Query 043758
Match_columns 918
No_of_seqs 559 out of 4624
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 08:05:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.1E-82 6.7E-87 737.2 74.4 680 94-902 48-728 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 5E-77 1.1E-81 693.6 74.0 713 42-901 48-774 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.2E-65 2.6E-70 581.1 67.3 544 130-831 368-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.9E-65 6.2E-70 578.0 68.4 548 200-902 367-917 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 4.5E-60 9.7E-65 537.6 54.9 479 200-901 84-564 (697)
6 PLN03081 pentatricopeptide (PP 100.0 4.4E-58 9.5E-63 521.3 54.9 513 95-796 85-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-45 6.5E-50 442.5 95.2 839 2-893 31-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-42 2.7E-47 419.8 92.9 815 49-897 43-869 (899)
9 PRK11447 cellulose synthase su 100.0 1.1E-26 2.3E-31 277.8 76.6 657 49-857 49-738 (1157)
10 PRK11447 cellulose synthase su 100.0 1.9E-25 4.2E-30 267.1 67.6 469 4-532 39-556 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2E-23 4.4E-28 236.6 68.1 266 574-897 476-743 (987)
12 PRK09782 bacteriophage N4 rece 100.0 6.1E-23 1.3E-27 232.7 71.4 684 73-881 55-760 (987)
13 KOG2002 TPR-containing nuclear 99.9 1.4E-18 3E-23 183.1 66.7 728 49-897 28-801 (1018)
14 KOG2002 TPR-containing nuclear 99.9 1.7E-18 3.7E-23 182.4 61.2 442 97-638 41-524 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 6E-20 1.3E-24 182.8 38.6 354 414-883 151-508 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 1.5E-19 3.2E-24 180.0 38.7 460 49-620 35-500 (966)
17 KOG2076 RNA polymerase III tra 99.9 1.9E-16 4.2E-21 166.1 57.1 297 3-337 149-478 (895)
18 PRK11788 tetratricopeptide rep 99.8 1.2E-18 2.6E-23 186.4 30.1 236 100-342 110-352 (389)
19 PRK11788 tetratricopeptide rep 99.8 9.9E-18 2.1E-22 179.3 36.4 306 512-901 42-354 (389)
20 KOG0495 HAT repeat protein [RN 99.8 1.4E-13 3E-18 139.0 62.2 615 74-895 263-881 (913)
21 TIGR00990 3a0801s09 mitochondr 99.8 2.4E-16 5.2E-21 177.3 48.3 253 484-823 308-570 (615)
22 PRK15174 Vi polysaccharide exp 99.8 5.6E-17 1.2E-21 181.1 41.7 267 62-336 76-346 (656)
23 TIGR00990 3a0801s09 mitochondr 99.8 4.2E-16 9.2E-21 175.3 48.4 427 68-569 133-571 (615)
24 KOG2076 RNA polymerase III tra 99.8 4.3E-14 9.3E-19 148.8 58.9 664 143-890 150-891 (895)
25 PRK15174 Vi polysaccharide exp 99.8 1.4E-16 3E-21 178.0 41.6 266 64-337 44-313 (656)
26 KOG0495 HAT repeat protein [RN 99.8 8.6E-13 1.9E-17 133.4 61.8 614 7-831 265-885 (913)
27 KOG4318 Bicoid mRNA stability 99.8 8.8E-15 1.9E-19 152.7 46.3 733 84-886 12-864 (1088)
28 PRK10049 pgaA outer membrane p 99.8 2.4E-15 5.2E-20 172.2 45.3 410 411-895 13-457 (765)
29 PRK10049 pgaA outer membrane p 99.8 2.4E-15 5.2E-20 172.2 44.7 398 99-604 17-456 (765)
30 PRK14574 hmsH outer membrane p 99.8 1.2E-14 2.7E-19 162.0 47.8 443 421-896 42-515 (822)
31 KOG4422 Uncharacterized conser 99.8 6.3E-14 1.4E-18 134.2 43.6 343 204-655 117-478 (625)
32 PRK14574 hmsH outer membrane p 99.8 7.9E-14 1.7E-18 155.7 52.0 443 73-604 45-513 (822)
33 KOG4422 Uncharacterized conser 99.8 3.3E-14 7.2E-19 136.0 40.5 468 99-621 118-607 (625)
34 KOG4318 Bicoid mRNA stability 99.8 5.3E-14 1.1E-18 147.1 42.0 715 118-879 11-828 (1088)
35 KOG2003 TPR repeat-containing 99.7 9E-14 2E-18 133.9 34.4 496 206-880 204-709 (840)
36 KOG2003 TPR repeat-containing 99.7 3.9E-13 8.4E-18 129.6 37.9 489 170-810 200-709 (840)
37 KOG1915 Cell cycle control pro 99.7 4.5E-11 9.7E-16 116.6 47.0 463 85-639 62-536 (677)
38 KOG1915 Cell cycle control pro 99.7 3.5E-11 7.6E-16 117.3 44.7 466 73-637 84-583 (677)
39 KOG0985 Vesicle coat protein c 99.7 8.3E-09 1.8E-13 110.1 65.0 767 2-889 369-1244(1666)
40 KOG2047 mRNA splicing factor [ 99.6 5.6E-09 1.2E-13 106.3 56.9 611 12-812 45-711 (835)
41 KOG4162 Predicted calmodulin-b 99.6 1.3E-09 2.8E-14 113.6 51.0 398 414-895 358-784 (799)
42 KOG3785 Uncharacterized conser 99.6 1.5E-10 3.3E-15 108.6 36.9 456 104-639 29-490 (557)
43 KOG2047 mRNA splicing factor [ 99.6 4.7E-08 1E-12 99.8 62.8 180 133-320 103-293 (835)
44 KOG1127 TPR repeat-containing 99.5 1E-08 2.3E-13 109.7 53.6 678 73-877 469-1192(1238)
45 KOG3785 Uncharacterized conser 99.5 3.5E-10 7.6E-15 106.2 37.8 158 705-868 338-497 (557)
46 PF13429 TPR_15: Tetratricopep 99.5 3.3E-14 7.2E-19 143.1 11.5 258 69-335 15-275 (280)
47 PF13429 TPR_15: Tetratricopep 99.5 2.3E-14 5E-19 144.2 10.1 167 723-893 108-276 (280)
48 KOG3616 Selective LIM binding 99.5 3.4E-08 7.5E-13 101.9 54.0 194 103-331 738-931 (1636)
49 TIGR00540 hemY_coli hemY prote 99.5 9.7E-12 2.1E-16 131.9 29.5 260 70-335 126-397 (409)
50 PRK10747 putative protoheme IX 99.5 2.2E-11 4.8E-16 128.2 30.1 255 73-336 129-389 (398)
51 PRK10747 putative protoheme IX 99.5 1.2E-10 2.7E-15 122.6 34.7 290 518-858 97-389 (398)
52 KOG1155 Anaphase-promoting com 99.5 3.9E-10 8.5E-15 110.1 34.5 352 500-916 159-523 (559)
53 KOG0547 Translocase of outer m 99.5 1E-10 2.2E-15 114.8 30.3 184 702-893 372-565 (606)
54 KOG1155 Anaphase-promoting com 99.5 1.1E-09 2.4E-14 107.1 36.8 305 485-896 242-555 (559)
55 TIGR00540 hemY_coli hemY prote 99.5 7.3E-11 1.6E-15 125.2 31.6 300 63-371 83-398 (409)
56 KOG1156 N-terminal acetyltrans 99.5 4.1E-08 8.9E-13 100.6 48.7 139 54-197 33-172 (700)
57 KOG0985 Vesicle coat protein c 99.5 1.6E-07 3.6E-12 100.6 54.4 148 724-885 1219-1374(1666)
58 KOG1156 N-terminal acetyltrans 99.4 5.7E-08 1.2E-12 99.6 47.8 231 77-315 22-259 (700)
59 KOG0547 Translocase of outer m 99.4 5.7E-10 1.2E-14 109.7 32.2 221 215-440 338-564 (606)
60 COG2956 Predicted N-acetylgluc 99.4 1.6E-10 3.5E-15 107.3 26.1 230 109-341 47-282 (389)
61 COG2956 Predicted N-acetylgluc 99.4 7.7E-10 1.7E-14 103.0 30.0 290 251-638 48-346 (389)
62 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.7E-14 105.2 32.2 293 215-574 96-395 (400)
63 KOG1126 DNA-binding cell divis 99.4 2E-10 4.4E-15 117.8 26.8 219 111-338 333-553 (638)
64 COG3071 HemY Uncharacterized e 99.4 5E-09 1.1E-13 101.1 33.9 286 518-859 97-390 (400)
65 KOG1126 DNA-binding cell divis 99.4 1.6E-10 3.5E-15 118.6 24.8 285 183-570 334-621 (638)
66 KOG1173 Anaphase-promoting com 99.4 2.3E-08 5.1E-13 100.7 38.8 99 537-637 241-339 (611)
67 KOG1173 Anaphase-promoting com 99.4 5.1E-08 1.1E-12 98.3 39.7 518 131-805 15-532 (611)
68 KOG4162 Predicted calmodulin-b 99.3 1.1E-06 2.3E-11 92.6 50.4 509 63-639 228-783 (799)
69 PF12569 NARP1: NMDA receptor- 99.3 3.1E-08 6.8E-13 104.9 39.6 298 62-369 4-331 (517)
70 PRK12370 invasion protein regu 99.3 4.8E-10 1E-14 123.8 26.7 248 77-337 276-535 (553)
71 KOG3616 Selective LIM binding 99.3 9.3E-07 2E-11 91.7 47.4 441 48-634 480-932 (1636)
72 KOG3617 WD40 and TPR repeat-co 99.3 1.1E-07 2.4E-12 99.7 40.6 421 96-635 725-1170(1416)
73 KOG1127 TPR repeat-containing 99.3 5.1E-07 1.1E-11 97.2 46.5 667 147-895 473-1176(1238)
74 KOG1129 TPR repeat-containing 99.3 5E-10 1.1E-14 104.0 18.6 231 579-895 227-459 (478)
75 PRK12370 invasion protein regu 99.3 1.4E-09 3.1E-14 120.0 25.9 217 74-302 316-535 (553)
76 KOG1129 TPR repeat-containing 99.2 8.2E-10 1.8E-14 102.7 19.1 270 60-336 177-457 (478)
77 TIGR02521 type_IV_pilW type IV 99.2 1.7E-09 3.7E-14 106.8 23.2 190 72-300 41-230 (234)
78 KOG3617 WD40 and TPR repeat-co 99.2 9.7E-07 2.1E-11 92.9 43.0 229 73-335 739-994 (1416)
79 TIGR02521 type_IV_pilW type IV 99.2 7.5E-09 1.6E-13 102.2 24.9 168 724-894 64-232 (234)
80 KOG2376 Signal recognition par 99.2 2E-06 4.3E-11 87.7 39.7 136 520-658 356-505 (652)
81 KOG1174 Anaphase-promoting com 99.2 2.2E-06 4.9E-11 83.1 37.8 303 537-895 191-501 (564)
82 PF12569 NARP1: NMDA receptor- 99.2 2.6E-06 5.6E-11 90.7 42.5 128 507-637 196-332 (517)
83 COG3063 PilF Tfp pilus assembl 99.1 3.1E-08 6.7E-13 88.3 23.0 193 71-267 44-236 (250)
84 KOG2376 Signal recognition par 99.1 2.8E-06 6.1E-11 86.6 39.4 148 485-636 356-517 (652)
85 PF13041 PPR_2: PPR repeat fam 99.1 1.4E-10 3E-15 80.1 6.1 49 201-249 1-49 (50)
86 KOG1840 Kinesin light chain [C 99.1 3.3E-08 7.1E-13 103.3 25.7 244 576-892 200-477 (508)
87 PF13041 PPR_2: PPR repeat fam 99.1 2.9E-10 6.4E-15 78.4 6.1 49 723-771 1-49 (50)
88 KOG1840 Kinesin light chain [C 99.1 6E-08 1.3E-12 101.4 24.7 242 542-857 201-477 (508)
89 PRK11189 lipoprotein NlpI; Pro 99.0 1.4E-07 3E-12 95.0 25.2 194 99-303 66-266 (296)
90 PRK11189 lipoprotein NlpI; Pro 99.0 1.1E-07 2.3E-12 95.8 24.2 220 109-338 38-266 (296)
91 KOG0624 dsRNA-activated protei 99.0 1.2E-05 2.7E-10 76.1 34.7 331 99-535 40-371 (504)
92 KOG1174 Anaphase-promoting com 99.0 1.2E-05 2.6E-10 78.3 35.3 289 145-474 209-497 (564)
93 COG3063 PilF Tfp pilus assembl 99.0 4E-08 8.7E-13 87.6 17.2 165 727-896 37-204 (250)
94 KOG4340 Uncharacterized conser 98.9 1.6E-06 3.5E-11 80.1 25.1 307 73-438 21-335 (459)
95 cd05804 StaR_like StaR_like; a 98.9 4.2E-06 9.2E-11 88.3 32.1 261 69-336 13-292 (355)
96 KOG4340 Uncharacterized conser 98.9 6.5E-06 1.4E-10 76.3 28.0 359 133-568 11-374 (459)
97 KOG2053 Mitochondrial inherita 98.9 0.00029 6.2E-09 76.2 43.6 497 71-637 52-606 (932)
98 KOG0548 Molecular co-chaperone 98.9 3.8E-05 8.3E-10 77.9 35.2 429 71-605 11-456 (539)
99 cd05804 StaR_like StaR_like; a 98.9 5.7E-06 1.2E-10 87.3 31.9 264 70-337 51-336 (355)
100 KOG0624 dsRNA-activated protei 98.9 2.1E-05 4.5E-10 74.6 30.7 309 417-788 42-369 (504)
101 KOG1125 TPR repeat-containing 98.8 4.6E-07 1E-11 92.1 20.9 249 73-330 296-564 (579)
102 KOG0548 Molecular co-chaperone 98.8 1.2E-06 2.5E-11 88.5 23.2 400 478-895 10-456 (539)
103 KOG1125 TPR repeat-containing 98.8 5.2E-07 1.1E-11 91.8 20.5 202 56-266 313-526 (579)
104 PLN02789 farnesyltranstransfer 98.8 3E-06 6.4E-11 85.0 24.6 221 58-285 33-267 (320)
105 PF04733 Coatomer_E: Coatomer 98.7 4.7E-07 1E-11 89.4 16.1 248 73-337 12-265 (290)
106 KOG2053 Mitochondrial inherita 98.7 0.0011 2.3E-08 72.0 48.6 223 73-303 20-256 (932)
107 PRK04841 transcriptional regul 98.7 0.00017 3.6E-09 87.0 39.4 311 509-860 413-761 (903)
108 KOG1914 mRNA cleavage and poly 98.6 0.0011 2.3E-08 67.7 37.8 417 445-893 17-500 (656)
109 PLN02789 farnesyltranstransfer 98.6 1.8E-05 3.9E-10 79.4 24.1 223 4-250 31-267 (320)
110 PF04733 Coatomer_E: Coatomer 98.6 3E-06 6.5E-11 83.8 16.7 152 733-895 110-266 (290)
111 KOG1070 rRNA processing protei 98.5 2.4E-05 5.3E-10 87.9 24.3 218 120-344 1447-1670(1710)
112 COG5010 TadD Flp pilus assembl 98.5 8E-06 1.7E-10 75.2 16.9 160 101-265 70-229 (257)
113 TIGR03302 OM_YfiO outer membra 98.5 7.5E-06 1.6E-10 80.2 18.5 168 724-895 32-233 (235)
114 PRK04841 transcriptional regul 98.5 0.00046 1E-08 83.2 37.1 20 421-440 661-680 (903)
115 KOG1914 mRNA cleavage and poly 98.5 0.0024 5.2E-08 65.2 41.2 213 556-815 309-530 (656)
116 COG5010 TadD Flp pilus assembl 98.4 1.9E-05 4.1E-10 72.8 17.3 160 136-300 70-229 (257)
117 KOG1070 rRNA processing protei 98.4 8E-05 1.7E-09 84.0 25.3 241 81-329 1443-1692(1710)
118 KOG1128 Uncharacterized conser 98.4 1.7E-05 3.7E-10 83.3 19.0 54 576-638 399-452 (777)
119 PF12854 PPR_1: PPR repeat 98.4 3.4E-07 7.4E-12 56.2 3.9 32 755-786 2-33 (34)
120 PF12854 PPR_1: PPR repeat 98.4 3.3E-07 7.1E-12 56.2 3.7 32 198-229 2-33 (34)
121 TIGR03302 OM_YfiO outer membra 98.4 3.1E-05 6.7E-10 75.9 19.3 57 245-301 173-231 (235)
122 PRK10370 formate-dependent nit 98.4 5.4E-05 1.2E-09 70.6 18.8 120 773-896 52-175 (198)
123 PRK15359 type III secretion sy 98.3 2.3E-05 5E-10 68.9 15.0 123 747-876 15-137 (144)
124 PRK10370 formate-dependent nit 98.3 5.6E-05 1.2E-09 70.5 18.0 152 140-308 24-178 (198)
125 PRK15179 Vi polysaccharide bio 98.3 4.6E-05 1E-09 84.7 20.3 193 47-244 30-228 (694)
126 KOG1128 Uncharacterized conser 98.3 8.4E-05 1.8E-09 78.3 20.3 185 414-603 425-615 (777)
127 PRK15359 type III secretion sy 98.3 4.7E-05 1E-09 67.0 15.7 109 189-303 14-122 (144)
128 PRK15179 Vi polysaccharide bio 98.3 0.00013 2.9E-09 81.1 22.7 165 164-339 82-247 (694)
129 PRK14720 transcript cleavage f 98.3 0.00045 9.7E-09 77.7 26.1 272 131-497 30-304 (906)
130 COG4783 Putative Zn-dependent 98.2 0.00025 5.5E-09 71.5 21.2 127 99-230 308-435 (484)
131 COG4783 Putative Zn-dependent 98.2 0.00039 8.6E-09 70.2 22.2 146 727-895 308-455 (484)
132 PRK14720 transcript cleavage f 98.2 0.00078 1.7E-08 75.8 26.2 168 411-638 29-197 (906)
133 KOG3060 Uncharacterized conser 98.2 0.00035 7.6E-09 63.9 19.0 187 705-896 27-222 (289)
134 KOG3081 Vesicle coat complex C 98.2 0.00076 1.7E-08 62.3 20.7 217 105-338 16-237 (299)
135 TIGR02552 LcrH_SycD type III s 98.1 6.4E-05 1.4E-09 66.0 13.7 108 59-171 14-121 (135)
136 KOG3081 Vesicle coat complex C 98.1 0.0021 4.5E-08 59.6 22.9 121 733-858 145-270 (299)
137 PRK15363 pathogenicity island 98.1 0.00012 2.5E-09 62.9 14.0 128 22-160 3-131 (157)
138 KOG3060 Uncharacterized conser 98.1 0.0015 3.3E-08 59.9 21.2 161 102-268 57-221 (289)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.6E-05 1.9E-09 76.0 14.6 121 766-892 175-295 (395)
140 TIGR02552 LcrH_SycD type III s 98.1 7.3E-05 1.6E-09 65.7 12.3 98 796-895 18-115 (135)
141 PF09976 TPR_21: Tetratricopep 98.0 0.00016 3.5E-09 64.0 13.1 125 762-891 14-144 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00043 9.4E-09 71.0 14.7 122 173-300 174-295 (395)
143 PF07079 DUF1347: Protein of u 97.8 0.052 1.1E-06 54.7 42.3 363 417-870 132-530 (549)
144 TIGR00756 PPR pentatricopeptid 97.8 3.8E-05 8.2E-10 48.2 4.2 33 205-237 2-34 (35)
145 TIGR00756 PPR pentatricopeptid 97.7 5.3E-05 1.1E-09 47.5 4.3 33 727-759 2-34 (35)
146 PRK15363 pathogenicity island 97.7 0.00057 1.2E-08 58.8 11.6 96 796-894 36-132 (157)
147 PF09976 TPR_21: Tetratricopep 97.7 0.0013 2.7E-08 58.3 14.4 124 206-334 15-144 (145)
148 PF12895 Apc3: Anaphase-promot 97.7 3.3E-05 7.2E-10 60.6 3.5 81 808-890 2-83 (84)
149 KOG2041 WD40 repeat protein [G 97.7 0.043 9.4E-07 58.1 26.4 177 129-332 689-876 (1189)
150 PF13812 PPR_3: Pentatricopept 97.7 7E-05 1.5E-09 46.5 4.1 32 205-236 3-34 (34)
151 PF13812 PPR_3: Pentatricopept 97.7 7.5E-05 1.6E-09 46.4 4.1 32 727-758 3-34 (34)
152 PF14938 SNAP: Soluble NSF att 97.6 0.011 2.4E-07 59.3 21.0 124 731-856 120-260 (282)
153 PRK10866 outer membrane biogen 97.6 0.015 3.3E-07 56.3 21.0 181 64-264 32-238 (243)
154 cd00189 TPR Tetratricopeptide 97.6 0.00073 1.6E-08 55.0 10.7 96 798-895 3-98 (100)
155 PF12895 Apc3: Anaphase-promot 97.6 0.00011 2.4E-09 57.7 5.1 81 75-157 2-83 (84)
156 COG3898 Uncharacterized membra 97.6 0.093 2E-06 51.8 28.9 301 507-828 84-396 (531)
157 COG4700 Uncharacterized protei 97.6 0.0067 1.5E-07 52.8 15.8 134 756-893 85-221 (251)
158 PF10037 MRP-S27: Mitochondria 97.5 0.0018 3.9E-08 66.8 14.1 123 129-251 63-186 (429)
159 KOG0550 Molecular chaperone (D 97.5 0.088 1.9E-06 52.5 24.4 270 481-789 60-350 (486)
160 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0014 2.9E-08 56.0 11.4 96 797-895 4-106 (119)
161 PF14938 SNAP: Soluble NSF att 97.5 0.013 2.8E-07 58.8 19.4 61 206-266 158-224 (282)
162 COG4700 Uncharacterized protei 97.5 0.012 2.7E-07 51.2 16.0 103 95-197 87-189 (251)
163 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0024 5.3E-08 54.4 12.3 94 728-823 5-104 (119)
164 CHL00033 ycf3 photosystem I as 97.4 0.0036 7.8E-08 57.2 13.7 84 73-157 46-138 (168)
165 PF10037 MRP-S27: Mitochondria 97.4 0.002 4.3E-08 66.5 12.9 115 724-838 65-181 (429)
166 PLN03088 SGT1, suppressor of 97.4 0.0016 3.5E-08 67.4 12.1 86 73-160 13-98 (356)
167 KOG0553 TPR repeat-containing 97.4 0.0012 2.5E-08 62.6 9.8 94 73-171 92-185 (304)
168 COG3898 Uncharacterized membra 97.4 0.17 3.7E-06 50.1 29.5 307 543-910 85-408 (531)
169 PLN03088 SGT1, suppressor of 97.4 0.0011 2.5E-08 68.5 10.7 108 766-877 8-116 (356)
170 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.22 4.7E-06 50.3 35.7 476 118-656 30-546 (660)
171 PF01535 PPR: PPR repeat; Int 97.3 0.00029 6.3E-09 42.5 3.5 29 205-233 2-30 (31)
172 PF08579 RPM2: Mitochondrial r 97.3 0.0033 7.1E-08 49.9 9.7 40 732-771 32-72 (120)
173 cd00189 TPR Tetratricopeptide 97.3 0.0034 7.4E-08 50.9 11.0 93 206-300 3-95 (100)
174 KOG0550 Molecular chaperone (D 97.3 0.12 2.6E-06 51.6 22.1 271 60-338 45-351 (486)
175 COG4235 Cytochrome c biogenesi 97.3 0.01 2.2E-07 56.9 14.5 100 794-895 155-257 (287)
176 KOG1130 Predicted G-alpha GTPa 97.2 0.0042 9.1E-08 61.1 11.9 134 762-895 197-345 (639)
177 PF01535 PPR: PPR repeat; Int 97.2 0.00043 9.3E-09 41.8 3.5 29 727-755 2-30 (31)
178 PRK15331 chaperone protein Sic 97.2 0.012 2.5E-07 51.2 13.2 91 801-893 43-133 (165)
179 PF05843 Suf: Suppressor of fo 97.2 0.0067 1.4E-07 60.5 13.8 130 99-232 3-136 (280)
180 PF08579 RPM2: Mitochondrial r 97.2 0.005 1.1E-07 48.9 9.8 77 208-284 30-115 (120)
181 PF05843 Suf: Suppressor of fo 97.2 0.007 1.5E-07 60.3 13.7 130 506-638 2-135 (280)
182 PF13432 TPR_16: Tetratricopep 97.2 0.00091 2E-08 49.3 5.5 58 837-895 4-61 (65)
183 PRK02603 photosystem I assembl 97.2 0.016 3.4E-07 53.2 14.8 88 726-815 36-126 (172)
184 PF13525 YfiO: Outer membrane 97.2 0.083 1.8E-06 49.9 19.8 55 73-127 16-72 (203)
185 PRK10153 DNA-binding transcrip 97.1 0.015 3.3E-07 63.1 16.5 135 129-268 334-483 (517)
186 PF12688 TPR_5: Tetratrico pep 97.1 0.01 2.2E-07 49.4 11.8 59 102-160 6-66 (120)
187 KOG1130 Predicted G-alpha GTPa 97.1 0.0048 1E-07 60.7 10.9 133 726-858 196-343 (639)
188 PRK02603 photosystem I assembl 97.1 0.0064 1.4E-07 55.8 11.5 90 762-853 37-129 (172)
189 PF12688 TPR_5: Tetratrico pep 97.1 0.0097 2.1E-07 49.6 11.3 91 766-858 7-103 (120)
190 KOG2041 WD40 repeat protein [G 97.1 0.55 1.2E-05 50.3 30.7 55 503-566 850-904 (1189)
191 PF13414 TPR_11: TPR repeat; P 97.1 0.00096 2.1E-08 50.0 5.0 64 830-894 3-67 (69)
192 KOG2796 Uncharacterized conser 97.1 0.075 1.6E-06 49.4 17.4 240 96-347 68-323 (366)
193 PF03704 BTAD: Bacterial trans 97.1 0.008 1.7E-07 53.4 11.5 121 770-908 16-144 (146)
194 COG4235 Cytochrome c biogenesi 97.1 0.039 8.4E-07 53.1 16.2 128 186-318 140-270 (287)
195 KOG2796 Uncharacterized conser 97.0 0.081 1.7E-06 49.2 17.3 61 135-196 180-240 (366)
196 CHL00033 ycf3 photosystem I as 97.0 0.0051 1.1E-07 56.2 10.2 62 762-823 37-100 (168)
197 PRK10866 outer membrane biogen 97.0 0.12 2.5E-06 50.2 19.7 58 278-335 180-239 (243)
198 KOG0553 TPR repeat-containing 97.0 0.0075 1.6E-07 57.3 10.9 128 733-866 89-222 (304)
199 PRK10153 DNA-binding transcrip 97.0 0.032 7E-07 60.6 17.3 136 720-859 332-482 (517)
200 PF06239 ECSIT: Evolutionarily 96.9 0.014 3E-07 53.0 11.0 103 235-358 44-153 (228)
201 PF07079 DUF1347: Protein of u 96.9 0.63 1.4E-05 47.4 42.2 80 751-837 447-532 (549)
202 PF14559 TPR_19: Tetratricopep 96.9 0.003 6.6E-08 47.1 6.0 52 180-232 3-54 (68)
203 PF14559 TPR_19: Tetratricopep 96.9 0.0046 9.9E-08 46.1 6.8 50 3-70 1-50 (68)
204 PF13371 TPR_9: Tetratricopept 96.8 0.0033 7.2E-08 47.7 6.1 58 838-896 3-60 (73)
205 PF13432 TPR_16: Tetratricopep 96.8 0.0047 1E-07 45.4 6.7 57 175-232 4-60 (65)
206 PF13414 TPR_11: TPR repeat; P 96.8 0.0038 8.3E-08 46.7 6.2 63 97-160 3-66 (69)
207 PF04840 Vps16_C: Vps16, C-ter 96.7 0.81 1.7E-05 46.3 25.5 109 762-890 179-287 (319)
208 PF06239 ECSIT: Evolutionarily 96.7 0.02 4.3E-07 52.1 10.5 110 445-590 44-153 (228)
209 PRK15331 chaperone protein Sic 96.6 0.032 7E-07 48.5 10.8 86 73-160 48-133 (165)
210 COG4105 ComL DNA uptake lipopr 96.5 0.81 1.8E-05 43.3 21.3 184 63-265 33-231 (254)
211 KOG1538 Uncharacterized conser 96.5 0.22 4.7E-06 52.6 17.4 79 240-331 749-827 (1081)
212 PF13525 YfiO: Outer membrane 96.4 0.27 5.9E-06 46.3 17.1 47 766-812 147-195 (203)
213 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.4 3.1E-05 44.8 40.6 130 706-841 413-546 (660)
214 PF13281 DUF4071: Domain of un 96.3 0.67 1.5E-05 47.2 19.9 169 727-897 143-337 (374)
215 PRK10803 tol-pal system protei 96.3 0.037 8.1E-07 54.0 10.9 95 763-859 146-246 (263)
216 PRK10803 tol-pal system protei 96.2 0.07 1.5E-06 52.1 12.0 97 726-824 144-246 (263)
217 PF04840 Vps16_C: Vps16, C-ter 96.0 2 4.4E-05 43.5 32.5 113 689-821 176-288 (319)
218 KOG4555 TPR repeat-containing 96.0 0.06 1.3E-06 43.9 8.5 91 769-860 52-145 (175)
219 PF03704 BTAD: Bacterial trans 96.0 0.23 4.9E-06 44.0 13.6 70 507-577 64-138 (146)
220 KOG1585 Protein required for f 95.9 0.28 6.2E-06 45.3 13.2 205 99-331 33-250 (308)
221 KOG1538 Uncharacterized conser 95.9 0.54 1.2E-05 49.8 16.9 89 138-238 709-806 (1081)
222 PF13371 TPR_9: Tetratricopept 95.9 0.045 9.8E-07 41.3 7.3 53 178-231 5-57 (73)
223 KOG2114 Vacuolar assembly/sort 95.8 4 8.7E-05 45.4 26.3 178 99-300 336-517 (933)
224 KOG4555 TPR repeat-containing 95.8 0.16 3.5E-06 41.6 10.0 96 64-160 45-143 (175)
225 PRK11619 lytic murein transgly 95.6 5.3 0.00012 45.1 28.2 340 482-914 45-390 (644)
226 PF08631 SPO22: Meiosis protei 95.6 2.9 6.2E-05 41.8 25.5 201 416-637 39-273 (278)
227 PRK11906 transcriptional regul 95.5 0.74 1.6E-05 47.7 16.2 112 78-192 320-431 (458)
228 PF08631 SPO22: Meiosis protei 95.5 3 6.6E-05 41.7 23.4 123 73-197 4-150 (278)
229 PF13281 DUF4071: Domain of un 95.4 2.5 5.3E-05 43.3 19.4 28 310-337 307-334 (374)
230 COG4785 NlpI Lipoprotein NlpI, 95.3 2.2 4.7E-05 38.9 16.5 51 76-127 79-129 (297)
231 PF12921 ATP13: Mitochondrial 95.3 0.25 5.5E-06 41.7 10.3 56 570-625 47-103 (126)
232 PF13424 TPR_12: Tetratricopep 95.3 0.049 1.1E-06 41.8 5.7 25 727-751 7-31 (78)
233 KOG1258 mRNA processing protei 95.2 5.4 0.00012 42.8 31.4 132 97-231 45-179 (577)
234 PF13424 TPR_12: Tetratricopep 95.2 0.06 1.3E-06 41.3 5.9 63 761-823 6-74 (78)
235 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.63 1.4E-05 48.2 14.3 66 722-789 72-141 (453)
236 COG3118 Thioredoxin domain-con 95.1 0.95 2.1E-05 43.7 14.3 141 735-879 144-286 (304)
237 KOG0543 FKBP-type peptidyl-pro 95.1 0.44 9.6E-06 48.0 12.7 96 797-894 259-355 (397)
238 PF12921 ATP13: Mitochondrial 95.1 0.28 6E-06 41.5 9.8 49 790-838 47-96 (126)
239 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.093 2E-06 54.0 8.2 98 794-897 74-177 (453)
240 PF09205 DUF1955: Domain of un 95.0 1.8 3.8E-05 36.0 13.6 64 833-897 89-152 (161)
241 COG1729 Uncharacterized protei 94.9 0.32 7E-06 46.4 10.9 87 772-858 153-243 (262)
242 COG3118 Thioredoxin domain-con 94.9 1.4 3.1E-05 42.5 15.1 150 73-227 145-296 (304)
243 KOG2610 Uncharacterized conser 94.9 0.6 1.3E-05 45.4 12.5 151 702-855 115-272 (491)
244 KOG0543 FKBP-type peptidyl-pro 94.8 0.96 2.1E-05 45.7 14.2 63 506-569 258-320 (397)
245 COG1729 Uncharacterized protei 94.7 0.51 1.1E-05 45.1 11.5 97 100-197 145-244 (262)
246 PF13431 TPR_17: Tetratricopep 94.7 0.026 5.7E-07 34.5 2.1 32 853-885 2-33 (34)
247 KOG1258 mRNA processing protei 94.6 7.7 0.00017 41.7 33.4 132 167-301 44-179 (577)
248 KOG1585 Protein required for f 94.5 4.2 9E-05 38.1 16.2 145 135-297 94-251 (308)
249 PF06552 TOM20_plant: Plant sp 94.4 1.1 2.4E-05 39.7 12.1 119 8-160 6-135 (186)
250 PF10300 DUF3808: Protein of u 94.4 1.3 2.8E-05 48.0 15.5 115 775-892 248-374 (468)
251 PF04053 Coatomer_WDAD: Coatom 94.4 0.62 1.3E-05 49.5 12.7 155 108-298 272-427 (443)
252 PF09205 DUF1955: Domain of un 94.4 2.6 5.6E-05 35.1 14.7 138 424-570 13-150 (161)
253 PF10300 DUF3808: Protein of u 94.1 3.4 7.4E-05 44.8 18.1 114 704-821 247-373 (468)
254 PRK11906 transcriptional regul 94.1 0.9 2E-05 47.1 12.7 146 740-890 273-432 (458)
255 KOG2114 Vacuolar assembly/sort 94.0 13 0.00028 41.7 24.4 118 206-333 337-456 (933)
256 COG4649 Uncharacterized protei 93.9 4.1 8.9E-05 35.8 14.2 124 73-197 69-196 (221)
257 PF13428 TPR_14: Tetratricopep 93.9 0.075 1.6E-06 35.1 3.2 24 836-859 7-30 (44)
258 PF13512 TPR_18: Tetratricopep 93.8 1.1 2.3E-05 38.4 10.6 72 73-144 21-94 (142)
259 smart00299 CLH Clathrin heavy 93.8 4.3 9.2E-05 35.5 15.2 126 172-320 11-137 (140)
260 PF04184 ST7: ST7 protein; In 93.7 5.9 0.00013 41.6 17.3 56 730-786 264-321 (539)
261 PF13512 TPR_18: Tetratricopep 93.7 1.2 2.7E-05 38.0 10.7 60 100-160 13-75 (142)
262 smart00299 CLH Clathrin heavy 93.6 3.1 6.7E-05 36.4 13.9 126 728-876 10-136 (140)
263 PF04184 ST7: ST7 protein; In 93.4 2.7 5.9E-05 43.8 14.4 59 138-196 265-323 (539)
264 PF04097 Nic96: Nup93/Nic96; 93.3 17 0.00038 41.1 26.1 88 512-604 265-356 (613)
265 KOG2610 Uncharacterized conser 93.2 1.8 4E-05 42.2 12.1 153 180-335 115-274 (491)
266 KOG1920 IkappaB kinase complex 93.1 22 0.00049 41.7 23.3 103 770-892 949-1053(1265)
267 PF13428 TPR_14: Tetratricopep 93.1 0.21 4.5E-06 32.9 4.3 29 99-127 3-31 (44)
268 COG2976 Uncharacterized protei 93.0 4 8.7E-05 36.9 13.1 127 762-895 56-189 (207)
269 COG4785 NlpI Lipoprotein NlpI, 92.8 6 0.00013 36.2 13.9 27 310-336 239-265 (297)
270 PF04053 Coatomer_WDAD: Coatom 92.7 2.5 5.4E-05 45.1 13.9 157 141-334 270-428 (443)
271 COG2909 MalT ATP-dependent tra 92.6 22 0.00048 40.4 27.3 272 47-338 349-648 (894)
272 COG0457 NrfG FOG: TPR repeat [ 92.6 11 0.00023 36.7 27.0 221 111-337 37-265 (291)
273 KOG3941 Intermediate in Toll s 92.5 1.1 2.4E-05 42.5 9.4 87 504-590 66-173 (406)
274 PF13170 DUF4003: Protein of u 92.4 8.7 0.00019 38.5 16.4 60 708-767 161-224 (297)
275 KOG1941 Acetylcholine receptor 92.2 2.8 6.1E-05 41.5 12.1 126 697-822 129-273 (518)
276 KOG2280 Vacuolar assembly/sort 92.2 22 0.00048 39.4 34.0 355 481-890 400-795 (829)
277 COG3629 DnrI DNA-binding trans 92.1 0.55 1.2E-05 45.6 7.4 61 796-857 154-214 (280)
278 KOG1941 Acetylcholine receptor 92.1 3.7 8E-05 40.7 12.7 202 99-300 45-273 (518)
279 COG4105 ComL DNA uptake lipopr 92.1 12 0.00025 35.9 19.3 53 587-639 46-100 (254)
280 KOG3941 Intermediate in Toll s 91.9 1.3 2.7E-05 42.1 9.0 103 724-845 66-173 (406)
281 PF13176 TPR_7: Tetratricopept 91.9 0.29 6.3E-06 30.4 3.6 27 867-893 1-27 (36)
282 COG4649 Uncharacterized protei 91.6 9.2 0.0002 33.7 15.0 124 178-301 68-195 (221)
283 PF13431 TPR_17: Tetratricopep 91.4 0.18 3.9E-06 30.9 2.2 32 85-117 2-33 (34)
284 KOG4234 TPR repeat-containing 91.3 1.3 2.8E-05 39.7 8.0 124 768-895 103-234 (271)
285 KOG1920 IkappaB kinase complex 91.0 39 0.00084 39.9 26.0 45 78-124 773-819 (1265)
286 PF13170 DUF4003: Protein of u 90.9 19 0.00041 36.2 17.8 132 112-245 77-224 (297)
287 PF02259 FAT: FAT domain; Int 90.5 25 0.00054 36.8 21.0 118 760-878 146-305 (352)
288 PF10602 RPN7: 26S proteasome 90.5 4.4 9.5E-05 37.0 11.2 97 726-822 37-140 (177)
289 PF07035 Mic1: Colon cancer-as 89.8 6.2 0.00013 35.2 11.1 139 744-896 13-151 (167)
290 COG0457 NrfG FOG: TPR repeat [ 89.7 20 0.00044 34.6 28.1 49 589-637 37-86 (291)
291 COG3629 DnrI DNA-binding trans 89.7 2.6 5.7E-05 41.1 9.5 59 171-230 156-214 (280)
292 PF04097 Nic96: Nup93/Nic96; 89.7 23 0.0005 40.1 18.4 18 733-750 266-283 (613)
293 KOG4234 TPR repeat-containing 89.3 2.7 5.8E-05 37.8 8.3 95 2-127 104-198 (271)
294 PF09613 HrpB1_HrpK: Bacterial 89.1 14 0.0003 32.6 12.4 19 213-231 54-72 (160)
295 PF10602 RPN7: 26S proteasome 89.1 4.8 0.0001 36.7 10.4 97 204-300 37-140 (177)
296 KOG4648 Uncharacterized conser 88.4 1.4 3.1E-05 43.0 6.6 89 106-197 106-194 (536)
297 PF13176 TPR_7: Tetratricopept 88.3 0.81 1.8E-05 28.4 3.4 24 100-123 2-25 (36)
298 PF07035 Mic1: Colon cancer-as 88.0 19 0.00042 32.2 13.8 132 119-265 16-147 (167)
299 PF07719 TPR_2: Tetratricopept 88.0 0.74 1.6E-05 28.0 3.1 30 866-895 2-31 (34)
300 KOG2280 Vacuolar assembly/sort 87.6 52 0.0011 36.7 35.5 346 231-635 425-795 (829)
301 PF07721 TPR_4: Tetratricopept 86.9 0.84 1.8E-05 25.8 2.6 24 866-889 2-25 (26)
302 KOG0276 Vesicle coat complex C 86.6 4.5 9.8E-05 43.1 9.4 132 134-299 616-747 (794)
303 COG2909 MalT ATP-dependent tra 86.5 67 0.0015 36.8 24.6 228 67-298 420-684 (894)
304 PF00515 TPR_1: Tetratricopept 86.2 1.1 2.3E-05 27.3 3.1 30 866-895 2-31 (34)
305 PRK11619 lytic murein transgly 86.1 69 0.0015 36.5 40.0 49 513-564 415-463 (644)
306 KOG1550 Extracellular protein 85.5 68 0.0015 36.0 24.7 116 521-641 228-359 (552)
307 PF09613 HrpB1_HrpK: Bacterial 85.5 25 0.00055 31.0 13.2 50 250-301 22-72 (160)
308 COG2976 Uncharacterized protei 85.4 24 0.00053 32.1 12.0 86 141-232 98-188 (207)
309 COG3947 Response regulator con 83.8 38 0.00083 33.0 13.1 72 542-614 281-357 (361)
310 TIGR03504 FimV_Cterm FimV C-te 83.1 2.4 5.3E-05 27.7 3.7 28 869-896 3-30 (44)
311 PF00515 TPR_1: Tetratricopept 83.0 2.3 5E-05 25.8 3.6 26 728-753 4-29 (34)
312 PF13181 TPR_8: Tetratricopept 82.7 2.3 4.9E-05 25.8 3.5 29 866-894 2-30 (34)
313 PF13374 TPR_10: Tetratricopep 82.4 2.2 4.8E-05 27.4 3.6 29 866-894 3-31 (42)
314 KOG4570 Uncharacterized conser 82.3 10 0.00022 37.1 8.9 124 696-823 25-163 (418)
315 TIGR02561 HrpB1_HrpK type III 82.3 8 0.00017 33.3 7.5 94 796-895 8-107 (153)
316 KOG1464 COP9 signalosome, subu 81.9 50 0.0011 31.6 18.0 211 417-635 69-328 (440)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 81.8 10 0.00023 29.7 7.2 44 779-822 26-69 (103)
318 PF13174 TPR_6: Tetratricopept 81.6 1.9 4.1E-05 25.8 2.8 29 867-895 2-30 (33)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 80.8 7.9 0.00017 30.3 6.2 47 813-859 25-71 (103)
320 PF06552 TOM20_plant: Plant sp 80.6 11 0.00024 33.8 7.9 108 79-197 8-136 (186)
321 PF02284 COX5A: Cytochrome c o 80.5 21 0.00046 28.4 8.5 60 778-838 28-87 (108)
322 PF07719 TPR_2: Tetratricopept 80.0 4.2 9.2E-05 24.5 4.1 22 800-821 6-27 (34)
323 PF02259 FAT: FAT domain; Int 79.8 82 0.0018 32.9 21.4 62 692-753 148-212 (352)
324 KOG4570 Uncharacterized conser 79.1 32 0.0007 33.8 11.1 104 126-231 58-163 (418)
325 PF08424 NRDE-2: NRDE-2, neces 79.0 81 0.0018 32.4 17.7 80 78-159 47-129 (321)
326 KOG4648 Uncharacterized conser 79.0 3.7 7.9E-05 40.3 5.0 111 766-884 103-214 (536)
327 TIGR02561 HrpB1_HrpK type III 78.7 44 0.00095 29.1 11.6 51 145-197 23-73 (153)
328 PF02284 COX5A: Cytochrome c o 78.3 12 0.00026 29.7 6.6 46 81-126 29-74 (108)
329 KOG0276 Vesicle coat complex C 77.9 21 0.00045 38.5 10.3 57 504-569 665-721 (794)
330 KOG3364 Membrane protein invol 77.7 25 0.00055 29.7 8.6 69 827-895 29-101 (149)
331 PF11207 DUF2989: Protein of u 76.5 22 0.00047 32.7 8.9 73 742-815 123-198 (203)
332 KOG1550 Extracellular protein 76.5 1.4E+02 0.003 33.6 26.1 155 481-642 260-429 (552)
333 KOG2063 Vacuolar assembly/sort 76.1 1.7E+02 0.0036 34.4 19.3 41 620-660 601-641 (877)
334 KOG1586 Protein required for f 75.9 72 0.0016 30.1 20.1 17 807-823 166-182 (288)
335 COG1747 Uncharacterized N-term 75.5 1.2E+02 0.0026 32.4 20.3 173 695-876 71-250 (711)
336 PF13929 mRNA_stabil: mRNA sta 74.8 91 0.002 30.7 15.7 60 201-260 200-260 (292)
337 PF11207 DUF2989: Protein of u 74.5 25 0.00054 32.4 8.7 73 557-630 123-198 (203)
338 PF13374 TPR_10: Tetratricopep 74.3 7.5 0.00016 24.8 4.3 26 762-787 4-29 (42)
339 PRK09687 putative lyase; Provi 74.2 99 0.0021 30.9 25.5 38 418-458 240-277 (280)
340 PF13929 mRNA_stabil: mRNA sta 74.1 95 0.0021 30.6 15.1 137 111-247 142-287 (292)
341 KOG2063 Vacuolar assembly/sort 73.7 1.9E+02 0.0041 34.0 20.7 117 204-320 505-638 (877)
342 KOG1464 COP9 signalosome, subu 72.0 97 0.0021 29.8 24.6 194 554-788 41-260 (440)
343 PF07163 Pex26: Pex26 protein; 71.6 41 0.0009 32.6 9.6 85 732-818 90-181 (309)
344 KOG2471 TPR repeat-containing 70.9 1.5E+02 0.0032 31.5 20.5 109 513-623 248-382 (696)
345 PF13181 TPR_8: Tetratricopept 70.2 5.9 0.00013 23.9 2.8 27 727-753 3-29 (34)
346 COG4455 ImpE Protein of avirul 70.2 17 0.00038 33.5 6.6 62 797-860 3-65 (273)
347 PF04910 Tcf25: Transcriptiona 69.8 1.5E+02 0.0032 31.0 20.1 141 137-286 108-272 (360)
348 KOG4642 Chaperone-dependent E3 68.8 1.1E+02 0.0023 29.2 11.3 118 734-855 19-142 (284)
349 PF13174 TPR_6: Tetratricopept 68.7 9.8 0.00021 22.5 3.6 25 102-126 5-29 (33)
350 TIGR02508 type_III_yscG type I 68.7 30 0.00064 27.5 6.6 49 769-823 48-96 (115)
351 COG4455 ImpE Protein of avirul 67.9 40 0.00087 31.3 8.4 60 100-160 4-63 (273)
352 PF00637 Clathrin: Region in C 67.8 4 8.6E-05 35.9 2.3 54 766-819 13-66 (143)
353 PF10579 Rapsyn_N: Rapsyn N-te 67.7 16 0.00034 27.5 4.8 46 772-817 18-65 (80)
354 KOG2396 HAT (Half-A-TPR) repea 67.6 1.8E+02 0.0039 31.2 43.5 93 727-822 462-557 (568)
355 smart00028 TPR Tetratricopepti 67.4 9.6 0.00021 21.9 3.5 29 866-894 2-30 (34)
356 KOG0545 Aryl-hydrocarbon recep 67.3 62 0.0013 30.7 9.5 61 835-896 235-295 (329)
357 PF04190 DUF410: Protein of un 66.4 1.4E+02 0.003 29.5 14.4 157 703-894 3-170 (260)
358 PF07163 Pex26: Pex26 protein; 66.4 79 0.0017 30.8 10.3 89 102-191 88-181 (309)
359 PF10579 Rapsyn_N: Rapsyn N-te 66.0 16 0.00034 27.5 4.6 50 3-67 16-65 (80)
360 PRK09687 putative lyase; Provi 65.8 1.5E+02 0.0033 29.6 28.5 80 503-588 35-118 (280)
361 TIGR03504 FimV_Cterm FimV C-te 65.7 19 0.00041 23.7 4.4 23 581-603 5-27 (44)
362 KOG1586 Protein required for f 64.8 1.3E+02 0.0028 28.6 19.6 22 179-200 165-186 (288)
363 KOG2908 26S proteasome regulat 64.5 1.6E+02 0.0036 29.6 12.3 16 773-788 88-103 (380)
364 KOG4507 Uncharacterized conser 63.8 43 0.00094 36.0 8.9 89 248-337 617-705 (886)
365 PF08424 NRDE-2: NRDE-2, neces 63.8 1.8E+02 0.0039 29.9 17.1 136 504-641 18-185 (321)
366 KOG0292 Vesicle coat complex C 63.3 2.9E+02 0.0062 32.0 23.9 98 454-566 626-724 (1202)
367 TIGR02508 type_III_yscG type I 62.9 54 0.0012 26.1 7.0 71 51-127 27-98 (115)
368 KOG2066 Vacuolar assembly/sort 62.8 2.8E+02 0.006 31.7 28.8 24 417-440 509-532 (846)
369 PF00637 Clathrin: Region in C 62.7 4 8.7E-05 35.8 1.4 84 174-264 13-96 (143)
370 PRK15180 Vi polysaccharide bio 60.8 2.3E+02 0.0049 30.0 28.2 85 808-895 711-806 (831)
371 PF10345 Cohesin_load: Cohesin 60.8 3E+02 0.0066 31.5 41.0 185 151-336 40-253 (608)
372 KOG4642 Chaperone-dependent E3 60.7 1.6E+02 0.0034 28.2 11.2 120 698-821 18-143 (284)
373 PF09670 Cas_Cas02710: CRISPR- 58.9 67 0.0015 33.8 9.7 52 736-788 142-197 (379)
374 PF10345 Cohesin_load: Cohesin 58.6 3.3E+02 0.0072 31.2 40.1 186 79-265 38-252 (608)
375 KOG1308 Hsp70-interacting prot 58.6 8.5 0.00018 38.2 2.8 122 771-897 125-247 (377)
376 KOG0530 Protein farnesyltransf 58.2 1.8E+02 0.004 28.2 20.6 185 58-250 39-233 (318)
377 COG1747 Uncharacterized N-term 57.9 2.7E+02 0.0059 30.0 23.4 181 129-318 63-249 (711)
378 KOG2062 26S proteasome regulat 57.6 3.3E+02 0.0072 30.9 40.5 618 112-838 38-690 (929)
379 KOG3364 Membrane protein invol 56.6 1.3E+02 0.0028 25.8 8.9 21 839-859 80-100 (149)
380 KOG4507 Uncharacterized conser 55.5 46 0.001 35.9 7.5 56 766-822 648-703 (886)
381 PRK10941 hypothetical protein; 55.4 45 0.00099 32.9 7.2 57 838-895 189-245 (269)
382 PF14853 Fis1_TPR_C: Fis1 C-te 55.2 26 0.00057 24.2 3.9 33 4-36 12-44 (53)
383 TIGR02710 CRISPR-associated pr 55.0 1.5E+02 0.0033 30.9 11.0 51 770-820 140-196 (380)
384 PF14561 TPR_20: Tetratricopep 53.4 1.1E+02 0.0024 24.1 8.3 29 63-91 23-51 (90)
385 PF04190 DUF410: Protein of un 53.0 2.4E+02 0.0052 27.9 14.4 106 4-120 1-113 (260)
386 PF14669 Asp_Glu_race_2: Putat 52.8 1.9E+02 0.004 26.6 14.7 24 730-753 137-160 (233)
387 COG3947 Response regulator con 52.3 2.5E+02 0.0054 27.8 16.0 59 578-637 282-340 (361)
388 COG0790 FOG: TPR repeat, SEL1 51.3 2.7E+02 0.0059 28.0 22.2 151 73-233 52-221 (292)
389 PF07575 Nucleopor_Nup85: Nup8 51.2 4.1E+02 0.0089 30.1 17.8 18 51-68 154-171 (566)
390 PF13762 MNE1: Mitochondrial s 51.2 1.7E+02 0.0037 25.6 11.0 92 717-808 29-128 (145)
391 PF14561 TPR_20: Tetratricopep 50.8 1.2E+02 0.0026 23.9 7.8 31 96-126 21-51 (90)
392 KOG4077 Cytochrome c oxidase, 50.6 66 0.0014 26.9 6.0 41 782-822 71-111 (149)
393 KOG0403 Neoplastic transformat 50.3 3.3E+02 0.0072 28.7 21.1 421 79-555 102-589 (645)
394 PF09986 DUF2225: Uncharacteri 49.9 1.5E+02 0.0033 28.1 9.6 32 866-897 166-197 (214)
395 COG0790 FOG: TPR repeat, SEL1 49.4 2.9E+02 0.0063 27.8 21.3 187 703-902 54-274 (292)
396 COG4976 Predicted methyltransf 49.2 45 0.00097 31.3 5.5 61 71-133 4-64 (287)
397 PF11846 DUF3366: Domain of un 48.4 76 0.0016 29.6 7.4 34 790-823 139-172 (193)
398 KOG0376 Serine-threonine phosp 48.2 32 0.0007 36.2 5.1 98 73-175 15-112 (476)
399 KOG4077 Cytochrome c oxidase, 48.2 1.2E+02 0.0026 25.5 7.1 47 743-789 67-113 (149)
400 COG5187 RPN7 26S proteasome re 48.0 2.8E+02 0.0061 27.3 12.9 94 762-857 117-219 (412)
401 KOG2581 26S proteasome regulat 47.9 2.6E+02 0.0056 29.1 10.9 98 724-821 123-235 (493)
402 KOG2471 TPR repeat-containing 47.1 3.9E+02 0.0085 28.6 15.1 110 697-808 247-382 (696)
403 PF14853 Fis1_TPR_C: Fis1 C-te 47.1 86 0.0019 21.7 5.4 19 804-822 10-28 (53)
404 COG4259 Uncharacterized protei 46.8 57 0.0012 25.8 4.9 45 846-890 53-97 (121)
405 PF12862 Apc5: Anaphase-promot 46.5 67 0.0015 25.5 5.8 54 73-126 9-70 (94)
406 PF14689 SPOB_a: Sensor_kinase 46.3 53 0.0011 23.6 4.6 30 759-788 22-51 (62)
407 PF10255 Paf67: RNA polymerase 46.1 1E+02 0.0023 32.4 8.4 57 835-891 127-190 (404)
408 PF11663 Toxin_YhaV: Toxin wit 45.8 22 0.00047 30.1 2.8 31 737-769 107-137 (140)
409 PF03745 DUF309: Domain of unk 45.7 83 0.0018 22.6 5.4 48 107-154 9-61 (62)
410 KOG2422 Uncharacterized conser 45.7 4.5E+02 0.0098 28.9 13.7 186 7-212 252-459 (665)
411 PRK10941 hypothetical protein; 45.5 1.2E+02 0.0026 30.0 8.4 60 135-197 184-244 (269)
412 PF12862 Apc5: Anaphase-promot 45.4 93 0.002 24.7 6.5 27 868-894 44-70 (94)
413 COG0735 Fur Fe2+/Zn2+ uptake r 45.3 1.1E+02 0.0023 26.9 7.3 58 751-809 12-69 (145)
414 COG5159 RPN6 26S proteasome re 45.1 3.1E+02 0.0068 26.9 17.9 134 725-858 84-234 (421)
415 KOG4279 Serine/threonine prote 44.4 2E+02 0.0043 32.4 10.2 186 707-897 180-398 (1226)
416 KOG0890 Protein kinase of the 44.4 9.2E+02 0.02 32.2 32.9 537 311-906 1244-1821(2382)
417 PF11838 ERAP1_C: ERAP1-like C 44.1 3.7E+02 0.0081 27.5 15.8 82 184-268 146-231 (324)
418 PRK12798 chemotaxis protein; R 43.8 4.2E+02 0.009 28.0 17.2 192 110-308 125-330 (421)
419 KOG1308 Hsp70-interacting prot 43.6 29 0.00063 34.7 3.8 92 108-203 125-217 (377)
420 PF11838 ERAP1_C: ERAP1-like C 42.7 3.9E+02 0.0085 27.4 20.0 111 148-263 146-262 (324)
421 KOG2908 26S proteasome regulat 42.7 3E+02 0.0065 27.9 10.2 88 102-189 80-178 (380)
422 PRK12798 chemotaxis protein; R 42.7 4.3E+02 0.0094 27.9 18.9 156 738-895 125-287 (421)
423 PF11848 DUF3368: Domain of un 42.1 96 0.0021 20.8 5.0 33 586-618 13-45 (48)
424 PF11848 DUF3368: Domain of un 41.8 1E+02 0.0023 20.7 5.2 32 806-837 13-44 (48)
425 PF10366 Vps39_1: Vacuolar sor 41.8 2E+02 0.0043 23.7 8.6 27 99-125 41-67 (108)
426 COG4941 Predicted RNA polymera 41.1 4E+02 0.0087 27.0 11.7 117 112-232 271-394 (415)
427 KOG0376 Serine-threonine phosp 41.0 29 0.00062 36.5 3.5 89 767-859 11-101 (476)
428 cd00280 TRFH Telomeric Repeat 40.5 1.9E+02 0.0041 26.3 7.8 20 803-822 119-138 (200)
429 PF07575 Nucleopor_Nup85: Nup8 40.4 5.9E+02 0.013 28.8 18.1 76 560-637 390-465 (566)
430 KOG2659 LisH motif-containing 40.2 3.3E+02 0.0073 25.9 10.5 98 722-822 23-130 (228)
431 cd00280 TRFH Telomeric Repeat 40.2 1.8E+02 0.0039 26.5 7.6 48 486-533 85-139 (200)
432 PHA02875 ankyrin repeat protei 39.8 4.1E+02 0.0089 28.5 12.5 9 179-187 76-84 (413)
433 PF09986 DUF2225: Uncharacteri 39.5 3.4E+02 0.0074 25.8 11.6 89 737-825 89-195 (214)
434 PF09670 Cas_Cas02710: CRISPR- 39.2 3E+02 0.0065 29.1 10.8 54 178-232 141-198 (379)
435 PF11663 Toxin_YhaV: Toxin wit 38.2 37 0.00081 28.7 3.1 33 21-55 106-138 (140)
436 PF04910 Tcf25: Transcriptiona 38.2 4.9E+02 0.011 27.2 21.0 31 607-637 37-67 (360)
437 PRK13342 recombination factor 38.1 5.4E+02 0.012 27.6 18.4 33 417-449 231-266 (413)
438 PF14689 SPOB_a: Sensor_kinase 37.8 1E+02 0.0022 22.1 5.0 21 546-566 29-49 (62)
439 KOG0686 COP9 signalosome, subu 36.8 5.2E+02 0.011 27.1 14.4 63 506-568 151-215 (466)
440 KOG0551 Hsp90 co-chaperone CNS 36.8 2.7E+02 0.0058 28.2 8.9 88 767-856 88-179 (390)
441 KOG4567 GTPase-activating prot 36.7 3.7E+02 0.0081 26.9 9.7 43 746-788 264-306 (370)
442 PF10516 SHNi-TPR: SHNi-TPR; 36.1 77 0.0017 20.0 3.6 29 866-894 2-30 (38)
443 cd08812 CARD_RIG-I_like Caspas 36.1 74 0.0016 24.9 4.3 37 7-64 48-85 (88)
444 KOG2297 Predicted translation 35.8 4.6E+02 0.0099 26.2 18.1 161 70-258 174-341 (412)
445 PF13934 ELYS: Nuclear pore co 35.1 4.2E+02 0.009 25.5 10.3 96 107-214 88-183 (226)
446 PF11817 Foie-gras_1: Foie gra 35.0 2E+02 0.0043 28.2 8.2 56 800-855 183-243 (247)
447 PHA02537 M terminase endonucle 34.6 4.2E+02 0.0092 25.4 10.0 27 766-792 89-115 (230)
448 PRK00971 glutaminase; Provisio 34.6 5E+02 0.011 26.3 12.3 22 630-654 81-102 (307)
449 PF11846 DUF3366: Domain of un 34.0 1.2E+02 0.0026 28.2 6.4 33 200-232 141-173 (193)
450 KOG0292 Vesicle coat complex C 33.9 2.3E+02 0.0049 32.8 8.9 177 110-337 606-782 (1202)
451 KOG0545 Aryl-hydrocarbon recep 33.2 4.5E+02 0.0098 25.3 10.9 55 105-160 238-292 (329)
452 KOG4521 Nuclear pore complex, 32.7 7.2E+02 0.016 30.2 12.6 129 134-267 985-1132(1480)
453 KOG0687 26S proteasome regulat 32.5 5.5E+02 0.012 26.0 14.3 94 762-857 106-208 (393)
454 KOG2659 LisH motif-containing 32.4 4.5E+02 0.0098 25.1 11.5 106 679-786 15-129 (228)
455 smart00386 HAT HAT (Half-A-TPR 32.4 93 0.002 17.9 3.7 28 76-104 1-28 (33)
456 KOG0686 COP9 signalosome, subu 32.4 6.1E+02 0.013 26.6 13.6 51 73-123 161-213 (466)
457 KOG3807 Predicted membrane pro 31.6 5.5E+02 0.012 25.8 10.3 147 49-208 205-351 (556)
458 KOG4279 Serine/threonine prote 31.4 8.5E+02 0.018 27.9 17.1 46 593-638 181-229 (1226)
459 PRK12357 glutaminase; Reviewed 31.1 4.7E+02 0.01 26.6 9.8 22 630-654 90-111 (326)
460 cd08789 CARD_IPS-1_RIG-I Caspa 30.9 98 0.0021 24.0 4.2 38 6-65 45-82 (84)
461 PRK13342 recombination factor 29.8 7.3E+02 0.016 26.7 19.1 37 738-774 243-279 (413)
462 PRK10564 maltose regulon perip 29.4 90 0.002 31.0 4.6 30 206-235 260-289 (303)
463 COG0735 Fur Fe2+/Zn2+ uptake r 29.4 2.8E+02 0.006 24.4 7.3 26 208-233 25-50 (145)
464 PRK10564 maltose regulon perip 29.2 1E+02 0.0022 30.6 4.9 29 764-792 261-289 (303)
465 KOG0991 Replication factor C, 28.8 5.3E+02 0.011 24.7 11.7 137 691-836 131-279 (333)
466 KOG2300 Uncharacterized conser 28.7 7.7E+02 0.017 26.6 34.9 130 506-637 89-239 (629)
467 cd08819 CARD_MDA5_2 Caspase ac 28.4 2.9E+02 0.0063 21.6 7.3 66 257-328 21-86 (88)
468 PF09454 Vps23_core: Vps23 cor 28.3 1.5E+02 0.0033 21.6 4.5 50 95-145 6-55 (65)
469 PF10366 Vps39_1: Vacuolar sor 28.0 3.4E+02 0.0074 22.3 8.2 26 543-568 42-67 (108)
470 cd08819 CARD_MDA5_2 Caspase ac 27.5 3E+02 0.0066 21.5 7.0 65 187-257 21-85 (88)
471 KOG2034 Vacuolar sorting prote 27.4 1.1E+03 0.023 27.9 26.0 302 452-796 362-703 (911)
472 KOG3824 Huntingtin interacting 27.4 1.9E+02 0.0042 28.5 6.3 51 73-124 127-177 (472)
473 COG5108 RPO41 Mitochondrial DN 27.4 4E+02 0.0087 29.8 9.1 90 243-335 33-130 (1117)
474 PRK09857 putative transposase; 27.0 3.2E+02 0.007 27.5 8.3 58 841-899 217-274 (292)
475 PF11123 DNA_Packaging_2: DNA 26.9 1.8E+02 0.0038 21.6 4.4 33 183-216 12-44 (82)
476 PF02184 HAT: HAT (Half-A-TPR) 26.2 1.5E+02 0.0034 17.9 3.4 21 776-798 3-23 (32)
477 PF09454 Vps23_core: Vps23 cor 26.2 1.7E+02 0.0036 21.4 4.4 48 573-621 6-53 (65)
478 PF12968 DUF3856: Domain of Un 26.0 4E+02 0.0086 22.4 12.9 50 772-821 21-81 (144)
479 KOG0551 Hsp90 co-chaperone CNS 26.0 4.2E+02 0.0092 26.9 8.3 86 72-158 91-179 (390)
480 PF11768 DUF3312: Protein of u 26.0 4.5E+02 0.0098 28.9 9.3 21 766-786 414-434 (545)
481 COG4259 Uncharacterized protei 25.4 3.6E+02 0.0077 21.6 7.3 41 710-750 57-97 (121)
482 KOG2066 Vacuolar assembly/sort 25.2 1.1E+03 0.024 27.3 28.4 72 141-219 365-439 (846)
483 PF15297 CKAP2_C: Cytoskeleton 25.1 7E+02 0.015 25.6 9.8 64 741-806 119-186 (353)
484 COG5108 RPO41 Mitochondrial DN 24.8 3.6E+02 0.0078 30.1 8.3 78 730-807 33-115 (1117)
485 COG4976 Predicted methyltransf 24.8 1.5E+02 0.0032 28.1 4.8 58 805-865 5-63 (287)
486 KOG4521 Nuclear pore complex, 24.7 1.4E+03 0.029 28.1 14.2 80 169-255 984-1071(1480)
487 PF10475 DUF2450: Protein of u 24.6 4.6E+02 0.0099 26.5 8.9 114 731-855 104-222 (291)
488 PF15297 CKAP2_C: Cytoskeleton 24.5 3.3E+02 0.0072 27.8 7.5 68 807-876 114-186 (353)
489 PRK14963 DNA polymerase III su 24.5 7.5E+02 0.016 27.4 11.1 34 828-862 240-273 (504)
490 PF11817 Foie-gras_1: Foie gra 24.2 2.8E+02 0.006 27.2 7.2 56 581-636 184-244 (247)
491 KOG2582 COP9 signalosome, subu 24.2 8.1E+02 0.018 25.3 15.4 110 543-656 105-226 (422)
492 KOG2297 Predicted translation 24.1 7.4E+02 0.016 24.9 17.7 21 540-560 321-341 (412)
493 smart00777 Mad3_BUB1_I Mad3/BU 24.0 4.4E+02 0.0095 22.4 7.2 73 706-784 49-123 (125)
494 PF06957 COPI_C: Coatomer (COP 23.9 3E+02 0.0066 29.3 7.5 45 816-860 284-330 (422)
495 KOG0128 RNA-binding protein SA 23.9 1.2E+03 0.026 27.2 32.3 97 131-231 112-218 (881)
496 PRK11639 zinc uptake transcrip 23.8 4.3E+02 0.0093 23.9 7.8 63 816-879 12-74 (169)
497 KOG3824 Huntingtin interacting 23.7 1.1E+02 0.0024 30.1 4.0 34 3-36 126-159 (472)
498 PF10255 Paf67: RNA polymerase 23.6 6.7E+02 0.014 26.7 9.9 62 275-336 124-192 (404)
499 PF12968 DUF3856: Domain of Un 23.6 4.4E+02 0.0096 22.1 9.2 69 44-123 54-126 (144)
500 PF07720 TPR_3: Tetratricopept 23.6 1.2E+02 0.0027 18.8 2.9 23 867-889 3-25 (36)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-82 Score=737.20 Aligned_cols=680 Identities=17% Similarity=0.209 Sum_probs=646.4
Q ss_pred CCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHH
Q 043758 94 VPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKS 173 (918)
Q Consensus 94 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (918)
.|+..+++.++.+|++.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+..+.+.+++..+.+ .+..++...+++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~n~ 126 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS-SHPSLGVRLGNA 126 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHH-cCCCCCchHHHH
Confidence 4677799999999999999999999999999999999999999999999999999999999999998 788899999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043758 174 LFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 174 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 253 (918)
++.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999999975 49999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
+..+.+++..|.+.|+.||..++++|+.+|++.|+++.|.++|++|. .||..+||.+|.+|++.|++++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 48999999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCch
Q 043758 334 MLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLAN 413 (918)
Q Consensus 334 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 413 (918)
|...|+.||..||+.++.+|.+.++.+.+.+++..+.+.|..+ +.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-----------------------------------d~ 323 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV-----------------------------------DV 323 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-----------------------------------ch
Confidence 9999999999999999999999999988888887777766544 45
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
.+|+.++.+|++.|++++|..+|++|. .||..+|+.++.+|.+.| ++++|..+|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g----------------------~~~~A~~lf 377 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNG----------------------LPDKALETY 377 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCC----------------------CHHHHHHHH
Confidence 889999999999999999999999996 589999999999987654 677888899
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQP 573 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 573 (918)
++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~ 453 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----K 453 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974 6
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 043758 574 GSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVS 653 (918)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 653 (918)
|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|.+.|+.+.+.+++..+.+.|+.+|..++++|+.
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 889999999999999999999999999986 5899999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 043758 654 GVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFL 733 (918)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 733 (918)
+|++. |++++|.++|+.+ .||..+||++|.
T Consensus 533 ~y~k~---------------------------------------------G~~~~A~~~f~~~-----~~d~~s~n~lI~ 562 (857)
T PLN03077 533 LYVRC---------------------------------------------GRMNYAWNQFNSH-----EKDVVSWNILLT 562 (857)
T ss_pred HHHHc---------------------------------------------CCHHHHHHHHHhc-----CCChhhHHHHHH
Confidence 98874 9999999999876 689999999999
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChh
Q 043758 734 LLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNA-DGCVPDKTVYNTLLKGLCQAGRLS 812 (918)
Q Consensus 734 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~ 812 (918)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|+++
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999994 599999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 813 HVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMH 892 (918)
Q Consensus 813 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 892 (918)
+|.+++++|. +.|+..+|++|+.+|...|+.+.+....+++.+.. |.++..|..|+++|...|+|++|.++++.|+
T Consensus 643 eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 643 EAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999994 89999999999999999999999999999999886 8889999999999999999999999999999
Q ss_pred hCCCCCCccc
Q 043758 893 KRGRLPCTST 902 (918)
Q Consensus 893 ~~~~~~~~~~ 902 (918)
+.|+.+.+..
T Consensus 719 ~~g~~k~~g~ 728 (857)
T PLN03077 719 ENGLTVDPGC 728 (857)
T ss_pred HcCCCCCCCc
Confidence 9999987654
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5e-77 Score=693.58 Aligned_cols=713 Identities=18% Similarity=0.184 Sum_probs=650.2
Q ss_pred CcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHH
Q 043758 42 RFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFI 121 (918)
Q Consensus 42 ~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 121 (918)
.++..+++.++..+ .+.|++++|..+|+.+.+.+..|+..+|..+++++.+.+.++.+..++.
T Consensus 48 ~~~~~~~n~~i~~l-----------------~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 110 (857)
T PLN03077 48 SSSTHDSNSQLRAL-----------------CSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCS 110 (857)
T ss_pred ccchhhHHHHHHHH-----------------HhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHH
Confidence 44555677777777 5666677777778999998988999999999999999999999999999
Q ss_pred HHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCC
Q 043758 122 KICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYV 201 (918)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 201 (918)
.+...+..++...++.++..|++.|+.+.|.++|+.|.+ ||..+|+.++.+|++.|++++|.++|++|...|+.|
T Consensus 111 ~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P 185 (857)
T PLN03077 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185 (857)
T ss_pred HHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999889999999999999999999999999999964 799999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 281 (918)
|..||+.++.++...+++..+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|++++.
T Consensus 186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~ 261 (857)
T PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMIS 261 (857)
T ss_pred ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 578899999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHH
Q 043758 282 NYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQH 361 (918)
Q Consensus 282 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 361 (918)
+|++.|++++|.++|++|...|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.++.+.|+++.
