeeceecccceeCCCCC
Q 043757 343 GTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC 407 (407)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~p~~~ 407 (407)
++.....++.+.|.+..||+||+|+||+++... ++ .....|++++|...+.+.|+||
T Consensus 366 Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~-------g~-~~~~~C~n~~g~~~~~~~p~~C 422 (443)
T PLN02793 366 GTSATEEAIKFACSDSSPCEGLYLEDVQLLSST-------GD-FTESFCWEAYGSSSGQVYPPPC 422 (443)
T ss_pred EEEcccccEEEEeCCCCCEeeEEEEeeEEEecC-------CC-CCCcEEEccEEeECCeEcCCcc
Confidence 998666789999999999999999999999876 32 4568899999999999999999
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2.2e-75 Score=577.73 Aligned_cols=361 Identities=40% Similarity=0.762 Sum_probs=327.5
Q ss_pred CCceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCc-eeeEeeeEeecCCCCceEEEEeeEEEEecCCcC
Q 043757 30 NYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSG-TFLTGPVVFSGPCKSAITVEVRGIVKATTDLKE 108 (407)
Q Consensus 30 ~~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G-~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~ 108 (407)
.++++++|+||||+|||.+|||+|||+|+++||+..++++|+||+| +|++++|.|+|+|+++++|+++|+|+++.+..+
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d~~~ 142 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQKRSD 142 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCChhh
Confidence 3568999999999999999999999999988999888899999999 699999999999999999999999999999888
Q ss_pred CCC-CceEEEEeeeceEEecC--eEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEEE
Q 043757 109 YAD-GDWILFENIDGLLLTGG--GTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILL 185 (407)
Q Consensus 109 ~~~-~~~i~~~~~~nv~I~G~--G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~ 185 (407)
|+. ..||.+.+.+||+|.|. |+|||+|+.||..... ......+..||++|.|.+|+|++|++++++|+|.|++++
T Consensus 143 y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~--~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~~ 220 (431)
T PLN02218 143 YKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCK--RNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISI 220 (431)
T ss_pred ccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccc--cCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEEE
Confidence 865 68999999999999997 9999999999975310 001122456899999999999999999999999999999
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDE 265 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~ 265 (407)
..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||++++...
T Consensus 221 ~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~~ 300 (431)
T PLN02218 221 EKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSK 300 (431)
T ss_pred EceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999887666
Q ss_pred CceEEEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecCCeeEEEEeecCCCCC---CCCceEEEEEEEEeEE
Q 043757 266 MDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKN---EPSRVKITDVHYKNIK 342 (407)
Q Consensus 266 ~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~---~~~~~~i~nI~~~nI~ 342 (407)
+.|+||+|+|+++.++.+|+|||+|.++ +|.|+||+|+||+++++.+||.|++.|++... .++.+.|+||+|+||+
T Consensus 301 ~~V~nV~v~n~~~~~t~nGvRIKT~~Gg-~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~ 379 (431)
T PLN02218 301 AFVSGVTVDGAKLSGTDNGVRIKTYQGG-SGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNIS 379 (431)
T ss_pred ceEEEEEEEccEEecCCcceEEeecCCC-CeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEE
Confidence 8999999999999999999999999874 79999999999999999999999999986432 3456899999999999
Q ss_pred EEeccceeEEEEeCCCCceecEEEEeEEEEecCCCccccccCCCCceeeeeceecccceeCCCCC
Q 043757 343 GTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC 407 (407)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~p~~~ 407 (407)
++.....++.+.|.++.||+||+|+||++.+.. ..|.||++...++++| +|
T Consensus 380 gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~~-------------~~c~n~~~~~~~~~~p-~c 430 (431)
T PLN02218 380 GTSASDVAITFNCSKNYPCQGIVLDNVNIKGGK-------------ATCTNANVVDKGAVSP-QC 430 (431)
T ss_pred EEecCCcEEEEEECCCCCEeeEEEEeEEEECCe-------------eeEEEeeEEEcccCCC-CC
Confidence 998767789999999999999999999998633 3799999999996555 77
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=7.8e-75 Score=570.21 Aligned_cols=364 Identities=52% Similarity=0.905 Sum_probs=327.2
Q ss_pred ceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCC
Q 043757 32 SLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYAD 111 (407)
Q Consensus 32 ~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~ 111 (407)
...+||+||||+|||.+|||+|||+|+++||++.||++|+||||+|++++|.|+++|++...|.+ +|+++.+..+|..
T Consensus 34 ~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~y~~ 111 (404)
T PLN02188 34 TFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF--TLKAATDLSRYGS 111 (404)
T ss_pred ceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE--EEEcCCCHHHCCC
Confidence 36899999999999999999999999988899888899999999999999999988854434444 8899999988874
Q ss_pred -CceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEEEeeeee
Q 043757 112 -GDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQN 190 (407)
Q Consensus 112 -~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~n 190 (407)
..|+.+..++||+|.|.|+|||+|+.||+... +.....+..||++|.|.+|+++.|+|++++|+|.|++++..|+|
T Consensus 112 ~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~---~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~ 188 (404)
T PLN02188 112 GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNK---CPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRN 188 (404)
T ss_pred ccceEEEeceeeEEEEeeEEEeCCCcccccccc---cccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEcccc
Confidence 57999998999999999999999999997532 11223445689999999999999999999999999999999999
Q ss_pred EEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCCCceEE
Q 043757 191 FTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNG 270 (407)
Q Consensus 191 v~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~~~v~n 270 (407)
++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+|+.|..+||++|||+|++++.+.|+|
T Consensus 189 v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~n 268 (404)
T PLN02188 189 FKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTG 268 (404)
T ss_pred EEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEE
Confidence 99999999999889999999999999999999999999999999999999999999999999999999998877789999
Q ss_pred EEEEeEEEeCCCeeEEEEEecCC-CCceEEeEEEEEEEEecCCeeEEEEeecCCCCC----CCCceEEEEEEEEeEEEEe
Q 043757 271 ITVFNCTLITTTNGLRIKTKRGS-ASLKASRIFYENIIMDKVKNPIIIDQNYGAKKN----EPSRVKITDVHYKNIKGTS 345 (407)
Q Consensus 271 i~i~n~~~~~~~~gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~----~~~~~~i~nI~~~nI~~~~ 345 (407)
|+|+||+|.++.+|++||+|.+. .+|.|+||+|+||+++++.+||.|++.|++... .++.+.|+||+|+||+++.
T Consensus 269 V~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~ 348 (404)
T PLN02188 269 LVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTS 348 (404)
T ss_pred EEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEe
Confidence 99999999999999999999753 358999999999999999999999999976432 2346899999999999998
Q ss_pred ccceeEEEEeCCCCceecEEEEeEEEEecCCCccccccCCCCceeeeeceecccceeCCCCC
Q 043757 346 ITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC 407 (407)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~p~~~ 407 (407)
....++.+.|.++.||+||+|+||+++.+. +..+..+.|++++|.+.++++|+||
T Consensus 349 ~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~-------g~~~~~~~C~nv~g~~~g~~~p~~C 403 (404)
T PLN02188 349 SSQVAVLLKCSRGVPCQGVYLQDVHLDLSS-------GEGGTSSSCENVRAKYIGTQIPPPC 403 (404)
T ss_pred cCceEEEEEECCCCCEeeEEEEeeEEEecC-------CCCCcCceeEcceeEEcccCcCCCC
Confidence 767789999999999999999999999875 2235578999999999999999999
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=5.2e-74 Score=565.80 Aligned_cols=358 Identities=37% Similarity=0.682 Sum_probs=324.5
Q ss_pred ceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCce-eeEeeeEeecCCCCc-eEEEEeeEEEEecCCcCC
Q 043757 32 SLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGT-FLTGPVVFSGPCKSA-ITVEVRGIVKATTDLKEY 109 (407)
Q Consensus 32 ~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~-Y~~~~l~l~~~~~s~-vtl~~~G~i~~~~~~~~~ 109 (407)
+..+||++|||+|||.+|||+|||+|+++||+..++++|+||+|. |++++|.|+++|++. +++.++|+|.++.. ..|
T Consensus 21 ~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~-~~w 99 (456)
T PLN03003 21 SNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-GNW 99 (456)
T ss_pred eeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-ccc
Confidence 567999999999999999999999999888988888999999995 889999999888664 78888999998654 345
Q ss_pred CC--CceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEEEee
Q 043757 110 AD--GDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVF 187 (407)
Q Consensus 110 ~~--~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~ 187 (407)
.. ..||.+.+++|++|.|.|+|||+|+.||... ..||++++|.+|+|++|+|++++|+|.|++++..
T Consensus 100 ~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~-----------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~ 168 (456)
T PLN03003 100 KGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK-----------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISE 168 (456)
T ss_pred cCCCcceEEEEcccceEEeccceEeCCchhhhhcc-----------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEec
Confidence 43 5799999999999999999999999999742 2489999999999999999999999999999999
Q ss_pred eeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCCCc
Q 043757 188 CQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMD 267 (407)
Q Consensus 188 ~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~~~ 267 (407)
|+|++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+|||+|||++++...+.
T Consensus 169 c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~ 248 (456)
T PLN03003 169 CNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETAT 248 (456)
T ss_pred cccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcce
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999998766678
Q ss_pred eEEEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecCCeeEEEEeecCCCCC------CCCceEEEEEEEEeE
Q 043757 268 VNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKN------EPSRVKITDVHYKNI 341 (407)
Q Consensus 268 v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~------~~~~~~i~nI~~~nI 341 (407)
|+||+|+||+|.++.+|++||+|.++ +|.|+||+|+||+++++.+||.|++.|++... .++.+.|+||+|+||
T Consensus 249 V~NV~v~n~~~~~T~nGvRIKT~~Gg-~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI 327 (456)
T PLN03003 249 VENVCVQNCNFRGTMNGARIKTWQGG-SGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNF 327 (456)
T ss_pred EEEEEEEeeEEECCCcEEEEEEeCCC-CeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeE
Confidence 99999999999999999999999975 69999999999999999999999999975321 345689999999999
Q ss_pred EEEeccceeEEEEeCCCCceecEEEEeEEEEecCCCccccccCCCCceeeeeceecccceeCCCCC
Q 043757 342 KGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC 407 (407)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~p~~~ 407 (407)
+++.....++.+.|++..||+||+|+||+++...+. ++.+..+.|+||+|.+.++.+|+||
T Consensus 328 ~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g-----~~~~~~~~C~Nv~G~~~~~~~~~~C 388 (456)
T PLN03003 328 IGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSG-----SGQVAQGQCLNVRGASTIAVPGLEC 388 (456)
T ss_pred EEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCC-----CCCccCcEEeccccccCceECCCCc
Confidence 999877788999999999999999999999986310 1235689999999999998888898
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=1e-72 Score=553.83 Aligned_cols=350 Identities=39% Similarity=0.735 Sum_probs=322.9
Q ss_pred CceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCC-CcEEEeCCc-eeeEeeeEeecCCC-CceEEEEeeEEEEecCCc
Q 043757 31 YSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGA-PAKVLIPSG-TFLTGPVVFSGPCK-SAITVEVRGIVKATTDLK 107 (407)
Q Consensus 31 ~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~-g~tV~~p~G-~Y~~~~l~l~~~~~-s~vtl~~~G~i~~~~~~~ 107 (407)
++++++|+||||+|||.+|||+|||+|+++||+..+ +++|+|||| +|++++|.|+++|+ ++++|+++|+|+++.+..
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 568999999999999999999999999987786433 379999999 69999999998774 579999999999999998
Q ss_pred CCCC---CceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEE
Q 043757 108 EYAD---GDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHIL 184 (407)
Q Consensus 108 ~~~~---~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~ 184 (407)
+|+. ..|+.+.+++|++|.|.|+|||+|+.||. +++|.+|+|++|++++++|+|.|+++
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~------------------~l~~~~~~nv~v~gitl~nsp~~~i~ 184 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE------------------ALHISKCDNLTINGITSIDSPKNHIS 184 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc------------------eEEEEeecCeEEeeeEEEcCCceEEE
Confidence 8963 57999999999999999999999999996 38999999999999999999999999
Q ss_pred EeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 185 LVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 185 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
+..|++++|++++|.++..++|+||||+.+|+||+|+||+|.++||||++++++.|+.|+++.|..+||++|||+++.+.
T Consensus 185 i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~ 264 (409)
T PLN03010 185 IKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGA 264 (409)
T ss_pred EeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCC
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCceEEEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecCCeeEEEEeecCCCCC----CCCceEEEEEEEEe
Q 043757 265 EMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKN----EPSRVKITDVHYKN 340 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~----~~~~~~i~nI~~~n 340 (407)
...|+||+|+||+|.++.+|++||+|.++ +|.|+||+|+||+++++++||.|++.|++.+. .++.+.|+||+|+|
T Consensus 265 ~~~V~nV~v~n~~i~~t~~GirIKt~~G~-~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~n 343 (409)
T PLN03010 265 NAKVSDVHVTHCTFNQTTNGARIKTWQGG-QGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVG 343 (409)
T ss_pred CCeeEEEEEEeeEEeCCCcceEEEEecCC-CEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEe
Confidence 67899999999999999999999999875 69999999999999999999999999986432 45678999999999
Q ss_pred EEEEeccceeEEEEeCCCCceecEEEEeEEEEecCCCccccccCCCCceeeeeceecccceeCCCCC
Q 043757 341 IKGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC 407 (407)
Q Consensus 341 I~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~p~~~ 407 (407)
|+++...+.++.+.|++..||+||+|+||+++.+. +. ++...|.++++...++++|++|
T Consensus 344 i~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~-------g~-~~~~~C~nv~g~~~~~~~~~~C 402 (409)
T PLN03010 344 FRGTTSNENAITLKCSAITHCKDVVMDDIDVTMEN-------GE-KPKVECQNVEGESSDTDLMRDC 402 (409)
T ss_pred eEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecC-------CC-ccceEeeCccccccCCCCCCcc
Confidence 99998778899999999999999999999999876 32 4678999999999999999999
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=7e-57 Score=436.69 Aligned_cols=319 Identities=37% Similarity=0.619 Sum_probs=273.7
Q ss_pred hcCCCCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecCeEEeCCCCccccc
Q 043757 62 CGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKL 141 (407)
Q Consensus 62 ~~~~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~w~~ 141 (407)
|++.++++|++|+|+|+++++.|++++.+++++.|+|++.++.....++...||.+.+++|++|+|.|+|||+|+.||+.
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~ 80 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGPNSALIYAENAENITITGKGTIDGNGQAWWDG 80 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECETTCEEEEESEEEEG-EESTSE-SEEEEEESEEEEECTTSSEEE--GGGTCSS
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCCccEEEEEEceEEEEecCCceEcCchhhhhcc
Confidence 55667789999999999999999865557899999999998755555544788999999999999999999999999986
Q ss_pred cCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEE
Q 043757 142 KDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNIT 221 (407)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~ 221 (407)
.. ........||+++.|.+|++++|++++++++|.|++++..|+|++|++++|.++...+|+|||++.+|+||+|+
T Consensus 81 ~~----~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~ 156 (326)
T PF00295_consen 81 SG----DANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIE 156 (326)
T ss_dssp CT----THCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEE
T ss_pred cc----ccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEE
Confidence 43 11134567899999999999999999999999999999999999999999999887899999999999999999
Q ss_pred eeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEEEEecCCCCceEEeE
Q 043757 222 NSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRI 301 (407)
Q Consensus 222 n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI 301 (407)
||+|.++||||++++++.||+|+||+|..+||++|||++.......++||+|+||++.++.+|++||++++. +|.|+||
T Consensus 157 n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~-~G~v~nI 235 (326)
T PF00295_consen 157 NCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGG-GGYVSNI 235 (326)
T ss_dssp SEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTT-SEEEEEE
T ss_pred EeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEeccc-ceEEece
Confidence 999999999999999888999999999999999999997644335799999999999999999999999853 7999999
Q ss_pred EEEEEEEecCCeeEEEEeecCCCCC---CCCceEEEEEEEEeEEEEeccceeEEEEeCCCCceecEEEEeEEEEecCCCc
Q 043757 302 FYENIIMDKVKNPIIIDQNYGAKKN---EPSRVKITDVHYKNIKGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSA 378 (407)
Q Consensus 302 ~~~ni~~~~~~~~i~i~~~~~~~~~---~~~~~~i~nI~~~nI~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~ 378 (407)
+|+||+++++.+|+.|++.|.+... .+..+.|+||+|+||+++.....++++.|.+..||+||+|+||++++ +
T Consensus 236 ~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g--- 311 (326)
T PF00295_consen 236 TFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G--- 311 (326)
T ss_dssp EEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S---
T ss_pred EEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C---
Confidence 9999999999999999999977322 23457999999999999997667999999999999999999999998 4
Q ss_pred cccccCCCCceeeeecee
Q 043757 379 KKAEANLPFSSSCANAEA 396 (407)
Q Consensus 379 ~~~~~~~~~~~~c~~~~~ 396 (407)
.....|.++..
T Consensus 312 -------~~~~~c~nv~~ 322 (326)
T PF00295_consen 312 -------KKPAQCKNVPS 322 (326)
T ss_dssp -------BSESEEBSCCT
T ss_pred -------CcCeEEECCCC
Confidence 23468888754
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-40 Score=331.37 Aligned_cols=274 Identities=32% Similarity=0.491 Sum_probs=232.2
Q ss_pred CCceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCceeeEeeeEeecCCCCceEEEEe-e-EEEEecCCc
Q 043757 30 NYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVR-G-IVKATTDLK 107 (407)
Q Consensus 30 ~~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~-G-~i~~~~~~~ 107 (407)
.....++|.+|||+|||.+|+++|||+|+ ++|.+.+|++|+||||+|+.++|+|+ |+++|+++ | +|..+.++.
T Consensus 78 ~~~t~~sv~~~ga~gDG~t~~~~aiq~AI-~~ca~a~Gg~V~lPaGtylsg~l~LK----S~~~L~l~egatl~~~~~p~ 152 (542)
T COG5434 78 ATDTAFSVSDDGAVGDGATDNTAAIQAAI-DACASAGGGTVLLPAGTYLSGPLFLK----SNVTLHLAEGATLLASSNPK 152 (542)
T ss_pred cccceeeeccccccccCCccCHHHHHHHH-HhhhhhcCceEEECCceeEeeeEEEe----cccEEEecCCceeeCCCChh
Confidence 34568999999999999999999999996 57777889999999999999999999 99999995 6 999888888
Q ss_pred CCCC---------C-----------------------ceEEEEeeeceE-EecCeEEeCCC----CccccccCCCCCCCC
Q 043757 108 EYAD---------G-----------------------DWILFENIDGLL-LTGGGTFDGQG----AASWKLKDSNPQHSA 150 (407)
Q Consensus 108 ~~~~---------~-----------------------~~i~~~~~~nv~-I~G~G~idg~g----~~~w~~~~~~~~~~~ 150 (407)
.|+. . ..+.....+|.. |.|.|+++|++ ..||..... ...
T Consensus 153 ~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~---~~~ 229 (542)
T COG5434 153 DYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGA---VET 229 (542)
T ss_pred hccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccc---hhh
Confidence 8872 1 112222334555 88888898864 226654320 001
Q ss_pred CCCC--CCCceeEEeccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecC
Q 043757 151 TKCD--LLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTG 228 (407)
Q Consensus 151 ~~~~--~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~ 228 (407)
.... .||..+.+..|.||.++|++|.+++.|.+|+..|+|++++|++|.+.... |+|||++.+|+||+|++|+|.++
T Consensus 230 ~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtg 308 (542)
T COG5434 230 RIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTG 308 (542)
T ss_pred cccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecC
Confidence 1111 58999999999999999999999999999999999999999999997765 99999999999999999999999
Q ss_pred CceEEecCC-----------ceeEEEEeEEEcCCce-EEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEEEEecCCCCc
Q 043757 229 DDCVSIGHG-----------STDISVSRITCGPGHG-ISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASL 296 (407)
Q Consensus 229 dD~i~i~s~-----------s~nI~I~n~~~~~~~g-i~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g 296 (407)
||||+++++ ++||.|+||++..+|| +.+|++ +.++++||++|||.|.+...|++||+..+. +|
T Consensus 309 DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~~-gG 383 (542)
T COG5434 309 DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDGR-GG 383 (542)
T ss_pred CceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeeccc-ce
Confidence 999999985 6999999999999996 888998 789999999999999999999999999864 69
Q ss_pred eEEeEEEEEEEEecCCeeEEE
Q 043757 297 KASRIFYENIIMDKVKNPIII 317 (407)
Q Consensus 297 ~i~nI~~~ni~~~~~~~~i~i 317 (407)
.++||+|+++++.++..+..|
T Consensus 384 ~v~nI~~~~~~~~nv~t~~~i 404 (542)
T COG5434 384 GVRNIVFEDNKMRNVKTKLSI 404 (542)
T ss_pred eEEEEEEecccccCcccceee
Confidence 999999999999998544333
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.95 E-value=5.1e-26 Score=221.00 Aligned_cols=250 Identities=19% Similarity=0.210 Sum_probs=192.9
Q ss_pred CCCCCceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCceeeEeeeEeecCCCCceEEEEe-eEE--EEe
Q 043757 27 AEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVR-GIV--KAT 103 (407)
Q Consensus 27 ~~~~~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~-G~i--~~~ 103 (407)
+|..+.+.+++++|||++||.+|+|+|||+||++| + .++++|.+|||+|+.+++.|+ ++++|.++ |.. ...
T Consensus 30 ~p~~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L~----spltL~G~~gAt~~vId 103 (455)
T TIGR03808 30 APLTSTLGRDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRLP----SGAQLIGVRGATRLVFT 103 (455)
T ss_pred cCCCCccCCCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEEC----CCcEEEecCCcEEEEEc
Confidence 45567778999999999999999999999998754 4 345799999999999999999 99999987 432 111
Q ss_pred cCCcCCCCCceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceE
Q 043757 104 TDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHI 183 (407)
Q Consensus 104 ~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i 183 (407)
.. ..++...+.+||+|+|. +|++.|..|- .++.+|++..|++++|++++|.++..|+|
T Consensus 104 G~------~~lIiai~A~nVTIsGL-tIdGsG~dl~---------------~rdAgI~v~~a~~v~Iedn~L~gsg~FGI 161 (455)
T TIGR03808 104 GG------PSLLSSEGADGIGLSGL-TLDGGGIPLP---------------QRRGLIHCQGGRDVRITDCEITGSGGNGI 161 (455)
T ss_pred CC------ceEEEEecCCCeEEEee-EEEeCCCccc---------------CCCCEEEEccCCceEEEeeEEEcCCcceE
Confidence 11 45666677899999995 9999986542 26778999999999999999999988999
Q ss_pred EEeeee----------------------eEEEEeEEEECCCC--------------------------------CCCCce
Q 043757 184 LLVFCQ----------------------NFTASNLNITAPDE--------------------------------SPNTDG 209 (407)
Q Consensus 184 ~~~~~~----------------------nv~i~n~~i~~~~~--------------------------------~~n~DG 209 (407)
.++.|+ ++.|++.+|....+ ...++|
T Consensus 162 ~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNG 241 (455)
T TIGR03808 162 WLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNA 241 (455)
T ss_pred EEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCcccc
Confidence 999999 88888888776443 235678
Q ss_pred EEccCceeEEEEeeEEecCC-ceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEEE
Q 043757 210 IHLSLSSLVNITNSKIGTGD-DCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIK 288 (407)
Q Consensus 210 i~~~~s~nv~I~n~~i~~~d-D~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~ 288 (407)
|+++.+.+++|++++|+..+ |+|.+.+ ++|++|+++.|..-.=.++-++ ...+.-.|+|+++.+...|+.+.
T Consensus 242 I~~~~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~av~ 314 (455)
T TIGR03808 242 INAFRAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGVSVC 314 (455)
T ss_pred EEEEccCCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceEEEE
Confidence 99988889999999999888 8888887 7788888888874321233221 11122457788888888888887
Q ss_pred Eec-CCCCceEEeEEEEEEEEecC
Q 043757 289 TKR-GSASLKASRIFYENIIMDKV 311 (407)
Q Consensus 289 ~~~-~~~~g~i~nI~~~ni~~~~~ 311 (407)
+.. +++...+..-.+||++-+..
T Consensus 315 nf~~ggr~~~~~gn~irn~~~~~p 338 (455)
T TIGR03808 315 NFNEGGRLAVVQGNIIRNLIPKRP 338 (455)
T ss_pred eecCCceEEEEecceeeccccCCC
Confidence 764 33345677777888887663
No 10
>PLN02793 Probable polygalacturonase
Probab=99.89 E-value=8.2e-21 Score=189.67 Aligned_cols=218 Identities=19% Similarity=0.219 Sum_probs=173.3
Q ss_pred CceEEEEeeEEEEecCCcCCC-------------CCceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCC
Q 043757 90 SAITVEVRGIVKATTDLKEYA-------------DGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLL 156 (407)
Q Consensus 90 s~vtl~~~G~i~~~~~~~~~~-------------~~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~ 156 (407)
++++|.+.|+|.+... .+|. .+.++.+.+++|++|+|--+.+.. .|
T Consensus 143 ~ni~ItG~G~IDG~G~-~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---~~----------------- 201 (443)
T PLN02793 143 NHLTVEGGGTVNGMGH-EWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---QM----------------- 201 (443)
T ss_pred ceEEEEeceEEECCCc-ccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---Ce-----------------
Confidence 6889988899986542 2331 145799999999999994333322 23
Q ss_pred CceeEEeccCcEEEEeeEEEcC----CCceEEEeeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCce
Q 043757 157 PISIKFNHVNNSVVTGINSLNS----KGFHILLVFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDC 231 (407)
Q Consensus 157 ~~~i~~~~~~nv~I~~v~i~n~----~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~ 231 (407)
.+++.+|++++|+++++.++ ..++|++.+|+||.|+|++|.+.+ |+|.+. +|+||+|+||.+..++ |
T Consensus 202 --~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gD-----DcIaik~~s~nI~I~n~~c~~Gh-G 273 (443)
T PLN02793 202 --HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGD-----DCISIVGNSSRIKIRNIACGPGH-G 273 (443)
T ss_pred --EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCC-----CeEEecCCcCCEEEEEeEEeCCc-c
Confidence 28899999999999999874 347899999999999999999854 688886 6899999999998886 7
Q ss_pred EEecCC--------ceeEEEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEEEEecCC---------
Q 043757 232 VSIGHG--------STDISVSRITCGPG-HGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGS--------- 293 (407)
Q Consensus 232 i~i~s~--------s~nI~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~--------- 293 (407)
|+++|. .+||+|+||++.+. .|+.|++... ..+.++||+|+|++|.+..++|.|......
T Consensus 274 isIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~t 351 (443)
T PLN02793 274 ISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQT 351 (443)
T ss_pred EEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCC
Confidence 999882 69999999999876 5999998632 346899999999999999999998764311
Q ss_pred CCceEEeEEEEEEEEecC-CeeEEEEeecCCCCCCCCceEEEEEEEEeEEEEec
Q 043757 294 ASLKASRIFYENIIMDKV-KNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSI 346 (407)
Q Consensus 294 ~~g~i~nI~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~i~nI~~~nI~~~~~ 346 (407)
....|+||+|+||+.+.. +.++.|. ..+..+++||+|+||+++..