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 043758 362 ALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVN 441 (918)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 441 (918)
|.++++.+.. ++..+|+.+|.+|++.|++++|+.+|++|.+
T Consensus 342 A~~vf~~m~~---------------------------------------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 342 AEKVFSRMET---------------------------------------KDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHhhCCC---------------------------------------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7776665432 2347899999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 043758 442 FGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRI 521 (918)
Q Consensus 442 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 521 (918)
.|+.||..+|+.++.+|++. |+++.|.++++.+.+.|+.|+..+|++|+.+|+++|++
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~----------------------g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 383 DNVSPDEITIASVLSACACL----------------------GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred hCCCCCceeHHHHHHHHhcc----------------------chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999998765 46778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 522 LEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRM 601 (918)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 601 (918)
++|.++|++|. .+|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+
T Consensus 441 ~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 441 DKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 99999999996 46889999999999999999999999999986 58999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHH
Q 043758 602 LADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFH 681 (918)
Q Consensus 602 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (918)
.+.|+.++..++++|+++|.+.|++++|.++|+.+ .||..+|++++.+|++.
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~----------------------- 567 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAH----------------------- 567 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHc-----------------------
Confidence 99999999999999999999999999999999987 78999999999999875
Q ss_pred HhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH-HcCCCCcH
Q 043758 682 KLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMK-REGLRPNQ 760 (918)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~ 760 (918)
|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. ..|+.|+.
T Consensus 568 ----------------------G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 568 ----------------------GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred ----------------------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999999999999999999999999999999999999999 67999999
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 043758 761 VTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK-ATYEHLLEC 839 (918)
Q Consensus 761 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 839 (918)
.+|+.++++|++.|++++|.+++++|. ++||..+|++|+.+|...|+.+.+....+++.+ +.|+. ..|..+...
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNL 700 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHH
Confidence 999999999999999999999999983 789999999999999999999999999988886 56754 456666679
Q ss_pred HHccCChhhHHHHHHHHHhCCCCCCcccHHHHH----HHHHhcC----C----HHHHHHHHHHHHhCCCCCCcc
Q 043758 840 FCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLL----NILCQEK----H----FHEAQIVLDVMHKRGRLPCTS 901 (918)
Q Consensus 840 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g----~----~~~A~~~~~~~~~~~~~~~~~ 901 (918)
|...|++++|.++.+.|.+.|+.+++.....-+ ..+...+ + ++.-.++..+|++.|..|+..
T Consensus 701 ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 999999999999999999999888764322111 1111111 1 233345777889999998754
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-65 Score=581.08 Aligned_cols=544 Identities=19% Similarity=0.223 Sum_probs=421.3
Q ss_pred CcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCC-CCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH
Q 043758 130 LNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKG-LVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
++...|..++..|++.|++++|+++|+.|.+ .+ ..++..+++.++.+|.+.|.+++|..+|+.|.. ||..+|+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4555666666666666777777777777766 34 344555556666666666677777766666654 46677777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC
Q 043758 209 LINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGE 288 (918)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 288 (918)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 77777777777777777777776666677777777777777777777777777777766666777777777777777777
Q ss_pred HHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCChhhHHHHHhhCCCCccHHHHHHHH
Q 043758 289 VDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA--NRVAPDHLLSFILLKNCPEGTELQHALMLL 366 (918)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 366 (918)
+++|.++|+.|...|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||.
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~----------------------- 579 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH----------------------- 579 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-----------------------
Confidence 777777777776666667777777777777777777777777777654 3455554
Q ss_pred HHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 043758 367 CEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRP 446 (918)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (918)
.+|+.+|.+|++.|++++|.++|+.|.+.|+.|
T Consensus 580 -----------------------------------------------vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 580 -----------------------------------------------ITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred -----------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 556788888899999999999999999999999
Q ss_pred CcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043758 447 LVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAED 526 (918)
Q Consensus 447 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 526 (918)
+..+|+.+|.+|++. |++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 613 ~~~tynsLI~ay~k~----------------------G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 613 TPEVYTIAVNSCSQK----------------------GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred ChHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999988655 4667788888888888999999999999999999999999999
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043758 527 MFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGF 606 (918)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 606 (918)
+|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999998899
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcC
Q 043758 607 VPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQG 686 (918)
Q Consensus 607 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (918)
.||..+|+.++.+|.+.|++++|.++++.|.+.|+.||..+|++++..|.+
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~----------------------------- 801 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR----------------------------- 801 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998855332
Q ss_pred cccccchhhhHHHHHhCCChhHHHHHHHHHH--hcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHH
Q 043758 687 TLVTRTKSTAFSAVFSNGKKGTVQKIVLKVK--DIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFC 764 (918)
Q Consensus 687 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 764 (918)
.++++.++.+.+. +.+...+.. +..+.|+.+|++|++.|+.||..+|+
T Consensus 802 ------------------~y~ka~~l~~~v~~f~~g~~~~~n------------~w~~~Al~lf~eM~~~Gi~Pd~~T~~ 851 (1060)
T PLN03218 802 ------------------RFEKACALGEPVVSFDSGRPQIEN------------KWTSWALMVYRETISAGTLPTMEVLS 851 (1060)
T ss_pred ------------------HHHHHhhhhhhhhhhhcccccccc------------chHHHHHHHHHHHHHCCCCCCHHHHH
Confidence 1111221111111 011111112 23456999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 043758 765 ILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA 831 (918)
Q Consensus 765 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 831 (918)
.++.++++.+..+.+..+++.|...+..|+..+|+.+++++.+. .++|..++++|.+.|+.|+..
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99988888889999999999888888888999999999987432 468999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-65 Score=578.03 Aligned_cols=548 Identities=17% Similarity=0.217 Sum_probs=461.1
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHH
Q 043758 200 YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGC-EPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLI 278 (918)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (918)
.++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|..++|..+++.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 34667788888888888888888888888887774 45666777788888888888888888887763 78888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCcc
Q 043758 279 MISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTE 358 (918)
Q Consensus 279 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 358 (918)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT------------- 509 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT------------- 509 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH-------------
Confidence 8888888888888888888888888888888888888888888888888888888888877777644
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHH
Q 043758 359 LQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQ 438 (918)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (918)
|+.+|.+|++.|++++|..+|+.
T Consensus 510 ---------------------------------------------------------ynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 510 ---------------------------------------------------------FGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred ---------------------------------------------------------HHHHHHHHHHCcCHHHHHHHHHH
Confidence 47777888888888888888888
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHH
Q 043758 439 LVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEV--RGPKPSVAIYDAIIGHLC 516 (918)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 516 (918)
|.+.|+.||..+|+.+|.+|++.| ++++|.++|++|.. .|+.||..+|++++.+|+
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G----------------------~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSG----------------------AVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 888888888888888888887654 55666677777765 567889999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHH
Q 043758 517 KEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCM 596 (918)
Q Consensus 517 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 596 (918)
+.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhh
Q 043758 597 YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGK 676 (918)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 676 (918)
+|+.|.+.|+.|+..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~------------------ 732 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG------------------ 732 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC------------------
Confidence 99999999999999999999999999999999999999998888999999999999888775
Q ss_pred HHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 043758 677 EMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGL 756 (918)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 756 (918)
|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.+++++|.+.|+
T Consensus 733 ---------------------------G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 733 ---------------------------NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred ---------------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 88888999999998899999999999999999999999999999999999999
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 757 RPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHL 836 (918)
Q Consensus 757 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (918)
.||..+|+.++..|. +.+++|..+.+.+..- .+ .......+..++|..+|++|.+.|+.||..||..+
T Consensus 786 ~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--~~--------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 786 KPNLVMCRCITGLCL--RRFEKACALGEPVVSF--DS--------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred CCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh--hc--------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 999999999987654 3566666665544432 10 01111122345699999999999999999999999
Q ss_pred HHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 043758 837 LECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPCTST 902 (918)
Q Consensus 837 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 902 (918)
+.++++.+....+..+++.+...+.+|+..+|+.|++++.+. .++|..++++|.+.|+.|+..+
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccc
Confidence 999999999999999999988777789999999999998432 4689999999999999999874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.5e-60 Score=537.60 Aligned_cols=479 Identities=18% Similarity=0.219 Sum_probs=427.1
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHH
Q 043758 200 YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG-CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLI 278 (918)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (918)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466789999999999999999999999998754 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCcc
Q 043758 279 MISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTE 358 (918)
Q Consensus 279 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 358 (918)
++.+|++.|+++.|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll-------- 231 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML-------- 231 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH--------
Confidence 99999999999999999999974 899999999999999999999999999998777766665553333
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHH
Q 043758 359 LQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQ 438 (918)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (918)
.++.+.|..
T Consensus 232 --------------------------------------------------------------~a~~~~~~~--------- 240 (697)
T PLN03081 232 --------------------------------------------------------------RASAGLGSA--------- 240 (697)
T ss_pred --------------------------------------------------------------HHHhcCCcH---------
Confidence 333333333
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043758 439 LVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKE 518 (918)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 518 (918)
+.+.+++..+.+.|..||..+|++++.+|+++
T Consensus 241 ------------------------------------------------~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 241 ------------------------------------------------RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred ------------------------------------------------HHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 33344444555556677777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHH
Q 043758 519 KRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYL 598 (918)
Q Consensus 519 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 598 (918)
|++++|.++|++|. .+|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 273 g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 88888888888885 46889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHH
Q 043758 599 DRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEM 678 (918)
Q Consensus 599 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (918)
..|.+.|+.||..+|+.|+++|.+.|++++|.++|++|.
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----------------------------------------- 387 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----------------------------------------- 387 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----------------------------------------
Confidence 999999999999999999999999999999999988874
Q ss_pred HHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 043758 679 LFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP 758 (918)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 758 (918)
.||..+||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 388 -------------------------------------------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 388 -------------------------------------------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred -------------------------------------------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4688899999999999999999999999999999999
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 759 NQVTFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLL 837 (918)
Q Consensus 759 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 837 (918)
|..||+.++.+|++.|++++|.++|+.|.+. |+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|+.++
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll 501 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALL 501 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHH
Confidence 9999999999999999999999999999875 99999999999999999999999999999887 5899999999999
Q ss_pred HHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 043758 838 ECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPCTS 901 (918)
Q Consensus 838 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 901 (918)
.+|+..|+++.|...++++.+.+ |.+...|..|+++|.+.|+|++|.++++.|++.|+.+.+.
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999998776 7778999999999999999999999999999999865433
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-58 Score=521.32 Aligned_cols=513 Identities=19% Similarity=0.280 Sum_probs=435.2
Q ss_pred CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC-CCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHH
Q 043758 95 PIKLACVSILRGLFAEEKFLEAFDYFIKICNAG-VDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKS 173 (918)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (918)
++...|+.++..|.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++.+.|.+++..|.+ .|+.||..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHH
Confidence 456689999999999999999999999998754 678999999999999999999999999999998 899999999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043758 174 LFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 174 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 253 (918)
++.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999975 59999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
.+.+.+++..+.+.|+.||..++++|+.+|+++|++++|.++|++|. ++|+.+||.|+.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 47899999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCch
Q 043758 334 MLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLAN 413 (918)
Q Consensus 334 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 413 (918)
|.+.|+.||..||
T Consensus 316 M~~~g~~pd~~t~------------------------------------------------------------------- 328 (697)
T PLN03081 316 MRDSGVSIDQFTF------------------------------------------------------------------- 328 (697)
T ss_pred HHHcCCCCCHHHH-------------------------------------------------------------------
Confidence 9999999988665
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
+.++.+|++.|++++|..++..|.+.|+.||..++++++.+|++.| ++++|..+|
T Consensus 329 ---~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G----------------------~~~~A~~vf 383 (697)
T PLN03081 329 ---SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG----------------------RMEDARNVF 383 (697)
T ss_pred ---HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC----------------------CHHHHHHHH
Confidence 6667788888899999999999999998888888888888876655 455555566
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCC
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE-NSVQ 572 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 572 (918)
++|. .||..+||+++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.
T Consensus 384 ~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 6553 3578888888888888888888888888888888888888888888888888888888888888875 5888
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 043758 573 PGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALV 652 (918)
Q Consensus 573 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 652 (918)
|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++.+. .
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~---------- 524 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--G---------- 524 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--C----------
Confidence 88888888888888888888888887765 56788888888888888888888888877776421 1
Q ss_pred HHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 043758 653 SGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIF 732 (918)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 732 (918)
+.+..+|..++
T Consensus 525 ---------------------------------------------------------------------p~~~~~y~~L~ 535 (697)
T PLN03081 525 ---------------------------------------------------------------------PEKLNNYVVLL 535 (697)
T ss_pred ---------------------------------------------------------------------CCCCcchHHHH
Confidence 22467889999
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHH-------HHH---HHh-cCCHHHHHHHHHHHHhCCCCCCHH
Q 043758 733 LLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCIL-------ING---HIA-AGEIDQAIGLFNQMNADGCVPDKT 796 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l-------i~~---~~~-~g~~~~A~~~~~~~~~~~~~p~~~ 796 (918)
+.|++.|++++|.+++++|.+.|+++... +|..+ +.+ +.. ..-++...++..+|.+.|..|+..
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999998764332 22111 000 000 011334456677777777777653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-45 Score=442.54 Aligned_cols=839 Identities=12% Similarity=0.019 Sum_probs=548.8
Q ss_pred hhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhh-----------
Q 043758 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQN----------- 70 (918)
Q Consensus 2 ~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~----------- 70 (918)
.++.+|++.+|...|++++...|....+ +..+..++...|++++|...|..
T Consensus 31 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 92 (899)
T TIGR02917 31 SYLQKNKYKAAIIQLKNALQKDPNDAEA------------------RFLLGKIYLALGDYAAAEKELRKALSLGYPKNQV 92 (899)
T ss_pred HHHHcCChHhHHHHHHHHHHhCCCCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhh
Confidence 3567788888888888888877774443 33333444444444444443333
Q ss_pred ------hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc
Q 043758 71 ------DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY 144 (918)
Q Consensus 71 ------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (918)
++...|++++|...+..............+..+...+...|++++|...|+++.+.. +.+...+..++..+..
T Consensus 93 ~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 171 (899)
T TIGR02917 93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALA 171 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHH
Confidence 335566666666666554322222344455566666666666666666666666554 3344556666666666
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMR 224 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (918)
.|++++|.++++.+.+ ..+++...+..+...+...|++++|...|++..+..+. +..++..++..+...|++++|..
T Consensus 172 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 172 ENRFDEARALIDEVLT--ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666654 22334455555556666666666666666666655432 55566666666666666666666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 043758 225 LFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNL 304 (918)
Q Consensus 225 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 304 (918)
.++++.+... .+...+......+...|++++|...++.+.+.+ +.+...+..+...+...|+++.|...|+.+....
T Consensus 249 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 325 (899)
T TIGR02917 249 HADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA- 325 (899)
T ss_pred HHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6666665421 122222233334445666666666666666543 2222333344455566666666666666665543
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHH
Q 043758 305 APSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSIS 384 (918)
Q Consensus 305 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (918)
+.+...+..+...+...|++++|...+..+.... +.+...+..+...+...|+++.|...+..+.+..... .......
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l 403 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN-AAARTQL 403 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHH
Confidence 3344455556666666666666666666665432 2233445555555566666666666666665543322 1222222
Q ss_pred hhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh
Q 043758 385 ATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFL 464 (918)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 464 (918)
+......+..+++...+..+....+... .....++..+.+.|++++|+.+++.+.... +++..++..+...+...|++
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELG-RADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCH
Confidence 2222233345556666666655544332 344455666667777777777777666542 34555666666667777777
Q ss_pred hhHHHHHHHhhcc------------cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 465 EGANAIVELMQDT------------EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRML 532 (918)
Q Consensus 465 ~~a~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 532 (918)
++|...++.+.+. ..+...|++++|...++++...++. +..++..+...+.+.|++++|...++++.
T Consensus 482 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 482 AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776665443 3345567777788888777776433 66777777778888888888888888877
Q ss_pred HCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 043758 533 KAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVL 612 (918)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 612 (918)
+.+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+.. +.+...
T Consensus 561 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 637 (899)
T TIGR02917 561 ELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALA 637 (899)
T ss_pred HhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 654 4455667777777888888888888888877653 4456677777778888888888888888877653 445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCccccc
Q 043758 613 YTALINHFLRAGEFEFASRLENLMVTNQIEF-DLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTR 691 (918)
Q Consensus 613 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (918)
+..+..++.+.|++++|...++++.+. .| +..++..+...+...+.. ......+.......+....
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~ 704 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRT-----------ESAKKIAKSLQKQHPKAAL 704 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHhhCcCChH
Confidence 777777788888888888888877753 33 345555565555544321 1222223333333444455
Q ss_pred chhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 043758 692 TKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHI 771 (918)
Q Consensus 692 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 771 (918)
........+...|++++|.+.++.+.+.. |+...+..++.++.+.|++++|...++++.+.. +.+...+..+...|.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55666777888899999999999887654 444777888999999999999999999998753 446668888888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHH
Q 043758 772 AAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFN 851 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 851 (918)
..|++++|.+.|+++.+.. +.++..++.+...+...|+ .+|+.+++++.+. .+.+..++..+..++.+.|++++|..
T Consensus 782 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998863 3477889999999999999 8899999999864 23355577778888999999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 852 MFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
.++++++.+ |.++.++..++.+|.+.|++++|.+++++|++
T Consensus 859 ~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 859 LLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999987 77999999999999999999999999999864
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-42 Score=419.77 Aligned_cols=815 Identities=13% Similarity=0.027 Sum_probs=657.9
Q ss_pred HHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC
Q 043758 49 SALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGV 128 (918)
Q Consensus 49 ~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 128 (918)
..+-+++...+...++...++.++.+.|++++|...|+.+.+.++. +...+..++.++...|++++|+..+........
T Consensus 43 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~ 121 (899)
T TIGR02917 43 IQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDD 121 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCc
Confidence 3344444555566666666666779999999999999999988764 455667788899999999999999987653333
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
+.....+..+...+...|++++|.+.|+.+.+ . .+.+...+..+...+...|++++|..+++++.+..+ ++...+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 198 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALA-I-DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLL 198 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHH
Confidence 45556788888889999999999999999986 2 234556778888889999999999999999988754 37788888
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC
Q 043758 209 LINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGE 288 (918)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 288 (918)
+...+...|++++|...|++..+.. +.+..++..++..+...|++++|...++.+.+.. +.+...+......+...|+
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKN 276 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcC
Confidence 9999999999999999999998764 3456678888888999999999999999998764 3344445555566778899
Q ss_pred HHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHH
Q 043758 289 VDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCE 368 (918)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (918)
+++|...|+.+.+.+ +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.+...+..
T Consensus 277 ~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 277 YEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred HHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988765 2334455566778889999999999999988753 23344556666777889999999999998
Q ss_pred HHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCc
Q 043758 369 FAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLV 448 (918)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 448 (918)
+........ ......+......+..+++...++.+...++. +...+..+...+...|++++|+..|+.+.+.. +...
T Consensus 355 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 431 (899)
T TIGR02917 355 ALGLDPDDP-AALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELG 431 (899)
T ss_pred HHhcCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-Ccch
Confidence 877654433 33333333334455678899999988877654 45677888889999999999999999988764 2234
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhcc------------cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043758 449 FTCNTLIKCFYQVGFLEGANAIVELMQDT------------EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLC 516 (918)
Q Consensus 449 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 516 (918)
.....++..+.+.|++++|..+++.+... ..+...|++++|...|+++.+..+. +...+..++..+.
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 510 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDI 510 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHH
Confidence 45566778889999999999999888654 5566889999999999999887543 6777888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHH
Q 043758 517 KEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCM 596 (918)
Q Consensus 517 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 596 (918)
..|++++|.+.|+++.+.. +.+..++..+...+...|+.++|...++++.+.+ +.+...+..++..+...|++++|..
T Consensus 511 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998864 5577888899999999999999999999998764 4556778888999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhh
Q 043758 597 YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGK 676 (918)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 676 (918)
+++.+.+.. +.+..+|..+..++.+.|++++|+..|+.+.+.. ..+...+..+...+...+.. ....
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-----------~~A~ 655 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY-----------AKAI 655 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH-----------HHHH
Confidence 999998753 5678899999999999999999999999998643 22344566666666554321 2233
Q ss_pred HHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 043758 677 EMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGL 756 (918)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 756 (918)
..+.+.+...+............+...|+++.|.++++.+.+.. +++...+..+...+...|++++|...|+++...
T Consensus 656 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 732 (899)
T TIGR02917 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-- 732 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 44455566677777788888999999999999999999998665 567788899999999999999999999999985
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 757 RPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHL 836 (918)
Q Consensus 757 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (918)
.|+..++..++.++.+.|++++|.+.++++.+. .+.+...+..+...|...|++++|...++++.+. .+++...+..+
T Consensus 733 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l 810 (899)
T TIGR02917 733 APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNL 810 (899)
T ss_pred CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 466577788899999999999999999999886 3347788999999999999999999999999875 35577789999
Q ss_pred HHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 837 LECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 837 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
...+.+.|+ .+|+..++++.... |.++..+..++.+|...|++++|..+++++.+.+..
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999 88999999999876 778888999999999999999999999999998854
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.1e-26 Score=277.81 Aligned_cols=657 Identities=11% Similarity=-0.000 Sum_probs=382.5
Q ss_pred HHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhh----------------HHHHHHHhhchhc
Q 043758 49 SALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLA----------------CVSILRGLFAEEK 112 (918)
Q Consensus 49 ~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~ 112 (918)
..+-+.+...++..+++.....+..+.|+.++|.+.++++.+..+. ++.+ ...+++.+...|+
T Consensus 49 ~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 49 QSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 3333444444444444444444446667777777777777666533 2222 2344556778888
Q ss_pred HHHHHHHHHHHhhcCCCCcch-hHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHH
Q 043758 113 FLEAFDYFIKICNAGVDLNCW-SYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFA 191 (918)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 191 (918)
+++|+..|+.+.... +++.. ............|+.++|++.|+++.+. .+.+...+..+...+...|++++|...+
T Consensus 128 ~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 128 TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 888888888887664 33322 1111222233458888888888888862 2444556677778888888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043758 192 REMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY-TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQ 270 (918)
Q Consensus 192 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (918)
+++.+... . +...+...++.+...+..+... .+...+..+-.....+.+...+..+......
T Consensus 205 ~~~~~~~~--~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 205 EQMAKSPA--G---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHhhCCC--c---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 88866421 1 0111222222222221111111 2222222222222344556666655443223
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHH
Q 043758 271 PNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDH-LLSFIL 349 (918)
Q Consensus 271 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l 349 (918)
|+.. .......+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+....... ..+..+
T Consensus 268 p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 268 PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 3322 2234566778999999999999988875 457788899999999999999999999998865322111 111111
Q ss_pred HhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCCh
Q 043758 350 LKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKY 429 (918)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (918)
+... .-.........+.+.|++
T Consensus 346 l~~~----------------------------------------------------------~~~~~~~~g~~~~~~g~~ 367 (1157)
T PRK11447 346 LKVN----------------------------------------------------------RYWLLIQQGDAALKANNL 367 (1157)
T ss_pred HHhh----------------------------------------------------------hHHHHHHHHHHHHHCCCH
Confidence 0000 001112234566788899
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 043758 430 EKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYD 509 (918)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 509 (918)
++|+..|+++.+.. +.+...+..+..++.. .|++++|...|+++.+..+. +...+.
T Consensus 368 ~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~----------------------~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 368 AQAERLYQQARQVD-NTDSYAVLGLGDVAMA----------------------RKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------------------CCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 99999999888763 2333444445555444 45666777777777765433 555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--------CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHH
Q 043758 510 AIIGHLCKEKRILEAEDMFKRMLKAGI--------DPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTAL 581 (918)
Q Consensus 510 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 581 (918)
.+...+. .++.++|..+++.+..... ......+..+...+...|++++|++.|++.++.. +-+...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 6666664 4577888888776543210 0012234556677888999999999999998864 2245566778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhccc
Q 043758 582 ISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITG 661 (918)
Q Consensus 582 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 661 (918)
...|...|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++......-+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~-------- 572 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ-------- 572 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh--------
Confidence 888999999999999999988753 33555555566667788999999998887653322222111100000
Q ss_pred ccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 043758 662 RKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRM 741 (918)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 741 (918)
..........+...|+.++|.++++. .++++..+..+...+.+.|++
T Consensus 573 ----------------------------~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 573 ----------------------------SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred ----------------------------hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCH
Confidence 00012233445555666666666651 233445555566666666666
Q ss_pred hHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043758 742 DDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYS 820 (918)
Q Consensus 742 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 820 (918)
++|+..|++..+.. +.+...+..++..+...|++++|++.++.+.+. .| +...+..+..++...|++++|.+++++
T Consensus 620 ~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 620 AAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666666666531 223445556666666666666666666655543 22 334455555666666666666666666
Q ss_pred HHhCCC--CC---CHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 043758 821 MHKRGF--VP---KKATYEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 821 ~~~~~~--~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
+.+..- .| +...+..+...+...|++++|...+++.+
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 654211 11 11234444555566666666666666654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.9e-25 Score=267.05 Aligned_cols=469 Identities=15% Similarity=0.040 Sum_probs=287.7
Q ss_pred hhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHh----------------h
Q 043758 4 INRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALL----------------L 67 (918)
Q Consensus 4 ~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~----------------~ 67 (918)
..+++.+.|++.+++++...|+...++.....+.....+++ .+-..+-+.....++..++.. .
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~-~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSD-GAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 35678888888888888888777776655444333322222 233334444444555444422 2
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF 147 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 147 (918)
..+++.+.|++++|...|+.+...++.........+.......|+.++|+..|+++.... +.+...+..+...+...|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC
Confidence 234568889999999999998876543221121111222234588999999999998875 5567778888888999999
Q ss_pred hhHHHHHHHHHHhcC---------------CCCCCc---ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 043758 148 LDEVLEVVNIMRKKK---------------GLVPAL---HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSL 209 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~---------------~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (918)
.++|++.++++.+.. ...++. ..+...+..+-.....+.|...+.+.......|+.. ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~ 275 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQ 275 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHH
Confidence 999999998875411 112222 233334444444445667777777766543333322 2344
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHh------------hH
Q 043758 210 INGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQP-NMV------------TD 276 (918)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~------------~~ 276 (918)
...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++..+..... ... ..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 567778999999999999998763 2356788888889999999999999999988764211 111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHhhCCC
Q 043758 277 LIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDH-LLSFILLKNCPE 355 (918)
Q Consensus 277 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~ 355 (918)
......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. |+. ..+..+...+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-
Confidence 233567888999999999999998875 4566777888899999999999999999998743 332 23333333332
Q ss_pred CccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHH
Q 043758 356 GTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVC 435 (918)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (918)
.++.++|...+..+..... ......... .....+..+...+...|++++|+..
T Consensus 431 ~~~~~~A~~~l~~l~~~~~--------------------~~~~~~~~~-------l~~~~~~~~a~~~~~~g~~~eA~~~ 483 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQR--------------------RSIDDIERS-------LQNDRLAQQAEALENQGKWAQAAEL 483 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHH--------------------HHHHHHHHH-------hhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 3355666555543222100 000000000 0012345566667777777777777
Q ss_pred HHHHHHCCCCCC-cccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043758 436 LFQLVNFGYRPL-VFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGH 514 (918)
Q Consensus 436 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (918)
|++..+.. |+ ...+..+...+... |++++|...++++.+..+. +...+..+...
T Consensus 484 ~~~Al~~~--P~~~~~~~~LA~~~~~~----------------------G~~~~A~~~l~~al~~~P~-~~~~~~a~al~ 538 (1157)
T PRK11447 484 QRQRLALD--PGSVWLTYRLAQDLRQA----------------------GQRSQADALMRRLAQQKPN-DPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHc----------------------CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 77777642 33 33333444444333 4555555566665554322 44444444445
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 043758 515 LCKEKRILEAEDMFKRML 532 (918)
Q Consensus 515 ~~~~~~~~~a~~~~~~~~ 532 (918)
+...++.++|...++.+.
T Consensus 539 l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred HHhCCCHHHHHHHHHhCC
Confidence 556677777777666554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2e-23 Score=236.55 Aligned_cols=266 Identities=9% Similarity=-0.022 Sum_probs=175.2
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 043758 574 GSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVS 653 (918)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 653 (918)
+...|..+..++.. ++.++|...+...... .|+......+...+...|++++|...|+++... .|+...+..+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l-- 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA-- 548 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH--
Confidence 34455555555554 6666677766666554 344333333344445677777777777766432 1221111111
Q ss_pred HHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 043758 654 GVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFL 733 (918)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 733 (918)
...+...|+.+.|...++...+.. +++...+..+..
T Consensus 549 -------------------------------------------a~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 549 -------------------------------------------ANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred -------------------------------------------HHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 122334477777777777666543 223333333444
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChh
Q 043758 734 LLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLS 812 (918)
Q Consensus 734 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 812 (918)
.+...|++++|...+++..+ +.|+...+..+..++.+.|++++|+..+++.... .| +...++.+..++...|+++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHH
Confidence 44556888888888888877 4566667777788888888888888888888774 34 4567777777888888888
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 813 HVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVM 891 (918)
Q Consensus 813 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 891 (918)
+|+..+++..+ ..| +...+..+..++...|++++|+..+++.+... |.+..+....+++..+..+++.|.+-+.+.
T Consensus 661 eAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 661 QSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888876 344 55577777778888888888888888888776 666777888888888888888888877776
Q ss_pred HhCCCC
Q 043758 892 HKRGRL 897 (918)
Q Consensus 892 ~~~~~~ 897 (918)
-..++.
T Consensus 738 ~~~~~~ 743 (987)
T PRK09782 738 WTFSFD 743 (987)
T ss_pred hhcCcc
Confidence 555443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=6.1e-23 Score=232.67 Aligned_cols=684 Identities=11% Similarity=-0.026 Sum_probs=398.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|++++|...|+.+++.+|. ++.++..+.+.|...|++++|+..+++..+.. |+...|..++..+ ++.++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 5569999999999999999876 58889999999999999999999999999875 3444444444333 9999999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHH--------HhccCchHHHHHHHHHHHhCCCCCChhhHHHH-HHHHhcCCChHHHH
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYA--------LCKNIRTVEAESFAREMESQGFYVDKLMYTSL-INGYCSNRNMKMAM 223 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~ 223 (918)
++++++.+. .+.+..++..+... |.+. ++|.+.++ .....+.|++.+.... ...|.+.|++++|+
T Consensus 129 ~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 129 TTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 999999973 23334555444444 5544 66666666 4443344455555555 89999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 224 RLFFRMLKTGCEPDSYTCNTLIHGFFK-MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 224 ~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
.++.++.+.+. .+......+..+|.. .++ +.+..+++. .++.++..+..+...|.+.|+.++|.++++++...
T Consensus 203 ~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 99999999852 344456666667776 466 777777553 33467888999999999999999999999998765
Q ss_pred CCC-CCcchHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCChh-hHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChh
Q 043758 303 NLA-PSVHCYTVLIDALYKHNRLM-EVDELYKKMLANRVAPDHL-LSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPL 379 (918)
Q Consensus 303 ~~~-~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (918)
... |...+|..+ +.+.+... .|..-|.+ ...++.. .....+..+.+.++++.+.++.. +.+...
T Consensus 277 ~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 343 (987)
T PRK09782 277 FTTDAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANE 343 (987)
T ss_pred ccCCCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcch
Confidence 322 444555433 33434332 11111111 0111111 11122455566677765554421 222222
Q ss_pred hhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHC-C-CCCCcccHHHHHHH
Q 043758 380 ARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNF-G-YRPLVFTCNTLIKC 457 (918)
Q Consensus 380 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~ 457 (918)
............+...++......+....+.. ......+.-...+.|+.++|..+|++.... + ..++......++..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQEPAN-LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 22222222223344455566666666654422 244555556677899999999999998763 1 12233344467777
Q ss_pred HHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-
Q 043758 458 FYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKA-G- 535 (918)
Q Consensus 458 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~- 535 (918)
+...+......++... . .+++...- +.-.|+..++...++..... +
T Consensus 423 ~~~~~~~~~~~~~~~l-------------------~-------~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 423 LESHPYLATPAKVAIL-------------------S-------KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred HHhCCcccchHHHHHh-------------------c-------cccccchh------HHHHhhhhhhhhhHHHHHHhccc
Confidence 7776653322222111 1 00010000 00111222222222211110 0
Q ss_pred CCC--cHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 043758 536 IDP--DEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLY 613 (918)
Q Consensus 536 ~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 613 (918)
.++ +...|..+..++.. +++++|+..+.+.... .|+......+..++...|++++|...|+.+... +|+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 022 33344444444333 4444455544444433 233222222223333455555555555544332 2222333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccch
Q 043758 614 TALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTK 693 (918)
Q Consensus 614 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (918)
..+..++.+.|++++|...++...+.. |+.......
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~------------------------------------------ 581 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWW------------------------------------------ 581 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHH------------------------------------------
Confidence 334444445555555555555544321 211110000
Q ss_pred hhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHh
Q 043758 694 STAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN-QVTFCILINGHIA 772 (918)
Q Consensus 694 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 772 (918)
+.......|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++..+. .|+ ...++.+..++..
T Consensus 582 --La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 582 --LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWD 655 (987)
T ss_pred --HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 001111225555555555544433 345677778888888888888888888888874 454 4466777778888
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChhhHH
Q 043758 773 AGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK-ATYEHLLECFCANCLSIPAF 850 (918)
Q Consensus 773 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~ 850 (918)
.|+.++|++.+++..+. .| +...+..+..++...|++++|+..+++..+ ..|+. .+.........+..+++.|.
T Consensus 656 ~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 656 SGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 88888888888888874 33 567788888888888888888888888875 45654 34445555566777788888
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 043758 851 NMFKEMIVHDHVPCLSNCNWLLNILCQEKHF 881 (918)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 881 (918)
+.+++.... .|+..+....+.++...+++
T Consensus 732 ~~~~r~~~~--~~~~~a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 732 EEVGRRWTF--SFDSSIGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHhhc--CccchhccccchHhhhcccc
Confidence 888877665 34444666666666655543
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.4e-18 Score=183.10 Aligned_cols=728 Identities=14% Similarity=0.082 Sum_probs=451.5
Q ss_pred HHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCC----CCCC--h-hhHHHHHHHhhchh----------
Q 043758 49 SALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKN----IVPI--K-LACVSILRGLFAEE---------- 111 (918)
Q Consensus 49 ~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~--~-~~~~~l~~~~~~~g---------- 111 (918)
+.++.+|...+...+++..+..-+.+.|+.++.+.+++...... ..+. . .+++.+...+...+
T Consensus 28 ~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~ 107 (1018)
T KOG2002|consen 28 TEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKD 107 (1018)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 45667777777777777777777788888888888888776211 1111 1 12223333332222
Q ss_pred -cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC--hhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHH
Q 043758 112 -KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF--LDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAE 188 (918)
Q Consensus 112 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 188 (918)
.+..|..+|..+.......+.. +..-...|...|+ ++.|.+.|....+ .-+++...+..-.......+++-.|.
T Consensus 108 e~~~~at~~~~~A~ki~m~~~~~-l~~~~~~~l~~~~~~~~~A~a~F~~Vl~--~sp~Nil~LlGkA~i~ynkkdY~~al 184 (1018)
T KOG2002|consen 108 ELFDKATLLFDLADKIDMYEDSH-LLVQRGFLLLEGDKSMDDADAQFHFVLK--QSPDNILALLGKARIAYNKKDYRGAL 184 (1018)
T ss_pred HHHHHHHHHhhHHHHhhccCcch-hhhhhhhhhhcCCccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHhccccHHHHH
Confidence 3455666666655444322222 2222222333443 5888888888886 23455555544445555678999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHH---hcCChhHHHHHHHHH
Q 043758 189 SFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS-YTCNTLIHGFF---KMGLFDKGWVLYSQM 264 (918)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~---~~g~~~~a~~~~~~~ 264 (918)
.+|.......+.-.+...-.+...+.+.|+.+.|+..|.+..+. .|+. .++..|...-. ....+..+..++...
T Consensus 185 ~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a 262 (1018)
T KOG2002|consen 185 KYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRA 262 (1018)
T ss_pred HHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 99999666533322222333345566889999999999999886 3432 23333322212 223455666777766
Q ss_pred HhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 043758 265 SDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLA--PSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPD 342 (918)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 342 (918)
...+ +.++...+.|...|.-.|++..++.+...+...... .-..+|..+.++|-..|++++|...|-+..+. .+|
T Consensus 263 y~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d 339 (1018)
T KOG2002|consen 263 YKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DND 339 (1018)
T ss_pred Hhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCC
Confidence 6554 567888888999999999999999998887764311 12345778889999999999999998776653 444
Q ss_pred hhh--HHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHH
Q 043758 343 HLL--SFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYI 420 (918)
Q Consensus 343 ~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 420 (918)
..+ +..+...+...|+++.+...++.+.+...... .+...+.
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~------------------------------------etm~iLG 383 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY------------------------------------ETMKILG 383 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH------------------------------------HHHHHHH
Confidence 433 33345556666666666655555555432221 3334444
Q ss_pred HHHHccC----ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHH
Q 043758 421 SALCKGG----KYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQM 496 (918)
Q Consensus 421 ~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 496 (918)
..|...+ ..+.|..++....+.- +.|...|..+...+-.. +...+... +..|..+ +
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~---------------~~~A~d~---L 443 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDA---------------YGNALDI---L 443 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHH---------------HHHHHHH---H
Confidence 4444443 4566666666665442 34445555554444332 21111221 1222222 3
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCcH------HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 043758 497 EVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKA---GIDPDE------VFFTTMINGYLQNRKPIEACQLFEKMK 567 (918)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 567 (918)
...+..+.+...|.+...+...|+++.|...|...... ...++. .+-..+....-..++++.|.+.|..+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34455578889999999999999999999999988764 112222 222334445556789999999999999
Q ss_pred hCCCCCCch-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CccH
Q 043758 568 ENSVQPGSY-PYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI-EFDL 645 (918)
Q Consensus 568 ~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~ 645 (918)
+. .|+-. .|..+.-.....+...+|...++.....+ ..++..+..+...+.+...+..|.+-|....+... .+|.
T Consensus 524 ke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 524 KE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred HH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 87 35432 23333322223577889999999988764 55777888888899999999999998887766543 3566
Q ss_pred HHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCCh
Q 043758 646 IAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNL 725 (918)
Q Consensus 646 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 725 (918)
++..+|-+.|......... ..--..+..++|.++++++.... +-|.
T Consensus 601 YsliaLGN~~~~~l~~~~r---------------------------------n~ek~kk~~~KAlq~y~kvL~~d-pkN~ 646 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSR---------------------------------NPEKEKKHQEKALQLYGKVLRND-PKNM 646 (1018)
T ss_pred hHHHHhhHHHHHHhccccc---------------------------------ChHHHHHHHHHHHHHHHHHHhcC-cchh
Confidence 6666666533332111000 00122366778888888777333 5577
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDKTVYNTLLKG 804 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~ 804 (918)
.+-|-+.-+++..|++.+|..+|.+..+... .+..+|-.+..+|...|++..|+++|+...+. .-+-+..+...|..+
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 7888888888888999999999988887643 23346777888888889999999988887776 545577888888888
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVPKKAT--YEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFH 882 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 882 (918)
+.+.|.+.+|.+.+..... ..|...+ ++..+.. .++-+..++. ++ .++=.+....+..+
T Consensus 726 ~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~----------kkla~s~lr~--~k-----~t~eev~~a~~~le 786 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVL----------KKLAESILRL--EK-----RTLEEVLEAVKELE 786 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHH----------HHHHHHHHhc--cc-----ccHHHHHHHHHHHH
Confidence 8888888888888777664 3443332 2222211 1111222221 11 12334445556678
Q ss_pred HHHHHHHHHHhCCCC
Q 043758 883 EAQIVLDVMHKRGRL 897 (918)
Q Consensus 883 ~A~~~~~~~~~~~~~ 897 (918)
.|.+++..|...+-.
T Consensus 787 ~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 787 EARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHhcCCC
Confidence 888888888877644
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-18 Score=182.40 Aligned_cols=442 Identities=12% Similarity=0.087 Sum_probs=260.6
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC----CCcc---hhHHHHHHHHHcCC-----------ChhHHHHHHHHH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGV----DLNC---WSYNVLIDGLCYKG-----------FLDEVLEVVNIM 158 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~g-----------~~~~A~~~~~~~ 158 (918)
..+|..+...|..+|+.++.+.+++.-..... .++. ..++.+..-++..+ ....|.-.|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 34899999999999999999999987651110 1111 12333333332211 223344455554
Q ss_pred HhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc--CCCC
Q 043758 159 RKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT--GCEP 236 (918)
Q Consensus 159 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p 236 (918)
-+..-..+...+............+++.|.+.|....+..+. +....-.-.......|++..|+.+|+..... ..+|
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a 199 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKA 199 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC
Confidence 431112222222222222222222358888899888887443 4444444444555678999999999997654 2344
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCcchHHH
Q 043758 237 DSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREG---EVDAALMLLNSKVSSNLAPSVHCYTV 313 (918)
Q Consensus 237 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 313 (918)
|+. ..+..++.+.|+.+.|...|....+.+ +-++.++..|...-.... .+..+..++...-..+ +-|+.+.+.
T Consensus 200 D~r--Igig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~ 275 (1018)
T KOG2002|consen 200 DVR--IGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNH 275 (1018)
T ss_pred Ccc--chhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHH
Confidence 443 233355678899999999999988764 223334444433333333 3566777777766655 467788888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCCh
Q 043758 314 LIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDL 393 (918)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (918)
|...|.-.|+++.+..+...+......-..
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~-------------------------------------------------- 305 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSI-------------------------------------------------- 305 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHH--------------------------------------------------
Confidence 999999999999999988887653210000
Q ss_pred HHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHH--HHHHHHhcCChhhHHHHH
Q 043758 394 CQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNT--LIKCFYQVGFLEGANAIV 471 (918)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~ 471 (918)
-..+|-.+..+|...|++++|...|.+.... .++.+++.. +...+
T Consensus 306 ------------------~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~------------- 352 (1018)
T KOG2002|consen 306 ------------------KAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMY------------- 352 (1018)
T ss_pred ------------------HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHH-------------
Confidence 0134556677778888888888887776654 344433322 23333
Q ss_pred HHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 043758 472 ELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEK----RILEAEDMFKRMLKAGIDPDEVFFTTMI 547 (918)
Q Consensus 472 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (918)
.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+.
T Consensus 353 ---------i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~la 421 (1018)
T KOG2002|consen 353 ---------IKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELA 421 (1018)
T ss_pred ---------HHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 34456666666777776653 335666666666666654 4566666666666542 34555665555
Q ss_pred HHHHcCCChHHHHHHHHHHH----hCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCH------HHHH
Q 043758 548 NGYLQNRKPIEACQLFEKMK----ENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD---GFVPNV------VLYT 614 (918)
Q Consensus 548 ~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~ 614 (918)
..+-.. ++..++..|..+. ..+-.+.....|.+.......|+++.|...|...... ...++. .+--
T Consensus 422 ql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 555443 3333365555543 3343456667777777777788888887777776554 111222 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 615 ALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 615 ~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
.+..++...++.+.|.+.|..+++
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHH
Confidence 355556666777888888877775
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=6e-20 Score=182.77 Aligned_cols=354 Identities=15% Similarity=0.115 Sum_probs=246.3
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
.+|..+..++...|+.+.|...|.+.+.. .|+.....+-+..+.+ ..|++++|...+
T Consensus 151 da~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlk---------------------a~Grl~ea~~cY 207 (966)
T KOG4626|consen 151 DAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLK---------------------AEGRLEEAKACY 207 (966)
T ss_pred HHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHH---------------------hhcccchhHHHH
Confidence 44555566666666666666666666543 3443333332222211 235566666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQP 573 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 573 (918)
.+.++..+. -..+|+.|...+...|+...|+..|++..+.. +.-...|-.+...|...+.+++|+..|.+.... .|
T Consensus 208 lkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 208 LKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 666654322 44567777777788888888888888887753 223566777888888888888888888777765 34
Q ss_pred C-chhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 043758 574 G-SYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALV 652 (918)
Q Consensus 574 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 652 (918)
+ ...+..+.-.|..+|.++.|+..|++.++.. +--+..|+.|..++-..|+..+|...|.+.+...
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~------------ 350 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC------------ 350 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC------------
Confidence 4 3556666666777888888888888887752 2235678888888888888888888877775310
Q ss_pred HHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 043758 653 SGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIF 732 (918)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 732 (918)
+......+.|.
T Consensus 351 ---------------------------------------------------------------------p~hadam~NLg 361 (966)
T KOG4626|consen 351 ---------------------------------------------------------------------PNHADAMNNLG 361 (966)
T ss_pred ---------------------------------------------------------------------CccHHHHHHHH
Confidence 22345667778
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCC
Q 043758 733 LLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDK-TVYNTLLKGLCQAGR 810 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 810 (918)
..|...|.+++|..+|....+ +.|... .++.|...|-.+|++++|+..|++.++ ++|+. ..|+.+...|...|+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 888888888888888888777 556543 677788888888888888888888877 67764 778888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 043758 811 LSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHE 883 (918)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (918)
.+.|+..+.+... +.|... ..+.|...|--.|+..+|+..+++.++.. |.-+.++..++.++.-.-+|.+
T Consensus 438 v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHhcccc
Confidence 8888888888874 567554 66778888888888888888888888765 4446677777766554444433
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.5e-19 Score=179.98 Aligned_cols=460 Identities=15% Similarity=0.110 Sum_probs=305.4
Q ss_pred HHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC
Q 043758 49 SALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGV 128 (918)
Q Consensus 49 ~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 128 (918)
+.+++-+.+....+.+..-+..-+.+.|++.+|.+.-...-..++. +....-.+-..+.+..+.+.....-....+..
T Consensus 35 ~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~- 112 (966)
T KOG4626|consen 35 SSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN- 112 (966)
T ss_pred hHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-
Confidence 3444444444444444444444446778888888777766655532 22222233344555555655544433344333
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCC-CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhh-H
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVP-ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLM-Y 206 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~ 206 (918)
+.-..+|..+...+...|++.+|+..++.+++ ..| ....|..+..++...|+.+.|.+.|.+..+.+ |+... .
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~ 187 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCAR 187 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhh
Confidence 33456777888888888888888888888876 334 46677778888888888888888887777752 23332 2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 207 TSLINGYCSNRNMKMAMRLFFRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
+-+....-..|+.++|...|.+..+. .|. ...|+.|.-.+-..|+...|++.|++.++.. +.-...|..|...|..
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKE 264 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHH
Confidence 23334444577788888888777765 343 3467777777777888888888888877653 2235567777778888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHH
Q 043758 286 EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALML 365 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 365 (918)
.+.++.|...+.+..... +....++..+...|..+|..+-|++.|++.++. .|+-
T Consensus 265 ~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F---------------------- 319 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNF---------------------- 319 (966)
T ss_pred HhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCc----------------------
Confidence 888888888887776654 345566777777777888888888888777653 2221
Q ss_pred HHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 043758 366 LCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYR 445 (918)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (918)
+.+|+.+..++...|+..+|...|.+.+... +
T Consensus 320 -----------------------------------------------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p 351 (966)
T KOG4626|consen 320 -----------------------------------------------PDAYNNLANALKDKGSVTEAVDCYNKALRLC-P 351 (966)
T ss_pred -----------------------------------------------hHHHhHHHHHHHhccchHHHHHHHHHHHHhC-C
Confidence 2667888888888888888888888877653 2
Q ss_pred CCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043758 446 PLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAE 525 (918)
Q Consensus 446 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 525 (918)
.-..+.+.+...+...| .+++|..++....+..+. -....+.|...|-..|++++|+
T Consensus 352 ~hadam~NLgni~~E~~----------------------~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQG----------------------KIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred ccHHHHHHHHHHHHHhc----------------------cchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHH
Confidence 22345566666665444 445555555555554222 3456778888888889999999
Q ss_pred HHHHHHHHCCCCCc-HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-chhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 526 DMFKRMLKAGIDPD-EVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPG-SYPYTALISGLVKKGMVDLGCMYLDRMLA 603 (918)
Q Consensus 526 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 603 (918)
.-|++..+. .|+ ...|+.+...|-..|+...|++.+.+.+..+ |. ...++.|...|-..|++.+|+.-|+...+
T Consensus 409 ~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 409 MCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999888875 454 5678888888888899999999888888763 33 35677788888889999999998888887
Q ss_pred CCCCCC-HHHHHHHHHHH
Q 043758 604 DGFVPN-VVLYTALINHF 620 (918)
Q Consensus 604 ~~~~~~-~~~~~~l~~~~ 620 (918)
. .|| +..|-.++.++
T Consensus 485 l--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 485 L--KPDFPDAYCNLLHCL 500 (966)
T ss_pred c--CCCCchhhhHHHHHH
Confidence 6 333 33444455544
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=1.9e-16 Score=166.10 Aligned_cols=297 Identities=13% Similarity=0.031 Sum_probs=214.5
Q ss_pred hhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHH
Q 043758 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDAL 82 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~ 82 (918)
++.+|++++|.+++..++++.|. .+.+|.+|..++ -.+|+.+++.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~------------------~~~ay~tL~~Iy-----------------EqrGd~eK~l 193 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPR------------------NPIAYYTLGEIY-----------------EQRGDIEKAL 193 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcc------------------chhhHHHHHHHH-----------------HHcccHHHHH
Confidence 34556677777777777666665 444555566655 5556666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC
Q 043758 83 RHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK 162 (918)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (918)
..+--+...++. |...|..+.....+.|++++|.-.|.+++... |++...+..-+..|.+.|+...|.+.|.++.. .
T Consensus 194 ~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~ 270 (895)
T KOG2076|consen 194 NFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-L 270 (895)
T ss_pred HHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-h
Confidence 666666666655 66789999888899999999999999999887 67777788888899999999999999999987 2
Q ss_pred CCCCCcccHHHH----HHHHhccCchHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--
Q 043758 163 GLVPALHPYKSL----FYALCKNIRTVEAESFAREMESQG-FYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE-- 235 (918)
Q Consensus 163 ~~~~~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-- 235 (918)
..+.+..-...+ +..+...++-+.|.+.++...+.+ -..+...++.++..|.+...++.|......+......
T Consensus 271 ~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 271 DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCC
Confidence 212222222223 344556666788888888877732 1235667889999999999999999888877651111
Q ss_pred --------------------CChhhHH----HHHHHHHhcCChhHHHHHHHHHHhCCC--CccHhhHHHHHHHHHhcCCH
Q 043758 236 --------------------PDSYTCN----TLIHGFFKMGLFDKGWVLYSQMSDWGF--QPNMVTDLIMISNYCREGEV 289 (918)
Q Consensus 236 --------------------p~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 289 (918)
|+...|. .+.-++.+....+....+...+....+ ..++..|.-+..+|...|++
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 1111111 233345566666666666666666653 34466788899999999999
Q ss_pred HHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 290 DAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 290 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
..|..+|..+.......+...|-.+..+|...|.+++|.+.|...+..
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999988765567789999999999999999999999998763
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.2e-18 Score=186.40 Aligned_cols=236 Identities=14% Similarity=0.087 Sum_probs=102.4
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC----cccHHHHH
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA----LHPYKSLF 175 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ll 175 (918)
+..++..|...|++++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+ .+..+. ...+..+.
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-LGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHH
Confidence 3444444444555555555555444332 23334444444455555555555555554443 111110 01122333
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD 255 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 255 (918)
..+.+.|++++|...|+++.+..+. +...+..+...|.+.|++++|.+.|+++.+.+......+++.+..++...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 3444445555555555554443211 233444444444455555555555555443311111223444444444555555
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh---cCChhHHHHHHH
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK---HNRLMEVDELYK 332 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~ 332 (918)
+|...++.+.+. .|+...+..++..+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+..++..+++
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 555555544443 233333344444444555555555555444433 2444444444444332 234444555555
Q ss_pred HHHhCCCCCC
Q 043758 333 KMLANRVAPD 342 (918)
Q Consensus 333 ~~~~~~~~~~ 342 (918)
+|.+.++.|+
T Consensus 343 ~~~~~~~~~~ 352 (389)
T PRK11788 343 DLVGEQLKRK 352 (389)
T ss_pred HHHHHHHhCC
Confidence 4444444333
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=9.9e-18 Score=179.33 Aligned_cols=306 Identities=13% Similarity=0.085 Sum_probs=185.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC---chhHHHHHHHHHhc
Q 043758 512 IGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPG---SYPYTALISGLVKK 588 (918)
Q Consensus 512 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 588 (918)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345677899999999999999874 44566888889999999999999999999987532221 24567788889999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccc
Q 043758 589 GMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDV 668 (918)
Q Consensus 589 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 668 (918)
|+++.|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 99999999999998753 45678899999999999999999999999876432221100
Q ss_pred cccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 043758 669 NRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHF 748 (918)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 748 (918)
....+..+...+.+.|++++|...|
T Consensus 179 -------------------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 179 -------------------------------------------------------IAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 0112233444444555555555555
Q ss_pred HHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 043758 749 QMMKREGLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFV 827 (918)
Q Consensus 749 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 827 (918)
+++.+. .|+ ...+..+...+.+.|++++|.+.|+++.+.+......+++.++.+|...|++++|...++++.+. .
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 555442 122 22444444555555555555555555554311111234445555555555555555555555432 3
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCcc
Q 043758 828 PKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ---EKHFHEAQIVLDVMHKRGRLPCTS 901 (918)
Q Consensus 828 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 901 (918)
|+...+..+...+.+.|++++|...++++.+. .|+...+..+...+.. .|+..+|..++++|.++++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 44444444455555555555555555555443 2333344433433332 335555555555555555544444
No 20
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=1.4e-13 Score=139.04 Aligned_cols=615 Identities=11% Similarity=0.031 Sum_probs=409.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHH
Q 043758 74 ALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLE 153 (918)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (918)
..+++..|.-++....+.+|. ++..|.+-.+.--..|++..|..+..+=.+.- +.+...|-. ++ +....+.|..
T Consensus 263 dl~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLe---ai-RLhp~d~aK~ 336 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLE---AI-RLHPPDVAKT 336 (913)
T ss_pred cHHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHH---HH-hcCChHHHHH
Confidence 344567788888888887765 66677777776677777777776665433331 233333332 22 3445555666
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 043758 154 VVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (918)
+.-...+ ..+.++..|..-. --..+...=.+++....+. ++.++..|-..+ ...+.+.|.-++.+..+.
T Consensus 337 vvA~Avr--~~P~Sv~lW~kA~---dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec- 405 (913)
T KOG0495|consen 337 VVANAVR--FLPTSVRLWLKAA---DLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC- 405 (913)
T ss_pred HHHHHHH--hCCCChhhhhhHH---hhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-
Confidence 6666554 1222223322111 1112333345566666665 222555555443 344556677777777764
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCCCCcc
Q 043758 234 CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV----SSNLAPSVH 309 (918)
Q Consensus 234 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 309 (918)
-|... -|..++++..-++.|..++....+. ++-+...|.+-...--..|+.+...+++.+-. ..|+..+..
T Consensus 406 -cp~s~---dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 406 -CPQSM---DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred -ccchH---HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 23321 1233455566677777777777654 45566666666666666677776666665432 233334444
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCC
Q 043758 310 CYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNP 389 (918)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (918)
.|-.=...+-..|-.-.+..+....+.-|+. ...
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvE-----------------------------------eed----------- 514 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVE-----------------------------------EED----------- 514 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccc-----------------------------------cch-----------
Confidence 4433333333333333333333333222221 110
Q ss_pred CCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHH
Q 043758 390 TGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANA 469 (918)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 469 (918)
-..+|..-...|.+.+.++-|..+|...+.-- +.+...|......--
T Consensus 515 ----------------------~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek---------- 561 (913)
T KOG0495|consen 515 ----------------------RKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEK---------- 561 (913)
T ss_pred ----------------------hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHH----------
Confidence 01567888888889999999999998887642 334445544443322
Q ss_pred HHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 043758 470 IVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMING 549 (918)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (918)
..|..+.-..+|.+....-+ .....|-....-+-..|+...|..++..+.+.. +.+...|-..+..
T Consensus 562 ------------~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKl 627 (913)
T KOG0495|consen 562 ------------SHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKL 627 (913)
T ss_pred ------------hcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 23566777778888887633 366677777777888899999999999998875 4467788888888
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043758 550 YLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFA 629 (918)
Q Consensus 550 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 629 (918)
-..+..++.|..+|.+.... .|+...|.--+...--.++.++|++++++.++. ++.-...|..+.+.+-+.++.+.|
T Consensus 628 e~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999998865 577778877777667788999999999988875 344456777777788888888888
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHH
Q 043758 630 SRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTV 709 (918)
Q Consensus 630 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a 709 (918)
...|..-.+
T Consensus 705 R~aY~~G~k----------------------------------------------------------------------- 713 (913)
T KOG0495|consen 705 REAYLQGTK----------------------------------------------------------------------- 713 (913)
T ss_pred HHHHHhccc-----------------------------------------------------------------------
Confidence 777665431
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 710 QKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
.++..+..|-++...--+.|.+-.|..++++..-.+ +-|...|...|..-.+.|+.+.|..+..++++.
T Consensus 714 ----------~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 714 ----------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred ----------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223356778888888888889999999999887654 335668888899999999999999998888876
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHH
Q 043758 790 GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCN 869 (918)
Q Consensus 790 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 869 (918)
++-+...|..-|....+.++-......+++ ...|++.+-.+...|.....+++|.+.|.+....+ |.+..+|.
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa 855 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWA 855 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHH
Confidence 555778888888888777776555555554 35677777788888888899999999999999887 77788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 870 WLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 870 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+-..+...|.-++-.+++.+.....
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 88899999999888888888776554
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=2.4e-16 Score=177.34 Aligned_cols=253 Identities=13% Similarity=0.033 Sum_probs=154.9
Q ss_pred CChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHH
Q 043758 484 GNLDSALDILDQMEVRG--PKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQ 561 (918)
Q Consensus 484 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 561 (918)
+++++|...|+...+.+ .+.....++.+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566666666666543 12234456666666777777777777777776652 2234566666666777777777777
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043758 562 LFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI 641 (918)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 641 (918)
.|+++.+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++.++.
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 777776653 2344566666666777777777777777776653 334555666666666777777777666665421
Q ss_pred CccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCC
Q 043758 642 EFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEF 721 (918)
Q Consensus 642 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 721 (918)
.
T Consensus 463 -------------------------------------------------------------------------------~ 463 (615)
T TIGR00990 463 -------------------------------------------------------------------------------F 463 (615)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH--H------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043758 722 MPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ--V------TFCILINGHIAAGEIDQAIGLFNQMNADGCVP 793 (918)
Q Consensus 722 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 793 (918)
+.++..++.+...+...|++++|+..|++.... .|+. . .++..+..+...|++++|.+++++.+.... .
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~ 540 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-E 540 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-C
Confidence 234556666677777777777777777777663 2221 1 111111222335777777777777666421 1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
+...+..+..++...|++++|+..+++..+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334566777777777777777777777664
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5.6e-17 Score=181.09 Aligned_cols=267 Identities=11% Similarity=0.088 Sum_probs=153.6
Q ss_pred hhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 043758 62 QSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDG 141 (918)
Q Consensus 62 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (918)
.+++..+..+....|++++|...|+++.+.+|. ++.++..+...+...|++++|+..|+++.... +.+...+..++..
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~ 153 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRT 153 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 333333333334566666666666666665543 45566666666666667777776666666553 3445566666666
Q ss_pred HHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHH
Q 043758 142 LCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221 (918)
Q Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 221 (918)
+...|+.++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++
T Consensus 154 l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 154 LVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 666667666666666655411 1112222222 2355566666666666666555333333344444556666666666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043758 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDK----GWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLN 297 (918)
Q Consensus 222 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 297 (918)
|+..|+++.+.. +.+...+..+...+...|++++ |...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 231 A~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 231 AIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666542 2233455556666666666664 566666666553 3345566666666666666666666666
Q ss_pred HHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 298 SKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 298 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+..... +.+...+..+..++.+.|++++|...|+++..
T Consensus 309 ~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 309 QSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666554 23344555566666666666666666666654
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=4.2e-16 Score=175.33 Aligned_cols=427 Identities=13% Similarity=0.019 Sum_probs=231.1
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF 147 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 147 (918)
.+..+.+.|+++.|+..|+.+++.. |++..|..+..+|.+.|++++|+..++.+++.. +.+...|..+..++...|+
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 3455689999999999999998866 567789999999999999999999999999876 5567789999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 043758 148 LDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFF 227 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 227 (918)
+++|+.-|..+....+.. ......++.-+.. ..+........+.... +...+..+.. |...........-+.
T Consensus 210 ~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 210 YADALLDLTASCIIDGFR--NEQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhh
Confidence 999999888776521111 1111111111111 1222222333222111 2222222222 211111111111111
Q ss_pred HHHhcCCCCCh-hhHHHHHHH---HHhcCChhHHHHHHHHHHhCC-C-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 228 RMLKTGCEPDS-YTCNTLIHG---FFKMGLFDKGWVLYSQMSDWG-F-QPNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 228 ~m~~~~~~p~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
...+. .++. ..+..+... ....+++++|.+.|+...+.+ . +.....+..+...+...|++++|...|+....
T Consensus 282 ~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred ccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11110 1110 011111100 012345556666666655543 1 12233455555555566666666666666555
Q ss_pred CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhh
Q 043758 302 SNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLAR 381 (918)
Q Consensus 302 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 381 (918)
.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...+....+..
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-------- 429 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-------- 429 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------
Confidence 43 2233455555555666666666666666555432 1122233333333444444444444443333322
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 043758 382 SISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQV 461 (918)
Q Consensus 382 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 461 (918)
|. +...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...
T Consensus 430 ---------------------------P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 430 ---------------------------PD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQ 480 (615)
T ss_pred ---------------------------cc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 11 12445667778888899999999998887642 33445566666666555
Q ss_pred CChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043758 462 GFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVA------IYDAIIGHLCKEKRILEAEDMFKRMLKAG 535 (918)
Q Consensus 462 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (918)
| ++++|...|++..+..+..+.. .++.....+...|++++|.+++++..+..
T Consensus 481 g----------------------~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 481 N----------------------KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred c----------------------CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4 5555666666655543221111 11222222333567777777777766543
Q ss_pred CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043758 536 IDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN 569 (918)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 569 (918)
+.+...+..+...+...|++++|++.|++..+.
T Consensus 539 -p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 539 -PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred -CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 233445666666677777777777777666543
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=4.3e-14 Score=148.82 Aligned_cols=664 Identities=13% Similarity=0.071 Sum_probs=388.8
Q ss_pred HcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHH
Q 043758 143 CYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMA 222 (918)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 222 (918)
...|+.++|.+++.++++ ..+.+...|..|...|-+.|+.+++...+--....++. |...|..+.....+.|+++.|
T Consensus 150 farg~~eeA~~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 345888888888888876 34556677888888888888888888777666665554 677888888888888888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHh----hHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 223 MRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMV----TDLIMISNYCREGEVDAALMLLNS 298 (918)
Q Consensus 223 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 298 (918)
.-+|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|.. .--..++.|...++.+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888763 3343444444556778888888888888887764222221 222345666777777888888877
Q ss_pred HhhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCC
Q 043758 299 KVSS-NLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGID 377 (918)
Q Consensus 299 ~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (918)
.... +-..+...++.++..+.....++.|......+......+|..-+.+-- ....-.......+...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~----------~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE----------RRREEPNALCEVGKELS 375 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh----------hccccccccccCCCCCC
Confidence 6652 123455667888888888888888888887776644444433221000 00000000011111111
Q ss_pred hhh---hHHHhhcCCCCChHHHHHHHHHHHHhcC--CCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHH
Q 043758 378 PLA---RSISATLNPTGDLCQEIELLLRKIVKSD--PKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCN 452 (918)
Q Consensus 378 ~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 452 (918)
... .....+..... .+...-++......+ +.-....|..+..++...|++.+|+.+|..+.......+...|.
T Consensus 376 ~~l~v~rl~icL~~L~~--~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKE--RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred ccchhHhHhhhhhcccc--cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 111 11111222111 122333333344444 44445778899999999999999999999999875455566888
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 453 TLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRML 532 (918)
Q Consensus 453 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 532 (918)
.+..++...| ..+.|...++.++...+. +..+--.|...+.+.|+.++|.+.++.+.
T Consensus 454 ~~a~c~~~l~----------------------e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 454 KLARCYMELG----------------------EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHh----------------------hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8888877665 455556666666655332 55566667777788888888888888754
Q ss_pred H--------CCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-----------------CCCCchhHHHHH
Q 043758 533 K--------AGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN-----S-----------------VQPGSYPYTALI 582 (918)
Q Consensus 533 ~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-----------------~~~~~~~~~~l~ 582 (918)
. .+..|+........+.+...|+.++=+.+...|+.. - .+-...+...++
T Consensus 511 ~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~ 590 (895)
T KOG2076|consen 511 NPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQII 590 (895)
T ss_pred CCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHH
Confidence 2 123344444444555666777776654444444321 0 111222333334
Q ss_pred HHHHhcCChhHHHHHHH------HHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 043758 583 SGLVKKGMVDLGCMYLD------RMLADGFVPNV--VLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSG 654 (918)
Q Consensus 583 ~~~~~~g~~~~a~~~~~------~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 654 (918)
.+-.+.++......... .-...|...+. ..+.-++.++.+.+++++|..+...+.....--...--..-+.
T Consensus 591 ~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~- 669 (895)
T KOG2076|consen 591 RAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQ- 669 (895)
T ss_pred HHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHH-
Confidence 44444333222222111 11111222222 3456677788899999999999888876542111111000000
Q ss_pred HhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhc-CC---CCChhhHHH
Q 043758 655 VCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDI-EF---MPNLYLYND 730 (918)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~-~~---~~~~~~~~~ 730 (918)
.....+.+..+++..+...++.+... ++ +--...||.
T Consensus 670 ---------------------------------------~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~ 710 (895)
T KOG2076|consen 670 ---------------------------------------FLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNL 710 (895)
T ss_pred ---------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 00111223347777777777766532 11 123467776
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-
Q 043758 731 IFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILING--HIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLL-KGLC- 806 (918)
Q Consensus 731 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~- 806 (918)
.++...+.++-.-=.+.+..... .+|+......+|.+ +...+.+..|+..+-.+... .||...++..+ .++.
T Consensus 711 ~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 711 DFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHH
Confidence 66666666554443444443332 22332222222222 35677888888877666553 45533333222 2221
Q ss_pred ---------HcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCC------------
Q 043758 807 ---------QAGRLSHVFSVFYSMHKRGFV-PKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPC------------ 864 (918)
Q Consensus 807 ---------~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------ 864 (918)
++-.+-++..++.+..+.... -....+-.+..+|-..|-..-|..++++.++.. |++
T Consensus 787 ~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~-p~~~~~~~~d~~dLr 865 (895)
T KOG2076|consen 787 LALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS-PKDVTDPKEDNYDLR 865 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC-ccccccccCCcccHH
Confidence 112355677777777653211 144566778889999999999999999998764 222
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 865 LSNCNWLLNILCQEKHFHEAQIVLDV 890 (918)
Q Consensus 865 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 890 (918)
..+-+.|.-+|.++|+...|.+++++
T Consensus 866 keAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 866 KEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 23345678899999999999999875
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.4e-16 Score=178.01 Aligned_cols=266 Identities=11% Similarity=0.013 Sum_probs=216.6
Q ss_pred HHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 043758 64 ALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC 143 (918)
Q Consensus 64 a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (918)
.+..|...+.+.|+.++|+.+++..+...+. +..++..++.++...|++++|+..|+++.... |.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445555568889999999999999888765 45567777788888999999999999999886 567778888999999
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 043758 144 YKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAM 223 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 223 (918)
..|++++|+..++.+.+. .+.+...+..+..++...|++++|...++.+....+. +...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 999999999999999871 2344667788888999999999999999988776544 34444444 3478899999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHH----HHHHHHHH
Q 043758 224 RLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDA----ALMLLNSK 299 (918)
Q Consensus 224 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~ 299 (918)
..++.+.+....++...+..+..++...|++++|.+.++.+.... +.+...+..+...|...|++++ |...|+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999998876433344455566778889999999999999999875 5567788889999999999985 89999999
Q ss_pred hhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 300 VSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 300 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
.+.. |.+...+..+...+...|++++|...+++....
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8875 456778899999999999999999999998764
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=8.6e-13 Score=133.40 Aligned_cols=614 Identities=13% Similarity=0.040 Sum_probs=423.2
Q ss_pred hhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHH
Q 043758 7 GLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFD 86 (918)
Q Consensus 7 ~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~ 86 (918)
+.+..|+.+++++...+|..+.+--+...+.+....... +-+.+.+.|...++.++.+.-- .+.-..+.|..+..
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~-Ar~~I~~GCe~cprSeDvWLea----iRLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSV-ARNLIMKGCEECPRSEDVWLEA----IRLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHH-HHHHHHHHHhhCCchHHHHHHH----HhcCChHHHHHHHH
Confidence 456789999999999998887776666655555333332 3455566666666665543221 44455666777777
Q ss_pred HHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCC
Q 043758 87 RLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVP 166 (918)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (918)
.+....|. ++..| +.+---..+...=..++++.++. +|.++..|- +.....+.+.|+-++.+..+ -++.
T Consensus 340 ~Avr~~P~-Sv~lW---~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAve--ccp~ 408 (913)
T KOG0495|consen 340 NAVRFLPT-SVRLW---LKAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVE--CCPQ 408 (913)
T ss_pred HHHHhCCC-Chhhh---hhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHH--hccc
Confidence 77766533 34344 22222223344445566666655 244544553 34455666778889988886 2333
Q ss_pred CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH----hcCCCCChhhHH
Q 043758 167 ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRML----KTGCEPDSYTCN 242 (918)
Q Consensus 167 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~ 242 (918)
+...| .+|++..-++.|..++...++. ++.+...|.+-...--.+|+.+....+..+-. ..|+..+...|.
T Consensus 409 s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 33444 4455667788999999998886 45588888888877788899888888877643 467788888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 243 TLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 243 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
.=...|-..|..-.+..+....+..|+... ..||+.-...|.+.+.++-|+.+|...++.. +.+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHh
Confidence 888888888888888888888888776543 4588888888999999999999998888754 4566677776666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHH
Q 043758 321 HNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELL 400 (918)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 400 (918)
.|..++...+|++....-.
T Consensus 563 hgt~Esl~Allqkav~~~p------------------------------------------------------------- 581 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCP------------------------------------------------------------- 581 (913)
T ss_pred cCcHHHHHHHHHHHHHhCC-------------------------------------------------------------
Confidence 7778888888877765421
Q ss_pred HHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCc
Q 043758 401 LRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGN 480 (918)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 480 (918)
.....|......+-..|+...|..++.+..+.. +.+...|-..+......
T Consensus 582 ----------kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en------------------- 631 (913)
T KOG0495|consen 582 ----------KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEN------------------- 631 (913)
T ss_pred ----------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcc-------------------
Confidence 112456666777777888888888888887764 22444555555544433
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHcCCChHHH
Q 043758 481 CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD-EVFFTTMINGYLQNRKPIEA 559 (918)
Q Consensus 481 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 559 (918)
..++.|..+|.+... ..|+..+|.--+...--.+..++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|
T Consensus 632 ---~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 632 ---DELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred ---ccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHH
Confidence 456666666766655 3556667766666667778999999999998876 444 45677777888889999999
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043758 560 CQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTN 639 (918)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 639 (918)
.+.|..-.+. ++-....|..|.+.=-+.|.+..|..++++..-.+ +.+...|-..+..-.+.|+.+.|..++.+.++.
T Consensus 705 R~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 705 REAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9888776654 23334556666666667889999999999988775 668889999999999999999998888777642
Q ss_pred CCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhc
Q 043758 640 QIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDI 719 (918)
Q Consensus 640 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 719 (918)
T Consensus 783 -------------------------------------------------------------------------------- 782 (913)
T KOG0495|consen 783 -------------------------------------------------------------------------------- 782 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043758 720 EFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYN 799 (918)
Q Consensus 720 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 799 (918)
++.+...|..-|....+.++-......+++ ..-|......+...+-....+++|++-|...+..+. -...+|.