T Consensus 352 s~v~I~nI~~~nI~Gt~~~~~ai~l~--------cs~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 352 SAVKVENISFVHIKGTSATEEAIKFA--------CSDSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred CCeEEEeEEEEEEEEEEcccccEEEE--------eCCCCCEeeEEEEeeEEEec
Confidence 124689999999998875 3466665 23456899999999999864
No 11
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.89 E-value=1.7e-20 Score=185.30 Aligned_cols=220 Identities=19% Similarity=0.235 Sum_probs=174.0
Q ss_pred CceEEEEeeEEEEecCCcCCCC------------CceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCC
Q 043757 90 SAITVEVRGIVKATTDLKEYAD------------GDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLP 157 (407)
Q Consensus 90 s~vtl~~~G~i~~~~~~~~~~~------------~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~ 157 (407)
.+++|.+.|+|.+... .+|.. +.++.+.+++|+.|+| |.......|
T Consensus 122 ~ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~g---itl~nSp~w------------------ 179 (404)
T PLN02188 122 NGLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRG---ITSVNSKFF------------------ 179 (404)
T ss_pred eeEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeC---eEEEcCCCe------------------
Confidence 6788888899987653 34420 4678999999999999 333333334
Q ss_pred ceeEEeccCcEEEEeeEEEcC----CCceEEEeeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceE
Q 043757 158 ISIKFNHVNNSVVTGINSLNS----KGFHILLVFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCV 232 (407)
Q Consensus 158 ~~i~~~~~~nv~I~~v~i~n~----~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i 232 (407)
.+++.+|++++|+++++.++ ..++|++.+|+||.|+|++|.+.+ |+|.+. +++||+|+|+....++ +|
T Consensus 180 -~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GD-----DcIaiksg~~nI~I~n~~c~~gh-Gi 252 (404)
T PLN02188 180 -HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGD-----DCISIGQGNSQVTITRIRCGPGH-GI 252 (404)
T ss_pred -EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCC-----cEEEEccCCccEEEEEEEEcCCC-cE
Confidence 38999999999999999864 347899999999999999999954 689886 6789999999998775 79
Q ss_pred EecC--------CceeEEEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEEEEecC---------CC
Q 043757 233 SIGH--------GSTDISVSRITCGPG-HGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRG---------SA 294 (407)
Q Consensus 233 ~i~s--------~s~nI~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~---------~~ 294 (407)
+++| +.+||+|+||++.++ +|+.|++.....+.+.++||+|+|++|.+...+|.|..... ..
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s 332 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPS 332 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCC
Confidence 9987 269999999999976 59999885332245789999999999999999998875321 11
Q ss_pred CceEEeEEEEEEEEecC-CeeEEEEeecCCCCCCCCceEEEEEEEEeEEEEec
Q 043757 295 SLKASRIFYENIIMDKV-KNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSI 346 (407)
Q Consensus 295 ~g~i~nI~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~i~nI~~~nI~~~~~ 346 (407)
...|+||+|+||+.+.. ..++.+. ..+..+++||+|+||+++..
T Consensus 333 ~v~I~nIt~~nI~gt~~~~~a~~l~--------cs~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 333 GVTLSDIYFKNIRGTSSSQVAVLLK--------CSRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred CcEEEeEEEEEEEEEecCceEEEEE--------ECCCCCEeeEEEEeeEEEec
Confidence 36699999999999875 3466665 33456899999999999864
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.88 E-value=1.4e-20 Score=187.18 Aligned_cols=237 Identities=17% Similarity=0.218 Sum_probs=179.4
Q ss_pred cEEEeCCce--eeE--eeeEeecCCCCceEEEEe--eEEEEecCCcCCCC-------------CceEEEEeeeceEEecC
Q 043757 68 AKVLIPSGT--FLT--GPVVFSGPCKSAITVEVR--GIVKATTDLKEYAD-------------GDWILFENIDGLLLTGG 128 (407)
Q Consensus 68 ~tV~~p~G~--Y~~--~~l~l~~~~~s~vtl~~~--G~i~~~~~~~~~~~-------------~~~i~~~~~~nv~I~G~ 128 (407)
++|.+|+-. |.- ..+.+.+. ++++|.+. |+|.+.. ..+|.. +.++.+.+++|++|+|
T Consensus 132 g~L~~s~d~~~y~~~~~wi~~~~~--~ni~I~G~~~GtIDG~G-~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~g- 207 (431)
T PLN02218 132 GTLSASQKRSDYKDISKWIMFDGV--NNLSVDGGSTGVVDGNG-ETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKN- 207 (431)
T ss_pred EEEEeCCChhhccccccCEEEecC--cEEEEECCCCcEEeCCc-hhhhhcccccCCcCccCcCCEEEEEEccccEEEeC-
Confidence 466665432 321 12455433 67888885 8887654 233321 3578899999999999
Q ss_pred eEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcC----CCceEEEeeeeeEEEEeEEEECCCCC
Q 043757 129 GTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNS----KGFHILLVFCQNFTASNLNITAPDES 204 (407)
Q Consensus 129 G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~----~~~~i~~~~~~nv~i~n~~i~~~~~~ 204 (407)
|.......| .+++.+|+|++|+++++.++ ..++|++.+|+||.|+|++|.+.+
T Consensus 208 --itl~nSp~w-------------------~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGD-- 264 (431)
T PLN02218 208 --LRVRNAQQI-------------------QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGD-- 264 (431)
T ss_pred --eEEEcCCCE-------------------EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCC--
Confidence 332223334 38999999999999999863 347899999999999999999954
Q ss_pred CCCceEEcc-CceeEEEEeeEEecCCceEEecCC--------ceeEEEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEE
Q 043757 205 PNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHG--------STDISVSRITCGPG-HGISVGSLGNKPDEMDVNGITVF 274 (407)
Q Consensus 205 ~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~--------s~nI~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~ 274 (407)
|+|.+. +++||+|+||.+..++ ||+++|. .+||+|+||++.+. .|+.|++... ..+.++||+|+
T Consensus 265 ---DcIaIksgs~nI~I~n~~c~~GH-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G--g~G~v~nI~f~ 338 (431)
T PLN02218 265 ---DCISIESGSQNVQINDITCGPGH-GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG--GSGTASNIIFQ 338 (431)
T ss_pred ---ceEEecCCCceEEEEeEEEECCC-CEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC--CCeEEEEEEEE
Confidence 688887 5889999999998776 7999883 58999999999876 5999998632 34789999999
Q ss_pred eEEEeCCCeeEEEEEecCC--------CCceEEeEEEEEEEEecCC-eeEEEEeecCCCCCCCCceEEEEEEEEeEEEEe
Q 043757 275 NCTLITTTNGLRIKTKRGS--------ASLKASRIFYENIIMDKVK-NPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTS 345 (407)
Q Consensus 275 n~~~~~~~~gi~i~~~~~~--------~~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~i~nI~~~nI~~~~ 345 (407)
|++|.+..++|.|...... ....|+||+|+||+.+... .++.+. ..+..+++||+|+||+++.
T Consensus 339 ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~--------cs~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 339 NIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFN--------CSKNYPCQGIVLDNVNIKG 410 (431)
T ss_pred eEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEE--------ECCCCCEeeEEEEeEEEEC
Confidence 9999999999988754311 1245999999999998653 466665 3345689999999999975
No 13
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.87 E-value=7.3e-21 Score=175.04 Aligned_cols=212 Identities=22% Similarity=0.335 Sum_probs=126.4
Q ss_pred eEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCceeeEee-eEeecCCCCceEEEEee---E-EEEecCCcC
Q 043757 34 YFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGP-VVFSGPCKSAITVEVRG---I-VKATTDLKE 108 (407)
Q Consensus 34 ~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~~~-l~l~~~~~s~vtl~~~G---~-i~~~~~~~~ 108 (407)
.+||+||||+|||.+|||+|||+||. +++..++++||||||+|+++. |.++ ++++|.++| + +........
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~-~~~~~~g~~v~~P~G~Y~i~~~l~~~----s~v~l~G~g~~~~~~~~~~~~~~ 75 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAID-AAAAAGGGVVYFPPGTYRISGTLIIP----SNVTLRGAGGNSTILFLSGSGDS 75 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHH-HHCSTTSEEEEE-SEEEEESS-EEE-----TTEEEEESSTTTEEEEECTTTST
T ss_pred CcceeecCcCCCCChhHHHHHHHhhh-hcccCCCeEEEEcCcEEEEeCCeEcC----CCeEEEccCCCeeEEEecCcccc
Confidence 37999999999999999999999983 455678899999999999974 9999 999999985 3 333333222
Q ss_pred CCCCce-EEEEe-eec--eEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEE
Q 043757 109 YADGDW-ILFEN-IDG--LLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHIL 184 (407)
Q Consensus 109 ~~~~~~-i~~~~-~~n--v~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~ 184 (407)
+..... ..+.. -.+ +.|++ -+|++.....- ....++.+..++++.|+++++.+....++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~~---------------~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~ 139 (225)
T PF12708_consen 76 FSVVPGIGVFDSGNSNIGIQIRN-LTIDGNGIDPN---------------NNNNGIRFNSSQNVSISNVRIENSGGDGIY 139 (225)
T ss_dssp SCCEEEEEECCSCSCCEEEEEEE-EEEEETCGCE----------------SCEEEEEETTEEEEEEEEEEEES-SS-SEE
T ss_pred cccccceeeeecCCCCceEEEEe-eEEEcccccCC---------------CCceEEEEEeCCeEEEEeEEEEccCccEEE
Confidence 221000 11110 011 12333 33333332110 013468888888888888888888777777
Q ss_pred EeeeeeEEEEeEEEECCCCCCCCceEEccC-ceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcC--CceEEEecCCC
Q 043757 185 LVFCQNFTASNLNITAPDESPNTDGIHLSL-SSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGP--GHGISVGSLGN 261 (407)
Q Consensus 185 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~--~~gi~igs~~~ 261 (407)
+..+....+.+..... ++.+.. +.++.+.++.+..+++++..+ .++++|+||.+.. ..|+.+-..
T Consensus 140 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~i~n~~~~~~~~~gi~i~~~-- 207 (225)
T PF12708_consen 140 FNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIILG--NNNITISNNTFEGNCGNGINIEGG-- 207 (225)
T ss_dssp EECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEECE--EEEEEEECEEEESSSSESEEEEEC--
T ss_pred EEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEee--cceEEEEeEEECCccceeEEEECC--
Confidence 7755554444332221 333432 355666777777777774332 3677777777764 246666432
Q ss_pred CCCCCceEEEEEEeEEEeCCCeeE
Q 043757 262 KPDEMDVNGITVFNCTLITTTNGL 285 (407)
Q Consensus 262 ~~~~~~v~ni~i~n~~~~~~~~gi 285 (407)
.+++++|++|.++..|+
T Consensus 208 -------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 -------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp -------SEEEEEEEEEESSSEEE
T ss_pred -------eEEEEEeEEEECCccCc
Confidence 33667777777766665
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.87 E-value=6.7e-20 Score=181.87 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=173.8
Q ss_pred CceEEEEeeEEEEecCCcCCCC----CceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEecc
Q 043757 90 SAITVEVRGIVKATTDLKEYAD----GDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHV 165 (407)
Q Consensus 90 s~vtl~~~G~i~~~~~~~~~~~----~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~ 165 (407)
++++|.+.|+|.+... .+|.. +.++.+.+++|+.|+|- .......| .+++.+|
T Consensus 113 ~~i~I~G~GtIDGqG~-~wW~~~~~rP~~l~f~~~~nv~I~gi---tl~NSp~w-------------------~i~i~~c 169 (456)
T PLN03003 113 EGLVIEGDGEINGQGS-SWWEHKGSRPTALKFRSCNNLRLSGL---THLDSPMA-------------------HIHISEC 169 (456)
T ss_pred cceEEeccceEeCCch-hhhhcccCCceEEEEEecCCcEEeCe---EEecCCcE-------------------EEEEecc
Confidence 6899999999987543 34432 56899999999999993 22222333 3899999
Q ss_pred CcEEEEeeEEEcC---C-CceEEEeeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCC---
Q 043757 166 NNSVVTGINSLNS---K-GFHILLVFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHG--- 237 (407)
Q Consensus 166 ~nv~I~~v~i~n~---~-~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~--- 237 (407)
++++|+++++.++ + .++|++..|+||.|+|+.|.+.+ |+|.+. +|+||+|+||.+..++ ||+++|.
T Consensus 170 ~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGD-----DCIaiksgs~NI~I~n~~c~~GH-GISIGSlg~~ 243 (456)
T PLN03003 170 NYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGD-----DCIAINSGTSNIHISGIDCGPGH-GISIGSLGKD 243 (456)
T ss_pred ccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCC-----CeEEeCCCCccEEEEeeEEECCC-CeEEeeccCC
Confidence 9999999999874 2 37899999999999999999954 688887 5789999999998876 8999883
Q ss_pred -----ceeEEEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEEEEecCC-----------CCceEEe
Q 043757 238 -----STDISVSRITCGPG-HGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGS-----------ASLKASR 300 (407)
Q Consensus 238 -----s~nI~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~-----------~~g~i~n 300 (407)
.+||+|+||++.++ +|+.|++... ..+.++||+|+|++|.+..++|.|...... ....|+|
T Consensus 244 g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G--g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~Isn 321 (456)
T PLN03003 244 GETATVENVCVQNCNFRGTMNGARIKTWQG--GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSK 321 (456)
T ss_pred CCcceEEEEEEEeeEEECCCcEEEEEEeCC--CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEe
Confidence 69999999999876 5999998632 246899999999999999999988654321 1246899
Q ss_pred EEEEEEEEecC-CeeEEEEeecCCCCCCCCceEEEEEEEEeEEEEec
Q 043757 301 IFYENIIMDKV-KNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSI 346 (407)
Q Consensus 301 I~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~i~nI~~~nI~~~~~ 346 (407)
|+|+||+-+.. +.++.+. ..+..+.+||+|+||.++..
T Consensus 322 I~f~NI~GTs~~~~ai~l~--------Cs~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 322 VVFSNFIGTSKSEYGVDFR--------CSERVPCTEIFLRDMKIETA 360 (456)
T ss_pred EEEEeEEEEeCccceEEEE--------eCCCCCeeeEEEEEEEEEec
Confidence 99999997654 4577665 34557899999999999864
No 15
>PLN02155 polygalacturonase
Probab=99.87 E-value=8.6e-20 Score=179.59 Aligned_cols=218 Identities=17% Similarity=0.211 Sum_probs=169.1
Q ss_pred CceEEEEeeEEEEecCCcCCCC----------CceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCce
Q 043757 90 SAITVEVRGIVKATTDLKEYAD----------GDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPIS 159 (407)
Q Consensus 90 s~vtl~~~G~i~~~~~~~~~~~----------~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~ 159 (407)
++++|.. |+|.+... .+|.. +.++.+.+++|++|+| |.......| .
T Consensus 115 ~~i~i~G-G~iDGqG~-~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~g---itl~nSp~w-------------------~ 170 (394)
T PLN02155 115 NRFSLVG-GTFDARAN-GFWSCRKSGQNCPPGVRSISFNSAKDVIISG---VKSMNSQVS-------------------H 170 (394)
T ss_pred CCCEEEc-cEEecCce-eEEEcccCCCCCCCcccceeEEEeeeEEEEC---eEEEcCCCe-------------------E
Confidence 5677776 77765442 22211 3579999999999999 322222333 3
Q ss_pred eEEeccCcEEEEeeEEEcCC----CceEEEeeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEe
Q 043757 160 IKFNHVNNSVVTGINSLNSK----GFHILLVFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSI 234 (407)
Q Consensus 160 i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i 234 (407)
+++.+|++++|+++++.++. .++|++..|+||.|+|+.|.+.+ |+|.+. +|+||+|+||.+..++ ||++
T Consensus 171 i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gD-----DcIaik~gs~nI~I~n~~c~~Gh-GisI 244 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGD-----DCVAIGPGTRNFLITKLACGPGH-GVSI 244 (394)
T ss_pred EEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCC-----ceEEcCCCCceEEEEEEEEECCc-eEEe
Confidence 89999999999999998743 37899999999999999999954 688887 4789999999999876 7999
Q ss_pred cCC--------ceeEEEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEEEEecCC---------CCc
Q 043757 235 GHG--------STDISVSRITCGPG-HGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGS---------ASL 296 (407)
Q Consensus 235 ~s~--------s~nI~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~---------~~g 296 (407)
+|. .+||+|+||++.+. +|+.|++... ...+.++||+|+|++|.+...+|.|...... ...
T Consensus 245 GS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v 323 (394)
T PLN02155 245 GSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGV 323 (394)
T ss_pred ccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCe
Confidence 883 49999999999876 5999998421 1357899999999999999999998653311 013
Q ss_pred eEEeEEEEEEEEecC-CeeEEEEeecCCCCCCCCceEEEEEEEEeEEEEec
Q 043757 297 KASRIFYENIIMDKV-KNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSI 346 (407)
Q Consensus 297 ~i~nI~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~i~nI~~~nI~~~~~ 346 (407)
.|+||+|+|++.+.. ..++.+. ..+..+++||+|+||+++..
T Consensus 324 ~i~~It~~ni~gt~~~~~a~~l~--------c~~~~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 324 KISQVTYKNIQGTSATQEAMKLV--------CSKSSPCTGITLQDIKLTYN 366 (394)
T ss_pred EEEEEEEEeeEEEecCCceEEEE--------eCCCCCEEEEEEEeeEEEec
Confidence 699999999999876 3466665 34456899999999999875
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.87 E-value=7.4e-20 Score=177.79 Aligned_cols=217 Identities=21% Similarity=0.245 Sum_probs=167.6
Q ss_pred CceEEEEeeEEEEecCCcCCC-----------CCceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCc
Q 043757 90 SAITVEVRGIVKATTDLKEYA-----------DGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPI 158 (407)
Q Consensus 90 s~vtl~~~G~i~~~~~~~~~~-----------~~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
+++++.+.|+|.+... .+|. .+.++.+.+++|++|+|.-+.+ ...|
T Consensus 60 ~ni~i~G~G~IDG~G~-~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~n---sp~w------------------- 116 (326)
T PF00295_consen 60 ENITITGKGTIDGNGQ-AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRN---SPFW------------------- 116 (326)
T ss_dssp EEEECTTSSEEE--GG-GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES----SSE-------------------
T ss_pred EEEEecCCceEcCchh-hhhccccccccccccccceeeeeeecceEEEeeEecC---CCee-------------------
Confidence 4666666678886544 2222 1578999999999999932222 2223
Q ss_pred eeEEeccCcEEEEeeEEEcCC----CceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCce-eEEEEeeEEecCCceEE
Q 043757 159 SIKFNHVNNSVVTGINSLNSK----GFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSS-LVNITNSKIGTGDDCVS 233 (407)
Q Consensus 159 ~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~~dD~i~ 233 (407)
.+++.+|++++|+++++.++. ..+|++..|+|++|+|+.|.+.+ |+|.+.+.+ ||+|+||.+..+. +++
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gD-----D~Iaiks~~~ni~v~n~~~~~gh-Gis 190 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGD-----DCIAIKSGSGNILVENCTCSGGH-GIS 190 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSS-----ESEEESSEECEEEEESEEEESSS-EEE
T ss_pred EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccccc-----CcccccccccceEEEeEEEeccc-cce
Confidence 288999999999999998754 36899999999999999999854 689998655 9999999998865 698
Q ss_pred ecCC--------ceeEEEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEEEEecCC--------CCc
Q 043757 234 IGHG--------STDISVSRITCGPG-HGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGS--------ASL 296 (407)
Q Consensus 234 i~s~--------s~nI~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g 296 (407)
+++. .+||+|+||++.++ +|+.|++.. .+.+.++||+|+|++|.+..+++.|...... ...
T Consensus 191 iGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~ 268 (326)
T PF00295_consen 191 IGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGV 268 (326)
T ss_dssp EEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSS
T ss_pred eeeccCCccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCc
Confidence 8862 38999999999876 589998752 2457899999999999999999988754211 125
Q ss_pred eEEeEEEEEEEEecCC-eeEEEEeecCCCCCCCCceEEEEEEEEeEEEEe
Q 043757 297 KASRIFYENIIMDKVK-NPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTS 345 (407)
Q Consensus 297 ~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~i~nI~~~nI~~~~ 345 (407)
.|+||+|+||+.+... .++.+. ..+..+++||+|+||+++.
T Consensus 269 ~i~nI~~~nitg~~~~~~~i~i~--------~~~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 269 SISNITFRNITGTSAGSSAISID--------CSPGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEEEEEEEEEEEESTSEEEEEE---------BTTSSEEEEEEEEEEEES
T ss_pred eEEEEEEEeeEEEeccceEEEEE--------ECCcCcEEeEEEEeEEEEc
Confidence 7999999999998876 677776 2344579999999999988
No 17
>PLN03010 polygalacturonase
Probab=99.85 E-value=1e-18 Score=172.32 Aligned_cols=215 Identities=21% Similarity=0.256 Sum_probs=169.1
Q ss_pred CceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEE
Q 043757 90 SAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSV 169 (407)
Q Consensus 90 s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~ 169 (407)
++++|.+.|+|.+... .+|. ++.+.+++|++|+|.-+.+ ...| .+++.+|++++
T Consensus 139 ~nv~I~G~G~IDG~G~-~ww~---~l~~~~~~nv~v~gitl~n---sp~~-------------------~i~i~~~~nv~ 192 (409)
T PLN03010 139 SGLMIDGSGTIDGRGS-SFWE---ALHISKCDNLTINGITSID---SPKN-------------------HISIKTCNYVA 192 (409)
T ss_pred cccEEeeceEEeCCCc-cccc---eEEEEeecCeEEeeeEEEc---CCce-------------------EEEEeccccEE
Confidence 7889999999986542 3333 6889999999999932322 2233 38899999999
Q ss_pred EEeeEEEcCC----CceEEEeeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCC-------
Q 043757 170 VTGINSLNSK----GFHILLVFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHG------- 237 (407)
Q Consensus 170 I~~v~i~n~~----~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~------- 237 (407)
|+++++.++. .++|++..|+||+|+|++|.+.+ |+|.+. +++++.|+++....++ +|+++|.
T Consensus 193 i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gD-----DcIaiksgs~ni~I~~~~C~~gH-GisIGS~g~~~~~~ 266 (409)
T PLN03010 193 ISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGD-----DCIAINSGSSNINITQINCGPGH-GISVGSLGADGANA 266 (409)
T ss_pred EEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCC-----CeEEecCCCCcEEEEEEEeECcC-CEEEccCCCCCCCC
Confidence 9999998743 37899999999999999999954 688886 4568888888887665 7999883
Q ss_pred -ceeEEEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEEEEecCCC---------CceEEeEEEEEE
Q 043757 238 -STDISVSRITCGPG-HGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSA---------SLKASRIFYENI 306 (407)
Q Consensus 238 -s~nI~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~---------~g~i~nI~~~ni 306 (407)
.+||+|+||++.+. .|+.|++... ..+.++||+|+|++|.+..++|.|....... .-.|+||+|+|+
T Consensus 267 ~V~nV~v~n~~i~~t~~GirIKt~~G--~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni 344 (409)
T PLN03010 267 KVSDVHVTHCTFNQTTNGARIKTWQG--GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGF 344 (409)
T ss_pred eeEEEEEEeeEEeCCCcceEEEEecC--CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEee
Confidence 69999999999876 5999988632 3478999999999999999999887643211 136899999999
Q ss_pred EEecC-CeeEEEEeecCCCCCCCCceEEEEEEEEeEEEEec
Q 043757 307 IMDKV-KNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSI 346 (407)
Q Consensus 307 ~~~~~-~~~i~i~~~~~~~~~~~~~~~i~nI~~~nI~~~~~ 346 (407)
+-+.. +.++.|. ..+..+.+||+|+||.++..
T Consensus 345 ~GT~~~~~~i~l~--------Cs~~~pC~ni~~~~v~l~~~ 377 (409)
T PLN03010 345 RGTTSNENAITLK--------CSAITHCKDVVMDDIDVTME 377 (409)
T ss_pred EEEeCCCccEEEE--------eCCCCCEeceEEEEEEEEec
Confidence 98744 3567765 33456899999999999864
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.83 E-value=5e-18 Score=166.79 Aligned_cols=273 Identities=17% Similarity=0.148 Sum_probs=155.1
Q ss_pred cEEEeCCceeeEee---eEeecCCCCc-eEEEEe-eEEEEecCCcCCCCCceEEEEeeeceEEecCeEEeCCCCcccccc
Q 043757 68 AKVLIPSGTFLTGP---VVFSGPCKSA-ITVEVR-GIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLK 142 (407)
Q Consensus 68 ~tV~~p~G~Y~~~~---l~l~~~~~s~-vtl~~~-G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~ 142 (407)
.+|||+||+|.++. +.|+ ++ .++|++ |.+.. +.+......+|+.|.|+|++.|....|-...
T Consensus 233 ~~lYF~PGVy~ig~~~~l~L~----sn~~~VYlApGAyVk---------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~A~~ 299 (582)
T PF03718_consen 233 DTLYFKPGVYWIGSDYHLRLP----SNTKWVYLAPGAYVK---------GAFEYTDTQQNVKITGRGVLSGEQYVYEADT 299 (582)
T ss_dssp SEEEE-SEEEEEBCTC-EEE-----TT--EEEE-TTEEEE---------S-EEE---SSEEEEESSSEEE-TTS-TTBBC
T ss_pred ceEEeCCceEEeCCCccEEEC----CCccEEEEcCCcEEE---------EEEEEccCCceEEEEeeEEEcCcceeEeccC
Confidence 69999999999974 8888 77 499998 65543 5555555789999999999999876652211
Q ss_pred CCCCCCC---CCCCCC-CCceeE---EeccCcEEEEeeEEEcCCCceEEEeeee----eEEEEeEEEECCCCCCCCceEE
Q 043757 143 DSNPQHS---ATKCDL-LPISIK---FNHVNNSVVTGINSLNSKGFHILLVFCQ----NFTASNLNITAPDESPNTDGIH 211 (407)
Q Consensus 143 ~~~~~~~---~~~~~~-~~~~i~---~~~~~nv~I~~v~i~n~~~~~i~~~~~~----nv~i~n~~i~~~~~~~n~DGi~ 211 (407)
. .+... ...+.+ .-+++. ...++++.++|++|.++|+|.+.+...+ +..|+|.++..... .++|||.
T Consensus 300 ~-e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qtDGi~ 377 (582)
T PF03718_consen 300 E-ESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQTDGIE 377 (582)
T ss_dssp C-CTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT----B
T ss_pred C-CCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-eccCCcc
Confidence 0 00000 000010 113444 4456699999999999999999998544 58999999998654 6999999
Q ss_pred ccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCc-e--EEEecCCCCCCCCceEEEEEEeEEEeCCC------
Q 043757 212 LSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGH-G--ISVGSLGNKPDEMDVNGITVFNCTLITTT------ 282 (407)
Q Consensus 212 ~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~-g--i~igs~~~~~~~~~v~ni~i~n~~~~~~~------ 282 (407)
+.. +-+|+||+++..||+|.+.. .++.|+||+++..+ | +.+|.. ...++||.|+|+.+.+..
T Consensus 378 ly~--nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~~~ 448 (582)
T PF03718_consen 378 LYP--NSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWHNN 448 (582)
T ss_dssp --T--T-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSGGC
T ss_pred ccC--CCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecccC
Confidence 974 66779999999999998876 69999999998643 3 777754 467999999999998752
Q ss_pred ---eeEEEEEecC----C-C----CceEEeEEEEEEEEecCC-eeEEEEeecCCCCCCCCceEEEEEEEEeEEEEe--c-
Q 043757 283 ---NGLRIKTKRG----S-A----SLKASRIFYENIIMDKVK-NPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTS--I- 346 (407)
Q Consensus 283 ---~gi~i~~~~~----~-~----~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~i~nI~~~nI~~~~--~- 346 (407)
.+|.--+... . . .-.|++++|+|+++|+.- ..++|.. -...+|+.++|+++.. .