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa 855 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWA 855 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHH
Confidence 122334455555454444454444333333 234556666677777778889999999988887522 2458888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA 831 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 831 (918)
.+...+.+.|.-++-.+++..+.. ..|...
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~--~EP~hG 885 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCET--AEPTHG 885 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhc--cCCCCC
Confidence 888888899988888888888874 455544
No 27
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.80 E-value=8.8e-15 Score=152.74 Aligned_cols=733 Identities=12% Similarity=0.028 Sum_probs=375.8
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCC
Q 043758 84 HFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKG 163 (918)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (918)
.+..+...|+.|+.++|..++.-|+..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3455667789999999999999999999999988 8888887787888889999999998888887665
Q ss_pred CCCCcccHHHHHHHHhccCchH---HHHHHHHHHHh----CCCCCChhhH---------------HHHHHHHhcCCChHH
Q 043758 164 LVPALHPYKSLFYALCKNIRTV---EAESFAREMES----QGFYVDKLMY---------------TSLINGYCSNRNMKM 221 (918)
Q Consensus 164 ~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~----~~~~~~~~~~---------------~~li~~~~~~g~~~~ 221 (918)
.|.+.+|..|+.+|.+.|+.. .+++.++.+.. .|+. ....| ..++......|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 578899999999999999864 45553433332 2322 11111 112233333445555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 222 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
+++++..+.-... + .++-.+++-+.... ....++.......--.|+..++..+++.-...|+.+.|..++.+|.+
T Consensus 158 llkll~~~Pvsa~--~-~p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAW--N-APFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHhhCCcccc--c-chHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 5555544432210 1 01112344444332 22333333332221168999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChh--
Q 043758 302 SNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPL-- 379 (918)
Q Consensus 302 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 379 (918)
.|++.+...|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...+....+.. +...+..
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~hg~t 301 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAHGFT 301 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhhhhh
Confidence 9999999988888877 78888899999999999999999999887777666443222111 1111100
Q ss_pred hhHHHhhcCC--CCCh--HHHHHHHH---HHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCC-Ccc
Q 043758 380 ARSISATLNP--TGDL--CQEIELLL---RKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFG--YRP-LVF 449 (918)
Q Consensus 380 ~~~~~~~~~~--~~~~--~~~a~~~~---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~ 449 (918)
.....+.... ..+. .+.+..+. .+..-.+......+|...+.. ..+|+-+....+-..+..-- ..+ ++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 0000000000 0000 00111111 111111111111223222221 11333333333322222110 000 111
Q ss_pred cHHHHHHHHHh----------------------cCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHH----cCCC-
Q 043758 450 TCNTLIKCFYQ----------------------VGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEV----RGPK- 502 (918)
Q Consensus 450 ~~~~li~~~~~----------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~- 502 (918)
.+..++.-|.+ ..+.....++...... ..+.+.+..... +-..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrk----------ns~lr~lv~Lss~Eler~he~ 450 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRK----------NSFLRQLVGLSSTELERSHEP 450 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCc----------chHHHHHhhhhHHHHhccccc
Confidence 11111111111 1111111111111111 111111111100 0000
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCC
Q 043758 503 ------PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN--SVQPG 574 (918)
Q Consensus 503 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 574 (918)
+=...-+.++..++..-+..+++..-+.....- -+-.|..+|+-++.....+.|..+.++.... .+..+
T Consensus 451 ~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld 527 (1088)
T KOG4318|consen 451 WPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLD 527 (1088)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcc
Confidence 011223444445555444444444333333221 1134666666666666666666666666432 23345
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHH---
Q 043758 575 SYPYTALISGLVKKGMVDLGCMYLDRMLAD--GFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYI--- 649 (918)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--- 649 (918)
..-+..+.+.+.+.+....+..++.++.+. +-.....++-.+++.....|+.+...++++-+...|+..+...|.
T Consensus 528 ~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhL 607 (1088)
T KOG4318|consen 528 LPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHL 607 (1088)
T ss_pred cHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEe
Confidence 555666666666666666666666666554 111112334445555555666666666665555544322111000
Q ss_pred ---------HHHH-HHhhhcccccccccccccchhhhHHHHHHhh-cCcccccchhhh---HHHHHhCCChhHHH-----
Q 043758 650 ---------ALVS-GVCRRITGRKKWLDVNRCSDSGKEMLFHKLQ-QGTLVTRTKSTA---FSAVFSNGKKGTVQ----- 710 (918)
Q Consensus 650 ---------~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~g~~~~a~----- 710 (918)
.+-. .+-+....... .+.+-+... ..........+. ...+.++|++.++-
T Consensus 608 rkdd~s~a~ea~e~~~qkyk~~P~~-----------~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et 676 (1088)
T KOG4318|consen 608 RKDDQSAAQEAPEPEEQKYKPYPKD-----------LEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET 676 (1088)
T ss_pred eccchhhhhhcchHHHHHhcCChHH-----------HHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc
Confidence 0000 00000000000 000111111 000000000000 00133344444443
Q ss_pred ----------------------HHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 043758 711 ----------------------KIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILIN 768 (918)
Q Consensus 711 ----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 768 (918)
...+.+.+.| ...-++..|.+.|+++.|..+|.++. +.|+..+...|..
T Consensus 677 pG~r~r~~RDr~~de~e~~~lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAs 747 (1088)
T KOG4318|consen 677 PGVRCRNGRDRDTDEGEIVPLELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLAS 747 (1088)
T ss_pred CcccccCCCccccccCccccHHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHH
Confidence 3333333222 12237788899999999999999988 6777777666666
Q ss_pred HHHhc---CCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 043758 769 GHIAA---GEIDQAIGLFNQMNAD--GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN 843 (918)
Q Consensus 769 ~~~~~---g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 843 (918)
.+.+. -++.++...-++.... .+..+...|..-+...++...-+.|.+.+.+..+.....+..++..++.++...
T Consensus 748 Ilr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~n 827 (1088)
T KOG4318|consen 748 ILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKN 827 (1088)
T ss_pred HHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhc
Confidence 55543 2555555555555443 222233444444444555566668888998888775555777888888875544
Q ss_pred CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 043758 844 CLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQI 886 (918)
Q Consensus 844 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 886 (918)
. ..|...... |.......-..++..+.+...|.+|..
T Consensus 828 d--~~aa~sha~----Ges~~~l~tsRli~~llRrlgl~EA~~ 864 (1088)
T KOG4318|consen 828 D--QLAAQSHAS----GESSKELLTSRLINILLRRLGLAEALS 864 (1088)
T ss_pred C--HHHHHhccc----ccchhhhhhHHHHHHHHHHhhHHHHHH
Confidence 4 222222221 323333344556667777777777776
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=2.4e-15 Score=172.16 Aligned_cols=410 Identities=9% Similarity=0.010 Sum_probs=287.9
Q ss_pred CchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHH
Q 043758 411 LANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSAL 490 (918)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~ 490 (918)
.++......+......|+.++|+.++....... +.....+..+..++... |++++|.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~----------------------g~~~~A~ 69 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL----------------------KQWQNSL 69 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc----------------------CCHHHHH
Confidence 334555667777888999999999988887522 23333456666665544 4666677
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 043758 491 DILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS 570 (918)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 570 (918)
.++++..+..+ .+...+..++..+...|++++|...++++.+.. +.+.. +..+..++...|++++|+..++++.+..
T Consensus 70 ~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 70 TLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77777776533 356677788888888999999999999988763 44555 7778888888999999999999988863
Q ss_pred CCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHH
Q 043758 571 VQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNV------VLYTALINHFL-----RAGEF---EFASRLENLM 636 (918)
Q Consensus 571 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~ 636 (918)
+.+...+..+..++...|..+.|+..++.... .|+. .....++.... ..+++ ++|+..++.+
T Consensus 147 -P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 147 -PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 22444555667777778888888888876553 2221 01111222221 11223 5667777776
Q ss_pred HHC-CCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHH
Q 043758 637 VTN-QIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLK 715 (918)
Q Consensus 637 ~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 715 (918)
.+. ...|+... .... ........+...|++++|+..|+.
T Consensus 223 l~~~~~~p~~~~--~~~~--------------------------------------a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 223 EALWHDNPDATA--DYQR--------------------------------------ARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HhhcccCCccch--HHHH--------------------------------------HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 643 12222110 0000 000111233455899999999999
Q ss_pred HHhcCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 716 VKDIEFM-PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN-----QVTFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 716 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
+.+.+.+ |+ .....+...|...|++++|+..|+++.+.. |. ......+..++...|++++|.++++.+.+.
T Consensus 263 ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 263 LKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred hhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 9877532 22 122335778999999999999999987642 32 234566777889999999999999999875
Q ss_pred C-----------CCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 043758 790 G-----------CVPD---KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKE 855 (918)
Q Consensus 790 ~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 855 (918)
. -.|+ ...+..+...+...|++++|+++++++... .+.+...+..+...+...|++++|++.+++
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 1123 234566778899999999999999999864 344666788888899999999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 856 MIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 856 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
++... |.+...+..++..+...|++++|..+++++.+..
T Consensus 419 al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 419 AEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99987 7788999999999999999999999999998764
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=2.4e-15 Score=172.16 Aligned_cols=398 Identities=13% Similarity=0.010 Sum_probs=247.9
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYAL 178 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 178 (918)
-..-.+.+....|+.++|+.+|.+..... +.+...+..+..++...|++++|.+.++...+. .+.+...+..+..++
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l 93 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 33445555666777777777777766532 334445777777777777777777777777651 233344555666667
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHH
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKG 257 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a 257 (918)
...|++++|...+++..+..+. +.. +..+..++...|+.++|+..++++.+. .|+ ...+..+..++...+..+.|
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHH
Confidence 7777777777777777766333 455 777777777777777777777777765 333 33445556666666777777
Q ss_pred HHHHHHHHhCCCCccH------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHhhCC-CCCCcc-hH----HHHHHH
Q 043758 258 WVLYSQMSDWGFQPNM------VTDLIMISNYC-----REGEV---DAALMLLNSKVSSN-LAPSVH-CY----TVLIDA 317 (918)
Q Consensus 258 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~-~~~~~~-~~----~~ll~~ 317 (918)
.+.++.... .|+. .....++..+. ..+++ ++|++.++.+.+.- ..|+.. .+ ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 777765543 1221 01112222221 12233 67888888777531 122221 11 111345
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC-CChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHH
Q 043758 318 LYKHNRLMEVDELYKKMLANRVA-PDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQE 396 (918)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (918)
+...|++++|+..|+.+.+.+.. |+..
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a---------------------------------------------------- 274 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWA---------------------------------------------------- 274 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHH----------------------------------------------------
Confidence 56778899999999988776422 2211
Q ss_pred HHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCc-----ccHHHHHHHHHhcCChhhHHHHH
Q 043758 397 IELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLV-----FTCNTLIKCFYQVGFLEGANAIV 471 (918)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~ 471 (918)
...+...|...|++++|+..|+++.... |.. .....+..++...+
T Consensus 275 -------------------~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g--------- 324 (765)
T PRK10049 275 -------------------QRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESE--------- 324 (765)
T ss_pred -------------------HHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcc---------
Confidence 1113456677777777777777766532 221 12333333444443
Q ss_pred HHhhcccCccccCChHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043758 472 ELMQDTEGNCKWGNLDSALDILDQMEVRGP-----------KPS---VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGID 537 (918)
Q Consensus 472 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 537 (918)
++++|...++.+....+ .|+ ...+..+...+...|++++|+++++++.... +
T Consensus 325 -------------~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P 390 (765)
T PRK10049 325 -------------NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-P 390 (765)
T ss_pred -------------cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 44444444444443311 123 2345667778888899999999999988763 5
Q ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-chhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 538 PDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPG-SYPYTALISGLVKKGMVDLGCMYLDRMLAD 604 (918)
Q Consensus 538 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 604 (918)
.+...+..+...+...|++++|++.+++..... |+ ...+......+...|++++|..+++++++.
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 567778888888889999999999999888763 44 455566666788888999999999998886
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.2e-14 Score=162.04 Aligned_cols=443 Identities=11% Similarity=0.013 Sum_probs=307.0
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHc
Q 043758 421 SALCKGGKYEKAYVCLFQLVNFGYRPLVF-TCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVR 499 (918)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 499 (918)
-...+.|+++.|+..|++..+. .|+.. ....++..+...| +.++|+..+++....
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G----------------------~~~~A~~~~eka~~p 97 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAG----------------------RDQEVIDVYERYQSS 97 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcC----------------------CcHHHHHHHHHhccC
Confidence 3456889999999999999875 35542 2336666655444 556666677776621
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHH
Q 043758 500 GPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYT 579 (918)
Q Consensus 500 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 579 (918)
.+.+......+...+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.+. .|+...+.
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l 173 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYM 173 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHH
Confidence 12234444445667888899999999999998874 344666667778888889999999999988876 45555554
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHH--HHHHhh
Q 043758 580 ALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIAL--VSGVCR 657 (918)
Q Consensus 580 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l--l~~~~~ 657 (918)
.++..+...++..+|+..++++.+.. +.+...+..++.++.+.|-...|.++...-... +.+...-+... +....+
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHh
Confidence 44444444566666899999988874 456777788888888888888887666543210 22222111000 000011
Q ss_pred hcccccccccccc--cchhhhHHHHHHhh---cCcc----cccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhH
Q 043758 658 RITGRKKWLDVNR--CSDSGKEMLFHKLQ---QGTL----VTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLY 728 (918)
Q Consensus 658 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 728 (918)
....... ..-++ .+...-..+...+. ..|. ......+-+-++...|++.++++.++.+...+.+....+-
T Consensus 252 ~a~~~~~-~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 252 MAVLPTR-SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hcccccc-cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 0000000 00000 01111111122222 2232 1233446666888899999999999999988877677788
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCC-----CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------C
Q 043758 729 NDIFLLLCGVGRMDDAYDHFQMMKREGL-----RPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGC-----------V 792 (918)
Q Consensus 729 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~ 792 (918)
..+.++|...+++++|..+|+++..... .++......|..+|...+++++|..+++.+.+... .
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 9999999999999999999999976431 22333357789999999999999999999988411 2
Q ss_pred CCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHH
Q 043758 793 PDK---TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCN 869 (918)
Q Consensus 793 p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 869 (918)
|++ ..+..++..+...|++.+|++.++++... -+-|......+...+...|++..|+..++.+.... |.+..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHH
Confidence 332 34455677788999999999999999863 34477788899999999999999999998888775 77888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 870 WLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 870 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
..+.++...|+|.+|..+.+.+.+.-.
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 999999999999999999988766553
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.3e-14 Score=134.16 Aligned_cols=343 Identities=18% Similarity=0.246 Sum_probs=231.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhH-HHHHHHHHHhCCCCccHhhHHHHH
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHG--FFKMGLFDK-GWVLYSQMSDWGFQPNMVTDLIMI 280 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~ 280 (918)
.+-|.|+.. +..|..+++.-+|++|.+.|++.+...--.|++. |..+.++-- -++.|-.|.+.| ..+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc----
Confidence 344555543 3567777777778888777766665554444442 222223222 234555555555 3333333
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHH
Q 043758 281 SNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQ 360 (918)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 360 (918)
+.|++.+ ++-+.. +.+..++..||.++++-...+.|.++|++-.+...+.+..+|+.++.+.
T Consensus 191 ----K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~------- 252 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGAS------- 252 (625)
T ss_pred ----ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHH-------
Confidence 3454443 333333 5677889999999998888888999988888777777777776665421
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHH
Q 043758 361 HALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLV 440 (918)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 440 (918)
.|.. ..+++.+|.
T Consensus 253 -------------------------------------------------------------S~~~------~K~Lv~EMi 265 (625)
T KOG4422|consen 253 -------------------------------------------------------------SYSV------GKKLVAEMI 265 (625)
T ss_pred -------------------------------------------------------------Hhhc------cHHHHHHHH
Confidence 1111 156777888
Q ss_pred HCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043758 441 NFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKR 520 (918)
Q Consensus 441 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 520 (918)
.....||..|+|+++.+.++.|+++.|.. .|.+++.+|++.|+.|+..+|..++..+++.++
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARK------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHH------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCC
Confidence 88889999999999999999888877653 577889999999999999999999998888877
Q ss_pred HHH-HHHHHHHHHH----CCC----CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC----CCCC---chhHHHHHHH
Q 043758 521 ILE-AEDMFKRMLK----AGI----DPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS----VQPG---SYPYTALISG 584 (918)
Q Consensus 521 ~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~ 584 (918)
..+ +..++.++.. +.+ +.+...|...+..|....+.+-|.++..-+.... +.|+ ..-|..+...
T Consensus 328 p~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 328 PQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDL 407 (625)
T ss_pred chhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHH
Confidence 643 4555555543 222 2345667777888888888888877766554221 2232 2335567777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 043758 585 LVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGV 655 (918)
Q Consensus 585 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 655 (918)
.|.....+.-..+|+.|+-.-+-|+..+...++.+..-.|.++-.-++|.++...|.......-..++..+
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 78888888888999999887777888888888898888888888888888888766444433333333333
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=7.9e-14 Score=155.69 Aligned_cols=443 Identities=11% Similarity=0.012 Sum_probs=286.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|+++.|+..|+++++.++.-.+..+ .++..+...|+.++|+..+++..... +.+......++..+...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999988754222233 88888888999999999999988222 222223333356788889999999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
++|+.+.+. .+.+...+..++..+...++.++|...++++.... |+...+..++..+...++..+|++.++++.+.
T Consensus 123 ely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 123 ALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999872 23345666677888999999999999999998873 34455544444444466776799999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhH------HHHHHHH---H--hcCC---HHHHHHHHHH
Q 043758 233 GCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTD------LIMISNY---C--REGE---VDAALMLLNS 298 (918)
Q Consensus 233 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g~---~~~A~~~~~~ 298 (918)
. +-+...+..+..++.+.|-...|.++.++-... +.+....+ ..++..- . ...+ .+.|..-++.
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 3 234556788888999999999998877764322 11111111 1111110 0 1112 3444555555
Q ss_pred HhhCC-CCCCc-chH----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 043758 299 KVSSN-LAPSV-HCY----TVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKI 372 (918)
Q Consensus 299 ~~~~~-~~~~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (918)
+...- ..|.. ..| .-.+-++...|++.++++.|+.|...+.+.-.
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~----------------------------- 327 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD----------------------------- 327 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH-----------------------------
Confidence 44321 11221 222 23345666777888888888888766543222
Q ss_pred CCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCC-----CCC
Q 043758 373 GCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGY-----RPL 447 (918)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~ 447 (918)
.+-..+.++|...+++++|+.+|+.+..... .++
T Consensus 328 -----------------------------------------y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~ 366 (822)
T PRK14574 328 -----------------------------------------YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD 366 (822)
T ss_pred -----------------------------------------HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc
Confidence 3345666777777777777777777754321 112
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 043758 448 VFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSV-AIYDAIIGHLCKEKRILEAED 526 (918)
Q Consensus 448 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 526 (918)
......|.-++...+++++|..+++.+.+...+ ...+ +. .....+.||- ..+..++..+.-.|++.+|++
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~~~~-------~~-~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-QVGV-------YG-LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-EEec-------cC-CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 222345555555555444444433333221000 0000 00 0000122332 234456677888999999999
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 527 MFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD 604 (918)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 604 (918)
.++++.... |-|......+...+...|.+.+|.+.++...... +-+..+....+.++...|++.+|..+.+.+.+.
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999998764 6688889999999999999999999997777652 334566677788888999999999999999876
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=3.3e-14 Score=136.05 Aligned_cols=468 Identities=14% Similarity=0.088 Sum_probs=307.7
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH--cCCChhHH-HHHHHHHHhcCCCCCCcccHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC--YKGFLDEV-LEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
+=|.+++. ...|.+.++.-+|+.|...+++.+...-..+++.-+ ...++.-| .+.|-.|.+ .| ..+..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~-~~-E~S~~sW---- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRN-FG-EDSTSSW---- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccc-cc-ccccccc----
Confidence 45566654 677899999999999999998888777766665533 33333323 244555543 22 2333444
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD 255 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 255 (918)
+.|.+.+ ++-+..-+ +..+|.+||.+.++--..+.|.+++++......+.+..+||.+|.+-.- .
T Consensus 191 ----K~G~vAd---L~~E~~PK----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~ 255 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPK----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----S 255 (625)
T ss_pred ----ccccHHH---HHHhhcCC----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----h
Confidence 3344433 33333322 7889999999999999999999999999887778899999999876543 2
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH----HHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhH-HHHH
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAA----LMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLME-VDEL 330 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~ 330 (918)
...+++.+|....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++-+++.+ |..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 3378999999999999999999999999999988765 5677889999999999999999999999888754 4455
Q ss_pred HHHHHh----CCCCC----ChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHH
Q 043758 331 YKKMLA----NRVAP----DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLR 402 (918)
Q Consensus 331 ~~~~~~----~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 402 (918)
+.+++. ...+| |...|...+..|....|.+.|.++...........- .+..
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~------------ig~~--------- 394 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF------------IGPD--------- 394 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh------------cChH---------
Confidence 555543 22333 445677888889888888888877665443211100 0000
Q ss_pred HHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccc
Q 043758 403 KIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCK 482 (918)
Q Consensus 403 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 482 (918)
.-...-|..+....+.....+.-..+|+.|.-.-+-|+..+...++++....+.++-..+++..+... ..
T Consensus 395 -------~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~---gh 464 (625)
T KOG4422|consen 395 -------QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY---GH 464 (625)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh---hh
Confidence 00113456677778888888999999999987777788888889999888888887777777766532 22
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH-HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHH
Q 043758 483 WGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKE-KRI-LEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEAC 560 (918)
Q Consensus 483 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 560 (918)
.-+-+-...++..+....+.|+...-..+-....++ -++ +..+..-.++.+.. .+....+...-.+.+.|..++|.
T Consensus 465 t~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~ 542 (625)
T KOG4422|consen 465 TFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAW 542 (625)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHH
Confidence 223334445555555555555433222222222222 111 22222233344433 34445666666778889999999
Q ss_pred HHHHHHHhCC-CCCCchhHH---HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 561 QLFEKMKENS-VQPGSYPYT---ALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFL 621 (918)
Q Consensus 561 ~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 621 (918)
++|..+.+.+ --|-....+ .+++.-...++...|...++-|...+++.-...-+.++..|.
T Consensus 543 e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 543 EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 9998886543 223333344 556666677888888888888876653322223344444443
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=5.3e-14 Score=147.06 Aligned_cols=715 Identities=13% Similarity=0.045 Sum_probs=387.5
Q ss_pred HHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 118 DYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.++-.+...|+.||..||..+|..|+..|+.+.|- +|.-|.- .+.+.+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC---------
Confidence 45566778899999999999999999999999999 9999987 778889999999999999999887776
Q ss_pred CCCCChhhHHHHHHHHhcCCChHH---HHHHHHHHH----hcCCCCChhh--------------HHHHHHHHHhcCChhH
Q 043758 198 GFYVDKLMYTSLINGYCSNRNMKM---AMRLFFRML----KTGCEPDSYT--------------CNTLIHGFFKMGLFDK 256 (918)
Q Consensus 198 ~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~p~~~~--------------~~~ll~~~~~~g~~~~ 256 (918)
.|-..+|..|..+|...||... ..+.+..+. ..|+.....- -..++.-....|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5688999999999999998654 333222222 1121110111 1122223344455566
Q ss_pred HHHHHHHHHhCCCCccHhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 257 GWVLYSQMSDWGFQPNMVTDLIMISNYCRE-GEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
+.+++..+...... .+... ++.-.... ..+++-..+...... .|+..+|.+++.+-..+|+.+.|..++.+|.
T Consensus 158 llkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 66666555433211 11111 12222222 223333333333333 5899999999999999999999999999999
Q ss_pred hCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHh
Q 043758 336 ANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVA 415 (918)
Q Consensus 336 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 415 (918)
+.|.+.+.+.|..++.+ .++......++..+...|..++.......-.-....+.... .....+....
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~---------~~e~sq~~hg 299 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY---------GEEGSQLAHG 299 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh---------cccccchhhh
Confidence 99999999999888876 67777788888888888877765432211110000000000 0001111122
Q ss_pred HHHHHHHHHccC-----Ch-----HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCC
Q 043758 416 FTIYISALCKGG-----KY-----EKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGN 485 (918)
Q Consensus 416 ~~~li~~~~~~g-----~~-----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 485 (918)
+++-+..-.-.| .. .-....+++..-.|+.....+|...+. ....|+-++..++...+.....-.....
T Consensus 300 ~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~ 378 (1088)
T KOG4318|consen 300 FTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQN 378 (1088)
T ss_pred hhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcch
Confidence 222222222222 11 112222222222233333333433333 3336777777777666654311111111
Q ss_pred h----HHHHHHHHHHHHc----------CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-------C
Q 043758 486 L----DSALDILDQMEVR----------GPKP--SVAIYDAIIGHLCKEKRILEAEDMFKRMLK----AGID-------P 538 (918)
Q Consensus 486 ~----~~a~~~~~~~~~~----------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-------~ 538 (918)
+ ....+.|.+.... |+.. +....--+.....+. +...+.+-+..... ..+. +
T Consensus 379 V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~ 457 (1088)
T KOG4318|consen 379 VDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHL 457 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhH
Confidence 1 1233444444321 1111 011111112222222 33333333322221 1111 1
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHH
Q 043758 539 DEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD--GFVPNVVLYTAL 616 (918)
Q Consensus 539 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l 616 (918)
-...-+.++..|+..-+..+++..-++....- -+ ..|..||+-++...+.+.|..+.++.... .+..+..-+..+
T Consensus 458 irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 458 IRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 22345667777777777777665544443321 12 57999999999999999999999988765 445677889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhhcccccccccccccchhhhHHHHH-Hhhc-Ccccc--
Q 043758 617 INHFLRAGEFEFASRLENLMVTNQIEFD--LIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFH-KLQQ-GTLVT-- 690 (918)
Q Consensus 617 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~-- 690 (918)
.+.+.+.+...++..++.++.+.-...+ ..+.--+++.....+... ..+.+.+.+.. .+.. +|...
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe--------~Lkkl~d~lvslgl~etgPl~~vh 606 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQE--------KLKKLADILVSLGLSETGPLWMVH 606 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHH--------HHHHHHHHHHHhhhhhcccceEEE
Confidence 9999999999999999999887433222 222223333322211110 01111111110 0111 22100
Q ss_pred -------cchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChh---hHHHHHHHHHccCChhHHHHHHHHH--H-HcC--
Q 043758 691 -------RTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLY---LYNDIFLLLCGVGRMDDAYDHFQMM--K-REG-- 755 (918)
Q Consensus 691 -------~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m--~-~~~-- 755 (918)
.........+.+..-.....+.+-++...+-..++. -+.+=+..|.+.|+..+|-++.+.= . +.+
T Consensus 607 Lrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RD 686 (1088)
T KOG4318|consen 607 LRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRD 686 (1088)
T ss_pred eeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCc
Confidence 000111112222222233333333332222222211 1112223356666666665554320 0 000
Q ss_pred -------CCC---------cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh---HHHH
Q 043758 756 -------LRP---------NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLS---HVFS 816 (918)
Q Consensus 756 -------~~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---~A~~ 816 (918)
+.| +......|+..|.+.|+++.|..+|.+++ +.|...+...|...+.+..... ++..
T Consensus 687 r~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~ 763 (1088)
T KOG4318|consen 687 RDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQA 763 (1088)
T ss_pred cccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHH
Confidence 000 01112337778889999999999999887 5678888778888777666433 3333
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 043758 817 VFYSMHKR--GFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEK 879 (918)
Q Consensus 817 ~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 879 (918)
..++..+. ..+.+..-+...+...++...-+.|.+.+.+..+...+.+...+....+++.+..
T Consensus 764 e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 764 ETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 33333321 1122333333333333444555568888888888775667777778888877766
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=9e-14 Score=133.89 Aligned_cols=496 Identities=14% Similarity=0.078 Sum_probs=285.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCcc----HhhHHHHH
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTC-NTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN----MVTDLIMI 280 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~ 280 (918)
...|..-|..+....+|+..|+-+++...-|+.-.. ..+.+.+.+..++.+|+++++-.+..-...+ ....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344555666677778888888887776666665432 2334556677778888888877765421111 22344444
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHH
Q 043758 281 SNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQ 360 (918)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 360 (918)
-.+.+.|++++|...|+...+.. |+..+-..|+-++..-|+.++..+.|.+|..-...||...|.. ...+++
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~ddp~ 355 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKDDPD 355 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcCCcc
Confidence 55778899999999998877654 7776665666677778888888888888887655565543310 000000
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccC--ChHHHHHHHHH
Q 043758 361 HALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGG--KYEKAYVCLFQ 438 (918)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~ 438 (918)
+.. ..++ .-+..+.-.-+.. +.++++-.-..
T Consensus 356 ----------------~~l--------------l~ea-----------------i~nd~lk~~ek~~ka~aek~i~ta~k 388 (840)
T KOG2003|consen 356 ----------------DNL--------------LNEA-----------------IKNDHLKNMEKENKADAEKAIITAAK 388 (840)
T ss_pred ----------------hHH--------------HHHH-----------------HhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 000 0000 0011111111111 11222222222
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043758 439 LVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKE 518 (918)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 518 (918)
++.--+.|+-.. -.+..++.+..........+..+ .-..-|.++
T Consensus 389 iiapvi~~~fa~----------------------------------g~dwcle~lk~s~~~~la~dlei--~ka~~~lk~ 432 (840)
T KOG2003|consen 389 IIAPVIAPDFAA----------------------------------GCDWCLESLKASQHAELAIDLEI--NKAGELLKN 432 (840)
T ss_pred Hhccccccchhc----------------------------------ccHHHHHHHHHhhhhhhhhhhhh--hHHHHHHhc
Confidence 222112222110 00111111111111000001110 112346677
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-HHc-CCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHH
Q 043758 519 KRILEAEDMFKRMLKAGIDPDEVFFTTMING-YLQ-NRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCM 596 (918)
Q Consensus 519 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 596 (918)
|+++.|+++++-..+..-+.-...-+.+-.. |.+ .+++..|.+.-+..+..+ .-+......-.......|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 8888888777776654322222222222222 222 234555555555544321 1121111111122234567777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhh
Q 043758 597 YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGK 676 (918)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 676 (918)
.|++.......-....||.- -.+...|+.++|+..|-++..
T Consensus 512 ~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~-------------------------------------- 552 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHA-------------------------------------- 552 (840)
T ss_pred HHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHH--------------------------------------
Confidence 77777655322223333322 224556666666666555431
Q ss_pred HHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 043758 677 EMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGL 756 (918)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 756 (918)
-+..+......+...|....+...|++++-+.... +
T Consensus 553 -------------------------------------------il~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 553 -------------------------------------------ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred -------------------------------------------HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 01234555666677787788899999998777653 4
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 757 RPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHL 836 (918)
Q Consensus 757 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (918)
+.|+....-|...|-+.|+-.+|.+.+-.--.. ++.+.++..+|...|....-+++|+.+|++..- +.|+...|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 556678888889999999999999876655443 556788889999999999999999999998763 78999999988
Q ss_pred HH-HHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 837 LE-CFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 837 ~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
+. |+.+.|+++.|+.+++...+.- |.|...+.-|+++....|-
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkf-pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHHHHHhccccc
Confidence 86 7778999999999999988764 8888888888888766653
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=3.9e-13 Score=129.62 Aligned_cols=489 Identities=15% Similarity=0.088 Sum_probs=295.2
Q ss_pred cHHHHH---HHHhccCchHHHHHHHHHHHhCCCCCChhhH-HHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh--hh---
Q 043758 170 PYKSLF---YALCKNIRTVEAESFAREMESQGFYVDKLMY-TSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS--YT--- 240 (918)
Q Consensus 170 ~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~--- 240 (918)
+|..|. .-|.....+.+|...++-+.+....|+.... -.+...|.+..++.+|+..|+..... .|++ .+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence 444444 4455667788999999998887777776543 34556788899999999999887765 3332 22
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcc--------hH
Q 043758 241 -CNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVH--------CY 311 (918)
Q Consensus 241 -~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~ 311 (918)
.+.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|..+...-..+|.. .-
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 333333567899999999999998876 5777766666667778899999999999988643223222 12
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCC
Q 043758 312 TVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTG 391 (918)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (918)
..|+.--+++. .++.|.+.. +.+...+ +..-..+...-..++-.
T Consensus 356 ~~ll~eai~nd-------~lk~~ek~~-ka~aek~----------------i~ta~kiiapvi~~~fa------------ 399 (840)
T KOG2003|consen 356 DNLLNEAIKND-------HLKNMEKEN-KADAEKA----------------IITAAKIIAPVIAPDFA------------ 399 (840)
T ss_pred hHHHHHHHhhH-------HHHHHHHhh-hhhHHHH----------------HHHHHHHhccccccchh------------
Confidence 22222222211 122222111 0000000 00000000000000000
Q ss_pred ChHHHHHHHHHHHHhcCCC-CchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-HHhcCChhhHHH
Q 043758 392 DLCQEIELLLRKIVKSDPK-LANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKC-FYQVGFLEGANA 469 (918)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~ 469 (918)
....-.++.+...... .....--.-...+.++|+++.|+++++-..+..-......-+.+-.. +.+-|
T Consensus 400 ---~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg------- 469 (840)
T KOG2003|consen 400 ---AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG------- 469 (840)
T ss_pred ---cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc-------
Confidence 0000000000000000 00000112234577899999999999888754322222122222111 11112
Q ss_pred HHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 043758 470 IVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMING 549 (918)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (918)
.++..|.+.-+..+....- +......-......+|++++|.+.|++.......-....||+- -.
T Consensus 470 --------------k~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt 533 (840)
T KOG2003|consen 470 --------------KDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LT 533 (840)
T ss_pred --------------cchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-cc
Confidence 2445555555544432111 2222222223334568899999999888864322222233322 24
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043758 550 YLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFA 629 (918)
Q Consensus 550 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 629 (918)
+-..|+.++|++.|-++..- +..+..++..+...|-...+...|++++.+.... ++.|+.+...|.+.|-+.|+-..|
T Consensus 534 ~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhh
Confidence 55678888888888776532 2345667777778888888888888888776654 456788888888888888888887
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHH
Q 043758 630 SRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTV 709 (918)
Q Consensus 630 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a 709 (918)
.+.+-.--
T Consensus 612 fq~~ydsy------------------------------------------------------------------------ 619 (840)
T KOG2003|consen 612 FQCHYDSY------------------------------------------------------------------------ 619 (840)
T ss_pred hhhhhhcc------------------------------------------------------------------------
Confidence 76543321
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 043758 710 QKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHI-AAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 788 (918)
.-++-+..+...|...|....-+++|+.+|++..- +.|+..-|..++..|. +.|++.+|..+|+....
T Consensus 620 ---------ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 620 ---------RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred ---------cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22355778888888888888889999999998765 7899999988887655 78999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC
Q 043758 789 DGCVPDKTVYNTLLKGLCQAGR 810 (918)
Q Consensus 789 ~~~~p~~~~~~~l~~~~~~~g~ 810 (918)
. ++-|..++.-|++.+...|.
T Consensus 689 k-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 689 K-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred h-CccchHHHHHHHHHhccccc
Confidence 5 76788999999998887773
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=4.5e-11 Score=116.55 Aligned_cols=463 Identities=12% Similarity=0.077 Sum_probs=334.4
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCC
Q 043758 85 FDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGL 164 (918)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (918)
|+.-+..+. .+...|....+.-..++++..|.++|+++++.+ ..+...|--.+..-.+...+..|..++++... .
T Consensus 62 fEd~irrnR-~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~ 136 (677)
T KOG1915|consen 62 FEDQIRRNR-LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---I 136 (677)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---h
Confidence 444444332 255577777777788899999999999999877 55777888888888899999999999999986 3
Q ss_pred CCC-cccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHH
Q 043758 165 VPA-LHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNT 243 (918)
Q Consensus 165 ~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 243 (918)
-|. ...|...+-+--..|++..|.++|++-.+- .|+...|++.|..-.+.+..+.|..++++.+-. +|++.+|..
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wik 212 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIK 212 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHH
Confidence 343 344555555555679999999999998874 789999999999999999999999999999865 799999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC-CC-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--cchHHHHHHHHH
Q 043758 244 LIHGFFKMGLFDKGWVLYSQMSDW-GF-QPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPS--VHCYTVLIDALY 319 (918)
Q Consensus 244 ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 319 (918)
..+.-.++|+...+..+|+..++. |- ..+...+.++...=.++..++.|.-+|+-.++.- |.+ ...|......--
T Consensus 213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHH
Confidence 888888999999999999998764 20 1223455555555567788899999998877652 222 223333332222
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHH
Q 043758 320 KHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIEL 399 (918)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 399 (918)
+-|+.....+..-.= -.-
T Consensus 292 qfGd~~gIEd~Iv~K--------------------------------------------------------------Rk~ 309 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGK--------------------------------------------------------------RKF 309 (677)
T ss_pred HhcchhhhHHHHhhh--------------------------------------------------------------hhh
Confidence 334433333221000 000
Q ss_pred HHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHhcCChhhHHHHHHHhhcc
Q 043758 400 LLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLV--FTCNTLIKCFYQVGFLEGANAIVELMQDT 477 (918)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 477 (918)
-++.....+| .+-.+|-..+..-...|+.+...++|+..+.. ++|-. ..|...|-.+..-. +|+.+
T Consensus 310 qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYa-------lyeEl--- 377 (677)
T KOG1915|consen 310 QYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYA-------LYEEL--- 377 (677)
T ss_pred HHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHH-------HHHHH---
Confidence 1122222222 23367777788778889999999999998865 34422 22333333222211 11111
Q ss_pred cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcC
Q 043758 478 EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAII----GHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQN 553 (918)
Q Consensus 478 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (918)
...+.+.+.+++...++. ++....|+.-+- ....++.++..|.+++..... ..|-..+|...|..-.+.
T Consensus 378 ----e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 378 ----EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQL 450 (677)
T ss_pred ----HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHH
Confidence 335788888999888885 555556655544 444567899999999998875 489999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043758 554 RKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD-GFVPNVVLYTALINHFLRAGEFEFASRL 632 (918)
Q Consensus 554 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 632 (918)
++++.+..++++.++.+ +.+..+|......=...|+.+.|..+|+-.++. ........|.+.|+.-...|.++.|..+
T Consensus 451 ~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 99999999999999886 456778887777777899999999999999876 2334567888889988999999999999
Q ss_pred HHHHHHC
Q 043758 633 ENLMVTN 639 (918)
Q Consensus 633 ~~~~~~~ 639 (918)
|+++++.
T Consensus 530 YerlL~r 536 (677)
T KOG1915|consen 530 YERLLDR 536 (677)
T ss_pred HHHHHHh
Confidence 9999864
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=3.5e-11 Score=117.26 Aligned_cols=466 Identities=11% Similarity=0.052 Sum_probs=335.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
..++++..|..+|++++.-+. .+...|-..+..-.+...+..|..+|++++..-+..|. .|.-.+-.--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHH
Confidence 556778899999999998663 36778888888888999999999999999876434443 4444444455679999999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
++|++-.+ ..|+...|++.+..-.+...++.|..++++..-. .|++.+|--....-.++|+...|..+|++..+.
T Consensus 162 qiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 99999876 8999999999999999999999999999998865 689999999999999999999999999998864
Q ss_pred CCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHHHHHHHhcCCHHHHHH--------HHHH
Q 043758 233 GCEPDSY----TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIMISNYCREGEVDAALM--------LLNS 298 (918)
Q Consensus 233 ~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~--------~~~~ 298 (918)
-.|.. .|.+...--..+..++.|.-+|+-.+..- +.+ ...|......=-+-|+...... -++.
T Consensus 237 --~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 237 --LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 12222 34444444446778889999998888762 322 3444444444344565443332 2455
Q ss_pred HhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHH-HHHhhCCCCccHHHHHHHHHHHHhcCCCC
Q 043758 299 KVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPD-HLLSF-ILLKNCPEGTELQHALMLLCEFAKIGCGI 376 (918)
Q Consensus 299 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (918)
+...+ +-|-.+|-..++.--..|+.+...++|++...+ ++|- ...|. -.+
T Consensus 314 ~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYI-------------------------- 365 (677)
T KOG1915|consen 314 EVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYI-------------------------- 365 (677)
T ss_pred HHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHH--------------------------
Confidence 66655 567888888888888899999999999999875 4442 11110 000
Q ss_pred ChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 043758 377 DPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAF-TIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLI 455 (918)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 455 (918)
..| |..+-.-....+.+.+.++|+..++. ++...+||..+-
T Consensus 366 -------------------------------------YLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiW 407 (677)
T KOG1915|consen 366 -------------------------------------YLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIW 407 (677)
T ss_pred -------------------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHH
Confidence 001 11111223456778888888888873 566777887776
Q ss_pred HHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043758 456 KCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAG 535 (918)
Q Consensus 456 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (918)
-.+++. ..++.++..|.+++...+ |..|...++...|..-.+.+.++....++++.++.+
T Consensus 408 lmyA~f------------------eIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 408 LMYAQF------------------EIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHH------------------HHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 666543 135567788888887776 456778888888888888999999999999998875
Q ss_pred CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 043758 536 IDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS-VQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYT 614 (918)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 614 (918)
+-+..+|......-...|+.+.|..+|+-.+... +......|.+.|+-=...|.++.|..+++++++. .+...+|-
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWi 544 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWI 544 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHH
Confidence 5567788877777778899999999999888642 1112334555565556789999999999999887 34444666
Q ss_pred HHHHHHH-----HcC-----------CHHHHHHHHHHHH
Q 043758 615 ALINHFL-----RAG-----------EFEFASRLENLMV 637 (918)
Q Consensus 615 ~l~~~~~-----~~g-----------~~~~a~~~~~~~~ 637 (918)
++...-. +.+ ....|..+|++..
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 6655433 233 3456777777664
No 39
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=8.3e-09 Score=110.13 Aligned_cols=767 Identities=12% Similarity=0.100 Sum_probs=413.9
Q ss_pred hhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhh-hhhhHhcCChHH
Q 043758 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLY-QNDFVALGNIED 80 (918)
Q Consensus 2 ~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~-~~~~~~~g~~~~ 80 (918)
+|+.+|++++|.++.....++-=+-+....-|..+...+..|.+ .-.....|...|+.+.++.+= -+....+|+.+-
T Consensus 369 eLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sP--LLqYFg~LLdqGkLNk~ETLEL~RpVL~Q~RkqL 446 (1666)
T KOG0985|consen 369 ELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSP--LLQYFGTLLDQGKLNKYETLELCRPVLQQGRKQL 446 (1666)
T ss_pred HHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCc--HHHHHHHHHhcccccHHHHHHHHHHHHhhhHHHH
Confidence 57889999999999888766443344455566666666555555 334556666666554433221 112233444433
Q ss_pred HHHHHHHH-----HhCC--CCCC-----hhhH------HHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 043758 81 ALRHFDRL-----ISKN--IVPI-----KLAC------VSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGL 142 (918)
Q Consensus 81 A~~~~~~~-----~~~~--~~~~-----~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (918)
...++.+= .+.| +.|- ..+| +-.+.+|+..|.+++++-... +.|..|| |-.+++.+
T Consensus 447 lekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~k---KvGyTPd---ymflLq~l 520 (1666)
T KOG0985|consen 447 LEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAK---KVGYTPD---YMFLLQQL 520 (1666)
T ss_pred HHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHH---HcCCCcc---HHHHHHHH
Confidence 33333210 1112 1111 1122 245566777788877766544 4466776 45556666
Q ss_pred HcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHh-------------------CCCC---
Q 043758 143 CYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMES-------------------QGFY--- 200 (918)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------------------~~~~--- 200 (918)
.+ -..+.+.++...+.+. .|...-.+.+...+........+..++-...+ .++.
T Consensus 521 ~r-~sPD~~~qFa~~l~Q~---~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVAD 596 (1666)
T KOG0985|consen 521 KR-SSPDQALQFAMMLVQD---EEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVAD 596 (1666)
T ss_pred Hc-cChhHHHHHHHHhhcc---CCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHH
Confidence 55 6788888888877752 22223333333333333333333333222222 1110
Q ss_pred -------CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043758 201 -------VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG---CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQ 270 (918)
Q Consensus 201 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (918)
-+..-+..+...|-++|-+..|++-+..+.... +..+...-..++. +...-.++.+.+.++.|...++.
T Consensus 597 AILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~Nir 675 (1666)
T KOG0985|consen 597 AILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIR 675 (1666)
T ss_pred HHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHH
Confidence 011225567788888999999998877765320 0000001112222 33334678889999999988888
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH----
Q 043758 271 PNMVTDLIMISNYCREGEVDAALMLLNSKVSS-----------NLAPSVHCYTVLIDALYKHNRLMEVDELYKKML---- 335 (918)
Q Consensus 271 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---- 335 (918)
-+..+...+..-|...=..+.-.++|+....- ++..|......-|.+.++.|++.++.++.++--
T Consensus 676 qNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~Ydp 755 (1666)
T KOG0985|consen 676 QNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDP 755 (1666)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCH
Confidence 88777776766676666666677777655432 245566777778999999999998888765421
Q ss_pred -------hCCCCCChhhHHHHHhhCCCCccHHH------------HHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHH
Q 043758 336 -------ANRVAPDHLLSFILLKNCPEGTELQH------------ALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQE 396 (918)
Q Consensus 336 -------~~~~~~~~~~~~~ll~~~~~~~~~~~------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (918)
+..--+|.. .++-.|.+.+-..+ -++++-. +.+... ....+.+++....+ .+-
T Consensus 756 ErvKNfLkeAkL~Dql---PLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQ--kvNps~--~p~VvG~LLD~dC~-E~~ 827 (1666)
T KOG0985|consen 756 ERVKNFLKEAKLTDQL---PLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQ--KVNPSR--TPQVVGALLDVDCS-EDF 827 (1666)
T ss_pred HHHHHHHHhccccccC---ceEEEecccccHHHHHHHHHHhhHHHHHHHHHh--hcCCcc--cchhhhhhhcCCCc-HHH
Confidence 100001111 12223333332221 1111111 111111 11122233322211 233
Q ss_pred HHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhh-
Q 043758 397 IELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQ- 475 (918)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~- 475 (918)
...++-.+...-+ -..++.-.-+.++..--+.+++.....| ..|..+++.+...|..++..-+-. +..-.
T Consensus 828 ik~Li~~v~gq~~------~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~f--LkeN~y 898 (1666)
T KOG0985|consen 828 IKNLILSVRGQFP------VDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERF--LKENPY 898 (1666)
T ss_pred HHHHHHHHhccCC------hHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHh--cccCCc
Confidence 3333333333222 3456666777888888888888888888 578889999988887665432210 00000
Q ss_pred ----cccCccccCChHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHCCC
Q 043758 476 ----DTEGNCKWGNLDSALDILDQMEV----RGPKPSVAIYDAIIGHLCKEKRILEA-----------EDMFKRMLKAGI 536 (918)
Q Consensus 476 ----~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a-----------~~~~~~~~~~~~ 536 (918)
-..-||...++.-|.-.+++-.- -++...-..|-...+.+.+..+.+.= ..+.++..+.++
T Consensus 899 YDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal 978 (1666)
T KOG0985|consen 899 YDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTAL 978 (1666)
T ss_pred chhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcC
Confidence 00222322222222211110000 00011112233334444444443322 233444444332
Q ss_pred --CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 043758 537 --DPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSV--QPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVL 612 (918)
Q Consensus 537 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 612 (918)
..|+.-.+..+.++...+-+.+-+++++++.-.+- .-+...-+.|+-...+ -+...+.++.+++-.-+ .|+
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~--- 1053 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD--- 1053 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh---
Confidence 23555566677888888888999999988874321 1111122333333333 35567777777775443 233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccc
Q 043758 613 YTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRT 692 (918)
Q Consensus 613 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (918)
+...+...+-+++|..+|+..- .+......|+.-.
T Consensus 1054 ---ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i------------------------------------- 1088 (1666)
T KOG0985|consen 1054 ---IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENI------------------------------------- 1088 (1666)
T ss_pred ---HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh-------------------------------------
Confidence 2344556667888888888753 2222333333221
Q ss_pred hhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 043758 693 KSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIA 772 (918)
Q Consensus 693 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 772 (918)
++++.|.+.-++.. .+..|+.+..+-.+.|.+.+|++.|-+. -|...|.-+++...+
T Consensus 1089 -----------~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~ 1145 (1666)
T KOG0985|consen 1089 -----------GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR 1145 (1666)
T ss_pred -----------hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh
Confidence 44455555544333 4567888888888888888887766432 244567778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 043758 773 AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNM 852 (918)
Q Consensus 773 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 852 (918)
.|.+++-..++.-..+..-.|.+. ..|+-+|++.+++.+-.+++ ..|+......+..-|+..|.++.|.-+
T Consensus 1146 ~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1146 TGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred cCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 888888887777666655555544 46777888887776665544 457777777777777777777766555
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 043758 853 FKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLD 889 (918)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 889 (918)
+... +.|..|+..+...|.+..|.+--+
T Consensus 1217 y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1217 YSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5532 336667777777777777665443
No 40
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=5.6e-09 Score=106.29 Aligned_cols=611 Identities=12% Similarity=0.100 Sum_probs=333.7
Q ss_pred HHHHHHHHHhccCChhhHHH-H--HHHHHHcCCCcCcccHHHHHHH----HHHcCCchhHHhhhhhhhHhcCChHHHHHH
Q 043758 12 AQQVIQRLIANSASLSDALS-A--ADFAAVRGMRFDSGSYSALMKK----LIKFGQSQSALLLYQNDFVALGNIEDALRH 84 (918)
Q Consensus 12 A~~~~~~~~~~~~~~~~a~~-~--~~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~ 84 (918)
-..++.++++..|..-..-. . .++....+..|+..+|..+-++ +....+-...+..|.+.+.++|++..-...
T Consensus 45 ~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~t 124 (835)
T KOG2047|consen 45 RNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRT 124 (835)
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHH
Confidence 34567777776665322111 1 1344455667777677665543 344445667777788888999999999999
Q ss_pred HHHHHhCC-CCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC-
Q 043758 85 FDRLISKN-IVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK- 162 (918)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 162 (918)
|++++..- +......|...++-....+-++-++.+|++.+... +..-+..+..++..+++++|.+.+..+..+.
T Consensus 125 fdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~ 200 (835)
T KOG2047|consen 125 FDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDE 200 (835)
T ss_pred HHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchh
Confidence 99887653 33445578888887788888899999999988553 3346777888899999999999988876421
Q ss_pred ----CCCCCcccHHHHHHHHhccCchH---HHHHHHHHHHhCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 043758 163 ----GLVPALHPYKSLFYALCKNIRTV---EAESFAREMESQGFYVD--KLMYTSLINGYCSNRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 163 ----~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (918)
..+.+-..|..+-....+.-+.. ....++..+... -+| ...|++|...|++.|.+++|.++|++..+.
T Consensus 201 f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~- 277 (835)
T KOG2047|consen 201 FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT- 277 (835)
T ss_pred hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 12334456666666666554332 233444444433 234 346899999999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----------
Q 043758 234 CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN---------- 303 (918)
Q Consensus 234 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------- 303 (918)
..++..|..+.++|+.-....-+..+ +...+.+..+. ..-+++-...-|+.+....
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~e------------d~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEE------------DDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChh------------hhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 34566777777777643221111111 10001111111 0112222233333333221
Q ss_pred -CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhH
Q 043758 304 -LAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARS 382 (918)
Q Consensus 304 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (918)
-+.++..|..-+.. ..|+..+....|.+..+. +.|...
T Consensus 344 Qn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka-------------------------------------- 382 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKA-------------------------------------- 382 (835)
T ss_pred cCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccC--------------------------------------
Confidence 13344444433332 245555666666555543 222211
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 043758 383 ISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVG 462 (918)
Q Consensus 383 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 462 (918)
+......|..+.+.|-..|+++.|..+|++..+-.. .+...|...++.-+
T Consensus 383 --------------------------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 383 --------------------------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWA 432 (835)
T ss_pred --------------------------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHH
Confidence 001114567777788888888888888887765332 22222233332222
Q ss_pred ChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcC-----------------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043758 463 FLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRG-----------------PKPSVAIYDAIIGHLCKEKRILEAE 525 (918)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~a~ 525 (918)
+.+ .+..+++.|+.+++.....- +..+..+|...++..-..|-++...
T Consensus 433 emE---------------lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 433 EME---------------LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred HHH---------------HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 111 12233444444444333210 0114455666666666667777777
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHh---cCChhHHHHHHHHH
Q 043758 526 DMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGS-YPYTALISGLVK---KGMVDLGCMYLDRM 601 (918)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~ 601 (918)
.+|+++.+..+. ++.........+-.+.-++++.+++++-+..-..|+. ..|+..+..+.+ ...++.|..+|++.
T Consensus 498 ~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 498 AVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 777777765432 2222222222233445566777777665543223333 345555444433 23467777777777
Q ss_pred HhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHH
Q 043758 602 LADGFVPNVV--LYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEML 679 (918)
Q Consensus 602 ~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (918)
++ |.+|... .|-.....=.+.|-...|+.++++... ++.+..
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~---------------------------------- 620 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQ---------------------------------- 620 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHH----------------------------------
Confidence 76 4443322 122222222344555666666666432 111110
Q ss_pred HHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 043758 680 FHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN 759 (918)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 759 (918)
....||..|.--+..=-+..-..+|++.++. -||
T Consensus 621 --------------------------------------------~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~ 654 (835)
T KOG2047|consen 621 --------------------------------------------RLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPD 654 (835)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CCh
Confidence 1134444443333332344445566666663 455
Q ss_pred HHhHHHH---HHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChh
Q 043758 760 QVTFCIL---INGHIAAGEIDQAIGLFNQMNAD-GCVPDKTVYNTLLKGLCQAGRLS 812 (918)
Q Consensus 760 ~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~ 812 (918)
...-... ...-.+.|.++.|..++.--.+- ....+...|..-=.--.+.|+-+
T Consensus 655 ~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 655 SKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 5433222 23345789999999988877665 33335667777666677888833
No 41
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-09 Score=113.63 Aligned_cols=398 Identities=12% Similarity=0.027 Sum_probs=236.1
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLI-KCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDI 492 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 492 (918)
..|..+...+...|.-..|+.+++......-.|+..+...++ ..|.. +.+.++++++.
T Consensus 358 e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e---------------------~l~~~eegldY 416 (799)
T KOG4162|consen 358 ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIE---------------------RLKLVEEGLDY 416 (799)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHh---------------------chhhhhhHHHH
Confidence 557777778888888888888888766543234433333333 33322 22344444444
Q ss_pred HHHHHHc--C--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChH
Q 043758 493 LDQMEVR--G--PKPSVAIYDAIIGHLCKE-----------KRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPI 557 (918)
Q Consensus 493 ~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 557 (918)
-.++... + -......|-.+.-+|... ....++++.+++..+.+ +.|+.....+.--|+..++.+
T Consensus 417 A~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~ 495 (799)
T KOG4162|consen 417 AQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLT 495 (799)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHH
Confidence 4444431 1 111334444444444432 12456677777777654 223333333344566677888
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 558 EACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...+. +..|......-+..-...++.+++..+...+.
T Consensus 496 sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 496 SALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence 88888888887754566777777777778888888888888877664 12232222333333344677777776666554
Q ss_pred HCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHH
Q 043758 638 TNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVK 717 (918)
Q Consensus 638 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 717 (918)
.. +-.. . .....++-....+....+.
T Consensus 575 ~~---------------we~~-------------------------~--------------~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 575 AL---------------WEAE-------------------------Y--------------GVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred HH---------------HHhh-------------------------h--------------hHhhhhhhhhhhhhhcccc
Confidence 20 0000 0 0000011111111111111
Q ss_pred h--cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH--------hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 718 D--IEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV--------TFCILINGHIAAGEIDQAIGLFNQMN 787 (918)
Q Consensus 718 ~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------~~~~li~~~~~~g~~~~A~~~~~~~~ 787 (918)
- ......+.++..+..... -+.+.+..-.. +....+.|... .|......+.+.++.++|...+.+..
T Consensus 601 la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVA--SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred cCcccccccchhhHHHHHHHH--hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 0 011112233333332222 11111110000 22222233222 34455567788899999998888777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChhhHHH--HHHHHHhCCCCCC
Q 043758 788 ADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK-ATYEHLLECFCANCLSIPAFN--MFKEMIVHDHVPC 864 (918)
Q Consensus 788 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~~~ 864 (918)
.. .......|......+...|.+++|.+.|..... +.|+. ....++..++.+.|+..-|.. ++..+.+.+ |.+
T Consensus 678 ~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n 753 (799)
T KOG4162|consen 678 KI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLN 753 (799)
T ss_pred hc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCC
Confidence 64 333557777777888899999999999998875 66755 478888889999998888877 999999998 999
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 865 LSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 865 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
+++|+.++.++.+.|+.++|.+.|....+..
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999999999999999999999999887764
No 42
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.5e-10 Score=108.56 Aligned_cols=456 Identities=13% Similarity=0.045 Sum_probs=247.0
Q ss_pred HHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCc
Q 043758 104 LRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIR 183 (918)
Q Consensus 104 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 183 (918)
+.-+....++..|+.+++.-...+-.....+-..+...+.+.|++++|...+.-+.. .-.++...+..|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHHHHH
Confidence 445555667777777776655433222212223334445566777777777766654 234445555555555555566
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043758 184 TVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQ 263 (918)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 263 (918)
+.+|..+.....+ ++..-..|.....+.|+-++-..+-+.+... ...-.+|.+.....-.+.+|++++..
T Consensus 107 Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6666665443322 2333334444444555555555444443321 11222233333333356666666666
Q ss_pred HHhCCCCccHhhHHH-HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 043758 264 MSDWGFQPNMVTDLI-MISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPD 342 (918)
Q Consensus 264 ~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 342 (918)
++..+ |+-...|. +.-+|.+..-++-+.+++.--.+.- +.++.+.|.......+.=+-..|.+-.+.+...+-..
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 65442 22222222 2233455555566666655544432 3334444544444444333333333333333321100
Q ss_pred hhhHHH-HHh-hCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHH
Q 043758 343 HLLSFI-LLK-NCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYI 420 (918)
Q Consensus 343 ~~~~~~-ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 420 (918)
+.+.. +++ .+.--.. .+.|.+++-.+...-| .+...++
T Consensus 253 -~~f~~~l~rHNLVvFrn-----------------------------------gEgALqVLP~L~~~IP----EARlNL~ 292 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRN-----------------------------------GEGALQVLPSLMKHIP----EARLNLI 292 (557)
T ss_pred -chhHHHHHHcCeEEEeC-----------------------------------CccHHHhchHHHhhCh----Hhhhhhe
Confidence 00100 000 0000011 2445555555554444 5566778
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcC
Q 043758 421 SALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRG 500 (918)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 500 (918)
-.|.++++..+|..+.+++. +.++.-|..-.-.++..|+--. ......-|.+.|.-.-+.+
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~g---------------SreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETG---------------SREHLKIAQQFFQLVGESA 353 (557)
T ss_pred eeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcC---------------cHHHHHHHHHHHHHhcccc
Confidence 88999999999999988763 2222222222222344443221 2224455666666665555
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhH-
Q 043758 501 PKPSVA-IYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPY- 578 (918)
Q Consensus 501 ~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~- 578 (918)
...|+. --.++.+++.-..++++.+..++.+...= ..|...--.+.++++..|++.+|+++|-.+....++ |..+|
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~ 431 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYK 431 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHH
Confidence 544433 23455666666778999999999888753 233333345778999999999999999888765444 44555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043758 579 TALISGLVKKGMVDLGCMYLDRMLADGFVPNV-VLYTALINHFLRAGEFEFASRLENLMVTN 639 (918)
Q Consensus 579 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 639 (918)
..|.++|.+.++++.|+.++-.+.. +.+. .....+.+-|.+++++--|.+.|+.+...
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 4566788999999999887755432 2233 34455667789999998888888888753
No 43
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.55 E-value=4.7e-08 Score=99.77 Aligned_cols=180 Identities=8% Similarity=-0.038 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043758 133 WSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLING 212 (918)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 212 (918)
..|-..+..+..+|++..-+..|+......+..-....|...+...-..+-++-+.+++++..+. ++..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 46777778888899999999999988764444445567777787777888888999999999887 66667778888
Q ss_pred HhcCCChHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCcc--HhhHHHHHH
Q 043758 213 YCSNRNMKMAMRLFFRMLKTG------CEPDSYTCNTLIHGFFKMGLFD---KGWVLYSQMSDWGFQPN--MVTDLIMIS 281 (918)
Q Consensus 213 ~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~~ 281 (918)
++..+++++|-+.+...+... .+.+-..|..+....+++.+.- ....+++.+..+ -+| ...|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 888999999988888776321 1233345666666555544332 234555655543 334 457888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 282 NYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 282 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
.|.+.|.+++|..+|++..+.- .++.-|+.+.++|++
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 9999999999999998877542 344455666666654
No 44
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.55 E-value=1e-08 Score=109.73 Aligned_cols=678 Identities=11% Similarity=-0.020 Sum_probs=367.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.-+.+...|...|-+.++.++. =..+|..+...|+.-.+...|...|+++.+.+ ..+..........|++..+++.|.
T Consensus 469 ~~rK~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHH
Confidence 5555688899999888887744 23488889999988889999999999999887 668888999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
.+.-...++.....-...|..+.-.|.+.++..++..-|+...+..+. |...|..+..+|...|.+..|+++|.+....
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 985444331111111222333444577889999999999999988666 8889999999999999999999999998765
Q ss_pred CCCCChhhHHHHH--HHHHhcCChhHHHHHHHHHHhCC------CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh---
Q 043758 233 GCEPDSYTCNTLI--HGFFKMGLFDKGWVLYSQMSDWG------FQPNMVTDLIMISNYCREGEVDAALMLLNSKVS--- 301 (918)
Q Consensus 233 ~~~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 301 (918)
.|+. +|...- ...+..|.+.++...++.....- ...-..++..+...+...|=..+|..+++..++
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4543 333322 23457899999998888775431 111122333333333333444444444443332
Q ss_pred ----CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCC
Q 043758 302 ----SNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGID 377 (918)
Q Consensus 302 ----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (918)
.....+...|-.+. .|..+|-... .. .|+......+..-....+ ...+
T Consensus 703 ~~l~h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~----------------~l~~ 754 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTG----------------ALKK 754 (1238)
T ss_pred HHHHHhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcc----------------cCcc
Confidence 21112222232222 2333333332 11 233222222222111111 1111
Q ss_pred hhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHc--------cCChHHHHHHHHHHHHCCCCCCcc
Q 043758 378 PLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCK--------GGKYEKAYVCLFQLVNFGYRPLVF 449 (918)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~ 449 (918)
..+..+...+. ...+.-+. ....|..++..|.+ ..+...|+..++..++.. .-+..
T Consensus 755 ~d~l~Lg~~c~---------~~hlsl~~------~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~ 818 (1238)
T KOG1127|consen 755 NDLLFLGYECG---------IAHLSLAI------HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEG 818 (1238)
T ss_pred hhHHHHHHHHh---------hHHHHHhh------ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHH
Confidence 11000000000 00000000 01334444333332 123346777777766542 22334
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043758 450 TCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFK 529 (918)
Q Consensus 450 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 529 (918)
+|+.+- ..... |++.-+...|-+.....+ .+..+|..+...+.+..+++-|...|.
T Consensus 819 ~WnaLG-Vlsg~----------------------gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 819 LWNALG-VLSGI----------------------GNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred HHHHHH-Hhhcc----------------------chhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHH
Confidence 444443 33322 355555556655555433 366778878878888889999999998
Q ss_pred HHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH----hCCCCCCchhHHHHHHHHHhcCChhHHHH---------
Q 043758 530 RMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMK----ENSVQPGSYPYTALISGLVKKGMVDLGCM--------- 596 (918)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--------- 596 (918)
..+... +.+...|-.....--..|+.-++..+|..-- ..|--|+..-+-....-....|+.++-+.
T Consensus 875 ~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 875 SVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 887653 3455556555545556677777777776622 12223333333333333334444443332
Q ss_pred -HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHhhhcccccccccccccchh
Q 043758 597 -YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTN-QIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDS 674 (918)
Q Consensus 597 -~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 674 (918)
.++.... +.+.+...|.+......+.+.+..|.....+.+.- ..+-|..+|+....
T Consensus 954 ~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~--------------------- 1011 (1238)
T KOG1127|consen 954 LALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP--------------------- 1011 (1238)
T ss_pred HHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh---------------------
Confidence 2223322 33556667777777777777777777777665420 01122223332222
Q ss_pred hhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH--HccCChhHHHHHHHHHH
Q 043758 675 GKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLL--CGVGRMDDAYDHFQMMK 752 (918)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~ 752 (918)
.....++..|.++.|...+... +-..--.++.... .-.++++++.+.|++..
T Consensus 1012 --------------------~~gRL~lslgefe~A~~a~~~~------~~evdEdi~gt~l~lFfkndf~~sl~~fe~aL 1065 (1238)
T KOG1127|consen 1012 --------------------DAGRLELSLGEFESAKKASWKE------WMEVDEDIRGTDLTLFFKNDFFSSLEFFEQAL 1065 (1238)
T ss_pred --------------------hhhhhhhhhcchhhHhhhhccc------chhHHHHHhhhhHHHHHHhHHHHHHHHHHHHh
Confidence 2223344456666554433221 1111001111111 22478888888888876
Q ss_pred Hc-CCCCcH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CC
Q 043758 753 RE-GLRPNQ-VTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR----GF 826 (918)
Q Consensus 753 ~~-~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~ 826 (918)
.. +-..+. +....++.+....+.-+.|...+-+.... -+|+..+.-.+--.+.-..+-.....+++++.+. .+
T Consensus 1066 sis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~ 1144 (1238)
T KOG1127|consen 1066 SISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWF 1144 (1238)
T ss_pred hhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHh
Confidence 53 112222 24455555666777888888766666554 2344444444433333333333333334444321 01
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 043758 827 VPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ 877 (918)
Q Consensus 827 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (918)
.-+......+ -+.++|+-....+.+++..-.. |.|+..|..|..-|..
T Consensus 1145 ~~~~~ll~e~--i~~~~~r~~~vk~~~qr~~h~~-P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1145 CWPPGLLKEL--IYALQGRSVAVKKQIQRAVHSN-PGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred ccChhHHHHH--HHHHhhhhHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 1112222222 2466777777778888877665 8888888888765553
No 45
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=3.5e-10 Score=106.17 Aligned_cols=158 Identities=11% Similarity=0.066 Sum_probs=102.2
Q ss_pred ChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHH
Q 043758 705 KKGTVQKIVLKVKDIEFMPN-LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLF 783 (918)
Q Consensus 705 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 783 (918)
.+.-|++.|+.+.+.+..-| +..-.++..++.-..++++++.+++.+..-=..-|...+| +..+++..|++.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHH
Confidence 34456666666665555444 3455666666666778888888888887753444444444 677888889999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccCChhhHHHHHHHHHhCCCC
Q 043758 784 NQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEH-LLECFCANCLSIPAFNMFKEMIVHDHV 862 (918)
Q Consensus 784 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~ 862 (918)
-.+....++-+......+.++|.++++.+-|..++-.+- -+.+..++-. +..-|.+.+.+--|.+.+..+...+
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD-- 491 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD-- 491 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--
Confidence 777654444333333456678888888888887776552 2223334333 4457788888888888888776654
Q ss_pred CCcccH
Q 043758 863 PCLSNC 868 (918)
Q Consensus 863 ~~~~~~ 868 (918)
|+++.|
T Consensus 492 P~pEnW 497 (557)
T KOG3785|consen 492 PTPENW 497 (557)
T ss_pred CCcccc
Confidence 444433
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=3.3e-14 Score=143.11 Aligned_cols=258 Identities=17% Similarity=0.109 Sum_probs=100.2
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC
Q 043758 69 QNDFVALGNIEDALRHFDRLISKN-IVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF 147 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 147 (918)
..++.+.|++++|+++++...... +..++..|..+.......+++++|+..|+++...+ +.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 566677788888888886554443 23355566566666667788888888888887765 3355666666666 57888
Q ss_pred hhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCChHHHHHHH
Q 043758 148 LDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQG-FYVDKLMYTSLINGYCSNRNMKMAMRLF 226 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 226 (918)
+++|.++++...+ ..++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..+
T Consensus 93 ~~~A~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYE---RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccc---cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888877655 12455566667777778888888888888876532 2346667778888888888888888888
Q ss_pred HHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 043758 227 FRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLA 305 (918)
Q Consensus 227 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 305 (918)
++..+. .|+ ....+.++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|..+|+.....+ +
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 888876 454 5567777777888888888888887776654 5566677778888888888888888888877755 4
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 306 PSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 306 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
.|......+..++...|+.++|.++.++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 566667777888888888888888877654
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=2.3e-14 Score=144.24 Aligned_cols=167 Identities=13% Similarity=0.037 Sum_probs=103.0
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHcC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 043758 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREG-LRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNT 800 (918)
Q Consensus 723 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 800 (918)
+++..+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|++.+++.++. .| |......
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~ 185 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNA 185 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHH
Confidence 345556667777777888888888888876432 2445667777777888888888888888888874 45 4677778
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 801 LLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
++..+...|+.+++.++++...+.. +.++..+..+..++...|++++|+..+++..... |.|+.....++.++...|+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccc
Confidence 8888888888888888888777542 4455677778888888888888988888888766 7788888899999999999
Q ss_pred HHHHHHHHHHHHh
Q 043758 881 FHEAQIVLDVMHK 893 (918)
Q Consensus 881 ~~~A~~~~~~~~~ 893 (918)
.++|.+++.++.+
T Consensus 264 ~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 264 KDEALRLRRQALR 276 (280)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 9999888877644
No 48
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.53 E-value=3.4e-08 Score=101.90 Aligned_cols=194 Identities=15% Similarity=0.096 Sum_probs=125.8
Q ss_pred HHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC
Q 043758 103 ILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNI 182 (918)
Q Consensus 103 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 182 (918)
.+.+-.....+..|+.+++.+.+..+ -...|..+..-|+..|+++.|.++|-+.- .++--+.+|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccc
Confidence 34444556678888888887776542 33456677778888888888888876642 3455677788888
Q ss_pred chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043758 183 RTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYS 262 (918)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 262 (918)
+++.|.++-++... +......|-+-..-.-.+|++.+|.++|-.+. .|+. .|..|-+.|..+..+++.+
T Consensus 806 kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 88888877666543 23345556666666677788888887775543 3443 3556777777777777666
Q ss_pred HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 043758 263 QMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELY 331 (918)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (918)
+-.-. .=..|...+..-|-..|++..|+..|-+.. -|.+-+..|-.++.+++|-++-
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 54211 112345556666777788888877774433 2555666777777777666553
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=9.7e-12 Score=131.87 Aligned_cols=260 Identities=13% Similarity=-0.001 Sum_probs=177.1
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 149 (918)
++....|+++.|...|.++.+..+.+...........+...|++++|...++.+.+.. |.+..++..+...+.+.|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 3446667777777778887766544333344445777888899999999999988886 556678888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccHH-HHHHHH---hccCchHHHHHHHHHHHhCCCC---CChhhHHHHHHHHhcCCChHHH
Q 043758 150 EVLEVVNIMRKKKGLVPALHPYK-SLFYAL---CKNIRTVEAESFAREMESQGFY---VDKLMYTSLINGYCSNRNMKMA 222 (918)
Q Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 222 (918)
.|.+.++.+.+ .+.. +...+. ....++ ...+..++....+..+.+..+. .++..+..+...+...|+.++|
T Consensus 205 ~a~~~l~~l~k-~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 205 ALDDIIDNMAK-AGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 99999999987 4322 222221 111111 2222223333455555444221 2677888888899999999999
Q ss_pred HHHHHHHHhcCCCCChhhH-HHHHH--HHHhcCChhHHHHHHHHHHhCCCCccH--hhHHHHHHHHHhcCCHHHHHHHHH
Q 043758 223 MRLFFRMLKTGCEPDSYTC-NTLIH--GFFKMGLFDKGWVLYSQMSDWGFQPNM--VTDLIMISNYCREGEVDAALMLLN 297 (918)
Q Consensus 223 ~~~~~~m~~~~~~p~~~~~-~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 297 (918)
.+++++..+. .||.... ..++. .....++.+.+.+.++...+.. +.|+ ....++...+.+.|++++|.+.|+
T Consensus 283 ~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 283 QEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999998876 3444321 01222 2234567777888888877663 3444 566688888899999999999999
Q ss_pred HHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 298 SKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 298 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
........|+...+..+...+.+.|+.++|.+++++..