T Consensus 449 ~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p----------lqn~~nl~ikN~~~~~w~~~ 518 (582)
T PF03718_consen 449 YVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYP----------LQNYDNLVIKNVHFESWNGL 518 (582)
T ss_dssp TTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE------------SEEEEEEEEEEEEECEET-C
T ss_pred CCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEee----------cCCCcceEEEEeecccccCc
Confidence 2433222111 0 0 135799999999999964 3567752 1245566666666541 0
Q ss_pred ----cceeEEEEeC----CCCceecEEEEeEEEEec
Q 043757 347 ----TNVGVNLNCS----SVVPCDGVELVGVDLAFD 374 (407)
Q Consensus 347 ----~~~~~~~~~~----~~~~~~~i~~~nv~~~~~ 374 (407)
....+...-. ......+|.|+|.++.++
T Consensus 519 ~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 519 DITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp GCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred ccccceeeccccccccccccccccceEEEeEEECCE
Confidence 1111111111 123478888888888653
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.73 E-value=6.7e-16 Score=148.88 Aligned_cols=195 Identities=17% Similarity=0.221 Sum_probs=99.7
Q ss_pred HHHHHHHHhcCCCCcEEEeCCceeeE-eeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecCeEEe
Q 043757 54 FTETWAKACGSGAPAKVLIPSGTFLT-GPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFD 132 (407)
Q Consensus 54 iq~Al~~a~~~~~g~tV~~p~G~Y~~-~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~id 132 (407)
||+|+++| ..|+||.||||+|.+ ++|.+.. ++++|..+|. +.. +|+
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~~---~~Iti~G~g~---------------------~~t------vid 47 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLDA---DGVTIRGAGM---------------------DET------ILD 47 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEeC---CCeEEEecCC---------------------Ccc------EEe
Confidence 68997643 447899999999987 5677752 4566655431 000 122
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCC---CCCCce
Q 043757 133 GQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDE---SPNTDG 209 (407)
Q Consensus 133 g~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DG 209 (407)
+.++.. ....+ +..+++++|+++++.++..++|.+..|++++|+++++..... ....+|
T Consensus 48 ~~~~~~-----------------~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~G 109 (314)
T TIGR03805 48 FSGQVG-----------------GAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYG 109 (314)
T ss_pred cccCCC-----------------CCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcce
Confidence 222100 01112 223556666666666555555655566666666666542111 123455
Q ss_pred EEccCceeEEEEeeEEecC-CceEEecCCceeEEEEeEEEcCCc-eEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEE
Q 043757 210 IHLSLSSLVNITNSKIGTG-DDCVSIGHGSTDISVSRITCGPGH-GISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRI 287 (407)
Q Consensus 210 i~~~~s~nv~I~n~~i~~~-dD~i~i~s~s~nI~I~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i 287 (407)
|.+..|++++|++|.++.. |++|.++. +++++|+||++...+ ||.+.. ..++.++|+++.+...|+.+
T Consensus 110 I~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v 179 (314)
T TIGR03805 110 IYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILV 179 (314)
T ss_pred EEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEE
Confidence 6665556666666666553 23555544 556666666555432 455421 13455555555555555555
Q ss_pred EEecCCCCceEEeEEEEEEEEe
Q 043757 288 KTKRGSASLKASRIFYENIIMD 309 (407)
Q Consensus 288 ~~~~~~~~g~i~nI~~~ni~~~ 309 (407)
...++.....-+++++++.++.
T Consensus 180 ~~~p~~~~~~s~~~~v~~N~i~ 201 (314)
T TIGR03805 180 FDLPGLPQPGGSNVRVFDNIIF 201 (314)
T ss_pred eecCCCCcCCccceEEECCEEE
Confidence 4433221122234444444443
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=4.6e-12 Score=128.00 Aligned_cols=154 Identities=17% Similarity=0.209 Sum_probs=129.1
Q ss_pred CCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCC----ceEEecCCceeEEEEeEEEcCCc-e
Q 043757 179 KGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGD----DCVSIGHGSTDISVSRITCGPGH-G 253 (407)
Q Consensus 179 ~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~d----D~i~i~s~s~nI~I~n~~~~~~~-g 253 (407)
....+.+..|+||.+++++|.+++. -++|+..|+|++++|.+|.+.+ |++.+.+ ++|++|++|+|..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 3457899999999999999999764 5799999999999999998744 5999988 999999999999876 5
Q ss_pred EEEecCCCCC---CCCceEEEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecCCeeEEEEeecCCCCCCCCc
Q 043757 254 ISVGSLGNKP---DEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSR 330 (407)
Q Consensus 254 i~igs~~~~~---~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~ 330 (407)
+++.+..... .....++|.|+||+|...+.++.+.++. +|.|+||++||+.+.+...+++|++.. ..+
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~~~~d~GLRikt~~------~~g 382 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVMDNTDRGLRIKTND------GRG 382 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeeeccCcceeeeeeec------ccc
Confidence 8887642211 1245689999999999999889998887 489999999999999999999999753 234
Q ss_pred eEEEEEEEEeEEEEec
Q 043757 331 VKITDVHYKNIKGTSI 346 (407)
Q Consensus 331 ~~i~nI~~~nI~~~~~ 346 (407)
+.++||+|+++.+...
T Consensus 383 G~v~nI~~~~~~~~nv 398 (542)
T COG5434 383 GGVRNIVFEDNKMRNV 398 (542)
T ss_pred eeEEEEEEecccccCc
Confidence 7899999999988764
No 21
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=99.25 E-value=3.1e-10 Score=103.85 Aligned_cols=311 Identities=18% Similarity=0.253 Sum_probs=171.4
Q ss_pred hhHHHHHHHHHHHHhhhhcccCCC-CCCceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCcee--eE-e
Q 043757 5 ERFVVKAVLLLGLTFLSSVVQGAE-PNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTF--LT-G 80 (407)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y--~~-~ 80 (407)
.++.+|-++.++.++++.+.+.+. ..+..++++.||. ..|.-++|.+||.+ +.||.+|+|-- -+ .
T Consensus 4 ~klsrrtf~ta~sala~~hsp~~ra~~~~~~vni~dy~-----~~dwiasfkqaf~e------~qtvvvpagl~cenint 72 (464)
T PRK10123 4 KKLSRRTFLTASSALAFLHTPFARALPARQSVNINDYN-----PHDWIASFKQAFSE------GQTVVVPAGLVCDNINT 72 (464)
T ss_pred cchhhhhhhhhhhHHHHhcCHhhhhcCCCceeehhhcC-----cccHHHHHHHHhcc------CcEEEecCccEeccccc
Confidence 567777777777777766554433 3356799999996 45778999999853 47999999952 23 3
Q ss_pred eeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCcee
Q 043757 81 PVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISI 160 (407)
Q Consensus 81 ~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i 160 (407)
.+.++ .+-||.+.|.|++..+ ++++..+||+ +.|.+ .++-+.+
T Consensus 73 ~ifip----~gktl~v~g~l~gngr------grfvlqdg~q---v~ge~------------------------~g~~hni 115 (464)
T PRK10123 73 GIFIP----PGKTLHILGSLRGNGR------GRFVLQDGSQ---VTGEE------------------------GGSMHNI 115 (464)
T ss_pred ceEeC----CCCeEEEEEEeecCCc------eeEEEecCCE---eecCC------------------------CceeeeE
Confidence 68888 7889999999987544 4566555543 33310 0011112
Q ss_pred EEe-ccCcEEEEeeEEEcC-CCceEEEee-----eeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEec-CCceE
Q 043757 161 KFN-HVNNSVVTGINSLNS-KGFHILLVF-----CQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGT-GDDCV 232 (407)
Q Consensus 161 ~~~-~~~nv~I~~v~i~n~-~~~~i~~~~-----~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-~dD~i 232 (407)
.+. +.++..|+++.+..- |...|.+.. -+|++|+++++....++--..|+|-.- ..+.|.||.|.. ..|+|
T Consensus 116 tldvrgsdc~ikgiamsgfgpvtqiyiggk~prvmrnl~id~itv~~anyailrqgfhnq~-dgaritn~rfs~lqgdai 194 (464)
T PRK10123 116 TLDVRGSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQI-IGANITNCKFSDLQGDAI 194 (464)
T ss_pred EEeeccCceEEeeeeecccCceeEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhcc-ccceeeccccccccCceE
Confidence 221 233455555555331 112233322 246666666666533322334554432 466777777765 34454
Q ss_pred EecC--CceeEEE-----EeEEEcCC---ceEEEecCCC-----CCCCCceEEEEEEeEEEeCCCeeEEEEEecCCCCce
Q 043757 233 SIGH--GSTDISV-----SRITCGPG---HGISVGSLGN-----KPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLK 297 (407)
Q Consensus 233 ~i~s--~s~nI~I-----~n~~~~~~---~gi~igs~~~-----~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~ 297 (407)
...- .-+||.| +...|.++ .||.||-.|. |++...++|..+-|++=.++..=+.+. .++.=.
T Consensus 195 ewnvaindr~ilisdhvie~inctngkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhve---ngkhfv 271 (464)
T PRK10123 195 EWNVAINDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVE---NGKHFV 271 (464)
T ss_pred EEEEEecccceeeehheheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEec---CCcEEE
Confidence 3322 1245554 44556655 4777775544 334567888888888866666444442 222234
Q ss_pred EEeEEEEEEEEecCCeeEEEEeecCCCCCCCCceEEEEEEEEeEEEEeccce----e----EEEEeCCCCceecEEEEeE
Q 043757 298 ASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNV----G----VNLNCSSVVPCDGVELVGV 369 (407)
Q Consensus 298 i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~i~nI~~~nI~~~~~~~~----~----~~~~~~~~~~~~~i~~~nv 369 (407)
|+||.-+||+-+=++.+ -|+ +. ...-.-..|+.++||.+..+... . -+++-.......+|.++|-
T Consensus 272 irnvkaknitpdfskka-gid----na--tvaiygcdnfvidni~mvnsagmligygvikg~ylsipqnfkln~i~ldn~ 344 (464)
T PRK10123 272 IRNIKAKNITPDFSKKA-GID----NA--TVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFKLNNIQLDNT 344 (464)
T ss_pred EEeeeccccCCCchhhc-CCC----cc--eEEEEcccceEEeccccccccccEEEeeeeeccEecccccceeceEeeccc
Confidence 55555555553322211 000 00 00001356888888888764311 1 1222123346777888887
Q ss_pred EEEec
Q 043757 370 DLAFD 374 (407)
Q Consensus 370 ~~~~~ 374 (407)
++.++
T Consensus 345 ~l~yk 349 (464)
T PRK10123 345 HLAYK 349 (464)
T ss_pred cccee
Confidence 77764
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.00 E-value=1.5e-07 Score=91.00 Aligned_cols=181 Identities=11% Similarity=0.112 Sum_probs=126.9
Q ss_pred eeEEeccCcEEEEeeEEEc-------CCCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCce
Q 043757 159 SIKFNHVNNSVVTGINSLN-------SKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDC 231 (407)
Q Consensus 159 ~i~~~~~~nv~I~~v~i~n-------~~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~ 231 (407)
+|.+..+++++|+++++.. ...++|.+..|+++.|+++++....+ +||.+..|++++|+++++.....|
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d----~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASD----AGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCc----ccEEECCCCCeEEECCEEccCcce
Confidence 5888999999999999962 34689999999999999999987432 599999999999999999999999
Q ss_pred EEecCCceeEEEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEEeEEEeCCCe------eEEEEEecCCCCceE----Ee
Q 043757 232 VSIGHGSTDISVSRITCGPG-HGISVGSLGNKPDEMDVNGITVFNCTLITTTN------GLRIKTKRGSASLKA----SR 300 (407)
Q Consensus 232 i~i~s~s~nI~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~------gi~i~~~~~~~~g~i----~n 300 (407)
|.+.. +.++.|+++.+... .|+.+-....- .....++++|+++++.+... |-.+...+.+ .|.+ ++
T Consensus 155 I~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g-~Gi~i~~~~~ 231 (314)
T TIGR03805 155 IEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAG-TGVVVMANRD 231 (314)
T ss_pred EEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceEEECCEEECCCCCCCcccCCceecCCCC-cEEEEEcccc
Confidence 99986 78999999999754 58887433111 12456899999999987531 1112111211 2433 89
Q ss_pred EEEEEEEEecCCe-eEEEEeecCCCC-----CC-CCceEEEEEEEEeEEEEecc
Q 043757 301 IFYENIIMDKVKN-PIIIDQNYGAKK-----NE-PSRVKITDVHYKNIKGTSIT 347 (407)
Q Consensus 301 I~~~ni~~~~~~~-~i~i~~~~~~~~-----~~-~~~~~i~nI~~~nI~~~~~~ 347 (407)
+.|+|.++++... ++.+.. |...+ .+ .-.+..+||.+.+=++...+
T Consensus 232 v~I~~N~i~~n~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~i~~N~~~~~g 284 (314)
T TIGR03805 232 VEIFGNVISNNDTANVLISS-YHSTGLPDQPPDDGFDPYPRNISIHDNTFSDGG 284 (314)
T ss_pred eEEECCEEeCCcceeEEEEe-cccccCCCCCcCCCccCCCcceEEEccEeecCC
Confidence 9999999988765 555542 32211 00 11123477766665555543
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.79 E-value=1.7e-07 Score=85.52 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=66.9
Q ss_pred eeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCCC
Q 043757 187 FCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEM 266 (407)
Q Consensus 187 ~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~~ 266 (407)
+|+|+.++|+.+.+. ..+++++||.|+|+++.+.|. +.. ++||+|.|+.+. |=-+|.
T Consensus 135 ~s~ni~id~l~~~Gn--------Y~Fq~~kNvei~ns~l~sKDA---FWn-~eNVtVyDS~i~---GEYLgW-------- 191 (277)
T PF12541_consen 135 NSENIYIDNLVLDGN--------YSFQYCKNVEIHNSKLDSKDA---FWN-CENVTVYDSVIN---GEYLGW-------- 191 (277)
T ss_pred eccceEEeceEEeCC--------EEeeceeeEEEEccEEecccc---ccc-CCceEEEcceEe---eeEEEE--------
Confidence 345555555555541 345679999999999999872 344 799999999884 333332
Q ss_pred ceEEEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecCCee
Q 043757 267 DVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNP 314 (407)
Q Consensus 267 ~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 314 (407)
..+|+++.||++.+.+ | .-+++|++++|+++.++.-+
T Consensus 192 ~SkNltliNC~I~g~Q-p----------LCY~~~L~l~nC~~~~tdla 228 (277)
T PF12541_consen 192 NSKNLTLINCTIEGTQ-P----------LCYCDNLVLENCTMIDTDLA 228 (277)
T ss_pred EcCCeEEEEeEEeccC-c----------cEeecceEEeCcEeecceee
Confidence 2379999999998877 2 35778899999999876544
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.74 E-value=1.6e-07 Score=80.73 Aligned_cols=140 Identities=22% Similarity=0.270 Sum_probs=99.8
Q ss_pred eeEEeccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCc
Q 043757 159 SIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGS 238 (407)
Q Consensus 159 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s 238 (407)
+|.+....+++|++++|.+...+++++..+..++|++++|.. ...|+.+....++.+++|.+.....++.+. .+
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 377888889999999999999999999999999999999998 446899998899999999999877777776 47
Q ss_pred eeEEEEeEEEcCCc--eEEEecCCCCCCCCceEEEEEEeEEEeCCC-eeEEEEEecCCCCceEEeEEEEEEEEecCC-ee
Q 043757 239 TDISVSRITCGPGH--GISVGSLGNKPDEMDVNGITVFNCTLITTT-NGLRIKTKRGSASLKASRIFYENIIMDKVK-NP 314 (407)
Q Consensus 239 ~nI~I~n~~~~~~~--gi~igs~~~~~~~~~v~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~-~~ 314 (407)
..++|++|.+.... |+.+.. ...+++|++++|.+.. .|+.+.... -.+++++++++.+.. ++
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~g 141 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNG 141 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCccee
Confidence 89999999998653 677732 2467899999999876 778875433 236778888887765 56
Q ss_pred EEEE
Q 043757 315 IIID 318 (407)
Q Consensus 315 i~i~ 318 (407)
+.+.
T Consensus 142 i~~~ 145 (158)
T PF13229_consen 142 IYLI 145 (158)
T ss_dssp EE-T
T ss_pred EEEE
Confidence 6554
No 25
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.62 E-value=1.8e-06 Score=85.17 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=95.7
Q ss_pred eeEEeccCcEEEEeeEEEcCC------CceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEec-CCce
Q 043757 159 SIKFNHVNNSVVTGINSLNSK------GFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGT-GDDC 231 (407)
Q Consensus 159 ~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-~dD~ 231 (407)
.+.-...++++|+|++|.++. ...|++..|++++|++++|.++. .-||.++.|+ ..|.++.|.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 466777999999999999865 34689999999999999999853 2477777776 5555555544 4445
Q ss_pred EEecCCceeEEEEeEEEcCCc--eEEEecC------------------------CCCCCC---CceEEEEEEeEEEeCCC
Q 043757 232 VSIGHGSTDISVSRITCGPGH--GISVGSL------------------------GNKPDE---MDVNGITVFNCTLITTT 282 (407)
Q Consensus 232 i~i~s~s~nI~I~n~~~~~~~--gi~igs~------------------------~~~~~~---~~v~ni~i~n~~~~~~~ 282 (407)
|.+.. +++++|+++++.... ||.|-.. ++++.. -...+++|+++++.++.
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 55544 667777777766432 3444322 111111 12357788888888887
Q ss_pred -eeEEEEEecCCCCceEEeEEEEEEEEecCCe-eEEEE
Q 043757 283 -NGLRIKTKRGSASLKASRIFYENIIMDKVKN-PIIID 318 (407)
Q Consensus 283 -~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~-~i~i~ 318 (407)
.|+++.+. +|++|++.++.+..+ +++..
T Consensus 262 ~dgI~~nss--------s~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 262 YSAVRGNSA--------SNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred cceEEEEcc--------cCcEEECcEeeeeeeeEEEEE
Confidence 78887442 456666666666666 55543
No 26
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.62 E-value=2.4e-06 Score=85.20 Aligned_cols=240 Identities=16% Similarity=0.174 Sum_probs=130.9
Q ss_pred CcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecC------CcCCCC--------C---ceE---EEEeeeceEEe
Q 043757 67 PAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTD------LKEYAD--------G---DWI---LFENIDGLLLT 126 (407)
Q Consensus 67 g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~------~~~~~~--------~---~~i---~~~~~~nv~I~ 126 (407)
..+|||-||.|.-+++.+. ...+++.+.+.|+|.+..- .+.|.. . .++ ...+.++..+.
T Consensus 256 ~~~VYlApGAyVkGAf~~~-~~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~ 334 (582)
T PF03718_consen 256 TKWVYLAPGAYVKGAFEYT-DTQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCE 334 (582)
T ss_dssp --EEEE-TTEEEES-EEE----SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEE
T ss_pred ccEEEEcCCcEEEEEEEEc-cCCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEE
Confidence 3599999999998987766 2236788888888875321 122221 0 122 24445677777
Q ss_pred cCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccC----cEEEEeeEEEcCCCc---eEEEeeeeeEEEEeEEEE
Q 043757 127 GGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVN----NSVVTGINSLNSKGF---HILLVFCQNFTASNLNIT 199 (407)
Q Consensus 127 G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~----nv~I~~v~i~n~~~~---~i~~~~~~nv~i~n~~i~ 199 (407)
| =+|.- .. .+.+.+++.+ ...|++.+...+.+| ++.+. .+-+|+||.+.
T Consensus 335 G-iTI~~--pP-------------------~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly--~nS~i~dcF~h 390 (582)
T PF03718_consen 335 G-ITIND--PP-------------------FHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY--PNSTIRDCFIH 390 (582)
T ss_dssp S--EEE----S-------------------S-SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEE
T ss_pred e-eEecC--CC-------------------cceEEecCCccccccceeeceeeeeeEEeccCCcccc--CCCeeeeeEEE
Confidence 7 23321 11 2236667555 478999999886654 45554 68889999999
Q ss_pred CCCCCCCCceEEccCceeEEEEeeEEecCCc--eEEecC---CceeEEEEeEEEcCC----------ceEEEecCCCC--
Q 043757 200 APDESPNTDGIHLSLSSLVNITNSKIGTGDD--CVSIGH---GSTDISVSRITCGPG----------HGISVGSLGNK-- 262 (407)
Q Consensus 200 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD--~i~i~s---~s~nI~I~n~~~~~~----------~gi~igs~~~~-- 262 (407)
. |.|+|.+.. +++.|++|+++..+. .|.++- ..+||.|+|+.+-.. .+|.- +...+
T Consensus 391 ~-----nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~-ss~~y~~ 463 (582)
T PF03718_consen 391 V-----NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILG-SSPFYDD 463 (582)
T ss_dssp E-----SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEE-E--BTTS
T ss_pred e-----cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEe-ccccccc
Confidence 8 557898887 699999999997433 333332 247899999976211 23322 22122
Q ss_pred -C-----C-CCceEEEEEEeEEEeCCCee-EEEEEecCCCCceEEeEEEEEEEEecCC-----ee-EEEEeecCCCCCCC
Q 043757 263 -P-----D-EMDVNGITVFNCTLITTTNG-LRIKTKRGSASLKASRIFYENIIMDKVK-----NP-IIIDQNYGAKKNEP 328 (407)
Q Consensus 263 -~-----~-~~~v~ni~i~n~~~~~~~~g-i~i~~~~~~~~g~i~nI~~~ni~~~~~~-----~~-i~i~~~~~~~~~~~ 328 (407)
+ + ...+++++|+|+++++...+ ++|.. ...-.|+.++|+.++... .. -.++..+...+ .
T Consensus 464 ~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p-----lqn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~--~ 536 (582)
T PF03718_consen 464 MASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYP-----LQNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMAN--N 536 (582)
T ss_dssp -SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE-------SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT---
T ss_pred ccCCCCCCcccceeeEEEEeEEEecccceeEEEee-----cCCCcceEEEEeecccccCcccccceeeccccccccc--c
Confidence 0 1 13468999999999996544 68854 345578888888887321 11 23343333322 1
Q ss_pred CceEEEEEEEEeEEEEe
Q 043757 329 SRVKITDVHYKNIKGTS 345 (407)
Q Consensus 329 ~~~~i~nI~~~nI~~~~ 345 (407)
......+|.|+|.++-+
T Consensus 537 ~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 537 KQNDTMGIIIENWTVGG 553 (582)
T ss_dssp -B--EEEEEEEEEEETT
T ss_pred ccccccceEEEeEEECC
Confidence 23568888888888744
No 27
>smart00656 Amb_all Amb_all domain.
Probab=98.57 E-value=4.4e-06 Score=74.92 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=91.5
Q ss_pred eEEEeeeeeEEEEeEEEECCCC--CCCCceEEccCceeEEEEeeEEecC----------CceEEecCCceeEEEEeEEEc
Q 043757 182 HILLVFCQNFTASNLNITAPDE--SPNTDGIHLSLSSLVNITNSKIGTG----------DDCVSIGHGSTDISVSRITCG 249 (407)
Q Consensus 182 ~i~~~~~~nv~i~n~~i~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~~----------dD~i~i~s~s~nI~I~n~~~~ 249 (407)
++.+..++||.|+|++|..... ..+.|+|.+.++++|+|++|.+..+ |..+.++.++.+|+|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 4555556788888888887433 2367999999999999999999986 445677888899999999997
Q ss_pred CCc-eEEEecCCCCCCCCceEEEEEEeEEEeCCCe-eEEEEEecCCCCceEEeEEEEEEEEecCC-eeEEEEeecCCCCC
Q 043757 250 PGH-GISVGSLGNKPDEMDVNGITVFNCTLITTTN-GLRIKTKRGSASLKASRIFYENIIMDKVK-NPIIIDQNYGAKKN 326 (407)
Q Consensus 250 ~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~-gi~i~~~~~~~~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~ 326 (407)
..+ +.-+|+.-... .....+|++.++.+.+... .-+++ .| .+.+-|..+.+.. +++.+.
T Consensus 113 ~h~~~~liG~~d~~~-~~~~~~vT~h~N~~~~~~~R~P~~r------~g---~~hv~NN~~~n~~~~~~~~~-------- 174 (190)
T smart00656 113 NHWKVMLLGHSDSDT-DDGKMRVTIAHNYFGNLRQRAPRVR------FG---YVHVYNNYYTGWTSYAIGGR-------- 174 (190)
T ss_pred cCCEEEEEccCCCcc-ccccceEEEECcEEcCcccCCCccc------CC---EEEEEeeEEeCcccEeEecC--------
Confidence 544 78887642111 1224579999998877431 12221 12 2444555555543 454443
Q ss_pred CCCceEEEEEEEEe
Q 043757 327 EPSRVKITDVHYKN 340 (407)
Q Consensus 327 ~~~~~~i~nI~~~n 340 (407)
......+|+=.|++
T Consensus 175 ~~~~v~~E~N~F~~ 188 (190)
T smart00656 175 MGATILSEGNYFEA 188 (190)
T ss_pred CCcEEEEECeEEEC
Confidence 12345666666654
No 28
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=4.5e-06 Score=77.58 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=88.5
Q ss_pred eEEeccCcEEEEeeEEEc-CCCceEEEeeeeeEEEEeEEEECCCC-CCCCceEEc-cCceeEEEEeeEEec---------
Q 043757 160 IKFNHVNNSVVTGINSLN-SKGFHILLVFCQNFTASNLNITAPDE-SPNTDGIHL-SLSSLVNITNSKIGT--------- 227 (407)
Q Consensus 160 i~~~~~~nv~I~~v~i~n-~~~~~i~~~~~~nv~i~n~~i~~~~~-~~n~DGi~~-~~s~nv~I~n~~i~~--------- 227 (407)
+.+.-+.|.+|.|+--.. --.|++.+.+.+||.|+|++|..... .++-|+|.+ ..++||+|++|++..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 555666677776665322 23477888888999999999986432 123589999 578999999999986
Q ss_pred CCceEEecCCceeEEEEeEEEcCCc-eEEEecCCCCCCCCceEEEEEEeEEEeCC
Q 043757 228 GDDCVSIGHGSTDISVSRITCGPGH-GISVGSLGNKPDEMDVNGITVFNCTLITT 281 (407)
Q Consensus 228 ~dD~i~i~s~s~nI~I~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~ 281 (407)
+|..+.++-.+.+|+|++|+|.... +.-+|+.-.......-.+|++.++.|.+.
T Consensus 175 ~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 175 GDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 3456788888999999999998754 67777653211224456899999999885
No 29
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=3.8e-06 Score=78.06 Aligned_cols=179 Identities=16% Similarity=0.191 Sum_probs=126.0
Q ss_pred eEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecCe---EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcE
Q 043757 92 ITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGG---TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNS 168 (407)
Q Consensus 92 vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~G---~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv 168 (407)
+.|++.|+|..+.-. ...+.+..+.|.+|.|.| ++.| ..|.++..+||
T Consensus 77 ~ii~v~Gti~~s~ps-----~~k~~iki~sNkTivG~g~~a~~~g------------------------~gl~i~~a~NV 127 (345)
T COG3866 77 VIIVVKGTITASTPS-----DKKITIKIGSNKTIVGSGADATLVG------------------------GGLKIRDAGNV 127 (345)
T ss_pred EEEEEcceEeccCCC-----CceEEEeeccccEEEeeccccEEEe------------------------ceEEEEeCCcE
Confidence 466777888765211 123778889999999964 3332 23888889999
Q ss_pred EEEeeEEEcCC-----CceEEE-eeeeeEEEEeEEEECCCC---CCCCce-EEcc-CceeEEEEeeEEecCCceEEecCC
Q 043757 169 VVTGINSLNSK-----GFHILL-VFCQNFTASNLNITAPDE---SPNTDG-IHLS-LSSLVNITNSKIGTGDDCVSIGHG 237 (407)
Q Consensus 169 ~I~~v~i~n~~-----~~~i~~-~~~~nv~i~n~~i~~~~~---~~n~DG-i~~~-~s~nv~I~n~~i~~~dD~i~i~s~ 237 (407)
.|++++|.... ...|.+ ....|+-|+++++..... ..-.|| +++. ++..|+|.+|.|...+-+.-+++.