T Consensus 360 ~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 360 NVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43332235788888888999999999999999988754
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=2.2e-11 Score=128.23 Aligned_cols=255 Identities=12% Similarity=0.040 Sum_probs=188.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|+++.|.+.|.++.+..+.+...........+...|++++|...++++.+.. |-+...+..+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 6778888888888888876544332232344677888899999999999998876 567788888899999999999999
Q ss_pred HHHHHHHhcCCCCCCc------ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 043758 153 EVVNIMRKKKGLVPAL------HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLF 226 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 226 (918)
+++..+.+.....+.. .+|..++.......+.+...++++.+.+.- +.++.....+...+...|+.++|..++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999998732222221 123333333334445566666666665432 237778888999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 043758 227 FRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAP 306 (918)
Q Consensus 227 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 306 (918)
++..+. +|+... .++.+....++.+++.+..+...+.. +.|+..+..+...+.+.+++++|.+.|+...+. .|
T Consensus 287 ~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P 359 (398)
T PRK10747 287 LDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP 359 (398)
T ss_pred HHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 888874 455422 22333445688889999998888764 556777888889999999999999999998876 48
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 307 SVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+...+..+...+.+.|+.++|.+++++-..
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888899999999999999999987654
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=1.2e-10 Score=122.63 Aligned_cols=290 Identities=11% Similarity=0.046 Sum_probs=176.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHH--HHHHHHHhcCChhHH
Q 043758 518 EKRILEAEDMFKRMLKAGIDPDEVF-FTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYT--ALISGLVKKGMVDLG 594 (918)
Q Consensus 518 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 594 (918)
.|+++.|++.+....+.. +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588998888887766542 22333 333344557889999999999998875 45554333 335667788999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchh
Q 043758 595 CMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDS 674 (918)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 674 (918)
...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++...-..-..++...
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l---------------- 235 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL---------------- 235 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------------
Confidence 99999988875 5567788888899999999999999999998776543221110000110000
Q ss_pred hhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 043758 675 GKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE 754 (918)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 754 (918)
........+.+...+.++.+.+ ..+.++.....+...+...|+.++|.+++++..+.
T Consensus 236 ----------------------~~~~~~~~~~~~l~~~w~~lp~-~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 236 ----------------------MDQAMADQGSEGLKRWWKNQSR-KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred ----------------------HHHHHHhcCHHHHHHHHHhCCH-HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 0000001223334444444331 12345566666667777777777777777666652
Q ss_pred CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 043758 755 GLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYE 834 (918)
Q Consensus 755 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 834 (918)
.||... .++.+....++.+++++..+.+.+. .+-|+..+..+...|.+.|++++|.+.|+...+ ..|+..++.
T Consensus 293 --~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~ 365 (398)
T PRK10747 293 --QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYA 365 (398)
T ss_pred --CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHH
Confidence 344321 1233333456677777776666654 112445566666667777777777777777664 456666666
Q ss_pred HHHHHHHccCChhhHHHHHHHHHh
Q 043758 835 HLLECFCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 835 ~l~~~~~~~~~~~~A~~~~~~~~~ 858 (918)
.+..++.+.|+.++|...+++.+.
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666776666666666543
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.9e-10 Score=110.07 Aligned_cols=352 Identities=13% Similarity=0.003 Sum_probs=244.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHH
Q 043758 500 GPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYT 579 (918)
Q Consensus 500 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 579 (918)
+...|...+-.....+.+.|..+.|++.|......- |-.=..|..+...+ .+.+. ...... +.+.|...+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHH
Confidence 444566666666667778899999999998887642 22323333333222 22222 222221 2233332222
Q ss_pred --HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CccHHHHHHHHHHH
Q 043758 580 --ALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI--EFDLIAYIALVSGV 655 (918)
Q Consensus 580 --~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~ 655 (918)
.+..++-.....+++..-.+.....|++.+...-+....+.....|+++|+.+|+++.++.. --|..+|..++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 23455666678888988888888889888877777777777888899999999999988632 12566666555432
Q ss_pred hhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChh-HHHHHHHHHHhcCCCCChhhHHHHHHH
Q 043758 656 CRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKG-TVQKIVLKVKDIEFMPNLYLYNDIFLL 734 (918)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~ 734 (918)
... .++. .|+.+++ -.+-.+.|...+.+.
T Consensus 310 ~~~---------------------------------------------skLs~LA~~v~~-----idKyR~ETCCiIaNY 339 (559)
T KOG1155|consen 310 NDK---------------------------------------------SKLSYLAQNVSN-----IDKYRPETCCIIANY 339 (559)
T ss_pred hhh---------------------------------------------HHHHHHHHHHHH-----hccCCccceeeehhH
Confidence 110 0000 1111111 113355677788888
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 043758 735 LCGVGRMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSH 813 (918)
Q Consensus 735 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 813 (918)
|+-.++.++|+..|++.++ +.|... .|+.+..-|....+...|++-++.+++- .+.|-..|..+..+|.-.+...=
T Consensus 340 YSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred HHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHH
Confidence 9989999999999999988 456544 5666777788999999999999999884 22367899999999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 814 VFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMH 892 (918)
Q Consensus 814 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 892 (918)
|+-+|++..+ ++| |...|.+|..+|.+.++.++|++-+++....+ ..+..++..|+..|.+.++.++|...+++-.
T Consensus 417 aLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 417 ALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999886 566 77789999999999999999999999999877 5577899999999999999999999988876
Q ss_pred hC----C-CCC-CcccchhhhcccccccCC
Q 043758 893 KR----G-RLP-CTSTRGFWRKHFIGKEKF 916 (918)
Q Consensus 893 ~~----~-~~~-~~~~~~~~~~~~~~~~~~ 916 (918)
+. | +.| .....-++.+++.+..++
T Consensus 494 ~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 494 EVSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence 63 2 222 122344555665555443
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1e-10 Score=114.80 Aligned_cols=184 Identities=16% Similarity=0.161 Sum_probs=146.3
Q ss_pred hCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHHH
Q 043758 702 SNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ-VTFCILINGHIAAGEIDQAI 780 (918)
Q Consensus 702 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~ 780 (918)
...+.++..+.|.+....+ +.++.+|....+.+.-.+++++|..-|++.++ +.|+. ..|.-+.-+..+.+.++++.
T Consensus 372 d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m 448 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESM 448 (606)
T ss_pred hhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665443 45778888888888888999999999999988 45654 46666666677899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-------HH--HHHHHHHHHHccCChhhHHH
Q 043758 781 GLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK-------KA--TYEHLLECFCANCLSIPAFN 851 (918)
Q Consensus 781 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~--~~~~l~~~~~~~~~~~~A~~ 851 (918)
..|++.+.. ++--+++|+.....+...+++++|.+.++...+ +.|+ .. +-..++- +...+++..|..
T Consensus 449 ~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 449 KTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAEN 524 (606)
T ss_pred HHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhh-hchhhhHHHHHH
Confidence 999999886 655679999999999999999999999999875 3443 22 2222332 345589999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 852 MFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
++.++++.+ |....++..|+....+.|+.++|.++|++...
T Consensus 525 Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 525 LLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999988 88888999999999999999999999998654
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.1e-09 Score=107.07 Aligned_cols=305 Identities=14% Similarity=0.053 Sum_probs=204.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCcHHHHHHHHHHHHcCCChHHHHHH
Q 043758 485 NLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGI--DPDEVFFTTMINGYLQNRKPIEACQL 562 (918)
Q Consensus 485 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 562 (918)
..+++..-.+.....|++.+...-+....+.-...+++.|+.+|+++.+... --|..+|+.++..-....+ +..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls~ 317 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LSY 317 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HHH
Confidence 4456666666666666666666666666666667777777777777776520 0144555555433222111 111
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043758 563 FEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIE 642 (918)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 642 (918)
+.+-.-.--+-.+.|...+.+-|.-.++.++|..+|++..+.+ +.....|..+.+-|....+...|++-|++.++-
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--- 393 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--- 393 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---
Confidence 1111110002233455566666777777777777777777664 345566777777777777777777777776531
Q ss_pred ccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCC
Q 043758 643 FDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFM 722 (918)
Q Consensus 643 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 722 (918)
.+
T Consensus 394 ------------------------------------------------------------------------------~p 395 (559)
T KOG1155|consen 394 ------------------------------------------------------------------------------NP 395 (559)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 13
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTL 801 (918)
Q Consensus 723 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 801 (918)
.|-..|..|.++|.-.+.+.-|+-.|++... ++| |...|.+|..+|.+.++.++|+..|......|-. +...+..+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~L 472 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRL 472 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHH
Confidence 4677899999999999999999999999988 455 5679999999999999999999999999886543 66888999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC----CCCCCH--HHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHKR----GFVPKK--ATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL 875 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (918)
.+.|-+.++.++|...+++.++. |...+. ....-|..-+.+.+++++|..........
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~---------------- 536 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG---------------- 536 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC----------------
Confidence 99999999999999998887642 322222 22222445677788888887766655432
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 043758 876 CQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 876 ~~~g~~~~A~~~~~~~~~~~~ 896 (918)
....++|..++.++++..-
T Consensus 537 --~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 537 --ETECEEAKALLREIRKIQA 555 (559)
T ss_pred --CchHHHHHHHHHHHHHhcC
Confidence 2345788888888776543
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=7.3e-11 Score=125.22 Aligned_cols=300 Identities=10% Similarity=-0.025 Sum_probs=217.9
Q ss_pred hHHhhhhhhh--HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcch--hHHHH
Q 043758 63 SALLLYQNDF--VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCW--SYNVL 138 (918)
Q Consensus 63 ~a~~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l 138 (918)
.+.....+.+ ...|+++.|.+.+....+..+.| ...+-....+..+.|+++.|...+.++.+.. |+.. .....
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~ 159 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHH
Confidence 3444343333 88999999999999988765432 3344566777888899999999999987653 4432 33345
Q ss_pred HHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---h
Q 043758 139 IDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYT-SLINGY---C 214 (918)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~ 214 (918)
...+...|+++.|.+.++.+.+ . .|-+......+..++.+.|++++|...+..+.+.+.. +...+. ....++ .
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~-~-~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLE-M-APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence 7888889999999999999987 2 2445567788889999999999999999999998765 433332 111222 3
Q ss_pred cCCChHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhh---HHHHHHHHHhcCC
Q 043758 215 SNRNMKMAMRLFFRMLKTGC---EPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVT---DLIMISNYCREGE 288 (918)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 288 (918)
..+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCC
Confidence 33344444456666555421 1266788888899999999999999999999874 33331 1222222344578
Q ss_pred HHHHHHHHHHHhhCCCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHH
Q 043758 289 VDAALMLLNSKVSSNLAPSV--HCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLL 366 (918)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 366 (918)
.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+...|+.+.|.+++
T Consensus 315 ~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 315 NEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred hHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 889999998887764 3344 5567889999999999999999996555556788888888888999999999998888
Q ss_pred HHHHh
Q 043758 367 CEFAK 371 (918)
Q Consensus 367 ~~~~~ 371 (918)
++...
T Consensus 394 ~~~l~ 398 (409)
T TIGR00540 394 QDSLG 398 (409)
T ss_pred HHHHH
Confidence 76544
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=4.1e-08 Score=100.65 Aligned_cols=139 Identities=16% Similarity=0.034 Sum_probs=92.1
Q ss_pred HHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcch
Q 043758 54 KLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCW 133 (918)
Q Consensus 54 ~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 133 (918)
+|.+.+.+.+.+.+-+-.+...|+.++|....+..+..++. +.++|..+.-.+....++++|++.|..+...+ +.|..
T Consensus 33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~q 110 (700)
T KOG1156|consen 33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQ 110 (700)
T ss_pred HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHH
Confidence 33455555555555555566777777777777777776655 67788888877777888899999998888776 55666
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCC-CcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 134 SYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVP-ALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.+.-+.-.-++.|+++.....-..+.+ ..| ....|.....++--.|++..|..++++..+.
T Consensus 111 ilrDlslLQ~QmRd~~~~~~tr~~LLq---l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 111 ILRDLSLLQIQMRDYEGYLETRNQLLQ---LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776666666666777766666666554 222 2344555555555556666666666666554
No 57
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.6e-07 Score=100.60 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=80.3
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLK 803 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 803 (918)
++.-|..|...+...|.+..|...-.+. -+..+|.-+..+|...+.+.-| +|.-..+.....-+..++.
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIE 1287 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHH
Confidence 3445666777777777777776654332 2445777777777766554333 2222223334455667777
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHH-hCCCCC------CcccHHHHHHHH
Q 043758 804 GLCQAGRLSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCANCLSIPAFNMFKEMI-VHDHVP------CLSNCNWLLNIL 875 (918)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~------~~~~~~~l~~~~ 875 (918)
-|...|.+++-+.+++... |+.-... .+.-|. .++..=++++..+.++-.. +.++|. ....|.-|.-.|
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELa-iLYskykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY 1364 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGL--GLERAHMGMFTELA-ILYSKYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLY 1364 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877777654 3332222 222222 2333334444444444332 112111 134566677777
Q ss_pred HhcCCHHHHH
Q 043758 876 CQEKHFHEAQ 885 (918)
Q Consensus 876 ~~~g~~~~A~ 885 (918)
.+-..|+.|.
T Consensus 1365 ~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1365 DKYEEYDNAA 1374 (1666)
T ss_pred HhhhhhhHHH
Confidence 7766666664
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=5.7e-08 Score=99.62 Aligned_cols=231 Identities=11% Similarity=-0.020 Sum_probs=129.8
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHH
Q 043758 77 NIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVN 156 (918)
Q Consensus 77 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (918)
.+..-+...+.+++..+. ...+.....-.+...|+.++|.+....-.+.+ ..+...|..+.-.+....++++|++.|.
T Consensus 22 QYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 344444445555443222 22233333334566677777777776666554 3345566666666666677778888887
Q ss_pred HHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC-CC
Q 043758 157 IMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG-CE 235 (918)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 235 (918)
.+.+ --+.|...+.-+.-.-++.++++.....-....+..+. ....|...+.++.-.|++..|..++++..+.. ..
T Consensus 100 nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 100 NALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7765 12333445544444455667777766666666654332 45567777777777777777777777776543 23
Q ss_pred CChhhHHHHHH------HHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcc
Q 043758 236 PDSYTCNTLIH------GFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVH 309 (918)
Q Consensus 236 p~~~~~~~ll~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 309 (918)
|+...|..... ...+.|.++.|.+.+..-... +......-..-...+.+.+++++|..++..+...+ ||..
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~ 253 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNL 253 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhH
Confidence 55554433322 234556666666555543322 11111122233455667777777777777777665 5555
Q ss_pred hHHHHH
Q 043758 310 CYTVLI 315 (918)
Q Consensus 310 ~~~~ll 315 (918)
.|+..+
T Consensus 254 ~Yy~~l 259 (700)
T KOG1156|consen 254 DYYEGL 259 (700)
T ss_pred HHHHHH
Confidence 544433
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=5.7e-10 Score=109.69 Aligned_cols=221 Identities=13% Similarity=0.062 Sum_probs=116.0
Q ss_pred cCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 043758 215 SNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALM 294 (918)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 294 (918)
-.|++-.|..-|+..+.....++ ..|.-+...|....+.++.+..|......+ +-++.+|..-.+++.-.++++.|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34555555555555554422211 124444445555555555566665555544 3344455555555555555666665
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCC
Q 043758 295 LLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGC 374 (918)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 374 (918)
=|+...+.+ +-++..|-.+..+..+.++++++...|++.++. .+.-...|+.....+...++++.|.+.+........
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 555555543 334445555555555555566666666555543 222334445555555555555555555555544332
Q ss_pred CCC-----hhhhHHHh-hcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHH
Q 043758 375 GID-----PLARSISA-TLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLV 440 (918)
Q Consensus 375 ~~~-----~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 440 (918)
..+ +..+.-.+ +..........+..++++....+|..+ .+|..|...-.+.|+.++|+++|+...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 211 00011011 111122345566666666666665443 677778888888888888888887765
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.6e-10 Score=107.34 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=174.7
Q ss_pred chhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC--cccHHHHHHHHhccCchHH
Q 043758 109 AEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA--LHPYKSLFYALCKNIRTVE 186 (918)
Q Consensus 109 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~ 186 (918)
-..+.+.|+++|-+|.+.. +-+..+.-.+...|.+.|..++|+++.+.+.+..+...+ ......|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3467889999999998764 445556667888899999999999999999872222111 1233345566778899999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCChhHHHHHHH
Q 043758 187 AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY----TCNTLIHGFFKMGLFDKGWVLYS 262 (918)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~ 262 (918)
|+.+|..+.+.+.. -......|+..|-...+|++|++.-+++.+.+-.+... -|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999885332 55677889999999999999999999888765444322 35556666667788999999999
Q ss_pred HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043758 263 QMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAP 341 (918)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (918)
+..+.+ +-.+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+....+
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 988775 445566667788899999999999999999987643344567788899999999999999998887754333
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=7.7e-10 Score=102.98 Aligned_cols=290 Identities=17% Similarity=0.182 Sum_probs=197.9
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcc------hHHHHHHHHHhcCCh
Q 043758 251 MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVH------CYTVLIDALYKHNRL 324 (918)
Q Consensus 251 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~g~~ 324 (918)
+++.++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..|.|+++.+.+.+ .||.. +...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356777777777777643 33445566777778888888888888877776 34432 234566777888888
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHH
Q 043758 325 MEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKI 404 (918)
Q Consensus 325 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 404 (918)
+.|+++|..+...+..
T Consensus 124 DRAE~~f~~L~de~ef---------------------------------------------------------------- 139 (389)
T COG2956 124 DRAEDIFNQLVDEGEF---------------------------------------------------------------- 139 (389)
T ss_pred hHHHHHHHHHhcchhh----------------------------------------------------------------
Confidence 8888888887654311
Q ss_pred HhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccC
Q 043758 405 VKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWG 484 (918)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 484 (918)
-..+...++..|....+|++|+++-+++.+.+-.+...- +...||...+. +....
T Consensus 140 -------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAqfyCELAq~---------------~~~~~ 194 (389)
T COG2956 140 -------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQFYCELAQQ---------------ALASS 194 (389)
T ss_pred -------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHHHHHHHHHH---------------Hhhhh
Confidence 014456778888888899999988888887653333221 12223322211 12335
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHH
Q 043758 485 NLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFE 564 (918)
Q Consensus 485 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 564 (918)
+++.|...+.+..+.+++ .+.+--.+.+.....|+++.|.+.++.+.+.+..--..+...+..+|...|++++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777888888888877554 5566666778889999999999999999987533345677888889999999999999999
Q ss_pred HHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 043758 565 KMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRA---GEFEFASRLENLMVT 638 (918)
Q Consensus 565 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 638 (918)
.+.+.. ++...-..+........-.+.|..++.+-+.. .|+...+..+++....- |...+...+++.|+.
T Consensus 274 ~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 274 RAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 998873 44444444544444555567777766666655 78999999999876543 345566666777764
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.2e-09 Score=105.21 Aligned_cols=293 Identities=12% Similarity=0.069 Sum_probs=197.6
Q ss_pred cCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 043758 215 SNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALM 294 (918)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 294 (918)
..|+|..|+++..+-.+.+-. ....|..-..+.-..|+.+.+-+++.+..+..-.++.....+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 378888888888887765433 2345666666777888889898888888876335566667777778888889888888
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-------hHHHHHhhCCCCccHHHHHHHHH
Q 043758 295 LLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHL-------LSFILLKNCPEGTELQHALMLLC 367 (918)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~ 367 (918)
-+..+...+ +.+........++|.+.|++.....++..|.+.++-.|.. ++..+++-+...++.+.-...+.
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 888887766 5667788888899999999999999999988887655432 34444443333222222111111
Q ss_pred HHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 043758 368 EFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPL 447 (918)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 447 (918)
..+.. ...++..-..++.-+...|+.++|.++.++..+.+..|+
T Consensus 254 -----------------------------------~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 254 -----------------------------------NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred -----------------------------------hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 11110 011123445667777888888888888888887765555
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043758 448 VFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDM 527 (918)
Q Consensus 448 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 527 (918)
...++.. .+.++.+.-++..++.....+ -++..+.+|...|.+.+.+.+|.+.
T Consensus 298 ---L~~~~~~-----------------------l~~~d~~~l~k~~e~~l~~h~-~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 298 ---LCRLIPR-----------------------LRPGDPEPLIKAAEKWLKQHP-EDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred ---HHHHHhh-----------------------cCCCCchHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhHHHHHHHH
Confidence 3333322 233455555555655555533 2567778888888888888888888
Q ss_pred HHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 043758 528 FKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPG 574 (918)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 574 (918)
|+...+. .|+..+|+.+.+++.+.|++.+|.++.++....-.+|+
T Consensus 351 leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 351 LEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 8877765 67888888888888888888888888877664433443
No 63
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=2e-10 Score=117.83 Aligned_cols=219 Identities=15% Similarity=0.147 Sum_probs=158.6
Q ss_pred hcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCC-CcccHHHHHHHHhccCchHHHHH
Q 043758 111 EKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVP-ALHPYKSLFYALCKNIRTVEAES 189 (918)
Q Consensus 111 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~ 189 (918)
-+.++|+..|..+.... .-..++...+..+|...+++++|.++|+.+.+..+... +...|.+.+--+.+ .-+--.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHH
Confidence 46788888888855443 33446777788889899999999999999877433332 35566666543221 112222
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 190 FAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEP-DSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
+-+.+.+.... .+.+|.++...|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 23344444332 6789999999999999999999999998876 44 56788888888888889999999999887542
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 269 FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
+.+-..|..+...|.+.++++.|+-.|+...+.+ |.+.+....+...+-+.|+.++|+++|++.....
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 2233355567778899999999999999888877 5566667777788888899999999999887643
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=5e-09 Score=101.13 Aligned_cols=286 Identities=12% Similarity=0.064 Sum_probs=181.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHH
Q 043758 518 EKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMY 597 (918)
Q Consensus 518 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 597 (918)
.|++..|+++..+..+.+ ......|..-..+-...|+.+.+-.++.+..+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477778877777766665 2234445555566667777788877777777652233444455555667777778888777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHH-------HHHHHHHHhhhcccccccccccc
Q 043758 598 LDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIA-------YIALVSGVCRRITGRKKWLDVNR 670 (918)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-------~~~ll~~~~~~~~~~~~~~~~~~ 670 (918)
..++.+.+ +-++........+|.+.|++.....+...+.+.+.-.+... |..+++-...
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~------------- 241 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD------------- 241 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc-------------
Confidence 77777765 44667777777888888888888888888877765444332 2222222111
Q ss_pred cchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 043758 671 CSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQM 750 (918)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 750 (918)
.+..+.....|+... ...+.++..-.+++.-+.++|+.++|.++..+
T Consensus 242 --------------------------------~~~~~gL~~~W~~~p-r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 242 --------------------------------DNGSEGLKTWWKNQP-RKLRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred --------------------------------cccchHHHHHHHhcc-HHhhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 111112222333322 22244566666777777788888888888777
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 043758 751 MKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK 829 (918)
Q Consensus 751 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 829 (918)
..+.+..|+ . .....+.+-++...-++..++.... +. ++..+..|...|.+.+.|.+|.+.|+...+ ..|+
T Consensus 289 ~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s 360 (400)
T COG3071 289 ALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPS 360 (400)
T ss_pred HHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCC
Confidence 777665554 1 1222455666777777766666654 33 336667777777888888888888876664 5677
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 830 KATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 830 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
..+|.-+..++-+.|++.+|....++.+..
T Consensus 361 ~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 361 ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777777777777777777777777776543
No 65
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.6e-10 Score=118.59 Aligned_cols=285 Identities=13% Similarity=0.051 Sum_probs=161.3
Q ss_pred chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHH
Q 043758 183 RTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG--CEPDSYTCNTLIHGFFKMGLFDKGWVL 260 (918)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 260 (918)
+..+|...|+.+.+.-.. +......+..+|...+++++|..+|+...+.. ..-+...|.+.+-.+-+ .+ +...
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~v--~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--EV--ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--hH--HHHH
Confidence 345666666665544221 33444556677777777777777777776542 11234456665533321 11 1112
Q ss_pred H-HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043758 261 Y-SQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRV 339 (918)
Q Consensus 261 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 339 (918)
+ +.+.+.. +..+.+|.++...|.-.++.+.|++.|++..+.+ +....+|+.+..-++....++.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 2 2222222 4456677777777777777777777777777654 33566666666667777777777777766632
Q ss_pred CCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHH
Q 043758 340 APDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIY 419 (918)
Q Consensus 340 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 419 (918)
.|...| .+|--+
T Consensus 484 -~~~rhY-------------------------------------------------------------------nAwYGl 495 (638)
T KOG1126|consen 484 -VDPRHY-------------------------------------------------------------------NAWYGL 495 (638)
T ss_pred -CCchhh-------------------------------------------------------------------HHHHhh
Confidence 333333 334455
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHc
Q 043758 420 ISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVR 499 (918)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 499 (918)
.-.|.++++++.|+..|+...+-+ +.+.+....+...+. +.|+.++|+++++++...
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~----------------------~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQH----------------------QLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHH----------------------HhhhhhHHHHHHHHHHhc
Confidence 566777777777777777776543 223333333333332 234555566666666555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 043758 500 GPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS 570 (918)
Q Consensus 500 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 570 (918)
++. |+..---.+..+...+++++|+..++++.+. ++-+...+..+...|.+.|+.+.|+.-|.-+...+
T Consensus 553 d~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 553 DPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred CCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 444 4433334455556666777777777776664 13334555666666767777777766666666553
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.3e-08 Score=100.73 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=68.1
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 537 DPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTAL 616 (918)
Q Consensus 537 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 616 (918)
.-++.......+-|...+++.+..++++.+.+.. ++....+..-|.++.+.|+..+-..+=.++++. .+..+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3445555555666667778888888888777654 455555655566777777777766666677665 35566778777
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 043758 617 INHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 617 ~~~~~~~g~~~~a~~~~~~~~ 637 (918)
..-|.-.|...+|.+.|.+..
T Consensus 319 g~YYl~i~k~seARry~SKat 339 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKAT 339 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHh
Confidence 777777788888888777765
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.1e-08 Score=98.35 Aligned_cols=518 Identities=11% Similarity=-0.003 Sum_probs=302.5
Q ss_pred cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043758 131 NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLI 210 (918)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 210 (918)
+..-+..+.+-+....++..|+-+-+++.. .+..|+... .+..++.-.|.++.|..+...-.-. ..|..+.....
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~-l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAG-LTNDPADIY--WLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-ccCChHHHH--HHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 334455666666667777888888787765 344444433 3666677777788877766653221 11667777777
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH
Q 043758 211 NGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVD 290 (918)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 290 (918)
..+.+..+++.|+.++.+-.. ..+...|..--. +..-..+.+. ++... ......+-.-...|....+.+
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~~--~~essic~lRgk~y~al~n~~ 158 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLMI--NLESSICYLRGKVYVALDNRE 158 (611)
T ss_pred HHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----ccccc--cchhceeeeeeehhhhhccHH
Confidence 777788888888887763211 001111100000 0000011111 00000 111111111223455566677
Q ss_pred HHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHH
Q 043758 291 AALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFA 370 (918)
Q Consensus 291 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (918)
+|...|.+... .|+..+.++...... ..-.+.+.+..+.... ..+. ...+.+..+.++....
T Consensus 159 ~ar~~Y~~Al~----~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~----~a~~--------~~ed~e~l~~lyel~~ 220 (611)
T KOG1173|consen 159 EARDKYKEALL----ADAKCFEAFEKLVSA--HMLTAQEEFELLESLD----LAML--------TKEDVERLEILYELKL 220 (611)
T ss_pred HHHHHHHHHHh----cchhhHHHHHHHHHH--HhcchhHHHHHHhccc----HHhh--------hhhHHHHHHHHHHhhh
Confidence 77777777664 334444333221111 1111111121111100 0000 0000111111111000
Q ss_pred hcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCccc
Q 043758 371 KIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFT 450 (918)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 450 (918)
......... ..-.+..-.+..-+......-.+-+...+++.+...+++.+.+.. ++....
T Consensus 221 ~k~~n~~~~-------------------~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~ 280 (611)
T KOG1173|consen 221 CKNRNEESL-------------------TRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPC 280 (611)
T ss_pred hhhcccccc-------------------ccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcch
Confidence 000000000 000000000111222444555667778899999999999998764 566666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 451 CNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKR 530 (918)
Q Consensus 451 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 530 (918)
+..-|.++...|+. .+-..+-.++++. .+....+|-++.-.|...|+.++|.+.|.+
T Consensus 281 ~~~~ia~l~el~~~----------------------n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SK 337 (611)
T KOG1173|consen 281 LPLHIACLYELGKS----------------------NKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSK 337 (611)
T ss_pred HHHHHHHHHHhccc----------------------chHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence 76777777666543 3333444555555 344788899999999999999999999999
Q ss_pred HHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 043758 531 MLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNV 610 (918)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 610 (918)
..... +.-...|-.+.+.|+-.+..++|+..+...-+. ++-....+--+.--|.+.++.+.|.++|....... +.|+
T Consensus 338 at~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dp 414 (611)
T KOG1173|consen 338 ATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDP 414 (611)
T ss_pred HhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcc
Confidence 87653 223467889999999999999999999887764 11122223334445788999999999999988753 5678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccc
Q 043758 611 VLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVT 690 (918)
Q Consensus 611 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (918)
.+.+-+.-.....+.+.+|...|+..+.. +..
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~------------ik~------------------------------------ 446 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEV------------IKS------------------------------------ 446 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHH------------hhh------------------------------------
Confidence 88888888888889999999999887521 000
Q ss_pred cchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 043758 691 RTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGH 770 (918)
Q Consensus 691 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 770 (918)
.. ....-...+++.|..+|.+.+.+++|+..+++.+.. .+.|..++.++.-.|
T Consensus 447 -------------------------~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 447 -------------------------VL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIY 499 (611)
T ss_pred -------------------------cc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHH
Confidence 00 000123457888889999999999999999998875 344677888888889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043758 771 IAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGL 805 (918)
Q Consensus 771 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 805 (918)
...|+++.|++.|++.+. +.|+..+-..++..+
T Consensus 500 ~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999999999999998876 677765555555543
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=1.1e-06 Score=92.60 Aligned_cols=509 Identities=13% Similarity=0.014 Sum_probs=298.7
Q ss_pred hHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH---HhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 043758 63 SALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILR---GLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLI 139 (918)
Q Consensus 63 ~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 139 (918)
.+.+.|..+..+.++.++++..+......+...++.++-.+-. .|...|+.+++ .+...+.+.-.+ ....+...+
T Consensus 228 ~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es~i~-Re~~~d~il 305 (799)
T KOG4162|consen 228 RAVELLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEESLIP-RENIEDAIL 305 (799)
T ss_pred HHHHHhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhhccc-cccHHHHHH
Confidence 3444444445777888888888888887775555544444332 24555666666 333333322212 111111111
Q ss_pred HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCh
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNM 219 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 219 (918)
... -.+.++.. ..+.-+...|..+.-++..+|+++.+.+.|++....-+. ....|+.+...|...|.-
T Consensus 306 slm----------~~~~k~r~-~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 306 SLM----------LLLRKLRL-KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSD 373 (799)
T ss_pred HHH----------HHHHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccc
Confidence 110 11222222 234456667777777788889999999999987765333 667889998899999999
Q ss_pred HHHHHHHHHHHhcCCCCChhh-HHHHHHHHH-hcCChhHHHHHHHHHHhC--CC--CccHhhHHHHHHHHHhc-------
Q 043758 220 KMAMRLFFRMLKTGCEPDSYT-CNTLIHGFF-KMGLFDKGWVLYSQMSDW--GF--QPNMVTDLIMISNYCRE------- 286 (918)
Q Consensus 220 ~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~------- 286 (918)
..|..+++.-......|+..+ +-..-..|. +.+.++++..+-.++... +. ...+..|..+.-+|...
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 999999887765432354443 333333333 567778888777777652 11 12234444444444321
Q ss_pred ----CCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHH
Q 043758 287 ----GEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHA 362 (918)
Q Consensus 287 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 362 (918)
-...++.+.+++..+.+ +.|..+...+.--|+..++.+.|.+..++..+.+-..+...+..+.-.+...+++..|
T Consensus 454 seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 12346677777777665 3344444444455677788888888888887765555555555555555555555555
Q ss_pred HHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 043758 363 LMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNF 442 (918)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 442 (918)
..+.+.......... .....-++.-...++.++++.....+...
T Consensus 533 l~vvd~al~E~~~N~------------------------------------~l~~~~~~i~~~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNH------------------------------------VLMDGKIHIELTFNDREEALDTCIHKLAL 576 (799)
T ss_pred HHHHHHHHHHhhhhh------------------------------------hhchhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 554443332211000 01111223333467777777776666531
Q ss_pred CCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHH--------HHcC-----------CCC
Q 043758 443 GYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQM--------EVRG-----------PKP 503 (918)
Q Consensus 443 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~-----------~~~ 503 (918)
-.+...+.. .++-....+.... ......+..++......+ ...| +.|
T Consensus 577 --we~~~~~q~-------~~~~g~~~~lk~~-----l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~ 642 (799)
T KOG4162|consen 577 --WEAEYGVQQ-------TLDEGKLLRLKAG-----LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGP 642 (799)
T ss_pred --HHhhhhHhh-------hhhhhhhhhhhcc-----cccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCC
Confidence 000000000 0000000000000 000111111111111111 1111 111
Q ss_pred C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchh
Q 043758 504 S------VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYP 577 (918)
Q Consensus 504 ~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 577 (918)
+ ...|......+.+.+..++|...+.+..+.. +-....|......+...|..++|.+.|......+ +-++.+
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s 720 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPS 720 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHH
Confidence 2 2346667778888899999998888877653 4456677777778888999999999999988764 334578
Q ss_pred HHHHHHHHHhcCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043758 578 YTALISGLVKKGMVDLGCM--YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTN 639 (918)
Q Consensus 578 ~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 639 (918)
..++...+.+.|+...|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|....+.
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8899999999999888877 999999886 678999999999999999999999999988753
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=3.1e-08 Score=104.94 Aligned_cols=298 Identities=13% Similarity=0.103 Sum_probs=204.9
Q ss_pred hhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 043758 62 QSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDG 141 (918)
Q Consensus 62 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (918)
+|.+-+...++...|++++|++.+......- ..........+..|.+.|+.++|...|..+++.+ |.|...|..+..+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 4555555677788999999999997755433 2234466688889999999999999999999997 5565566666666
Q ss_pred HHcC-----CChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH-HHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 043758 142 LCYK-----GFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV-EAESFAREMESQGFYVDKLMYTSLINGYCS 215 (918)
Q Consensus 142 ~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 215 (918)
+.-. .+.+...++|+.+.. .-|.......+.-.+.....+. .+...+..+..+|++ .+++.|-..|..
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 6322 356777899999876 2355444444433333333343 455667777888765 566777777776
Q ss_pred CCChHHHHHHHHHHHhc----C----------CCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHH
Q 043758 216 NRNMKMAMRLFFRMLKT----G----------CEPDSY--TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIM 279 (918)
Q Consensus 216 ~g~~~~A~~~~~~m~~~----~----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (918)
..+..-..+++...... + -+|+.. ++..+...|-..|++++|.+++++.++.. +-.+..|..-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~K 234 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTK 234 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 66666666666665432 1 123443 34555667789999999999999999884 3347788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH--------HHHHh
Q 043758 280 ISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLS--------FILLK 351 (918)
Q Consensus 280 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~ll~ 351 (918)
...|-+.|++.+|.+.++.....+ ..|-..-+.....+.+.|++++|.+++......+..|..... .-...
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 456666677788889999999999999888777654432211 11223
Q ss_pred hCCCCccHHHHHHHHHHH
Q 043758 352 NCPEGTELQHALMLLCEF 369 (918)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~ 369 (918)
++.+.|++..|...+..+
T Consensus 314 a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 445555555555544433
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=4.8e-10 Score=123.76 Aligned_cols=248 Identities=12% Similarity=0.004 Sum_probs=165.6
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhc---------hhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC
Q 043758 77 NIEDALRHFDRLISKNIVPIKLACVSILRGLFA---------EEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF 147 (918)
Q Consensus 77 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 147 (918)
++++|..+|+++++.++. +..+|..+..++.. .+++++|...++++.+.+ +.+..++..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 467888888888887754 45566665554432 345788888888888776 5567778888888888888
Q ss_pred hhHHHHHHHHHHhcCCCCCC-cccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 043758 148 LDEVLEVVNIMRKKKGLVPA-LHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLF 226 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 226 (918)
+++|...|+++.+ ..|+ ...+..+..++...|++++|...+++..+..+. +...+..++..+...|++++|+..+
T Consensus 354 ~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999888887 2343 456677777888888899999888888887554 3333444455566678888888888
Q ss_pred HHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-C
Q 043758 227 FRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN-L 304 (918)
Q Consensus 227 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 304 (918)
++..+.. +|+ ...+..+..++...|++++|.+.++++.... +.+....+.+...|+..| +.|...++.+.+.. .
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 8877543 243 3346666777788888888888888876542 223444555556667666 46776666655431 1
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 305 APSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 305 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
.+....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1222222 33344556666666666 666654
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.32 E-value=9.3e-07 Score=91.69 Aligned_cols=441 Identities=17% Similarity=0.108 Sum_probs=231.0
Q ss_pred HHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHH-------hCCCCCChhhHHHHHHHhhchhcHHHHHHHH
Q 043758 48 YSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLI-------SKNIVPIKLACVSILRGLFAEEKFLEAFDYF 120 (918)
Q Consensus 48 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 120 (918)
|-.+...-...|+.--|.+.| ..-|++..|..+.+... +.|.. ....|..-...-.-..++.+|..+|
T Consensus 480 w~~laelale~~nl~iaercf----aai~dvak~r~lhd~~eiadeas~~~ggd-gt~fykvra~lail~kkfk~ae~if 554 (1636)
T KOG3616|consen 480 WIRLAELALEAGNLFIAERCF----AAIGDVAKARFLHDILEIADEASIEIGGD-GTDFYKVRAMLAILEKKFKEAEMIF 554 (1636)
T ss_pred HHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHhhCCC-CchHHHHHHHHHHHHhhhhHHHHHH
Confidence 344444445566655555555 55566666655554332 12211 1123332222223345778887776
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCC
Q 043758 121 IKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFY 200 (918)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 200 (918)
-+- | .-...|..|....+|++|+.+-+.. |.+.-...-.+.+.++...|+-+.|-++ ...
T Consensus 555 leq-------n--~te~aigmy~~lhkwde~i~lae~~----~~p~~eklk~sy~q~l~dt~qd~ka~el----k~s--- 614 (1636)
T KOG3616|consen 555 LEQ-------N--ATEEAIGMYQELHKWDEAIALAEAK----GHPALEKLKRSYLQALMDTGQDEKAAEL----KES--- 614 (1636)
T ss_pred Hhc-------c--cHHHHHHHHHHHHhHHHHHHHHHhc----CChHHHHHHHHHHHHHHhcCchhhhhhh----ccc---
Confidence 431 1 2345566777788888888876543 3332233344556666666776666543 222
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHH
Q 043758 201 VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMI 280 (918)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 280 (918)
+..+ -+-|..|.+.|.+.+|.+....-.. +..|......+..++.+..-+++|-.+|+++.. |+ ..+
T Consensus 615 -dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~d-----kal 681 (1636)
T KOG3616|consen 615 -DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD-----KAL 681 (1636)
T ss_pred -cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH-----HHH
Confidence 2222 3457788899988888776432221 234556666666677777677777777776642 11 223
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCcchH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccH
Q 043758 281 SNYCREGEVDAALMLLNSKVSSNLAPSVHCY-TVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTEL 359 (918)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 359 (918)
..|-+-.-+-+|.++-+-.. |..++.. ......+...|+++.|...|-+... .
T Consensus 682 e~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~------------- 735 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------L------------- 735 (1636)
T ss_pred HHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------H-------------
Confidence 33333333455555443322 1111111 1223344455666666655533311 0
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHH
Q 043758 360 QHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQL 439 (918)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 439 (918)
-..+.+.....+|.+|+.+++.+
T Consensus 736 ---------------------------------------------------------~kaieaai~akew~kai~ildni 758 (1636)
T KOG3616|consen 736 ---------------------------------------------------------IKAIEAAIGAKEWKKAISILDNI 758 (1636)
T ss_pred ---------------------------------------------------------HHHHHHHhhhhhhhhhHhHHHHh
Confidence 11222233334444444444444
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcc----cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043758 440 VNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDT----EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHL 515 (918)
Q Consensus 440 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 515 (918)
.... ...-.|..+...|+..|+++.|.++|...... .+|.+.|+++.|.++-++. .|+......|-+-..-+
T Consensus 759 qdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 759 QDQK--TASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDL 834 (1636)
T ss_pred hhhc--cccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhH
Confidence 3321 11222333334444444444444443332211 3344555556665555443 23454556666666677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHH
Q 043758 516 CKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGC 595 (918)
Q Consensus 516 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 595 (918)
-+.|++.+|+++|-.+. .|+. .|..|-+.|..+..+++.++-... .=..|...+..-+-..|++..|.
T Consensus 835 dehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHH
Confidence 78888888888776554 3443 456778888888777776553221 11235556667777888888887
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043758 596 MYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLEN 634 (918)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 634 (918)
.-|-+.. -|.+-++.|..++-|++|.++-+
T Consensus 903 ~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 903 EHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 7664432 35566677777777777765543
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.1e-07 Score=99.67 Aligned_cols=421 Identities=12% Similarity=0.025 Sum_probs=226.6
Q ss_pred ChhhHHHHHH--HhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCC--------CC
Q 043758 96 IKLACVSILR--GLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKG--------LV 165 (918)
Q Consensus 96 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~ 165 (918)
|+.+..+++. -|..-|+.+.|.+..+-+... .+|..+.+.|.+.++++-|.-.+..|....| ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4556666664 367778999998887776533 4788899999988888888777766653111 12
Q ss_pred CCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 043758 166 PALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLI 245 (918)
Q Consensus 166 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 245 (918)
|+ ..-........+.|..++|+.+|.+..+. ..|=..|-..|.+++|+++-+.-.+.. =..||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 22 22222233345779999999999988774 344456677899999998876533322 224666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChh
Q 043758 246 HGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLM 325 (918)
Q Consensus 246 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 325 (918)
.-+-..++.+.|++.|++.-.. --.+.. |+ ..++...+...+.+. |...|.-...-+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~r-mL-----~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFR-ML-----KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHH-HH-----HhChHHHHHHHHhcc------chHHHHHHHHHHhcccchH
Confidence 6677788899999888864321 111111 11 112222222233322 2333444444445567777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHH
Q 043758 326 EVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIV 405 (918)
Q Consensus 326 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 405 (918)
.|+.+|..... |-.+.+..+-.|..++|.++-++-..
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esgd---------------------------------- 966 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESGD---------------------------------- 966 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhccc----------------------------------
Confidence 77777766543 33344555555666655554433211
Q ss_pred hcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCC
Q 043758 406 KSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGN 485 (918)
Q Consensus 406 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 485 (918)
..+.-.+.+.|-..|++.+|+..|.+.. ++...|+.|-..+--++-..+ -.+ ....+
T Consensus 967 -------~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nl-al~------s~~~d 1023 (1416)
T KOG3617|consen 967 -------KAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANL-ALM------SGGSD 1023 (1416)
T ss_pred -------HHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHH-Hhh------cCchh
Confidence 1333456677777788888887777665 344455543332221111111 111 12223
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHCC--CCCcHHHHHHHHHHHHcCCC
Q 043758 486 LDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKR--------MLKAG--IDPDEVFFTTMINGYLQNRK 555 (918)
Q Consensus 486 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~~--~~~~~~~~~~l~~~~~~~~~ 555 (918)
.-.|...|++.- .. ....+..|-+.|.+.+|+++--+ ++... ...|+...+...+-++...+
T Consensus 1024 ~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1024 LVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 334444444321 11 11223356666666666554221 11111 23456666667777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 043758 556 PIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD-GFVPNV----VLYTALINHFLRAGEFEFAS 630 (918)
Q Consensus 556 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~ 630 (918)
+++|..++-..++ |...+..| +..++.-..++-+.|.-. +-.|+. .+...+..+|.+.|.+..|-
T Consensus 1096 yekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1096 YEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 7777777766553 22222222 333333333333333222 112322 34555666777777777766
Q ss_pred HHHHH
Q 043758 631 RLENL 635 (918)
Q Consensus 631 ~~~~~ 635 (918)
+-|.+
T Consensus 1166 KKfTQ 1170 (1416)
T KOG3617|consen 1166 KKFTQ 1170 (1416)
T ss_pred HHHhh
Confidence 55543
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.31 E-value=5.1e-07 Score=97.25 Aligned_cols=667 Identities=9% Similarity=-0.014 Sum_probs=329.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCC-cccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 043758 147 FLDEVLEVVNIMRKKKGLVPA-LHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRL 225 (918)
Q Consensus 147 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 225 (918)
+...|...|=+..+ ..++ ...|..|...|+...+...|.+.|+...+.... +...+......|+...+++.|..+
T Consensus 473 ~~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 35555555555443 3333 456777888888777888899999988887554 777888899999999999999988
Q ss_pred HHHHHhcCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 226 FFRMLKTGCEPDSYT--CNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 226 ~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
.-..-+.. +..... |....-.+-..++..++..-|+...... +-|...|..++.+|..+|.+..|.++|.++...+
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 44433321 111122 3333334557788888888888888765 5577789999999999999999999998777643
Q ss_pred CCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCC
Q 043758 304 LAPSV-HCYTVLIDALYKHNRLMEVDELYKKMLANR------VAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGI 376 (918)
Q Consensus 304 ~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (918)
|+. ..-....-..+..|++.+|++.+....... ...-..++......+...|-...+..+++.....
T Consensus 627 --P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~---- 700 (1238)
T KOG1127|consen 627 --PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES---- 700 (1238)
T ss_pred --cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----
Confidence 332 222223334566789999998887765421 0001111111111111112122222222111110
Q ss_pred ChhhhHHHhhcCC-CCC-----hHHHHHHHHHHHHhcCCCCchHhHHHHHHH-HHccCCh---H---HHHHHHHHHHHCC
Q 043758 377 DPLARSISATLNP-TGD-----LCQEIELLLRKIVKSDPKLANVAFTIYISA-LCKGGKY---E---KAYVCLFQLVNFG 443 (918)
Q Consensus 377 ~~~~~~~~~~~~~-~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~---~---~A~~~~~~~~~~~ 443 (918)
....+... ..+ ....+...|-.+. .+ .++ ..+..++.. .-..+.. + -+.+.+-.-.+
T Consensus 701 -----f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn-~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 701 -----FIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVN-MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred -----HHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chH-HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 00000000 000 0112222222222 11 111 112111111 1111111 1 11111111111
Q ss_pred CCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043758 444 YRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILE 523 (918)
Q Consensus 444 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 523 (918)
...+..+|..+...+.+.- ..+. -...+...|...+.+.++..- .+...|++|.-. ...|.+.-
T Consensus 771 l~~~~~~WyNLGinylr~f---------~~l~-----et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~ 834 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYF---------LLLG-----ETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVAC 834 (1238)
T ss_pred HhhccchHHHHhHHHHHHH---------HHcC-----CcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhh
Confidence 1223444444444433200 0000 011122456666666665522 256666666544 55566666
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHH--H
Q 043758 524 AEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDR--M 601 (918)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~ 601 (918)
|..-|-+-.... +....+|..+...+.++.+++.|...|.+.+... +.|...|..........|+.-++..+|.. .
T Consensus 835 aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~e 912 (1238)
T KOG1127|consen 835 AQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDE 912 (1238)
T ss_pred hhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 666666555443 4456677777777778888888888888777653 33444454433334456666666666655 1
Q ss_pred HhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHH
Q 043758 602 LAD--GFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEML 679 (918)
Q Consensus 602 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (918)
... |-.++...|-+........|+.++-+...+.+... .-.+
T Consensus 913 l~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA------------------------------------s~al 956 (1238)
T KOG1127|consen 913 LCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA------------------------------------SLAL 956 (1238)
T ss_pred hhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh------------------------------------HHHH
Confidence 111 33445555555555556666666655554444321 1112
Q ss_pred HHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHh-cCCCCChhhHHHHH----HHHHccCChhHHHHHHHHHHHc
Q 043758 680 FHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKD-IEFMPNLYLYNDIF----LLLCGVGRMDDAYDHFQMMKRE 754 (918)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~m~~~ 754 (918)
.+.+...+....++.......-..+....+.....+... ....-+...|+.+. +.+...|.++.|..-+.....
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~- 1035 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM- 1035 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch-
Confidence 223333444444444444444444444444443333210 00122334444322 333333444433332221111
Q ss_pred CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 043758 755 GLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDK-TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKAT 832 (918)
Q Consensus 755 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 832 (918)
..+......-+. ..-.|+++++.+.|+++..- +-.-+. .....++.+....+.-+.|...+-+.... .+|+...
T Consensus 1036 --evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~s 1111 (1238)
T KOG1127|consen 1036 --EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASS 1111 (1238)
T ss_pred --hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-Cccchhh
Confidence 112222222222 23457788888888887664 222232 33444445556667777777776666543 3455555
Q ss_pred HHHHHHHHHccCChhh---HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 833 YEHLLECFCANCLSIP---AFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 833 ~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.-.+-..+.-..+-.. +++-+++.+.... -+-......-.+|.+.||-....+++++..-..
T Consensus 1112 ll~L~A~~ild~da~~ssaileel~kl~k~e~-~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~ 1176 (1238)
T KOG1127|consen 1112 LLPLPAVYILDADAHGSSAILEELEKLLKLEW-FCWPPGLLKELIYALQGRSVAVKKQIQRAVHSN 1176 (1238)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHH-hccChhHHHHHHHHHhhhhHHHHHHHHHHHhcC
Confidence 4444443333333333 3333333333221 123333445556777788887777777665443
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=5e-10 Score=104.02 Aligned_cols=231 Identities=12% Similarity=0.041 Sum_probs=180.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhh
Q 043758 579 TALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRR 658 (918)
Q Consensus 579 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 658 (918)
+.+.++|.+.|.+.+|.+.++...+. .|-+.||..|..+|.+..+++.|+.++.+-.+ .-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~f---------------- 286 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SF---------------- 286 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cC----------------
Confidence 56778888888888888888887765 56677888888888888888888888877653 12
Q ss_pred cccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 043758 659 ITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGV 738 (918)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 738 (918)
+-++....-+...+-..
T Consensus 287 ---------------------------------------------------------------P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 287 ---------------------------------------------------------------PFDVTYLLGQARIHEAM 303 (478)
T ss_pred ---------------------------------------------------------------CchhhhhhhhHHHHHHH
Confidence 22333444445566666
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 043758 739 GRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVF 818 (918)
Q Consensus 739 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 818 (918)
++.++|.++|+...+.. +.+......+...|.-.++++.|+.+|+.+++.|+. +++.|+.+..+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 78888999988887742 234445566667788888999999999999988876 7788888888888899999999988
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 819 YSMHKRGFVPKK--ATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 819 ~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
++....--.|+. .+|-.+.....-.|++..|.+-+.-.+..+ +.+.++++.|+..-.+.|+.++|+.++.......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 888765444544 368888777788899999999999888877 7888999999999999999999999998776554
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=1.4e-09 Score=120.01 Aligned_cols=217 Identities=13% Similarity=0.009 Sum_probs=161.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHH
Q 043758 74 ALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLE 153 (918)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (918)
..|++++|...++++++.++. +..++..+..++...|++++|+..|+++.+.+ |.+...+..+...+...|++++|+.
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345688999999999998865 67788888889999999999999999999886 5567788889999999999999999
Q ss_pred HHHHHHhcCCCCCCcc-cHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 154 VVNIMRKKKGLVPALH-PYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 154 ~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
.+++..+ ..|+.. .+..++..+...|++++|...+++..+...+-++..+..+..+|...|++++|...+.++...
T Consensus 394 ~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999987 344432 333445556678999999999999887643335566788888899999999999999997654
Q ss_pred CCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 233 GCEPDSY-TCNTLIHGFFKMGLFDKGWVLYSQMSDWG-FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 233 ~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
.|+.. ..+.+...+...| +.+...++.+.+.. ..+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 471 --~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred --cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 44433 3455555666666 47777777776542 12222222 44456667787777766 777654
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=8.2e-10 Score=102.65 Aligned_cols=270 Identities=10% Similarity=-0.023 Sum_probs=214.4
Q ss_pred CchhHHhhhhhhhHhcCChHHHHHHHHHHHhCC-CCCC------hh-hH-HHHHHHhhchhcHHHHHHHHHHHhhcCCCC
Q 043758 60 QSQSALLLYQNDFVALGNIEDALRHFDRLISKN-IVPI------KL-AC-VSILRGLFAEEKFLEAFDYFIKICNAGVDL 130 (918)
Q Consensus 60 ~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~------~~-~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 130 (918)
++..+..+|.-++...+|+..|........+.. ..|+ .. -| +.+.+.|.+.|.+.+|...++...+. .|
T Consensus 177 ~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~ 254 (478)
T KOG1129|consen 177 RPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FP 254 (478)
T ss_pred ChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CC
Confidence 445566677777777778887775554443321 1111 11 12 37889999999999999999988766 56
Q ss_pred cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043758 131 NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLI 210 (918)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 210 (918)
.+.||-.+..+|.+....+.|+.++..-.. .++.++.....+.+.+-..++.++|.++++...+.... ++.....+.
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia 331 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIA 331 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeee
Confidence 777899999999999999999999999875 45666666677888888899999999999999887443 777777888
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHHHHHHHhcCC
Q 043758 211 NGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIMISNYCREGE 288 (918)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 288 (918)
..|.-.++++-|+..|.++.+.|+. +...|+.+.-+|.-.++++-++..|+.....--.|+ ..+|-.+.......||
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 8888999999999999999999864 677888888888888999999999988876543444 3467778888889999
Q ss_pred HHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 289 VDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+.-|.+.|+-....+ +.+..++|.|.-.-.+.|++++|..++.....
T Consensus 411 ~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999999988776 46678899988888999999999999988765
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=1.7e-09 Score=106.80 Aligned_cols=190 Identities=13% Similarity=0.040 Sum_probs=87.3
Q ss_pred hHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHH
Q 043758 72 FVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEV 151 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (918)
+...|++++|...|+++.+.++. +..++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 34445555555555554443322 33344445555555555555555555554443 22333444444555555555555
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 152 LEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
.+.++........+. ....+..+...+...|++++|...|++..+
T Consensus 119 ~~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQ-----------------------------------PARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHhcccccc-----------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555443111111 222344444445555555555555555444
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 232 TGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 232 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|+.+.|..+.+.+.
T Consensus 164 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 164 ID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred hC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 31 1122344444445555555555555555554431 2333344444445555555555555544443
No 78
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=9.7e-07 Score=92.87 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=147.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC--------CCCcchhHHHHHHHHHc
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG--------VDLNCWSYNVLIDGLCY 144 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 144 (918)
.--|+.+.|.+..+-+. +...|..+.+.+.+..+.+-|.-.+..|.... .+.+...-.........
T Consensus 739 vtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 66788898877776654 44589999999999888887776665554211 11111222333344557
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMR 224 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (918)
.|.+++|+.+|.+-.+ |..|=..|...|++.+|.++-+.-.+- . =..||.....-+-..++.+.|++
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHH
Confidence 8999999999988765 223445677889999998887654332 1 23466666666666788888888
Q ss_pred HHHHHH----------hcCC---------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 225 LFFRML----------KTGC---------EPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 225 ~~~~m~----------~~~~---------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
.|++.. .... ..|...|..-...+-..|+.+.|+.+|..... |-+++...|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 887532 1110 11222333333334455666666666665432 4556677777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 286 EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
.|+.++|-++-++- .|..+...+.+.|-..|++.+|..+|.+..
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 78888887776653 345566677888888888888888887764
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.19 E-value=7.5e-09 Score=102.20 Aligned_cols=168 Identities=13% Similarity=0.012 Sum_probs=133.6
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGC-VPDKTVYNTLL 802 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~ 802 (918)
+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++..... ......+..+.
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG 142 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 45667777888888899999999999888753 23445677778888899999999999999887522 22445677788
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 043758 803 KGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFH 882 (918)
Q Consensus 803 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 882 (918)
.++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..... +.++..+..++.++...|+.+
T Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 143 LCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 88999999999999999988642 2345577788888899999999999999988774 667778888899999999999
Q ss_pred HHHHHHHHHHhC
Q 043758 883 EAQIVLDVMHKR 894 (918)
Q Consensus 883 ~A~~~~~~~~~~ 894 (918)
+|..+.+.+.+.
T Consensus 221 ~a~~~~~~~~~~ 232 (234)
T TIGR02521 221 AAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhh
Confidence 999998887654
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2e-06 Score=87.69 Aligned_cols=136 Identities=18% Similarity=0.132 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHH--------HHHhCCCCCCchhHHHHHHHHHhcCCh
Q 043758 520 RILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFE--------KMKENSVQPGSYPYTALISGLVKKGMV 591 (918)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 591 (918)
.+..+.+++...-+.....+..+.-.++......|+++.|++++. .+.+.+..|. +...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 467777777777665322234566677778889999999999999 5555555554 445566677788777
Q ss_pred hHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhh
Q 043758 592 DLGCMYLDRMLAD--GFVPN----VVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRR 658 (918)
Q Consensus 592 ~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 658 (918)
+.|..++...+.. ...+. ..++.-+...-.+.|+.++|..+++++.+. ..+|..+...++.+|++.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence 7777777766543 11122 234444455557889999999999999863 456778888899998875
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.2e-06 Score=83.09 Aligned_cols=303 Identities=15% Similarity=0.045 Sum_probs=160.9
Q ss_pred CCcHHHHHHHHHHH--HcCCChHHHHHHHHHHHhC-CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHH
Q 043758 537 DPDEVFFTTMINGY--LQNRKPIEACQLFEKMKEN-SVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPN-VVL 612 (918)
Q Consensus 537 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~ 612 (918)
+|...+....+.++ +-.++...|...+-.+... -++-|+..+..+.+.+...|+.++|...|+..... .|+ ...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 34333333333333 3344444444444333322 24556666777777888888888888888777654 232 223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccc
Q 043758 613 YTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRT 692 (918)
Q Consensus 613 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (918)
.....-.+.+.|++++...+...+....- .| ...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~----~t------------------------------------------a~~ 302 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVK----YT------------------------------------------ASH 302 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhh----cc------------------------------------------hhh
Confidence 33333445567777777666666643110 00 000
Q ss_pred hhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHH
Q 043758 693 KSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHI 771 (918)
Q Consensus 693 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 771 (918)
+......+...++++.|..+-++..... +.+...+-.-...+...|++++|.-.|...+. +.| +..+|..|+.+|.
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHH
Confidence 1111122223355555555555444222 22344444445666666777777776766655 333 3446777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-HcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChhh
Q 043758 772 AAGEIDQAIGLFNQMNADGCVPDKTVYNTLL-KGLC-QAGRLSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCANCLSIP 848 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~ 848 (918)
..|.+.+|...-+...+. +.-+..++..+. ..+. ...--++|.+++++..+ +.|+-. ....+...+...|.+.+
T Consensus 380 A~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred hhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccch
Confidence 777777766555544442 222333333331 2222 11223556666666553 445433 34445556666677777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 849 AFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 849 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
+..++++.+.. .||...+..|++++...+.+.+|.+.|...+..+
T Consensus 457 ~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 457 IIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 77777766643 5666667777777777777777777666665555
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=2.6e-06 Score=90.66 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHH
Q 043758 507 IYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD-EVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGL 585 (918)
Q Consensus 507 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (918)
++.-+...|...|++++|++++++.++. .|+ +..|..-...+-..|++++|.+.++..+..+ ..|...-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 4455677788899999999999998887 455 5677788888899999999999999998875 34666667777888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 586 VKKGMVDLGCMYLDRMLADGFVPNVV------LY--TALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
.+.|++++|.+++......+..|-.. .| .-...+|.+.|++..|++.|..+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 89999999999998887775433221 11 344567788888888887777665
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=3.1e-08 Score=88.30 Aligned_cols=193 Identities=12% Similarity=-0.019 Sum_probs=161.6
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
-+...|+...|..-++++++.++. +..+|..+...|.+.|..+.|.+.|+++.... +-+-.+.|.....+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHH
Confidence 348889999999999999998855 66688899999999999999999999998876 5577899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 043758 151 VLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRML 230 (918)
Q Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 230 (918)
|.+.|+..........-..+|..+.-+..+.|+++.|...|++..+..+. .+.+.-.+.......|++..|...+++..
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 99999999874444445678888888888999999999999999887554 56677888888999999999999999988
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 231 KTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDW 267 (918)
Q Consensus 231 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 267 (918)
..+. ++..+.-..|+.-...|+.+.+.++=.++...
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7764 78888888888888889988887776666554
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.8e-06 Score=86.62 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCcHHHHHHHHHHHHcCCCh
Q 043758 485 NLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFK--------RMLKAGIDPDEVFFTTMINGYLQNRKP 556 (918)
Q Consensus 485 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 556 (918)
....+..++...-+..+..+..+.-.++......|+++.|.+++. .+.+.+..|-. ...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCC
Confidence 345666666666665455456677777888889999999999999 55555444444 44566667777777
Q ss_pred HHHHHHHHHHHhC--CCCCCchhHHHHHH----HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043758 557 IEACQLFEKMKEN--SVQPGSYPYTALIS----GLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFAS 630 (918)
Q Consensus 557 ~~A~~~~~~~~~~--~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 630 (918)
+.|..++.+..+. .-.+.......++. .-.+.|+.++|..+++++.+.. ++|..+...++.+|.+. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 7788877776542 11223333333333 3345799999999999999864 77899999999999876 578887
Q ss_pred HHHHHH
Q 043758 631 RLENLM 636 (918)
Q Consensus 631 ~~~~~~ 636 (918)
.+-+.+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 776554
No 85
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.4e-10 Score=80.08 Aligned_cols=49 Identities=45% Similarity=0.815 Sum_probs=35.4
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 043758 201 VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFF 249 (918)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 249 (918)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5667777777777777777777777777777777777777777777665
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=3.3e-08 Score=103.28 Aligned_cols=244 Identities=14% Similarity=0.068 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHH
Q 043758 576 YPYTALISGLVKKGMVDLGCMYLDRMLAD-----GF-VPNVV-LYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAY 648 (918)
Q Consensus 576 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 648 (918)
.+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~---------- 269 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT---------- 269 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------
Confidence 34444666666666666666666655543 11 22222 233467778888999999988888763
Q ss_pred HHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhH
Q 043758 649 IALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLY 728 (918)
Q Consensus 649 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 728 (918)
+++...-...+.-..++
T Consensus 270 ---------------------------------------------------------------i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 270 ---------------------------------------------------------------IREEVFGEDHPAVAATL 286 (508)
T ss_pred ---------------------------------------------------------------HHHHhcCCCCHHHHHHH
Confidence 11111101112234677
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHc-----CCC-CcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC----C
Q 043758 729 NDIFLLLCGVGRMDDAYDHFQMMKRE-----GLR-PNQV-TFCILINGHIAAGEIDQAIGLFNQMNAD---GCVP----D 794 (918)
Q Consensus 729 ~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~-p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p----~ 794 (918)
+.|..+|.+.|++++|...+++..+. |.. |... .++.++..|...+++++|..+++...+. -+.+ .
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 77888888888888887777765432 222 2222 4566677788899999999888876553 1222 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHccCChhhHHHHHHHHH----hCC--C
Q 043758 795 KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR----GF--VP-KKATYEHLLECFCANCLSIPAFNMFKEMI----VHD--H 861 (918)
Q Consensus 795 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~--~ 861 (918)
..+++.|...|...|++++|.++++++... +. .+ ....++.+...|.+.++..+|..++.+.. ..| .
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 367889999999999999999999987632 12 22 23467888888899999998888887754 233 1
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 862 VPCLSNCNWLLNILCQEKHFHEAQIVLDVMH 892 (918)
Q Consensus 862 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 892 (918)
|....+|..|+..|.+.|++++|.++.+.+.
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2224568889999999999999999988775
No 87
>PF13041 PPR_2: PPR repeat family
Probab=99.08 E-value=2.9e-10 Score=78.42 Aligned_cols=49 Identities=35% Similarity=0.743 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 043758 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHI 771 (918)
Q Consensus 723 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 771 (918)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666665566666666666655554
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=6e-08 Score=101.36 Aligned_cols=242 Identities=14% Similarity=0.088 Sum_probs=163.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCCCchhH-HHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CC
Q 043758 542 FFTTMINGYLQNRKPIEACQLFEKMKEN-----S-VQPGSYPY-TALISGLVKKGMVDLGCMYLDRMLAD-----GF-VP 608 (918)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~ 608 (918)
+...+...|...|+++.|+.+++..++. | ..|...+. +.+...|...+++++|..+|+++.+- |- .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555566666666666666555432 1 12333222 23666778888899998888887764 21 12
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCc
Q 043758 609 -NVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGT 687 (918)
Q Consensus 609 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (918)
-..+++.|..+|.+.|++++|...+++..+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~------------------------------------------------- 311 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALE------------------------------------------------- 311 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHH-------------------------------------------------
Confidence 245677888889999999999998888753
Q ss_pred ccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCcH---
Q 043758 688 LVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNL-YLYNDIFLLLCGVGRMDDAYDHFQMMKRE---GLRPNQ--- 760 (918)
Q Consensus 688 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~--- 760 (918)
|.++.. ....|.+ ..++.++..+...+++++|..+++...+. -..++.
T Consensus 312 ------------------------I~~~~~-~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 312 ------------------------IYEKLL-GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred ------------------------HHHHhh-ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 111100 0011222 34566667778888888888888765442 122333
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCC-C
Q 043758 761 -VTFCILINGHIAAGEIDQAIGLFNQMNAD-----G-CVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK----RGF-V 827 (918)
Q Consensus 761 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~ 827 (918)
.+++.|...|...|++++|.++++++++. | ..+ ....++.+...|.+.+.+.+|..+|.+... .|. .
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 37888999999999999999999998764 1 122 246778888999999999999999887653 221 2
Q ss_pred C-CHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 043758 828 P-KKATYEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 828 p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
| ...+|..|...|.+.|+++.|+++.+...
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 33578999999999999999999988875
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=1.4e-07 Score=95.02 Aligned_cols=194 Identities=15% Similarity=0.001 Sum_probs=90.1
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA-LHPYKSLFYA 177 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~ 177 (918)
.|..+...|...|+.++|+..|++..+.. +.+...|+.+...+...|++++|.+.|+...+ ..|+ ..++..+..+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 44455555555556666655555555544 33445555555555556666666665555554 2222 3344445555
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKG 257 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 257 (918)
+...|++++|.+.|+...+..+. +. ........+...+++++|...|.+..... .|+...+ . ......|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH
Confidence 55555666666666555554322 11 11111112223455566666664433221 1221111 1 111223343332
Q ss_pred HHHHHHHHhC---CC---CccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 258 WVLYSQMSDW---GF---QPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 258 ~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
+.+..+.+. .+ +.....|..+...+.+.|++++|...|+...+.+
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233333211 10 1122355566666666666666666666666544
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=1.1e-07 Score=95.81 Aligned_cols=220 Identities=10% Similarity=-0.093 Sum_probs=124.8
Q ss_pred chhcHHHHHHHHHHHhhcC-CCC--cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH
Q 043758 109 AEEKFLEAFDYFIKICNAG-VDL--NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV 185 (918)
Q Consensus 109 ~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 185 (918)
..+..+.++..+.+++... ..| ....|..+...+.+.|+.+.|...|+...+ -.+.+...|+.+...+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHH
Confidence 3345566666666665432 111 123466666677777777777777777765 12334566677777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 186 EAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
+|...|++..+..+. +..+|..+..++...|++++|++.|++..+. .|+..............++.++|...+++..
T Consensus 116 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777777765443 4566667777777777777777777777665 3433221222222334566777777776544
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS---NL---APSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
... .++... ..+.. ...|+...+ +.++.+.+. .+ +....+|..+...+.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 322 222221 12222 223444333 233333211 10 1223467777777777777777777777776644
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=1.2e-05 Score=76.07 Aligned_cols=331 Identities=10% Similarity=0.036 Sum_probs=206.3
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccH-HHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPY-KSLFYA 177 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~ll~~ 177 (918)
--..+.+.+..+|++..|+.-|..+++.+ +.+..++..-...|...|+...|+.=++++++ +.||...- ......
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchh
Confidence 33466777888899999999999888765 44555666667788889999999998888876 66774322 333455
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKG 257 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 257 (918)
+.+.|.+++|+.-|+.+....+. . |...+|.+-+..+.+. ......+..+...|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s--~-------------~~~~eaqskl~~~~e~------~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPS--N-------------GLVLEAQSKLALIQEH------WVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCC--c-------------chhHHHHHHHHhHHHH------HHHHHHHHHHhcCCchhhH
Confidence 77889999999999998887432 1 1111121111111100 1122234445566777777
Q ss_pred HHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 258 WVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
+.....+++.. +.|...|..-..+|...|++..|+.=++...+.. ..++..+..+-..+...|+.+.++...++.++
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK- 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK- 251 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence 77777777654 5677777777777778888877777666655543 34555666666677777777777777777665
Q ss_pred CCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHH
Q 043758 338 RVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFT 417 (918)
Q Consensus 338 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (918)
+.||...+-... ....++...+
T Consensus 252 -ldpdHK~Cf~~Y--------------------------------------------KklkKv~K~l------------- 273 (504)
T KOG0624|consen 252 -LDPDHKLCFPFY--------------------------------------------KKLKKVVKSL------------- 273 (504)
T ss_pred -cCcchhhHHHHH--------------------------------------------HHHHHHHHHH-------------
Confidence 445543221110 0001111000
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHH
Q 043758 418 IYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQME 497 (918)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 497 (918)
.-+......++|.++++..+...+.........++..-..| . .+...+++.+|++...+++
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c-~------------------C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC-T------------------CYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee-e------------------cccccCCHHHHHHHHHHHH
Confidence 01223445677888888888777654222233333221111 0 1234567788888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043758 498 VRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAG 535 (918)
Q Consensus 498 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (918)
+..+. |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 335 ~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 335 DIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 75322 58888888889998899999999999998864
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.2e-05 Score=78.28 Aligned_cols=289 Identities=10% Similarity=-0.025 Sum_probs=151.8
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMR 224 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (918)
.++...|...+-.+.....++-|+.....+..++...|+..+|+..|+.....++. +...-....-.+.+.|+++....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 34444444444333332344555555556666666666666666666665554211 11111111222334555555555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 043758 225 LFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNL 304 (918)
Q Consensus 225 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 304 (918)
+...+.... +.....|..-+..+....+++.|..+-++.+..+ +.+...+..-...+...|+.+.|.-.|+......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 544444321 1122233333333344455556655555555443 2233333333444555566666666665554432
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHH
Q 043758 305 APSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSIS 384 (918)
Q Consensus 305 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (918)
|-+..+|.-|+.+|...|++.+|.-.-+..... ...+..+...+- .