T Consensus 128 IirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~s 207 (345)
T COG3866 128 IIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSS 207 (345)
T ss_pred EEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccC
Confidence 99999998765 467888 789999999999997432 123455 4554 578999999999998877777653
Q ss_pred --------ceeEEEEeEEEcCC--c--eEEEecCCCCCCCCceEEEEEEeEEEeCCC-eeEEEEEecCCCCceEEeEEEE
Q 043757 238 --------STDISVSRITCGPG--H--GISVGSLGNKPDEMDVNGITVFNCTLITTT-NGLRIKTKRGSASLKASRIFYE 304 (407)
Q Consensus 238 --------s~nI~I~n~~~~~~--~--gi~igs~~~~~~~~~v~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~i~nI~~~ 304 (407)
-.+|++.+|+|.+. + -+++| -+++.|+.+.... .|+.+.. |.-..|..|
T Consensus 208 D~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG------------~vHvyNNYy~~~~~~g~a~~i------G~~AkiyvE 269 (345)
T COG3866 208 DSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG------------MVHVYNNYYEGNPKFGVAITI------GTSAKIYVE 269 (345)
T ss_pred CcccccCCceeEEEeccccccccccCCceEee------------EEEEeccccccCcccceEEee------ccceEEEEe
Confidence 25699999999764 2 26665 3677888888543 4544422 222347778
Q ss_pred EEEEecCCeeEEE
Q 043757 305 NIIMDKVKNPIII 317 (407)
Q Consensus 305 ni~~~~~~~~i~i 317 (407)
+..+++...++.+
T Consensus 270 ~NyF~~~~~~~~f 282 (345)
T COG3866 270 NNYFENGSEGLGF 282 (345)
T ss_pred cceeccCCCCcee
Confidence 8888777666544
No 30
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.50 E-value=2.4e-06 Score=73.33 Aligned_cols=117 Identities=25% Similarity=0.299 Sum_probs=84.7
Q ss_pred ceeEEeccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCc-eEEecC
Q 043757 158 ISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDD-CVSIGH 236 (407)
Q Consensus 158 ~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD-~i~i~s 236 (407)
.+|.+..+..++|++.+|.+ ...++.+....++.++++.+.... .|+.+..+.+++|++|.+....+ +|.+..
T Consensus 24 ~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 24 DGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-----SGIYVSGSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp ECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TC
T ss_pred eEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-----ceEEEEecCCceecCcEEEcCCCccEEEec
Confidence 35899999999999999999 778999999999999999999843 68999999999999999998544 998874
Q ss_pred CceeEEEEeEEEcCC--ceEEEecCCCCCCCCceEEEEEEeEEEeCCC-eeEEE
Q 043757 237 GSTDISVSRITCGPG--HGISVGSLGNKPDEMDVNGITVFNCTLITTT-NGLRI 287 (407)
Q Consensus 237 ~s~nI~I~n~~~~~~--~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~-~gi~i 287 (407)
.+.+++|++|++... .|+.+... .-.+++|+++++.+.. .|+.+
T Consensus 98 ~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i~~~~~~gi~~ 144 (158)
T PF13229_consen 98 SSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTISNNGGNGIYL 144 (158)
T ss_dssp EECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEEECESSEEEE-
T ss_pred cCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEEEeCcceeEEE
Confidence 267999999999864 57777543 1247889999999865 78877
No 31
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.49 E-value=3e-05 Score=73.12 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=69.1
Q ss_pred eEEeccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCC---CCCCceEEccCceeEEEEeeEEecCCceEEecC
Q 043757 160 IKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDE---SPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGH 236 (407)
Q Consensus 160 i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s 236 (407)
+.-.....-.|++-.+... .++|.+..+.++.+++.+|....+ ..-++||+++.+.+..|....+.-+.|||....
T Consensus 101 ~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~ 179 (408)
T COG3420 101 FVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT 179 (408)
T ss_pred EeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc
Confidence 3344466667777766654 478999999999999999997544 235789999999999999999999999998877
Q ss_pred CceeEEEEeEEEcC
Q 043757 237 GSTDISVSRITCGP 250 (407)
Q Consensus 237 ~s~nI~I~n~~~~~ 250 (407)
|+.-.|+++.+..
T Consensus 180 -S~~~~~~gnr~~~ 192 (408)
T COG3420 180 -SQHNVFKGNRFRD 192 (408)
T ss_pred -cccceecccchhh
Confidence 6666677666643
No 32
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.45 E-value=8.2e-06 Score=75.35 Aligned_cols=169 Identities=21% Similarity=0.271 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCceeeEe-----eeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEE
Q 043757 51 AQAFTETWAKACGSGAPAKVLIPSGTFLTG-----PVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLL 125 (407)
Q Consensus 51 t~aiq~Al~~a~~~~~g~tV~~p~G~Y~~~-----~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I 125 (407)
-+.|++|+..| ..|.+|++-||+|.-. ||.++ +.++|+++..-+.. .++.+
T Consensus 15 ~~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i~----~gVtl~G~~~~kG~-----------------~~il~ 70 (246)
T PF07602_consen 15 FKTITKALQAA---QPGDTIQLAPGTYSEATGETFPIIIK----PGVTLIGNESNKGQ-----------------IDILI 70 (246)
T ss_pred HHHHHHHHHhC---CCCCEEEECCceeccccCCcccEEec----CCeEEeecccCCCc-----------------ceEEe
Confidence 45799997643 4568999999999653 68888 88999876422211 12222
Q ss_pred ecCe---EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcC---CCceEEEeeeeeEEEEeEEEE
Q 043757 126 TGGG---TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNS---KGFHILLVFCQNFTASNLNIT 199 (407)
Q Consensus 126 ~G~G---~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~---~~~~i~~~~~~nv~i~n~~i~ 199 (407)
.|.+ +|++.+... ....+.+....+.+|+++++.|+ ...++.+..+ +.+|+|++|.
T Consensus 71 ~g~~~~~~I~g~~~~~-----------------~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~ 132 (246)
T PF07602_consen 71 TGGGTGPTISGGGPDL-----------------SGQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFT 132 (246)
T ss_pred cCCceEEeEeccCccc-----------------cceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEE
Confidence 2211 233332110 01235666778888888888887 3345666665 7777777777
Q ss_pred CCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcC-CceEEEecCCCCCCCCceEEEEEEeEEE
Q 043757 200 APDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGP-GHGISVGSLGNKPDEMDVNGITVFNCTL 278 (407)
Q Consensus 200 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~-~~gi~igs~~~~~~~~~v~ni~i~n~~~ 278 (407)
.. ..+||.+... ..+....+++|+++.+.. ..|+++-.. ...++ -.|+|+.+
T Consensus 133 ~~----~~~GI~v~g~-----------------~~~~~i~~~vI~GN~~~~~~~Gi~i~~~-----~~~~~-n~I~NN~I 185 (246)
T PF07602_consen 133 NN----GREGIFVTGT-----------------SANPGINGNVISGNSIYFNKTGISISDN-----AAPVE-NKIENNII 185 (246)
T ss_pred CC----ccccEEEEee-----------------ecCCcccceEeecceEEecCcCeEEEcc-----cCCcc-ceeeccEE
Confidence 62 2345433221 011123556677776664 358877432 12233 35588888
Q ss_pred eCCCeeEEEE
Q 043757 279 ITTTNGLRIK 288 (407)
Q Consensus 279 ~~~~~gi~i~ 288 (407)
++...||.+.
T Consensus 186 ~~N~~Gi~~~ 195 (246)
T PF07602_consen 186 ENNNIGIVAI 195 (246)
T ss_pred EeCCcCeEee
Confidence 8776687654
No 33
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.44 E-value=9.4e-06 Score=75.38 Aligned_cols=113 Identities=23% Similarity=0.206 Sum_probs=84.5
Q ss_pred eeEEeccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCc
Q 043757 159 SIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGS 238 (407)
Q Consensus 159 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s 238 (407)
.+.+..+.+++|++.++.+. .+++++..+++++|+++.+... ..||.+..+.+.+|+++.|.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 36777888888888888777 7788888888888888888873 368888877766888888887766887766 5
Q ss_pred eeEEEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEEeEEEeCC-CeeEEE
Q 043757 239 TDISVSRITCGPG-HGISVGSLGNKPDEMDVNGITVFNCTLITT-TNGLRI 287 (407)
Q Consensus 239 ~nI~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~-~~gi~i 287 (407)
.+.+|+++++... .||.+... .+.+|++++|.+. ..||.+
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEE
Confidence 6677888887633 47777421 5677778888877 777773
No 34
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.43 E-value=5.2e-06 Score=75.90 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=74.4
Q ss_pred EeccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeE
Q 043757 162 FNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDI 241 (407)
Q Consensus 162 ~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI 241 (407)
+.+++|+.|+++.+.. .-.++.|+||.|+|.++.+-+ .++.|+||+|.|+++..- =++- .|+|+
T Consensus 133 ~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~sKD--------AFWn~eNVtVyDS~i~GE--YLgW--~SkNl 196 (277)
T PF12541_consen 133 FMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDSKD--------AFWNCENVTVYDSVINGE--YLGW--NSKNL 196 (277)
T ss_pred eeeccceEEeceEEeC----CEEeeceeeEEEEccEEeccc--------ccccCCceEEEcceEeee--EEEE--EcCCe
Confidence 3455566666665543 246789999999999999853 378899999999999762 2222 36999
Q ss_pred EEEeEEEcCCceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEE
Q 043757 242 SVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRI 287 (407)
Q Consensus 242 ~I~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i 287 (407)
++-||++.+..|+. +++|++++||+|.++..++.-
T Consensus 197 tliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 197 TLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred EEEEeEEeccCccE-----------eecceEEeCcEeecceeeeee
Confidence 99999997665543 458999999999988866654
No 35
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.37 E-value=1.7e-05 Score=73.69 Aligned_cols=135 Identities=23% Similarity=0.163 Sum_probs=110.7
Q ss_pred eeEEeccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCc
Q 043757 159 SIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGS 238 (407)
Q Consensus 159 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s 238 (407)
.|.+..+++..|++.++.+. ..++.+..+.+++|++++|.. +..||++..+++++|+++.+.....||.+.. +
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-s 87 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMG-S 87 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEc-C
Confidence 48899999999999999775 467789999999999999998 3679999999999999999999889999988 4
Q ss_pred eeEEEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecC-CeeEE
Q 043757 239 TDISVSRITCGPG-HGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKV-KNPII 316 (407)
Q Consensus 239 ~nI~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~-~~~i~ 316 (407)
.+.+|+++++... .||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+. ..++.
T Consensus 88 ~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 88 SNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccceE
Confidence 4559999999854 4777743 24578999999988899998542 4566777777776 67887
Q ss_pred E
Q 043757 317 I 317 (407)
Q Consensus 317 i 317 (407)
+
T Consensus 151 ~ 151 (236)
T PF05048_consen 151 F 151 (236)
T ss_pred E
Confidence 3
No 36
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.37 E-value=5.8e-05 Score=74.59 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCceeeEeeeEee
Q 043757 50 NAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFS 85 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~~~l~l~ 85 (407)
+.++||+|+.+| .+|++|+++.|+|.-..|.+.
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~ 35 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFK 35 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEE
Confidence 468999998654 457899999999973344443
No 37
>PLN02176 putative pectinesterase
Probab=98.20 E-value=0.00076 Score=65.40 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
|-..||+||+.+.... ..-+|++.||+|. ..|.++. .+.+++|+++|
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~GvY~-EkV~Ip~-~k~~vtl~G~g 97 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNGIYR-EKVTIPK-EKGYIYMQGKG 97 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCcEEE-EEEEECC-CCccEEEEEcC
Confidence 4778999986543322 2237899999998 3345531 12567777765
No 38
>PLN02480 Probable pectinesterase
Probab=98.17 E-value=0.00067 Score=65.98 Aligned_cols=79 Identities=10% Similarity=-0.033 Sum_probs=43.8
Q ss_pred EeccCcEEEEeeEEEcCC---------CceEEE-eeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCce
Q 043757 162 FNHVNNSVVTGINSLNSK---------GFHILL-VFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDC 231 (407)
Q Consensus 162 ~~~~~nv~I~~v~i~n~~---------~~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~ 231 (407)
....++++++|++|+|.. ..++-+ ...+.+.++||+|....| -+... ..+-..+||.|...=|-
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QD-----TLy~~-~gR~yf~~C~IeG~VDF 201 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHN-----TLFDY-KGRHYYHSCYIQGSIDF 201 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccc-----eeEeC-CCCEEEEeCEEEeeeeE
Confidence 334678888888888862 123333 346667777777766333 22211 23455666666664444
Q ss_pred EEecCCceeEEEEeEEEc
Q 043757 232 VSIGHGSTDISVSRITCG 249 (407)
Q Consensus 232 i~i~s~s~nI~I~n~~~~ 249 (407)
| ++ .-...+++|++.
T Consensus 202 I-FG--~g~a~fe~C~i~ 216 (343)
T PLN02480 202 I-FG--RGRSIFHNCEIF 216 (343)
T ss_pred E-cc--ceeEEEEccEEE
Confidence 3 22 235666666664
No 39
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.15 E-value=0.0015 Score=59.60 Aligned_cols=123 Identities=25% Similarity=0.301 Sum_probs=79.6
Q ss_pred EEEEeeEEEcCCC------ceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeE
Q 043757 168 SVVTGINSLNSKG------FHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDI 241 (407)
Q Consensus 168 v~I~~v~i~n~~~------~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI 241 (407)
+.|++++|..... .++++..++++.|+|+++.+. +.+|+.+..+....+.+..... ++.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccceeEE
Confidence 3477777765432 357888888889999988873 4467777654444444433321 23333334677
Q ss_pred EEEeEEEcCC-ceEEEecCCCCCCCCceEEEEEEeEEEeC-CCeeEEEEEecCCCCceEEeEEEEEEEEecCCeeE
Q 043757 242 SVSRITCGPG-HGISVGSLGNKPDEMDVNGITVFNCTLIT-TTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPI 315 (407)
Q Consensus 242 ~I~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~-~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i 315 (407)
.+.++.+..+ .|+..++ +++.++|+++.+ ...|+.+... .+++++|++++++..++
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~--------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGG--------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEEC--------SEEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECC--------eEEEEEeEEEECCccCc
Confidence 7788877655 3533321 689999999988 7788888542 23888888888887765
No 40
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.13 E-value=1.3e-05 Score=72.46 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=63.3
Q ss_pred eeeeEEEEeEEEECC-----------CCCCCCceEEccCceeEEEEeeEEecC---------CceEEecCCceeEEEEeE
Q 043757 187 FCQNFTASNLNITAP-----------DESPNTDGIHLSLSSLVNITNSKIGTG---------DDCVSIGHGSTDISVSRI 246 (407)
Q Consensus 187 ~~~nv~i~n~~i~~~-----------~~~~n~DGi~~~~s~nv~I~n~~i~~~---------dD~i~i~s~s~nI~I~n~ 246 (407)
.++||.|+|++|... ......|+|.+..++||+|++|.+..+ |..+.++.++.+|+|++|
T Consensus 44 ~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n 123 (200)
T PF00544_consen 44 GASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNN 123 (200)
T ss_dssp SCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-
T ss_pred CCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEch
Confidence 566666666666651 123467899999999999999999876 445788888999999999
Q ss_pred EEcCCc-eEEEecCCCCCCCCceEEEEEEeEEEeCC
Q 043757 247 TCGPGH-GISVGSLGNKPDEMDVNGITVFNCTLITT 281 (407)
Q Consensus 247 ~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~ 281 (407)
.|.+.+ +..+|+......... .++++.++.+.++
T Consensus 124 ~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 124 IFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred hccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 997643 566776422212233 8899999988764
No 41
>smart00656 Amb_all Amb_all domain.
Probab=98.00 E-value=0.00045 Score=61.96 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=93.1
Q ss_pred eEEeccCcEEEEeeEEEcCC------CceEEEeeeeeEEEEeEEEECCCC----CCCCceE-Ecc-CceeEEEEeeEEec
Q 043757 160 IKFNHVNNSVVTGINSLNSK------GFHILLVFCQNFTASNLNITAPDE----SPNTDGI-HLS-LSSLVNITNSKIGT 227 (407)
Q Consensus 160 i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~n~~i~~~~~----~~n~DGi-~~~-~s~nv~I~n~~i~~ 227 (407)
|.+..++||.|++++|++.. ..+|.+..+++|-|++|++..... ....||. ++. .+.+|+|.+|.|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 77777899999999999753 368999999999999999997410 1124554 444 57999999999988
Q ss_pred CCceEEecCCce-------eEEEEeEEEcCCce--EEEecCCCCCCCCceEEEEEEeEEEeCCC-eeEEEEEecCCCCce
Q 043757 228 GDDCVSIGHGST-------DISVSRITCGPGHG--ISVGSLGNKPDEMDVNGITVFNCTLITTT-NGLRIKTKRGSASLK 297 (407)
Q Consensus 228 ~dD~i~i~s~s~-------nI~I~n~~~~~~~g--i~igs~~~~~~~~~v~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~ 297 (407)
.+-+.-++++.+ +|++.+|.+.+..+ =.+. . -.+++.|+.+.+.. +++... .+
T Consensus 114 h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r--------~--g~~hv~NN~~~n~~~~~~~~~--~~----- 176 (190)
T smart00656 114 HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR--------F--GYVHVYNNYYTGWTSYAIGGR--MG----- 176 (190)
T ss_pred CCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc--------C--CEEEEEeeEEeCcccEeEecC--CC-----
Confidence 777777776432 69999999875321 2221 1 15889999998865 455442 21
Q ss_pred EEeEEEEEEEEec
Q 043757 298 ASRIFYENIIMDK 310 (407)
Q Consensus 298 i~nI~~~ni~~~~ 310 (407)
..+.+|+..+++
T Consensus 177 -~~v~~E~N~F~~ 188 (190)
T smart00656 177 -ATILSEGNYFEA 188 (190)
T ss_pred -cEEEEECeEEEC
Confidence 245666666654
No 42
>PLN02497 probable pectinesterase
Probab=97.98 E-value=0.0021 Score=62.10 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
|-..||+||+.+.... ..-+|++-||+|.- .+.++. .+.+++|+++|
T Consensus 43 df~TIq~AIdavP~~~~~~~~I~Ik~G~Y~E-kV~Ip~-~k~~itl~G~g 90 (331)
T PLN02497 43 NFTTIQSAIDSVPSNNKHWFCINVKAGLYRE-KVKIPY-DKPFIVLVGAG 90 (331)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCcEEEE-EEEecC-CCCcEEEEecC
Confidence 4678999986543322 22369999999973 344431 12567777664
No 43
>PLN02634 probable pectinesterase
Probab=97.90 E-value=0.0064 Score=59.34 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
|-..||+||+.+.... ..-+|+|-||+|.- .|.++. .+.+++|+++|
T Consensus 67 df~TIQaAIda~P~~~~~r~vI~Ik~GvY~E-kV~Ip~-~k~~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSVPKNNTMSVTIKINAGFYRE-KVVVPA-TKPYITFQGAG 114 (359)
T ss_pred CccCHHHHHhhCcccCCccEEEEEeCceEEE-EEEEcC-CCCeEEEEecC
Confidence 4778999987543322 23479999999973 344431 12567777765
No 44
>PLN02682 pectinesterase family protein
Probab=97.89 E-value=0.0085 Score=58.77 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 49 NNAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 49 ddt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
-|-..||+||+.+.... ..-+|+|.||+|. ..+.++. .+.+++|+++|
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~-EkV~Ip~-~k~~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAGTYR-EKVNIPP-LKAYITLEGAG 128 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCceee-EEEEEec-cCceEEEEecC
Confidence 35778999986543322 2358999999997 3445431 12578887775
No 45
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.78 E-value=0.0055 Score=60.90 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=33.3
Q ss_pred cCCCCcccHHHHHHHHHHHhcC--CCCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 43 EANGDKNNAQAFTETWAKACGS--GAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 43 ~gdg~tddt~aiq~Al~~a~~~--~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
.+||.. |-..||+||+.+... ...-+|+|.||+|. ..|.++. .+.+++|+++|
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~-EkV~Ip~-~kp~ItL~G~G 141 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ-GTVYVPA-AAPPITLYGTG 141 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeE-EEEEeCC-CCceEEEEecC
Confidence 345532 477899998654322 22357999999998 3455531 12578888865
No 46
>PLN02773 pectinesterase
Probab=97.77 E-value=0.011 Score=57.06 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=44.8
Q ss_pred EEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEec
Q 043757 161 KFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIG 235 (407)
Q Consensus 161 ~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~ 235 (407)
.+...+++..++++|.|... .++-+ ...+.+.+.+|+|.+..| -+-... .+-.++||.|...=|-| ++
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QD-----TL~~~~-gr~yf~~c~IeG~VDFI-FG 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQD-----TLYLHY-GKQYLRDCYIEGSVDFI-FG 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccc-----eeEeCC-CCEEEEeeEEeecccEE-ee
Confidence 44457888999999988632 12222 135666777777776333 222221 24566666666655544 22
Q ss_pred CCceeEEEEeEEEc
Q 043757 236 HGSTDISVSRITCG 249 (407)
Q Consensus 236 s~s~nI~I~n~~~~ 249 (407)
. -...+++|++.
T Consensus 170 ~--g~a~Fe~c~i~ 181 (317)
T PLN02773 170 N--STALLEHCHIH 181 (317)
T ss_pred c--cEEEEEeeEEE
Confidence 2 35666666664
No 47
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.76 E-value=0.003 Score=65.52 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHhcC--CCCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 50 NAQAFTETWAKACGS--GAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 50 dt~aiq~Al~~a~~~--~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
|-..||+||+++... ...-+|+|.+|+|.- .+.++. .+.+++|+++|
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E-~V~i~~-~k~~v~l~G~g 300 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEE-TVRVPL-EKKNVVFLGDG 300 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCceEEe-eeeecC-CCccEEEEecC
Confidence 467899998765441 233599999999983 344431 12567777765
No 48
>PLN02665 pectinesterase family protein
Probab=97.61 E-value=0.021 Score=56.06 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
|-..||+||+...... ..-+|+|.||+|. ..+.++. .+.+++|++++
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~GvY~-EkV~Ip~-~kp~Itl~G~~ 126 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPGEYN-EKITIDR-SKPFVTLYGSP 126 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCcEEE-EEEEecC-CCCEEEEEecC
Confidence 4778999986543322 2247889999998 3445431 11456666654
No 49
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.58 E-value=0.013 Score=60.14 Aligned_cols=204 Identities=13% Similarity=0.189 Sum_probs=103.3
Q ss_pred cHHHHHHHHHHHhc--CCCCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEec
Q 043757 50 NAQAFTETWAKACG--SGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTG 127 (407)
Q Consensus 50 dt~aiq~Al~~a~~--~~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G 127 (407)
|-..||+|++.+.. ....-+|+|.||+|. ..+.++. .+.+++|+++|. +...|.|
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~-~k~nItl~G~g~---------------------~~TiIt~ 292 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPT-KQKNVMLVGDGK---------------------GKTVIVG 292 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCC-CCceEEEEEcCC---------------------CCeEEEe
Confidence 47789999864322 223458999999997 3344431 125777777651 1111111
Q ss_pred CeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEECCC
Q 043757 128 GGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNITAPD 202 (407)
Q Consensus 128 ~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~~~~ 202 (407)
... .+.+ |. .-...-.....+++..+|++|.|... .++-+ ...+...+.+|+|.+..
T Consensus 293 ~~~-~~~g---~~--------------T~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQ 354 (529)
T PLN02170 293 SRS-NRGG---WT--------------TYQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQ 354 (529)
T ss_pred CCc-CCCC---Cc--------------cccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccC
Confidence 000 0000 00 00112345567888899999988632 22222 24577777777777644
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC-----ceEEEecCCCCCCCCceEEEEEEeEE
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG-----HGISVGSLGNKPDEMDVNGITVFNCT 277 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~-----~gi~igs~~~~~~~~~v~ni~i~n~~ 277 (407)
| -+.... .+-..++|.|...=|-| ++ .-...++||.+..- .| .|=..++ .....-....|.||+
T Consensus 355 D-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avFq~C~I~~~~~~~~~g-~ITAq~R-~~~~~~~Gfvf~~C~ 423 (529)
T PLN02170 355 D-----SLYTHS-KRQFYRETDITGTVDFI-FG--NSAVVFQSCNIAARKPSGDRN-YVTAQGR-SDPNQNTGISIHNCR 423 (529)
T ss_pred C-----cceeCC-CCEEEEeeEEcccccee-cc--cceEEEeccEEEEecCCCCce-EEEecCC-CCCCCCceEEEEeeE
Confidence 3 222222 34466777777655544 22 24567777766421 12 1100111 011223466777777
Q ss_pred EeCCCeeEEEEEecCCCCceEEeEEEEEEEEec
Q 043757 278 LITTTNGLRIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 278 ~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
+.+.. ...++ .....-..+.|.+..+.+
T Consensus 424 it~~~-~~yLG----RPW~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 424 ITAES-MTYLG----RPWKEYSRTVVMQSFIDG 451 (529)
T ss_pred EecCC-ceeee----CCCCCCceEEEEecccCC
Confidence 77644 23332 112233456666666654
No 50
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.52 E-value=0.0061 Score=63.35 Aligned_cols=207 Identities=18% Similarity=0.178 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHHhcC----CCCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEE
Q 043757 50 NAQAFTETWAKACGS----GAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLL 125 (407)
Q Consensus 50 dt~aiq~Al~~a~~~----~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I 125 (407)
|-..||+||+++... .+.-+|+|.||+|. ..+.++. .+.+++|+++|. ....|
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~-E~V~i~~-~k~~i~l~G~g~---------------------~~TiI 317 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE-EYVSIPK-NKKYLMMIGDGI---------------------NQTVI 317 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE-EEEEecC-CCceEEEEecCC---------------------CCcEE
Confidence 467899998655432 12247999999998 3445531 124677777651 11111
Q ss_pred ecCe-EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEE
Q 043757 126 TGGG-TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNIT 199 (407)
Q Consensus 126 ~G~G-~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~ 199 (407)
.|.. ..+| |.. .+. .-.....+++..+|++|.|... .++-+ ...+...+.+|+|.
T Consensus 318 t~~~~~~~g-----~~T-------------~~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~ 378 (566)
T PLN02713 318 TGNRSVVDG-----WTT-------------FNS-ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFE 378 (566)
T ss_pred EcCCcccCC-----Ccc-------------ccc-eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeec
Confidence 1110 0011 100 011 2333456899999999998532 22332 24677888888888
Q ss_pred CCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ce-EEEecCCCCCCCCceEEEE
Q 043757 200 APDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HG-ISVGSLGNKPDEMDVNGIT 272 (407)
Q Consensus 200 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~ 272 (407)
+-.| -+.... ..-..++|.|...=|-| ++ .-.+.++||.+..- .+ |.-- ++ .+...-..+.
T Consensus 379 G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~G~v 446 (566)
T PLN02713 379 AYQD-----TLYTHS-LRQFYRECDIYGTVDFI-FG--NAAVVFQNCNLYPRLPMQGQFNTITAQ--GR-TDPNQNTGTS 446 (566)
T ss_pred cCCc-----ceEECC-CCEEEEeeEEeccccee-cc--cceEEEeccEEEEecCCCCCcceeeec--CC-CCCCCCCEEE
Confidence 7443 333332 35678888887765555 22 35778888887531 12 2211 11 0122345778
Q ss_pred EEeEEEeCCCeeE----EEEEecCCCCceEEeEEEEEEEEec
Q 043757 273 VFNCTLITTTNGL----RIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 273 i~n~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
|.||++....... ..+.+-|.....-..+.|.+..+.+
T Consensus 447 f~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~ 488 (566)
T PLN02713 447 IQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDG 488 (566)
T ss_pred EEcCEEecCCcccccccccceeeecCCCCcceEEEEecccCC
Confidence 8888888754210 1122222223344567777777765
No 51
>PLN02916 pectinesterase family protein
Probab=97.50 E-value=0.015 Score=59.23 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=101.6
Q ss_pred cHHHHHHHHHHHhc----CCCCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEE
Q 043757 50 NAQAFTETWAKACG----SGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLL 125 (407)
Q Consensus 50 dt~aiq~Al~~a~~----~~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I 125 (407)
|-..||+||+++.. ....-+|+|.||+|. ..+.++. .+.+++|+++|. +...|
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~-E~V~I~~-~k~~i~l~G~g~---------------------~~TiI 254 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAGVYN-EKVEIDR-HMKNVMFVGDGM---------------------DKTII 254 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCceee-EEEEecC-CCceEEEEecCC---------------------CCcEE
Confidence 46789999865542 122348999999998 3445541 124677777651 01111
Q ss_pred ecCe-EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEEe-eeeeEEEEeEEEE
Q 043757 126 TGGG-TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILLV-FCQNFTASNLNIT 199 (407)
Q Consensus 126 ~G~G-~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~ 199 (407)
.+.- .-+|.. . -...-.....+++..+|++|.|... .++-+. ..+...+.+|+|.
T Consensus 255 t~~~~~~~g~~-T------------------~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~ 315 (502)
T PLN02916 255 TNNRNVPDGST-T------------------YSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFK 315 (502)
T ss_pred EeCCccCCCCc-c------------------eeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEe
Confidence 1100 001100 0 0112344556788888888887532 222222 4566777777777
Q ss_pred CCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ce-EEEecCCCCCCCCceEEEE
Q 043757 200 APDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HG-ISVGSLGNKPDEMDVNGIT 272 (407)
Q Consensus 200 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~ 272 (407)
+-.| -+.... .+-..++|.|...=|-| ++ .-...++||.+..- .| |.-- ++ .....-..+.
T Consensus 316 G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avFq~C~I~~~~~~~~~~g~ITAq--~r-~~~~~~tGfv 383 (502)
T PLN02916 316 GYQD-----TLFVHS-LRQFYRDCHIYGTIDFI-FG--DAAVVFQNCDIFVRRPMDHQGNMITAQ--GR-DDPHENTGIS 383 (502)
T ss_pred ccCc-----eeEeCC-CCEEEEecEEeccccee-cc--CceEEEecCEEEEecCCCCCcceEEec--CC-CCCCCCcEEE
Confidence 6433 232222 24566777777655544 22 24666677766421 12 1111 11 0112234666
Q ss_pred EEeEEEeCCCeeE----EEEEecCCCCceEEeEEEEEEEEec
Q 043757 273 VFNCTLITTTNGL----RIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 273 i~n~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
|.||++....... ..+.+-|.....-+.+.|.+..+.+
T Consensus 384 f~~C~it~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t~~~~ 425 (502)
T PLN02916 384 IQHSRVRASPEFEAVKGRFKSFLGRPWKKYSRTVFLKTDLDG 425 (502)
T ss_pred EEeeEEecCccccccccccceEeecCCCCCceEEEEecccCC
Confidence 7777776643110 0112222223334556666666654
No 52
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.47 E-value=0.0053 Score=58.98 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 49 NNAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 49 ddt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
-|-..||+||+.+.... ..-+|+|.||+|. ..|.++. .+.+++|.+++
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G~Y~-E~V~i~~-~k~~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPGTYR-EKVTIPR-SKPNVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SEEEE---EEE-S-TSTTEEEEES-
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCeeEc-cccEecc-ccceEEEEecC
Confidence 35677999987544322 2348999999998 3455551 11467776664
No 53
>PLN02304 probable pectinesterase
Probab=97.45 E-value=0.016 Score=56.87 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
|-..||+||+++.... ..-+|+|.||+|. ..|.++. .+.+++|+++|
T Consensus 86 df~TIQ~AIdavP~~~~~r~vI~Ik~GvY~-EkV~Ip~-~K~~Itl~G~g 133 (379)
T PLN02304 86 NFTTVQSAVDAVGNFSQKRNVIWINSGIYY-EKVTVPK-TKPNITFQGQG 133 (379)
T ss_pred CccCHHHHHhhCcccCCCcEEEEEeCeEeE-EEEEECC-CCCcEEEEecC
Confidence 4678999986543322 2347999999997 3445531 12577777765
No 54
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.45 E-value=0.019 Score=59.01 Aligned_cols=207 Identities=16% Similarity=0.134 Sum_probs=102.9
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecC
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGG 128 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 128 (407)
|-..||+|++++.... ..-+|+|.||+|. ..+.++. .+.+++|+++|. +...|++.
T Consensus 217 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~-~k~~i~l~G~g~---------------------~~TiIt~~ 273 (520)
T PLN02201 217 NFTTIMDAVLAAPDYSTKRYVIYIKKGVYL-ENVEIKK-KKWNIMMVGDGI---------------------DATVITGN 273 (520)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCceeE-EEEEecC-CCceEEEEecCC---------------------CCcEEEeC
Confidence 5778999986543322 3458999999997 4455541 124677777651 01111110
Q ss_pred e-EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEEe-eeeeEEEEeEEEECCC
Q 043757 129 G-TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILLV-FCQNFTASNLNITAPD 202 (407)
Q Consensus 129 G-~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~ 202 (407)
. ..+| |.. -...-.....+++..+|++|.|... .++-+. ..+...+.+|+|.+..
T Consensus 274 ~~~~~g-----~~T--------------~~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q 334 (520)
T PLN02201 274 RSFIDG-----WTT--------------FRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ 334 (520)
T ss_pred CccCCC-----Ccc--------------cceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC
Confidence 0 0011 000 0112334557788888888887632 223332 3567777777777643
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ce-EEEecCCCCCCCCceEEEEEEe
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HG-ISVGSLGNKPDEMDVNGITVFN 275 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n 275 (407)
| -+.... .+-..++|.|...=|-| ++ .-...++||.+..- .| |.-- ++ .+...-....|.|
T Consensus 335 D-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~Gfvf~~ 402 (520)
T PLN02201 335 D-----TLYTHT-MRQFYRECRITGTVDFI-FG--DATAVFQNCQILAKKGLPNQKNTITAQ--GR-KDPNQPTGFSIQF 402 (520)
T ss_pred C-----eeEeCC-CCEEEEeeEEeecccEE-ec--CceEEEEccEEEEecCCCCCCceEEec--CC-CCCCCCcEEEEEe
Confidence 3 233222 23455777777655554 22 24567777766421 12 2211 11 0112234566777
Q ss_pred EEEeCCCeeE----EEEEecCCCCceEEeEEEEEEEEec
Q 043757 276 CTLITTTNGL----RIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 276 ~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
|++....... ..+.+-|.....-+.+.|.+..+.+
T Consensus 403 C~it~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~l~~ 441 (520)
T PLN02201 403 SNISADTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSD 441 (520)
T ss_pred eEEecCccccccccccceEeecCCCCCceEEEEecCcCC
Confidence 7776643110 0111122223344556666666654
No 55
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.43 E-value=0.027 Score=57.33 Aligned_cols=207 Identities=13% Similarity=0.064 Sum_probs=106.2
Q ss_pred ccHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee---EEEEecCCcCCCCCceEEEEeeeceE
Q 043757 49 NNAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG---IVKATTDLKEYADGDWILFENIDGLL 124 (407)
Q Consensus 49 ddt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G---~i~~~~~~~~~~~~~~i~~~~~~nv~ 124 (407)
-|-..||+||+++.... ..-+|+|.||+|.- .+.++. .+.+++|.++| ++.. .. .++
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~-~k~nItliGdg~~~TiIt--------------~n--~~~- 267 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDE-IVRIGS-TKPNLTLIGDGQDSTIIT--------------GN--LSA- 267 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCCeeEE-EEEecC-CCccEEEEecCCCceEEE--------------Ec--ccc-
Confidence 34677999986554322 23489999999983 445531 12577887775 2211 00 000
Q ss_pred EecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEEe-eeeeEEEEeEEEE
Q 043757 125 LTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILLV-FCQNFTASNLNIT 199 (407)
Q Consensus 125 I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~ 199 (407)
..|.+++ ...-.....+++..+|++|.|... .++-+. .++...+.+|+|.
T Consensus 268 ~~g~~T~-------------------------~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~ 322 (509)
T PLN02488 268 SNGKRTF-------------------------YTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIE 322 (509)
T ss_pred cCCCCce-------------------------eeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceee
Confidence 0110110 112333457778888888887532 233332 4577778888887
Q ss_pred CCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ceEEEecCCCCCCCCceEEEEE
Q 043757 200 APDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HGISVGSLGNKPDEMDVNGITV 273 (407)
Q Consensus 200 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i 273 (407)
+..| -+... +.+-..++|.|...=|-| ++ .-...++||.+..- .+ .|=..++ .+...-..+.|
T Consensus 323 GyQD-----TLy~~-~~RqyyrdC~I~GtVDFI-FG--~a~avFq~C~I~sr~~~~~~~~-~ITAq~R-~~~~~~tGfvf 391 (509)
T PLN02488 323 GYQD-----ALYPH-RDRQFYRECFITGTVDFI-CG--NAAAVFQFCQIVARQPMMGQSN-VITAQSR-ESKDDNSGFSI 391 (509)
T ss_pred ccCc-----ceeeC-CCCEEEEeeEEeeccceE-ec--ceEEEEEccEEEEecCCCCCCE-EEEeCCC-CCCCCCcEEEE
Confidence 6443 23222 235667777777755554 22 35677777777521 12 1211111 01122346777
Q ss_pred EeEEEeCCCeeE----EEEEecCCCCceEEeEEEEEEEEec
Q 043757 274 FNCTLITTTNGL----RIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 274 ~n~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
.||++....... ..+.+-|.....-+.+.|.+..+.+
T Consensus 392 ~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~ 432 (509)
T PLN02488 392 QKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGD 432 (509)
T ss_pred EeeEEecCCcccccccccceeecCCCCCCccEEEEeccCCC
Confidence 777777654211 1122223223344555666666554
No 56
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.42 E-value=0.027 Score=58.69 Aligned_cols=210 Identities=14% Similarity=0.133 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEec-
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTG- 127 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G- 127 (407)
|-..||+|++.+.... ..-+|+|.||+|.- .+.++. .+.+++|+++|.= ...|... .+... |
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~-~k~~i~l~G~g~~-----------~TiIt~~--~~~~~-g~ 333 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQGVYNE-KVDVTK-KMTHVTFIGDGPT-----------KTKITGS--LNFYI-GK 333 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCceeEE-EEEecC-CCCcEEEEecCCC-----------ceEEEec--cccCC-CC
Confidence 4677999986543322 23489999999984 445541 1257788777610 0001110 11100 1
Q ss_pred CeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEEe-eeeeEEEEeEEEECCC
Q 043757 128 GGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILLV-FCQNFTASNLNITAPD 202 (407)
Q Consensus 128 ~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~ 202 (407)
.+++ ...-.....+++..+|++|.|... .++-+. ..+...+.+|+|.+..
T Consensus 334 ~~T~-------------------------~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q 388 (572)
T PLN02990 334 VKTY-------------------------LTATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ 388 (572)
T ss_pred ccce-------------------------eeeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc
Confidence 0110 112233457888999999988643 233332 4677888888888744
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC---ce--EEEecCCCCCCCCceEEEEEEeEE
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG---HG--ISVGSLGNKPDEMDVNGITVFNCT 277 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~ 277 (407)
| -+... +.+-..++|.|...=|-| ++ .-...++||.+..- .| -.|=..++. +...-..+.|.||+
T Consensus 389 D-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~C~ 458 (572)
T PLN02990 389 D-----TLYVH-SHRQFFRDCTVSGTVDFI-FG--DAKVVLQNCNIVVRKPMKGQSCMITAQGRS-DVRESTGLVLQNCH 458 (572)
T ss_pred c-----hhccC-CCcEEEEeeEEecccceE-cc--CceEEEEccEEEEecCCCCCceEEEeCCCC-CCCCCceEEEEeeE
Confidence 3 22222 234566888887765555 22 24677788877521 11 122111110 12233567788888
Q ss_pred EeCCCeeEE----EEEecCCCCceEEeEEEEEEEEec
Q 043757 278 LITTTNGLR----IKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 278 ~~~~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
+........ .+.+-|.....-+.+.|.+..+.+
T Consensus 459 it~~~~~~~~~~~~~~yLGRpW~~ysrvV~~~s~i~~ 495 (572)
T PLN02990 459 ITGEPAYIPVKSINKAYLGRPWKEFSRTIIMGTTIDD 495 (572)
T ss_pred EecCccccccccccceEeecCCCCCceEEEEecccCC
Confidence 877542110 111222223334566677766655
No 57
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.40 E-value=0.0029 Score=57.19 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=76.6
Q ss_pred eEEe-ccCcEEEEeeEEEc---------------CCCceEEEeeeeeEEEEeEEEECCCC---CCCCce-EEcc-CceeE
Q 043757 160 IKFN-HVNNSVVTGINSLN---------------SKGFHILLVFCQNFTASNLNITAPDE---SPNTDG-IHLS-LSSLV 218 (407)
Q Consensus 160 i~~~-~~~nv~I~~v~i~n---------------~~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DG-i~~~-~s~nv 218 (407)
+.+. .++||.|++++|+. ....++.+..+++|-|++|++..... ....|| +++. .+.+|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 4444 89999999999998 24467999999999999999997511 112455 6765 58999
Q ss_pred EEEeeEEecCCceEEecCC-------ceeEEEEeEEEcCCce--EEEecCCCCCCCCceEEEEEEeEEEeC-CCeeEEEE
Q 043757 219 NITNSKIGTGDDCVSIGHG-------STDISVSRITCGPGHG--ISVGSLGNKPDEMDVNGITVFNCTLIT-TTNGLRIK 288 (407)
Q Consensus 219 ~I~n~~i~~~dD~i~i~s~-------s~nI~I~n~~~~~~~g--i~igs~~~~~~~~~v~ni~i~n~~~~~-~~~gi~i~ 288 (407)
+|.+|.|...+.+..+++. ..+|++.+|.+.+..+ =.+ ..-.+++-|+.+.+ ..+++...
T Consensus 119 TiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~----------r~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV----------RFGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp EEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE----------CSCEEEEES-EEEEECSESEEEE
T ss_pred EEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc----------cccEEEEEEeeeECCCCEEEEcc
Confidence 9999999875544444431 3689999998864321 111 11247788887765 56677663
No 58
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.35 E-value=0.015 Score=60.25 Aligned_cols=207 Identities=18% Similarity=0.166 Sum_probs=112.0
Q ss_pred cHHHHHHHHHHHhcCC----CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEE
Q 043757 50 NAQAFTETWAKACGSG----APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLL 125 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~----~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I 125 (407)
+-..||+||+++.... +.-+|+|.+|+|. ..|.++. .+.+++|+++|. +...|
T Consensus 234 ~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~-E~V~i~~-~k~~i~l~G~g~---------------------~~tiI 290 (538)
T PLN03043 234 NFTTITDAIAAAPNNSKPEDGYFVIYAREGYYE-EYVVVPK-NKKNIMLIGDGI---------------------NKTII 290 (538)
T ss_pred CCcCHHHHHHhccccCCCCcceEEEEEcCeeeE-EEEEeCC-CCCcEEEEecCC---------------------CCeEE
Confidence 4778999986543322 1238999999997 3444431 125777777751 11111
Q ss_pred ecCe-EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEE
Q 043757 126 TGGG-TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNIT 199 (407)
Q Consensus 126 ~G~G-~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~ 199 (407)
.|.- ..|| |.. -...-.....+++..+|++|+|... .++-+ ...+...+.+|+|.
T Consensus 291 t~~~~~~dg-----~~T--------------~~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~ 351 (538)
T PLN03043 291 TGNHSVVDG-----WTT--------------FNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFE 351 (538)
T ss_pred EeCCccCCC-----Ccc--------------ccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEe
Confidence 1110 0111 110 0112344557889999999998532 23333 24677888888888
Q ss_pred CCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ce-EEEecCCCCCCCCceEEEE
Q 043757 200 APDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HG-ISVGSLGNKPDEMDVNGIT 272 (407)
Q Consensus 200 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~ 272 (407)
+..| -+... +.+-..++|.|...=|-| ++ .-...++||.+..- .+ |.-- ++ .+...-..+.
T Consensus 352 gyQD-----TLy~~-~~rq~y~~c~I~GtVDFI-FG--~a~avfq~c~i~~r~~~~~~~~~iTA~--~r-~~~~~~tG~~ 419 (538)
T PLN03043 352 GYQD-----TLYVH-SLRQFYRECDIYGTVDFI-FG--NAAAIFQNCNLYARKPMANQKNAFTAQ--GR-TDPNQNTGIS 419 (538)
T ss_pred ccCc-----ccccC-CCcEEEEeeEEeeccceE-ee--cceeeeeccEEEEecCCCCCCceEEec--CC-CCCCCCceEE
Confidence 7544 22222 235677888888765655 22 34778888877531 12 2221 11 1223335678
Q ss_pred EEeEEEeCCCeeE----EEEEecCCCCceEEeEEEEEEEEec
Q 043757 273 VFNCTLITTTNGL----RIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 273 i~n~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
|.||++.....-. ..+++-|.....-+.+.|.+..+.+
T Consensus 420 ~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~ 461 (538)
T PLN03043 420 IINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGD 461 (538)
T ss_pred EEecEEecCCcccccccccceeccCCCCCCceEEEEecccCC
Confidence 8888888754210 1122223223445667777777665
No 59
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.35 E-value=0.028 Score=58.14 Aligned_cols=210 Identities=15% Similarity=0.142 Sum_probs=110.4
Q ss_pred cHHHHHHHHHHHhc---CCCCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEe
Q 043757 50 NAQAFTETWAKACG---SGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLT 126 (407)
Q Consensus 50 dt~aiq~Al~~a~~---~~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~ 126 (407)
|-..||+|++.+.. ....-+|+|.||+|.-. +.++. .+.+++|+++|. +...|.
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~-~k~~i~l~G~g~---------------------~~TvIt 290 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRL-NNDDIMLVGDGM---------------------RSTIIT 290 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecC-CCCcEEEEEcCC---------------------CCeEEE
Confidence 47789999875432 22345899999999843 44431 125788877761 011111
Q ss_pred cCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEEe-eeeeEEEEeEEEECC
Q 043757 127 GGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILLV-FCQNFTASNLNITAP 201 (407)
Q Consensus 127 G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~ 201 (407)
|.-.. +.+ |-. -...-.....+++..+|++|.|... .++-+. ..+...+.+|+|.+-
T Consensus 291 ~~~~~-~~~--~~T---------------~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~ 352 (539)
T PLN02995 291 GGRSV-KGG--YTT---------------YNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGY 352 (539)
T ss_pred eCCcc-CCC--Ccc---------------cceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecc
Confidence 10000 000 000 0112233457788889999988542 233332 467788888888875
Q ss_pred CCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ceEEEecCCCCCCCCceEEEEEEe
Q 043757 202 DESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HGISVGSLGNKPDEMDVNGITVFN 275 (407)
Q Consensus 202 ~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i~n 275 (407)
.| -+.... .+-..++|.|...=|-| ++ .....++||++..- .| .|=..++ .....-..+.|.|
T Consensus 353 QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~~ 421 (539)
T PLN02995 353 QD-----TLMVHS-QRQFYRECYIYGTVDFI-FG--NAAAVFQNCIILPRRPLKGQAN-VITAQGR-ADPFQNTGISIHN 421 (539)
T ss_pred cc-----hhccCC-CceEEEeeEEeeccceE-ec--ccceEEeccEEEEecCCCCCcc-eEecCCC-CCCCCCceEEEEe
Confidence 44 222222 34577888887765555 22 24677777777531 12 1211111 0122335778888
Q ss_pred EEEeCCCeeE----EEEEecCCCCceEEeEEEEEEEEecC
Q 043757 276 CTLITTTNGL----RIKTKRGSASLKASRIFYENIIMDKV 311 (407)
Q Consensus 276 ~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~ 311 (407)
|++....... ..+.+-|.....-..+.|.+..+.+.
T Consensus 422 c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~ 461 (539)
T PLN02995 422 SRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNV 461 (539)
T ss_pred eEEecCCcccccccccceeccCCCCCCcceEEEeccccCc
Confidence 8888754211 11222232234445677777777653
No 60
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.34 E-value=0.017 Score=59.73 Aligned_cols=205 Identities=15% Similarity=0.168 Sum_probs=103.5
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecC
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGG 128 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 128 (407)
|-..||+||+++.... +.-+|+|.||+|.-. +.++. .+.+++|+++|. +...|.+.
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~-V~I~~-~k~~i~l~G~g~---------------------~~tiIt~~ 299 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKGVYKEN-IDMKK-KKTNIMLVGDGI---------------------GQTVVTGN 299 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCeeeEE-EeccC-CCceEEEEEcCC---------------------CCeEEEeC
Confidence 4678999986544322 335899999999743 33321 125677766641 11111110
Q ss_pred eEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEECCCC
Q 043757 129 GTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNITAPDE 203 (407)
Q Consensus 129 G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~~~~~ 203 (407)
... .+| |.. -...-.....+++..+|++|.|... .++-+ ...+...+.+|+|.+..|
T Consensus 300 ~~~-~~g---~~T--------------~~saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QD 361 (537)
T PLN02506 300 RNF-MQG---WTT--------------FRTATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQD 361 (537)
T ss_pred ccc-cCC---CCc--------------ccceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccc
Confidence 000 000 000 0112345568888999999988632 22222 246777778887776443
Q ss_pred CCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC-----ceEEEecCCCCCCCCceEEEEEEeEEE
Q 043757 204 SPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG-----HGISVGSLGNKPDEMDVNGITVFNCTL 278 (407)
Q Consensus 204 ~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~-----~gi~igs~~~~~~~~~v~ni~i~n~~~ 278 (407)
-+.... .+-..++|.|...=|-| ++ .-...++||.+..- ..-.|=..++. ....-..+.|.||++
T Consensus 362 -----TLy~~~-~rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~r~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i 431 (537)
T PLN02506 362 -----TLYAHS-LRQFYRECEIYGTIDFI-FG--NGAAVLQNCKIYTRVPLPLQKVTITAQGRK-SPHQSTGFSIQDSYV 431 (537)
T ss_pred -----cceecC-CceEEEeeEEecccceE-cc--CceeEEeccEEEEccCCCCCCceEEccCCC-CCCCCcEEEEEcCEE
Confidence 222222 34567777777755554 22 24577777776521 11111111110 112234677777777
Q ss_pred eCCCeeEEEEEecCCCCceEEeEEEEEEEEec
Q 043757 279 ITTTNGLRIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 279 ~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
.... ..+++ ...+.-..+.|.+..+.+
T Consensus 432 ~~~~-~~yLG----RPW~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 432 LATQ-PTYLG----RPWKQYSRTVFMNTYMSQ 458 (537)
T ss_pred ccCC-ceEEe----cCCCCCceEEEEecCCCC
Confidence 6543 33332 112333556666666654
No 61
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.33 E-value=0.018 Score=59.90 Aligned_cols=207 Identities=14% Similarity=0.150 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecC
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGG 128 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 128 (407)
+-..||+||+++.... ..-+|+|.||+|. ..+.++. .+.+++|+++|. +...|.|.
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~-E~V~i~~-~k~~i~~~G~g~---------------------~~tiIt~~ 325 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKGVYF-ENVRVEK-KKWNVVMVGDGM---------------------SKTIVSGS 325 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCceE-EEEEecC-CCCeEEEEecCC---------------------CCCEEEeC
Confidence 4678999986554322 3459999999997 3445531 124677777651 01111110
Q ss_pred e-EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEECCC
Q 043757 129 G-TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNITAPD 202 (407)
Q Consensus 129 G-~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~~~~ 202 (407)
. ..||.. . | +. .-.....+++..++++|.|... .++-+ ...+...+.+|+|.+..
T Consensus 326 ~~~~dg~~-t-~----------------~s-aT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q 386 (565)
T PLN02468 326 LNFVDGTP-T-F----------------ST-ATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ 386 (565)
T ss_pred CccCCCCC-c-c----------------ce-eeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc
Confidence 0 001110 0 0 11 1233456789999999988533 22333 35688888899888754
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ce-EEEecCCCCCCCCceEEEEEEe
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HG-ISVGSLGNKPDEMDVNGITVFN 275 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n 275 (407)
| -+.... ..-..++|.|...=|-| ++ .-...++||.+..- .+ |.- .++ .+...-..+.|.|
T Consensus 387 D-----TLy~~~-~rq~y~~C~I~GtvDFI-FG--~a~avfq~c~i~~~~~~~~~~~~iTA--~~r-~~~~~~~G~vf~~ 454 (565)
T PLN02468 387 D-----TLYAHA-QRQFYRECNIYGTVDFI-FG--NSAVVFQNCNILPRRPMKGQQNTITA--QGR-TDPNQNTGISIQN 454 (565)
T ss_pred c-----hhccCC-CceEEEeeEEeccccee-ec--cceEEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCceEEEEc
Confidence 4 222222 34568888888765655 22 35778888887521 12 222 111 1223345788888
Q ss_pred EEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEec
Q 043757 276 CTLITTTNGLRIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 276 ~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
|++......-..+.+-|.....-+.+.|.+..+.+
T Consensus 455 c~i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~ 489 (565)
T PLN02468 455 CTILPLGDLTSVKTFLGRPWKNYSTTVIMHSMMGS 489 (565)
T ss_pred cEEecCCCccccceeeecCCCCCceEEEEecccCC
Confidence 88887542112222222223444556777777665
No 62
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.33 E-value=0.036 Score=57.05 Aligned_cols=208 Identities=14% Similarity=0.145 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecC
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGG 128 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 128 (407)
|-..||+||+++.... ..-+|+|.||+|. ..+.++. .+.+++|+++|. +...|.+.
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~-~k~~itl~G~g~---------------------~~TiIt~~ 285 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGGEYF-ENVELPK-KKTMIMFIGDGI---------------------GKTVIKAN 285 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCceEE-EEEEecC-CCceEEEEEcCC---------------------CCcEEEeC
Confidence 4678999986543322 2348999999998 4455541 124677777651 01111110
Q ss_pred e-EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEEe-eeeeEEEEeEEEECCC
Q 043757 129 G-TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILLV-FCQNFTASNLNITAPD 202 (407)
Q Consensus 129 G-~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~ 202 (407)
. ..+| |.. -...-.....+++..+|++|.|... .++-+. ..+...+.+|+|.+..
T Consensus 286 ~~~~dg-----~~T--------------~~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q 346 (530)
T PLN02933 286 RSRIDG-----WST--------------FQTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ 346 (530)
T ss_pred CccCCC-----Ccc--------------ccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc
Confidence 0 0011 100 0112344557788888999887532 223332 4577777777777644
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ceEEEecCCCCCCCCceEEEEEEeE
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HGISVGSLGNKPDEMDVNGITVFNC 276 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i~n~ 276 (407)
| -+.... .+-..++|.|...=|-| ++ .....++||.+..- .+ .|=..++ .....-..+.|.||
T Consensus 347 D-----TLy~~~-~Rqyy~~C~IeGtVDFI-FG--~a~avFq~C~i~~~~~~~~~~~-~iTAq~r-~~~~~~tGfvf~~C 415 (530)
T PLN02933 347 D-----TLYVHS-AKQFYRECDIYGTIDFI-FG--NAAVVFQNCSLYARKPNPNHKI-AFTAQSR-NQSDQPTGISIISS 415 (530)
T ss_pred c-----ccccCC-CceEEEeeEEeccccee-cc--CceEEEeccEEEEeccCCCCce-EEEecCC-CCCCCCceEEEEee
Confidence 3 222222 24467777777655544 22 24566777766421 12 1111111 01122346777777
Q ss_pred EEeCCCeeEE----EEEecCCCCceEEeEEEEEEEEec
Q 043757 277 TLITTTNGLR----IKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 277 ~~~~~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
++........ .+.+-|.....-..+.|.+..+.+
T Consensus 416 ~it~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~s~l~~ 453 (530)
T PLN02933 416 RILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDD 453 (530)
T ss_pred EEecCCcccccccccceEeccCCCCCceEEEEecccCC
Confidence 7776431100 111222223334566666666655
No 63
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.30 E-value=0.024 Score=59.32 Aligned_cols=208 Identities=15% Similarity=0.145 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecC
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGG 128 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 128 (407)
|-..||+||+++.... ..-+|+|.+|+|.-..+.++. .+.+++|+++|. +...|+|.