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g---------------------------------~ 410 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFG---------------------------------T 410 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhc---------------------------------c
Confidence 335556666666666666666655544333221 111111111110 0
Q ss_pred hhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh
Q 043758 385 ATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFL 464 (918)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 464 (918)
..........+.|++++++-...+|... .+.+.+...+...|+.++++.+++..+.. .||....+.+...+...+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L~~~P~Y~-~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSLKINPIYT-PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeeccCchhHHHHHHHHHhhhccCCccH-HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhH
Confidence 1122223335777777777777666443 45677888999999999999999998875 68988888888887766655
Q ss_pred hhHHHHHHHh
Q 043758 465 EGANAIVELM 474 (918)
Q Consensus 465 ~~a~~~~~~~ 474 (918)
++|.+.|..+
T Consensus 488 Q~am~~y~~A 497 (564)
T KOG1174|consen 488 QKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=4e-08 Score=87.58 Aligned_cols=165 Identities=17% Similarity=0.119 Sum_probs=112.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ-VTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKG 804 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 804 (918)
....|.-.|.+.|+...|..-+++.++. .|+. .++..+...|-+.|+.+.|.+.|++..+. .| +..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3444556677777777777777777763 4443 36666666677777777777777777763 33 44666777777
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVPK-KATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHE 883 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (918)
+|..|++++|...|++....+.-|. ..+|..+..|..+.|+++.|...+++.++.+ |..+.....+...+.+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 7777777777777777775544443 3367777777777777777777777777776 6667777777777777777777
Q ss_pred HHHHHHHHHhCCC
Q 043758 884 AQIVLDVMHKRGR 896 (918)
Q Consensus 884 A~~~~~~~~~~~~ 896 (918)
|...+++....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 7777776665554
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.6e-06 Score=80.15 Aligned_cols=307 Identities=12% Similarity=0.097 Sum_probs=187.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHH-HHHHHHcCCChhHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNV-LIDGLCYKGFLDEV 151 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A 151 (918)
.+..++.+|++++..-.+++++ +......+...|....++..|.+.|+++.... |...-|.. -...+.+.+.+..|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHH
Confidence 4455667777777777777644 67788888999999999999999999988664 33333322 33556688999999
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHH--HHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 043758 152 LEVVNIMRKKKGLVPALHPYKSLFY--ALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRM 229 (918)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 229 (918)
+++...|.. .++...-..-+. ..-..+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+..
T Consensus 98 LrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 98 LRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHH
Confidence 999988864 132221111111 2345688889999988887532 5566666666777899999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhH----HHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 043758 230 LKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTD----LIMISNYCREGEVDAALMLLNSKVSSNLA 305 (918)
Q Consensus 230 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 305 (918)
.+.+--.....|+..+- ..+.|+++.|.++..+++++|+...+..- +-.+++- ..|+ ...+....
T Consensus 171 lqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~Sa------ 239 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQSA------ 239 (459)
T ss_pred HhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHHH------
Confidence 88543334467877764 44678999999999999998865322211 0011100 0010 01111110
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHH
Q 043758 306 PSVHCYTVLIDALYKHNRLMEVDELYKKMLAN-RVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSIS 384 (918)
Q Consensus 306 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (918)
=+..+|.-...+.+.|+++.|.+.+.+|.-. ....|+.|...+.-.-. .+++..+
T Consensus 240 -l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g---------------------- 295 (459)
T KOG4340|consen 240 -LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEG---------------------- 295 (459)
T ss_pred -HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCcccc----------------------
Confidence 1233455555667788888888888777532 23345555432211100 0111111
Q ss_pred hhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHH
Q 043758 385 ATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQ 438 (918)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (918)
..-+.-+.+.+| ....++..++-.||+..-++-|-+++.+
T Consensus 296 -------------~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 296 -------------FEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred -------------HHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 111222233344 3347788888889999888888877654
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=4.2e-06 Score=88.29 Aligned_cols=261 Identities=11% Similarity=-0.006 Sum_probs=150.1
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCC-CCChh-hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH---
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNI-VPIKL-ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC--- 143 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 143 (918)
...+...|+.+.+...+....+..+ .++.. ........+...|++++|...++++.+.. |.+...+.. ...+.
T Consensus 13 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 13 ALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG 90 (355)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc
Confidence 3333445556665555655554432 12211 22233344567789999999999888764 334444442 22222
Q ss_pred -cCCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHH
Q 043758 144 -YKGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221 (918)
Q Consensus 144 -~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 221 (918)
..+....+.+.++.. .+..|+. .....+...+...|++++|...+++..+..+. +...+..+..+|...|++++
T Consensus 91 ~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 91 DFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred ccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHH
Confidence 234455555555441 2223333 23334556677889999999999998887544 66778888888999999999
Q ss_pred HHHHHHHHHhcCC-CCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CccHhhH-H--HHHHHHHhcCCHHHHHH
Q 043758 222 AMRLFFRMLKTGC-EPDS--YTCNTLIHGFFKMGLFDKGWVLYSQMSDWGF-QPNMVTD-L--IMISNYCREGEVDAALM 294 (918)
Q Consensus 222 A~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~~ 294 (918)
|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++..+...|....+.+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 9999988876432 1222 2355677788889999999999988764321 1111111 1 33333444454333333
Q ss_pred H--H-HHHhhCCCCCCcchHH--HHHHHHHhcCChhHHHHHHHHHHh
Q 043758 295 L--L-NSKVSSNLAPSVHCYT--VLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 295 ~--~-~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+ + ....... +.....+. ....+++..|+.+.|..++..+..
T Consensus 247 w~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 247 WEDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3 2 2111110 11112222 455666778888888888887765
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=6.5e-06 Score=76.29 Aligned_cols=359 Identities=11% Similarity=0.059 Sum_probs=209.9
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH-HHH
Q 043758 133 WSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS-LIN 211 (918)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~ 211 (918)
--+.+.+..+.+..+++.|++++..-.+ .-+.+....+.+.-+|-...++..|..+++++-.. .|...-|.. -..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~E--r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELE--RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3466777777788888888888877765 12235556666677777778888888888887765 233333332 234
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCH
Q 043758 212 GYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIH--GFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEV 289 (918)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 289 (918)
.+.+.+.+.+|+++...|... |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 556777888888888777642 22222122222 2335677777877777766433 444555555666778888
Q ss_pred HHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHH
Q 043758 290 DAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEF 369 (918)
Q Consensus 290 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 369 (918)
+.|.+-|+...+-+--.....||..+ +..+.|++..|++...++.+.|++.-+. +++-+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm------------------- 219 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGM------------------- 219 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccc-------------------
Confidence 88888888877654344556666544 4556778888888888887777653221 00000
Q ss_pred HhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCc
Q 043758 370 AKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNF-GYRPLV 448 (918)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 448 (918)
...|. | + ...++........+ ..++|.-...+.+.++++.|.+.+.+|.-. .-..|+
T Consensus 220 ~tegi--D--v-------rsvgNt~~lh~Sal-----------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 220 TTEGI--D--V-------RSVGNTLVLHQSAL-----------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred eeccC--c--h-------hcccchHHHHHHHH-----------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 00000 0 0 00000000000000 134555556677889999999998888522 123466
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043758 449 FTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMF 528 (918)
Q Consensus 449 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 528 (918)
.|...+.-.- -.+++.+...-+.-+.+.++ ....|+..++-.||++.-++.|-+++
T Consensus 278 vTLHN~Al~n-----------------------~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 278 VTLHNQALMN-----------------------MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred hhhhHHHHhc-----------------------ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 6665543221 12344455555555555544 35678888888999999999998887
Q ss_pred HHHHHCCC-CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 043758 529 KRMLKAGI-DPDEVFFTTMINGYLQNRKPIEACQLFEKMKE 568 (918)
Q Consensus 529 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 568 (918)
.+-..... -.+...|+.+=......-.+++|.+-++.+.+
T Consensus 334 AEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 334 AENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred hhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 65432110 12344444443333445677888777766543
No 97
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.87 E-value=0.00029 Score=76.24 Aligned_cols=497 Identities=12% Similarity=0.038 Sum_probs=251.7
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
.+.+.|+.++|..+++..-...+. |..+...+-..|...++.++|..+|+++.... |+......+..+|.|.+++.+
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 346778888888777776655544 67788888888899999999999999988663 556777777788888887776
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHhccC-c---------hHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCCh
Q 043758 151 VLEVVNIMRKKKGLVPALHPYKSLFYALCKNI-R---------TVEAESFAREMESQG-FYVDKLMYTSLINGYCSNRNM 219 (918)
Q Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~ 219 (918)
-.++-=++-+ .++-+.+.+=++++.+.+.- . ..-|.+.++.+.+.+ .--+..-...-....-..|++
T Consensus 129 qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 129 QQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred HHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 5554444443 23334444444554444321 1 123566666666654 111222222333445568889
Q ss_pred HHHHHHHHHH-HhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHH--------------
Q 043758 220 KMAMRLFFRM-LKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYC-------------- 284 (918)
Q Consensus 220 ~~A~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 284 (918)
++|++++..- -+.-..-+...-+.-+..+...+++.+..++-.++...| ..| |...++.+.
T Consensus 207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~ 282 (932)
T KOG2053|consen 207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-NDD---YKIYTDSVFKLLELLNKEPAEAA 282 (932)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-Ccc---hHHHHHHHHHHHHhcccccchhh
Confidence 9999988433 222112222333455667778889999999888888876 223 222222111
Q ss_pred --hcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccH
Q 043758 285 --REGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALY---KHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTEL 359 (918)
Q Consensus 285 --~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 359 (918)
..+..+...+...+.... ...-.|-+-+.+.. .-|+.+++.-.|-+-. |-+| .|..=+..+.-.-..
T Consensus 283 ~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~ 354 (932)
T KOG2053|consen 283 HSLSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNI 354 (932)
T ss_pred hhhhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCH
Confidence 112222223333322221 12223333333333 3366666655443221 2222 111111111111112
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccC-----ChHHHHH
Q 043758 360 QHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGG-----KYEKAYV 434 (918)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~ 434 (918)
+....+............ ...+++... ...+..-.-.| .-+.-+.
T Consensus 355 ~q~~~l~~~l~~~~~~~s------------------~~~k~l~~h------------~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 355 DQLKSLMSKLVLADDDSS------------------GDEKVLQQH------------LCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHHHHHHHhhccCCcch------------------hhHHHHHHH------------HHHHHHHHHhhccccCChHHHHH
Confidence 222222222222111110 011111000 00000000011 0111111
Q ss_pred HHHHHH---H------CCCCCCcccH---------HHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHH
Q 043758 435 CLFQLV---N------FGYRPLVFTC---------NTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQM 496 (918)
Q Consensus 435 ~~~~~~---~------~~~~~~~~~~---------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 496 (918)
++++.. + .++-|+..++ +.++..+-+.++.. .+-+|+-+++..
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~-------------------~l~eaI~LLE~g 465 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLT-------------------DLFEAITLLENG 465 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHH-------------------HHHHHHHHHHHH
Confidence 121111 1 1233444333 34555555555443 445677777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCc-
Q 043758 497 EVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGS- 575 (918)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 575 (918)
..... .|..+--.+++.|+-.|-+..|.++|+.+.-+.+..|+..|..+ ..+...|++..+...+....+.- ..+.
T Consensus 466 lt~s~-hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~~t~g~~~~~s~~~~~~lkfy-~~~~k 542 (932)
T KOG2053|consen 466 LTKSP-HNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRAETSGRSSFASNTFNEHLKFY-DSSLK 542 (932)
T ss_pred hhcCC-ccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHHHhcccchhHHHHHHHHHHHH-hhhhh
Confidence 66533 36777778899999999999999999988776666666555433 34555677777777766655431 1111
Q ss_pred hhHHHHHHHHHhcCChhHHHHHH---HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 576 YPYTALISGLVKKGMVDLGCMYL---DRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 576 ~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
.+-. +|..-.+.|.+.+..+.. +++.......-..+-+..++.....++.+.-...+..|.
T Consensus 543 E~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 543 ETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 1111 222233556655554432 223221111223344566667777777777777776664
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.8e-05 Score=77.90 Aligned_cols=429 Identities=14% Similarity=0.032 Sum_probs=212.3
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCc-chhHHHHHHHHHcCCChh
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLN-CWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 149 (918)
+..-.|+++.|...|-.++...+. +.+.|..-..+|...|++++|++--.+.++.. |+ ...|.....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHH
Confidence 335677888888888877777655 77777777777888888888777666655543 33 346777777777778888
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHH-----HHHhcCCChHHHHH
Q 043758 150 EVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLI-----NGYCSNRNMKMAMR 224 (918)
Q Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~ 224 (918)
+|+..|..-.+ ..+.+...+..+..++ ....+. +. ..-++..|..+. +.+...-.+...+.
T Consensus 88 eA~~ay~~GL~--~d~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 88 EAILAYSEGLE--KDPSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHhh--cCCchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 88888877765 1233344445555544 111111 11 111333333332 22222222222211
Q ss_pred HHHHHHhcCCCCChh-h---HHHHHHHHHhcCChhHHHHHHHHHHhCC-------CCccHhhHHHHHHHHHhcCCHHHHH
Q 043758 225 LFFRMLKTGCEPDSY-T---CNTLIHGFFKMGLFDKGWVLYSQMSDWG-------FQPNMVTDLIMISNYCREGEVDAAL 293 (918)
Q Consensus 225 ~~~~m~~~~~~p~~~-~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~ 293 (918)
.+. . .|+.. . ...++.+.......+.- .....+ ..|.. -.....-..++..+-.
T Consensus 154 ~~~----~--~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 154 IIQ----K--NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCK----QEHNGFPIIEDNTEER 218 (539)
T ss_pred Hhh----c--CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCccc----ccCCCCCccchhHHHH
Confidence 111 1 11111 1 11122222111111110 111111 11110 0000000000000000
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 043758 294 MLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIG 373 (918)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (918)
+. ..-..-.-.+.++..+..+++.|++.+....+.. -+..-++..-.++...+.+...+..-....+.|
T Consensus 219 ~~---------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g 287 (539)
T KOG0548|consen 219 RV---------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG 287 (539)
T ss_pred HH---------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh
Confidence 00 0011224456666667777777777777776643 233333334445555555555554444433333
Q ss_pred CCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHH
Q 043758 374 CGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNT 453 (918)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (918)
... +.-+.- -..++..+..+|.+.++++.++..|.+.+.....|+...-
T Consensus 288 re~---------------------rad~kl--------Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~-- 336 (539)
T KOG0548|consen 288 REL---------------------RADYKL--------IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSK-- 336 (539)
T ss_pred HHH---------------------HHHHHH--------HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHH--
Confidence 111 000000 0122333556777788999999999887755433332111
Q ss_pred HHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043758 454 LIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLK 533 (918)
Q Consensus 454 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 533 (918)
....+++....+...-.++.. ..-...-...+.+.|++..|+..|.++++
T Consensus 337 -----------------------------lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 337 -----------------------------LKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred -----------------------------HHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 112233333333332222221 11111225566777888888888888877
Q ss_pred CCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 534 AGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADG 605 (918)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 605 (918)
.. +-|...|.....+|.+.+.+..|+.-.+..++.+ ++....|..=..++....+++.|.+.|++.++.+
T Consensus 387 r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 387 RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 5567778888888888888888887777777653 2223333333344445567777777777777653
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=5.7e-06 Score=87.32 Aligned_cols=264 Identities=14% Similarity=0.022 Sum_probs=162.9
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHH---HHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVS---ILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG 146 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 146 (918)
..+...|++++|...++++.+..|. +..++.. ........+....+...++.. ....+........+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 3447889999999999999887644 4444442 122222345555555555541 1221223334455667888999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCC-CCh--hhHHHHHHHHhcCCChHHHH
Q 043758 147 FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFY-VDK--LMYTSLINGYCSNRNMKMAM 223 (918)
Q Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~ 223 (918)
++++|.+.++...+ . .+.+...+..+..++...|++++|...+++....... |+. ..|..+...+...|++++|+
T Consensus 129 ~~~~A~~~~~~al~-~-~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 129 QYDRAEEAARRALE-L-NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CHHHHHHHHHHHHh-h-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999987 2 2444567788888899999999999999998876432 222 24557888999999999999
Q ss_pred HHHHHHHhcCC-CCChhhH-H--HHHHHHHhcCChhHHHHH--HHHHHhCCC--CccHhhHHHHHHHHHhcCCHHHHHHH
Q 043758 224 RLFFRMLKTGC-EPDSYTC-N--TLIHGFFKMGLFDKGWVL--YSQMSDWGF--QPNMVTDLIMISNYCREGEVDAALML 295 (918)
Q Consensus 224 ~~~~~m~~~~~-~p~~~~~-~--~ll~~~~~~g~~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 295 (918)
.++++...... .+..... + .++.-+...|....+.++ +........ ............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999864422 1111111 1 223333344444333333 221111110 11122223566677889999999999
Q ss_pred HHHHhhCCCC------CCcchHHHHH--HHHHhcCChhHHHHHHHHHHhC
Q 043758 296 LNSKVSSNLA------PSVHCYTVLI--DALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 296 ~~~~~~~~~~------~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
++.+...... ....+-..++ -++...|++++|.+.+......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9887653211 0011222233 3455789999999998887653
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.86 E-value=2.1e-05 Score=74.63 Aligned_cols=309 Identities=11% Similarity=0.013 Sum_probs=186.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHH
Q 043758 417 TIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQM 496 (918)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 496 (918)
.-+...+...|++.+|+.-|...++. |+..|.++.+-- ..|...|+...|+.-+..+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRa-------------------T~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRA-------------------TVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHH-------------------HHHhhhcCCccchhhHHHH
Confidence 34566777889999999999888753 344444443211 1123344555566666666
Q ss_pred HHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--HH----------HH--HHHHHHHHcCCChHHHHH
Q 043758 497 EVRGPKPSVAI-YDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD--EV----------FF--TTMINGYLQNRKPIEACQ 561 (918)
Q Consensus 497 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~----------~~--~~l~~~~~~~~~~~~A~~ 561 (918)
++. +||... --.-...+.+.|.++.|..-|+..++...... .. .| ...+..+...|+...|+.
T Consensus 99 lel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 99 LEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred Hhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 653 455332 12234567788888888888888887632111 11 11 223445667899999999
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043758 562 LFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI 641 (918)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 641 (918)
....+++.. +-|...+..-..+|...|++..|+.-++...+.. ..+..++--+...+...|+.+.++...++.++ +
T Consensus 177 ~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--l 252 (504)
T KOG0624|consen 177 MITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--L 252 (504)
T ss_pred HHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--c
Confidence 999998863 4567777778889999999999998888877664 45667777788889999999999999999885 5
Q ss_pred CccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCC
Q 043758 642 EFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEF 721 (918)
Q Consensus 642 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 721 (918)
.||.-.+-..-..+-+.. + ....+....+.+++.++.+.-+.+.+...
T Consensus 253 dpdHK~Cf~~YKklkKv~-------------K-------------------~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVV-------------K-------------------SLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred CcchhhHHHHHHHHHHHH-------------H-------------------HHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 666443222111111000 0 00111122333555555555544443322
Q ss_pred CC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 722 MP---NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 722 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
.. ....+..+..++...+++.+|+....+.+. +.|| ..++.--..+|.-..+++.|+.-|+...+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 21 123344455555666666666666666665 3444 33454455566666666666666666665
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=4.6e-07 Score=92.14 Aligned_cols=249 Identities=14% Similarity=0.071 Sum_probs=187.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|++.+|.-+|+.+...+|. +..+|--|.......++=..|+..+++..+.. +.|..++-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 8999999999999999998866 78899999999999999999999999999887 668888999999999999999999
Q ss_pred HHHHHHHhcCCCC-----C---CcccHHHHHHHHhccCchHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCChHHHH
Q 043758 153 EVVNIMRKKKGLV-----P---ALHPYKSLFYALCKNIRTVEAESFAREMESQ-GFYVDKLMYTSLINGYCSNRNMKMAM 223 (918)
Q Consensus 153 ~~~~~~~~~~~~~-----~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 223 (918)
..|+.-++ ...+ + +...-+. ..+.....+....++|-++... +-.+|+..+..|.-.|.-.|++++|.
T Consensus 374 ~~L~~Wi~-~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 374 KMLDKWIR-NKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHH-hCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 98888765 1100 0 0000000 1112223345566666666554 33478999999999999999999999
Q ss_pred HHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 224 RLFFRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN-MVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 224 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
+.|+..+.. .|+ ...||.|...++...+.++|+..|.+.++. +|. +.+...|.-.|+..|.+.+|.+.|-..+.
T Consensus 451 Dcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999876 555 558999999999999999999999999986 454 45666677789999999999988866543
Q ss_pred ---CC------CCCCcchHHHHHHHHHhcCChhHHHHH
Q 043758 302 ---SN------LAPSVHCYTVLIDALYKHNRLMEVDEL 330 (918)
Q Consensus 302 ---~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~ 330 (918)
.+ ..++...|..|=.++...++.+.+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 11 112234666666666666666544443
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.2e-06 Score=88.52 Aligned_cols=400 Identities=10% Similarity=0.043 Sum_probs=237.3
Q ss_pred cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHcCCCh
Q 043758 478 EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD-EVFFTTMINGYLQNRKP 556 (918)
Q Consensus 478 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 556 (918)
...+..|+++.|+..|.+.+...+. |...|..-..+|.+.|++++|.+=-.+.++. .|+ ...|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4567899999999999999988655 8889999999999999999998877777765 444 57899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCCh---hHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcC------
Q 043758 557 IEACQLFEKMKENSVQPGSYPYTALISGLVKKGMV---DLGCMYLDRMLAD---GFVPNVVLYTALINHFLRAG------ 624 (918)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g------ 624 (918)
++|+.-|.+-++.. +.+...++.+..++...... -.--.++..+... ........|..++..+.+.-
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988874 34556667777766111000 0000111111110 00001112222222211100
Q ss_pred -CHHHHHHHHHHHHHCCCCccHHH-HHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHh
Q 043758 625 -EFEFASRLENLMVTNQIEFDLIA-YIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFS 702 (918)
Q Consensus 625 -~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (918)
+.....+..-.+. ++...... -....... ...+........+..++..+.-. ..........+.++..+
T Consensus 166 l~d~r~m~a~~~l~--~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~d~~ee~~-----~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 166 LNDPRLMKADGQLK--GVDELLFYASGIEILAS--MAEPCKQEHNGFPIIEDNTEERR-----VKEKAHKEKELGNAAYK 236 (539)
T ss_pred cccHHHHHHHHHHh--cCccccccccccccCCC--CCCcccccCCCCCccchhHHHHH-----HHHhhhHHHHHHHHHHH
Confidence 0000000000000 00000000 00000000 00000000000000000000000 11112223455667777
Q ss_pred CCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhH-------HHHHHHHHhcCC
Q 043758 703 NGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF-------CILINGHIAAGE 775 (918)
Q Consensus 703 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-------~~li~~~~~~g~ 775 (918)
..++..+++-+....+.. -++.-++....+|...|.+.+....-....+.|.. ...-| ..+..+|.+.++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 777788877777666554 45566666777888888777777666665554422 11122 223345666778
Q ss_pred HHHHHHHHHHHHhCCCCCCHHH-------------------------HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 043758 776 IDQAIGLFNQMNADGCVPDKTV-------------------------YNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK 830 (918)
Q Consensus 776 ~~~A~~~~~~~~~~~~~p~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (918)
++.|+..|++.+..-..|+... -..-...+.+.|++..|+..+.++++.. +-|.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da 392 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDA 392 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cchh
Confidence 8888888877665422232111 1112344667799999999999998753 3366
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 831 ATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 831 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
..|..-..||.+.|.+..|+.=.+..++.+ |+....|..-+.++....+|++|.+.|++.++.+
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 688888889999999999999999999887 8889999999999999999999999999988877
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=5.2e-07 Score=91.76 Aligned_cols=202 Identities=12% Similarity=0.002 Sum_probs=158.4
Q ss_pred HHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhH
Q 043758 56 IKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSY 135 (918)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 135 (918)
.+.++.-+|+..++......++=..|+..+.++++.++. +..+..+|.-.|...|.-.+|++.++.++...++ |
T Consensus 313 kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y 386 (579)
T KOG1125|consen 313 KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-----Y 386 (579)
T ss_pred hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----c
Confidence 445556667777777777778888889999999998866 7889999999999999999999999999765421 0
Q ss_pred HHHH-----------HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChh
Q 043758 136 NVLI-----------DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKL 204 (918)
Q Consensus 136 ~~l~-----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 204 (918)
..+. ..+.....+....++|-.+....+..+|...+..|.-.|--.|++++|..+|+..+...+. |..
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~ 465 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYL 465 (579)
T ss_pred hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHH
Confidence 0000 1222233445566666666654666688889999999999999999999999999998665 888
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY-TCNTLIHGFFKMGLFDKGWVLYSQMSD 266 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 266 (918)
.||.|...++...+.++|+..|.+.++. +|+-+ ...-|.-+|...|.+++|...|=.++.
T Consensus 466 lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 466 LWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 67643 555566679999999999988876643
No 104
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=3e-06 Score=84.97 Aligned_cols=221 Identities=8% Similarity=-0.052 Sum_probs=160.6
Q ss_pred cCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh-cHHHHHHHHHHHhhcCCCCcchhHH
Q 043758 58 FGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEE-KFLEAFDYFIKICNAGVDLNCWSYN 136 (918)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~ 136 (918)
.+++.+|...|..++...++.++|+.+++.+++.++. +..+|+....++...| ++++++..++++.... +-+..+|+
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~ 110 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWH 110 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhH
Confidence 4678889999999999999999999999999998855 5668887777777777 6799999999999876 55666787
Q ss_pred HHHHHHHcCCCh--hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 043758 137 VLIDGLCYKGFL--DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYC 214 (918)
Q Consensus 137 ~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 214 (918)
.....+.+.|+. +++++.++.+.+ .-+-+..+|+....++...|+++++...++++++.++. +..+|+....++.
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~ 187 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHH
Confidence 776666666653 677888888876 23455677888888888889999999999999988766 7777877665554
Q ss_pred cC---CCh----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 043758 215 SN---RNM----KMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM----GLFDKGWVLYSQMSDWGFQPNMVTDLIMISNY 283 (918)
Q Consensus 215 ~~---g~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (918)
+. |.. ++.+....++++.. +-|...|+.+...+... +...+|...+.+....+ +.+......|++.|
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~ 265 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLL 265 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHH
Confidence 43 222 45666666666553 33556777777666652 33455777777766543 34566666777777
Q ss_pred Hh
Q 043758 284 CR 285 (918)
Q Consensus 284 ~~ 285 (918)
+.
T Consensus 266 ~~ 267 (320)
T PLN02789 266 CE 267 (320)
T ss_pred Hh
Confidence 64
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=4.7e-07 Score=89.43 Aligned_cols=248 Identities=11% Similarity=0.020 Sum_probs=164.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|.+..++.-.+ ..............-+.+++...|+++.++.-. .... .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei---~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEI---KKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS----TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHh---ccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 56788888886666 333332223445557788888899887655433 3333 566666666666665545666666
Q ss_pred HHHHHHHhcCCCC-CCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 153 EVVNIMRKKKGLV-PALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 153 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
.-++.... .... .+.........++...|++++|.+++... .+.......+..|++.++++.|.+.++.|.+
T Consensus 87 ~~l~~~~~-~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 87 EELKELLA-DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHCCC-TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHH-hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66655543 2222 22222233335567889999999887643 2677777888999999999999999999987
Q ss_pred cCCCCChhhHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 043758 232 TGCEPDSYTCNTLIHGFF----KMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPS 307 (918)
Q Consensus 232 ~~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 307 (918)
. ..| .+...+..++. ....+.+|.-+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +.+
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 5 334 44444555443 234689999999998765 46788899999999999999999999999988766 456
Q ss_pred cchHHHHHHHHHhcCCh-hHHHHHHHHHHhC
Q 043758 308 VHCYTVLIDALYKHNRL-MEVDELYKKMLAN 337 (918)
Q Consensus 308 ~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 337 (918)
..+...++.+....|+. +.+.+.+.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 67777788888888887 6677787777653
No 106
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.69 E-value=0.0011 Score=72.04 Aligned_cols=223 Identities=13% Similarity=0.115 Sum_probs=152.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH--hhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRG--LFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
...+++..|+...+.+.+.. |+. .|..++.+ +.+.|+.++|..+++.....+ ..|..|...+-..|...+..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 45566777777788877765 332 23333433 578899999998888776655 4477889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC----------hH
Q 043758 151 VLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRN----------MK 220 (918)
Q Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~ 220 (918)
|..+|++... ..|+......++.+|.+.+++.+-.++--++-+. .+-++..+-++++.+.+.-. ..
T Consensus 96 ~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999976 5677888888999999999998877766666664 22255666666666654321 23
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 221 MAMRLFFRMLKTGCEP-DSYTCNTLIHGFFKMGLFDKGWVLYS-QMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNS 298 (918)
Q Consensus 221 ~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 298 (918)
-|.+.++.+.+.+-+. +..-...-+..+...|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555666666543111 22222233344567788999999883 333332234455555667788888999998888888
Q ss_pred HhhCC
Q 043758 299 KVSSN 303 (918)
Q Consensus 299 ~~~~~ 303 (918)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88876
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=0.00017 Score=86.98 Aligned_cols=311 Identities=9% Similarity=-0.009 Sum_probs=166.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCcH--HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCc----h
Q 043758 509 DAIIGHLCKEKRILEAEDMFKRMLKAG--I----DPDE--VFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGS----Y 576 (918)
Q Consensus 509 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~ 576 (918)
......+...|+++++...+......- . .+.. .....+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 344455567789999999888776421 0 1111 12222334556789999999999887763111111 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CccHHHH
Q 043758 577 PYTALISGLVKKGMVDLGCMYLDRMLAD----GF-VPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI---EFDLIAY 648 (918)
Q Consensus 577 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~ 648 (918)
..+.+...+...|++++|...+++.... |. .....++..+...+...|++++|...+++..+..- .++...
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~- 571 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM- 571 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH-
Confidence 3344555667789999999888887653 21 11123445566778889999999988887653100 000000
Q ss_pred HHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcC--CCC--C
Q 043758 649 IALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIE--FMP--N 724 (918)
Q Consensus 649 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~ 724 (918)
...........+...|+++.|...+....... ..+ .
T Consensus 572 ----------------------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 572 ----------------------------------------HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 00001112233444577777777766554321 111 1
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC-CcHHhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---H
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLR-PNQVTF-----CILINGHIAAGEIDQAIGLFNQMNADGCVPD---K 795 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~ 795 (918)
...+..+...+...|+.++|...+.+....... .....+ ...+..+...|+.+.|...+........... .
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 233444555666677777777777666432100 000001 0112333446677777776655443211111 0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKR----GFVPKK-ATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
..+..+..++...|++++|...+++.... |..++. .++..+..++.+.|+.++|...+.+++...
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11334555666777777777777766532 222211 234444456677777777777777777665
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.61 E-value=0.0011 Score=67.73 Aligned_cols=417 Identities=12% Similarity=0.017 Sum_probs=239.9
Q ss_pred CCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043758 445 RPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEA 524 (918)
Q Consensus 445 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 524 (918)
+-|..+|..+|+-+. ....+++...++++... .+.+...|..-+..-.+..+++..
T Consensus 17 P~di~sw~~lire~q-----------------------t~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~V 72 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQ-----------------------TQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESV 72 (656)
T ss_pred CccHHHHHHHHHHHc-----------------------cCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHH
Confidence 567888999988653 23667777888888765 455788899999999999999999
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHHc-CCChH----HHHHHHHHHH-hCCCCCCc-hhHHHHHHH---------HHhc
Q 043758 525 EDMFKRMLKAGIDPDEVFFTTMINGYLQ-NRKPI----EACQLFEKMK-ENSVQPGS-YPYTALISG---------LVKK 588 (918)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~----~A~~~~~~~~-~~~~~~~~-~~~~~l~~~---------~~~~ 588 (918)
+.+|.+.... ..+...|...++.-.+ .++.. ...+.|+-.+ +.|+.+-. ..|+..+.- +...
T Consensus 73 EkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~ 150 (656)
T KOG1914|consen 73 EKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN 150 (656)
T ss_pred HHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH
Confidence 9999998876 4567777777764433 23322 2333444333 34543322 345544433 2344
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHH------HHH-------HHHcCCHHHHHHHHHHHHH--CCCCccHHH------
Q 043758 589 GMVDLGCMYLDRMLADGFVPNVVLYTAL------INH-------FLRAGEFEFASRLENLMVT--NQIEFDLIA------ 647 (918)
Q Consensus 589 g~~~~a~~~~~~~~~~~~~~~~~~~~~l------~~~-------~~~~g~~~~a~~~~~~~~~--~~~~p~~~~------ 647 (918)
.+++...++++++...-+.-=...|+.. ++. --+...+..|.++++++.. .|+.-...+
T Consensus 151 QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 151 QRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred HHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 5677788889888765222112233222 111 1133456667777776642 222111111
Q ss_pred ---------HHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHH-------HHHhCCCh-----
Q 043758 648 ---------YIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFS-------AVFSNGKK----- 706 (918)
Q Consensus 648 ---------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~----- 706 (918)
|..++..=-.++-......+. .....-...+.+.--......+..... .+.+.|+.
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~---~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTML---TRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS 307 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh
Confidence 222222110000000000000 011111112222222222222222222 22233333
Q ss_pred --hHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHHHc-CCCCcHHhHHHHHHHHHhcCCHHHHH
Q 043758 707 --GTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVG---RMDDAYDHFQMMKRE-GLRPNQVTFCILINGHIAAGEIDQAI 780 (918)
Q Consensus 707 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 780 (918)
+++.++++...+.-..-+..+|..+.+.--..- ..+.....++++... ...|+. +|..+++.-.+..-++.|+
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHH
Confidence 334444444332222223333333332221111 255566667766543 234443 6777777777888889999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 781 GLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 781 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
.+|.++.+.+..+ ++..+++++.-|| .++.+-|.++|+--.++ +..++.--...+.-+.+.++-..|..++++.+..
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999987666 6777778877665 67889999999876653 3344444455666678889989999999999877
Q ss_pred CCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 860 DHVPC--LSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 860 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
+.+++ .++|...+.--..-|+.+.+.++-+++..
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66665 57888898888889999999888887754
No 109
>PLN02789 farnesyltranstransferase
Probab=98.61 E-value=1.8e-05 Score=79.44 Aligned_cols=223 Identities=9% Similarity=-0.000 Sum_probs=159.7
Q ss_pred hhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcC-ChHHHH
Q 043758 4 INRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALG-NIEDAL 82 (918)
Q Consensus 4 ~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g-~~~~A~ 82 (918)
.-.+.+.+|...|+.++...+...+|+.....+... .+..-.|...-+.++...| ++++++
T Consensus 31 ~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l------------------nP~~ytaW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 31 AYTPEFREAMDYFRAVYASDERSPRALDLTADVIRL------------------NPGNYTVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------CchhHHHHHHHHHHHHHcchhHHHHH
Confidence 345788899999999999888888888776654433 3333333333344444555 578899
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhchhcH--HHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 83 RHFDRLISKNIVPIKLACVSILRGLFAEEKF--LEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..++.+++.++. +..+|+....++.+.|+. ++++.+++++.+.. +-|..+|+...-++...|+++++++.++++++
T Consensus 93 ~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 93 DFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999998866 566788766666666653 67899999999887 56888999999999999999999999999997
Q ss_pred cCCCCCCcccHHHHHHHHhcc---Cch----HHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----CChHHHHHHHHHH
Q 043758 161 KKGLVPALHPYKSLFYALCKN---IRT----VEAESFAREMESQGFYVDKLMYTSLINGYCSN----RNMKMAMRLFFRM 229 (918)
Q Consensus 161 ~~~~~~~~~~~~~ll~~~~~~---g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m 229 (918)
.. +.+...|+....++.+. |+. ++........+...+. |...|+-+...+... ++..+|.+.+.+.
T Consensus 171 -~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 171 -ED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred -HC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 22 44556666666555443 222 4566677677776555 888999988888773 3456688888887
Q ss_pred HhcCCCCChhhHHHHHHHHHh
Q 043758 230 LKTGCEPDSYTCNTLIHGFFK 250 (918)
Q Consensus 230 ~~~~~~p~~~~~~~ll~~~~~ 250 (918)
.+.+ +.+......|+..++.
T Consensus 248 ~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hccc-CCcHHHHHHHHHHHHh
Confidence 6643 3355677777777764
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.55 E-value=3e-06 Score=83.80 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=84.9
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----Hc
Q 043758 733 LLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC----QA 808 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~ 808 (918)
..+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCc
Confidence 4555566667666665432 23334444555666677777777777666653 223 22233333322 12
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH-HHHHHH
Q 043758 809 GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHF-HEAQIV 887 (918)
Q Consensus 809 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 887 (918)
+.+.+|..+|+++.+. ..++..+++.+..++...|++++|.+.+++....+ |.++.+...++.+....|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 2566777777776543 45566666666666677777777777777766555 55666666666666666666 555566
Q ss_pred HHHHHhCC
Q 043758 888 LDVMHKRG 895 (918)
Q Consensus 888 ~~~~~~~~ 895 (918)
+..++...
T Consensus 259 l~qL~~~~ 266 (290)
T PF04733_consen 259 LSQLKQSN 266 (290)
T ss_dssp HHHCHHHT
T ss_pred HHHHHHhC
Confidence 66665543
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=2.4e-05 Score=87.91 Aligned_cols=218 Identities=10% Similarity=0.049 Sum_probs=166.7
Q ss_pred HHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC---cccHHHHHHHHhccCchHHHHHHHHHHHh
Q 043758 120 FIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA---LHPYKSLFYALCKNIRTVEAESFAREMES 196 (918)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 196 (918)
|++.+... |.+...|-..|......++.+.|+++++++.+...+.-. .-.|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444333 445567888888888999999999999998763222221 34677777777777878888899999887
Q ss_pred CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc---H
Q 043758 197 QGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN---M 273 (918)
Q Consensus 197 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~ 273 (918)
-- . .-..|..|...|.+.+.+++|-++|+.|.+. .......|...+..+.+.++-+.|..++.+.++. -|. .
T Consensus 1526 yc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv 1600 (1710)
T KOG1070|consen 1526 YC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHV 1600 (1710)
T ss_pred hc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhH
Confidence 51 1 3456888999999999999999999999875 2345568888888899998889999999888775 232 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 043758 274 VTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHL 344 (918)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 344 (918)
......+..-.+.|+.+.++.+|+...... |.-...|+..++.-.++|+.+.+..+|++....++.|-..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 344455666678899999999999988765 5567889999999999999999999999999888777554
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.51 E-value=8e-06 Score=75.16 Aligned_cols=160 Identities=14% Similarity=-0.024 Sum_probs=86.6
Q ss_pred HHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q 043758 101 VSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCK 180 (918)
Q Consensus 101 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 180 (918)
......+...|+-+....+........ +.+.......+....+.|++..|...+.+... .-++|..+|+.+..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 344444555555555555554433322 33444444455555666666666666666553 334555566666666666
Q ss_pred cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043758 181 NIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVL 260 (918)
Q Consensus 181 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 260 (918)
.|++++|..-|.+..+..+. ++...|.|...|.-.|+.+.|..++......+ .-|...-..+..+....|+++.|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 66666666666665554332 45555666666666666666666666655442 12344444455555566666666665
Q ss_pred HHHHH
Q 043758 261 YSQMS 265 (918)
Q Consensus 261 ~~~~~ 265 (918)
..+-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 55443
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=7.5e-06 Score=80.22 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=106.4
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ----VTFCILINGHIAAGEIDQAIGLFNQMNADGC-VPD-KTV 797 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~ 797 (918)
....+..++..+...|++++|...|+++... .|+. ..+..+..++...|++++|+..++++.+... .|. ...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3445555666666666777777766666553 2321 2445555666666777777777776665411 111 123
Q ss_pred HHHHHHHHHHc--------CChhHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHccCChhhHHH
Q 043758 798 YNTLLKGLCQA--------GRLSHVFSVFYSMHKRGFVPKKA-TY-----------------EHLLECFCANCLSIPAFN 851 (918)
Q Consensus 798 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~~~~~~A~~ 851 (918)
+..+..++... |++++|.+.++++.+. .|+.. .+ ..+...+.+.|++.+|..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 44444444443 5666667766666542 23221 11 134456889999999999
Q ss_pred HHHHHHhCC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 852 MFKEMIVHD--HVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 852 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+++++... .|..+..+..++.++.+.|++++|...++.+....
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999998663 12335789999999999999999999999887654
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.00046 Score=83.21 Aligned_cols=20 Identities=25% Similarity=-0.062 Sum_probs=13.2
Q ss_pred HHHHccCChHHHHHHHHHHH
Q 043758 421 SALCKGGKYEKAYVCLFQLV 440 (918)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~ 440 (918)
..+...|+.+.|..++....
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~ 680 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAP 680 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcC
Confidence 34445788888888766643
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.48 E-value=0.0024 Score=65.24 Aligned_cols=213 Identities=12% Similarity=0.075 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHhCCCCCCchhHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043758 556 PIEACQLFEKMKENSVQPGSYPYTALISGLV---KKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRL 632 (918)
Q Consensus 556 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 632 (918)
.+++..+++.....-..-+..+|..+...-- .-+..+....+++++...-...-..+|-.+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666554322223333333322111 1113556666777766553233345677788888888888999999
Q ss_pred HHHHHHCCCCc-cHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHH
Q 043758 633 ENLMVTNQIEF-DLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQK 711 (918)
Q Consensus 633 ~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 711 (918)
|.++.+.+..+ +..++++++.-+|. ++.+.|.+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs----------------------------------------------kD~~~Afr 422 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS----------------------------------------------KDKETAFR 422 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc----------------------------------------------CChhHHHH
Confidence 99999888888 77788888888886 66677777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 712 IVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ--VTFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
+|+.-. ..+..++.--..-++.+...++-..|..+|++...+++.|+. ..|..+|.--+..|+...++++-+++...
T Consensus 423 IFeLGL-kkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 423 IFELGL-KKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHH-HhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 776332 222334455566677777888888888888888877666654 37888887777788888888777666553
Q ss_pred -C--CCCCHHHHHHHHHHHHHcCChhHHH
Q 043758 790 -G--CVPDKTVYNTLLKGLCQAGRLSHVF 815 (918)
Q Consensus 790 -~--~~p~~~~~~~l~~~~~~~g~~~~A~ 815 (918)
. ..+....-..+++-|.-.+.+.--.
T Consensus 502 f~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 502 FPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred cchhhcCCCChHHHHHHHHhhcccccccH
Confidence 1 2222233345556666555544333
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=1.9e-05 Score=72.77 Aligned_cols=160 Identities=14% Similarity=-0.003 Sum_probs=109.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 043758 136 NVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS 215 (918)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 215 (918)
..+...+...|+-+....+...... ..+.+....+..+....+.|++.+|...|.+.....++ |...|+.+..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHH
Confidence 5555666667777777766666542 23344445555777777778888888888877776543 77788888888888
Q ss_pred CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHH
Q 043758 216 NRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALML 295 (918)
Q Consensus 216 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 295 (918)
.|+++.|..-|.+..+.- .-+...++.+.-.+.-.|+++.|..++......+ .-|..+-..+.......|+++.|+.+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888877777642 1233456667667777788888888877777664 33566666677777777888888777
Q ss_pred HHHHh
Q 043758 296 LNSKV 300 (918)
Q Consensus 296 ~~~~~ 300 (918)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 65544
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.44 E-value=8e-05 Score=83.98 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=183.7
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhc-CCCCc---chhHHHHHHHHHcCCChhHHHHHHH
Q 043758 81 ALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNA-GVDLN---CWSYNVLIDGLCYKGFLDEVLEVVN 156 (918)
Q Consensus 81 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (918)
-.+-|++.....|. +...|...+..+...++.++|.+++++++.. ++.-. ...|.+++......|.-+...++|+
T Consensus 1443 saeDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 34556677666644 5668999999999999999999999998742 22111 1356667766667788889999999
Q ss_pred HHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC
Q 043758 157 IMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEP 236 (918)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 236 (918)
++.+ +......|..|...|.+.+++++|-++|+.|.++-- .....|...+..+.++++.+.|..++.+..+. -|
T Consensus 1522 RAcq---ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lP 1595 (1710)
T KOG1070|consen 1522 RACQ---YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LP 1595 (1710)
T ss_pred HHHH---hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cc
Confidence 9987 344456788999999999999999999999999733 47889999999999999999999999999876 33
Q ss_pred C---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc--chH
Q 043758 237 D---SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSV--HCY 311 (918)
Q Consensus 237 ~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 311 (918)
. .......+..-.+.|+.+.+..+|+..+... +--...|+..+++-.+.|+.+.++.+|+++...+++|-- +.|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 3 2233344445568899999999999998764 445678999999999999999999999999998765532 234
Q ss_pred HHHHHHHHhcCChhHHHH
Q 043758 312 TVLIDALYKHNRLMEVDE 329 (918)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~ 329 (918)
...+..--..|+-..++.
T Consensus 1675 KkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHHHHhcCchhhHHH
Confidence 444443334455444333
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=1.7e-05 Score=83.33 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 576 YPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 576 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
..-..+...+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..+
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le 452 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE 452 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc
Confidence 333455666677777777777776653 455567777777777777666665543
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=3.4e-07 Score=56.15 Aligned_cols=32 Identities=44% Similarity=0.794 Sum_probs=15.5
Q ss_pred CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 755 GLRPNQVTFCILINGHIAAGEIDQAIGLFNQM 786 (918)
Q Consensus 755 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 786 (918)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=3.3e-07 Score=56.24 Aligned_cols=32 Identities=38% Similarity=0.690 Sum_probs=18.8
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 043758 198 GFYVDKLMYTSLINGYCSNRNMKMAMRLFFRM 229 (918)
Q Consensus 198 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 229 (918)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555566666666666666666666655555
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.39 E-value=3.1e-05 Score=75.89 Aligned_cols=57 Identities=11% Similarity=0.006 Sum_probs=30.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC--CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 245 IHGFFKMGLFDKGWVLYSQMSDWG--FQPNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 245 l~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
...+...|++++|...++...+.. -+.....+..+...+.+.|+.++|...++.+..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334555566666666666655442 011234555556666666666666666555543
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.35 E-value=5.4e-05 Score=70.59 Aligned_cols=120 Identities=6% Similarity=0.016 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-HccCC--hhh
Q 043758 773 AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECF-CANCL--SIP 848 (918)
Q Consensus 773 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~~~--~~~ 848 (918)
.++.+++...++..++.. +.+...|..+...|...|++++|...+++..+ +.| +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 456666666666666642 23567777777777777777777777777775 344 444555555553 45565 477
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 849 AFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 849 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
|...+++.++.+ |.+..++..++..+.+.|++++|...++++.+...
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777776 66777777777777777777777777777776653
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=2.3e-05 Score=68.90 Aligned_cols=123 Identities=9% Similarity=-0.075 Sum_probs=74.0
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 043758 747 HFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGF 826 (918)
Q Consensus 747 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 826 (918)
++++.++ +.|+. +..+..++...|++++|...|+.+.... +.+...|..+..++...|++++|+..+++..+. -
T Consensus 15 ~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~ 88 (144)
T PRK15359 15 ILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-D 88 (144)
T ss_pred HHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C
Confidence 4444444 33443 3344555666777777777777766632 124566666666777777777777777776652 1
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 827 VPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 827 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
+.+...+..+..++.+.|++++|...+...+... |.++..+..++.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 2245566666666677777777777777776665 555666655555443
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.32 E-value=5.6e-05 Score=70.48 Aligned_cols=152 Identities=10% Similarity=0.084 Sum_probs=103.0
Q ss_pred HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCh
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNM 219 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 219 (918)
..|...|++..+....+.+.. |. . .+...++.+++...+++..+.++. |...|..|...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~-----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD-----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC-----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 446667777666555433321 11 0 112255667777777777776554 778888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 043758 220 KMAMRLFFRMLKTGCEPDSYTCNTLIHGF-FKMGL--FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLL 296 (918)
Q Consensus 220 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 296 (918)
++|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887763 22445666666653 56566 478888888888775 446677777888888888888888888
Q ss_pred HHHhhCCCCCCc
Q 043758 297 NSKVSSNLAPSV 308 (918)
Q Consensus 297 ~~~~~~~~~~~~ 308 (918)
+.+.+.. +|+.
T Consensus 168 ~~aL~l~-~~~~ 178 (198)
T PRK10370 168 QKVLDLN-SPRV 178 (198)
T ss_pred HHHHhhC-CCCc
Confidence 8887765 3444
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.31 E-value=4.6e-05 Score=84.69 Aligned_cols=193 Identities=10% Similarity=-0.014 Sum_probs=119.1
Q ss_pred cHHHHHHHHHHcCCchhHHh----hhhhhhHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHhhchhcHHHHHHHH
Q 043758 47 SYSALMKKLIKFGQSQSALL----LYQNDFVALGNIEDALRHFDRLISK--NIVPIKLACVSILRGLFAEEKFLEAFDYF 120 (918)
Q Consensus 47 ~~~~l~~~l~~~~~~~~a~~----~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 120 (918)
..+-+-.++..-|..++|-. ...+++.+.|.+..+...+-+++.. ....++.++..+..+..+.|++++|..++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l 109 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVW 109 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 34445556666666665522 2233445566555555544443321 22234667777777777777777777777
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCC
Q 043758 121 IKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFY 200 (918)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 200 (918)
+.+.+.. |.+......++..+.+.+++++|+..+++... .-+.+......+..++.+.|++++|..+|+++...++.
T Consensus 110 ~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 110 RGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 7777664 44555666777777777777777777777765 22333445556666677777777777777777764332
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 043758 201 VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTL 244 (918)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (918)
+..++..+..++...|+.++|...|++..+.. .|.+..|+..
T Consensus 187 -~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 187 -FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 46677777777777777777777777776542 2333444443
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=8.4e-05 Score=78.33 Aligned_cols=185 Identities=12% Similarity=0.013 Sum_probs=97.4
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcc------cCccccCChH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDT------EGNCKWGNLD 487 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ 487 (918)
..|..+|.+|...|+..+|..+..+..+. +||+..|..+........-+++|.++.+..... ......++++
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 45777888888888888888888887773 688888877777665554455555554433221 1112234455
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 043758 488 SALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMK 567 (918)
Q Consensus 488 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 567 (918)
++.+.|+...+.++- ...+|-.+..+..++++++.|.+.|....... +-+...||.+-.+|.+.++..+|...+.+..
T Consensus 503 ~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 503 EADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 555555444443221 34444444444455555555555555544431 2233445555555555555555555555554
Q ss_pred hCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 568 ENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLA 603 (918)
Q Consensus 568 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 603 (918)
+.+ .-+-..|...+....+.|.++.|++.+.++..
T Consensus 581 Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 581 KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 443 22223333334444445555555555444443
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.28 E-value=4.7e-05 Score=66.95 Aligned_cols=109 Identities=8% Similarity=-0.049 Sum_probs=65.7
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 189 SFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
.+|++..+. ++..+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+.....+
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444444444 33334455556666666666666666666542 2344566666666666666666666666666654
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 269 FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
+.+...+..+..++...|++++|...|+......
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4455666666666666666666666666666543
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.00013 Score=81.11 Aligned_cols=165 Identities=9% Similarity=-0.046 Sum_probs=111.6
Q ss_pred CCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh-hhHH
Q 043758 164 LVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS-YTCN 242 (918)
Q Consensus 164 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~ 242 (918)
++.+...+..|..+..+.|.+++|+.+++...+..+. +...+..++.++.+.+++++|+..+++.... .|+. ...+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 5556777777777777888888888888888776443 5566777777777888888888888887765 3444 3556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcC
Q 043758 243 TLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHN 322 (918)
Q Consensus 243 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 322 (918)
.+..++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|+...+.. .+-...|+..+ +
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------H
Confidence 66667778888888888888887743 4446777777777888888888888887776543 23344444443 2
Q ss_pred ChhHHHHHHHHHHhCCC
Q 043758 323 RLMEVDELYKKMLANRV 339 (918)
Q Consensus 323 ~~~~a~~~~~~~~~~~~ 339 (918)
+...-...++++.-.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 231 DLNADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHHHcCcccc
Confidence 33444555555544433
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.26 E-value=0.00045 Score=77.72 Aligned_cols=272 Identities=11% Similarity=0.088 Sum_probs=143.6
Q ss_pred cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 043758 131 NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSL 209 (918)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (918)
+...+..++..+...+++++|.++.+...+ ..|+. ..|..+...+.+.+++..+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 445666666666667777777777776554 23332 2222222244444443333322 33
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCH
Q 043758 210 INGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEV 289 (918)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 289 (918)
+.......++.-+..+...|... .-+...+..+..+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33333344443444444444443 2234466666777777777777777777777766 55666777777777766 77
Q ss_pred HHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHH
Q 043758 290 DAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEF 369 (918)
Q Consensus 290 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 369 (918)
++|++++...... ++..+++..+.+++.++.... |+...+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~----------------------- 205 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDF----------------------- 205 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchH-----------------------
Confidence 7777777665531 555667777777777776532 222111
Q ss_pred HhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhc-CCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCc
Q 043758 370 AKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKS-DPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLV 448 (918)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 448 (918)
...+.+.+... +...-..++-.+-..|-..++|++++.+|+.+++.. +-+.
T Consensus 206 ---------------------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~ 257 (906)
T PRK14720 206 ---------------------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNN 257 (906)
T ss_pred ---------------------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-Ccch
Confidence 01111111111 111112445555666777778888888888887753 3344
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhcccCcccc-CChHHHHHHHHHHH
Q 043758 449 FTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKW-GNLDSALDILDQME 497 (918)
Q Consensus 449 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~ 497 (918)
....-++.+|. +.+.. ...++...+....... ..+..++.-|+...
T Consensus 258 ~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 258 KAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred hhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 55555666554 22222 2223332222222222 45567777776654
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=0.00025 Score=71.53 Aligned_cols=127 Identities=17% Similarity=0.008 Sum_probs=78.7
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA-LHPYKSLFYA 177 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~ 177 (918)
.+......+...|++++|+..++.+.... |.|.+.+......+.+.++.++|.+.++.+.. ..|+ ......+..+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHH
Confidence 44455555566667777777776655442 34444444555666667777777777777665 3344 3444556666
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRML 230 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 230 (918)
|.+.|++.+|.+++++.....+. |+..|..|..+|...|+..++.....++.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 66777777777777766665444 66677777777777776666666665554
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00039 Score=70.20 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=88.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF-CILINGHIAAGEIDQAIGLFNQMNADGCVPD-KTVYNTLLKG 804 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 804 (918)
.+.-....+...|..++|...++.++.. .||...| ......+...++.++|.+.++++... .|+ ....-.+..+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 3333344445556677777777776653 3444333 33344566677777777777776663 343 3445556666
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEA 884 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 884 (918)
|.+.|+..+|+.++++.... .+-++..|..|..+|...|+..+|.....+ .|.-.|+|++|
T Consensus 384 ll~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A 444 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQA 444 (484)
T ss_pred HHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHH
Confidence 77777777777777666543 344555666666677777766666444333 34566778888
Q ss_pred HHHHHHHHhCC
Q 043758 885 QIVLDVMHKRG 895 (918)
Q Consensus 885 ~~~~~~~~~~~ 895 (918)
...+...+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 88887776654
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.19 E-value=0.00078 Score=75.84 Aligned_cols=168 Identities=10% Similarity=0.085 Sum_probs=111.8
Q ss_pred CchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-HHhcCChhhHHHHHHHhhcccCccccCChHHH
Q 043758 411 LANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKC-FYQVGFLEGANAIVELMQDTEGNCKWGNLDSA 489 (918)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 489 (918)
.+..+|..|+..+...+++++|..+.+...+. .|+...+..+... +.+.++...+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~--------------------- 85 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSN--------------------- 85 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhh---------------------
Confidence 34478999999999999999999999977765 5666555444333 33333222111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043758 490 LDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN 569 (918)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 569 (918)
. ..++.......++.....+...+.+. .-+...+..+..+|-+.|+.++|..+|+++++.
T Consensus 86 -----------------l-v~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~ 145 (906)
T PRK14720 86 -----------------L-LNLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA 145 (906)
T ss_pred -----------------h-hhhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 1 13444445555555555555566554 234456677777788888888888888888877
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 570 SVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 570 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
. +-|..+.|.+...|... ++++|.+++.+.+.. +....++..+.++|.++..
T Consensus 146 D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 146 D-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred C-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 6 45667777777777777 788888777776543 5555677777777777765
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00035 Score=63.92 Aligned_cols=187 Identities=15% Similarity=0.155 Sum_probs=109.1
Q ss_pred ChhHHHHHHHHHHh---cC-CCCCh-hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHHH
Q 043758 705 KKGTVQKIVLKVKD---IE-FMPNL-YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAAGEIDQ 778 (918)
Q Consensus 705 ~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~ 778 (918)
+.+++.+++..+.. .| ..++. ..|..++-+....|+.+.|...++.+... + |... .-..-..-+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhh
Confidence 44555555554442 22 23333 34444555555666777777777776654 2 3322 11111122345567777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHh
Q 043758 779 AIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 779 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 858 (918)
|+++++.+++.+ +.|..++-.-+-.....|+--+|++-+....+. +..|...|.-+...|...|++++|.--+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777776653 234455555555556666666777776666654 566777777777777777777777777777765
Q ss_pred CCCCCCcccHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Q 043758 859 HDHVPCLSNCNWLLNILCQEK---HFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 859 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 896 (918)
.. |-++..+-.++..+.-.| +++-|++.|.+..+...
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 54 556666666666655444 55666677776666553
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00076 Score=62.33 Aligned_cols=217 Identities=11% Similarity=0.063 Sum_probs=113.6
Q ss_pred HHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCch
Q 043758 105 RGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRT 184 (918)
Q Consensus 105 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 184 (918)
+-+.-.|++..++..-...... +.+...-..+.++|...|.+...+ ..+.. +-.|.......+......-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~--~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKE--GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccc--ccCChHHHHHHHHHHhhCcchh
Confidence 3445567776666655544322 133334444455565555443221 11111 1111111111111111222333
Q ss_pred HH-HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043758 185 VE-AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQ 263 (918)
Q Consensus 185 ~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 263 (918)
+. ..++.+.+.......+......-...|+..|++++|++...... +......=..++.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 23344444444333222223333446777788888877766511 112222223345666777778888888
Q ss_pred HHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 264 MSDWGFQPNMVTDLIMISNYCR----EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
|.+.. +..|.+-|..++.+ .+.+.+|.-+|+++.++- +|+..+.+-...++...|++++|..+++..+...
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 87642 44555555555543 346777888888877643 5777777777777788888888888887777653
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=6.4e-05 Score=66.05 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=75.1
Q ss_pred CCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHH
Q 043758 59 GQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVL 138 (918)
Q Consensus 59 ~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (918)
+....+...+...+...|++++|.+.|+.+...++. ++..|..+...+...|++++|...++.....+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 333344444445556777777777778877776643 66677788888888888888888888877665 5566677777
Q ss_pred HHHHHcCCChhHHHHHHHHHHhcCCCCCCcccH
Q 043758 139 IDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPY 171 (918)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (918)
...+...|+++.|.+.|+...+ ..|+...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~ 121 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE---ICGENPEY 121 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hccccchH
Confidence 7788888888888888888776 34444443
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0021 Score=59.55 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=80.8
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 733 LLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIA----AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQA 808 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 808 (918)
..+.+..+.+-|.+.+++|.+- -+..+.+-|..+|.+ .+.+.+|.-+|++|.++ ..|++.+.+....++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 4445666778888888888763 244566666666543 34677788888888764 667777888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhh-HHHHHHHHHh
Q 043758 809 GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIP-AFNMFKEMIV 858 (918)
Q Consensus 809 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~ 858 (918)
|++++|..++++...+. .-++.++..++.+-...|...+ ..+.+.++..
T Consensus 221 ~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 88888888888887653 3456666666665556665544 4455555543
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.12 E-value=0.00012 Score=62.91 Aligned_cols=128 Identities=13% Similarity=0.017 Sum_probs=98.5
Q ss_pred ccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHc-CCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 043758 22 NSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKF-GQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLAC 100 (918)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 100 (918)
..|+|+++..+..++..=| +...+ .... ++.-+.+.-++-.+...|++++|..+|+.+...++. +...|
T Consensus 3 ~~~~~~~~~~~~~f~~~Gg------sl~~l---~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~ 72 (157)
T PRK15363 3 KDPTLQQAHDTMRFFRRGG------SLRML---LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYW 72 (157)
T ss_pred CCchhhhHHHHHHHHHcCC------cHHHH---HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 4567777776655554422 11111 1112 233344455555668999999999999999988765 67788
Q ss_pred HHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 101 VSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 101 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..+..++...|++++|+..|....... +.|+.++..+..++...|+.+.|++.|+..+.
T Consensus 73 ~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 73 FRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999999999999887 57888999999999999999999999999887
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0015 Score=59.95 Aligned_cols=161 Identities=12% Similarity=-0.001 Sum_probs=92.8
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKN 181 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 181 (918)
.+.-+....|+.+.|...++++...- +-+..+-..-.-.+-..|.+++|+++++.+.+ .-+.|..++..-+.+.-..
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHHHHHc
Confidence 44444555666777777776665542 33333333333334456677777777777765 2244555555555555556
Q ss_pred CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcC---ChhHH
Q 043758 182 IRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY-TCNTLIHGFFKMG---LFDKG 257 (918)
Q Consensus 182 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g---~~~~a 257 (918)
|+.-+|.+-+....+.- ..|...|.-+...|...|++++|.-.++++.-. .|... .+..+...+.-.| +.+.+
T Consensus 134 GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred CCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66666766666666653 337777777777777777777777777777654 34333 3334444333222 45556
Q ss_pred HHHHHHHHhCC
Q 043758 258 WVLYSQMSDWG 268 (918)
Q Consensus 258 ~~~~~~~~~~~ 268 (918)
..+|.+.++..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 67777766553
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=8.6e-05 Score=75.97 Aligned_cols=121 Identities=14% Similarity=0.089 Sum_probs=69.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCL 845 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 845 (918)
|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|++++++..+. .+-+...+..-..-|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3444445556666666666665532 33 3334555555566666666666666532 12233444444445566666
Q ss_pred hhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 846 SIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMH 892 (918)
Q Consensus 846 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 892 (918)
++.|++..+++.... |.+..+|..|+.+|.+.|++++|+-.++.+-
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666654 5556666666666666666666666666553
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.05 E-value=7.3e-05 Score=65.67 Aligned_cols=98 Identities=14% Similarity=0.017 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL 875 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (918)
.....+...+...|++++|.+.++...+.+ +.+...+..+..++.+.|++++|...++.....+ |.++..+..++.+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555556666666666666655421 2244455555555566666666666666655554 55566666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 043758 876 CQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 876 ~~~g~~~~A~~~~~~~~~~~ 895 (918)
...|++++|...++...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 66666666666666665554
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00016 Score=64.03 Aligned_cols=125 Identities=12% Similarity=0.049 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----HHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCV--PDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA----TYEH 835 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~ 835 (918)
.|..++..+ ..++...+...++.+...... ......-.+...+...|++++|...|+...+.. |+.. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHH
Confidence 344444444 367777777777777775211 112333345566777888888888888887654 3332 3444
Q ss_pred HHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 836 LLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVM 891 (918)
Q Consensus 836 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 891 (918)
+...+...|++++|+..++..... +..+..+..++++|.+.|++++|+..|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566778888888888888663321 344667788888999999999998888754
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.83 E-value=0.00043 Score=70.95 Aligned_cols=122 Identities=20% Similarity=0.165 Sum_probs=73.7
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043758 173 SLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG 252 (918)
Q Consensus 173 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 252 (918)
+++..+...++++.|..+|+++.+. ++.....++..+...++..+|.+++.+..+.. +.+......-...+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER----DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3444455556677777777777766 33344456666666666667777766666542 223444444455566666
Q ss_pred ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 253 LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
+++.|..+.+++.+.. +.+-.+|..|..+|...|+++.|+..++.++
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6677777777666653 3334466666677777777777766666555
No 143
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.80 E-value=0.052 Score=54.73 Aligned_cols=363 Identities=13% Similarity=0.134 Sum_probs=187.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCC----CCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHH
Q 043758 417 TIYISALCKGGKYEKAYVCLFQLVNFGYR----PLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDI 492 (918)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 492 (918)
+..++.+...|++.++..+++++...-.+ -+..+|+.++-.++++ .
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS------------------------------Y 181 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS------------------------------Y 181 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH------------------------------H
Confidence 56677888899999999888888754333 5667777765555432 2
Q ss_pred HHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcC--CChHHHHHHHHHHH
Q 043758 493 LDQMEVR---GPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQN--RKPIEACQLFEKMK 567 (918)
Q Consensus 493 ~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~ 567 (918)
|-++.+. .+-|+ |--++..|.+.=. .++.-.-..+-|.......++....-. ....--.++++.-.
T Consensus 182 fLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 182 FLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 2222221 12222 2223333332211 011100001223333333333322211 11222234444444
Q ss_pred hCCCCCCchh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043758 568 ENSVQPGSYP-YTALISGLVKKGMVDLGCMYLDRMLADGFV----PNVVLYTALINHFLRAGEFEFASRLENLMVTNQIE 642 (918)
Q Consensus 568 ~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 642 (918)
+..+.|+... ...++..+.. +.+++..+-+.+...... -=..++..++....+.++...|.+.+..+.. ..
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ld 328 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LD 328 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cC
Confidence 4555565432 2333333333 555555555555433111 1234677888888888999988888887763 44
Q ss_pred ccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHH----hCCChhHHHHHHHHHHh
Q 043758 643 FDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVF----SNGKKGTVQKIVLKVKD 718 (918)
Q Consensus 643 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~a~~~~~~~~~ 718 (918)
|+...-..++-.- ..+.+..+ ..-+...-..+|+....
T Consensus 329 p~~svs~Kllls~--------------------------------------~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs 370 (549)
T PF07079_consen 329 PRISVSEKLLLSP--------------------------------------KVLQDIVCEDDESYTKLRDYLNLWEEIQS 370 (549)
T ss_pred CcchhhhhhhcCH--------------------------------------HHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 5444322222110 00111111 01233444555555553
Q ss_pred cCCCCChhhHHHHH---HHHHccC-ChhHHHHHHHHHHHcCCCC-cHHhHHHHHH----HHH---hcCCHHHHHHHHHHH
Q 043758 719 IEFMPNLYLYNDIF---LLLCGVG-RMDDAYDHFQMMKREGLRP-NQVTFCILIN----GHI---AAGEIDQAIGLFNQM 786 (918)
Q Consensus 719 ~~~~~~~~~~~~l~---~~~~~~g-~~~~A~~~~~~m~~~~~~p-~~~~~~~li~----~~~---~~g~~~~A~~~~~~~ 786 (918)
..+... ..-.-|+ .-+-+.| .-++|+++++...+ +.| |..+-|.+.. +|. ....+..-+.+-+-+
T Consensus 371 ~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi 447 (549)
T PF07079_consen 371 YDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI 447 (549)
T ss_pred hcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 332221 1111222 2233344 47888999988877 333 3333332221 222 122333334444444
Q ss_pred HhCCCCC----CHHHHHHHHHH--HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 787 NADGCVP----DKTVYNTLLKG--LCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 787 ~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
.+.|++| +...-|.+.++ +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|...+..+
T Consensus 448 ~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L---- 521 (549)
T PF07079_consen 448 TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL---- 521 (549)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC----
Confidence 4457777 33555666655 4578899988877777765 7888889988888888889999999998875
Q ss_pred CCCCcccHHH
Q 043758 861 HVPCLSNCNW 870 (918)
Q Consensus 861 ~~~~~~~~~~ 870 (918)
||+..+++.
T Consensus 522 -P~n~~~~ds 530 (549)
T PF07079_consen 522 -PPNERMRDS 530 (549)
T ss_pred -CCchhhHHH
Confidence 777776654
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.79 E-value=3.8e-05 Score=48.24 Aligned_cols=33 Identities=42% Similarity=0.826 Sum_probs=20.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD 237 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 237 (918)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666555
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.74 E-value=5.3e-05 Score=47.54 Aligned_cols=33 Identities=33% Similarity=0.715 Sum_probs=18.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN 759 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 759 (918)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.00057 Score=58.81 Aligned_cols=96 Identities=9% Similarity=-0.038 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNI 874 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 874 (918)
.....+...+...|++++|.++|+-+.. +.| +..-|-.|..++...|++++|+..+..+...+ |.|++.+..++.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3444455556666777777777666654 334 33345556666666677777777777766666 6667777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 043758 875 LCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 875 ~~~~g~~~~A~~~~~~~~~~ 894 (918)
|...|+.+.|++-|+.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777665543
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.0013 Score=58.30 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHH
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS----YTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIM 279 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 279 (918)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+......++ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33344333 3666677777777776652 232 1223344556667777777777777776542222 1234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 280 ISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKM 334 (918)
Q Consensus 280 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (918)
...+...|++++|...++..... ......+....+++...|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66677777777777777654332 233445556667777777777777777653
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.70 E-value=3.3e-05 Score=60.63 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=49.5
Q ss_pred cCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 043758 808 AGRLSHVFSVFYSMHKRGF-VPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQI 886 (918)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 886 (918)
.|++++|+.+++++.+..- .|+...+-.+..++++.|++++|..++++ ...+ +.+......++.+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777765321 11333445566677777777777777766 3333 3445566666777777777777777
Q ss_pred HHHH
Q 043758 887 VLDV 890 (918)
Q Consensus 887 ~~~~ 890 (918)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.043 Score=58.10 Aligned_cols=177 Identities=13% Similarity=0.009 Sum_probs=102.0
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCC--------CCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCC
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLV--------PALHPYKSLFYALCKNIRTVEAESFAREMESQGFY 200 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 200 (918)
.|.+..|..+.......-.++.|...|-+...=.|+. .+.....+=+ -+--|++++|++++-++.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhh--
Confidence 4667778777766655555666665554432201110 0001111111 223478888888887777652
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHH
Q 043758 201 VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD---SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDL 277 (918)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (918)
.-|..+.+.|++-...++++.-- .+ ..| ...|+.+...++....|++|.++|..-... .
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~-~d-~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e 826 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGG-SD-DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------E 826 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccC-CC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------H
Confidence 23556667777777776664311 11 111 236777777777777888888877754321 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 043758 278 IMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYK 332 (918)
Q Consensus 278 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 332 (918)
..+.++.+..++++-+.+-..+. -+....-.+.+++...|.-++|.+.|-
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 24555666666666555554443 345566677788888888888887763
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.68 E-value=7e-05 Score=46.53 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=17.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEP 236 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 236 (918)
+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.66 E-value=7.5e-05 Score=46.38 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=16.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP 758 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 758 (918)
+|+.++.+|++.|+++.|..+|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.61 E-value=0.011 Score=59.28 Aligned_cols=124 Identities=12% Similarity=0.111 Sum_probs=67.3
Q ss_pred HHHHHHcc-CChhHHHHHHHHHHHc----CCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCH-HH
Q 043758 731 IFLLLCGV-GRMDDAYDHFQMMKRE----GLRPN--QVTFCILINGHIAAGEIDQAIGLFNQMNADGC-----VPDK-TV 797 (918)
Q Consensus 731 l~~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~-~~ 797 (918)
+...|... |++++|++.|++..+. | .+. ..++..+...+.+.|++++|.++|+++..... +.+. ..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 34566666 7777777777765442 2 111 12455566677788888888888887766421 1122 22
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHccCChhhHHHHHHHH
Q 043758 798 YNTLLKGLCQAGRLSHVFSVFYSMHKR--GFVPKK--ATYEHLLECFCANCLSIPAFNMFKEM 856 (918)
Q Consensus 798 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~ 856 (918)
+-..+-++...|+...|.+.+++.... ++..+. .....|+.+ +..|+.+.-...+...