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~-~k~ni~l~G~g~---------------------~~TiIt~~ 340 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGR-KKTNLMFIGDGK---------------------GKTVITGG 340 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECC-CCceEEEEecCC---------------------CCeEEecC
Confidence 4678999986543322 235889999999864455541 124677766651 11111110
Q ss_pred e-EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEEe-eeeeEEEEeEEEECCC
Q 043757 129 G-TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILLV-FCQNFTASNLNITAPD 202 (407)
Q Consensus 129 G-~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~ 202 (407)
- ..++.+ .+ ...-.....+++..+|++|.|... .++-+. ..+...+.+|+|....
T Consensus 341 ~~~~~~~~-t~------------------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q 401 (587)
T PLN02484 341 KSIFDNLT-TF------------------HTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ 401 (587)
T ss_pred CcccCCCc-cc------------------ceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC
Confidence 0 000000 00 112344457788888888887532 233332 4677788888888744
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ce-EEEecCCCCCCCCceEEEEEEe
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HG-ISVGSLGNKPDEMDVNGITVFN 275 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n 275 (407)
| -+... +..-..++|.|...=|-| ++ .-...++||.+..- .| |.-- ++ .+...-..+.|.|
T Consensus 402 D-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~~~~~~~~~~~ITAq--~r-~~~~~~~G~vf~~ 469 (587)
T PLN02484 402 D-----TLYVH-SNRQFFRECDIYGTVDFI-FG--NAAVVLQNCSIYARKPMAQQKNTITAQ--NR-KDPNQNTGISIHA 469 (587)
T ss_pred c-----ccccC-CCcEEEEecEEEecccee-cc--cceeEEeccEEEEecCCCCCceEEEec--CC-CCCCCCcEEEEEe
Confidence 3 22222 234567777777755554 22 34677777777521 12 2211 11 0122335677888
Q ss_pred EEEeCCCee----EEEEEecCCCCceEEeEEEEEEEEec
Q 043757 276 CTLITTTNG----LRIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 276 ~~~~~~~~g----i~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
|++.....- -.++.+-|.....-..+.|.+..|.+
T Consensus 470 c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~ 508 (587)
T PLN02484 470 CRILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGD 508 (587)
T ss_pred eEEecCCccccccCccceeccCCCCCCceEEEEecccCC
Confidence 887764321 01122223333445566677666655
No 64
>PLN02197 pectinesterase
Probab=97.27 E-value=0.027 Score=58.76 Aligned_cols=212 Identities=14% Similarity=0.086 Sum_probs=111.6
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEE-ec
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLL-TG 127 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I-~G 127 (407)
|-..||+|++++.... ..-+|+|.||+|. ..+.++. .+.+++|+++|.= ...|... .++.. .|
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~-~k~ni~l~G~g~~-----------~TiIt~~--~~~~~~~g 350 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAGIYN-EQVTIPK-KKNNIFMFGDGAR-----------KTVISYN--RSVKLSPG 350 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCceEE-EEEEccC-CCceEEEEEcCCC-----------CeEEEec--cccccCCC
Confidence 4678999986543322 2237999999998 3444541 1256777777510 0001111 11100 11
Q ss_pred CeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEEe-eeeeEEEEeEEEECCC
Q 043757 128 GGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILLV-FCQNFTASNLNITAPD 202 (407)
Q Consensus 128 ~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~ 202 (407)
.++ -...-.....+++..+|++|.|... .++-+. ..+...+.+|+|.+..
T Consensus 351 ~~T-------------------------~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ 405 (588)
T PLN02197 351 TTT-------------------------SLSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ 405 (588)
T ss_pred Ccc-------------------------cceeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC
Confidence 000 0112344468889999999998532 233332 4678888888888744
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC---ce--EEEecCCCCCCCCceEEEEEEeEE
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG---HG--ISVGSLGNKPDEMDVNGITVFNCT 277 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~ 277 (407)
| -+.... .+-..++|.|...=|-| ++ .....++||.+... .| -.|-..++......-..+.|.||+
T Consensus 406 D-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~ 476 (588)
T PLN02197 406 D-----TLYVNN-GRQFYRNIVVSGTVDFI-FG--KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCR 476 (588)
T ss_pred c-----ceEecC-CCEEEEeeEEEeccccc-cc--ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccE
Confidence 3 233322 34577888888765554 22 23577888877521 11 122111111001233567888888
Q ss_pred EeCCCee----EEEEEecCCCCceEEeEEEEEEEEec
Q 043757 278 LITTTNG----LRIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 278 ~~~~~~g----i~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
+.....- ...+++-|.....-..+.|.+..+.+
T Consensus 477 it~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~ 513 (588)
T PLN02197 477 IVPDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGD 513 (588)
T ss_pred EecCCcccccccccccccCCCCCCCceEEEEecccCC
Confidence 8875421 11223333333445667777777655
No 65
>PLN02432 putative pectinesterase
Probab=97.26 E-value=0.046 Score=52.16 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
|-..||+||+.+.... ..-+|+|.||+|. ..|.++. .+.+++|.+++
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~-E~V~ip~-~k~~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPGIYR-EKVVVPA-DKPFITLSGTQ 69 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCceeE-EEEEEec-cCceEEEEEcC
Confidence 4778999987554322 2347999999996 3344531 11456666553
No 66
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.26 E-value=0.028 Score=58.17 Aligned_cols=207 Identities=17% Similarity=0.193 Sum_probs=107.5
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecC
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGG 128 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 128 (407)
|-..||+|++++.... ..-+|+|.||+|.- .+.++. .+.+++|+++|. +...|+|.
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E-~V~i~~-~k~~i~l~G~g~---------------------~~TiIt~~ 303 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKGTYKE-NVEIGK-KKKNLMLVGDGM---------------------DSTIITGS 303 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCceeeE-EEEecC-CCceEEEEecCC---------------------CCcEEEeC
Confidence 4778999987554432 22489999999973 444431 125677777651 01111110
Q ss_pred e-EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEECCC
Q 043757 129 G-TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNITAPD 202 (407)
Q Consensus 129 G-~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~~~~ 202 (407)
. ..||.+ . + ...-.....+++..+|++|.|... .++-+ ..++...+.+|+|.+..
T Consensus 304 ~~~~dg~~-T-~-----------------~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q 364 (548)
T PLN02301 304 LNVIDGST-T-F-----------------RSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ 364 (548)
T ss_pred CccCCCCC-c-e-----------------eeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc
Confidence 0 001110 0 0 112344457888889999988532 22322 24677788888888744
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ce-EEEecCCCCCCCCceEEEEEEe
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HG-ISVGSLGNKPDEMDVNGITVFN 275 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n 275 (407)
| -+.... .+-..++|.|...=|-| ++ .-...++||.+..- .+ |.- .++ .+...-..+.|.|
T Consensus 365 D-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~c~i~~~~~~~~~~~~iTA--qgr-~~~~~~tG~vf~~ 432 (548)
T PLN02301 365 D-----TLYAHS-LRQFYRDSYITGTVDFI-FG--NAAVVFQNCKIVARKPMAGQKNMVTA--QGR-TDPNQNTGISIQK 432 (548)
T ss_pred c-----cceecC-CcEEEEeeEEEecccee-cc--cceeEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCCEEEEEe
Confidence 3 222222 34577778877755554 22 34677777776421 12 222 111 0122345677888
Q ss_pred EEEeCCCeeE----EEEEecCCCCceEEeEEEEEEEEec
Q 043757 276 CTLITTTNGL----RIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 276 ~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
|++.....-. ..+.+-|.....-+.+.|.+..+.+
T Consensus 433 c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~ 471 (548)
T PLN02301 433 CDIIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDD 471 (548)
T ss_pred eEEecCccccccccccceeeecCCCCCceEEEEecccCC
Confidence 8877654211 1122223233444556666666654
No 67
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.25 E-value=0.018 Score=59.57 Aligned_cols=209 Identities=17% Similarity=0.179 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecC
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGG 128 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 128 (407)
|-..||+||+++.... ..-+|+|.||+|. ..+.++. .+.+++|.++|. +...|.|.
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~-E~V~i~~-~k~~i~l~G~g~---------------------~~TiIt~~ 297 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREGVYE-ENVEIPI-YKTNIVLIGDGS---------------------DVTFITGN 297 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCceeE-EEEecCC-CCccEEEEecCC---------------------CceEEeCC
Confidence 4678999986544322 2347899999997 3344431 125677777651 01111110
Q ss_pred e-EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEECCC
Q 043757 129 G-TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNITAPD 202 (407)
Q Consensus 129 G-~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~~~~ 202 (407)
. ..+| |.. .+. .-.....+++..+|++|.|... .++-+ ...+...+.+|+|.+..
T Consensus 298 ~~~~~g-----~~T-------------~~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q 358 (541)
T PLN02416 298 RSVVDG-----WTT-------------FRS-ATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQ 358 (541)
T ss_pred CccCCC-----CCc-------------cce-EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEeccc
Confidence 0 0011 100 011 2233447888999999988533 12222 24577777777777644
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC---ce--EEEecCCCCCCCCceEEEEEEeEE
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG---HG--ISVGSLGNKPDEMDVNGITVFNCT 277 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~ 277 (407)
| -+... +.+-..++|.|...=|-| ++ .-...++||++..- .| -.|=..++ .....-....|.||+
T Consensus 359 D-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avfq~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~ 428 (541)
T PLN02416 359 D-----TLYVH-SFRQFYRECDIYGTIDYI-FG--NAAVVFQACNIVSKMPMPGQFTVITAQSR-DTPDEDTGISIQNCS 428 (541)
T ss_pred c-----hhccC-CCceEEEeeEEeecccee-ec--cceEEEeccEEEEecCCCCCceEEECCCC-CCCCCCCEEEEEeeE
Confidence 3 12222 234567777777655554 22 24667777766421 11 11111110 011223466777777
Q ss_pred EeCCCeeE----EEEEecCCCCceEEeEEEEEEEEec
Q 043757 278 LITTTNGL----RIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 278 ~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
+.....-. ..+.+-|.....-..+.|.+..+.+
T Consensus 429 i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~ 465 (541)
T PLN02416 429 ILATEDLYSNSNSVKSYLGRPWRVYSRTVVLESYIDD 465 (541)
T ss_pred EecCCccccccccccccccCCCCCCccEEEEecccCC
Confidence 77643210 1222222223344556666666654
No 68
>PLN02671 pectinesterase
Probab=97.24 E-value=0.055 Score=52.95 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
|-..||+||+.+.... ..-+|+|.||+|. ..|.++. .+.+++|+++|
T Consensus 70 df~TIQ~AIdavP~~~~~~~~I~Ik~GvY~-EkV~I~~-~k~~Itl~G~g 117 (359)
T PLN02671 70 DSLTVQGAVDMVPDYNSQRVKIYILPGIYR-EKVLVPK-SKPYISFIGNE 117 (359)
T ss_pred CccCHHHHHHhchhcCCccEEEEEeCceEE-EEEEECC-CCCeEEEEecC
Confidence 4778999987554322 2348999999998 3344531 12567776654
No 69
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.24 E-value=0.039 Score=57.76 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=111.5
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEee---EEEEecCCcCCCCCceEEEEeeeceEE
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG---IVKATTDLKEYADGDWILFENIDGLLL 125 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G---~i~~~~~~~~~~~~~~i~~~~~~nv~I 125 (407)
|-..||+||+++.... ..-+|+|.+|+|.- .+.++. .+.+++|+++| ++.. .. .+. .
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~-~k~~i~l~G~g~~~TiIt--------------~~--~~~-~ 356 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYDE-TVTVDK-KMVNVTMYGDGSQKTIVT--------------GN--KNF-A 356 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeEE-EEEEcC-CCceEEEEecCCCceEEE--------------EC--Ccc-c
Confidence 4678999986543322 23479999999984 345541 12467777775 2211 00 000 0
Q ss_pred ecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEEC
Q 043757 126 TGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNITA 200 (407)
Q Consensus 126 ~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~~ 200 (407)
.|.++. ...-.....+++..+|++|.|... .++-+ ..++...+.+|+|.+
T Consensus 357 ~g~~T~-------------------------~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G 411 (596)
T PLN02745 357 DGVRTF-------------------------RTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEG 411 (596)
T ss_pred CCCcce-------------------------eeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEee
Confidence 110110 112333467889999999998532 22333 246888888888887
Q ss_pred CCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ce-EEEecCCCCCCCCceEEEEE
Q 043757 201 PDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HG-ISVGSLGNKPDEMDVNGITV 273 (407)
Q Consensus 201 ~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i 273 (407)
..| -+... ..+-..++|.|...=|-| ++ .....++||.+..- .| |.-- ++ .+...-..+.|
T Consensus 412 ~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~Gfvf 479 (596)
T PLN02745 412 YQD-----TLYAQ-THRQFYRSCVITGTIDFI-FG--DAAAIFQNCLIFVRKPLPNQQNTVTAQ--GR-VDKFETTGIVL 479 (596)
T ss_pred ccc-----ccccC-CCcEEEEeeEEEeeccEE-ec--ceeEEEEecEEEEecCCCCCCceEEec--CC-CCCCCCceEEE
Confidence 544 22222 235678888888765544 33 35778888877531 12 2211 11 01223457788
Q ss_pred EeEEEeCCCeeE----EEEEecCCCCceEEeEEEEEEEEec
Q 043757 274 FNCTLITTTNGL----RIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 274 ~n~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
.||++....... ..+.+-|.....-+.+.|.+..+.+
T Consensus 480 ~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~ 520 (596)
T PLN02745 480 QNCRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIED 520 (596)
T ss_pred EeeEEecCccccccccccceeccCCCCCCccEEEEecccCC
Confidence 888888754211 1122333333445667777777665
No 70
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.23 E-value=0.071 Score=52.35 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=88.7
Q ss_pred EeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCce-eeE-eeeEeecCCCCceEEEEee-EEEEecCCcCCCCC
Q 043757 36 DVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGT-FLT-GPVVFSGPCKSAITVEVRG-IVKATTDLKEYADG 112 (407)
Q Consensus 36 ~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~-Y~~-~~l~l~~~~~s~vtl~~~G-~i~~~~~~~~~~~~ 112 (407)
.|+.|-..++. | +.+||.+- ..|.+-||. |.+ +++.++ +..+|.+.| +++......
T Consensus 45 qvkt~~~~P~e--D----le~~I~~h------aKVaL~Pg~~Y~i~~~V~I~----~~cYIiGnGA~V~v~~~~~----- 103 (386)
T PF01696_consen 45 QVKTYWMEPGE--D----LEEAIRQH------AKVALRPGAVYVIRKPVNIR----SCCYIIGNGATVRVNGPDR----- 103 (386)
T ss_pred eEEEEEcCCCc--C----HHHHHHhc------CEEEeCCCCEEEEeeeEEec----ceEEEECCCEEEEEeCCCC-----
Confidence 45566655554 4 34443221 488998886 998 589999 788888886 444321110
Q ss_pred ceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCC-CceEEEeeeeeE
Q 043757 113 DWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSK-GFHILLVFCQNF 191 (407)
Q Consensus 113 ~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~-~~~i~~~~~~nv 191 (407)
.. +.+.- + ...| .+.+-.++++.|+.|...+ .-++.+....++
T Consensus 104 ~~--------f~v~~--------~-----------------~~~P---~V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~ 147 (386)
T PF01696_consen 104 VA--------FRVCM--------Q-----------------SMGP---GVVGMEGVTFVNIRFEGRDTFSGVVFHANTNT 147 (386)
T ss_pred ce--------EEEEc--------C-----------------CCCC---eEeeeeeeEEEEEEEecCCccceeEEEecceE
Confidence 00 11111 0 0012 2344556777777776655 456666677777
Q ss_pred EEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCc-eE
Q 043757 192 TASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGH-GI 254 (407)
Q Consensus 192 ~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~-gi 254 (407)
.+.+|.+.+.. |.-+.......|++|.|..-.-||.-. +...+.|++|.|+... |+
T Consensus 148 ~~hgC~F~gf~------g~cl~~~~~~~VrGC~F~~C~~gi~~~-~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 148 LFHGCSFFGFH------GTCLESWAGGEVRGCTFYGCWKGIVSR-GKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred EEEeeEEecCc------ceeEEEcCCcEEeeeEEEEEEEEeecC-CcceEEeeheeeeheEEEE
Confidence 77777777632 233333346777777776655455322 2456777777776553 55
No 71
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.16 E-value=0.038 Score=58.37 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=86.7
Q ss_pred EEeccCcEEEEeeEEEcCCC----ceEEEe-eeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEec
Q 043757 161 KFNHVNNSVVTGINSLNSKG----FHILLV-FCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIG 235 (407)
Q Consensus 161 ~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~ 235 (407)
.....+++..+|++|.|... .++-+. ..+...+.+|+|.+..| -+.... .+-..++|.|...=|-| ++
T Consensus 332 ~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG 404 (670)
T PLN02217 332 VAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQD-----TLYAHS-HRQFYRDCTISGTIDFL-FG 404 (670)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccc-----hhccCC-CcEEEEeCEEEEeccEE-ec
Confidence 34458899999999998643 233333 57899999999998544 233222 46688999999866665 33
Q ss_pred CCceeEEEEeEEEcCC-----ceEEEecCCCCCCCCceEEEEEEeEEEeCCCeeE----EEEEecCCCCceEEeEEEEEE
Q 043757 236 HGSTDISVSRITCGPG-----HGISVGSLGNKPDEMDVNGITVFNCTLITTTNGL----RIKTKRGSASLKASRIFYENI 306 (407)
Q Consensus 236 s~s~nI~I~n~~~~~~-----~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni 306 (407)
.....++||.+..- ..-.|-..++ .+...-..+.|.||++.....-+ ..+.+-|.....-..+.|.+.
T Consensus 405 --~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t 481 (670)
T PLN02217 405 --DAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNT 481 (670)
T ss_pred --CceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEec
Confidence 35788999988632 1122211111 12234467999999999864211 112222333445567788888
Q ss_pred EEecC
Q 043757 307 IMDKV 311 (407)
Q Consensus 307 ~~~~~ 311 (407)
.+.+.
T Consensus 482 ~l~~~ 486 (670)
T PLN02217 482 FIPDF 486 (670)
T ss_pred ccCCe
Confidence 77663
No 72
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.09 E-value=0.045 Score=57.30 Aligned_cols=209 Identities=17% Similarity=0.134 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecC
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGG 128 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 128 (407)
|-..||+|++.+.... ..-+|+|.+|+|.- .+.++. .+.+++|.++|. +...|+|.
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E-~V~i~~-~k~ni~l~Gdg~---------------------~~TiIt~~ 342 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAGVYRE-NVEVTK-KKKNIMFLGDGR---------------------GKTIITGS 342 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCceeEE-EEEeCC-CCCeEEEEecCC---------------------CccEEEeC
Confidence 4778999986554322 23489999999983 344431 124677777651 11111110
Q ss_pred -eEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEECCC
Q 043757 129 -GTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNITAPD 202 (407)
Q Consensus 129 -G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~~~~ 202 (407)
-..||.. . + ...-.....+++..+|++|.|... .++-+ ...+...+.+|+|.+..
T Consensus 343 ~~~~~g~~-t-~-----------------~sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q 403 (587)
T PLN02313 343 RNVVDGST-T-F-----------------HSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ 403 (587)
T ss_pred CcccCCCC-c-e-----------------eeEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc
Confidence 0011110 0 0 112333457788888888888532 22333 24677778888888744
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC---ce--EEEecCCCCCCCCceEEEEEEeEE
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG---HG--ISVGSLGNKPDEMDVNGITVFNCT 277 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~ 277 (407)
| -+.... .+-..++|.|...=|-|- + .....++||.+..- .| -.|-..|+ .+...-..+.|.||+
T Consensus 404 D-----TLy~~~-~rq~y~~c~I~GtvDFIF-G--~a~avfq~c~i~~r~~~~~~~~~iTAqgr-~~~~~~tG~v~~~c~ 473 (587)
T PLN02313 404 D-----TLYVHS-NRQFFVKCHITGTVDFIF-G--NAAAVLQDCDINARRPNSGQKNMVTAQGR-SDPNQNTGIVIQNCR 473 (587)
T ss_pred c-----hhccCC-CcEEEEeeEEeeccceec-c--ceeEEEEccEEEEecCCCCCcceEEecCC-CCCCCCceEEEEecE
Confidence 3 222222 344677788777655552 2 34677777777521 11 11111111 122234567788888
Q ss_pred EeCCCeeE----EEEEecCCCCceEEeEEEEEEEEec
Q 043757 278 LITTTNGL----RIKTKRGSASLKASRIFYENIIMDK 310 (407)
Q Consensus 278 ~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~ 310 (407)
+.....-. ..+++-|.....-+.+.|.+..+.+
T Consensus 474 i~~~~~~~~~~~~~~~yLGRPW~~ysr~v~~~s~i~~ 510 (587)
T PLN02313 474 IGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISD 510 (587)
T ss_pred EecCCccccccccchhhccCCCCCCccEEEEecccCC
Confidence 77654211 1112222223334555666666654
No 73
>PLN02314 pectinesterase
Probab=97.03 E-value=0.06 Score=56.41 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=109.9
Q ss_pred cHHHHHHHHHHHhcCC-CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecC
Q 043757 50 NAQAFTETWAKACGSG-APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGG 128 (407)
Q Consensus 50 dt~aiq~Al~~a~~~~-~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 128 (407)
|-..||+|++.+.... ..-+|+|.||+|.- .+.++. .+.+++|+++|. +...|.|.
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~E-~V~i~~-~k~~i~l~G~g~---------------------~~tiIt~~ 345 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEGTYVE-NVLLDK-SKWNVMIYGDGK---------------------DKTIISGS 345 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCceEEE-EEEecC-CCceEEEEecCC---------------------CCcEEEec
Confidence 4677999986543322 23489999999983 444431 124677777651 01111110
Q ss_pred e-EEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEECCC
Q 043757 129 G-TFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNITAPD 202 (407)
Q Consensus 129 G-~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~~~~ 202 (407)
. ..||.. .+ ...-.....+++..+|++|.|... .++-+ ...+...+.+|+|.+..
T Consensus 346 ~~~~~g~~-t~------------------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q 406 (586)
T PLN02314 346 LNFVDGTP-TF------------------STATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ 406 (586)
T ss_pred CCcCCCCC-cc------------------ceEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc
Confidence 0 011110 11 112334467888889999988632 22333 24677788888888744
Q ss_pred CCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ceEEEecCCCCCCCCceEEEEEEeE
Q 043757 203 ESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG------HGISVGSLGNKPDEMDVNGITVFNC 276 (407)
Q Consensus 203 ~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i~n~ 276 (407)
| -+.... ..-..++|.|...=|-| ++ .-...++||.+..- .+ .|-..++ .+...-..+.|.||
T Consensus 407 D-----TLy~~~-~rq~y~~C~I~GtvDFI-FG--~a~avf~~c~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~~c 475 (586)
T PLN02314 407 D-----TLYAHS-NRQFYRDCDITGTIDFI-FG--NAAVVFQNCNIQPRQPLPNQFN-TITAQGK-KDPNQNTGISIQRC 475 (586)
T ss_pred c-----hheeCC-CCEEEEeeEEEecccee-cc--CceeeeeccEEEEecCCCCCCc-eEecCCC-CCCCCCCEEEEEee
Confidence 3 222222 34577788887765554 22 34777888877531 12 1211111 12233456788888
Q ss_pred EEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecC
Q 043757 277 TLITTTNGLRIKTKRGSASLKASRIFYENIIMDKV 311 (407)
Q Consensus 277 ~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 311 (407)
++..... +..+.+-|.....-..+.|.+..+.+.
T Consensus 476 ~i~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 476 TISAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred EEecCCc-ccccccccCCCCCCceEEEEecccCCc
Confidence 8877542 122222222233445566777776654
No 74
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.59 Score=44.58 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHhcCCC--CcEEEeCCceeeEeeeEeecCCCCceEEEEee
Q 043757 49 NNAQAFTETWAKACGSGA--PAKVLIPSGTFLTGPVVFSGPCKSAITVEVRG 98 (407)
Q Consensus 49 ddt~aiq~Al~~a~~~~~--g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G 98 (407)
++-..||+|++.|....+ .-.|.+.+|.|. +.|.++... -.+||++++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~~-~~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAAP-GGITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCCC-CceeEEecC
Confidence 567789999877655443 346777899996 444554210 238888864
No 75
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.28 E-value=0.0049 Score=43.41 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=21.8
Q ss_pred ccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCc-eeeEeeeE
Q 043757 42 AEANGDKNNAQAFTETWAKACGSGAPAKVLIPSG-TFLTGPVV 83 (407)
Q Consensus 42 a~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G-~Y~~~~l~ 83 (407)
|+|||.+|||+||.+||.. . + .+.++=..| ||++++|.
T Consensus 1 A~GDGvtdDt~A~~a~l~a--~-~-~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEA--S-P-VGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHH--S---TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhc--c-C-CCeEEecCCceEEEeeCc
Confidence 6899999999999999753 1 2 245555566 58887653
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.18 Score=48.25 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=11.9
Q ss_pred CCCcEEEeC---CceeeEe-eeEeec
Q 043757 65 GAPAKVLIP---SGTFLTG-PVVFSG 86 (407)
Q Consensus 65 ~~g~tV~~p---~G~Y~~~-~l~l~~ 86 (407)
.+|+.+-+. +|.+.+. +|+|.+
T Consensus 32 ~pgd~~~i~g~~~g~~vInr~l~l~g 57 (408)
T COG3420 32 KPGDYYGISGRYAGNFVINRALTLRG 57 (408)
T ss_pred CCCcEEEEeeeecccEEEccceeecc
Confidence 345666666 3444553 566654
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.90 E-value=0.47 Score=43.03 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=70.2
Q ss_pred eEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEec-CCceEEecCCceeEEEEeEEEcCCce--EEEecCCCCCCCC
Q 043757 190 NFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGT-GDDCVSIGHGSTDISVSRITCGPGHG--ISVGSLGNKPDEM 266 (407)
Q Consensus 190 nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~s~s~nI~I~n~~~~~~~g--i~igs~~~~~~~~ 266 (407)
..+++|+.|-. +..||||..+ +.+|+|+.... +.|++.++..+..++|.+.-..++.. |..-..
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~------- 128 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHNGG------- 128 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SS-------
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEecCc-------
Confidence 45566666643 3568888887 67888888876 78888888855566666655544433 444211
Q ss_pred ceEEEEEEeEEEeCCCeeEEEEEecCC--CCceEEeEEEEEEEEecCCeeEEEEeecCCCCCCCCceEEEEEEEEe
Q 043757 267 DVNGITVFNCTLITTTNGLRIKTKRGS--ASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKN 340 (407)
Q Consensus 267 ~v~ni~i~n~~~~~~~~gi~i~~~~~~--~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~i~nI~~~n 340 (407)
-.+.|+|.+..+ .|-.+.+-.+. .++.=+.+.+++........-+.|..+|.+ ...|++++++.
T Consensus 129 --Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD------~ati~~~~~~~ 194 (215)
T PF03211_consen 129 --GTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD------TATISNSCIKG 194 (215)
T ss_dssp --EEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT------TEEEEEEEEEE
T ss_pred --eeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC------eEEEEEEEecC
Confidence 246666644443 23333332211 123446677777665543334555665543 35677777666
No 78
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=95.21 E-value=0.5 Score=47.23 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=39.6
Q ss_pred cCcEEEEeeEEEcC--CC-c----eEEE--eeeeeEEEEeEEEECCCCCCCCce--EEc----cCceeEEEEeeEEecCC
Q 043757 165 VNNSVVTGINSLNS--KG-F----HILL--VFCQNFTASNLNITAPDESPNTDG--IHL----SLSSLVNITNSKIGTGD 229 (407)
Q Consensus 165 ~~nv~I~~v~i~n~--~~-~----~i~~--~~~~nv~i~n~~i~~~~~~~n~DG--i~~----~~s~nv~I~n~~i~~~d 229 (407)
.+.++|+|++|++. +. . .... ..+.+.++.++.|..-.. +..+. .-+ ...++-+|++|.|....
T Consensus 66 G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~ 144 (425)
T PF14592_consen 66 GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNYFQGKT 144 (425)
T ss_dssp SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-EEE---
T ss_pred eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccEeeccc
Confidence 45667777777652 11 1 1111 235667777777764211 11111 111 12467777777776521
Q ss_pred ---ceEEec-------CCceeEEEEeEEEcC-----Cc---eEEEecCCCCCCCCceEEEEEEeEEEeCCC
Q 043757 230 ---DCVSIG-------HGSTDISVSRITCGP-----GH---GISVGSLGNKPDEMDVNGITVFNCTLITTT 282 (407)
Q Consensus 230 ---D~i~i~-------s~s~nI~I~n~~~~~-----~~---gi~igs~~~~~~~~~v~ni~i~n~~~~~~~ 282 (407)
--+.+. ....+-+|.+++|.+ +. .|+||... ....-.+.+|+++.|.++.
T Consensus 145 ~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~---~S~~~s~t~Ve~NlFe~cd 212 (425)
T PF14592_consen 145 NRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSH---SSMSDSNTTVENNLFERCD 212 (425)
T ss_dssp SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SST---T-B-----EEES-EEEEE-
T ss_pred cCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEeccc---ccccccceeeecchhhhcC
Confidence 123332 112345677777741 22 27776542 2234466677777776654
No 79
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.79 E-value=0.19 Score=33.29 Aligned_cols=38 Identities=29% Similarity=0.215 Sum_probs=16.7
Q ss_pred EEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEe
Q 043757 184 LLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIG 226 (407)
Q Consensus 184 ~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 226 (407)
.+..+.+.+|++.++.. +.|||++..+++-+|+++.+.
T Consensus 3 ~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 3 YLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 33444444444444443 333444444444444444443
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.78 E-value=0.13 Score=34.03 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=32.7
Q ss_pred eEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEc
Q 043757 209 GIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCG 249 (407)
Q Consensus 209 Gi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~ 249 (407)
||.++.+.+.+|+++.+....|||.+.. +.+-+|+++++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEEE
Confidence 6888888888899999999888999887 567777777664
No 81
>PLN02480 Probable pectinesterase
Probab=92.16 E-value=3.2 Score=40.62 Aligned_cols=134 Identities=10% Similarity=0.058 Sum_probs=85.5
Q ss_pred eeeeEEEEeEEEECCCC---C--CCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCC
Q 043757 187 FCQNFTASNLNITAPDE---S--PNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLG 260 (407)
Q Consensus 187 ~~~nv~i~n~~i~~~~~---~--~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~ 260 (407)
..++++++|++|.+... . ....++-+. .++++.+.||.|....|-+.... ..-.++||++.+.-++-+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 45788999999998621 1 123456553 56899999999999888876543 46889999998877888874
Q ss_pred CCCCCCceEEEEEEeEEEeCCC------eeEEEEEecCCCCceEEeEEEEEEEEecCCeeEEEEeecCCCCCCCCceEEE
Q 043757 261 NKPDEMDVNGITVFNCTLITTT------NGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKIT 334 (407)
Q Consensus 261 ~~~~~~~v~ni~i~n~~~~~~~------~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~i~ 334 (407)
-...|+||++.... .|. |.... .....-....|.|+++.... .+.+-.. | .+..
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~-ITA~~-r~~~~~~GfvF~~C~i~g~g-~~yLGRP---W------~~ya 265 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGS-ITAHN-RESEDNSGFVFIKGKVYGIG-EVYLGRA---K------GAYS 265 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceE-EEcCC-CCCCCCCEEEEECCEEcccC-ceeeecC---C------CCcc
Confidence 25678888887532 122 22111 11122345779999998642 2333321 1 2356
Q ss_pred EEEEEeEEEE
Q 043757 335 DVHYKNIKGT 344 (407)
Q Consensus 335 nI~~~nI~~~ 344 (407)
.+.|.|-.+.
T Consensus 266 ~vVf~~t~l~ 275 (343)
T PLN02480 266 RVIFAKTYLS 275 (343)
T ss_pred eEEEEecccC
Confidence 6667666653
No 82
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=91.50 E-value=2.3 Score=39.53 Aligned_cols=128 Identities=18% Similarity=0.249 Sum_probs=69.3
Q ss_pred EEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC--ceEEEecCC
Q 043757 183 ILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPG--HGISVGSLG 260 (407)
Q Consensus 183 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~--~gi~igs~~ 260 (407)
+.+....+..|++++|.++.. ...-|+.+.++ +.+|+||+|.+. .|+.+-...
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess------------------------~~tI~Nntf~~~~~~GI~v~g~~ 145 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS------------------------SPTIANNTFTNNGREGIFVTGTS 145 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC------------------------CcEEEeeEEECCccccEEEEeee
Confidence 344455677788888887521 12223333332 555555555542 355442110
Q ss_pred CCCCCCceEEEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecCCeeEEEEeec---CCCCC-CCCceEEEEE
Q 043757 261 NKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNY---GAKKN-EPSRVKITDV 336 (407)
Q Consensus 261 ~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~---~~~~~-~~~~~~i~nI 336 (407)
....+.++.|+++.+.....|+.+..... + +. ..++|..+++...+|.+...- +.... .+..-.|++=
T Consensus 146 ---~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~-~~-n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N 217 (246)
T PF07602_consen 146 ---ANPGINGNVISGNSIYFNKTGISISDNAA---P-VE-NKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNN 217 (246)
T ss_pred ---cCCcccceEeecceEEecCcCeEEEcccC---C-cc-ceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecC
Confidence 13467788899999999888998864432 2 22 244667776655677654322 22111 1222356666
Q ss_pred EEEeEEE
Q 043757 337 HYKNIKG 343 (407)
Q Consensus 337 ~~~nI~~ 343 (407)
..-||+.
T Consensus 218 ~~~Dl~~ 224 (246)
T PF07602_consen 218 GRYDLNN 224 (246)
T ss_pred cceeeEe
Confidence 6666665
No 83
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=91.38 E-value=4.9 Score=39.91 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=30.8
Q ss_pred ceeEEEEeEEEcCC--ceEEEecCCC---------------CCCCCceEEEEEEeEEEeCCCeeEEEEEecCCCCceEEe
Q 043757 238 STDISVSRITCGPG--HGISVGSLGN---------------KPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASR 300 (407)
Q Consensus 238 s~nI~I~n~~~~~~--~gi~igs~~~---------------~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~n 300 (407)
+-|.+++|...-.. +|+-+|+-.. ++...--.|=.|+|+..+++. |+-+ |..+++++|+|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~l-GVG~--~~DG~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSL-GVGI--GMDGKGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-S-SESC--EEECCS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccc-eeee--eecCCCceEee
Confidence 46778888765433 4666665322 111112345567777777765 5544 23334677777
Q ss_pred EEEEEEE
Q 043757 301 IFYENII 307 (407)
Q Consensus 301 I~~~ni~ 307 (407)
|+.+++.
T Consensus 340 i~~~d~~ 346 (549)
T PF09251_consen 340 ITVQDCA 346 (549)
T ss_dssp EEEES-S
T ss_pred EEeeccc
Confidence 7666554
No 84
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=91.02 E-value=18 Score=35.95 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=62.5
Q ss_pred EeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEec-CCceEEecCCceeEEEEeEEEcCCc-eEEEecCCCC
Q 043757 185 LVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGT-GDDCVSIGHGSTDISVSRITCGPGH-GISVGSLGNK 262 (407)
Q Consensus 185 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~s~s~nI~I~n~~~~~~~-gi~igs~~~~ 262 (407)
+..=.+|++.|+++...+ ...|+-+....++++++|.|.+ ...|+... ....|+.|+|.+.. |+.-
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~------ 184 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVS------ 184 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeec------
Confidence 344468999999999854 2346667777899999999998 33355444 47889999997553 4432
Q ss_pred CCCCceEEEEEEeEEEeCCCeeEE
Q 043757 263 PDEMDVNGITVFNCTLITTTNGLR 286 (407)
Q Consensus 263 ~~~~~v~ni~i~n~~~~~~~~gi~ 286 (407)
.+...+.+++|+|+...-|+.
T Consensus 185 ---~~~~~lsVk~C~FekC~igi~ 205 (386)
T PF01696_consen 185 ---RGKSKLSVKKCVFEKCVIGIV 205 (386)
T ss_pred ---CCcceEEeeheeeeheEEEEE
Confidence 334678889999998887773
No 85
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=89.88 E-value=15 Score=33.40 Aligned_cols=135 Identities=13% Similarity=0.041 Sum_probs=84.6
Q ss_pred eccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCce-eEEEEeeEEecCCceEEecCCceeE
Q 043757 163 NHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSS-LVNITNSKIGTGDDCVSIGHGSTDI 241 (407)
Q Consensus 163 ~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~s~s~nI 241 (407)
.--++.+++++.|-.+...+||... +.+|+|+-...- ..|.+.+.+.. .++|.+.-.+..+|=|-=..+...+
T Consensus 58 ~le~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv 131 (215)
T PF03211_consen 58 ILEDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTV 131 (215)
T ss_dssp EEETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEE
T ss_pred EecCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeE
Confidence 3357899999999777778999988 888999988874 44888888766 8999999888877766555556789
Q ss_pred EEEeEEEcCCceEEEecCCCCCCC-CceEEEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEE
Q 043757 242 SVSRITCGPGHGISVGSLGNKPDE-MDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYEN 305 (407)
Q Consensus 242 ~I~n~~~~~~~gi~igs~~~~~~~-~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~n 305 (407)
+|+|.+... .|--+-|-|.-... +.-+++.+++........-+.|....+ +...|+++.+..
T Consensus 132 ~I~nF~a~d-~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g-D~ati~~~~~~~ 194 (215)
T PF03211_consen 132 TIKNFYAED-FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG-DTATISNSCIKG 194 (215)
T ss_dssp EEEEEEEEE-EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT-TTEEEEEEEEEE
T ss_pred EEEeEEEcC-CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC-CeEEEEEEEecC
Confidence 999966542 34333333322111 244667777765544332234444443 345565555554
No 86
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=89.28 E-value=5 Score=42.77 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=77.4
Q ss_pred eeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCC
Q 043757 187 FCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDE 265 (407)
Q Consensus 187 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~ 265 (407)
..+++..+|++|.|.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 405 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD------- 405 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC-------
Confidence 457888999999986543334445543 45899999999999888887765 45689999999887888874
Q ss_pred CceEEEEEEeEEEeCCC----eeEEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 266 MDVNGITVFNCTLITTT----NGLRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 266 ~~v~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-.. ..-.|.- .+. ....-..+.|.|+++....
T Consensus 406 ---a~avfq~C~I~~r~~~~~~~~~ITA-qgr~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 406 ---AAAVFQNCTLLVRKPLLNQACPITA-HGRKDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred ---ceEEEEccEEEEccCCCCCceeEec-CCCCCCCCCceEEEEeeEEecCc
Confidence 24678888887531 1123322 211 1123356889999998753
No 87
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=88.08 E-value=8.2 Score=39.88 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=18.3
Q ss_pred ccCcEEEEeeEEEcCCC----ceEEE-eeeeeEEEEeEEEEC
Q 043757 164 HVNNSVVTGINSLNSKG----FHILL-VFCQNFTASNLNITA 200 (407)
Q Consensus 164 ~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~n~~i~~ 200 (407)
..+++..+|++|.|... .++-+ ...+...+.+|+|.+
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G 309 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAG 309 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeec
Confidence 45666666666666432 11211 124555555555554
No 88
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=87.75 E-value=10 Score=39.84 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=77.1
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.++||++.+.-++-+|.
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------ 413 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN------ 413 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc------
Confidence 3568899999999986443233444443 45899999999999888887765 34579999999888888875
Q ss_pred CCceEEEEEEeEEEeCCC----eeEEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTT----NGLRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-.. ..-.|.- .+. ....-..+.|.|+++....
T Consensus 414 ----a~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 414 ----SAVVFQNCNILPRRPMKGQQNTITA-QGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred ----ceEEEeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEccEEecCC
Confidence 35678888886421 1112322 211 1233456889999998754
No 89
>PLN02314 pectinesterase
Probab=87.66 E-value=11 Score=39.83 Aligned_cols=114 Identities=9% Similarity=0.093 Sum_probs=77.0
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.++||++.+.-++-+|.
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------ 433 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGN------ 433 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccC------
Confidence 3568899999999986432233444443 45889999999999888887766 34689999999888888875
Q ss_pred CCceEEEEEEeEEEeCCC----eeEEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTT----NGLRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||.+.-.. ..-.|. ..+. ....-..+.|.|+++....
T Consensus 434 ----a~avf~~c~i~~~~~~~~~~~~iT-A~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 ----AAVVFQNCNIQPRQPLPNQFNTIT-AQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ----ceeeeeccEEEEecCCCCCCceEe-cCCCCCCCCCCEEEEEeeEEecCC
Confidence 24678888886421 011222 1211 1233456789999998854
No 90
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=87.48 E-value=9.4 Score=39.84 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=75.3
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 380 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGN------ 380 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEecc------
Confidence 3567888899999885432233444443 35899999999999888877665 34589999998887888875
Q ss_pred CCceEEEEEEeEEEeCCCe----eEEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTTN----GLRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~~----gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-... .-.|.- .+. ....-..+.|.|+++....
T Consensus 381 ----a~avf~~C~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 381 ----AAAVFQNCIILPRRPLKGQANVITA-QGRADPFQNTGISIHNSRILPAP 428 (539)
T ss_pred ----cceEEeccEEEEecCCCCCcceEec-CCCCCCCCCceEEEEeeEEecCC
Confidence 245688888765320 112321 211 1123357889999998753
No 91
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=87.37 E-value=13 Score=37.41 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=44.8
Q ss_pred ceeEEEEeeEEecCCceEEecCC----------ceeEEEEeEEEcCCceEEEecCCCCCCCCceEEEEEEeEEEeCCCe-
Q 043757 215 SSLVNITNSKIGTGDDCVSIGHG----------STDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTN- 283 (407)
Q Consensus 215 s~nv~I~n~~i~~~dD~i~i~s~----------s~nI~I~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~- 283 (407)
...+.+.+|.|....|-+..... ...-.++||++.+.-++-+|. -...|+||++.....
T Consensus 237 GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFIFG~----------g~AvFenC~I~s~~~~ 306 (422)
T PRK10531 237 GDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFVFGR----------GAVVFDNTEFRVVNSR 306 (422)
T ss_pred CCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeecccEEccC----------ceEEEEcCEEEEecCC
Confidence 35677777777776666655210 124667777777666666654 134566666654211
Q ss_pred ---eEEEEEecCCCCceEEeEEEEEEEEecC
Q 043757 284 ---GLRIKTKRGSASLKASRIFYENIIMDKV 311 (407)
Q Consensus 284 ---gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 311 (407)
.-.|... ......-..+.|.|++++..
T Consensus 307 ~~~~g~ITA~-~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 307 TQQEAYVFAP-ATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred CCCceEEEec-CCCCCCCCEEEEECCEEecC
Confidence 1122111 11112223466777777664
No 92
>PLN02197 pectinesterase
Probab=86.36 E-value=15 Score=38.65 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=77.3
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|..
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 433 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGKS----- 433 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccce-----
Confidence 3568899999999985432233444443 35899999999999999888765 355899999998878888752
Q ss_pred CCceEEEEEEeEEEeCCC--ee--EEEEEecCCC--CceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTT--NG--LRIKTKRGSA--SLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~--~g--i~i~~~~~~~--~g~i~nI~~~ni~~~~~~ 312 (407)
...|+||++.-.. .| -.| +..+.. ...-..+.|.|+++....
T Consensus 434 -----~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 434 -----ATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred -----eeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccEEecCC
Confidence 3678888876421 11 122 222211 123356889999998753
No 93
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=82.96 E-value=23 Score=35.39 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=45.6
Q ss_pred ceeEEEEeeE-EecCCceEEecCC-----------------------ceeEEEEeEEEcCCceEEEecCCCCCCCCceEE
Q 043757 215 SSLVNITNSK-IGTGDDCVSIGHG-----------------------STDISVSRITCGPGHGISVGSLGNKPDEMDVNG 270 (407)
Q Consensus 215 s~nv~I~n~~-i~~~dD~i~i~s~-----------------------s~nI~I~n~~~~~~~gi~igs~~~~~~~~~v~n 270 (407)
|-|..++|+. +..-.|++.+++. -.|-.|+|....++.|+.++.-| ..+.++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG---~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDG---KGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEEC---CS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecC---CCceEee
Confidence 4467777776 4457888888763 26778899988888888887654 3456666
Q ss_pred EEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecC
Q 043757 271 ITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKV 311 (407)
Q Consensus 271 i~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 311 (407)
|++++|. ..|+.++.. +=.|.||++-++
T Consensus 340 i~~~d~~----g~G~~~~~~---------~~~ftNitvId~ 367 (549)
T PF09251_consen 340 ITVQDCA----GAGIFIRGT---------NKVFTNITVIDT 367 (549)
T ss_dssp EEEES-S----SESEEEECC---------S-EEEEEEEES-
T ss_pred EEeeccc----CCceEEeec---------CCceeeeEEEec
Confidence 6666553 345665432 234667766554
No 94
>PLN02773 pectinesterase
Probab=82.28 E-value=51 Score=32.02 Aligned_cols=113 Identities=10% Similarity=0.140 Sum_probs=77.9
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
..++++..+|++|.+..........-+. ....+.+.+|.|....|-+..+. ..-.++||++.+.-++-+|.
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~------ 170 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN------ 170 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec------
Confidence 3568899999999986432222333333 35899999999999889887764 46889999999888888875
Q ss_pred CCceEEEEEEeEEEeCCCeeEEEEEecCCC-CceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTTNGLRIKTKRGSA-SLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~-~g~i~nI~~~ni~~~~~~ 312 (407)
-...|++|++.....|. |.- ++.. ...-....|.|++++...
T Consensus 171 ----g~a~Fe~c~i~s~~~g~-ITA-~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 171 ----STALLEHCHIHCKSAGF-ITA-QSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ----cEEEEEeeEEEEccCcE-EEC-CCCCCCCCCceEEEEccEEecCC
Confidence 24789999988655442 221 1111 112235779999998754
No 95
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=77.59 E-value=75 Score=32.93 Aligned_cols=115 Identities=12% Similarity=0.060 Sum_probs=75.4
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+.+..+.+|.|....|-+..++ ..-.+++|++.+.-++-+|..
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG~a----- 339 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFGNA----- 339 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEeccc-----
Confidence 3568899999999986432233344443 35899999999999988887766 245889999988778888752
Q ss_pred CCceEEEEEEeEEEeCCCe--e--EEEEEecCCCCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTTN--G--LRIKTKRGSASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~~--g--i~i~~~~~~~~g~i~nI~~~ni~~~~~~ 312 (407)
...|+||++..... + -.|..........-..+.|.|+++....
T Consensus 340 -----~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 340 -----AAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred -----ceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 35688888864211 1 1222111111123356789999998754
No 96
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=77.34 E-value=12 Score=35.30 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=9.8
Q ss_pred EEEeeeeeEEEEeEEEEC
Q 043757 183 ILLVFCQNFTASNLNITA 200 (407)
Q Consensus 183 i~~~~~~nv~i~n~~i~~ 200 (407)
+|+++.++..|+|++..+
T Consensus 262 vhvengkhfvirnvkakn 279 (464)
T PRK10123 262 IHVENGKHFVIRNIKAKN 279 (464)
T ss_pred EEecCCcEEEEEeeeccc
Confidence 555555555555555543
No 97
>PF14262 DUF4353: Domain of unknown function (DUF4353)
Probab=76.18 E-value=65 Score=30.38 Aligned_cols=53 Identities=19% Similarity=0.378 Sum_probs=31.3
Q ss_pred CcEEEe-CCceeeEe------eeEeecCCCCceEEEEee-EEEEecCCcCCCCCceEEEEeeeceEEe
Q 043757 67 PAKVLI-PSGTFLTG------PVVFSGPCKSAITVEVRG-IVKATTDLKEYADGDWILFENIDGLLLT 126 (407)
Q Consensus 67 g~tV~~-p~G~Y~~~------~l~l~~~~~s~vtl~~~G-~i~~~~~~~~~~~~~~i~~~~~~nv~I~ 126 (407)
+.+|.+ .+|+|.+. .|.+.......|+|.|+| .|.-+. .+.|++...+.+.|.
T Consensus 6 ~~~vtIt~~GtY~lsGs~~~g~i~V~a~~~~~v~lvL~gv~it~~~-------~a~I~v~~a~k~~i~ 66 (264)
T PF14262_consen 6 GSTVTITKAGTYVLSGSLSDGQIVVDAGDTDKVRLVLDGVSITNSS-------GAAIYVKSADKVFIT 66 (264)
T ss_pred CCEEEEcCCEEEEEEEEccCcEEEEEcCCCceEEEEECCeEEeCCC-------CCCEEEEeCCeEEEE
Confidence 457777 46899873 345543223568888887 454332 345666665555554
No 98
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=74.63 E-value=70 Score=33.48 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=77.7
Q ss_pred EeeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCC
Q 043757 185 LVFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKP 263 (407)
Q Consensus 185 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~ 263 (407)
....+++..+|++|.+.........+-+. ...++.+.+|.|....|-+..++ ..-.++||++.+.-++-+|..
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~a---- 388 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGNG---- 388 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccCc----
Confidence 44668899999999986433233444443 35899999999999988887765 356999999998888888752
Q ss_pred CCCceEEEEEEeEEEeCCCe----eEEEEEecCC-CCceEEeEEEEEEEEecC
Q 043757 264 DEMDVNGITVFNCTLITTTN----GLRIKTKRGS-ASLKASRIFYENIIMDKV 311 (407)
Q Consensus 264 ~~~~v~ni~i~n~~~~~~~~----gi~i~~~~~~-~~g~i~nI~~~ni~~~~~ 311 (407)
...|+||++.-... .-.|.- .+. ....-..+.|.|+++...
T Consensus 389 ------~avfq~C~i~~r~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 389 ------AAVLQNCKIYTRVPLPLQKVTITA-QGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred ------eeEEeccEEEEccCCCCCCceEEc-cCCCCCCCCcEEEEEcCEEccC
Confidence 46788888875321 122321 211 112235678999999864
No 99
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=73.94 E-value=26 Score=30.98 Aligned_cols=16 Identities=6% Similarity=-0.128 Sum_probs=8.6
Q ss_pred ceEEEEEEeEEEeCCC
Q 043757 267 DVNGITVFNCTLITTT 282 (407)
Q Consensus 267 ~v~ni~i~n~~~~~~~ 282 (407)
+..|.+|||+.|.+..
T Consensus 62 GF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 62 GFYNTLIENNVFDGVY 77 (198)
T ss_pred cccccEEEeeeecccc
Confidence 3445555555555544
No 100
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=70.08 E-value=84 Score=32.94 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=77.3
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+.++.+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 385 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN------ 385 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc------
Confidence 3468899999999986543333444443 35899999999999888887665 45699999999888888875
Q ss_pred CCceEEEEEEeEEEeCCCe--e--EEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTTN--G--LRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~~--g--i~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-... | -.| +.++. ....-..+.|.|+++....
T Consensus 386 ----a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~~ 433 (541)
T PLN02416 386 ----AAVVFQACNIVSKMPMPGQFTVI-TAQSRDTPDEDTGISIQNCSILATE 433 (541)
T ss_pred ----ceEEEeccEEEEecCCCCCceEE-ECCCCCCCCCCCEEEEEeeEEecCC
Confidence 246788888865321 1 122 22211 1123357889999997643
No 101
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=69.71 E-value=81 Score=27.98 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=50.7
Q ss_pred eeEEEEeeEEec-CC-------ceEEecCCceeEEEEeEEEcCCceEEEec---CCCCCCCCceEEEEEEeEEEeCCC--
Q 043757 216 SLVNITNSKIGT-GD-------DCVSIGHGSTDISVSRITCGPGHGISVGS---LGNKPDEMDVNGITVFNCTLITTT-- 282 (407)
Q Consensus 216 ~nv~I~n~~i~~-~d-------D~i~i~s~s~nI~I~n~~~~~~~gi~igs---~~~~~~~~~v~ni~i~n~~~~~~~-- 282 (407)
++|+|++..|+. |. .|| +.++..|.+|+|+.|.+..+.+|.. ....+-.+.-.-.+++|+.|.++.
T Consensus 34 ~nVhIhhN~fY~tGtn~~~~wvGGI-v~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~r 112 (198)
T PF08480_consen 34 KNVHIHHNIFYDTGTNPNIDWVGGI-VTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKR 112 (198)
T ss_pred ccEEEECcEeecCCcCCCCceeeeE-EeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeeec
Confidence 577777777764 21 233 3345788899999988765333321 110101122334677888777643
Q ss_pred ------eeEEEEEecCCCCceEEeEEEEEEEEecCC
Q 043757 283 ------NGLRIKTKRGSASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 283 ------~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 312 (407)
.|-.|...- ..-+.+.++|..+.+..
T Consensus 113 ~~~~~GtGYgv~N~L----~~tHsFvLenNclYnN~ 144 (198)
T PF08480_consen 113 KSSPAGTGYGVINYL----PETHSFVLENNCLYNNA 144 (198)
T ss_pred ccCCCCceeEEEecC----CCcceEEEEccceeccC
Confidence 344443332 22366778888877654
No 102
>PLN02682 pectinesterase family protein
Probab=69.41 E-value=1.2e+02 Score=30.02 Aligned_cols=19 Identities=11% Similarity=-0.080 Sum_probs=12.7
Q ss_pred eEEeccCcEEEEeeEEEcC
Q 043757 160 IKFNHVNNSVVTGINSLNS 178 (407)
Q Consensus 160 i~~~~~~nv~I~~v~i~n~ 178 (407)
-.....+++..+|++|.|.
T Consensus 157 T~~v~a~~F~a~nlTf~Nt 175 (369)
T PLN02682 157 TFAVNSPYFIAKNITFKNT 175 (369)
T ss_pred EEEEECCCeEEEeeEEEcc
Confidence 3444566777777777775
No 103
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=69.26 E-value=1.1e+02 Score=32.46 Aligned_cols=114 Identities=10% Similarity=0.133 Sum_probs=77.5
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 440 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------ 440 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc------
Confidence 3568899999999985432233344443 45899999999999888887665 45799999999888888875
Q ss_pred CCceEEEEEEeEEEeCCC----eeEEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTT----NGLRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-.. ..-.|.- .+. ....-..+.|.|++++...
T Consensus 441 ----a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 441 ----AAAIFQNCLIFVRKPLPNQQNTVTA-QGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ----eeEEEEecEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEeeEEecCc
Confidence 35678888886531 0112322 211 1123457889999998754
No 104
>PLN02665 pectinesterase family protein
Probab=69.14 E-value=1.3e+02 Score=29.97 Aligned_cols=81 Identities=9% Similarity=-0.042 Sum_probs=38.4
Q ss_pred eEEeccCcEEEEeeEEEcCCC---------ceEEE-eeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCC
Q 043757 160 IKFNHVNNSVVTGINSLNSKG---------FHILL-VFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGD 229 (407)
Q Consensus 160 i~~~~~~nv~I~~v~i~n~~~---------~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~d 229 (407)
-....++++..+|++|+|... .++-+ ...+...+.||+|.+..| -+... .-+-..++|.|...=
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QD-----TL~~~-~gr~yf~~CyIeG~V 221 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQD-----TLCDD-KGRHFFKDCYIEGTV 221 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccc-----eeEeC-CCCEEEEeeEEeecc
Confidence 344557778888888877421 11111 124555566666655332 12111 123445555555544
Q ss_pred ceEEecCCceeEEEEeEEEc
Q 043757 230 DCVSIGHGSTDISVSRITCG 249 (407)
Q Consensus 230 D~i~i~s~s~nI~I~n~~~~ 249 (407)
|-| ++. -...+++|++.