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A-~~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA-YEEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH-HHTT-CCCHHHHCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-HHhCCHHHHHHHHHHH
Confidence 333344566678888888888887643 222222 245666666 5666655544444443
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.61 E-value=0.015 Score=56.28 Aligned_cols=181 Identities=9% Similarity=0.032 Sum_probs=100.2
Q ss_pred HHhhhhhhh--HhcCChHHHHHHHHHHHhCCCCCChh--hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 043758 64 ALLLYQNDF--VALGNIEDALRHFDRLISKNIVPIKL--ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLI 139 (918)
Q Consensus 64 a~~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 139 (918)
+.+.|..+. ...|++++|.+.|+.+....+.+... +...++.++.+.+++++|+..+++..+..+......+...+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 334444333 67789999999999988876543211 22456677888899999999999888765332233333333
Q ss_pred HHHHc--CC---------------Ch---hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCC
Q 043758 140 DGLCY--KG---------------FL---DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGF 199 (918)
Q Consensus 140 ~~~~~--~g---------------~~---~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 199 (918)
.+.+. .+ |. ..|+..|+.+++ .-|+. .-..+|...+..+...
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---~yP~S-------------~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---GYPNS-------------QYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---HCcCC-------------hhHHHHHHHHHHHHHH--
Confidence 33321 11 11 234445555544 11222 1123333333333222
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 200 YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG--CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQM 264 (918)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 264 (918)
=...--.+...|.+.|.+..|..-|+.+.+.- .+........+..++...|..++|..+...+
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11111244556777777777777777777641 1122234556667777777777777666554
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.00073 Score=54.99 Aligned_cols=96 Identities=9% Similarity=-0.012 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 043758 798 YNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ 877 (918)
Q Consensus 798 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (918)
+..+...+...|++++|...+++..+. .+.+...+..+..++...+++++|...++...... +.+...+..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666667777777777766542 12233455556666666777777777777766654 5555677777777777
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 043758 878 EKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 878 ~g~~~~A~~~~~~~~~~~ 895 (918)
.|++++|...++...+.+
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 777777777777665543
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.59 E-value=0.00011 Score=57.66 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=59.8
Q ss_pred cCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHH
Q 043758 75 LGNIEDALRHFDRLISKNIV-PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLE 153 (918)
Q Consensus 75 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (918)
+|+++.|+..|+++.+..+. |+...+..++.+|.+.|++++|+.++++ ...+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57888899999998887652 3455666788999999999999999988 3332 2233455566788889999999999
Q ss_pred HHHH
Q 043758 154 VVNI 157 (918)
Q Consensus 154 ~~~~ 157 (918)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8876
No 156
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.59 E-value=0.093 Score=51.83 Aligned_cols=301 Identities=19% Similarity=0.173 Sum_probs=190.0
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH--HHHcCCChHHHHHHHHHHHhCCCCCCchh--HHH
Q 043758 507 IYDAIIGHLCK--EKRILEAEDMFKRMLKAGIDPDEVFFTTMIN--GYLQNRKPIEACQLFEKMKENSVQPGSYP--YTA 580 (918)
Q Consensus 507 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ 580 (918)
-|.+|-.++.. .|+-..|.++-.+..+. +..|....-.++. +-.-.|+++.|.+-|+.|... |.... +..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 34555555443 47788887777665532 2334444444444 344579999999999999863 33322 233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCccHHH--HHHHHHHHhh
Q 043758 581 LISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQ-IEFDLIA--YIALVSGVCR 657 (918)
Q Consensus 581 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~--~~~ll~~~~~ 657 (918)
|.-.--+.|+.+.|.++-+.....- +--.-.+...+...+..|+|+.|+++++.-.+.. +.++..- -..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3334456899999999988877652 2234577888899999999999999998876544 4454332 2234433222
Q ss_pred hcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 043758 658 RITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCG 737 (918)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 737 (918)
..-... -....+...+..+..+...+........+++.|+..++-++++.+=+....|++ + ..|.+
T Consensus 239 s~ldad--------p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a----~lY~~ 304 (531)
T COG3898 239 SLLDAD--------PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A----LLYVR 304 (531)
T ss_pred HHhcCC--------hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H----HHHHH
Confidence 111000 123345556666777777777888888899999999998888877655444432 2 23444
Q ss_pred cCChhHHHHHHHHHHHc-CCCCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChhHH
Q 043758 738 VGRMDDAYDHFQMMKRE-GLRPNQV-TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC-QAGRLSHV 814 (918)
Q Consensus 738 ~g~~~~A~~~~~~m~~~-~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 814 (918)
..-.+.++.-+++..+. .++||.. +...+..+-...|++..|..--+.... ..|....|-.|.+.-. ..|+-.++
T Consensus 305 ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~v 382 (531)
T COG3898 305 ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKV 382 (531)
T ss_pred hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHH
Confidence 44444455444443321 2556543 556667777788888888877766655 5677777777777654 44888888
Q ss_pred HHHHHHHHhCCCCC
Q 043758 815 FSVFYSMHKRGFVP 828 (918)
Q Consensus 815 ~~~~~~~~~~~~~p 828 (918)
...+.+..+..-.|
T Consensus 383 R~wlAqav~APrdP 396 (531)
T COG3898 383 RQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHhcCCCCC
Confidence 88888887654334
No 157
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.59 E-value=0.0067 Score=52.78 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=104.9
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC---CHHH
Q 043758 756 LRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP---KKAT 832 (918)
Q Consensus 756 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~ 832 (918)
.-|+...--.|..+....|+..+|...|++...--+--|....-.+..+....++...|...++.+.+.. | ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 3566666667888889999999999999988875555577888888888888999999999998887642 2 2234
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 833 YEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 833 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
.-.+..+|...|++.+|+..++.++.. -|++......+..+.++|+..+|..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444556778889999999999988875 78888888888999999988887766655544
No 158
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.54 E-value=0.0018 Score=66.79 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=70.1
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC-CCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHH
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK-GLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYT 207 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (918)
+.+......++..+....+++.+..++-+.+... ....-..+..++++.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3444455555666666666666666666655410 111223445566666666666666666666666666666666666
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043758 208 SLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM 251 (918)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 251 (918)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666655544444445555444444433
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.088 Score=52.50 Aligned_cols=270 Identities=14% Similarity=0.047 Sum_probs=159.7
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHH
Q 043758 481 CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEAC 560 (918)
Q Consensus 481 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 560 (918)
.+..++..|+..+...++..+. +..-|..-...+...+++++|.--.+.-.+.. +-........-.++...++..+|.
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHH
Confidence 3456778888888888887555 56667777777888888888876665554421 011112222222333333333333
Q ss_pred HHHH------------HHH---hCCC-CCCchhHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 561 QLFE------------KMK---ENSV-QPGSYPYTAL-ISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRA 623 (918)
Q Consensus 561 ~~~~------------~~~---~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (918)
+.++ ... .... +|.-.++..+ ..++.-.|+.++|.++--...+.. ..+......-..++.-.
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccc
Confidence 2222 221 1111 2323344333 234556899999998888877653 22322222222345567
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhC
Q 043758 624 GEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSN 703 (918)
Q Consensus 624 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (918)
++.+.+...|++.+. ..|+.....++-..+-. ......-.+..++.
T Consensus 217 ~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~--------------------------------le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 217 DNADKAINHFQQALR--LDPDHQKSKSASMMPKK--------------------------------LEVKKERGNDAFKN 262 (486)
T ss_pred cchHHHHHHHhhhhc--cChhhhhHHhHhhhHHH--------------------------------HHHHHhhhhhHhhc
Confidence 788999999998874 55655544433222111 01122334566778
Q ss_pred CChhHHHHHHHHHHhcC---CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHHHH
Q 043758 704 GKKGTVQKIVLKVKDIE---FMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAAGEIDQA 779 (918)
Q Consensus 704 g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A 779 (918)
|++..|.+.+.+..... ..|+..+|-....+..+.|+..+|+.--+...+ +.|... .+..-..++...++|++|
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998776432 334566777777888889999999998888776 333221 223333456677889999
Q ss_pred HHHHHHHHhC
Q 043758 780 IGLFNQMNAD 789 (918)
Q Consensus 780 ~~~~~~~~~~ 789 (918)
++-|++..+.
T Consensus 341 V~d~~~a~q~ 350 (486)
T KOG0550|consen 341 VEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHhh
Confidence 9999888775
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.52 E-value=0.0014 Score=56.03 Aligned_cols=96 Identities=19% Similarity=0.099 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCC---CcccHH
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK----KATYEHLLECFCANCLSIPAFNMFKEMIVHDHVP---CLSNCN 869 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~ 869 (918)
++..++..+.+.|++++|.+.++.+.+. .|+ ...+..+..++.+.|++++|...++.+.... |. .+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHH
Confidence 3444555556666666666666665532 121 2234445555666666666666666665432 22 134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 870 WLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 870 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.++.++.+.|++++|...++++.+..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666666666654
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.013 Score=58.78 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCC-----CChh-hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCE-----PDSY-TCNTLIHGFFKMGLFDKGWVLYSQMSD 266 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 266 (918)
+..+...+.+.|++++|.++|++....... .+.. .|...+-++...|++..|...++....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555566666655555432211 1111 122222234445555555555555543
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.48 E-value=0.012 Score=51.23 Aligned_cols=103 Identities=10% Similarity=-0.055 Sum_probs=52.5
Q ss_pred CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHH
Q 043758 95 PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSL 174 (918)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 174 (918)
|++.....+..++...|++.||...|++...--...|....-.+..+....++...|...++.+-+-....-+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444455555555566666666666555544344455555555555555555555555555554411111123333444
Q ss_pred HHHHhccCchHHHHHHHHHHHhC
Q 043758 175 FYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 175 l~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.+.+...|+++.|+..|+...+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 45555555555555555555554
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.47 E-value=0.0024 Score=54.42 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=41.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 043758 728 YNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN----QVTFCILINGHIAAGEIDQAIGLFNQMNADG--CVPDKTVYNTL 801 (918)
Q Consensus 728 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l 801 (918)
+..++..+.+.|++++|...|+.+.... |+ ...+..+..++.+.|++++|...|+.+.... .......+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3344444445555555555555554421 21 1123334444455555555555555544421 00112334444
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
..++...|++++|...++++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 4444455555555555554443
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.0036 Score=57.20 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=56.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH-------
Q 043758 73 VALGNIEDALRHFDRLISKNIVP--IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC------- 143 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 143 (918)
...|++++|+..|+.++...+.| ...+|..+..++...|++++|+..+++..... +....++..+...+.
T Consensus 46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~ 124 (168)
T CHL00033 46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAI 124 (168)
T ss_pred HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHH
Confidence 55677777777777776654332 23478888888889999999999998888664 334455666666666
Q ss_pred cCCChhHHHHHHHH
Q 043758 144 YKGFLDEVLEVVNI 157 (918)
Q Consensus 144 ~~g~~~~A~~~~~~ 157 (918)
..|+++.|+..+++
T Consensus 125 ~~g~~~~A~~~~~~ 138 (168)
T CHL00033 125 EQGDSEIAEAWFDQ 138 (168)
T ss_pred HcccHHHHHHHHHH
Confidence 55666544444443
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.43 E-value=0.002 Score=66.45 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=52.8
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHc--CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE--GLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTL 801 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 801 (918)
+.......++.+....+.+++..++.+.... ....-..|..++++.|...|..++++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344444444444444445555555444432 11011113334555555555555555555544444555555555555
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLE 838 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (918)
++.+.+.|++..|.++...|...+...+..|+.-.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~ 181 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALY 181 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 5555555555555555555444333334344333333
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.40 E-value=0.0016 Score=67.38 Aligned_cols=86 Identities=8% Similarity=-0.126 Sum_probs=71.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|+++.|+..|+++++.++. +..+|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 6778888888888888887754 66788888888888899999999998888775 456677888888888889999999
Q ss_pred HHHHHHHh
Q 043758 153 EVVNIMRK 160 (918)
Q Consensus 153 ~~~~~~~~ 160 (918)
..|+...+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 88888876
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.0012 Score=62.61 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=52.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.+++++|+..|..+++.++. |++.|-.-..+|.+.|.++.|++-.+..+..+ +.-..+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 5555666666666666655543 45555555555666666666665555555544 333445555666666666666666
Q ss_pred HHHHHHHhcCCCCCCcccH
Q 043758 153 EVVNIMRKKKGLVPALHPY 171 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ 171 (918)
+.|.+.++ +.|+-.+|
T Consensus 170 ~aykKaLe---ldP~Ne~~ 185 (304)
T KOG0553|consen 170 EAYKKALE---LDPDNESY 185 (304)
T ss_pred HHHHhhhc---cCCCcHHH
Confidence 66655554 44554444
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.39 E-value=0.17 Score=50.06 Aligned_cols=307 Identities=14% Similarity=0.076 Sum_probs=194.8
Q ss_pred HHHHHHHHH--cCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHH--HHHHH
Q 043758 543 FTTMINGYL--QNRKPIEACQLFEKMKENSVQPGSYPYTALISGLV--KKGMVDLGCMYLDRMLADGFVPNVV--LYTAL 616 (918)
Q Consensus 543 ~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l 616 (918)
|..+-.++. -.|+-..|.++-.+..+. +..|...+..|+.+-. -.|+++.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 357777787777665532 3456666666766643 479999999999999863 3322 23444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhh
Q 043758 617 INHFLRAGEFEFASRLENLMVTNQIEFD-LIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKST 695 (918)
Q Consensus 617 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (918)
.-...+.|+.+.|.+.-++.-.. .|. ...+.+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~At-------------------------------------------- 194 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEK--APQLPWAARAT-------------------------------------------- 194 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHH--------------------------------------------
Confidence 44556789999888887776532 222 1222233
Q ss_pred hHHHHHhCCChhHHHHHHHHHHhcC-CCCChh--hHHHHHHHHH--c-cCChhHHHHHHHHHHHcCCCCcHHh-HHHHHH
Q 043758 696 AFSAVFSNGKKGTVQKIVLKVKDIE-FMPNLY--LYNDIFLLLC--G-VGRMDDAYDHFQMMKREGLRPNQVT-FCILIN 768 (918)
Q Consensus 696 ~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~--~-~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~ 768 (918)
....+..|+++.++++++.-++.. +.++.. .--.|+.+-+ . ..+...|...-.+..+ +.||.+- --.-..
T Consensus 195 -Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAr 271 (531)
T COG3898 195 -LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAAR 271 (531)
T ss_pred -HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHH
Confidence 334455699999999998766443 233332 1112221111 1 1345555555555444 5677552 223456
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHccCCh
Q 043758 769 GHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-GFVPKKA-TYEHLLECFCANCLS 846 (918)
Q Consensus 769 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~ 846 (918)
++.+.|+..++-.+++.+-+.. |.+..+ ..|.+...-+.+..-+++..+. .++|+.. ..-.+..+-...|++
T Consensus 272 alf~d~~~rKg~~ilE~aWK~e--PHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAE--PHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcC--CChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 7899999999999999998864 444432 3344444334455555544321 3567554 555566677888999
Q ss_pred hhHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCcccchhhhccc
Q 043758 847 IPAFNMFKEMIVHDHVPCLSNCNWLLNILCQE-KHFHEAQIVLDVMHKRGRLPCTSTRGFWRKHF 910 (918)
Q Consensus 847 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (918)
..|....+..... .|....|..|.++-... |+-.+++..+-+..+.-..|.++.-++..+.+
T Consensus 346 ~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~adg~vse~w 408 (531)
T COG3898 346 SAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTADGVVSEAW 408 (531)
T ss_pred HHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccccCcccccc
Confidence 9988888877664 77888899999988877 99999999999999888888777666655443
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.38 E-value=0.0011 Score=68.49 Aligned_cols=108 Identities=7% Similarity=-0.053 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccC
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANC 844 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 844 (918)
-...+...|++++|+..|+++++... -+...|..+..+|...|++++|+..++++.+ +.| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 34567788999999999999998532 2567888888999999999999999999986 445 5567888888999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 043758 845 LSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ 877 (918)
Q Consensus 845 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (918)
++++|...+++++..+ |.+......+..+..+
T Consensus 85 ~~~eA~~~~~~al~l~-P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 85 EYQTAKAALEKGASLA-PGDSRFTKLIKECDEK 116 (356)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 9999999999999886 6677666665554333
No 170
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.35 E-value=0.22 Score=50.33 Aligned_cols=476 Identities=12% Similarity=0.047 Sum_probs=253.4
Q ss_pred HHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 118 DYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.+=+++.+. |.|+..|..++.-+...+.+++..+++++|.. .++--..+|.-.+.+-....++..++.+|.++...
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 444444433 66788888888888888888888888888864 45555566666676666678888888899888887
Q ss_pred CCCCChhhHHHHHHHHhcCC-----Ch-HHHHHHHHHHHh-cCCCCChh-hHHHHH---HHHHhcCChhH------HHHH
Q 043758 198 GFYVDKLMYTSLINGYCSNR-----NM-KMAMRLFFRMLK-TGCEPDSY-TCNTLI---HGFFKMGLFDK------GWVL 260 (918)
Q Consensus 198 ~~~~~~~~~~~li~~~~~~g-----~~-~~A~~~~~~m~~-~~~~p~~~-~~~~ll---~~~~~~g~~~~------a~~~ 260 (918)
.. +...|...+..--+.+ +- ....+.|+-... .++.|-.. .|+..+ ...-..|.+++ ....
T Consensus 106 ~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 44 4556665554322221 11 112223333222 23344332 333332 22223344432 2222
Q ss_pred HHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHh--
Q 043758 261 YSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK--HNRLMEVDELYKKMLA-- 336 (918)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~-- 336 (918)
+.+|+.- -.|++++-+.=|+..... .|..+- +-++. +--+..|...++++..
T Consensus 184 Y~ral~t-----------------P~~nleklW~dy~~fE~e---~N~~Ta----rKfvge~sp~ym~ar~~yqe~~nlt 239 (660)
T COG5107 184 YMRALQT-----------------PMGNLEKLWKDYENFELE---LNKITA----RKFVGETSPIYMSARQRYQEIQNLT 239 (660)
T ss_pred HHHHHcC-----------------ccccHHHHHHHHHHHHHH---HHHHHH----HHHhcccCHHHHHHHHHHHHHHHHh
Confidence 2222211 123444443333322210 111110 00110 1113455566666543
Q ss_pred CCCCC----ChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCc
Q 043758 337 NRVAP----DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLA 412 (918)
Q Consensus 337 ~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 412 (918)
.|... +..|++.+-+ ..+ ..-...+.--.+.+ +....+.+.+...-++.+...--+ ..
T Consensus 240 ~Gl~v~~~~~~Rt~nK~~r----~s~-S~WlNwIkwE~en~------------l~L~~~~~~qRi~y~~~q~~~y~~-~~ 301 (660)
T COG5107 240 RGLSVKNPINLRTANKAAR----TSD-SNWLNWIKWEMENG------------LKLGGRPHEQRIHYIHNQILDYFY-YA 301 (660)
T ss_pred ccccccCchhhhhhccccc----ccc-chhhhHhhHhhcCC------------cccCCCcHHHHHHHHHHHHHHHhh-hh
Confidence 23322 1223322111 000 00000010000111 111112223444444444443322 23
Q ss_pred hHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHhcCChhhHHHHHHHhhcc-----------cCc
Q 043758 413 NVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLI-KCFYQVGFLEGANAIVELMQDT-----------EGN 480 (918)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~-----------~~~ 480 (918)
+..|-..-..+...++-+.|+......... .|. +...+ ..+.-..+.+.....|+...+. ...
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s 376 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESAS 376 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhc
Confidence 355655556666777888887766544321 222 22222 2233344444444444443332 111
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHHHHHHHHHHHHcCCChHHH
Q 043758 481 CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAG-IDPDEVFFTTMINGYLQNRKPIEA 559 (918)
Q Consensus 481 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 559 (918)
...|+++...+++-+-.. .-+.+|...+....+..-++.|..+|.+..+.+ +.+++..+++++..++. |++.-|
T Consensus 377 ~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta 451 (660)
T COG5107 377 KVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATA 451 (660)
T ss_pred cccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchH
Confidence 112333222222222111 245677888888888889999999999999987 67888899999987765 688889
Q ss_pred HHHHHHHHhCCCCCCchhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043758 560 CQLFEKMKENSVQPGSYPY-TALISGLVKKGMVDLGCMYLDRMLADGFVPN--VVLYTALINHFLRAGEFEFASRLENLM 636 (918)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 636 (918)
..+|+.-... -||...| ...+.-+...++-+.|..+|+..+.. +..+ ..+|..+++--..-|+...+..+-+++
T Consensus 452 ~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 452 YNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 9999886665 4565544 45667778899999999999966554 1222 568999999889999999888888888
Q ss_pred HHCCCCccHHHHHHHHHHHh
Q 043758 637 VTNQIEFDLIAYIALVSGVC 656 (918)
Q Consensus 637 ~~~~~~p~~~~~~~ll~~~~ 656 (918)
.. +-|...+.......|.
T Consensus 529 ~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 529 RE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HH--HcCcHhHHHHHHHHHh
Confidence 75 4455544444444443
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.33 E-value=0.00029 Score=42.53 Aligned_cols=29 Identities=38% Similarity=0.725 Sum_probs=15.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (918)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.0033 Score=49.94 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=19.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCC-CCcHHhHHHHHHHHH
Q 043758 732 FLLLCGVGRMDDAYDHFQMMKREGL-RPNQVTFCILINGHI 771 (918)
Q Consensus 732 ~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~ 771 (918)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+..
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 3333344555555555555555555 455555555554443
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.30 E-value=0.0034 Score=50.89 Aligned_cols=93 Identities=15% Similarity=0.226 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555555666666666666555432 1122344445555555555555555555555443 2233444455555555
Q ss_pred cCCHHHHHHHHHHHh
Q 043758 286 EGEVDAALMLLNSKV 300 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~ 300 (918)
.|+.+.|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555555555555544
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.12 Score=51.61 Aligned_cols=271 Identities=16% Similarity=0.035 Sum_probs=168.6
Q ss_pred CchhHHhhhhh--hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHH
Q 043758 60 QSQSALLLYQN--DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNV 137 (918)
Q Consensus 60 ~~~~a~~~~~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 137 (918)
...+|.+..+. ...+..++..|+..+..+++..+. +...|..-+..+...|++++|.--.+.-++.. +-....+..
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r 122 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLR 122 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccc
Confidence 34455555543 337778899999999999988765 46677777778888899999988777665443 111222333
Q ss_pred HHHHHHcCCChhHHHHHHH---------------HHHhcCCCCCCcccHHHH-HHHHhccCchHHHHHHHHHHHhCCCCC
Q 043758 138 LIDGLCYKGFLDEVLEVVN---------------IMRKKKGLVPALHPYKSL-FYALCKNIRTVEAESFAREMESQGFYV 201 (918)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~---------------~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~ 201 (918)
....+...++..+|.+.++ .+..-..-+|....+..+ ..++.-.|++++|.++--.+.+...
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-- 200 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-- 200 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc--
Confidence 3333333333333333222 111101111222222222 2456677999999988888877632
Q ss_pred ChhhHHHHHH--HHhcCCChHHHHHHHHHHHhcCCCCChhhH---HHH----------HHHHHhcCChhHHHHHHHHHHh
Q 043758 202 DKLMYTSLIN--GYCSNRNMKMAMRLFFRMLKTGCEPDSYTC---NTL----------IHGFFKMGLFDKGWVLYSQMSD 266 (918)
Q Consensus 202 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~l----------l~~~~~~g~~~~a~~~~~~~~~ 266 (918)
...+..+++ ++.-.++.+.|..-|++.+.. .|+-..- ... .+-..+.|++..|.+.|.+.+.
T Consensus 201 -~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 201 -TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred -chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 223333443 445678899999999998865 3443321 111 2234478999999999999987
Q ss_pred CC---CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 267 WG---FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 267 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
.. ..++...|.....+..+.|+..+|+.--++....+ +.=...+..-..++...+++++|.+-|++..+..
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 63 44566677778888889999999999888887643 1111223333456666788999999998887653
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.01 Score=56.91 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChhhHHHHHHHHHhCCCCCCcccHHH
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANC---LSIPAFNMFKEMIVHDHVPCLSNCNW 870 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ 870 (918)
|...|..|..+|...|+...|..-|.+..+. ..++...+..+..++..+. ...++..++++++..+ |-|.++...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 6788888999999999999999888888763 2345566666666655444 3667888999988887 888888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 871 LLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 871 l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
|+..+...|++.+|...++.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999999999999999888876
No 176
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.24 E-value=0.0042 Score=61.09 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH----hCCCC-CCHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNA----DGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMH----KRGFV-PKKA 831 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~ 831 (918)
.|..|...|.-.|+++.|+..-+.-+. -|-.. ....+..+..++.-.|+++.|.+.++... +.|-+ ...-
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566677777777888888865443222 13222 23567778888888899999988887654 22222 1223
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHhC----C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 832 TYEHLLECFCANCLSIPAFNMFKEMIVH----D-HVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 832 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
...+|..+|.-.+++++|+.+..+-+.. + ..-...+++.|+.+|...|..++|....+.-++..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4556777777777888888877664321 1 12236778899999999999999988877766543
No 177
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.24 E-value=0.00043 Score=41.78 Aligned_cols=29 Identities=28% Similarity=0.674 Sum_probs=15.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREG 755 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 755 (918)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=97.24 E-value=0.012 Score=51.21 Aligned_cols=91 Identities=8% Similarity=-0.042 Sum_probs=61.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 801 LLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
...-+...|++++|..+|.-+.-.+ .-+..-|..|..++-..+++++|+..+......+ +.|+..+.+.+.+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 3344556777777777777665421 1244455666666677777777777777776666 6677777777777777777
Q ss_pred HHHHHHHHHHHHh
Q 043758 881 FHEAQIVLDVMHK 893 (918)
Q Consensus 881 ~~~A~~~~~~~~~ 893 (918)
.+.|+..++...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777666
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0067 Score=60.47 Aligned_cols=130 Identities=11% Similarity=-0.005 Sum_probs=78.6
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc-CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY-KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYA 177 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~ 177 (918)
+|..+++...+.+..+.|..+|.++...+ ..+..+|...+..-.. .++.+.|..+|+...+ .++.+...|...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 56677777777777777777777776433 2333444444444223 4555557777777765 245556666677777
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDK---LMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
+...++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777665 22121 36777777666777777777777776654
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.21 E-value=0.005 Score=48.91 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=46.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCCCccHhhHHH
Q 043758 208 SLINGYCSNRNMKMAMRLFFRMLKTGC-EPDSYTCNTLIHGFFKMG--------LFDKGWVLYSQMSDWGFQPNMVTDLI 278 (918)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (918)
..|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555555777777777777777777 677777777777655432 12234455555555555666666665
Q ss_pred HHHHHH
Q 043758 279 MISNYC 284 (918)
Q Consensus 279 l~~~~~ 284 (918)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.21 E-value=0.007 Score=60.33 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 043758 506 AIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMING-YLQNRKPIEACQLFEKMKENSVQPGSYPYTALISG 584 (918)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (918)
.+|-.++...-+.+..+.|..+|.++.+.+ ..+..+|...... |...++.+.|.++|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888899999999999999999998653 2344445544444 44467788899999999876 45677888899999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 585 LVKKGMVDLGCMYLDRMLADGFVP---NVVLYTALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 585 ~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
+.+.|+.+.|..+|++.+.. +.+ ....|..++..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999876 232 235999999999999999999999999886
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.18 E-value=0.00091 Score=49.32 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=44.6
Q ss_pred HHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 837 LECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 837 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
...+...|++++|...++++++.. |.+..++..++.++...|++++|...++++.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345677888888888888888776 6678888888888888888888888888876654
No 183
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.17 E-value=0.016 Score=53.15 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN--QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLL 802 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 802 (918)
..+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|+..+++..+. .| +...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 4455566666666666666666666655322221 234555555666666666666666666553 22 334445555
Q ss_pred HHHHHcCChhHHH
Q 043758 803 KGLCQAGRLSHVF 815 (918)
Q Consensus 803 ~~~~~~g~~~~A~ 815 (918)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 5555555544433
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.16 E-value=0.083 Score=49.86 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=35.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 73 VALGNIEDALRHFDRLISKNIVP--IKLACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
...|++++|...|+.+....+.. .+.+...++.++.+.|++++|+..+++..+..
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67777888888888777654331 23355567777788888888888888877654
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.15 E-value=0.015 Score=63.06 Aligned_cols=135 Identities=10% Similarity=-0.024 Sum_probs=79.0
Q ss_pred CCcchhHHHHHHHHHc--C---CChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhcc--------CchHHHHHHHHHH
Q 043758 129 DLNCWSYNVLIDGLCY--K---GFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKN--------IRTVEAESFAREM 194 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~ 194 (918)
+.|...|...+++... . ++...|+.+|++..+ ..|+. ..|..+..++... .+...+.+..++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4455555555555332 1 225566666666665 33442 2233222222111 1233444444443
Q ss_pred HhC-CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 195 ESQ-GFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 195 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
... ..+.+...|.++.-.+...|++++|...+++.... .|+...|..+...+...|+.++|.+.+++....+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 12235566777766666778888888888888776 3677778888888888888888888888877653
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.15 E-value=0.01 Score=49.40 Aligned_cols=59 Identities=17% Similarity=0.077 Sum_probs=31.3
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhcCCCCc--chhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLN--CWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
.+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.+++....
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555666666666666555553322 22344455555556666666666655554
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.12 E-value=0.0048 Score=60.67 Aligned_cols=133 Identities=14% Similarity=0.050 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHH----HcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMK----REGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNAD----GC-VPDK 795 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~ 795 (918)
.+|-.|...|.-.|+++.|+..-+.-+ +-|-+. ....+..+..++.-.|+++.|.+.|+..... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 466677777777788998887654322 222111 1236777888899999999999988875442 21 1234
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHh
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHK----R-GFVPKKATYEHLLECFCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 858 (918)
.+..+|..+|.-..++++|+.++.+=.. . ...-....+++|..++...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5556788888888899999998776432 1 1233445788888899999999999888877653
No 188
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.0064 Score=55.76 Aligned_cols=90 Identities=8% Similarity=0.035 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPD--KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLE 838 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 838 (918)
.+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+ ..| +...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 456666667777888888888887776422221 35666777777777777777777777765 334 3334455555
Q ss_pred HHHccCChhhHHHHH
Q 043758 839 CFCANCLSIPAFNMF 853 (918)
Q Consensus 839 ~~~~~~~~~~A~~~~ 853 (918)
++...|+...+...+
T Consensus 115 ~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 115 IYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHcCChHhHhhCH
Confidence 666666655444333
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.11 E-value=0.0097 Score=49.57 Aligned_cols=91 Identities=19% Similarity=0.216 Sum_probs=64.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHH-HHHH
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVPD--KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK---KATYEH-LLEC 839 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~-l~~~ 839 (918)
+..++-..|+.++|+.+|++....|...+ ...+-.+...|...|++++|..++++.... .|+ ...... +.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 45567778888888888888888776654 356667777888888888888888887753 243 222222 2336
Q ss_pred HHccCChhhHHHHHHHHHh
Q 043758 840 FCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 840 ~~~~~~~~~A~~~~~~~~~ 858 (918)
+...|+.++|+..+-..+.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7788888888888877664
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.55 Score=50.27 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 043758 503 PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKM 566 (918)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 566 (918)
-+....-.+..++.+.|.-++|.+.|-+.. .|- ..+..|...++|.+|.++-+..
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 355666677778888888888777664432 122 2345666777777777766554
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.10 E-value=0.00096 Score=49.95 Aligned_cols=64 Identities=14% Similarity=0.010 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 043758 830 KATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEK-HFHEAQIVLDVMHKR 894 (918)
Q Consensus 830 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 894 (918)
..+|..+...+...|++++|+..+++.++.+ |.++.++..++.+|...| ++++|...+++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4566667777788888888888888887776 777788888888888888 688888888777654
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.075 Score=49.40 Aligned_cols=240 Identities=10% Similarity=0.011 Sum_probs=148.0
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH-cCC-ChhHHHHHHHHHHhcCCCCCCcccHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC-YKG-FLDEVLEVVNIMRKKKGLVPALHPYKS 173 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (918)
....|+--+.++.+...+++|..-++...+.+ .||.. |...=..|- +.| .+.-+.+++-.... ..-| ..+++
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~--~~lg--npqes 141 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQ--QYLG--NPQES 141 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHH--HhcC--CcHHH
Confidence 34577777888899999999988777766554 33321 111111111 222 23334443333222 1112 23455
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCC-CC--------ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 043758 174 LFYALCKNIRTVEAESFAREMESQGF-YV--------DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTL 244 (918)
Q Consensus 174 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (918)
+.+.+.-..-++.- ....+.... .. -...-+.+++.+.-.|.+.-....+.+.++...+.+......|
T Consensus 142 LdRl~~L~~~V~~i---i~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKI---LANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHH---HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 55554433222222 222222211 00 1233456677777788999999999999987656667778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHH-----HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 043758 245 IHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLI-----MISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALY 319 (918)
Q Consensus 245 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 319 (918)
.+.-.+.|+.+.|...|+...+..-..|..+.+. ....|...+++..|...|.+++..+ +.|...-|.-.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHH
Confidence 8888899999999999998766533444444433 3445677789999999999888776 456666666666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHH
Q 043758 320 KHNRLMEVDELYKKMLANRVAPDHLLSF 347 (918)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 347 (918)
-.|+...|++.++.|++. .|...+-.
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 679999999999999875 44444333
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.07 E-value=0.008 Score=53.40 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=77.6
Q ss_pred HHhcCCHHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 043758 770 HIAAGEIDQAIGLFNQMNAD--G-CVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLS 846 (918)
Q Consensus 770 ~~~~g~~~~A~~~~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 846 (918)
....|+.+.+...++++... | +-|+...+.. .......++++. ......++..+...|++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W----------~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEW----------VEPERERLRELY-------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTT----------HHHHHHHHHHHH-------HHHHHHHHHHHHHTT-H
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHH----------HHHHHHHHHHHH-------HHHHHHHHHHHHhccCH
Confidence 35567888888888888775 2 2222211011 111111222221 12455566677889999
Q ss_pred hhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCcccchhhhc
Q 043758 847 IPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK-----RGRLPCTSTRGFWRK 908 (918)
Q Consensus 847 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~ 908 (918)
++|...+..++... |-|...|..++.+|...|+..+|.++|+++.+ .|+.|+..|..+.++
T Consensus 79 ~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 79 EEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp HHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 99999999999887 88888999999999999999999999988743 599999988877665
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.039 Score=53.07 Aligned_cols=128 Identities=13% Similarity=0.027 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHH
Q 043758 186 EAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG---LFDKGWVLYS 262 (918)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~ 262 (918)
....-++.-...++. |...|-.|..+|...|++..|...|.+..+.. .++...+..+..++.... ...++..+|+
T Consensus 140 ~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 140 ALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 333444455555555 89999999999999999999999999998762 344556666666554332 3467889999
Q ss_pred HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 043758 263 QMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDAL 318 (918)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 318 (918)
+++... +.|..+...|...+...|++.+|...++.|.+.. |....+..+|..-
T Consensus 218 ~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~~ 270 (287)
T COG4235 218 QALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIERS 270 (287)
T ss_pred HHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHHH
Confidence 999876 5567777778888999999999999999999875 5555666666543
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.081 Score=49.19 Aligned_cols=61 Identities=10% Similarity=-0.106 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHh
Q 043758 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMES 196 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 196 (918)
.++++..+.-.+.+.-...++..+++ ..-+.++.....+.+.-.+.|+.+.|...|++..+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444444444444444444554444 22223333334444444445555555555554444
No 196
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.04 E-value=0.0051 Score=56.19 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVP--DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.+..+...+...|++++|+..|++.......| ...+|..+..++...|++++|+..+++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555566666666666665431111 123455555556666666666666655553
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.03 E-value=0.12 Score=50.20 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 278 IMISNYCREGEVDAALMLLNSKVSSN--LAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 278 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
.+...|.+.|.+..|..-|+.+.+.= .+....+...++.+|...|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 35566778888888888888777652 12223345567778888888888877765553
No 198
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.01 E-value=0.0075 Score=57.34 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=95.0
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 043758 733 LLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPD-KTVYNTLLKGLCQAGR 810 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 810 (918)
.-..+.+++.+|+..|.+.++ +.| |.+-|..-..+|.+.|.++.|++-.+..+. +.|. ..+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 456778999999999999998 455 555667777889999999999999998887 4454 4789999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHccCChh---hHHHHHHHHHhCCCCCCcc
Q 043758 811 LSHVFSVFYSMHKRGFVPKKATYEHLLE-CFCANCLSI---PAFNMFKEMIVHDHVPCLS 866 (918)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~---~A~~~~~~~~~~~~~~~~~ 866 (918)
+++|++.|++.++ +.|+..+|..=+. +--+.+... .+....+-....|..|+..
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 9999999999885 7898888776655 333333333 3344444444455445533
No 199
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.01 E-value=0.032 Score=60.57 Aligned_cols=136 Identities=8% Similarity=-0.001 Sum_probs=64.4
Q ss_pred CCCCChhhHHHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhc--------CCHHHHHHHHHH
Q 043758 720 EFMPNLYLYNDIFLLLCGVG-----RMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAA--------GEIDQAIGLFNQ 785 (918)
Q Consensus 720 ~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~--------g~~~~A~~~~~~ 785 (918)
..+.+...|...+.+..... ....|..+|++.++ ..|+.. .+..+..++... +++..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 33456666666665544322 25567777777776 355542 333332222211 112222233332
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 786 MNAD-GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 786 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
.... ....++..|..+.......|++++|...+++..+ +.|+...|..+...+...|+.++|...++++...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2221 1222334444444444445555555555555554 3345445555555555555555555555555544
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.89 E-value=0.014 Score=52.98 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=63.4
Q ss_pred CCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcc
Q 043758 235 EPDSYTCNTLIHGFFK-----MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVH 309 (918)
Q Consensus 235 ~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 309 (918)
..+..+|..++..+.+ .|..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------------------- 103 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------------------- 103 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------------------
Confidence 3466677777776653 35666666777778888888888888888777643 2111
Q ss_pred hHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCcc
Q 043758 310 CYTVLIDALYK--HNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTE 358 (918)
Q Consensus 310 ~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 358 (918)
=..++++-.. -.+-+-|++++++|...|+-||..|+..++..+.+.+.
T Consensus 104 -p~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 -PRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -cccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111111 12344567777777777777777777777777766554
No 201
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.89 E-value=0.63 Score=47.40 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=49.0
Q ss_pred HHHcCCCCcH----HhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 043758 751 MKREGLRPNQ----VTFCILING--HIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR 824 (918)
Q Consensus 751 m~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (918)
+.+.|++|-. ..-|.|.+| +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++..+
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L--- 521 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL--- 521 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC---
Confidence 3444555432 234555554 3466777777655444444 6677777777777777777778887777663
Q ss_pred CCCCCHHHHHHHH
Q 043758 825 GFVPKKATYEHLL 837 (918)
Q Consensus 825 ~~~p~~~~~~~l~ 837 (918)
+|+..+++.-+
T Consensus 522 --P~n~~~~dskv 532 (549)
T PF07079_consen 522 --PPNERMRDSKV 532 (549)
T ss_pred --CCchhhHHHHH
Confidence 56666665543
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.87 E-value=0.003 Score=47.05 Aligned_cols=52 Identities=19% Similarity=0.065 Sum_probs=29.5
Q ss_pred ccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 180 KNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 180 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
+.|++++|...|+++.+..+. +...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666666666666555433 5555555666666666666666666665554
No 203
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.85 E-value=0.0046 Score=46.08 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=34.5
Q ss_pred hhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhh
Q 043758 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQN 70 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~ 70 (918)
|+.+|++.+|...|+.++...|+ +...+..+..++.+.|++++|...+.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD------------------NPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT------------------SHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred ChhccCHHHHHHHHHHHHHHCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57899999999999999988887 454555666777444444444444333
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.85 E-value=0.0033 Score=47.68 Aligned_cols=58 Identities=12% Similarity=-0.044 Sum_probs=47.6
Q ss_pred HHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 838 ECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 838 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
..+.+.+++++|.+.++.++..+ |.++..+..++.+|.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45677888888888888888876 77888888888888888888888888888887663
No 205
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.85 E-value=0.0047 Score=45.44 Aligned_cols=57 Identities=16% Similarity=-0.031 Sum_probs=34.6
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 175 FYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 175 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
...+.+.|++++|...|+++.+..+. +...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666666666666666433 5556666666666666666666666666554
No 206
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.83 E-value=0.0038 Score=46.67 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=41.8
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC-ChhHHHHHHHHHHh
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG-FLDEVLEVVNIMRK 160 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 160 (918)
+..|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666777777777777777766665 445666666666676666 56777777666654
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.72 E-value=0.81 Score=46.28 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 841 (918)
+.+..|.-+...|+...|.++..+.. + |+...|...+.+|+..++|++-..+... +-++..|.-++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555666677777777776655542 2 6777788888888888888776665432 122356777777777
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDV 890 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 890 (918)
+.|+..+|..++.++ + +...+..|.+.|+|.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 788888887777762 1 24567777888888888766443
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.70 E-value=0.02 Score=52.05 Aligned_cols=110 Identities=20% Similarity=0.269 Sum_probs=74.0
Q ss_pred CCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043758 445 RPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEA 524 (918)
Q Consensus 445 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 524 (918)
..+..+|..++..+.+.. -.+.|.++-....+..|.+.|+..|..+|+.|++++=+ |.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~-----------------~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-- 103 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRD-----------------VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-- 103 (228)
T ss_pred cccHHHHHHHHHHHHhcC-----------------CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc--
Confidence 456677777777776553 13678888888899999999999999999999988765 3321
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCC
Q 043758 525 EDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGM 590 (918)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (918)
|......... ---.+-+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 104 -------------p~n~fQ~~F~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 -------------PRNFFQAEFM---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------------cccHHHHHhc---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111110 0112445677788888888888888888877777766543
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=96.61 E-value=0.032 Score=48.52 Aligned_cols=86 Identities=8% Similarity=-0.007 Sum_probs=68.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|++++|..+|.-+...++. ++.-|..|..++...+++++|+..|......+ .-|+..+......+...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 6788888888888888776654 56677888888888899999999988776655 356666777778888888888888
Q ss_pred HHHHHHHh
Q 043758 153 EVVNIMRK 160 (918)
Q Consensus 153 ~~~~~~~~ 160 (918)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 88888876
No 210
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.48 E-value=0.81 Score=43.30 Aligned_cols=184 Identities=15% Similarity=0.158 Sum_probs=100.2
Q ss_pred hHHhhhhhhh--HhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHH
Q 043758 63 SALLLYQNDF--VALGNIEDALRHFDRLISKNIV--PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVL 138 (918)
Q Consensus 63 ~a~~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (918)
.+.++|.+.+ ...|++++|.+.|+.+..+.+. -...+...++.++.+.+++++|+...++............|...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 4666776666 8889999999999999877533 13446667778888999999999999988876544333455555
Q ss_pred HHHHHc-------CCChhHHHHHHHHHHhc-CCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043758 139 IDGLCY-------KGFLDEVLEVVNIMRKK-KGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLI 210 (918)
Q Consensus 139 ~~~~~~-------~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 210 (918)
|.+++. ..|...+.+.+..+.+- ...|.+..+-. |..-...+... =...=-.+.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d--------------A~~~i~~~~d~----LA~~Em~Ia 174 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD--------------AKARIVKLNDA----LAGHEMAIA 174 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh--------------HHHHHHHHHHH----HHHHHHHHH
Confidence 555542 22333333333332220 01221111111 11111111100 000011344
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 211 NGYCSNRNMKMAMRLFFRMLKTGCEPDS---YTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
+.|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|...|-.++|...-+-+.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 5667777777777777777765 12111 234445556666666666665544443
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.46 E-value=0.22 Score=52.62 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 043758 240 TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALY 319 (918)
Q Consensus 240 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 319 (918)
+...+..-+.+...+..|.++|..|-.. .++++.+...+++++|..+-+..++- .|| +|..-.+-++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHhh
Confidence 3444444444555666666666665321 24556666677777776666665542 122 2333344444
Q ss_pred hcCChhHHHHHH
Q 043758 320 KHNRLMEVDELY 331 (918)
Q Consensus 320 ~~g~~~~a~~~~ 331 (918)
...++++|.+.|
T Consensus 816 E~DrFeEAqkAf 827 (1081)
T KOG1538|consen 816 ENDRFEEAQKAF 827 (1081)
T ss_pred hhhhHHHHHHHH
Confidence 455555554443
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.42 E-value=0.27 Score=46.35 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChh
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNAD--GCVPDKTVYNTLLKGLCQAGRLS 812 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 812 (918)
+..-|.+.|.+..|..-++.+++. +.+........++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 444566666666666666666665 11112244455556666666555
No 213
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.35 E-value=1.4 Score=44.78 Aligned_cols=130 Identities=17% Similarity=0.286 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhH-HHHHHHHHhcCCHHHHHHHH
Q 043758 706 KGTVQKIVLKVKDIE-FMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF-CILINGHIAAGEIDQAIGLF 783 (918)
Q Consensus 706 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~ 783 (918)
++.|..+|.++.+.+ ..+++..+++++..++. |+...|.++|+--... -||...| +-.+.-+...++-+.|..+|
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 345566666666666 45677777777776654 5677788887765442 3454443 33444556778888888888
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 784 NQMNADGCVPD--KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841 (918)
Q Consensus 784 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 841 (918)
+..+.. +.-+ ...|..+|.--..-|++..+..+=++|.+ +-|...+...+.+-|.
T Consensus 490 etsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 490 ETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 866654 2222 46788888887888888888888888875 4566655555444333
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.34 E-value=0.67 Score=47.25 Aligned_cols=169 Identities=8% Similarity=0.005 Sum_probs=95.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCC--CC-cHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGL--RP-NQVTFCILINGHIA---AGEIDQAIGLFNQMNADGCVPDKTVYNT 800 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 800 (918)
+...++-.|....+++.-+++.+.+...-. -+ ....-....-|+.+ .|+.++|++++..+....-.+++++|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 334555567778888888888888876310 01 11112233445556 7888888888888665555567777777
Q ss_pred HHHHHHHc---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hhhH---HHHH---HHHH-hCCCCC
Q 043758 801 LLKGLCQA---------GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCL-SIPA---FNMF---KEMI-VHDHVP 863 (918)
Q Consensus 801 l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~A---~~~~---~~~~-~~~~~~ 863 (918)
+...|... ...++|+..+.+.-+ +.|+...=-.++..+...|. ++.. .++. ..+. +.|...
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 77766421 246677777776654 34554432223333333333 2221 1111 1222 333222
Q ss_pred Cccc---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 864 CLSN---CNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 864 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
.... +.+++.+..-.|++++|.+.+++|.+....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 2233 345667777888888888888888877533
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.33 E-value=0.037 Score=54.00 Aligned_cols=95 Identities=16% Similarity=0.075 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCC-CHHHHHHH
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPD----KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-GFVP-KKATYEHL 836 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l 836 (918)
|...+....+.|++++|+..|+.+++. .|+ +..+..+..+|...|++++|...|+.+.+. +-.| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444333334456666666666666654 222 245555666666666666666666666532 0011 12233333
Q ss_pred HHHHHccCChhhHHHHHHHHHhC
Q 043758 837 LECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 837 ~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
..++...|+.++|...++++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455556666666666655543
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.20 E-value=0.07 Score=52.13 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ----VTFCILINGHIAAGEIDQAIGLFNQMNAD--GCVPDKTVYN 799 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~ 799 (918)
..|......+.+.|++++|+..|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+. +-......+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555556679999999999999885 3543 35667888899999999999999999875 1122346666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHKR 824 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (918)
.+..++...|+.++|..++++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6778888999999999999998863
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.03 E-value=2 Score=43.49 Aligned_cols=113 Identities=10% Similarity=0.142 Sum_probs=74.8
Q ss_pred cccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 043758 689 VTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILIN 768 (918)
Q Consensus 689 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 768 (918)
...++...+..+...|....|.++-.+.+ .|+-.-|...+.+|+..++|++-..+-.. +-+++-|..++.
T Consensus 176 ~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~ 245 (319)
T PF04840_consen 176 VGLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVE 245 (319)
T ss_pred hcCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHH
Confidence 33455555666666777777777766655 57777777888888888888776654322 123467777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043758 769 GHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSM 821 (918)
Q Consensus 769 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 821 (918)
+|.+.|+..+|..+...+ + + ..-+..|.++|++.+|.+.--+.
T Consensus 246 ~~~~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888887777776652 1 1 34556777788887777664443
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.00 E-value=0.06 Score=43.94 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=50.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHccCC
Q 043758 769 GHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLE---CFCANCL 845 (918)
Q Consensus 769 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~ 845 (918)
+.+..|+.+.|++.|.+.+.. .+-....||.-..++.-+|+.++|++-+++..+..-.-+.....+.+. .|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456667777777777776663 222456677777777777777777777776665321222222222221 3444555
Q ss_pred hhhHHHHHHHHHhCC
Q 043758 846 SIPAFNMFKEMIVHD 860 (918)
Q Consensus 846 ~~~A~~~~~~~~~~~ 860 (918)
.+.|..-|+.....|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555544
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.00 E-value=0.23 Score=44.02 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCCCCchh
Q 043758 507 IYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE-----NSVQPGSYP 577 (918)
Q Consensus 507 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 577 (918)
+...++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44455556666777777777777776653 44566677777777777777777777766642 366665543
No 220
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.28 Score=45.29 Aligned_cols=205 Identities=11% Similarity=0.016 Sum_probs=105.9
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYAL 178 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 178 (918)
.|.....+|....+++.|-..+.+..+.. ..|...| ... .-++.|.-+.+++.+ ++--+..|..-..+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf-hAA------KayEqaamLake~~k---lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF-HAA------KAYEQAAMLAKELSK---LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH-HHH------HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHH
Confidence 34444445566667777776666655321 2222222 111 122333333344332 222233444445567
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc---C--CCCChhhHHHHHHHHHhcCC
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT---G--CEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~p~~~~~~~ll~~~~~~g~ 253 (918)
.++|.++.|-..+++.-+. ..+-++++|+++|++.... + .+.-...|..+-+.+++...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777777666654442 2334556666666654321 1 01112234555566777777
Q ss_pred hhHHHHHHHHHHhC----CCCccH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCcchHHHHHHHHHhcCChh
Q 043758 254 FDKGWVLYSQMSDW----GFQPNM-VTDLIMISNYCREGEVDAALMLLNSKVSS---NLAPSVHCYTVLIDALYKHNRLM 325 (918)
Q Consensus 254 ~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~ 325 (918)
+++|-..+.+-... .-.++. ..+.+.|-.|.-..++..|+..++.-.+. .-+.+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 77765555443221 111222 23555566677778889999988874432 2233455666677665 467777
Q ss_pred HHHHHH
Q 043758 326 EVDELY 331 (918)
Q Consensus 326 ~a~~~~ 331 (918)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 766654
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.88 E-value=0.54 Score=49.83 Aligned_cols=89 Identities=15% Similarity=-0.008 Sum_probs=47.4
Q ss_pred HHHHHHcCCChhHHHHHHH------HHHhcCCCCC---CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH
Q 043758 138 LIDGLCYKGFLDEVLEVVN------IMRKKKGLVP---ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~------~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
....+...|+..+|..+.- .+.. .+-.. +..+...+..-+.+...+.-|.++|..|-.. ..
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lid-I~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ks 778 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLID-IARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KS 778 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHH-HHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HH
Confidence 3445556677766665432 1221 11111 2223333333344455566677777665432 34
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCCh
Q 043758 209 LINGYCSNRNMKMAMRLFFRMLKTGCEPDS 238 (918)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 238 (918)
++..+...+++.+|..+-++..+. .||+
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~--~~dV 806 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEF--KDDV 806 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccc--cccc
Confidence 566677788888888887776653 4454
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.87 E-value=0.045 Score=41.34 Aligned_cols=53 Identities=11% Similarity=-0.050 Sum_probs=24.7
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
|.+.+++++|.++++.+...++. ++..|......+...|++++|...|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444332 444444444444444555555554444444
No 223
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=4 Score=45.38 Aligned_cols=178 Identities=16% Similarity=0.097 Sum_probs=112.6
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHH----HHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNV----LIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSL 174 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 174 (918)
....-+..+.+...++-|+.+-+.- + .+..+... ...-+.+.|++++|...|-+-+. -+.| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh-----HHH
Confidence 4456677778888888888776542 2 22223333 33445578899999888776653 1222 224
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 043758 175 FYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLF 254 (918)
Q Consensus 175 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 254 (918)
+.-|....+..+-...++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 45556666777778888888888876 77778888999999998887776665443 2211 11244556667777777
Q ss_pred hHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 255 DKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
++|..+-..... .......+ +-..|++++|.+.++.++
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 777665554432 22333333 345688888888887765
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.77 E-value=0.16 Score=41.57 Aligned_cols=96 Identities=16% Similarity=0.001 Sum_probs=70.7
Q ss_pred HHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcc---hhHHHHHH
Q 043758 64 ALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNC---WSYNVLID 140 (918)
Q Consensus 64 a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~ 140 (918)
++++-+-+++..|+++.|++.|.+.+..-+. .+.+||.-.+++.-+|+.++|++-+++.++..-+... ..|..-..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4455555668889999999999888876544 6678999999999999999999999888865423222 23444455
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 043758 141 GLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~~~ 160 (918)
.|...|+.+.|..=|+...+
T Consensus 124 lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHHhCchHHHHHhHHHHHH
Confidence 56677888888888887765
No 225
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.61 E-value=5.3 Score=45.13 Aligned_cols=340 Identities=8% Similarity=0.027 Sum_probs=170.0
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHH
Q 043758 482 KWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQ 561 (918)
Q Consensus 482 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 561 (918)
+.|+...+..+...+...-. .....|..+...+ ....+++....+++-... +.....-...+..+.+.+++.....
T Consensus 45 ~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~--P~~~~Lr~~~l~~La~~~~w~~~~~ 120 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPTL--PPARSLQSRFVNELARREDWRGLLA 120 (644)
T ss_pred HCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHccCHHHHHH
Confidence 44566666666655532211 1222232222211 122344444444433221 2222223334445556777776665
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043758 562 LFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI 641 (918)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 641 (918)
++. . .+.+...-..+..+....|+.++|....+.+-..| ...+...+.++..+.+.|...... ++.+|..
T Consensus 121 ~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~--- 190 (644)
T PRK11619 121 FSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLA-YLERIRL--- 190 (644)
T ss_pred hcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHH-HHHHHHH---
Confidence 221 1 13344444666777888888887877777766555 334567777777777666544332 3333321
Q ss_pred CccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCC
Q 043758 642 EFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEF 721 (918)
Q Consensus 642 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 721 (918)
....|+...|..+...+.
T Consensus 191 ----------------------------------------------------------al~~~~~~lA~~l~~~l~---- 208 (644)
T PRK11619 191 ----------------------------------------------------------AMKAGNTGLVTYLAKQLP---- 208 (644)
T ss_pred ----------------------------------------------------------HHHCCCHHHHHHHHHhcC----
Confidence 112255555555554331
Q ss_pred CCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhC-CCCCCH--
Q 043758 722 MPN-LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILING--HIAAGEIDQAIGLFNQMNAD-GCVPDK-- 795 (918)
Q Consensus 722 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~-~~~p~~-- 795 (918)
++ ......++..+.+ ...+...+.. +.|+...-..++.+ -....+.+.|..++..+... ++.++.
T Consensus 209 -~~~~~~a~a~~al~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~ 279 (644)
T PRK11619 209 -ADYQTIASALIKLQND---PNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQ 279 (644)
T ss_pred -hhHHHHHHHHHHHHHC---HHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHH
Confidence 11 1122223333222 2222222111 12222111111111 12344668888888876554 343332
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL 875 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (918)
..+..+.......+...+|...+...... ..+......-+..-.+.++++.+...+..|.... ...+.-.+-+++++
T Consensus 280 ~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~ 356 (644)
T PRK11619 280 ELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLL 356 (644)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHH
Confidence 33334443334433355666666554321 1233333333333347888888888888775432 34566778888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccchhhhccccccc
Q 043758 876 CQEKHFHEAQIVLDVMHKRGRLPCTSTRGFWRKHFIGKE 914 (918)
Q Consensus 876 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (918)
...|+.++|...|+.+... ....+++....+|++
T Consensus 357 ~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa~~Lg~~ 390 (644)
T PRK11619 357 LEQGRKAEAEEILRQLMQQ-----RGFYPMVAAQRLGEE 390 (644)
T ss_pred HHcCCHHHHHHHHHHHhcC-----CCcHHHHHHHHcCCC
Confidence 8889999999998887431 346677666666654
No 226
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.58 E-value=2.9 Score=41.84 Aligned_cols=201 Identities=17% Similarity=0.156 Sum_probs=109.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHC--------CCCCCc-----ccHHHHHHHHHhcCChhhHHHHHHHhhcccCccc
Q 043758 416 FTIYISALCKGGKYEKAYVCLFQLVNF--------GYRPLV-----FTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCK 482 (918)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 482 (918)
|+.-...+.+..+++.|..++++..+. ...|+. .++..++.++...+..+
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~----------------- 101 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYE----------------- 101 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChH-----------------
Confidence 444444444333777777776655432 112222 34455566665555433
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH--cCCChHHHH
Q 043758 483 WGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYL--QNRKPIEAC 560 (918)
Q Consensus 483 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~ 560 (918)
..++|..+++.+...... .+.++-.-+..+.+.++.+.+.+.+.+|...- ......+...+..+. ....+..|.
T Consensus 102 --~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~~~~a~ 177 (278)
T PF08631_consen 102 --SVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEKSPELAA 177 (278)
T ss_pred --HHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhCcHHHH
Confidence 455677777777554333 35555566777777899999999999999852 213344555555442 223456677
Q ss_pred HHHHHHHhCCCCCCch-hHHHH-H-HH--HHhcCC------hhHHHHHHHHHHhC-CCCCCHHHHHHHH-------HHHH
Q 043758 561 QLFEKMKENSVQPGSY-PYTAL-I-SG--LVKKGM------VDLGCMYLDRMLAD-GFVPNVVLYTALI-------NHFL 621 (918)
Q Consensus 561 ~~~~~~~~~~~~~~~~-~~~~l-~-~~--~~~~g~------~~~a~~~~~~~~~~-~~~~~~~~~~~l~-------~~~~ 621 (918)
..+..+....+.|... ....+ + .. ....++ ++....+++...+. +.+.+..+-.++. ..+.
T Consensus 178 ~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~ 257 (278)
T PF08631_consen 178 FCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHY 257 (278)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7777776554455443 11111 1 11 112222 33344445433332 3344444433332 2356
Q ss_pred HcCCHHHHHHHHHHHH
Q 043758 622 RAGEFEFASRLENLMV 637 (918)
Q Consensus 622 ~~g~~~~a~~~~~~~~ 637 (918)
+.++++.|.+.|+-..
T Consensus 258 ~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 258 KAKNYDEAIEWYELAL 273 (278)
T ss_pred hhcCHHHHHHHHHHHH
Confidence 7889999999998654
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=95.52 E-value=0.74 Score=47.74 Aligned_cols=112 Identities=8% Similarity=-0.184 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHH
Q 043758 78 IEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNI 157 (918)
Q Consensus 78 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (918)
..+|.++-+++.+.++. |+.+...+..++...++++.|..+|++....+ |....+|....-.+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677778888888755 77777777777777788999999999888765 33444555555555568888888888888
Q ss_pred HHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHH
Q 043758 158 MRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAR 192 (918)
Q Consensus 158 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 192 (918)
..+.++...........+..|+.. ..+.|.+++-
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 765222222222333333345443 3455555543
No 228
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.51 E-value=3 Score=41.67 Aligned_cols=123 Identities=14% Similarity=0.177 Sum_probs=63.0
Q ss_pred HhcCChHHHHHHHHHHHhCC--CCCChh-----hHHHHHHHhhchh-cHHHHHHHHHHHhhc----C----CCCcc----
Q 043758 73 VALGNIEDALRHFDRLISKN--IVPIKL-----ACVSILRGLFAEE-KFLEAFDYFIKICNA----G----VDLNC---- 132 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~--~~~~~~-----~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~----~~~~~---- 132 (918)
.+.|+.+.|...+.++.... ..|+.. .+..++..+...+ ++++|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677777777777665432 222211 2223333445555 888888888776543 1 11221
Q ss_pred -hhHHHHHHHHHcCCChh---HHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 133 -WSYNVLIDGLCYKGFLD---EVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 133 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.++..++.++...+..+ +|..+++.+.. ..+....++.--+..+.+.++.+++.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~--e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES--EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 24555556665555443 34444444533 12222333433444445566666677777666664
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.41 E-value=2.5 Score=43.31 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 310 CYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
.+.+++.+.+-.|++++|.+..++|.+.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3466778888888888888888888765
No 230
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.33 E-value=2.2 Score=38.93 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 76 GNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 76 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
|-..-|.--|...+...|. -+.+||-+.--+...|+++.|.+.|+...+.+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 3334444444444444322 23345555555555566666666666655554
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.30 E-value=0.25 Score=41.72 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=42.1
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC
Q 043758 570 SVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD-GFVPNVVLYTALINHFLRAGE 625 (918)
Q Consensus 570 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 625 (918)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.......+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 35677788888888888888888888888887776 667777888888876654443
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.27 E-value=0.049 Score=41.84 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=10.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMM 751 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m 751 (918)
+++.+...|...|++++|+..|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 233
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.22 E-value=5.4 Score=42.79 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=78.5
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFY 176 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 176 (918)
...|..++.---.....+.+...+..++..- |.-.-.|.....-=.+.|..+.+.++|++-.. +++.+...|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHH
Confidence 3355555544344444455556666665442 22223444555555567777777888877774 56666666666555
Q ss_pred HHh-ccCchHHHHHHHHHHHhC-CCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 177 ALC-KNIRTVEAESFAREMESQ-GFY-VDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 177 ~~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
.++ ..|+.+.....|+...+. |.. .....|...|..-..++++.....++++.++
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 443 446666677777766653 111 1344567777766777777777777777775
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.18 E-value=0.06 Score=41.35 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=47.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 761 VTFCILINGHIAAGEIDQAIGLFNQMNAD----GC-VPD-KTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 761 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888999999999888887754 21 122 46788888889999999999998887653
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.12 E-value=0.63 Score=48.17 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=53.6
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 722 MPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV----TFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 722 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
+.+...|+.+..+|.+.|++++|+..|++.++ +.|+.. +|..+..+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567888888899999999999999988887 466643 4777888888899999999998888874
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.95 Score=43.67 Aligned_cols=141 Identities=12% Similarity=0.063 Sum_probs=63.9
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 043758 735 LCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHV 814 (918)
Q Consensus 735 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 814 (918)
....|+..+|...|+...... +-+......++.+|...|+++.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344455555555555555431 1122233445555555566666655555544321111111122233444444444444
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcC
Q 043758 815 FSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHD-HVPCLSNCNWLLNILCQEK 879 (918)
Q Consensus 815 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 879 (918)
..+-.+.-. .| |...--.+...+...|+.+.|++.+-.+++.+ ...|..+-..++.++..-|
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444432 23 33344444445555555555555555544321 1334455555555555555
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.44 Score=47.98 Aligned_cols=96 Identities=7% Similarity=-0.039 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
++..+.-+|.+.+++.+|++..+..++.+ +++...+-.-..++...|+++.|...+++++... |.|..+-..|+.+-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34455555666666666666666666532 3344555555556666666777777777666665 555555556665555
Q ss_pred hcCCHHHH-HHHHHHHHhC
Q 043758 877 QEKHFHEA-QIVLDVMHKR 894 (918)
Q Consensus 877 ~~g~~~~A-~~~~~~~~~~ 894 (918)
+..++++. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 55544444 6666666554
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.06 E-value=0.28 Score=41.50 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 043758 790 GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK-RGFVPKKATYEHLLE 838 (918)
Q Consensus 790 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~ 838 (918)
...|+..++.+++.+|+..|++..|+++++...+ .+++-+..+|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566777777777777777777777777777654 355556677777776
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.03 E-value=0.093 Score=53.96 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHH
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA----TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCN 869 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 869 (918)
+...|+.+..+|...|++++|+..+++..+ +.|+.. .|..+..+|.+.|+.++|+..++++++.. ++. |.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~---f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLK---FS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chh---HH
Confidence 568899999999999999999999999886 567654 58889999999999999999999999863 222 22
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 870 WLLN--ILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 870 ~l~~--~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
.+.. .+..-.+.++..++++.+.+-|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1111 122233445777888888888764
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.00 E-value=1.8 Score=36.00 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=47.0
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 833 YEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 833 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
....+..+..+|+-+.-.+++..+...+ .++++....++.+|.+.|+..+|.+++.+.-++|..
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3444566788888888888888887655 888999999999999999999999999999999864
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=0.32 Score=46.35 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=40.7
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChh
Q 043758 772 AAGEIDQAIGLFNQMNAD--GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-GFVP-KKATYEHLLECFCANCLSI 847 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 847 (918)
+.|++..|...|...++. +-.-.+..+.+|..++...|++++|..+|..+.+. +-.| .+..+-.+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 345555555555555554 11122344445555555555555555555555431 1111 1223444444445555555
Q ss_pred hHHHHHHHHHh
Q 043758 848 PAFNMFKEMIV 858 (918)
Q Consensus 848 ~A~~~~~~~~~ 858 (918)
+|...+++..+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=1.4 Score=42.51 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=94.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|++.+|..+|+.+....+. +..+--.++.+|...|++++|..++..+....-.........-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 6677778888888877776544 344566777888888888888888877654321222222233456666666666666
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC--CCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ--GFYVDKLMYTSLINGYCSNRNMKMAMRLFF 227 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 227 (918)
.+-.+.-. -+.|...-..+...+...|+.++|...+-.+.++ |.. |...-..++..+.-.|.-+.+...++
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66666654 2335555566777777888888887666665543 333 66677777777777664444443333
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.6 Score=45.37 Aligned_cols=151 Identities=11% Similarity=0.009 Sum_probs=70.4
Q ss_pred hCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhH----HHHHHHHHhcCCHH
Q 043758 702 SNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF----CILINGHIAAGEID 777 (918)
Q Consensus 702 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~ 777 (918)
..|++.+|...++++. ..+|.|...++..=+++...|+.+.-...++++.-. -.||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL-~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLL-DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHH-HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3455555555555555 334445555555555666666665555555555432 22333222 11222333556666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 043758 778 QAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR---GFVPKKATYEHLLECFCANCLSIPAFNMFK 854 (918)
Q Consensus 778 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 854 (918)
+|.+.-++..+.+- .|.-...+....+--.|+.+++.++..+-... +..--...|....-.+...+.++.|+++++
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 66666555554211 13333334445555556666666555443321 111111223333333444555666666665
Q ss_pred H
Q 043758 855 E 855 (918)
Q Consensus 855 ~ 855 (918)
+
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.96 Score=45.70 Aligned_cols=63 Identities=16% Similarity=-0.029 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043758 506 AIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN 569 (918)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 569 (918)
.+++.+..++.+.+++..|+...++.+..+ ++|+...-.-..+|...|+++.|+..|+++++.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 344555566666666666666666666654 455555555556666666666666666666654
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=0.51 Score=45.07 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=47.3
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHHhhcCCC--CcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHH
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKICNAGVD--LNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFY 176 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~ 176 (918)
|+.-+. +.+.|++.+|...|...++.... -....+..|..++...|++++|..+|..+.+..+-.|.. ....-|..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 443333 23445566666666555544311 112244555555556666666666665555422222222 33334444
Q ss_pred HHhccCchHHHHHHHHHHHhC
Q 043758 177 ALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 177 ~~~~~g~~~~a~~~~~~~~~~ 197 (918)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 455555555565555555554
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.69 E-value=0.026 Score=34.52 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=27.6
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 043758 853 FKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQ 885 (918)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 885 (918)
+++.++.. |.|+.+|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45667776 889999999999999999999986
No 247
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.64 E-value=7.7 Score=41.67 Aligned_cols=132 Identities=8% Similarity=-0.044 Sum_probs=73.4
Q ss_pred CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 043758 167 ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKL-MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLI 245 (918)
Q Consensus 167 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 245 (918)
+...+..++.---.....+.+..+++.+... .|... -|......-.+.|..+.+..+|++-++. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3344444443333333445566666666654 23333 2344444445677777777778777653 444555555554
Q ss_pred HHH-HhcCChhHHHHHHHHHHhC-CCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 246 HGF-FKMGLFDKGWVLYSQMSDW-GFQ-PNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 246 ~~~-~~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
.-+ ...|+.+.....|+..... |.. .....|-..+..-..++++.....+++++++
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 433 2455666666667666554 322 2234555556555666777777777777775
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=4.2 Score=38.05 Aligned_cols=145 Identities=11% Similarity=0.052 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHh---CCC--CCChhhHHHH
Q 043758 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMES---QGF--YVDKLMYTSL 209 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~--~~~~~~~~~l 209 (918)
|+-....|..+|..+.|--.+++.-+ ..+..+++.|.+++++... .+- +.-...+...
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 33334456667777766666666544 2233455555555555322 110 0012234555
Q ss_pred HHHHhcCCChHHHHHHHHHHHh----cCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCccHhhHHHHHH
Q 043758 210 INGYCSNRNMKMAMRLFFRMLK----TGCEPDS-YTCNTLIHGFFKMGLFDKGWVLYSQMSDWG---FQPNMVTDLIMIS 281 (918)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~ 281 (918)
-+.+++...+.+|-..|.+-.. ..-.++. ..|...|-.+....++..|...++.--+.+ -..+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 5666777777776655544321 1111222 234455555556678888888888754432 1234556677777
Q ss_pred HHHhcCCHHHHHHHHH
Q 043758 282 NYCREGEVDAALMLLN 297 (918)
Q Consensus 282 ~~~~~g~~~~A~~~~~ 297 (918)
+| ..|+.+.+..++.
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 76 5678877766653
No 249
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.41 E-value=1.1 Score=39.72 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=77.8
Q ss_pred hhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHH
Q 043758 8 LIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDR 87 (918)
Q Consensus 8 ~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~ 87 (918)
.|++|++........+|...+++-- |.-.+.-|.+..+..++..++ ++|..=|+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~---------------WG~ALLELAqfk~g~es~~mi----------edAisK~ee 60 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTN---------------WGGALLELAQFKQGPESKKMI----------EDAISKFEE 60 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHH---------------HHHHHHHHHHHS-HHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHH---------------HHHHHHHHHhccCcchHHHHH----------HHHHHHHHH
Confidence 5788999999988888885444422 233444555666667777774 788888999
Q ss_pred HHhCCCCCChhhHHHHHHHhhchhc-----------HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHH
Q 043758 88 LISKNIVPIKLACVSILRGLFAEEK-----------FLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVN 156 (918)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (918)
++..+|. ...++..+..+|...+. |++|.+.|+++.+. .|+...|+.-+.... +|=+++.
T Consensus 61 AL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~ 131 (186)
T PF06552_consen 61 ALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHM 131 (186)
T ss_dssp HHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHH
T ss_pred HHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHH
Confidence 9988755 34577777777766542 66777777777765 678888888777763 3666666
Q ss_pred HHHh
Q 043758 157 IMRK 160 (918)
Q Consensus 157 ~~~~ 160 (918)
++.+
T Consensus 132 e~~~ 135 (186)
T PF06552_consen 132 EIHK 135 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.38 E-value=1.3 Score=47.99 Aligned_cols=115 Identities=13% Similarity=0.069 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHccCChhhHH
Q 043758 775 EIDQAIGLFNQMNADGCVPDKTVYN-TLLKGLCQAGRLSHVFSVFYSMHKR--GFVP-KKATYEHLLECFCANCLSIPAF 850 (918)
Q Consensus 775 ~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~~~~~~A~ 850 (918)
+.+.|.++++.+.+. -|+...|. .-.+.+...|++++|++.+++.... ..+. ....+.-+..++.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 455555555555553 23433332 2223444555666666666554321 1111 1123334444555556666666
Q ss_pred HHHHHHHhCCCCCCcc-cHHHHHHHHHhcCCH-------HHHHHHHHHHH
Q 043758 851 NMFKEMIVHDHVPCLS-NCNWLLNILCQEKHF-------HEAQIVLDVMH 892 (918)
Q Consensus 851 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~-------~~A~~~~~~~~ 892 (918)
..+..+.+.. .-+.. ..+..+-+|...|+. ++|.+++.+..
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6666655443 22222 223344444555555 55555555543
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.37 E-value=0.62 Score=49.50 Aligned_cols=155 Identities=16% Similarity=0.059 Sum_probs=84.9
Q ss_pred hchhcHHHHHHHHH-HHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHH
Q 043758 108 FAEEKFLEAFDYFI-KICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVE 186 (918)
Q Consensus 108 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 186 (918)
.-+++++++.+..+ .-.-..++ ..-.+.+++.+.+.|..+.|+++.+.-.. -+....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 44566766655554 11111222 33466777777777777777776555332 4555667777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 187 AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSD 266 (918)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 266 (918)
|.++.++. .+...|..|......+|+++-|...|++.. -|..|+-.|...|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77654322 256677788887778888887777776643 144555556667777766666666665
Q ss_pred CCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 267 WGFQPNMVTDLIMISNYCREGEVDAALMLLNS 298 (918)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 298 (918)
.| . ++....++.-.|+.++..+++.+
T Consensus 402 ~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 54 2 33344444555666666665544
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.35 E-value=2.6 Score=35.06 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=56.0
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCC
Q 043758 424 CKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKP 503 (918)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 503 (918)
.-.|..++..++....... .+..-++.+|-.....-+-+-..+.++.+-+.-....++++......+-.+- .
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n-----~ 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN-----K 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT------
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-----c
Confidence 3456777777777777653 3334444444433333322222233333222222233344444433333221 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 043758 504 SVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS 570 (918)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 570 (918)
+.......+..+.+.|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 22333444444555555555555555544322 3444444455555555555555555555554444
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.13 E-value=3.4 Score=44.79 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=62.8
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHH-HHHHHHccCChhHHHHHHHHHHHcC--CC-CcHHhHHHHHHHHHhcCCHHHH
Q 043758 704 GKKGTVQKIVLKVKDIEFMPNLYLYND-IFLLLCGVGRMDDAYDHFQMMKREG--LR-PNQVTFCILINGHIAAGEIDQA 779 (918)
Q Consensus 704 g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~--~~-p~~~~~~~li~~~~~~g~~~~A 779 (918)
...+.+.+++..+.+. -|+...|.. -.+.+...|+.++|++.|++..... .+ .....+.-+..++....++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 5666777777766632 244444433 3356666778888888887654311 11 1122344455566777788888
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHH-HHHHHcCCh-------hHHHHHHHHH
Q 043758 780 IGLFNQMNAD-GCVPDKTVYNTLL-KGLCQAGRL-------SHVFSVFYSM 821 (918)
Q Consensus 780 ~~~~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~ 821 (918)
...|..+.+. .. ....|.-+. .++...|+. ++|.+++.+.
T Consensus 325 ~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 8888777775 22 222333222 234455666 5555555444
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=94.12 E-value=0.9 Score=47.14 Aligned_cols=146 Identities=10% Similarity=0.049 Sum_probs=97.0
Q ss_pred ChhHHHHHHHHHHH-cCCCCcHH-hHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 740 RMDDAYDHFQMMKR-EGLRPNQV-TFCILINGHIA---------AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQA 808 (918)
Q Consensus 740 ~~~~A~~~~~~m~~-~~~~p~~~-~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 808 (918)
..+.|..+|.+... +.+.|+.. .|..+..++.. ..+..+|.++.+..++.+- -|+.....+..++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 45678888998872 23566644 45444444331 2245566777777777532 3677777888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHH--HHHHHHHhcCCHHHHH
Q 043758 809 GRLSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCN--WLLNILCQEKHFHEAQ 885 (918)
Q Consensus 809 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~ 885 (918)
|+++.|...|++... +.|+.. +|......+...|+.++|.+.+++..+.. |--..+-. ..+..|+.. ..++|.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-P~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-PRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-chhhHHHHHHHHHHHHcCC-chhhhH
Confidence 889999999999885 667665 45555556788899999999999988775 33333322 223355554 567777
Q ss_pred HHHHH
Q 043758 886 IVLDV 890 (918)
Q Consensus 886 ~~~~~ 890 (918)
.++.+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77764
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=13 Score=41.73 Aligned_cols=118 Identities=14% Similarity=0.201 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY--TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNY 283 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (918)
...-+....+...++-|+.+-+. .+..++.. .......-+.+.|++++|...|-+.+.. +.|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 34455556666666666665433 22222211 1222233344667777776666555432 1222 233445
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 284 CREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
.....+..-...++.+.+.|+ .+...-..|+.+|.+.++.++..++.+.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 555555555666666666663 3444556677777777777666665543
No 256
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.94 E-value=4.1 Score=35.80 Aligned_cols=124 Identities=19% Similarity=0.060 Sum_probs=66.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcch-hHHHHH--HHHHcCCCh
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIK-LACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCW-SYNVLI--DGLCYKGFL 148 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~g~~ 148 (918)
+..|+.++|+..|..+.+.|...-+ -+...........|+..+|...|+++-.....|-.. -...+- -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 7778888888888888877644211 233445555677788888888888876543333222 111111 123345566
Q ss_pred hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 149 DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
+....-.+-+.. .+-+.....-.+|.-+-.+.|++..|.+.|..+...
T Consensus 149 ~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 555555554433 221222222334444445556666666666665553
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.89 E-value=0.075 Score=35.06 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=9.9
Q ss_pred HHHHHHccCChhhHHHHHHHHHhC
Q 043758 836 LLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 836 l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
+..+|.+.|++++|.+.++++++.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.85 E-value=1.1 Score=38.37 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=49.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc
Q 043758 73 VALGNIEDALRHFDRLISKNIVP--IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY 144 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (918)
.+.|++++|.+.|+.+..+-+.. ...+.-.++.+|.+.+++++|+..+++.++.........|...+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 67788888888888887765331 3445667778888888888888888888877644333455555555543
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.80 E-value=4.3 Score=35.51 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=72.2
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043758 172 KSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM 251 (918)
Q Consensus 172 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 251 (918)
..++..+...+.+.....+++.+...+. .++..++.++..|++.+ ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555556667777777777766653 46667777777776543 2333343332 12334455567777777
Q ss_pred CChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 252 GLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCRE-GEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 252 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
+.++++.-++..+.. +...+..+... ++++.|.+++... .+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 777777777766522 11233333333 6777777776652 244567666665543
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.70 E-value=5.9 Score=41.55 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=25.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 730 DIFLLLCGVGRMDDAYDHFQMMKREGLRP--NQVTFCILINGHIAAGEIDQAIGLFNQM 786 (918)
Q Consensus 730 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 786 (918)
.+..++-+.|+.++|++.+.+|.+.. ++ +......|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34444444555555555555554321 11 1113334555555555555555555443
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.69 E-value=1.2 Score=38.03 Aligned_cols=60 Identities=8% Similarity=0.002 Sum_probs=30.2
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHHhhcCCCCc---chhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKICNAGVDLN---CWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
+..-.....+.|++++|++.|+.+...- +.+ ..+--.++.++.+.++++.|+..+++.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3334444455566666666665555432 211 12333445555555666666655555555
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.56 E-value=3.1 Score=36.37 Aligned_cols=126 Identities=9% Similarity=0.005 Sum_probs=69.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043758 728 YNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQ 807 (918)
Q Consensus 728 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 807 (918)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. . ++......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 3345556666667777777777777665 245556777777776543 3334444432 1 122333446666777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 808 AGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN-CLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
.+.++++.-++.++.. +...+..+... ++++.|.+.+.+ ..++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 7777777777766521 12222222222 666666666664 234556666665544
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.36 E-value=2.7 Score=43.85 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=28.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHh
Q 043758 138 LIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMES 196 (918)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 196 (918)
+...+.+.|+.++|++.++++.+..+...+......|+.++...+.+.+++.++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44444455555555555555544111111223444555555555555555555555543
No 264
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.34 E-value=17 Score=41.10 Aligned_cols=88 Identities=15% Similarity=0.036 Sum_probs=42.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHh---
Q 043758 512 IGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS-VQPGSYPYTALISGLVK--- 587 (918)
Q Consensus 512 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 587 (918)
...+.-.|.++.|.+.+-+.. +...+.+.+...+..|.-.+-..... ..+.... -.|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~--~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE--FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhc--cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 345566899999999888722 22456666666666554433322222 2222111 01112557778888876
Q ss_pred cCChhHHHHHHHHHHhC
Q 043758 588 KGMVDLGCMYLDRMLAD 604 (918)
Q Consensus 588 ~g~~~~a~~~~~~~~~~ 604 (918)
..++..|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 56778888888776654
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=1.8 Score=42.21 Aligned_cols=153 Identities=10% Similarity=-0.021 Sum_probs=104.8
Q ss_pred ccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHH----HHHHHhcCChh
Q 043758 180 KNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTL----IHGFFKMGLFD 255 (918)
Q Consensus 180 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~g~~~ 255 (918)
-.|+..+|...++++.+.-+ .|..+++-.=.+|.-+|+.......++++.-. ..||...|..+ .-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45777788888888887633 37777887788888889888888888887744 23454433332 22445788899
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN---LAPSVHCYTVLIDALYKHNRLMEVDELYK 332 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 332 (918)
+|++.-++..+.+ +.|.-...++...+.-.|++.++.+++..-...= .-.-...|-...-.++..+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888888776 5667777778888888889999888886544320 00011223333446677789999999996
Q ss_pred HHH
Q 043758 333 KML 335 (918)
Q Consensus 333 ~~~ 335 (918)
.-.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.10 E-value=22 Score=41.71 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=62.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChh
Q 043758 770 HIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA--TYEHLLECFCANCLSI 847 (918)
Q Consensus 770 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~ 847 (918)
+...+.+++|--.|+..-+. .-.+.+|..+|+|.+|+.+..++.. .-+.. +-..|..-+..++++-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccch
Confidence 34556666666665544221 2345667777788887777777631 11221 1255666777888888
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 848 PAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMH 892 (918)
Q Consensus 848 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 892 (918)
+|.+++.+.... ....+..|++...|++|.++...-.
T Consensus 1017 eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 888887776532 2345566677777777777665443
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.10 E-value=0.21 Score=32.93 Aligned_cols=29 Identities=14% Similarity=-0.023 Sum_probs=15.8
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
+|..+..+|...|++++|+++|+++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44455555555555555555555555543
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.05 E-value=4 Score=36.86 Aligned_cols=127 Identities=12% Similarity=0.024 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-----
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVY--NTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYE----- 834 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----- 834 (918)
.|..++.+.. .+.+ +.....+++........-..+ -.+...+..+|++++|..-++.... .|....+.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHH
Confidence 4555555443 3333 455555666654211111111 2334567889999999999988763 33333333
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 835 HLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 835 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.|.......|.+++|+..++.....+. .+......+++|...|+-++|+.-|+..++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344567888999999999987654321 34456678899999999999999999999887
No 269
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.77 E-value=6 Score=36.25 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 310 CYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+|--|..-+...|+.++|..+|+-...
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 444555555566666666666655544
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.72 E-value=2.5 Score=45.05 Aligned_cols=157 Identities=14% Similarity=0.066 Sum_probs=103.5
Q ss_pred HHHcCCChhHHHHHHH--HHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC
Q 043758 141 GLCYKGFLDEVLEVVN--IMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRN 218 (918)
Q Consensus 141 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 218 (918)
...-.++++.+.++.. .+.. .++ ....+.++..+-+.|-.+.|.++-.+ +.+ -.....+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~--~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP--NIP--KDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG--G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhcc--cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCC
Confidence 3445788888777665 2221 111 34467788888888999999887543 322 2344567899
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 219 MKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNS 298 (918)
Q Consensus 219 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 298 (918)
++.|.++.++ .++...|..|.......|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 9988887543 34667899999999999999999999987653 45677778889999888888887
Q ss_pred HhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 299 KVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKM 334 (918)
Q Consensus 299 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (918)
....| -+|....++.-.|+.++..+++.+-
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77655 2666777777889998888887543
No 271
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.64 E-value=22 Score=40.43 Aligned_cols=272 Identities=12% Similarity=0.027 Sum_probs=136.3
Q ss_pred cHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhc
Q 043758 47 SYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNA 126 (918)
Q Consensus 47 ~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 126 (918)
.....-..+..+|..++|++.- .+.|+++.|..++++.-.. +...++..-...+.+.+...
T Consensus 349 lH~~Aa~w~~~~g~~~eAI~hA----laA~d~~~aa~lle~~~~~---------------L~~~~~lsll~~~~~~lP~~ 409 (894)
T COG2909 349 LHRAAAEWFAEHGLPSEAIDHA----LAAGDPEMAADLLEQLEWQ---------------LFNGSELSLLLAWLKALPAE 409 (894)
T ss_pred HHHHHHHHHHhCCChHHHHHHH----HhCCCHHHHHHHHHhhhhh---------------hhcccchHHHHHHHHhCCHH
Confidence 3445556677788888887765 7778888888888776211 11122222222222221111
Q ss_pred CCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcc-------cHHHHHHH-HhccCchHHHHHHHHHHHhC-
Q 043758 127 GVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALH-------PYKSLFYA-LCKNIRTVEAESFAREMESQ- 197 (918)
Q Consensus 127 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~ll~~-~~~~g~~~~a~~~~~~~~~~- 197 (918)
-+.-++...-.-+-......++.+|..+.+++... -..|+.. .++++-.. ....|++++|..+.+...+.
T Consensus 410 ~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~-l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L 488 (894)
T COG2909 410 LLASTPRLVLLQAWLLASQHRLAEAETLIARLEHF-LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL 488 (894)
T ss_pred HHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHH-hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 00001111111111223467788888888777652 1222211 23333222 23457888888887776654
Q ss_pred ---CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHH---HH--HHHHhcCChhHH--HHHHHHHHhC
Q 043758 198 ---GFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNT---LI--HGFFKMGLFDKG--WVLYSQMSDW 267 (918)
Q Consensus 198 ---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---ll--~~~~~~g~~~~a--~~~~~~~~~~ 267 (918)
-..+....+..+..+..-.|++++|+.+.....+..-..++..|.. +. ..+...|....+ ...+......
T Consensus 489 ~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 489 PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2223455677777888889999999988877665432334443322 22 234556633222 2222222211
Q ss_pred ---CCC---ccHhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCcchH--HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 268 ---GFQ---PNMVTDLIMISNYCRE-GEVDAALMLLNSKVSSNLAPSVHCY--TVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 268 ---~~~---~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
..+ +-..++..+..++.+. +...++..-++--......|-.... ..|.......|+.++|...++++....
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 101 1233455555555551 1122222222222222111111122 256677788899999998888887643
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.58 E-value=11 Score=36.65 Aligned_cols=221 Identities=16% Similarity=0.065 Sum_probs=124.2
Q ss_pred hcHHHHHHHHHHHhhcCCC-CcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHH
Q 043758 111 EKFLEAFDYFIKICNAGVD-LNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAES 189 (918)
Q Consensus 111 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 189 (918)
+....+...+......... .....+......+...+++..+...+...............+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555554443311 123455566666666777777776666665310122333444445555555666667777
Q ss_pred HHHHHHhCCCCCChhhHHHHHH-HHhcCCChHHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 190 FAREMESQGFYVDKLMYTSLIN-GYCSNRNMKMAMRLFFRMLKTGCEP----DSYTCNTLIHGFFKMGLFDKGWVLYSQM 264 (918)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 264 (918)
.+.........+ ......... .+...|+++.|...+.+.... .| ....+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777666643332 122222222 566777777777777777542 22 2223333333455667777777777777
Q ss_pred HhCCCCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 265 SDWGFQP-NMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPS-VHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 265 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
.... +. ....+..+...+...++.+.|...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7653 22 35566667777777777888888777777643 22 233444444444556677777777666553
No 273
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.53 E-value=1.1 Score=42.55 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCC----------------ChHHHHHH
Q 043758 504 SVAIYDAIIGHLCK-----EKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNR----------------KPIEACQL 562 (918)
Q Consensus 504 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~A~~~ 562 (918)
|-.+|-..+..+.. .+..+-....++.|.+.|+..|..+|+.++..+=+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444433 2455556666777777788788888887777654422 22345556
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHhcCC
Q 043758 563 FEKMKENSVQPGSYPYTALISGLVKKGM 590 (918)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (918)
+++|..+|+.||..+-..|+.++.+.+-
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 6666666666666655555655555443
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.38 E-value=8.7 Score=38.49 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCCCh--hhHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCcHHhHHHHH
Q 043758 708 TVQKIVLKVKDIEFMPNL--YLYNDIFLLLCGVGR--MDDAYDHFQMMKREGLRPNQVTFCILI 767 (918)
Q Consensus 708 ~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li 767 (918)
.++.+++.+.+.|+..+. .....++........ ...+.++++.+.+.|+++....|..+.
T Consensus 161 ~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 161 RMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345555555555554432 223333322222211 346777777888877777766665443
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.19 E-value=2.8 Score=41.46 Aligned_cols=126 Identities=9% Similarity=-0.047 Sum_probs=80.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHc--CCCC-cH------Hh
Q 043758 697 FSAVFSNGKKGTVQKIVLKVKDIEF---MP--NLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE--GLRP-NQ------VT 762 (918)
Q Consensus 697 ~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p-~~------~~ 762 (918)
..+....+.++++.+.|+...+... .| ....+-.|.+.|.+..++++|.-+..+..+. .+.. |. .+
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 3344444556666666665432221 11 2467889999999999999998877765432 1221 11 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNAD----GCVPD-KTVYNTLLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
...+.-++...|....|.+..++..+. |-.+. ..+...+.+.|...|+.+.|..-+++..
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233445677888888888887776553 43332 3556678889999999999988887654
No 276
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=22 Score=39.39 Aligned_cols=355 Identities=11% Similarity=0.048 Sum_probs=186.9
Q ss_pred cccCChHHHHHHHHHHH--------HcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 043758 481 CKWGNLDSALDILDQME--------VRGPKPSVAIYD-----AIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMI 547 (918)
Q Consensus 481 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (918)
.+..++++-..+..... ..|++.+..-|. .+++-+...+.+..|+++-.-+...-... ...|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 34445555444444332 235555444443 34566677788888888877765321111 45555565
Q ss_pred HHHHcCCCh--HHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHH
Q 043758 548 NGYLQNRKP--IEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFV----PNVVLYTALINHFL 621 (918)
Q Consensus 548 ~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 621 (918)
.-+.+..+. +++.+...+=..... -...+|..+...-...|+.+.|..+++.=...+.. .+..-+..-+.-+.
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 555554322 223333332222222 34456777777777889999998877643222111 12223344455556
Q ss_pred HcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchh-------
Q 043758 622 RAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKS------- 694 (918)
Q Consensus 622 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 694 (918)
..|+.+-...++-.+...- .... ++..+...|.....+.
T Consensus 558 es~d~~Li~~Vllhlk~~~---~~s~-------------------------------l~~~l~~~p~a~~lY~~~~r~~~ 603 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKL---NRSS-------------------------------LFMTLRNQPLALSLYRQFMRHQD 603 (829)
T ss_pred hcCCchhHHHHHHHHHHHH---HHHH-------------------------------HHHHHHhchhhhHHHHHHHHhhc
Confidence 6677766666555554210 0000 0111111111111110
Q ss_pred --hhHHHHHhCCChhHH-HHHHHHHHh-cCCCCChhhHHHHHHHHHccCCh---hHH-------HHHHHHHHH-cCCCCc
Q 043758 695 --TAFSAVFSNGKKGTV-QKIVLKVKD-IEFMPNLYLYNDIFLLLCGVGRM---DDA-------YDHFQMMKR-EGLRPN 759 (918)
Q Consensus 695 --~~~~~~~~~g~~~~a-~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~---~~A-------~~~~~~m~~-~~~~p~ 759 (918)
.+.+.+....+.... .-.++.... ..+.+-..........+++.... ++| +.+.+.+.. .|....
T Consensus 604 ~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~ 683 (829)
T KOG2280|consen 604 RATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFV 683 (829)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 011111111111111 111111000 00122223333444455544331 111 222222221 233344
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 760 QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLEC 839 (918)
Q Consensus 760 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 839 (918)
..+.+--+.-+..-|+-.+|.++-.+.+- ||-..|-.-+.+++..++|++-.++-+.+.. +-.|.-++.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHH
Confidence 44666667778888999999888777643 7888888889999999999988777666541 3345667788
Q ss_pred HHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 840 FCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDV 890 (918)
Q Consensus 840 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 890 (918)
|.+.|+.++|.+++.+.. +.+ -.+.+|.+.|++.+|.++--+
T Consensus 754 c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 899999999998887642 222 588999999999999887654
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.08 E-value=0.55 Score=45.62 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
.++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..++++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 455556666666666666666666665421 2255566666666666666666666666554
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.08 E-value=3.7 Score=40.71 Aligned_cols=202 Identities=10% Similarity=0.005 Sum_probs=115.0
Q ss_pred hHHHHHHHhhchhcHHHHHHHHH-HHhhc-CCCC---cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCc---cc
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFI-KICNA-GVDL---NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPAL---HP 170 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~-~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~ 170 (918)
++..+..+++..|.+++++..-- +|.-. ..+. -...|..+.+++-+.-++.+++.+-..-....|..|.. ..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44455666778888877765432 11110 0011 11345556666666666666666666554433444421 23
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc----CCCCChhhH
Q 043758 171 YKSLFYALCKNIRTVEAESFAREMESQGF-----YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT----GCEPDSYTC 241 (918)
Q Consensus 171 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~ 241 (918)
..++..++.-.+.++++.+.|+...+-.- .....+|-.|...|.+..|+++|+-...+..+. ++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 33455666666778888888887655311 112346888888888889999888776665432 221111123
Q ss_pred H-----HHHHHHHhcCChhHHHHHHHHHHhC----CCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 242 N-----TLIHGFFKMGLFDKGWVLYSQMSDW----GFQ-PNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 242 ~-----~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
. .|.-++-..|.+..|.+.-++..+. |-. .-......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2333556777777777777766443 311 113344556777888888888777776543
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.07 E-value=12 Score=35.88 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=29.2
Q ss_pred hcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043758 587 KKGMVDLGCMYLDRMLAD--GFVPNVVLYTALINHFLRAGEFEFASRLENLMVTN 639 (918)
Q Consensus 587 ~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 639 (918)
..|++++|.+.|+.+... +.+-...+.-.++-++.+.++++.|+...++.++.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 456666666666666544 11223344445555566666666666666665543
No 280
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.88 E-value=1.3 Score=42.15 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=51.8
Q ss_pred ChhhHHHHHHHHHcc-----CChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 043758 724 NLYLYNDIFLLLCGV-----GRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVY 798 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 798 (918)
|-.+|-..+..+... +.++=....++.|.+-|+..|..+|+.|+..+-+-.- .|. ..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHH
Confidence 445555555555433 3344444556666667777777777777665543221 111 001
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 043758 799 NTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCL 845 (918)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 845 (918)
....--|-+ +-+=++.++++|...|+.||..+-..++.++.+.+-
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 112345666666666666666666666666655553
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.87 E-value=0.29 Score=30.43 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=22.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 867 NCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 867 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
+|..|+.+|.+.|+|++|.+++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367899999999999999999998654
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.56 E-value=9.2 Score=33.74 Aligned_cols=124 Identities=11% Similarity=0.032 Sum_probs=74.5
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh-hHHHH--HHHHHhcCC
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKL-MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY-TCNTL--IHGFFKMGL 253 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--l~~~~~~g~ 253 (918)
+++.++.++|..-|..+.+.|...-+. ..-.........|+-..|...|+++-.....|-.. ....| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356677788888888887765431111 12223344566788888888888876553333322 11111 123456777
Q ss_pred hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
++......+.+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777777776665544333444555666666778888888888877765
No 283
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.36 E-value=0.18 Score=30.85 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=19.5
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhchhcHHHHH
Q 043758 85 FDRLISKNIVPIKLACVSILRGLFAEEKFLEAF 117 (918)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 117 (918)
|+++++.+|. ++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555544 5666666666666666666664
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.31 E-value=1.3 Score=39.75 Aligned_cols=124 Identities=11% Similarity=0.160 Sum_probs=78.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 043758 768 NGHIAAGEIDQAIGLFNQMNADGCVPDK-----TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK-KATYEHLLECFC 841 (918)
Q Consensus 768 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 841 (918)
.-+.+.|++++|..-|..++.. +++.. ..|..-.-++.+.+.++.|+.-..+.++ +.|+ ...+..-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 4467889999999999988885 33322 3455555567788888888888888775 3443 234444455788
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHHHHhCC
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC--QEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~ 895 (918)
+.-.+++|++-++++++.. |....+....+++=- ...+-..-.+++..+++.|
T Consensus 180 k~ek~eealeDyKki~E~d-Ps~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD-PSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC-cchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888999999999988876 444444444333322 2222222334555666555
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.04 E-value=39 Score=39.93 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh--cHHHHHHHHHHHh
Q 043758 78 IEDALRHFDRLISKNIVPIKLACVSILRGLFAEE--KFLEAFDYFIKIC 124 (918)
Q Consensus 78 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 124 (918)
+...-++....+.+. .|+ ...-.++.+|.+.+ ..++|+....+..
T Consensus 773 v~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 773 VNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344444444444433 123 23446667777666 5566655555544
No 286
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.91 E-value=19 Score=36.15 Aligned_cols=132 Identities=20% Similarity=0.253 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc--C----CChhHHHHHHHHHHhcCCCC--CCcccHHHHHHHHhccCc
Q 043758 112 KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY--K----GFLDEVLEVVNIMRKKKGLV--PALHPYKSLFYALCKNIR 183 (918)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~ 183 (918)
.+++.+.+++.+.+.|+..+..+|-.....+.. . ....+|.++|+.|.++.++- ++..++..++.. ...+
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 356667888888888888776655543333322 1 23556788888888744432 334444455433 3333
Q ss_pred ----hHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcC-CC--hHHHHHHHHHHHhcCCCCChhhHHHHH
Q 043758 184 ----TVEAESFAREMESQGFYVDKL-MYTSLINGYCSN-RN--MKMAMRLFFRMLKTGCEPDSYTCNTLI 245 (918)
Q Consensus 184 ----~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g~--~~~A~~~~~~m~~~~~~p~~~~~~~ll 245 (918)
.+.++.+|+.+.+.|+..... -+.+-+-++... .. ..++.++++.+.+.|+++....|..+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 245677777777766653322 222222222221 11 346667777777777776666555543
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.49 E-value=25 Score=36.81 Aligned_cols=118 Identities=14% Similarity=0.028 Sum_probs=71.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-------
Q 043758 760 QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP---DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK------- 829 (918)
Q Consensus 760 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------- 829 (918)
..++..+...+.+.|.++.|...+..+...+..+ ++.....-+..+-..|+..+|+..+++..+..+...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 3467777888888899998888888877642111 334444556677778888888888877765211111
Q ss_pred -------------------HHHHHHHHHHHH-------cc------CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 043758 830 -------------------KATYEHLLECFC-------AN------CLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ 877 (918)
Q Consensus 830 -------------------~~~~~~l~~~~~-------~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (918)
...-.....++. .. +..+++...+..+.... |.....|..++..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD-PSWEKAWHSWALFNDK 304 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHH
Confidence 000111111222 22 56677778888877665 5566677776666553
Q ss_pred c
Q 043758 878 E 878 (918)
Q Consensus 878 ~ 878 (918)
.
T Consensus 305 ~ 305 (352)
T PF02259_consen 305 L 305 (352)
T ss_pred H
Confidence 3
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.46 E-value=4.4 Score=37.01 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH--
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV--TFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNT-- 800 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~-- 800 (918)
..+..+.+.|.+.|+.+.|++.|.++.+....|... .+..+|......+++..+.....++...--.+ |...-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 567778888888888888888888887765544433 45667777777788888877777765541111 1111111
Q ss_pred --HHHHHHHcCChhHHHHHHHHHH
Q 043758 801 --LLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 801 --l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
-.-.+...+++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1112345567777766665543
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.80 E-value=6.2 Score=35.18 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=87.5
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 744 AYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 744 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
-.+++..+.+.+++|+...+..+++.+.+.|++... ..+++.++-+|.......+-.+. +.+..+.++--+|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 356677777888999998999999999999886544 44455566677665555443332 233334443333332
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 824 RGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 824 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
. +. ..+..++..+...|++-+|+++....... +......+..+-.+.++...-..+++-..+++.
T Consensus 87 R-L~---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 87 R-LG---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred H-hh---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 1 00 13455667778889999999998875332 222234566666677777777777777766653
No 290
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.74 E-value=20 Score=34.61 Aligned_cols=49 Identities=20% Similarity=0.059 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 589 GMVDLGCMYLDRMLADGFV-PNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 589 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
+....+...+......... .....+......+...+++..+...+....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL 86 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4445555555555443211 124555556666666666666666666554
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.67 E-value=2.6 Score=41.08 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=33.5
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 043758 171 YKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRML 230 (918)
Q Consensus 171 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 230 (918)
+..++..+..+|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334455555555666666666665555433 55556666666666666666666655554
No 292
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.65 E-value=23 Score=40.11 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=10.6
Q ss_pred HHHHccCChhHHHHHHHH
Q 043758 733 LLLCGVGRMDDAYDHFQM 750 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~ 750 (918)
..+.-.|+++.|++++-+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 344445777777777665
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.25 E-value=2.7 Score=37.84 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=57.6
Q ss_pred hhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHH
Q 043758 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDA 81 (918)
Q Consensus 2 ~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A 81 (918)
.||.+|.+++|..-+..++...|+... ..-.+|..+ .| -++.+.++.+.|
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~---------------------e~rsIly~N----ra-----aa~iKl~k~e~a 153 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTST---------------------EERSILYSN----RA-----AALIKLRKWESA 153 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccH---------------------HHHHHHHhh----hH-----HHHHHhhhHHHH
Confidence 367777777777777777777665221 111111000 01 112566677777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 82 LRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
+.-...+++.++. ...+......+|.+..++++|+.-|.++.+..
T Consensus 154 I~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 154 IEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 7777777776643 23344455567777888888888888888764
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.08 E-value=14 Score=32.56 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=9.4
Q ss_pred HhcCCChHHHHHHHHHHHh
Q 043758 213 YCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 213 ~~~~g~~~~A~~~~~~m~~ 231 (918)
+++.|++.+|+.+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555443
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.08 E-value=4.8 Score=36.73 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCccHhhHHH
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS--YTCNTLIHGFFKMGLFDKGWVLYSQMSDW---GFQPNMVTDLI 278 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ 278 (918)
..+..+...|++.|+.+.|++.|.++.+....+.. ..+..+++.....+++..+...+.+.... +-+++......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45778888889999999999999998876444332 35667778888888888888887776543 21222111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHh
Q 043758 279 MIS--NYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 279 l~~--~~~~~g~~~~A~~~~~~~~ 300 (918)
... .+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1334567777777775543
No 296
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.41 E-value=1.4 Score=42.96 Aligned_cols=89 Identities=12% Similarity=-0.049 Sum_probs=40.9
Q ss_pred HhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH
Q 043758 106 GLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV 185 (918)
Q Consensus 106 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 185 (918)
-|.++|++++|++.|....... +.|..++..-..+|.+...+..|..=.+.... .. ..-...|...+.+--..|+.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-Ld-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-LD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-hh-HHHHHHHHHHHHHHHHHhhHH
Confidence 3455555555555555544332 22445555555555555555444444444332 00 011223444444444445555
Q ss_pred HHHHHHHHHHhC
Q 043758 186 EAESFAREMESQ 197 (918)
Q Consensus 186 ~a~~~~~~~~~~ 197 (918)
+|.+-++...+.
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 555555555544
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.33 E-value=0.81 Score=28.42 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=14.3
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHH
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKI 123 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~ 123 (918)
|..+..+|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.97 E-value=19 Score=32.16 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=64.3
Q ss_pred HHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCC
Q 043758 119 YFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQG 198 (918)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 198 (918)
..+.+...+++|+...+..++..+.+.|.+....+++.. ++-+|.......+-. -.+.+..+.++--+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHH--hHccChHHHHHHHHHHHH-
Confidence 334444556666666666666666666665444443332 333343333222211 112334455555555553
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 199 FYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 199 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
=...+..++..+...|++-+|+++....... +......++.+..+.++...--.+++-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2224556666666777777777766554221 22223344555555555444444444433
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.97 E-value=0.74 Score=27.97 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999887654
No 300
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.61 E-value=52 Score=36.74 Aligned_cols=346 Identities=13% Similarity=0.078 Sum_probs=180.5
Q ss_pred hcCCCCChhhHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCH---HHHHHHHHHHhhC
Q 043758 231 KTGCEPDSYTCNT-----LIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEV---DAALMLLNSKVSS 302 (918)
Q Consensus 231 ~~~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~ 302 (918)
..|++.+..-|.. ++.-+...+.+..|.++-..+...-..- ..++......+.+..+. +.+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3455555544443 4556667778888888777765332122 45666666666655322 2223333333321
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCCh
Q 043758 303 NLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVA----PDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDP 378 (918)
Q Consensus 303 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 378 (918)
-....+|..+..-....|+++-|..+++.=...+.. .+...+...+.-+...+|.+...+++..+.+.-
T Consensus 504 --~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~----- 576 (829)
T KOG2280|consen 504 --LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL----- 576 (829)
T ss_pred --CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-----
Confidence 134566777777777888888888776532211100 122234445555556666666555555444321
Q ss_pred hhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHH--------HHHccCChHHHHHHHH--HHHHC-CCCCC
Q 043758 379 LARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYIS--------ALCKGGKYEKAYVCLF--QLVNF-GYRPL 447 (918)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--------~~~~~g~~~~A~~~~~--~~~~~-~~~~~ 447 (918)
....|.......| .....|..+++ .+..+++-.+++..|. ..... .+.+-
T Consensus 577 ------------------~~s~l~~~l~~~p-~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r 637 (829)
T KOG2280|consen 577 ------------------NRSSLFMTLRNQP-LALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGR 637 (829)
T ss_pred ------------------HHHHHHHHHHhch-hhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhccc
Confidence 1111111111111 11111221111 1112222222222221 11100 01122
Q ss_pred cccHHHHHHHHHhcCChh-hHHHHHHHhhcccCccccCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043758 448 VFTCNTLIKCFYQVGFLE-GANAIVELMQDTEGNCKWGNLDSALDILDQMEV-RGPKPSVAIYDAIIGHLCKEKRILEAE 525 (918)
Q Consensus 448 ~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 525 (918)
.........++++..... ++..+- +...-+.+.+.+.. .|......+.+--+.-+...|+..+|.
T Consensus 638 ~~~lk~~a~~~a~sk~~s~e~ka~e-------------d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ 704 (829)
T KOG2280|consen 638 IPALKTAANAFAKSKEKSFEAKALE-------------DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAE 704 (829)
T ss_pred chhHHHHHHHHhhhhhhhhHHHHHH-------------HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHH
Confidence 223333444444433311 111111 11112222222222 122223334455566677789999999
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 526 DMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADG 605 (918)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 605 (918)
++-.+.. -||-..|-.-+.++...+++++-+++-+... .+.-|...+.+|.+.|+.++|.+++.+...
T Consensus 705 ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-- 772 (829)
T KOG2280|consen 705 QLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-- 772 (829)
T ss_pred HHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC--
Confidence 9888776 6888999999999999999988666554432 245677889999999999999999876532
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043758 606 FVPNVVLYTALINHFLRAGEFEFASRLENL 635 (918)
Q Consensus 606 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 635 (918)
.. -...+|.+.|++.+|.+.--+
T Consensus 773 ---l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 773 ---LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ---hH----HHHHHHHHhccHHHHHHHHHH
Confidence 11 467889999999998876544
No 301
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.93 E-value=0.84 Score=25.77 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHH
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLD 889 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~ 889 (918)
.....++.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778899999999999988875
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.64 E-value=4.5 Score=43.10 Aligned_cols=132 Identities=22% Similarity=0.185 Sum_probs=79.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043758 134 SYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGY 213 (918)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 213 (918)
..+.++..+.++|..++|+++-.. |+ . -.....+.|+++.|.++..+.. +..-|..|..+.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D--------~d--~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD--------PD--Q---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC--------hh--h---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 445566667777777766654211 11 1 2233446677777776654432 456688888888
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 043758 214 CSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAAL 293 (918)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 293 (918)
...|++..|.+.|.+... |..|+-.+...|+.+....+-....+.| ..| ...-+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHH
Confidence 888888888888766542 4455666666777666555555555554 222 2233456677777777
Q ss_pred HHHHHH
Q 043758 294 MLLNSK 299 (918)
Q Consensus 294 ~~~~~~ 299 (918)
+++.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 776543
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.48 E-value=67 Score=36.84 Aligned_cols=228 Identities=13% Similarity=0.028 Sum_probs=113.5
Q ss_pred hhhhhhHhcCChHHHHHHHHHHHhCCCCCChh-------hHHHHH-HHhhchhcHHHHHHHHHHHhhcC----CCCcchh
Q 043758 67 LYQNDFVALGNIEDALRHFDRLISKNIVPIKL-------ACVSIL-RGLFAEEKFLEAFDYFIKICNAG----VDLNCWS 134 (918)
Q Consensus 67 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ 134 (918)
++.+.+.-..++.+|..+..++...-..|+.. .|+++- .+....|++++|.++-+.....- ..+....
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 33444566677777777777665432222211 233222 12345678888888777765432 1233445
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHH-----HHHHhccCc--hHHHHHHHHHHHhC---CCC---C
Q 043758 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSL-----FYALCKNIR--TVEAESFAREMESQ---GFY---V 201 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~g~--~~~a~~~~~~~~~~---~~~---~ 201 (918)
+..+..+..-.|++++|+.+.....+ .--.-+...+... ...+...|. +.+.+..|...... ..+ +
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 66666777778888888877766554 2112233333222 223455663 33344444444332 111 1
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC--CCCCh--h--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc----
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG--CEPDS--Y--TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQP---- 271 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~--~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---- 271 (918)
-..++..+..++.+ ++.+..-.....+.| ..|.. . .+..|+......|++++|...++++......+
T Consensus 579 ~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 579 LVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred HHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 22344555555554 333333333322211 12222 2 22356667778888888888877776543222
Q ss_pred cHhhHHHHH--HHHHhcCCHHHHHHHHHH
Q 043758 272 NMVTDLIMI--SNYCREGEVDAALMLLNS 298 (918)
Q Consensus 272 ~~~~~~~l~--~~~~~~g~~~~A~~~~~~ 298 (918)
+..+....+ ......|+...|.....+
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 211111122 223455777776666554
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.21 E-value=1.1 Score=27.30 Aligned_cols=30 Identities=17% Similarity=-0.032 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+|..++.+|...|++++|...+++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468889999999999999999999988754
No 305
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.06 E-value=69 Score=36.55 Aligned_cols=49 Identities=6% Similarity=-0.154 Sum_probs=28.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHH
Q 043758 513 GHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFE 564 (918)
Q Consensus 513 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 564 (918)
..+...|....|...+..+... .+......+.......|.++.++....
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 4455667777777777776653 233334444444455666666655443
No 306
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.50 E-value=68 Score=35.98 Aligned_cols=116 Identities=11% Similarity=0.050 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHCCCCCcHHHHHHHHH--H-HHcCCChHHHHHHHHHHHh-------CCCCCCchhHHHHHHHHHhcC-
Q 043758 521 ILEAEDMFKRMLKAGIDPDEVFFTTMIN--G-YLQNRKPIEACQLFEKMKE-------NSVQPGSYPYTALISGLVKKG- 589 (918)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g- 589 (918)
...|.+.++...+.|. .........+. + +....+++.|+..|+.+.+ ++ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 3456666666665541 11111111111 2 3345667777777776655 44 2234455555665532
Q ss_pred ----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCC
Q 043758 590 ----MVDLGCMYLDRMLADGFVPNVVLYTALINHFLR-AGEFEFASRLENLMVTNQI 641 (918)
Q Consensus 590 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~ 641 (918)
+.+.|..++....+.| .|+....-..+.-... ..+...|.++|....+.|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 4566778887777766 3343333222221111 1345677777777765543
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.49 E-value=25 Score=31.01 Aligned_cols=50 Identities=24% Similarity=0.169 Sum_probs=22.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 250 KMGLFDKGWVLYSQMSDWGFQPN-MVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 250 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
..++.+++..++..+... .|. ...-..-...+...|++.+|..+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444555555555555433 222 11111222334455555555555555544
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.36 E-value=24 Score=32.10 Aligned_cols=86 Identities=8% Similarity=-0.023 Sum_probs=38.0
Q ss_pred HHHcCCChhHHHHHHHHHHhcCCCCCCcccHH-----HHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 043758 141 GLCYKGFLDEVLEVVNIMRKKKGLVPALHPYK-----SLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS 215 (918)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 215 (918)
.+...|++++|...++.... .|....+. .|.+...+.|.+++|...++.....++ .......-.+++..
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 34455555555555555543 11222222 222334445555555555555444322 11112222344555
Q ss_pred CCChHHHHHHHHHHHhc
Q 043758 216 NRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 216 ~g~~~~A~~~~~~m~~~ 232 (918)
.|+-++|+.-|+...+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555544
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.81 E-value=38 Score=32.99 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCHHHHH
Q 043758 542 FFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD-----GFVPNVVLYT 614 (918)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 614 (918)
+++.....|..+|.+.+|.++.+..+..+ +.+...+-.++..+...|+--.+.+-++++.+. |+..+-.+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34556667888888888888888887764 556677777888888888877777777666443 6555554443
No 310
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.10 E-value=2.4 Score=27.69 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 869 NWLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 869 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
..|+.+|...|+.+.|+++++.+...|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4588999999999999999999986553
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.03 E-value=2.3 Score=25.79 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 043758 728 YNDIFLLLCGVGRMDDAYDHFQMMKR 753 (918)
Q Consensus 728 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 753 (918)
|..+..+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444444
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.72 E-value=2.3 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.008 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
.+|..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788999999999999999999887653
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.36 E-value=2.2 Score=27.36 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
.+++.|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35778899999999999999999887653
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.33 E-value=10 Score=37.07 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=77.9
Q ss_pred hHHHHHhCCChhHHHHHHHHHHh----------cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH----
Q 043758 696 AFSAVFSNGKKGTVQKIVLKVKD----------IEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV---- 761 (918)
Q Consensus 696 ~~~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---- 761 (918)
+.+.+.....++.-.....++.. .|.+....+...++..-....++++++..+-++..+ |+..
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~ 101 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRN 101 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcC---cchhhhcc
Confidence 45555556666665555534432 233334455555555555667788888877777653 3321
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 762 -TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 762 -~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
+-..+++.|. .-++++++.+...=++.|+-||..+.+.+++.+.+.+++.+|.++...|..
T Consensus 102 ~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 102 WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 1122333332 346777887777777778888888888888888888888888888777664
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.28 E-value=8 Score=33.33 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=58.3
Q ss_pred HHHHHHHHHH---HHcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHH
Q 043758 796 TVYNTLLKGL---CQAGRLSHVFSVFYSMHKRGFVPKKA---TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCN 869 (918)
Q Consensus 796 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 869 (918)
...+.|++.. ...++.+++..++..|.- +.|+.. ++...+ +...|++.+|..++.++.+.+ +-.+-.-.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~-~~~p~~kA 82 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA-GAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC-CCchHHHH
Confidence 4445555443 457888899998888874 566554 444444 578889999999999887654 22233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 870 WLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 870 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.++.++...|+.+ =+..-+.+++.|
T Consensus 83 L~A~CL~al~Dp~-Wr~~A~~~le~~ 107 (153)
T TIGR02561 83 LLALCLNAKGDAE-WHVHADEVLARD 107 (153)
T ss_pred HHHHHHHhcCChH-HHHHHHHHHHhC
Confidence 5666666666633 123444445555
No 316
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.89 E-value=50 Score=31.64 Aligned_cols=211 Identities=17% Similarity=0.200 Sum_probs=100.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHC---CCC--CCcccHHHHHHHHHhcCChhhHHHHHHHhhcc--------------
Q 043758 417 TIYISALCKGGKYEKAYVCLFQLVNF---GYR--PLVFTCNTLIKCFYQVGFLEGANAIVELMQDT-------------- 477 (918)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------- 477 (918)
..+|....+.+++++....+++++.- .+. -+..+.++++.-.+.+.+.+--.++++.-...
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 44555555666666666665555421 111 12234445554444444443333333322221
Q ss_pred ----cCccccCChHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCcHH
Q 043758 478 ----EGNCKWGNLDSALDILDQMEVRGPK-----------PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKA-GIDPDEV 541 (918)
Q Consensus 478 ----~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ 541 (918)
..+...+.+..-..++.++...-.. .-..+|..-+..|....+-.....++++.... ..-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3344445555555565555432110 02346777788888888888888888876642 2235544
Q ss_pred HHHHHHHHH-----HcCCChHHHHHHH-HHHHh---CCCCCCchh---HHHHHHHHHhcCChhHHHHHHHHHHhC--CCC
Q 043758 542 FFTTMINGY-----LQNRKPIEACQLF-EKMKE---NSVQPGSYP---YTALISGLVKKGMVDLGCMYLDRMLAD--GFV 607 (918)
Q Consensus 542 ~~~~l~~~~-----~~~~~~~~A~~~~-~~~~~---~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~ 607 (918)
... +|+-| .+.|.+++|..-| +.... .| .|...+ |..|...+.+.|-- -|+.-... .-.
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNd 301 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKND 301 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCC
Confidence 433 33333 4567787775443 33332 23 222221 33344444444310 01110111 123
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043758 608 PNVVLYTALINHFLRAGEFEFASRLENL 635 (918)
Q Consensus 608 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 635 (918)
|.......++.+|.. +++.+..+++..
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 556677778887754 455554444443
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.84 E-value=10 Score=29.67 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043758 779 AIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 779 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
+.+-++.+....+.|++....+.+++|.+-+++.-|+++++-..
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555444
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.62 E-value=1.9 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=25.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 867 NCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 867 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
++..++.++.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46778999999999999999999988754
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.81 E-value=7.9 Score=30.31 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 813 HVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 813 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
++.+-++.+....+.|++.+..+.+.+|.|.+++..|.++++....+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45556666766678899999999999999999999999999987633
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.58 E-value=11 Score=33.80 Aligned_cols=108 Identities=13% Similarity=0.020 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh----------cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC--
Q 043758 79 EDALRHFDRLISKNIVPIKLACVSILRGLFAEE----------KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG-- 146 (918)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 146 (918)
+.|.+-++.....+|. |...++....+|.... -+++|+.-|++++... |....++..+..++...+
T Consensus 8 E~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhh
Confidence 5566666665555544 6666666666654443 3455666666666664 334467777777776543
Q ss_pred --C-------hhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 147 --F-------LDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 147 --~-------~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
+ +++|.+.|+.... ..|+...|+.-+.+.. .|-++..++.++
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred cCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 3 3334444444433 4577777766665432 345555555554
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.53 E-value=21 Score=28.38 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 778 QAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLE 838 (918)
Q Consensus 778 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (918)
+..+-++.+....+.|++....+.+.+|.+-+++..|+++++-...+ ..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44455555555567777777777777777777777777777766643 2222225555543
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.96 E-value=4.2 Score=24.47 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=8.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSM 821 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~ 821 (918)
.+...+...|++++|++.+++.
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 3334444444444444444443
No 323
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.78 E-value=82 Score=32.86 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=35.0
Q ss_pred chhhhHHHHHhCCChhHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 043758 692 TKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMP---NLYLYNDIFLLLCGVGRMDDAYDHFQMMKR 753 (918)
Q Consensus 692 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 753 (918)
........+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++....
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445556666677777777766666433221 233333344555556666777776666655
No 324
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.06 E-value=32 Score=33.80 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=57.7
Q ss_pred cCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC--CCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCh
Q 043758 126 AGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK--GLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDK 203 (918)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 203 (918)
.|.+....+...++..-....+++.+...+-+++... ...|+ .+-..+++.+.+ -+++++..++..-+.-|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3444444455555555555667777777666665410 01111 122223333322 3555666666666666777777
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
.+++.+|+.+.+.+++.+|.++...|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777777776666655554
No 325
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.03 E-value=81 Score=32.36 Aligned_cols=80 Identities=10% Similarity=-0.106 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc---CCChhHHHHH
Q 043758 78 IEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY---KGFLDEVLEV 154 (918)
Q Consensus 78 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 154 (918)
.+.-+.+++++++.++. +...+...+....+..+.++..+.|+++.... +.+...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 35667888888888753 66677788888888888888888899888775 4466677777766544 2245566666
Q ss_pred HHHHH
Q 043758 155 VNIMR 159 (918)
Q Consensus 155 ~~~~~ 159 (918)
|.+..
T Consensus 125 y~~~l 129 (321)
T PF08424_consen 125 YEKCL 129 (321)
T ss_pred HHHHH
Confidence 65544
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.03 E-value=3.7 Score=40.30 Aligned_cols=111 Identities=10% Similarity=0.010 Sum_probs=76.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANC 844 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 844 (918)
-..-|.++|.+++|+..|..... ..| ++.++..-..+|.+..++..|..-.+.....+ .--...|+.-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 35568899999999999988777 455 77888888899999999999988888776321 111224555666666677
Q ss_pred ChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 043758 845 LSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEA 884 (918)
Q Consensus 845 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 884 (918)
+..+|.+-.+..++.. |.+. -|-..|.......++
T Consensus 180 ~~~EAKkD~E~vL~LE-P~~~----ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALE-PKNI----ELKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhC-cccH----HHHHHHHHhcchHhh
Confidence 7777777777777764 4432 344444444444444
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.67 E-value=44 Score=29.06 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=24.4
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.++.+++..+++.|.--.+-.+...++...+ +...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5555555555555544111122223333332 34555666666666665554
No 328
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.25 E-value=12 Score=29.73 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhc
Q 043758 81 ALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNA 126 (918)
Q Consensus 81 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 126 (918)
.++.++.+...+..|++....+.++++.+-+++..|+.+|+-+...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666666666666666655433
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.93 E-value=21 Score=38.45 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043758 504 SVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN 569 (918)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 569 (918)
+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 344455555555555555555555554443 333444444444444433333333333
No 330
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.72 E-value=25 Score=29.74 Aligned_cols=69 Identities=9% Similarity=0.025 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHccCChh---hHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 827 VPKKATYEHLLECFCANCLSI---PAFNMFKEMIVHDHVP-CLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 827 ~p~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.++..+--.+.+++.++.+.+ +.+.+++.+.+...|. .....+.|+.++.+.|+|+.++++++.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 444455555555556555433 3455666655422122 24445566666666666666666666666544
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.52 E-value=22 Score=32.73 Aligned_cols=73 Identities=7% Similarity=0.010 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhHHH
Q 043758 742 DDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD---GCVPDKTVYNTLLKGLCQAGRLSHVF 815 (918)
Q Consensus 742 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 815 (918)
++|.+.|-.+...+.--++.... .+..|....|.++|+.++....+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666665554333333333 333344456777777777776664 33566777777777777777777663
No 332
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.51 E-value=1.4e+02 Score=33.63 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=96.5
Q ss_pred cccCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 043758 481 CKWGNLDSALDILDQMEV-------RGPKPSVAIYDAIIGHLCKEK-----RILEAEDMFKRMLKAGIDPDEVFFTTMIN 548 (918)
Q Consensus 481 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 548 (918)
....+.+.|+..+..+.+ .| .+.....+..+|.+.. +.+.|..++....+.| .|+....-..+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345677777777777765 44 3345666777777643 6778999999999887 466554433333
Q ss_pred HHHc-CCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 043758 549 GYLQ-NRKPIEACQLFEKMKENSVQPGSYPYTALISGLV--KKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGE 625 (918)
Q Consensus 549 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 625 (918)
-... ..+...|.++|....+.|.. ...-+..++.... -..+...|..++++..+.| .|....-...+..+.. ++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 3333 35678999999999988843 2222222211111 2447788999999999887 3333333333334444 77
Q ss_pred HHHHHHHHHHHHHCCCC
Q 043758 626 FEFASRLENLMVTNQIE 642 (918)
Q Consensus 626 ~~~a~~~~~~~~~~~~~ 642 (918)
++.+.-.+..+.+.|.+
T Consensus 413 ~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYE 429 (552)
T ss_pred ccHHHHHHHHHHHhhhh
Confidence 77777777777665543
No 333
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.09 E-value=1.7e+02 Score=34.42 Aligned_cols=41 Identities=7% Similarity=0.099 Sum_probs=29.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcc
Q 043758 620 FLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRIT 660 (918)
Q Consensus 620 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 660 (918)
|......+-++..++.+....-.++..-.+.++..|+....
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~ 641 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVL 641 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHh
Confidence 55666777788888888776666677777777777776533
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.91 E-value=72 Score=30.13 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=8.5
Q ss_pred HcCChhHHHHHHHHHHh
Q 043758 807 QAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 807 ~~g~~~~A~~~~~~~~~ 823 (918)
..+++.+|++++++...
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.52 E-value=1.2e+02 Score=32.43 Aligned_cols=173 Identities=12% Similarity=0.132 Sum_probs=107.9
Q ss_pred hhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC
Q 043758 695 TAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAG 774 (918)
Q Consensus 695 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 774 (918)
+....+..+-+..-++.++.+|.+.| .+-..|..++.+|... ..++-..+|+++.+..+ |.+....-+..+...+
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yEki 145 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHHHh
Confidence 33444444556667777777777655 3566788888888887 66777888888887543 3333333333344448
Q ss_pred CHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChh
Q 043758 775 EIDQAIGLFNQMNADGCVPD------KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-GFVPKKATYEHLLECFCANCLSI 847 (918)
Q Consensus 775 ~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~ 847 (918)
+.+++...|.++... +-|. .+.|.-+...- ..+.+....+...+.+. |..--...+..+..-|...-++.
T Consensus 146 k~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ 222 (711)
T COG1747 146 KKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT 222 (711)
T ss_pred chhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence 888888888888765 3331 13454444321 34566666666666543 33344455666666777777888
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 848 PAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 848 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
+|++++..+++++ ..|..+...++.-+.
T Consensus 223 eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 223 EAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 8888888888776 555555555554443
No 336
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.76 E-value=91 Score=30.75 Aligned_cols=60 Identities=8% Similarity=0.079 Sum_probs=27.5
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043758 201 VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT-GCEPDSYTCNTLIHGFFKMGLFDKGWVL 260 (918)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 260 (918)
++..+....+..++..+++.+-.+.++.-... +..-|...|..+|+.....|+..-...+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 34444444455555555555555544443322 2233444455555555555554433333
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.49 E-value=25 Score=32.36 Aligned_cols=73 Identities=18% Similarity=0.041 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043758 557 IEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD---GFVPNVVLYTALINHFLRAGEFEFAS 630 (918)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 630 (918)
+.|.+.|-.+...+.--++.....|. .|....+.++++.++-...+. +-.+|+..+.+|++.+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56677777776665433333333333 333456777777777776665 33567788888888888888877763
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.31 E-value=7.5 Score=24.77 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=12.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMN 787 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~ 787 (918)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444555555555555555555443
No 339
>PRK09687 putative lyase; Provisional
Probab=74.23 E-value=99 Score=30.92 Aligned_cols=38 Identities=16% Similarity=-0.064 Sum_probs=20.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 043758 418 IYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCF 458 (918)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 458 (918)
..+.++...|.. +|+..+..+.+. .||...-...+.++
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 345555556664 566666666653 34555555555444
No 340
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.08 E-value=95 Score=30.63 Aligned_cols=137 Identities=9% Similarity=0.052 Sum_probs=82.9
Q ss_pred hcHHHHHHHHHHHhh-cCCCCcchhHHHHHHHHHc-CC-ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHH
Q 043758 111 EKFLEAFDYFIKICN-AGVDLNCWSYNVLIDGLCY-KG-FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEA 187 (918)
Q Consensus 111 g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 187 (918)
.-+-+|+.+|+.... ..+-.|..+...++..... .+ ....--++.+-+....+..++..+...++..+++.+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345666666663221 1233455555556655544 22 22223345555554344567777777888888888888888
Q ss_pred HHHHHHHHhC-CCCCChhhHHHHHHHHhcCCChHHHHHHHHH-----HHhcCCCCChhhHHHHHHH
Q 043758 188 ESFAREMESQ-GFYVDKLMYTSLINGYCSNRNMKMAMRLFFR-----MLKTGCEPDSYTCNTLIHG 247 (918)
Q Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~~~~p~~~~~~~ll~~ 247 (918)
.++++..... ++..|...|...|......|+..-...+.++ +++.++..+...-..+-+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 8888877665 5555778888888888888887777776654 2344555554444444333
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.68 E-value=1.9e+02 Score=33.97 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=63.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcC--CCCC-hhhHHHHHHHHHhcCCh--hHHHHHHHHHHhCCCCccHhhHH-
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTG--CEPD-SYTCNTLIHGFFKMGLF--DKGWVLYSQMSDWGFQPNMVTDL- 277 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~-~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~- 277 (918)
..|..|+..|...|+.++|+++|.+..... ..+. ...+-.++..+.+.+.. +-.+++-+...+.........+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 358899999999999999999999887631 0111 11233345544444443 44444444444332110001111
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 278 -----------IMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 278 -----------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
..+-.|......+-+...++.+....-.++....+.++..|++
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122355556666666777766654434455556666665554
No 342
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.99 E-value=97 Score=29.81 Aligned_cols=194 Identities=13% Similarity=0.142 Sum_probs=103.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCc---hhHHHHHHHHHhcCChhHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHHcCC
Q 043758 554 RKPIEACQLFEKMKENSVQPGS---YPYTALISGLVKKGMVDLGCMYLDRMLAD---GF--VPNVVLYTALINHFLRAGE 625 (918)
Q Consensus 554 ~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~ 625 (918)
.++++|+.-|++..+..-.... .....++....+.|++++....+.++... .+ .-+....|++++.-..+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3555666666655543211111 22334455566666666666666665432 00 1234455666665554444
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCC
Q 043758 626 FEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGK 705 (918)
Q Consensus 626 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 705 (918)
.+--..+|+.-++ ++ +..+.......+-..+...++..|.
T Consensus 121 m~LLQ~FYeTTL~---------------AL-------------------------kdAKNeRLWFKTNtKLgkl~fd~~e 160 (440)
T KOG1464|consen 121 MDLLQEFYETTLD---------------AL-------------------------KDAKNERLWFKTNTKLGKLYFDRGE 160 (440)
T ss_pred hHHHHHHHHHHHH---------------HH-------------------------HhhhcceeeeeccchHhhhheeHHH
Confidence 4444444433221 11 0112223333444455566777788
Q ss_pred hhHHHHHHHHHHhcCCCC----C-------hhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCcHHhHHHHHHHH---
Q 043758 706 KGTVQKIVLKVKDIEFMP----N-------LYLYNDIFLLLCGVGRMDDAYDHFQMMKRE-GLRPNQVTFCILINGH--- 770 (918)
Q Consensus 706 ~~~a~~~~~~~~~~~~~~----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~--- 770 (918)
+....+++..++..-... | ...|..-|..|...++-..-..+|++.+.. .-.|.+.. ..+|+-|
T Consensus 161 ~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGK 239 (440)
T KOG1464|consen 161 YTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGK 239 (440)
T ss_pred HHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCc
Confidence 888888888876432111 1 246777778888888888888888876542 12344433 3455544
Q ss_pred --HhcCCHHHHHH-HHHHHHh
Q 043758 771 --IAAGEIDQAIG-LFNQMNA 788 (918)
Q Consensus 771 --~~~g~~~~A~~-~~~~~~~ 788 (918)
.+.|++++|-. .|+....
T Consensus 240 MHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 240 MHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred cccccchHHHHHhHHHHHHhc
Confidence 47789998874 4444443
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.59 E-value=41 Score=32.63 Aligned_cols=85 Identities=13% Similarity=0.062 Sum_probs=57.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHc--CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---
Q 043758 732 FLLLCGVGRMDDAYDHFQMMKRE--GLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC--- 806 (918)
Q Consensus 732 ~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--- 806 (918)
|++++..++|.+++...-+.-+. .++|.. ...-|-.|.+.|++..+.++-.......-+-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 58888999999987765444321 244543 34445568899999999998888887622223344666665554
Q ss_pred --HcCChhHHHHHH
Q 043758 807 --QAGRLSHVFSVF 818 (918)
Q Consensus 807 --~~g~~~~A~~~~ 818 (918)
-.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 569999998877
No 344
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.94 E-value=1.5e+02 Score=31.53 Aligned_cols=109 Identities=17% Similarity=0.078 Sum_probs=70.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHH---CCC--CC---cHHHHHHHHHHHHcCCChHHHHHHHHHHHh-------CCCCCCc--
Q 043758 513 GHLCKEKRILEAEDMFKRMLK---AGI--DP---DEVFFTTMINGYLQNRKPIEACQLFEKMKE-------NSVQPGS-- 575 (918)
Q Consensus 513 ~~~~~~~~~~~a~~~~~~~~~---~~~--~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~-- 575 (918)
..+.-.|++..|.+++...-- .|. .| +-..||.+.-.+.+.+.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 344556889998888765432 121 11 122346666666677777777777766653 4555432
Q ss_pred ---------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 576 ---------YPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRA 623 (918)
Q Consensus 576 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (918)
.+||. .-.|...|++-.|.+.|...+.. +..++..|-.|..+|...
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 22332 33567889999999999888764 567889999999998754
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.23 E-value=5.9 Score=23.86 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=15.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKR 753 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 753 (918)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555566666666666666665554
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.18 E-value=17 Score=33.53 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK-ATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
+.+.-+..+.+.+.+.+|+...++-++ -+|+. .+-..++..||-.|++++|..-++..-...
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 345566778889999999999888776 35644 456667778999999999998888776653
No 347
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.81 E-value=1.5e+02 Score=31.04 Aligned_cols=141 Identities=12% Similarity=0.149 Sum_probs=71.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHH--HHHHHHh-ccCchHHHHHHHHHHHhC---C-C-CCChhhHHH
Q 043758 137 VLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYK--SLFYALC-KNIRTVEAESFAREMESQ---G-F-YVDKLMYTS 208 (918)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~ll~~~~-~~g~~~~a~~~~~~~~~~---~-~-~~~~~~~~~ 208 (918)
..+..+.+.|-+..|.++.+.+.. +.|+...+. .+|..|+ +.++++--..+.+..... . . ......|+.
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 345667778888888888888876 444433333 3344443 667777777777665541 1 0 012345555
Q ss_pred HHHHHhcCCC--------------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH--HhCCCCcc
Q 043758 209 LINGYCSNRN--------------MKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQM--SDWGFQPN 272 (918)
Q Consensus 209 li~~~~~~g~--------------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~~~~ 272 (918)
.+..+...+. .+.|...+.+.... -| .....|+..+.- ..+....-.... ...+..+.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~--fP--~vl~~Ll~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 258 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR--FP--WVLVPLLDKLGI--SPDSSVSNHPHFSPSSWSSEPP 258 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHH--hH--HHHHHHHHHhcc--ccchhhhcCCCCcccccccCCc
Confidence 5444433222 27777777776643 23 334444444411 222222221111 11122334
Q ss_pred HhhHHHHHHHHHhc
Q 043758 273 MVTDLIMISNYCRE 286 (918)
Q Consensus 273 ~~~~~~l~~~~~~~ 286 (918)
......++..|+..
T Consensus 259 ~~~~~ll~~lYv~R 272 (360)
T PF04910_consen 259 SDSLKLLTELYVER 272 (360)
T ss_pred hhHHHHHHHHHHHH
Confidence 45566777777643
No 348
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.80 E-value=1.1e+02 Score=29.24 Aligned_cols=118 Identities=13% Similarity=0.010 Sum_probs=77.4
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCcHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCh
Q 043758 734 LLCGVGRMDDAYDHFQMMKREGLRPNQVTF-CILINGHIAAGEIDQAIGLFNQMNADGCVPDK-TVYNTLLKGLCQAGRL 811 (918)
Q Consensus 734 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 811 (918)
.|....+++.|+..|.+.+. +.|+..+| ..=+.++.+..+++.+..--...++ +.|+. .....+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 45566778899998877776 67877554 5566778888899988887777776 45654 3344555666777889
Q ss_pred hHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 043758 812 SHVFSVFYSMH----KRGFVPKKATYEHLLECFCANCLSIPAFNMFKE 855 (918)
Q Consensus 812 ~~A~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 855 (918)
++|+..+.+.. +..+.|-...+..|..+-.+.=...+..++.+.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 99999988874 334555556666666642222233334444443
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.73 E-value=9.8 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=13.1
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhc
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNA 126 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~ 126 (918)
.+..++.+.|++++|...|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444455555555555555555543
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.70 E-value=30 Score=27.46 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=23.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 769 GHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 769 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.+...|++++|..+.+.+ ..||...|..+ +-.+.|..+++..-+.+|..
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 344555666555554443 23555554443 23345555555554545543
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.90 E-value=40 Score=31.32 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
.+..++.+.+.+...+++...+.-++.. +.|...-..++..++-.|++++|..-++...+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3444556666677777777776666554 44555666666777777777777766666544
No 352
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.83 E-value=4 Score=35.87 Aligned_cols=54 Identities=7% Similarity=0.110 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFY 819 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 819 (918)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 445555555666666666666554433445555666666666655555555554
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.72 E-value=16 Score=27.52 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHH
Q 043758 772 AAGEIDQAIGLFNQMNADGCVPD--KTVYNTLLKGLCQAGRLSHVFSV 817 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 817 (918)
...+-++|+..|...++.-..|. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555444322211 13334444455555555544443
No 354
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=67.60 E-value=1.8e+02 Score=31.17 Aligned_cols=93 Identities=11% Similarity=0.136 Sum_probs=51.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHH--HhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGH--IAAGEIDQAIGLFNQMNAD-GCVPDKTVYNTLLK 803 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~ 803 (918)
.-+..++.+-+.|-.++|...+..+... .+|+...|..+|.-- ..+-+..-+..+|+.|... | .|+..|...+.
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~ 538 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMK 538 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 3345556666666777777777777664 234455555554321 1122355666666666665 5 35555555555
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 043758 804 GLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~ 822 (918)
.-...|..+.+-.++.+..
T Consensus 539 ~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hhccCCCcccccHHHHHHH
Confidence 5455666666555555544
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.39 E-value=9.6 Score=21.90 Aligned_cols=29 Identities=14% Similarity=-0.043 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
..+..++..+...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35677788888888888888888776653
No 356
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.26 E-value=62 Score=30.72 Aligned_cols=61 Identities=10% Similarity=0.010 Sum_probs=48.1
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 835 HLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 835 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
..-.++...|++-++++.-.+.+... |.|..+|+..+.+.+..=+..+|..-+...++...
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 34456667778888888888888776 77888888888888888888888888888887763
No 357
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.44 E-value=1.4e+02 Score=29.48 Aligned_cols=157 Identities=13% Similarity=0.090 Sum_probs=72.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH----HHHHHHcCCCCcHHhHHHHHHHHHhcCCHH-
Q 043758 703 NGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDH----FQMMKREGLRPNQVTFCILINGHIAAGEID- 777 (918)
Q Consensus 703 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~li~~~~~~g~~~- 777 (918)
.+++++|.+++..-. ..+.+.|+...|.++ ++...+.+.++|......++..+...+.-+
T Consensus 3 ~kky~eAidLL~~Ga---------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGA---------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp TT-HHHHHHHHHHHH---------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred cccHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 466777777765332 344455555444333 333344455566555455554444332111
Q ss_pred HHHHHHHHHHh---CCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 043758 778 QAIGLFNQMNA---DGC--VPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNM 852 (918)
Q Consensus 778 ~A~~~~~~~~~---~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 852 (918)
+-..+.+.+++ .+- .-|+..+..+...|.+.|++.+|...|-.- -.|+...+..++.-....|...++
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~--- 140 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEA--- 140 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H---
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcch---
Confidence 11222222222 222 236677888888899999888887665221 111222221222222222322222
Q ss_pred HHHHHhCCCCCCcccHH-HHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 853 FKEMIVHDHVPCLSNCN-WLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 853 ~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
..|. ..+--|...|+...|...++...+.
T Consensus 141 -------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -------------DLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2222 3344567778888888888777655
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.42 E-value=79 Score=30.84 Aligned_cols=89 Identities=13% Similarity=0.027 Sum_probs=47.5
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhc-
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCK- 180 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~- 180 (918)
.-|++++..+++.+++.+.-+.-...-.........-|-.|++.++...+.++-..-.. ..-.-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHH
Confidence 44566677777777766654433221122233455555566677777776666666555 2222233345555554443
Q ss_pred ----cCchHHHHHHH
Q 043758 181 ----NIRTVEAESFA 191 (918)
Q Consensus 181 ----~g~~~~a~~~~ 191 (918)
.|.+++|+.+.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 36666666554
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.02 E-value=16 Score=27.50 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=33.9
Q ss_pred hhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhh
Q 043758 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLL 67 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~ 67 (918)
|..+.+..+|.....+++.+.++..+...+ +..+++++...|++.+++.+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~---------------lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRV---------------LGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777666665444333 45678888888888888876
No 360
>PRK09687 putative lyase; Provisional
Probab=65.80 E-value=1.5e+02 Score=29.65 Aligned_cols=80 Identities=5% Similarity=-0.092 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCCh----HHHHHHHHHHHhCCCCCCchhH
Q 043758 503 PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKP----IEACQLFEKMKENSVQPGSYPY 578 (918)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~ 578 (918)
+|..+....+..+...|.. .+...+..+.. .+|...-...+.+++..|+. +++...+..+... .|+..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 3555555566666665543 33333333433 34555555556666666653 3566666655433 3455555
Q ss_pred HHHHHHHHhc
Q 043758 579 TALISGLVKK 588 (918)
Q Consensus 579 ~~l~~~~~~~ 588 (918)
...+.++...
T Consensus 109 ~~A~~aLG~~ 118 (280)
T PRK09687 109 ASAINATGHR 118 (280)
T ss_pred HHHHHHHhcc
Confidence 5555555544
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.71 E-value=19 Score=23.66 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=11.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 043758 581 LISGLVKKGMVDLGCMYLDRMLA 603 (918)
Q Consensus 581 l~~~~~~~g~~~~a~~~~~~~~~ 603 (918)
+..+|...|+.+.|..+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 362
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.79 E-value=1.3e+02 Score=28.56 Aligned_cols=22 Identities=5% Similarity=-0.022 Sum_probs=13.2
Q ss_pred hccCchHHHHHHHHHHHhCCCC
Q 043758 179 CKNIRTVEAESFAREMESQGFY 200 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~ 200 (918)
+..+++.+|..+|+++......
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666677776666655443
No 363
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=64.53 E-value=1.6e+02 Score=29.63 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=7.7
Q ss_pred cCCHHHHHHHHHHHHh
Q 043758 773 AGEIDQAIGLFNQMNA 788 (918)
Q Consensus 773 ~g~~~~A~~~~~~~~~ 788 (918)
.++.++|++.++++.+
T Consensus 88 ~~D~~~al~~Le~i~~ 103 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIE 103 (380)
T ss_pred hccHHHHHHHHHHHHH
Confidence 3345555555554444
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.76 E-value=43 Score=36.04 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=49.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHH
Q 043758 248 FFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEV 327 (918)
Q Consensus 248 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 327 (918)
+-..|+...|...+.........-..+....|.....+.|...+|-.++....... ....-++..+.+++....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34556666666666555433211112233345555556666666666666655443 23344555666666666777777
Q ss_pred HHHHHHHHhC
Q 043758 328 DELYKKMLAN 337 (918)
Q Consensus 328 ~~~~~~~~~~ 337 (918)
++.|++..+.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 7777666553
No 365
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.76 E-value=1.8e+02 Score=29.86 Aligned_cols=136 Identities=12% Similarity=0.050 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 043758 504 SVAIYDAIIGHLCKEKR------------ILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSV 571 (918)
Q Consensus 504 ~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 571 (918)
|+.+|-.++..--..-. .+.-+.+++++.+.+ +.+...+..++..+.+..+.++..+.++++....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Confidence 67777777755443321 455677888888774 4566777888888888888899999999998873
Q ss_pred CCCchhHHHHHHHHHh---cCChhHHHHHHHHHHhC------CC----CC----C---HHHHHHHHHHHHHcCCHHHHHH
Q 043758 572 QPGSYPYTALISGLVK---KGMVDLGCMYLDRMLAD------GF----VP----N---VVLYTALINHFLRAGEFEFASR 631 (918)
Q Consensus 572 ~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~------~~----~~----~---~~~~~~l~~~~~~~g~~~~a~~ 631 (918)
+-+...|...++.... .-.++....+|.+.... +. .+ . ..++..+...+..+|..+.|..