T Consensus 222 DFI-FG~--g~a~fe~C~i~ 238 (366)
T PLN02665 222 DFI-FGS--GKSLYLNTELH 238 (366)
T ss_pred cee-ccc--cceeeEccEEE
Confidence 443 121 24455555553
No 105
>PLN02634 probable pectinesterase
Probab=68.81 E-value=1.3e+02 Score=29.85 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=10.3
Q ss_pred ccCcEEEEeeEEEcC
Q 043757 164 HVNNSVVTGINSLNS 178 (407)
Q Consensus 164 ~~~nv~I~~v~i~n~ 178 (407)
..+++..+|++|.|.
T Consensus 147 ~a~~F~a~niTf~Nt 161 (359)
T PLN02634 147 YANYFTARNISFKNT 161 (359)
T ss_pred ECCCeEEEeCeEEeC
Confidence 456777777777765
No 106
>PLN02176 putative pectinesterase
Probab=67.78 E-value=1.3e+02 Score=29.57 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=38.4
Q ss_pred ccCcEEEEeeEEEcCCC----------ceEEE-eeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceE
Q 043757 164 HVNNSVVTGINSLNSKG----------FHILL-VFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCV 232 (407)
Q Consensus 164 ~~~nv~I~~v~i~n~~~----------~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i 232 (407)
..+++..+|++|.|... .++-+ ...+...+.+|+|.+..| -+-.. ..+-..++|.|...=|-|
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QD-----TLy~~-~gRqyf~~CyIeG~VDFI 193 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQD-----TLFDG-KGRHYYKRCVISGGIDFI 193 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccc-----eeEeC-CcCEEEEecEEEecccEE
Confidence 46777888888877521 12211 134556666666665332 12211 234555566665544444
Q ss_pred EecCCceeEEEEeEEEc
Q 043757 233 SIGHGSTDISVSRITCG 249 (407)
Q Consensus 233 ~i~s~s~nI~I~n~~~~ 249 (407)
- +. ....++||++.
T Consensus 194 F-G~--a~a~Fe~C~I~ 207 (340)
T PLN02176 194 F-GY--AQSIFEGCTLK 207 (340)
T ss_pred e-cC--ceEEEeccEEE
Confidence 2 22 34555555553
No 107
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=67.53 E-value=1.3e+02 Score=31.33 Aligned_cols=115 Identities=9% Similarity=0.099 Sum_probs=77.7
Q ss_pred EeeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCC
Q 043757 185 LVFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKP 263 (407)
Q Consensus 185 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~ 263 (407)
....+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 309 ~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 381 (529)
T PLN02170 309 AAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGN----- 381 (529)
T ss_pred EEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceeccc-----
Confidence 34568899999999986432233344443 35899999999999999887765 35688999999888888875
Q ss_pred CCCceEEEEEEeEEEeCCCe---eEEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 264 DEMDVNGITVFNCTLITTTN---GLRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 264 ~~~~v~ni~i~n~~~~~~~~---gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-... .-.|.- .+. ....-..+.|.|++++...
T Consensus 382 -----a~avFq~C~I~~~~~~~~~g~ITA-q~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 382 -----SAVVFQSCNIAARKPSGDRNYVTA-QGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred -----ceEEEeccEEEEecCCCCceEEEe-cCCCCCCCCceEEEEeeEEecCC
Confidence 246788888865321 123322 211 1123356789999998754
No 108
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=66.04 E-value=1.4e+02 Score=31.39 Aligned_cols=116 Identities=10% Similarity=0.087 Sum_probs=78.7
Q ss_pred EeeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCC
Q 043757 185 LVFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKP 263 (407)
Q Consensus 185 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~ 263 (407)
....+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.++||++.+.-++-+|.
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~----- 381 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGN----- 381 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeec-----
Confidence 34558899999999986543334455554 45789999999999999887776 34689999999888888875
Q ss_pred CCCceEEEEEEeEEEeCCC----eeEEEEEecCCCCceEEeEEEEEEEEecCC
Q 043757 264 DEMDVNGITVFNCTLITTT----NGLRIKTKRGSASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 264 ~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-.. ..-.|.-........-..+.|.|+++....
T Consensus 382 -----a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~ 429 (538)
T PLN03043 382 -----AAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAP 429 (538)
T ss_pred -----ceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCC
Confidence 24678888886521 111222111011123346889999998753
No 109
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=64.29 E-value=1.3e+02 Score=31.82 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=78.4
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 408 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGN------ 408 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceeccc------
Confidence 3558999999999986443333445443 45899999999999999888776 35699999999888888875
Q ss_pred CCceEEEEEEeEEEeCCC----eeEEEEEecCCCCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTT----NGLRIKTKRGSASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 312 (407)
-.+.|+||++.... ..-.|.-........-..+.|.|+++....
T Consensus 409 ----a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 456 (566)
T PLN02713 409 ----AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAAD 456 (566)
T ss_pred ----ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCC
Confidence 34678888886531 111222211011123356789999998643
No 110
>PLN02916 pectinesterase family protein
Probab=62.08 E-value=2e+02 Score=29.83 Aligned_cols=115 Identities=11% Similarity=0.094 Sum_probs=78.1
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 274 v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 345 (502)
T PLN02916 274 VSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGD------ 345 (502)
T ss_pred EECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccC------
Confidence 4557889999999986443333444443 45899999999999999888776 34688999999888888875
Q ss_pred CCceEEEEEEeEEEeCCC----eeEEEEEecCCCCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTT----NGLRIKTKRGSASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-.. ..-.|.-..-.....-..+.|.|+++....
T Consensus 346 ----a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 346 ----AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred ----ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 34678888886532 112332211001133357889999998753
No 111
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=61.08 E-value=1.7e+02 Score=30.81 Aligned_cols=114 Identities=10% Similarity=0.103 Sum_probs=77.5
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.++||++.+.-++-+|.
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 391 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGN------ 391 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceeccc------
Confidence 3558899999999985432233444443 45899999999999999887776 34599999999888888875
Q ss_pred CCceEEEEEEeEEEeCCCe----eEEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTTN----GLRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~~----gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-... .-.|.- .+. ....-..+.|.|+++....
T Consensus 392 ----a~avfq~c~i~~~~~~~~~~~~iTA-qgr~~~~~~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 392 ----AAVVFQNCKIVARKPMAGQKNMVTA-QGRTDPNQNTGISIQKCDIIASS 439 (548)
T ss_pred ----ceeEEeccEEEEecCCCCCCceEEe-cCCCCCCCCCEEEEEeeEEecCc
Confidence 346788888865321 112221 211 1233457889999998753
No 112
>PLN02671 pectinesterase
Probab=60.20 E-value=1.8e+02 Score=28.74 Aligned_cols=18 Identities=22% Similarity=0.078 Sum_probs=11.8
Q ss_pred EEeccCcEEEEeeEEEcC
Q 043757 161 KFNHVNNSVVTGINSLNS 178 (407)
Q Consensus 161 ~~~~~~nv~I~~v~i~n~ 178 (407)
.....+++..+|++|.|.
T Consensus 149 v~v~a~~F~a~nitfeNt 166 (359)
T PLN02671 149 VTIESDYFCATGITFENT 166 (359)
T ss_pred EEEECCceEEEeeEEEcC
Confidence 344466777777777775
No 113
>PLN02497 probable pectinesterase
Probab=57.07 E-value=2e+02 Score=28.16 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=10.4
Q ss_pred eccCcEEEEeeEEEcC
Q 043757 163 NHVNNSVVTGINSLNS 178 (407)
Q Consensus 163 ~~~~nv~I~~v~i~n~ 178 (407)
...+++..+|++|.|.
T Consensus 112 v~a~~f~a~nlT~~Nt 127 (331)
T PLN02497 112 TLADNTVVKSITFANS 127 (331)
T ss_pred EecCCeEEEccEEEeC
Confidence 3466677777777665
No 114
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=55.56 E-value=2.1e+02 Score=30.44 Aligned_cols=114 Identities=10% Similarity=0.150 Sum_probs=78.0
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~------ 430 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGN------ 430 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccc------
Confidence 3557899999999986443233444443 45899999999999999887776 34589999999888888875
Q ss_pred CCceEEEEEEeEEEeCCC--ee--EEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTT--NG--LRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~--~g--i~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-.. .+ -.|.. .+. ....-..+.|.|+++....
T Consensus 431 ----a~avfq~c~i~~r~~~~~~~~~iTA-qgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 431 ----AAAVLQDCDINARRPNSGQKNMVTA-QGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ----eeEEEEccEEEEecCCCCCcceEEe-cCCCCCCCCceEEEEecEEecCC
Confidence 35678899887531 11 12322 211 1223457889999998754
No 115
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=55.47 E-value=2.7e+02 Score=29.14 Aligned_cols=115 Identities=10% Similarity=0.061 Sum_probs=77.4
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 361 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGD------ 361 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecC------
Confidence 4568899999999986543333444443 35899999999999999888766 34578999999888888875
Q ss_pred CCceEEEEEEeEEEeCCC----eeEEEEEecCCCCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTT----NGLRIKTKRGSASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.... ..-.|.-........-..+.|.|++++...
T Consensus 362 ----a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~ 409 (520)
T PLN02201 362 ----ATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADT 409 (520)
T ss_pred ----ceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 24678888887521 112222211011223346789999998743
No 116
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=53.74 E-value=2.6e+02 Score=29.64 Aligned_cols=113 Identities=13% Similarity=0.197 Sum_probs=77.5
Q ss_pred eeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCC
Q 043757 187 FCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDE 265 (407)
Q Consensus 187 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~ 265 (407)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 415 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD------- 415 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC-------
Confidence 457899999999986433334445543 45899999999999988887765 35688999999888888875
Q ss_pred CceEEEEEEeEEEeCCC--e--eEEEEEecCCC-CceEEeEEEEEEEEecCC
Q 043757 266 MDVNGITVFNCTLITTT--N--GLRIKTKRGSA-SLKASRIFYENIIMDKVK 312 (407)
Q Consensus 266 ~~v~ni~i~n~~~~~~~--~--gi~i~~~~~~~-~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-.. . .-.|.- .+.. ...-..+.|.|+++....
T Consensus 416 ---a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 ---AKVVLQNCNIVVRKPMKGQSCMITA-QGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ---ceEEEEccEEEEecCCCCCceEEEe-CCCCCCCCCceEEEEeeEEecCc
Confidence 24678888886421 1 123322 2211 123346889999998854
No 117
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=53.70 E-value=2.8e+02 Score=29.44 Aligned_cols=114 Identities=9% Similarity=0.063 Sum_probs=77.5
Q ss_pred eeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCC
Q 043757 186 VFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPD 264 (407)
Q Consensus 186 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~ 264 (407)
...+++..+|++|.+.........+-+. ...+..+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 357 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 428 (587)
T PLN02484 357 ATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN------ 428 (587)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc------
Confidence 4568889999999985432233444443 45899999999999999887765 35689999999888888875
Q ss_pred CCceEEEEEEeEEEeCCC----eeEEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 265 EMDVNGITVFNCTLITTT----NGLRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 265 ~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.-.. ..-.|.- .+. ....-..+.|.|+++....
T Consensus 429 ----a~avfq~C~i~~~~~~~~~~~~ITA-q~r~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 429 ----AAVVLQNCSIYARKPMAQQKNTITA-QNRKDPNQNTGISIHACRILAAS 476 (587)
T ss_pred ----ceeEEeccEEEEecCCCCCceEEEe-cCCCCCCCCcEEEEEeeEEecCC
Confidence 24678888886421 1122322 211 1123457889999998753
No 118
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=53.33 E-value=60 Score=31.24 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=11.1
Q ss_pred EeccCcEEEEeeEEEcC
Q 043757 162 FNHVNNSVVTGINSLNS 178 (407)
Q Consensus 162 ~~~~~nv~I~~v~i~n~ 178 (407)
....+++.+++++|.|.
T Consensus 83 ~v~a~~f~~~nit~~Nt 99 (298)
T PF01095_consen 83 SVNADDFTAENITFENT 99 (298)
T ss_dssp EE-STT-EEEEEEEEEH
T ss_pred cccccceeeeeeEEecC
Confidence 34577888888888774
No 119
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=53.02 E-value=2.9e+02 Score=28.76 Aligned_cols=113 Identities=8% Similarity=0.048 Sum_probs=78.4
Q ss_pred eeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCC
Q 043757 187 FCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDE 265 (407)
Q Consensus 187 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~ 265 (407)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~------- 352 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN------- 352 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc-------
Confidence 457888899999985443334455554 45899999999999989887765 45789999999888888875
Q ss_pred CceEEEEEEeEEEeCCC----eeEEEEEecCC-CCceEEeEEEEEEEEecCC
Q 043757 266 MDVNGITVFNCTLITTT----NGLRIKTKRGS-ASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 266 ~~v~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~ 312 (407)
-...|+||++.... ..-.|.- .+. ....-..+.|.|+++....
T Consensus 353 ---a~avFq~C~I~sr~~~~~~~~~ITA-q~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 ---AAAVFQFCQIVARQPMMGQSNVITA-QSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ---eEEEEEccEEEEecCCCCCCEEEEe-CCCCCCCCCcEEEEEeeEEecCC
Confidence 35778999887532 1123322 221 1123346889999998754
No 120
>PLN02432 putative pectinesterase
Probab=52.67 E-value=2.2e+02 Score=27.34 Aligned_cols=16 Identities=13% Similarity=-0.076 Sum_probs=10.4
Q ss_pred eccCcEEEEeeEEEcC
Q 043757 163 NHVNNSVVTGINSLNS 178 (407)
Q Consensus 163 ~~~~nv~I~~v~i~n~ 178 (407)
...+++..+|++|+|.
T Consensus 91 v~a~~f~a~nlt~~Nt 106 (293)
T PLN02432 91 VLASDFVGRFLTIQNT 106 (293)
T ss_pred EECCCeEEEeeEEEeC
Confidence 3456677777777764
No 121
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=52.27 E-value=3e+02 Score=28.81 Aligned_cols=116 Identities=10% Similarity=0.069 Sum_probs=77.4
Q ss_pred EeeeeeEEEEeEEEECCCCCCCCceEEcc-CceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCC
Q 043757 185 LVFCQNFTASNLNITAPDESPNTDGIHLS-LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKP 263 (407)
Q Consensus 185 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~ 263 (407)
....+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-++-+|..
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~IeGtVDFIFG~a---- 374 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS--AKQFYRECDIYGTIDFIFGNA---- 374 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC--CceEEEeeEEecccceeccCc----
Confidence 34567899999999986433233445543 45899999999999988887765 345999999998888888752
Q ss_pred CCCceEEEEEEeEEEeCCC----eeEEEEEecCCCCceEEeEEEEEEEEecCC
Q 043757 264 DEMDVNGITVFNCTLITTT----NGLRIKTKRGSASLKASRIFYENIIMDKVK 312 (407)
Q Consensus 264 ~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 312 (407)
...|+||++.-.. ..-.|..........-..+.|.|+++....
T Consensus 375 ------~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~ 421 (530)
T PLN02933 375 ------AVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAP 421 (530)
T ss_pred ------eEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 3668888876421 112222211111123346889999998743
No 122
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=51.21 E-value=2.6e+02 Score=29.44 Aligned_cols=80 Identities=8% Similarity=-0.032 Sum_probs=40.1
Q ss_pred EEeccCcEEEEeeEEEcCCC----ceEEEe-eeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEec
Q 043757 161 KFNHVNNSVVTGINSLNSKG----FHILLV-FCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIG 235 (407)
Q Consensus 161 ~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~ 235 (407)
.....+++..+|++|.|... .++-+. ..+.+.+.+|+|.+..| -+.... .+-..++|.|...=|-| ++
T Consensus 325 ~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~~-~rq~y~~C~I~GtVDFI-FG 397 (553)
T PLN02708 325 VGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD-----TLYAHS-LRQFYKSCRIQGNVDFI-FG 397 (553)
T ss_pred EEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceeCC-CceEEEeeEEeecCCEE-ec
Confidence 33456778888888877532 222222 34566666666665332 222222 23345666665544443 22
Q ss_pred CCceeEEEEeEEEc
Q 043757 236 HGSTDISVSRITCG 249 (407)
Q Consensus 236 s~s~nI~I~n~~~~ 249 (407)
.....++||.+.
T Consensus 398 --~a~avfq~c~i~ 409 (553)
T PLN02708 398 --NSAAVFQDCAIL 409 (553)
T ss_pred --CceEEEEccEEE
Confidence 235555555553
No 123
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=46.61 E-value=54 Score=28.78 Aligned_cols=14 Identities=7% Similarity=-0.045 Sum_probs=11.6
Q ss_pred CcEEEeCCceeeEe
Q 043757 67 PAKVLIPSGTFLTG 80 (407)
Q Consensus 67 g~tV~~p~G~Y~~~ 80 (407)
...|||+.|.|.+.
T Consensus 68 ~~~v~F~~d~~~l~ 81 (173)
T PRK10802 68 NNIVYFDLDKYDIR 81 (173)
T ss_pred CCeEEecCCCccCC
Confidence 36899999998775
No 124
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=44.19 E-value=3.6e+02 Score=27.40 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=23.9
Q ss_pred CCCcEEEeCCceeeEeeeEeecCCCCceEEEEe
Q 043757 65 GAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVR 97 (407)
Q Consensus 65 ~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~ 97 (407)
....-+++-+|+|....|.+. |+|+|.++
T Consensus 46 ~~e~LIFlH~G~~e~~~i~I~----sdvqiiGA 74 (625)
T KOG1777|consen 46 DEEKLIFLHEGTHETETIRIT----SDVQIIGA 74 (625)
T ss_pred cccceEEEEeccccceEEEEc----CCeeEecc
Confidence 345688999999998889998 88888765
No 125
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=43.17 E-value=23 Score=27.89 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=12.0
Q ss_pred CcchhhHHHHHHHHHHHHhhhhcccC
Q 043757 1 MARQERFVVKAVLLLGLTFLSSVVQG 26 (407)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (407)
|. -+.++.+.|+|+++|++++.+++
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhhh
Confidence 55 23455445555555555544433
No 126
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=42.95 E-value=32 Score=18.65 Aligned_cols=11 Identities=36% Similarity=0.398 Sum_probs=4.8
Q ss_pred eEEEEeeEEec
Q 043757 217 LVNITNSKIGT 227 (407)
Q Consensus 217 nv~I~n~~i~~ 227 (407)
+++|++|.|..
T Consensus 3 ~~~i~~n~i~~ 13 (26)
T smart00710 3 NVTIENNTIRN 13 (26)
T ss_pred CEEEECCEEEe
Confidence 34444444444
No 127
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=41.38 E-value=81 Score=25.65 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=43.2
Q ss_pred eccCcEEEEeeEEEcC---CCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEEe-eEEecCCceEE
Q 043757 163 NHVNNSVVTGINSLNS---KGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITN-SKIGTGDDCVS 233 (407)
Q Consensus 163 ~~~~nv~I~~v~i~n~---~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n-~~i~~~dD~i~ 233 (407)
....+..|.+-.+.+. ..+++.+..+.+..+.+.++. .. .. .+|++++.+.+..+.+ ..+....||+.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 5566666666666655 367888877666656666665 21 12 6788888777777776 44555555554
No 128
>PLN02304 probable pectinesterase
Probab=40.15 E-value=3.9e+02 Score=26.66 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=10.3
Q ss_pred eccCcEEEEeeEEEcC
Q 043757 163 NHVNNSVVTGINSLNS 178 (407)
Q Consensus 163 ~~~~nv~I~~v~i~n~ 178 (407)
...+++..+|++|.|.
T Consensus 159 v~a~~F~a~nITf~Nt 174 (379)
T PLN02304 159 VFASNFIAKNISFMNV 174 (379)
T ss_pred EECCCeEEEeeEEEec
Confidence 3456677777777664
No 129
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=39.93 E-value=36 Score=25.76 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=7.6
Q ss_pred CCCCCceeEEeee
Q 043757 27 AEPNYSLYFDVTK 39 (407)
Q Consensus 27 ~~~~~~~~~~V~d 39 (407)
+.+...+.+.|..
T Consensus 22 PsQKsKRSVtveq 34 (100)
T PF05984_consen 22 PSQKSKRSVTVEQ 34 (100)
T ss_pred cccccccceeecC
Confidence 4455556776654
No 130
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=38.24 E-value=1.1e+02 Score=25.23 Aligned_cols=55 Identities=24% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCCCCceEEEEeeeceEEecCeEEe
Q 043757 66 APAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFD 132 (407)
Q Consensus 66 ~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~id 132 (407)
.+..|++|+|...+=....+ .--+|.++|+|.+.++.. +.+. ++.|.|.|.|.+.
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~----~l~~l~I~G~L~f~~~~~-------~~L~-a~~I~V~~Gg~l~ 65 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTP----KLGSLIIGGTLIFDDDRD-------ITLR-AEYILVEGGGRLI 65 (125)
T ss_pred CCCEEEECCCCEEEEcCCCh----heeEEEEEEEEEEccCCC-------CEEE-EEEEEECCCCeEE
Confidence 46799999997543211111 122555699999876421 1122 3567787744443
No 131
>PRK09752 adhesin; Provisional
Probab=37.37 E-value=7.1e+02 Score=28.84 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=27.1
Q ss_pred eEEEEeEEEECCCCCCCCceEEccCc-----eeEEEEeeEEecCC----ceEEecCCceeEEEEeEEEc
Q 043757 190 NFTASNLNITAPDESPNTDGIHLSLS-----SLVNITNSKIGTGD----DCVSIGHGSTDISVSRITCG 249 (407)
Q Consensus 190 nv~i~n~~i~~~~~~~n~DGi~~~~s-----~nv~I~n~~i~~~d----D~i~i~s~s~nI~I~n~~~~ 249 (407)
.+.+.++.|.+.....++=.|...+. -.+.|.|+.|.+.. .+=+|.+...++.|.||.|.
T Consensus 122 ~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~ng~vtIsnS~F~ 190 (1250)
T PRK09752 122 TLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFD 190 (1250)
T ss_pred eeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEccCcEEEEeeEEe
Confidence 35566666665332222333444332 13556666665531 12233332335666666554
No 132
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=36.72 E-value=1.6e+02 Score=28.72 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=7.7
Q ss_pred eccCcEEEEeeEEEcC
Q 043757 163 NHVNNSVVTGINSLNS 178 (407)
Q Consensus 163 ~~~~nv~I~~v~i~n~ 178 (407)
...+++..+++++.|.
T Consensus 186 v~~ndf~~~nlT~en~ 201 (405)
T COG4677 186 VQNNDFQLQNLTIENT 201 (405)
T ss_pred eecCCcccccceeecc
Confidence 3344455555555543
No 133
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.57 E-value=2.2e+02 Score=23.85 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHHHhcCCCCc-----EEEeCCceeeEeeeE
Q 043757 48 KNNAQAFTETWAKACGSGAPA-----KVLIPSGTFLTGPVV 83 (407)
Q Consensus 48 tddt~aiq~Al~~a~~~~~g~-----tV~~p~G~Y~~~~l~ 83 (407)
.++...||+| |.+-.+. ..-+|||+|-+..++
T Consensus 59 ~~~~~~f~ra----ctsit~dpv~~~f~~Lk~G~YAvaa~q 95 (151)
T COG4704 59 MSDPSRFQRA----CTSITGDPVSKSFYGLKPGKYAVAAFQ 95 (151)
T ss_pred CCCchHHhhh----cccccCCchhheeecCCCccEEEEEEE
Confidence 4667778888 2222222 233689999876544
No 134
>PRK09752 adhesin; Provisional
Probab=27.31 E-value=1e+03 Score=27.62 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=33.9
Q ss_pred eeEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecC---CceEEecCCc------eeEEEEeEEEcC
Q 043757 189 QNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTG---DDCVSIGHGS------TDISVSRITCGP 250 (407)
Q Consensus 189 ~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~---dD~i~i~s~s------~nI~I~n~~~~~ 250 (407)
.+..+.+.++..... ++=+|.-.....+.|.++.|.+. ..+=+|.+.. -++.|.|+.|.+
T Consensus 96 ~~t~F~nNtasG~~~--sGGAIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~n 164 (1250)
T PRK09752 96 GMTLFANNTVSGEYN--NGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRN 164 (1250)
T ss_pred cceEeecceecCCcC--CccEEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEc
Confidence 466677777764221 22234333344688889988763 2344444321 248888888864
No 135
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=26.39 E-value=89 Score=29.55 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCCCCceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCce----eeEee
Q 043757 27 AEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGT----FLTGP 81 (407)
Q Consensus 27 ~~~~~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~----Y~~~~ 81 (407)
+.+.+.-..+|+.-| -|.+||.+- -+.-.|++|+|- |.++|
T Consensus 23 a~A~~~Vv~SIKPl~-----------~iasaI~dG---Vg~p~vlvp~gASpHdYsLrP 67 (318)
T COG4531 23 AAAAAAVVTSIKPLG-----------FIASAIADG---VGEPEVLLPGGASPHDYSLRP 67 (318)
T ss_pred hcccccceeeeccHH-----------HHHHHHHcc---CCCCceecCCCCCcccccCCh
Confidence 334455677777665 245554321 233488999884 77665
No 136
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=25.40 E-value=57 Score=25.46 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=20.0
Q ss_pred eeCCccC-CCCcccHHHHHHHHHHHhcCCCCcEEEeCCceeeE
Q 043757 38 TKFGAEA-NGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLT 79 (407)
Q Consensus 38 ~d~Ga~g-dg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~ 79 (407)
.|||..+ +.....-..+++||.+-...+ .||+ .|+|+.
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~~~--~tv~--~GtYr~ 48 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIKNP--DTVE--KGTYRR 48 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH-T--T-EE----BETT
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhCCC--CeEe--ccceec
Confidence 4788887 444444578999987766554 5644 899984
No 137
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=25.07 E-value=27 Score=18.40 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=6.1
Q ss_pred HHHHHHHHhhhhc
Q 043757 11 AVLLLGLTFLSSV 23 (407)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (407)
+++++.+++.++.
T Consensus 5 vIIlvvLLliSf~ 17 (19)
T PF13956_consen 5 VIILVVLLLISFP 17 (19)
T ss_pred hHHHHHHHhcccc
Confidence 3444445555443
No 138
>PF15284 PAGK: Phage-encoded virulence factor
Probab=20.11 E-value=1e+02 Score=21.96 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=11.2
Q ss_pred Ccch-hhHHHHHHHHHHHHhhhhcc
Q 043757 1 MARQ-ERFVVKAVLLLGLTFLSSVV 24 (407)
Q Consensus 1 m~~~-~~~~~~~~~~~~~~~~~~~~ 24 (407)
|+++ +.++.++|++.++++.+...
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasam 25 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASAM 25 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHH
Confidence 6663 34444444444444444433
No 139
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=20.07 E-value=2.7e+02 Score=25.39 Aligned_cols=45 Identities=9% Similarity=0.203 Sum_probs=22.1
Q ss_pred CCCCCceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCceeeE
Q 043757 27 AEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLT 79 (407)
Q Consensus 27 ~~~~~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~ 79 (407)
++..+..+|.| +|-+.-++. |+..-....+ ..+ .+|.+--|.|.+
T Consensus 26 ~~~L~DGtYsV-~fkVlK~~t-de~Smmn~Y~----~kP--Akv~VknGK~~V 70 (217)
T TIGR03656 26 SANLADGTYTI-NYTVYKADN-DSASMANDYF----EKP--AKLIVKNGKMTV 70 (217)
T ss_pred cccccCceEEE-EEEEEeCCC-CchhhHHhhc----cCC--cEEEEECCEEEE
Confidence 34445556665 443333333 3333233332 223 688888888654
Done!