T Consensus 96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 2355667766665543 23466666666655443 11 01 1 1233334444568999999999
Q ss_pred HHHHHHHCCC
Q 043758 632 LENLMVTNQI 641 (918)
Q Consensus 632 ~~~~~~~~~~ 641 (918)
+++.+++.++
T Consensus 176 ~~Qa~lE~n~ 185 (321)
T PF08424_consen 176 LWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHc
Confidence 9999988764
No 366
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.33 E-value=2.9e+02 Score=32.04 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhhcc-cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 454 LIKCFYQVGFLEGANAIVELMQDT-EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRML 532 (918)
Q Consensus 454 li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 532 (918)
+|.-+.+.|-.+-|....+.-... ......|+++.|++.-.++- +..+|..|...-...|+.+-|+-.|++..
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 333344445544444443332222 33446688888877665542 67889999999999999999999888876
Q ss_pred HCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 043758 533 KAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKM 566 (918)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 566 (918)
. |+.+--.|.-.|+.++-.++....
T Consensus 700 n---------fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 700 N---------FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred h---------hhheeEEEEEeCCHHHHHHHHHHH
Confidence 4 222333444455555544444333
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.93 E-value=54 Score=26.11 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=30.9
Q ss_pred HHHHHHHcCCchhHHhhhh-hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 51 LMKKLIKFGQSQSALLLYQ-NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 51 l~~~l~~~~~~~~a~~~~~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
+...|...++.+++..+.+ ..+..+|+|++|..+.+.. +.||...|-++.. -+.|-.+.+...+-++-..|
T Consensus 27 IAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 27 IADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3334433443344333332 2235555555555554433 2355555544443 23344444444444444443
No 368
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.76 E-value=2.8e+02 Score=31.67 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=17.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 043758 417 TIYISALCKGGKYEKAYVCLFQLV 440 (918)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~~~ 440 (918)
..|+..|...+++++|+.++-.+.
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 347777888888888887776654
No 369
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=62.72 E-value=4 Score=35.82 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=49.7
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043758 174 LFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 174 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 253 (918)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++. .+......++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555566667777777777777655444667777777777777666666666551 111333445566666666
Q ss_pred hhHHHHHHHHH
Q 043758 254 FDKGWVLYSQM 264 (918)
Q Consensus 254 ~~~a~~~~~~~ 264 (918)
++.+.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66665555543
No 370
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.85 E-value=2.3e+02 Score=30.03 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=46.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCC-hhhH------HHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 808 AGRLSHVFSVFYSMHKRGFVPKKA----TYEHLLECFCANCL-SIPA------FNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~-~~~A------~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
.|++++|+.++-.+.. +.||.. .|..++..+-.... .... +...++++-.+ ..+.-+....+---.
T Consensus 711 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 787 (831)
T PRK15180 711 EGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFD-SENAYALKYAALNAM 787 (831)
T ss_pred cccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeec-cchHHHHHHHHhhHh
Confidence 3788999998877764 788876 34555554333221 1111 22222222222 222222222222234
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 043758 877 QEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 877 ~~g~~~~A~~~~~~~~~~~ 895 (918)
...+|.+|++.++++.+-+
T Consensus 788 ~~~~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKVN 806 (831)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5578999999999997754
No 371
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=60.79 E-value=3e+02 Score=31.46 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=94.4
Q ss_pred HHHHHHHHHhcCCCCCCc--ccHHHHHHHHh-ccCchHHHHHHHHHHHhCCCCCChh-----hHHHHHHHHhcCCChHHH
Q 043758 151 VLEVVNIMRKKKGLVPAL--HPYKSLFYALC-KNIRTVEAESFAREMESQGFYVDKL-----MYTSLINGYCSNRNMKMA 222 (918)
Q Consensus 151 A~~~~~~~~~~~~~~~~~--~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A 222 (918)
|++.++.+.+...++|.. .++..+...+. ...+++.|+..+++.....-.++.. ....++..|.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 344555555323344432 33444455444 5567777777777654432221211 2234556666655544 7
Q ss_pred HHHHHHHHhcCCC----CChhhHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCccHhhHHHHHHHHH--hcCCHHHH
Q 043758 223 MRLFFRMLKTGCE----PDSYTCNTL-IHGFFKMGLFDKGWVLYSQMSDWG---FQPNMVTDLIMISNYC--REGEVDAA 292 (918)
Q Consensus 223 ~~~~~~m~~~~~~----p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~A 292 (918)
...+++..+.--. +-...|..+ +..+...+++..|.+.++.+.... ..|-..++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 7777776543111 111222222 222223368888888887775532 2344444444444433 44556666
Q ss_pred HHHHHHHhhCC---------CCCCcchHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 043758 293 LMLLNSKVSSN---------LAPSVHCYTVLIDA--LYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 293 ~~~~~~~~~~~---------~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~ 336 (918)
.+.++++.... -.|...+|..+++. +...|++..+.+.++++..
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666553211 12345566666554 4556777777777766643
No 372
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.67 E-value=1.6e+02 Score=28.15 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=79.9
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHh-HHHHHHHHHhcCC
Q 043758 698 SAVFSNGKKGTVQKIVLKVKDIEFMPNL-YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVT-FCILINGHIAAGE 775 (918)
Q Consensus 698 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~ 775 (918)
.-|+...++..|+..+.+. .-+.|++ .-|..-+.++.+..+++.+..--.+.++ +.||.+- ...+..+......
T Consensus 18 nk~f~~k~y~~ai~~y~ra--I~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRA--ICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHH--HhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 4566677788888865544 4556766 5566777788888999988887777776 6777763 3445556678889
Q ss_pred HHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043758 776 IDQAIGLFNQMNAD----GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSM 821 (918)
Q Consensus 776 ~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 821 (918)
+++|+..+.+..+. .++|....+..|..+--..=...+..++.++.
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999988887443 45555566666655533333344455555544
No 373
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.93 E-value=67 Score=33.84 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=27.0
Q ss_pred HccCChhHHHHHHHHHHHcCCCCcHH--hHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 043758 736 CGVGRMDDAYDHFQMMKREGLRPNQV--TFCILINGHI--AAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 736 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~ 788 (918)
.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666654 444333 3333444443 23455566666665544
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=58.57 E-value=3.3e+02 Score=31.17 Aligned_cols=186 Identities=10% Similarity=0.004 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHh-CCCCCC--hhhHHHHHHHhh-chhcHHHHHHHHHHHhhcCCCCcch-----hHHHHHHHHHcCCChh
Q 043758 79 EDALRHFDRLIS-KNIVPI--KLACVSILRGLF-AEEKFLEAFDYFIKICNAGVDLNCW-----SYNVLIDGLCYKGFLD 149 (918)
Q Consensus 79 ~~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~ 149 (918)
..|+..++.+.+ ..+.|. ..++-.++..|. ...++++|...+++.....-+++.. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 456777777774 333333 335567777776 5678999999998775443222221 1223445555555554
Q ss_pred HHHHHHHHHHhcCCCCCC-c--ccHHHH-HHHHhccCchHHHHHHHHHHHhCC---CCCChhhHHHHHHHHh--cCCChH
Q 043758 150 EVLEVVNIMRKKKGLVPA-L--HPYKSL-FYALCKNIRTVEAESFAREMESQG---FYVDKLMYTSLINGYC--SNRNMK 220 (918)
Q Consensus 150 ~A~~~~~~~~~~~~~~~~-~--~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~ 220 (918)
|...++..++...-.+. . ..|.-+ +..+...+++..|.+.++.+.... ..|-..++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887762221111 1 122222 222223378888888888776542 2223334444444333 456667
Q ss_pred HHHHHHHHHHhcC---------CCCChhhHHHHHHHH--HhcCChhHHHHHHHHHH
Q 043758 221 MAMRLFFRMLKTG---------CEPDSYTCNTLIHGF--FKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 221 ~A~~~~~~m~~~~---------~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~ 265 (918)
++.+.++++.... ..|...+|..++..+ ...|++..+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777663321 123345666666654 35677667776666553
No 375
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.55 E-value=8.5 Score=38.18 Aligned_cols=122 Identities=14% Similarity=0.032 Sum_probs=68.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChhhH
Q 043758 771 IAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCANCLSIPA 849 (918)
Q Consensus 771 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A 849 (918)
...|.++.|++.|...+..+ +|....|..-..++.+.++...|++-+....+ +.||.. .|-.--.+..-.|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 34567777777777766641 22334555555666777777777776666654 445443 222222233556677777
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 850 FNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
...+......++.+. +-..|-.+.-..+..++-...+++.++.+..
T Consensus 202 a~dl~~a~kld~dE~--~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~ 247 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA--NSATLKEVFPNAGKIEEHRRKYERAREEREI 247 (377)
T ss_pred HHHHHHHHhccccHH--HHHHHHHhccchhhhhhchhHHHHHHHHhcc
Confidence 777777666654333 2333444555555555555555555554433
No 376
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.22 E-value=1.8e+02 Score=28.16 Aligned_cols=185 Identities=11% Similarity=0.020 Sum_probs=118.1
Q ss_pred cCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHH---HHHHHhhchhcHHHHHHHHHHHhhcCCCCcchh
Q 043758 58 FGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACV---SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWS 134 (918)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 134 (918)
..++.++..+|+.++.+..+.+.|+++...++..++. +-..|+ .+++.+ ..+..+=++.++++.+.. +-|-.+
T Consensus 39 te~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l--~~dL~~El~~l~eI~e~n-pKNYQv 114 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHL--MSDLNKELEYLDEIIEDN-PKNYQV 114 (318)
T ss_pred chhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC-ccchhH
Confidence 3467888999999999999999999999999988744 333333 233322 235666788888888775 556666
Q ss_pred HHHHHHHHHcCCChh-HHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043758 135 YNVLIDGLCYKGFLD-EVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGY 213 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 213 (918)
|..--......|+.. .=+++...|.. +-.-+-++|...--++...+.++.=.....++.+..+. +..+||--.-..
T Consensus 115 WHHRr~ive~l~d~s~rELef~~~~l~--~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi 191 (318)
T KOG0530|consen 115 WHHRRVIVELLGDPSFRELEFTKLMLD--DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVI 191 (318)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHh--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEE
Confidence 665555555566776 67788888875 23344556665666666677888888888999888665 666676532111
Q ss_pred hc-CCC-----hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 043758 214 CS-NRN-----MKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFK 250 (918)
Q Consensus 214 ~~-~g~-----~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 250 (918)
.. .|- .+.-+.+...+++. ++.+...|+.|-..+..
T Consensus 192 ~~~~~~~~~~~le~El~yt~~~I~~-vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 192 TNTKGVISKAELERELNYTKDKILL-VPNNESAWNYLKGLLEL 233 (318)
T ss_pred EeccCCccHHHHHHHHHHHHHHHHh-CCCCccHHHHHHHHHHh
Confidence 11 111 12222333333333 34456678877665553
No 377
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.87 E-value=2.7e+02 Score=29.97 Aligned_cols=181 Identities=13% Similarity=0.021 Sum_probs=121.3
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
+.|....-.++..++..-.+.-+..+..+|.. +..+-..+..++.+|.+. ..+.-..+++++.+..+. |++.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~---~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE---YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 44556677788888887788888889999987 446777888899999887 667788888888887553 4444444
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCC--CC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCccHhhHHHHHHH
Q 043758 209 LINGYCSNRNMKMAMRLFFRMLKTGCE--PD---SYTCNTLIHGFFKMGLFDKGWVLYSQMSDW-GFQPNMVTDLIMISN 282 (918)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~--p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 282 (918)
|...| ..++.+.+...|.++...=++ .+ ...|..+... -..+.+...++...+... |...-...+.-+-.-
T Consensus 138 La~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 54444 448888888888887754221 01 1234444331 134566666666666543 333334455555567
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 043758 283 YCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDAL 318 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 318 (918)
|....++++|.+++..+.+.+ ..|..+...++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 888889999999999988876 46666666665544
No 378
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.58 E-value=3.3e+02 Score=30.89 Aligned_cols=618 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhcCCCCcchhHHHHH-HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc---------
Q 043758 112 KFLEAFDYFIKICNAGVDLNCWSYNVLI-DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKN--------- 181 (918)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------- 181 (918)
...+.+...+.+.+..-.|+..+-..++ ..|...|++++|++.--.........++...+.+++.-|...
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~ 117 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETY 117 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHh
Q ss_pred CchH-------HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-
Q 043758 182 IRTV-------EAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL- 253 (918)
Q Consensus 182 g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~- 253 (918)
+..+ +-+.++++|..+-. +..-|..+|.......+++.-.+. +.+. ..+....+.++..+....+
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~kcl--~d~e~~~aiGia~E~~rld~ie~A---il~~--d~~~~~~~yll~l~~s~v~~ 190 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQKCL--DDNEYKQAIGIAFETRRLDIIEEA---ILKS--DSVIGNLTYLLELLISLVNN 190 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhh--hhhHHHHHHhHHhhhhhHHHHHHH---hccc--cccchHHHHHHHHHHHHHhh
Q ss_pred hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
.+--.++++.+.+.-.+....-|..+.++|.-..+.+.|.++++.+.+ ..+.-.-..+.--+..+-..+--..+.+.
T Consensus 191 ~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~---e~~~llayQIAFDL~esasQefL~~v~~~ 267 (929)
T KOG2062|consen 191 REFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK---EDDLLLAYQIAFDLYESASQEFLDSVLDR 267 (929)
T ss_pred HHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh---cchhhhHHHHHHHHhhccCHHHHHHHHHH
Q ss_pred HHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCch
Q 043758 334 MLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLAN 413 (918)
Q Consensus 334 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 413 (918)
+... -..|......++..+.. +...+++.+..-+....+.
T Consensus 268 l~~d-~~~de~p~~kii~ILSG---------------------------------------e~tik~~l~FL~~~N~tD~ 307 (929)
T KOG2062|consen 268 LPAD-DARDEKPMEKIISILSG---------------------------------------EETIKLYLQFLLRHNNTDL 307 (929)
T ss_pred cccc-cccccChHHHHHHHhcC---------------------------------------chHHHHHHHHHHHcCCchH
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
...+..-... +..-..-|.-+-+.....| ..+...+..-+.-+++...+.+-...-. .+....|+..+|.+++
T Consensus 308 ~iL~~iK~s~-r~sv~H~A~~iAN~fMh~G-TT~D~FlR~NL~WlskAtNWaKFtAtAs-----LGvIH~G~~~~~~~ll 380 (929)
T KOG2062|consen 308 LILEEIKESV-RNSVCHTATLIANAFMHAG-TTSDTFLRNNLDWLSKATNWAKFTATAS-----LGVIHRGHENQAMKLL 380 (929)
T ss_pred HHHHHHHHHH-HHhhhhHHHHHHHHHHhcC-CcchHHHHhchhHHhhcchHhhhhhhhh-----cceeeccccchHHHHh
Q ss_pred HHHHHcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 043758 494 DQMEVRGPKPSVA-----IYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE 568 (918)
Q Consensus 494 ~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 568 (918)
.-.+...-.+... .+-++.-.++..|+- ..+++....+. ..+...-....-++.-.|.-..-.++|+.+++
T Consensus 381 ~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~--~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKe 456 (929)
T KOG2062|consen 381 APYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKT--AENEVVRHGACLGLGLAGMGSANEEIYEKLKE 456 (929)
T ss_pred hhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHh--ccchhhhhhhhhhccchhcccccHHHHHHHHH
Q ss_pred CCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCccH
Q 043758 569 NSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD-GFVPNVVLYTALINH--FLRAGEFEFASRLENLMVTNQIEFDL 645 (918)
Q Consensus 569 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~p~~ 645 (918)
.-..-+..+-.+-.-+..-..--..-.+.+++|..- +-.-...+...+.-+ +..-|+.++|..+.++|.... .|-.
T Consensus 457 vLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk-dpil 535 (929)
T KOG2062|consen 457 VLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDK-DPIL 535 (929)
T ss_pred HHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCC-chhh
Q ss_pred HHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCCh
Q 043758 646 IAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNL 725 (918)
Q Consensus 646 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 725 (918)
..-+.+-.+ .+++-.|+.....+++.... .....|+
T Consensus 536 R~~Gm~t~a-------------------------------------------lAy~GTgnnkair~lLh~aV-sD~nDDV 571 (929)
T KOG2062|consen 536 RYGGMYTLA-------------------------------------------LAYVGTGNNKAIRRLLHVAV-SDVNDDV 571 (929)
T ss_pred hhhhHHHHH-------------------------------------------HHHhccCchhhHHHhhcccc-cccchHH
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV--TFCILINGHIAAGEIDQAIGLFNQMNAD--GCVPDKTVYNTL 801 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l 801 (918)
.-.-.+.-++.-..+++....+.+-+.++ ..|-.. +-.+|.-+|+-.|+ .+|+.+++-|... ++. .....-++
T Consensus 572 rRaAVialGFVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D~~~fV-RQgAlIa~ 648 (929)
T KOG2062|consen 572 RRAAVIALGFVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSDPVDFV-RQGALIAL 648 (929)
T ss_pred HHHHHHHheeeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcChHHHH-HHHHHHHH
Q ss_pred HHHHHHcC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 802 LKGLCQAG-----RLSHVFSVFYSMHKRGFVPKKATYEHLLE 838 (918)
Q Consensus 802 ~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (918)
.-..+++. ++..-.+.|.+.....-...-.-+.+++.
T Consensus 649 amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 649 AMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHH
No 379
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.63 E-value=1.3e+02 Score=25.81 Aligned_cols=21 Identities=0% Similarity=-0.138 Sum_probs=10.7
Q ss_pred HHHccCChhhHHHHHHHHHhC
Q 043758 839 CFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 839 ~~~~~~~~~~A~~~~~~~~~~ 859 (918)
++.+.++++.+.++++.+++.
T Consensus 80 g~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHhh
Confidence 445555555555555555443
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.51 E-value=46 Score=35.86 Aligned_cols=56 Identities=20% Similarity=0.072 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
|.....+.|..-+|-.++.+.+... ...+-++..+.++|.-..+++.|++.|++..
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~ 703 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQAL 703 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHH
Confidence 3333444444444444444443332 1123334444444444455555555554444
No 381
>PRK10941 hypothetical protein; Provisional
Probab=55.43 E-value=45 Score=32.86 Aligned_cols=57 Identities=12% Similarity=-0.102 Sum_probs=29.1
Q ss_pred HHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 838 ECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 838 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+|.+.++++.|+...+.++... |.++.-+--.+-+|.+.|.+..|..-++.-.++-
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 34455555555555555555544 4444444445555555555555555555554443
No 382
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.24 E-value=26 Score=24.16 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=27.0
Q ss_pred hhhhhhhhHHHHHHHHHhccCChhhHHHHHHHH
Q 043758 4 INRGLIASAQQVIQRLIANSASLSDALSAADFA 36 (918)
Q Consensus 4 ~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~ 36 (918)
.+-|++.+|++..+.+++..|+...|..+...+
T Consensus 12 ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 12 YKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 567999999999999999999999998876544
No 383
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=54.96 E-value=1.5e+02 Score=30.88 Aligned_cols=51 Identities=8% Similarity=-0.110 Sum_probs=23.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHc--CChhHHHHHHHH
Q 043758 770 HIAAGEIDQAIGLFNQMNADGCVPDK----TVYNTLLKGLCQA--GRLSHVFSVFYS 820 (918)
Q Consensus 770 ~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~--g~~~~A~~~~~~ 820 (918)
+...+++..|.++|+++.+...+|+. ..|..+..+|... -++++|.+.++.
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34455666666666666554333322 2223333333322 345556665554
No 384
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.38 E-value=1.1e+02 Score=24.10 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=11.8
Q ss_pred hHHhhhhhhhHhcCChHHHHHHHHHHHhC
Q 043758 63 SALLLYQNDFVALGNIEDALRHFDRLISK 91 (918)
Q Consensus 63 ~a~~~~~~~~~~~g~~~~A~~~~~~~~~~ 91 (918)
++...+...+...|++++|++.+-.+.+.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33333333334444444444444444443
No 385
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.00 E-value=2.4e+02 Score=27.86 Aligned_cols=106 Identities=13% Similarity=0.061 Sum_probs=50.7
Q ss_pred hhhhhhhhHHHHHHHHHhc---cCC----hhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcC
Q 043758 4 INRGLIASAQQVIQRLIAN---SAS----LSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALG 76 (918)
Q Consensus 4 ~~~~~~~~A~~~~~~~~~~---~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g 76 (918)
++++++.+|..++-..... ... .+.+..+.+.....+.+.+......++..+...+..+....-|
T Consensus 1 v~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~f-------- 72 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKF-------- 72 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHH--------
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHH--------
Confidence 3678899999888765322 222 2223333444445555555555555555555554433333322
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHH
Q 043758 77 NIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYF 120 (918)
Q Consensus 77 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 120 (918)
++.|+.+- -......-++.....+...|.+.|++.+|..-|
T Consensus 73 -i~~ai~WS--~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 73 -IKAAIKWS--KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHH--HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred -HHHHHHHH--ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 23333333 111123336667777777788888877776544
No 386
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.83 E-value=1.9e+02 Score=26.55 Aligned_cols=24 Identities=0% Similarity=0.003 Sum_probs=14.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 043758 730 DIFLLLCGVGRMDDAYDHFQMMKR 753 (918)
Q Consensus 730 ~l~~~~~~~g~~~~A~~~~~~m~~ 753 (918)
+++..|-+.-+|.+..++++.|-+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666655
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.28 E-value=2.5e+02 Score=27.82 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 578 YTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 578 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
++.....|..+|.+.+|.++.+...+.+ +.+...+..++..+...||--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445567888999999999999998875 7788899999999999999888888887775
No 388
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=51.31 E-value=2.7e+02 Score=28.01 Aligned_cols=151 Identities=17% Similarity=0.056 Sum_probs=74.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhch----hcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc----
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAE----EKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY---- 144 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 144 (918)
...+++..|...+......+ +..+...+...|... .+..+|..+|....+.|.+ .....+...+..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 45556677777777666543 223444444444332 3567788888876666532 233344444443
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC-------chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc--
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNI-------RTVEAESFAREMESQGFYVDKLMYTSLINGYCS-- 215 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 215 (918)
..+..+|..+|+...+ .|..+.......+...|..-. +...|...|.+.-..+ +......|...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 126 PLDLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGL 201 (292)
T ss_pred ccCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCC
Confidence 3367777777777776 443332111222333332210 1224555555555543 33333333333322
Q ss_pred --CCChHHHHHHHHHHHhcC
Q 043758 216 --NRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 216 --~g~~~~A~~~~~~m~~~~ 233 (918)
..++++|...|.+.-+.|
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 235555666665555544
No 389
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.22 E-value=4.1e+02 Score=30.06 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=11.4
Q ss_pred HHHHHHHcCCchhHHhhh
Q 043758 51 LMKKLIKFGQSQSALLLY 68 (918)
Q Consensus 51 l~~~l~~~~~~~~a~~~~ 68 (918)
.+..+.-+|..++|..++
T Consensus 154 ~v~~lvlrG~~~~a~~lL 171 (566)
T PF07575_consen 154 YVQRLVLRGLFDQARQLL 171 (566)
T ss_dssp HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 566666677777777765
No 390
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.15 E-value=1.7e+02 Score=25.58 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=50.0
Q ss_pred HhcCCCCCh--hhHHHHHHHHHccCChhHHHHHHHHHHHcC-----CCCcHHhHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 043758 717 KDIEFMPNL--YLYNDIFLLLCGVGRMDDAYDHFQMMKREG-----LRPNQVTFCILINGHIAAGE-IDQAIGLFNQMNA 788 (918)
Q Consensus 717 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~ 788 (918)
.+.+..++. ...|+++...+..+...-.+.+++.+.... -..+..+|..++.+.+...- .--+..+|+-+.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 334444443 345666666666666666666666653210 01122356666666654444 3334556666666
Q ss_pred CCCCCCHHHHHHHHHHHHHc
Q 043758 789 DGCVPDKTVYNTLLKGLCQA 808 (918)
Q Consensus 789 ~~~~p~~~~~~~l~~~~~~~ 808 (918)
.+.++++..|..++.++.+.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 55666666666666665544
No 391
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=50.80 E-value=1.2e+02 Score=23.85 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=16.6
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhc
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNA 126 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 126 (918)
|..+...+...+...|++++|++.+-.++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455555555566666666666655555544
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.58 E-value=66 Score=26.87 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043758 782 LFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 782 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
.++.+....+.|++......+.+|.+-+++..|.++|+-+.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33333334455555555555555555555555555555444
No 393
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=50.34 E-value=3.3e+02 Score=28.71 Aligned_cols=421 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh----cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHH
Q 043758 79 EDALRHFDRLISKNIVPIKLACVSILRGLFAEE----KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEV 154 (918)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (918)
+.|.-++..+-..-+.|+. .+...++.+...+ +...|..++.-.+.+.+..++..-..+-++-.-.-+..+..++
T Consensus 102 emasvlls~lyadvi~p~q-ir~gf~~ll~s~ddl~vdipdavnvlalfiaraivddilpp~fl~r~~k~lp~~skg~qV 180 (645)
T KOG0403|consen 102 EMASVLLSALYADVIDPDQ-IRDGFIRLLESADDLAVDIPDAVNVLALFIARAIVDDILPPAFLKRAKKLLPDSSKGFQV 180 (645)
T ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHHHHhcccceecCchHHHHHHHHHHHHHHHhccChHHHHHHHhhCCCcccchhH
Q ss_pred HHHHHhcCCCCCCcc---------------------cHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043758 155 VNIMRKKKGLVPALH---------------------PYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGY 213 (918)
Q Consensus 155 ~~~~~~~~~~~~~~~---------------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 213 (918)
.+...+ +-...+.+ -.+.++.-|...|+..+|.++.+++.. +-.....+-++.
T Consensus 181 ~~~aek-sylsap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkral 254 (645)
T KOG0403|consen 181 INTAEK-SYLSAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRAL 254 (645)
T ss_pred HHHHHh-hccCCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHH
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 214 CSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG--------LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
...+.-..|..+.-...+.+..-+-..-+.+.+++.+.+ +...|...|+........-+.-.-+++-..-..
T Consensus 255 v~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~ 334 (645)
T KOG0403|consen 255 VDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVL 334 (645)
T ss_pred HHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccC
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHH
Q 043758 286 EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALML 365 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 365 (918)
.|+.+. .+.|+.-.. .+|+-|..+|+..+..+.++++-.-...|-...+..-+..-.+...-+.+.-+
T Consensus 335 ~g~~e~-~r~Fkk~~~-----------~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvl 402 (645)
T KOG0403|consen 335 PGDSEN-LRAFKKDLT-----------PIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVL 402 (645)
T ss_pred CCcchH-HHHHHHhhH-----------HHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHH
Q ss_pred HHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 043758 366 LCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYR 445 (918)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (918)
+..+...-.........+.-++....+. .=+...|-+.+...+...+.
T Consensus 403 lS~L~~e~fsteDv~~~F~mLLesaedt--------------------------------ALD~p~a~~elalFlARAVi 450 (645)
T KOG0403|consen 403 LSDLHGEVFSTEDVEKGFDMLLESAEDT--------------------------------ALDIPRASQELALFLARAVI 450 (645)
T ss_pred HHHhhcccCCHHHHHHHHHHHHhcchhh--------------------------------hccccccHHHHHHHHHHHHh
Q ss_pred CCcccHHHHHHHHHhcCChhhHHHHHHHhhcc----------------------------------cCccccCChHHHHH
Q 043758 446 PLVFTCNTLIKCFYQVGFLEGANAIVELMQDT----------------------------------EGNCKWGNLDSALD 491 (918)
Q Consensus 446 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~ 491 (918)
.+...-..+=....+......+.+.++.+... ..|...|+..+|.+
T Consensus 451 DdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~ 530 (645)
T KOG0403|consen 451 DDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACH 530 (645)
T ss_pred hcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCC
Q 043758 492 ILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRK 555 (918)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 555 (918)
+++++.---+. ...++.+++.+.-+.++-...+.+++..-+. ...|-+.|-.+|.+..+
T Consensus 531 CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 531 CIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERVYD 589 (645)
T ss_pred HHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhhhc
No 394
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.90 E-value=1.5e+02 Score=28.13 Aligned_cols=32 Identities=6% Similarity=-0.022 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
...+.++....+.|++++|.+.+.++...+-.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 45566777777777777777777777665544
No 395
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=49.35 E-value=2.9e+02 Score=27.79 Aligned_cols=187 Identities=11% Similarity=-0.012 Sum_probs=119.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc----CChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh----cC
Q 043758 703 NGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGV----GRMDDAYDHFQMMKREGLRPNQVTFCILINGHIA----AG 774 (918)
Q Consensus 703 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g 774 (918)
.+.+..+...+......+. ......+...|... .+...|..+|..+.+.|..+- ...|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a---~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEA---LFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHH---HHhHHHHHhcCCCccc
Confidence 3666777777776664332 23444444444432 457889999998877764332 2224444433 44
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c
Q 043758 775 EIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAG-------RLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA----N 843 (918)
Q Consensus 775 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 843 (918)
|..+|...|.++.+.|..+.......+...|...+ +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 89999999999999876543223344444454431 3347888888888765 33333334443333 3
Q ss_pred CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC---------------CHHHHHHHHHHHHhCCCCCCccc
Q 043758 844 CLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEK---------------HFHEAQIVLDVMHKRGRLPCTST 902 (918)
Q Consensus 844 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~~~~~~ 902 (918)
.+.++|...+....+.| . ......++ .+...| +...|...+......|.......
T Consensus 205 ~d~~~A~~wy~~Aa~~g-~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 274 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG-D--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEA 274 (292)
T ss_pred cCHHHHHHHHHHHHHCC-C--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHH
Confidence 37889999999999888 3 56666666 666555 88889999998888887655443
No 396
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.25 E-value=45 Score=31.30 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=49.0
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcch
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCW 133 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 133 (918)
++.+.|+.+.|.+++.++++.-+. ....|..+.....+.|+++.|...|++..+.+ ++|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld-p~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD-PEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC-ccccc
Confidence 446788889999999998876543 66788888888889999999999999999886 44443
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.44 E-value=76 Score=29.59 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 790 GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 790 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
...|++.+|..++.++...|+.++|.+..+++..
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567777777777777777777777777777764
No 398
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=48.24 E-value=32 Score=36.16 Aligned_cols=98 Identities=12% Similarity=0.025 Sum_probs=60.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.++++.|..++-.+++.++. ....|..-..++.+.+++..|+.=+..+++.. +.....|..-..++.+.+.+.+|+
T Consensus 15 l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHH
Confidence 4556677777777777776632 23333344466777777777777777777665 334445555556666667777777
Q ss_pred HHHHHHHhcCCCCCCcccHHHHH
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
..|+.... +.|+.......+
T Consensus 93 ~~l~~~~~---l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 93 LDLEKVKK---LAPNDPDATRKI 112 (476)
T ss_pred HHHHHhhh---cCcCcHHHHHHH
Confidence 77777654 555555444433
No 399
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=48.18 E-value=1.2e+02 Score=25.47 Aligned_cols=47 Identities=6% Similarity=0.133 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 743 DAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 743 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
+..+-++.+..-.+-|+......-+++|.+.+|+.-|..+|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444455555566677777777777777777777777777766654
No 400
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.00 E-value=2.8e+02 Score=27.27 Aligned_cols=94 Identities=9% Similarity=-0.035 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----H
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNA----DGCVPDKT-VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA----T 832 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~ 832 (918)
.+..+..-|++.++.+.+.+...+..+ .|.+.|+. +-..|.-.|....-+++-++..+.|.++|...+.. +
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~ 196 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKV 196 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHH
Confidence 455566667777777777665554433 36665542 22233334455555667777777777776554332 3
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHH
Q 043758 833 YEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 833 ~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
|..+. +....++.+|..++...+
T Consensus 197 Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 197 YKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHH--HHHHHhhHHHHHHHHHHh
Confidence 33332 123446777666666654
No 401
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.85 E-value=2.6e+02 Score=29.09 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=48.2
Q ss_pred ChhhHHHHHHHH--HccCChhHHHHHHHHHHHcCCCCcHHhHHHHH--------HHHHhcCCHHHHHHHHHHHHhC-CCC
Q 043758 724 NLYLYNDIFLLL--CGVGRMDDAYDHFQMMKREGLRPNQVTFCILI--------NGHIAAGEIDQAIGLFNQMNAD-GCV 792 (918)
Q Consensus 724 ~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--------~~~~~~g~~~~A~~~~~~~~~~-~~~ 792 (918)
.+.+|-.++-.+ ...+++++|..+-+.....-..-|..++..+. .+|-..|+...-...+...... .+.
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 344555444333 34467777777766655432334444554322 1233445555555555444332 122
Q ss_pred CC----HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043758 793 PD----KTVYNTLLKGLCQAGRLSHVFSVFYSM 821 (918)
Q Consensus 793 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 821 (918)
-| ....|++++.|...+.++.|..+..+.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 12 233455556666666666666555444
No 402
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.14 E-value=3.9e+02 Score=28.65 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=75.3
Q ss_pred HHHHHhCCChhHHHHHHHHHH---hcCCCCC-----hhhHHHHHHHHHccCChhHHHHHHHHHHH-------cCCCCcHH
Q 043758 697 FSAVFSNGKKGTVQKIVLKVK---DIEFMPN-----LYLYNDIFLLLCGVGRMDDAYDHFQMMKR-------EGLRPNQV 761 (918)
Q Consensus 697 ~~~~~~~g~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~~ 761 (918)
....+-.|++..|.+++.... +.|...+ ...||.|.-...+.|.+..+..+|.+..+ .|++|...
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 344555699999999887553 2232222 23457776666777888877777777653 46665331
Q ss_pred -----------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 762 -----------TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQA 808 (918)
Q Consensus 762 -----------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 808 (918)
+|| ..-.|...|++-.|.+.|.+.... +..++..|-.|..+|.-.
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 333 344678899999999999998876 566888999999988643
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.06 E-value=86 Score=21.68 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=7.7
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 043758 804 GLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~ 822 (918)
++.+.|++++|.+.++.+.
T Consensus 10 g~ykl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALL 28 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444444
No 404
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.80 E-value=57 Score=25.76 Aligned_cols=45 Identities=4% Similarity=-0.081 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 846 SIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDV 890 (918)
Q Consensus 846 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 890 (918)
.+.-++.++++...+.+..+..+.+|+-.|...|+.+.|.+-++.
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 334455666666666666677778888888888888888887775
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.51 E-value=67 Score=25.51 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=31.3
Q ss_pred HhcCChHHHH----HHHHHHHhCCCCC----ChhhHHHHHHHhhchhcHHHHHHHHHHHhhc
Q 043758 73 VALGNIEDAL----RHFDRLISKNIVP----IKLACVSILRGLFAEEKFLEAFDYFIKICNA 126 (918)
Q Consensus 73 ~~~g~~~~A~----~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 126 (918)
.+.|++..|. +.|+.....+..+ -..+.-.+...+...|++++|+..+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455555553 4455544443222 1223334556677788888888888887653
No 406
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.33 E-value=53 Score=23.61 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=17.6
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 759 NQVTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 759 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
|..-.-.+|.++...|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444566666667777777666666554
No 407
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.12 E-value=1e+02 Score=32.37 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=32.9
Q ss_pred HHHHHHHccCChhhHHHHHHHHHh------CCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 835 HLLECFCANCLSIPAFNMFKEMIV------HDHVP-CLSNCNWLLNILCQEKHFHEAQIVLDVM 891 (918)
Q Consensus 835 ~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 891 (918)
.|+...|-.|++..|++.++.+.- ..+++ ...+++.+|-+|...+||.+|.+.+...
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666655421 11122 2556667777777777777777766654
No 408
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.80 E-value=22 Score=30.07 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=20.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 043758 737 GVGRMDDAYDHFQMMKREGLRPNQVTFCILING 769 (918)
Q Consensus 737 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 769 (918)
..|.-.+|..+|.+|+++|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345666777777777777777763 5556544
No 409
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.66 E-value=83 Score=22.62 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=23.6
Q ss_pred hhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH-----cCCChhHHHHH
Q 043758 107 LFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC-----YKGFLDEVLEV 154 (918)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~ 154 (918)
+...|++-+|-++++.+......+....+..+|.... +.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3455666666666666664332334444444444332 34555555443
No 410
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.65 E-value=4.5e+02 Score=28.94 Aligned_cols=186 Identities=14% Similarity=0.098 Sum_probs=114.7
Q ss_pred hhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHH
Q 043758 7 GLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFD 86 (918)
Q Consensus 7 ~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~ 86 (918)
.-+.+|+..|..+....+. +.++.++. ..+.-..+.-++..++..+|+.+.|.++. +.++-.|+
T Consensus 252 ~sYeqaq~~F~~av~~~d~-n~v~~lL~-----ssPYHvdsLLqva~~~r~qgD~e~aadLi----------eR~Ly~~d 315 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDP-NNVLILLI-----SSPYHVDSLLQVADIFRFQGDREMAADLI----------ERGLYVFD 315 (665)
T ss_pred hHHHHHHHHHHHHHhhcCC-cceeeeec-----cCCcchhHHHHHHHHHHHhcchhhHHHHH----------HHHHHHHH
Confidence 3456777777776655433 12222111 11222233444556778888888888875 55666677
Q ss_pred HHHhCCCCCC-------------hhhHH---HHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH-cCCChh
Q 043758 87 RLISKNIVPI-------------KLACV---SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC-YKGFLD 149 (918)
Q Consensus 87 ~~~~~~~~~~-------------~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 149 (918)
++......|. ...|- .-++.+.++|=+..|.++-+-+......-|+.....+|+-|+ +..++.
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYq 395 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQ 395 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHH
Confidence 7665443221 22222 345567888999999999998888775557777777787665 677888
Q ss_pred HHHHHHHHHHhc--CCCCCCcccHHHHHHHHhccCc---hHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043758 150 EVLEVVNIMRKK--KGLVPALHPYKSLFYALCKNIR---TVEAESFAREMESQGFYVDKLMYTSLING 212 (918)
Q Consensus 150 ~A~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 212 (918)
--+++++..... ...-|+...-.++...|.+... -..|...+.+.... -+...+-|+..
T Consensus 396 wiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~----~P~vl~eLld~ 459 (665)
T KOG2422|consen 396 WIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH----HPLVLSELLDE 459 (665)
T ss_pred HHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh----CcHHHHHHHHh
Confidence 888888887542 2345666666677777766554 45677777777776 44444555443
No 411
>PRK10941 hypothetical protein; Provisional
Probab=45.51 E-value=1.2e+02 Score=30.02 Aligned_cols=60 Identities=12% Similarity=-0.045 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC-cccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA-LHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.+.+-.+|.+.++++.|+++.+.+.. +.|+ ..-+.-..-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34445556666677777777666665 3333 233344445566666666666666666554
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.40 E-value=93 Score=24.69 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 868 CNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 868 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
...++......|++++|...+++..+.
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344666677777777777777776553
No 413
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.29 E-value=1.1e+02 Score=26.88 Aligned_cols=58 Identities=22% Similarity=0.205 Sum_probs=26.5
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043758 751 MKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAG 809 (918)
Q Consensus 751 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 809 (918)
+.+.|++++. --..++..+...++.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 12 lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 12 LKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444433 222344444444444555555555555544444444333444444444
No 414
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.10 E-value=3.1e+02 Score=26.93 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHcc-CChhHHHHHHHHHHHcCCCCcHH-----hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC
Q 043758 725 LYLYNDIFLLLCGV-GRMDDAYDHFQMMKREGLRPNQV-----TFCILINGHIAAGEIDQAIGLFNQMNA----DGCVPD 794 (918)
Q Consensus 725 ~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~ 794 (918)
.....+++..+... ..++..+.+....++-..+.+.. .-.-++..+.+.|.+.+|+.+...+.. ..-+|+
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~ 163 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence 34455555555433 33555555555544322111211 123467788899999999987665544 344444
Q ss_pred HHHHH-HHHHHHHHcCChhHHHHHHHHHHh----CCCCCCHHHHHHHHHH--HHccCChhhHHHHHHHHHh
Q 043758 795 KTVYN-TLLKGLCQAGRLSHVFSVFYSMHK----RGFVPKKATYEHLLEC--FCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 795 ~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~ 858 (918)
..+.. .=-.+|..-.++.++..-+..... .-++|....--.++++ .|...++..|...|-+..+
T Consensus 164 Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 164 LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 32221 112345444555555544443331 1133333333333332 3555667777777766654
No 415
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.40 E-value=2e+02 Score=32.43 Aligned_cols=186 Identities=12% Similarity=0.131 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH----------hHHHHHHHHHhc
Q 043758 707 GTVQKIVLKVKDIEFMPNL---YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV----------TFCILINGHIAA 773 (918)
Q Consensus 707 ~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------~~~~li~~~~~~ 773 (918)
++...++.+|+..--.|++ .+...++-.|....+++..+++.+.+... ||.. .|...++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 4455667777765555654 55666777777888899999999988873 4322 233333334466
Q ss_pred CCHHHHHHHHHHHHhC--CCCCCHHHHHHHH-------HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 043758 774 GEIDQAIGLFNQMNAD--GCVPDKTVYNTLL-------KGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANC 844 (918)
Q Consensus 774 g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 844 (918)
|+.++|+...-.+++. .+.||..+...-| ..|...+..+.|.+.+++..+ +.|+...=-.+...+...|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 8999999888777776 4666654322211 224455677888888888875 6676653222222223333
Q ss_pred C-hhhHHH------HHHHHH-hCCCCCCcccHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 845 L-SIPAFN------MFKEMI-VHDHVPCLSNCNWLLN---ILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 845 ~-~~~A~~------~~~~~~-~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
. ++..++ .+..++ ++|--....-|+-++. +-.-++++.+|.+.-+.|-+....
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 2 222222 223333 2232222333333333 334568899999999988887643
No 416
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.36 E-value=9.2e+02 Score=32.16 Aligned_cols=537 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCC
Q 043758 311 YTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPT 390 (918)
Q Consensus 311 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (918)
|..-+-.++.......-..+..-+.+.......+.+-.++.-+.-....+....+.+++...-....+.
T Consensus 1244 w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~~~~~~----------- 1312 (2382)
T KOG0890|consen 1244 WSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLDEAATN----------- 1312 (2382)
T ss_pred HHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhccccc-----------
Q ss_pred CChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChH----HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhh
Q 043758 391 GDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYE----KAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEG 466 (918)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 466 (918)
.....+...+...+..+...+-..++|. +++...+...+.... -|...+.......+...
T Consensus 1313 ------------t~ns~~~~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~sk~~R----~~~~~~~~Tt~~~~~~~ 1376 (2382)
T KOG0890|consen 1313 ------------TINSRGTASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIWSKVNR----FWKSIMSWTTTGEDIEG 1376 (2382)
T ss_pred ------------ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhh----hheeeeccccCCCchhh
Q ss_pred HHHHHHHhhcc---cCccccCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 043758 467 ANAIVELMQDT---EGNCKWGNLDSALDILDQ----MEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD 539 (918)
Q Consensus 467 a~~~~~~~~~~---~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 539 (918)
...++....+. .+..+++.+.+|...+++ ..+. ......+..+...|..-++++....+...-.. .|+
T Consensus 1377 v~~fL~~iP~~tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s 1451 (2382)
T KOG0890|consen 1377 VQSFLDLIPSDTLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS 1451 (2382)
T ss_pred hHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 540 EVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINH 619 (918)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 619 (918)
..- -|-.....|++..|...|+.+.+.+ ++...+++.++......|.++.+....+-......+-....++.-+.+
T Consensus 1452 l~~---qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~ea 1527 (2382)
T KOG0890|consen 1452 LYQ---QILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEA 1527 (2382)
T ss_pred HHH---HHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHH
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHH
Q 043758 620 FLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSA 699 (918)
Q Consensus 620 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (918)
-.+.++++....... .-+..+|....-+.+......+.....-+..+..++.+..-+..-.... ++....+.
T Consensus 1528 aW~l~qwD~~e~~l~-------~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~-Sy~~~Y~~ 1599 (2382)
T KOG0890|consen 1528 AWRLSQWDLLESYLS-------DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEG-SYVRSYEI 1599 (2382)
T ss_pred Hhhhcchhhhhhhhh-------cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccc-hHHHHHHH
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCChhhHH-----HHHHHHHccCChhHHHHHHHHHHHcCCCCcHH-----hHHHHHHH
Q 043758 700 VFSNGKKGTVQKIVLKVKDIEFMPNLYLYN-----DIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV-----TFCILING 769 (918)
Q Consensus 700 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----~~~~li~~ 769 (918)
..+.-..-+...............+...-. .+-..-....-.+-.+.+-..+......|+.. +|-.....
T Consensus 1600 ~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAri 1679 (2382)
T KOG0890|consen 1600 LMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARI 1679 (2382)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--------------------
Q 043758 770 HIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK-------------------- 829 (918)
Q Consensus 770 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------------- 829 (918)
....|.++.|....-+..+.+ -+..+-..+..+-..|+-..|+.++++..+. ..|+
T Consensus 1680 aR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~-~~~~~~~~~~~~p~~~n~~i~~~~ 1755 (2382)
T KOG0890|consen 1680 ARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK-NFPDLHTPYTDTPQSVNLLIFKKA 1755 (2382)
T ss_pred HHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh-hcccccCCccccchhhhhhhhhhH
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccchhh
Q 043758 830 KATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPCTSTRGFW 906 (918)
Q Consensus 830 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 906 (918)
...+...+..-.+ -.-...++.+..+.+.. |.....+++++ .-..++++.-+.++.+++.....++
T Consensus 1756 ~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail-~ewe~~hy~l~---------~yy~kll~~~~~~~~E~~g~~~~~l 1821 (2382)
T KOG0890|consen 1756 KLKITKYLEESGN-FESKDILKYYHDAKAIL-PEWEDKHYHLG---------KYYDKLLEDYKSNKMEKSGRVLSLL 1821 (2382)
T ss_pred HHHHHHHHHHhcc-hhHHHHHHHHHHHHHHc-ccccCceeeHH---------HHHHHHhhhhhcccccccccHHHHH
No 417
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.05 E-value=3.7e+02 Score=27.51 Aligned_cols=82 Identities=7% Similarity=-0.146 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhCCC----CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 043758 184 TVEAESFAREMESQGF----YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWV 259 (918)
Q Consensus 184 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 259 (918)
...|.+.|+.....+. ..++.....++...++.|+.+.-..+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777777776422 34556666677777777776554455444443 3455666777777777777777777
Q ss_pred HHHHHHhCC
Q 043758 260 LYSQMSDWG 268 (918)
Q Consensus 260 ~~~~~~~~~ 268 (918)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 777777653
No 418
>PRK12798 chemotaxis protein; Reviewed
Probab=43.80 E-value=4.2e+02 Score=28.00 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=109.2
Q ss_pred hhcHHHHHHHHHHHhhcCCCCcchhHHHHHHH-HHcCCChhHHHHHHHHHHhcCCCCCCc----ccHHHHHHHHhccCch
Q 043758 110 EEKFLEAFDYFIKICNAGVDLNCWSYNVLIDG-LCYKGFLDEVLEVVNIMRKKKGLVPAL----HPYKSLFYALCKNIRT 184 (918)
Q Consensus 110 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~ 184 (918)
.|+-.+|...+..+.....++....|-.|+.+ .....+...|++.|++.+= .-|-. ....--+....+.|+.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 58888888888888777777777777777754 4456688888888888753 22332 2232333445677888
Q ss_pred HHHHHHHHHHHhCCCCCChhh---HHHHHHHHhcCC---ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043758 185 VEAESFAREMESQGFYVDKLM---YTSLINGYCSNR---NMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGW 258 (918)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 258 (918)
+++..+-.+...+-. .++.. +.....++.+.+ ..+.-..++..|.. .--...|..+.+.-...|+.+-|.
T Consensus 202 ~rf~~la~~Y~rRF~-~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~ 277 (421)
T PRK12798 202 DKFEALARNYLRRFR-HSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELAR 277 (421)
T ss_pred HHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHH
Confidence 877666666555411 13322 222233333333 22332333333321 112347888888888889988888
Q ss_pred HHHHHHHhCCCCccHh-hHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCc
Q 043758 259 VLYSQMSDWGFQPNMV-TDLIMISNY--CREGEVDAALMLLNSKVSSNLAPSV 308 (918)
Q Consensus 259 ~~~~~~~~~~~~~~~~-~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~ 308 (918)
-.-++.....-..+.. ....|-.+. .-..+++.+.+.+..+....+.+..
T Consensus 278 ~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 278 FASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhh
Confidence 7777776653121111 111111111 2345688888888888776655544
No 419
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.57 E-value=29 Score=34.67 Aligned_cols=92 Identities=12% Similarity=-0.029 Sum_probs=62.5
Q ss_pred hchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccCchHH
Q 043758 108 FAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKNIRTVE 186 (918)
Q Consensus 108 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~ 186 (918)
...|.++.|++.|-..+... ++....|..-.+++.+.+....|++=++...+ +.||. ..|-.--.+..-.|++++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchHH
Confidence 45677888888888777776 56666777777788888888888887777765 34442 233333334445578888
Q ss_pred HHHHHHHHHhCCCCCCh
Q 043758 187 AESFAREMESQGFYVDK 203 (918)
Q Consensus 187 a~~~~~~~~~~~~~~~~ 203 (918)
|...|....+.+..+..
T Consensus 201 aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHHhccccHHH
Confidence 88888888777654333
No 420
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.70 E-value=3.9e+02 Score=27.36 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHhcCCC---CCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 043758 148 LDEVLEVVNIMRKKKGL---VPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMR 224 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (918)
...|.+.|+........ ..+......++....+.|+.+.-..+++..... ++......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 55677788887762122 234445556666677778877766676666654 367778889999998999988888
Q ss_pred HHHHHHhcC-CCCChhhHHHHHHHHHhcCCh--hHHHHHHHH
Q 043758 225 LFFRMLKTG-CEPDSYTCNTLIHGFFKMGLF--DKGWVLYSQ 263 (918)
Q Consensus 225 ~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~--~~a~~~~~~ 263 (918)
+++.....+ +++. . ...++.++...+.. +.+++.+..
T Consensus 223 ~l~~~l~~~~v~~~-d-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-D-IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TT-T-HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccH-H-HHHHHHHHhcCChhhHHHHHHHHHH
Confidence 888888753 3333 3 34444445433333 555555443
No 421
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.67 E-value=3e+02 Score=27.91 Aligned_cols=88 Identities=15% Similarity=0.038 Sum_probs=46.4
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhcC---CCCcchhHH--HHHHHHHcCCChhHHHHHHHHHHh----cCCCCCCcc-cH
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNAG---VDLNCWSYN--VLIDGLCYKGFLDEVLEVVNIMRK----KKGLVPALH-PY 171 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~-~~ 171 (918)
.++....+.++.++|++.++++.+.- -.|+...|. ..++.+...||..++.++++...+ ..+++|+++ .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 33444445567777777777766421 134444433 334555567777777777776653 134455433 34
Q ss_pred HHHHHHH-hccCchHHHHH
Q 043758 172 KSLFYAL-CKNIRTVEAES 189 (918)
Q Consensus 172 ~~ll~~~-~~~g~~~~a~~ 189 (918)
+.+-.-| ...|++....+
T Consensus 160 Y~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 4444433 34455554433
No 422
>PRK12798 chemotaxis protein; Reviewed
Probab=42.66 E-value=4.3e+02 Score=27.87 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=80.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHH-HhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHH
Q 043758 738 VGRMDDAYDHFQMMKREGLRPNQVTFCILINGH-IAAGEIDQAIGLFNQMNAD--GCVPDKTVYNTLLKGLCQAGRLSHV 814 (918)
Q Consensus 738 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 814 (918)
.|+..+|.+.|..+...-.++....+-.|+.+- ....++.+|+++|+...-. |.-........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 467777777777766555555555666666543 3455777777777776543 2212234444555556677777776
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 815 FSVFYSMHKR-GFVPKK-ATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPC--LSNCNWLLNILCQEKHFHEAQIVLDV 890 (918)
Q Consensus 815 ~~~~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 890 (918)
..+-.+.... .-.|=. ..+..+..++.+..+-..- ..+..++..- +|+ ...|..+++.-.-.|+.+-|.-.-++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~-d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFM-DPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhc-CchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6655444432 111211 1222233333333322222 2233333221 222 44566666666677777777666666
Q ss_pred HHhCC
Q 043758 891 MHKRG 895 (918)
Q Consensus 891 ~~~~~ 895 (918)
.+...
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 66554
No 423
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.12 E-value=96 Score=20.85 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=19.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 586 VKKGMVDLGCMYLDRMLADGFVPNVVLYTALIN 618 (918)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 618 (918)
.+.|-++++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345556666666666666666666666555443
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.82 E-value=1e+02 Score=20.67 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=15.8
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 806 CQAGRLSHVFSVFYSMHKRGFVPKKATYEHLL 837 (918)
Q Consensus 806 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 837 (918)
.+.|-..++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34444455555555555555555544444443
No 425
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.82 E-value=2e+02 Score=23.69 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=16.8
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhh
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICN 125 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 125 (918)
-|..++.-|...|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 455666666666666666666666554
No 426
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.13 E-value=4e+02 Score=27.04 Aligned_cols=117 Identities=8% Similarity=-0.006 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc------CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH
Q 043758 112 KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY------KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV 185 (918)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 185 (918)
-.+++..++++....+ .|........|.++-. .-+|..-..+|+.+.. ..|+..+-..-.-+.++...++
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHH
Confidence 3566666666666655 3555666665555431 2356666667776654 4455444433444455555566
Q ss_pred HHHHHHHHHHhCCCCCChhhHH-HHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 186 EAESFAREMESQGFYVDKLMYT-SLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
.+....+.+...+---.-..|. .-...+.+.|+.++|...|++....
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 6666666665542211222333 3344556677777777777777654
No 427
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.00 E-value=29 Score=36.50 Aligned_cols=89 Identities=10% Similarity=0.008 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccC
Q 043758 767 INGHIAAGEIDQAIGLFNQMNADGCVPDKT-VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCANC 844 (918)
Q Consensus 767 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~ 844 (918)
...+...++++.|+.++.++++ ..|+-. .|..-..++.+.+++..|+.-+....+. .|+.. .|-.=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 3445566677777777777776 345432 3333335666677777777666666543 23222 2222223444455
Q ss_pred ChhhHHHHHHHHHhC
Q 043758 845 LSIPAFNMFKEMIVH 859 (918)
Q Consensus 845 ~~~~A~~~~~~~~~~ 859 (918)
++.+|+..++.....
T Consensus 87 ~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL 101 (476)
T ss_pred HHHHHHHHHHHhhhc
Confidence 666666666665544
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.47 E-value=1.9e+02 Score=26.34 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=12.1
Q ss_pred HHHHHcCChhHHHHHHHHHH
Q 043758 803 KGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 803 ~~~~~~g~~~~A~~~~~~~~ 822 (918)
-.|.+.|.+++|.+++++..
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHhcCchHHHHHHHHHHh
Confidence 34566666666666666655
No 429
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.42 E-value=5.9e+02 Score=28.81 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 560 CQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
....+.++.+-...+.....-++..|.+.|-.+.+.++.+.+-..- ....-|..-+..+.++|+...+..+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444433222344455566777777777777777777655431 122345555556666676666655555554
No 430
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.23 E-value=3.3e+02 Score=25.88 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=56.3
Q ss_pred CCChhhHHHHH-HHHHccCChhHHHHHHHHHHHcCCCC---cHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 043758 722 MPNLYLYNDIF-LLLCGVGRMDDAYDHFQMMKREGLRP---NQVT--FCILINGHIAAGEIDQAIGLFNQMNADGCVPDK 795 (918)
Q Consensus 722 ~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 795 (918)
.+...-+|.|+ +.+...| +.+|...|.+ +.|+.| |..+ -..-|......|++++|++....+...-+..|.
T Consensus 23 ~~~~~d~n~LVmnylv~eg-~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEG-YVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred CcchhhHHHHHHHHHHhcc-HHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 44455555555 4444555 4445554443 344555 2222 244566678889999999888877654333343
Q ss_pred HHHHHHHH----HHHHcCChhHHHHHHHHHH
Q 043758 796 TVYNTLLK----GLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 796 ~~~~~l~~----~~~~~g~~~~A~~~~~~~~ 822 (918)
..+-.+.. -+.+.|..++|+++.+.-.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 33333322 2567888888888876643
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.20 E-value=1.8e+02 Score=26.47 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043758 486 LDSALDILDQMEVRGPKPSV-------AIYDAIIGHLCKEKRILEAEDMFKRMLK 533 (918)
Q Consensus 486 ~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 533 (918)
++.|+.+|+.+.+.-..|.. .+--..+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45666666666654333211 1122344566777777777777777665
No 432
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.77 E-value=4.1e+02 Score=28.50 Aligned_cols=9 Identities=0% Similarity=-0.156 Sum_probs=3.8
Q ss_pred hccCchHHH
Q 043758 179 CKNIRTVEA 187 (918)
Q Consensus 179 ~~~g~~~~a 187 (918)
+..|+.+.+
T Consensus 76 ~~~g~~~~v 84 (413)
T PHA02875 76 VEEGDVKAV 84 (413)
T ss_pred HHCCCHHHH
Confidence 344444443
No 433
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.52 E-value=3.4e+02 Score=25.79 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=47.7
Q ss_pred ccCChhHHHHHHHHHHH----cCCCCcHH--hHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCC----C-HHHH
Q 043758 737 GVGRMDDAYDHFQMMKR----EGLRPNQV--TFCILINGHIAAGE-------IDQAIGLFNQMNADGCVP----D-KTVY 798 (918)
Q Consensus 737 ~~g~~~~A~~~~~~m~~----~~~~p~~~--~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~p----~-~~~~ 798 (918)
....+++|++.|.-..- .+.+|... .+..+...|...|+ ...|.+.|.+..+..-.| + ....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34456666666554322 23344432 33334444555565 345666666666552221 1 2333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCC
Q 043758 799 NTLLKGLCQAGRLSHVFSVFYSMHKRG 825 (918)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (918)
..+.....+.|+.++|.+.|.++...+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 445556667788888888888777543
No 434
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.18 E-value=3e+02 Score=29.09 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=36.0
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChh--hHHHHHHHHhc--CCChHHHHHHHHHHHhc
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKL--MYTSLINGYCS--NRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 232 (918)
+...+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44667888888888888876 444443 45555566653 56778888888876643
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.23 E-value=37 Score=28.72 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=27.2
Q ss_pred hccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHH
Q 043758 21 ANSASLSDALSAADFAAVRGMRFDSGSYSALMKKL 55 (918)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l 55 (918)
+...+..+|..+|+.|..+|.+||. |+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4456777899999999999999998 78887654
No 436
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.19 E-value=4.9e+02 Score=27.25 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 607 VPNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 607 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
+-...++-.+...+.+.|+.+.|.+++++.+
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455667777777888888888888777765
No 437
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.05 E-value=5.4e+02 Score=27.65 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=22.8
Q ss_pred HHHHHHHHc---cCChHHHHHHHHHHHHCCCCCCcc
Q 043758 417 TIYISALCK---GGKYEKAYVCLFQLVNFGYRPLVF 449 (918)
Q Consensus 417 ~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 449 (918)
..++.++.+ .++.+.|+.++..|.+.|..|...
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 344444444 478888999999999888666543
No 438
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.84 E-value=1e+02 Score=22.15 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=8.1
Q ss_pred HHHHHHcCCChHHHHHHHHHH
Q 043758 546 MINGYLQNRKPIEACQLFEKM 566 (918)
Q Consensus 546 l~~~~~~~~~~~~A~~~~~~~ 566 (918)
+|.++...|++++|.+....+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444444444443333
No 439
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.85 E-value=5.2e+02 Score=27.11 Aligned_cols=63 Identities=8% Similarity=-0.071 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 043758 506 AIYDAIIGHLCKEKRILEAEDMFKRMLKAG--IDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE 568 (918)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 568 (918)
..+.-+...|..+|+++.|++.|.+....- .......|-.+|..-.-.|+|-.....-.+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456778889999999999999999976531 112233444555555556677666655555544
No 440
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.84 E-value=2.7e+02 Score=28.22 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=40.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHc
Q 043758 767 INGHIAAGEIDQAIGLFNQMNAD-GCVP--DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCA 842 (918)
Q Consensus 767 i~~~~~~g~~~~A~~~~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~ 842 (918)
.+-|.+..++..|...|.+-+.. .-.| +...|+.-.-+-..-|++..|+.-...... +.|+.. .+..-..|+..
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHHHH
Confidence 34455555555555555555444 1122 224444444444444555555555544443 344332 33333334444
Q ss_pred cCChhhHHHHHHHH
Q 043758 843 NCLSIPAFNMFKEM 856 (918)
Q Consensus 843 ~~~~~~A~~~~~~~ 856 (918)
..++.+|....++.
T Consensus 166 Le~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 166 LERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHhhh
Confidence 45555555444443
No 441
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.75 E-value=3.7e+02 Score=26.85 Aligned_cols=43 Identities=9% Similarity=0.182 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 746 DHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 746 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
++|+.|...++.|...+|.-+--.+.+.=.+.+++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444555555555555544443334444455555555555554
No 442
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=36.12 E-value=77 Score=20.04 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
.+|..|+.+-...+++++|.+-++..++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999998887653
No 443
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=36.06 E-value=74 Score=24.93 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=24.2
Q ss_pred hhhhhHHHHHHHHHh-ccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhH
Q 043758 7 GLIASAQQVIQRLIA-NSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSA 64 (918)
Q Consensus 7 ~~~~~A~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a 64 (918)
|+.++|+.+++.+.+ +.|.| +..++.+|...|....|
T Consensus 48 g~~~aa~~Ll~~L~~~r~~~w---------------------f~~Fl~AL~~~g~~~la 85 (88)
T cd08812 48 GNIAAAEELLDRLERCDKPGW---------------------FQAFLDALRRTGNDDLA 85 (88)
T ss_pred ChHHHHHHHHHHHHHhccCCc---------------------HHHHHHHHHHcCCccHH
Confidence 677888888888776 55553 45566666666654443
No 444
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.84 E-value=4.6e+02 Score=26.19 Aligned_cols=161 Identities=12% Similarity=0.110 Sum_probs=72.9
Q ss_pred hhhHhcC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 70 NDFVALG-NIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 70 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
.-+.+.| ...-|.++|....... ..+.+++++.+.+.-+.-.++ +||+..+-..+..-+...|--
T Consensus 174 d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~ 239 (412)
T KOG2297|consen 174 DNLVKEGIALSFAVKLFKEWLVEK------DINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLK 239 (412)
T ss_pred hhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHH
Confidence 3334444 2455777777765432 345666665554433333333 366766666666655554422
Q ss_pred hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHH-HHHHhCCCCCChh----hHHHHHHHHhcCCChHH-H
Q 043758 149 DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFA-REMESQGFYVDKL----MYTSLINGYCSNRNMKM-A 222 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~-A 222 (918)
+-..-.=.++.. ..--..-..|..-..+...+++..... ++|.+.+++ ++. .|..++++---+.+-+. |
T Consensus 240 elvey~~~q~~~----~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlP-e~eVi~ivWs~iMsaveWnKkeelva 314 (412)
T KOG2297|consen 240 ELVEYHRNQQSE----GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLP-ETEVIGIVWSGIMSAVEWNKKEELVA 314 (412)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCC-CceEEeeeHhhhhHHHhhchHHHHHH
Confidence 111100000000 000001112222233344455554433 445555443 433 47777665433322111 2
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043758 223 MRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGW 258 (918)
Q Consensus 223 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 258 (918)
.+.++ ...+|.-|+.+++..|+.+...
T Consensus 315 ~qalr---------hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 315 EQALR---------HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHH---------HHHhhhHHHHHHhcCChHHHHH
Confidence 22222 2235777888888888776543
No 445
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.12 E-value=4.2e+02 Score=25.50 Aligned_cols=96 Identities=18% Similarity=0.230 Sum_probs=52.5
Q ss_pred hhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHH
Q 043758 107 LFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVE 186 (918)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 186 (918)
+...+++++|++.+-. ..+.| ..-..++.++...|+.+.|+.++..... ...+...-..++.. ..++.+.+
T Consensus 88 ~LD~~~~~~A~~~L~~---ps~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~E 158 (226)
T PF13934_consen 88 LLDHGDFEEALELLSH---PSLIP--WFPDKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTE 158 (226)
T ss_pred HhChHhHHHHHHHhCC---CCCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHH
Confidence 4666788888877732 22222 2233567777778888888888877642 11112222222333 55577777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 043758 187 AESFAREMESQGFYVDKLMYTSLINGYC 214 (918)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~li~~~~ 214 (918)
|..+-+...+.. ....+..++..+.
T Consensus 159 Af~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 159 AFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 777665554421 1234555555444
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.00 E-value=2e+02 Score=28.17 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=28.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHK----RGF-VPKKATYEHLLECFCANCLSIPAFNMFKE 855 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 855 (918)
.+...|...|++++|.++|+.+.. .|. .+...+...+..|..+.|+.++.....-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455556666666666666666531 121 12333444555555555555555444433
No 447
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.61 E-value=4.2e+02 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=18.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCV 792 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~ 792 (918)
++--+...|+++.|+++.+-+++.|..
T Consensus 89 ~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 89 VMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 333456778888888888888777543
No 448
>PRK00971 glutaminase; Provisional
Probab=34.55 E-value=5e+02 Score=26.26 Aligned_cols=22 Identities=14% Similarity=-0.086 Sum_probs=14.6
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHH
Q 043758 630 SRLENLMVTNQIEFDLIAYIALVSG 654 (918)
Q Consensus 630 ~~~~~~~~~~~~~p~~~~~~~ll~~ 654 (918)
..+|+++ |.+|+...||++++.
T Consensus 81 ~~V~~~V---G~EPSG~~FNSi~~L 102 (307)
T PRK00971 81 EEVWQRV---GKEPSGDPFNSLVQL 102 (307)
T ss_pred HHHHHHh---CCCCCCCCCcchhhh
Confidence 3445554 788888888877543
No 449
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.00 E-value=1.2e+02 Score=28.19 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=19.1
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 200 YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
.|++.+|..++.++...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555666666666666666666666555543
No 450
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.95 E-value=2.3e+02 Score=32.82 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=107.3
Q ss_pred hhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHH
Q 043758 110 EEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAES 189 (918)
Q Consensus 110 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 189 (918)
+.++++.+.+.+...-.| .++|.-+.+.|..+-|+...+.=.. .+..+..+|+.+.|.+
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~t-------------RF~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERT-------------RFELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcch-------------heeeehhcCCHHHHHH
Confidence 356777776665433222 3455556677777777766544332 2344567899988876
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043758 190 FAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGF 269 (918)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 269 (918)
.-..+- +..+|..|......+|+.+-|+-.|++.+.. ..|--.|.-.|+.++-.++......++
T Consensus 665 ~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~iae~r~- 728 (1202)
T KOG0292|consen 665 AAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMKIAEIRN- 728 (1202)
T ss_pred HHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHHHHHhhh-
Confidence 644332 6789999999999999999999999887642 222223455678777666666554432
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 270 QPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 270 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
|..+.. ... .-.|+.++-.++++..-. -...|- .-..+|.-++|.++.++...+
T Consensus 729 --D~~~~~-qna--lYl~dv~ervkIl~n~g~-----~~layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 729 --DATGQF-QNA--LYLGDVKERVKILENGGQ-----LPLAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred --hhHHHH-HHH--HHhccHHHHHHHHHhcCc-----ccHHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 222211 111 225777777777765432 122231 123467778888888777654
No 451
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.19 E-value=4.5e+02 Score=25.34 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=33.2
Q ss_pred HHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 105 RGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 105 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
+.+...|++-++++--.+++... +.|..+|..-..+.+..-+..+|.+=|..+.+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 33445566666666666666554 55666666666666666666666666666554
No 452
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.72 E-value=7.2e+02 Score=30.22 Aligned_cols=129 Identities=10% Similarity=-0.060 Sum_probs=66.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC----cccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 043758 134 SYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA----LHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSL 209 (918)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (918)
.|-.+++.+-+.+-.+.+.++-..+++. .+++ ..+++.+.+-....|.+-+|...+-..... .........+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRql 1060 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHH
Confidence 4556667777777777777777776652 2222 234455555566666666665554433221 1123345555
Q ss_pred HHHHhcCCChH------------HHHH-HHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHH-HHHHHHhC
Q 043758 210 INGYCSNRNMK------------MAMR-LFFRMLKTGCEPDS-YTCNTLIHGFFKMGLFDKGWV-LYSQMSDW 267 (918)
Q Consensus 210 i~~~~~~g~~~------------~A~~-~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~ 267 (918)
+..++.+|+++ +..+ +++..-+. ..... ..|+.|-.-+...+++.+|-. +|+.....
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 55555555433 3444 33333222 12222 245555445567777776654 45554443
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=5.5e+02 Score=26.04 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----H
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNAD----GCVPDKTVYNT-LLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA----T 832 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~ 832 (918)
.+.....-|++.||.+.|++.+.+..+. |.+.|+..+.. +.-.|....-+.+-++..+.+.+.|...+.. +
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3444555688899999998877765543 77777654443 3333444444555566666666666555443 4
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHH
Q 043758 833 YEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 833 ~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
|..+- +....++.+|..++-...
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 44443 234567888877777664
No 454
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.44 E-value=4.5e+02 Score=25.07 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=54.4
Q ss_pred HHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCC---ChhhHH--HHHHHHHccCChhHHHHHHHHHHH
Q 043758 679 LFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMP---NLYLYN--DIFLLLCGVGRMDDAYDHFQMMKR 753 (918)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 753 (918)
..+.+..-.......+.++-.|.-...+.+|.+.|. .+.|+.| +...++ ..|......|+.++|++....+..
T Consensus 15 w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 15 WEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred hHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 344444444444455555555555555555555554 3344444 333332 344555777888888887776543
Q ss_pred cCCCCcHHhHHHHHH----HHHhcCCHHHHHHHHHHH
Q 043758 754 EGLRPNQVTFCILIN----GHIAAGEIDQAIGLFNQM 786 (918)
Q Consensus 754 ~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~~ 786 (918)
.=+.-|...+-.|.. -..+.|..++|++..+.=
T Consensus 93 eiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 93 EILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 222233322222221 134666666666665543
No 455
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.41 E-value=93 Score=17.89 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043758 76 GNIEDALRHFDRLISKNIVPIKLACVSIL 104 (918)
Q Consensus 76 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 104 (918)
|+.+.|..+|++++...+ -++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHH
Confidence 345666666766665543 2444554443
No 456
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.39 E-value=6.1e+02 Score=26.62 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=21.9
Q ss_pred HhcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHhhchhcHHHHHHHHHHH
Q 043758 73 VALGNIEDALRHFDRLISKN--IVPIKLACVSILRGLFAEEKFLEAFDYFIKI 123 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 123 (918)
..+|+++.|++.|.++..-- .....-.|..++.+-...|++......-.+.
T Consensus 161 ~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 161 LDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 55566666665555532210 0011223334444444445554444444433
No 457
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.63 E-value=5.5e+02 Score=25.84 Aligned_cols=147 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC
Q 043758 49 SALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGV 128 (918)
Q Consensus 49 ~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 128 (918)
.+.-.++..+++-.-|.-++.+ -..--+.+|.++|.++++ +.=..|.+......--...+.+.+++.
T Consensus 205 ~~A~~ALeIN~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALk-----------a~e~~yr~sqq~qh~~~~~da~~rRDt 271 (556)
T KOG3807|consen 205 KAAYQALEINNECATAYVLLAE--EEATTIVDAERLFKQALK-----------AGETIYRQSQQCQHQSPQHEAQLRRDT 271 (556)
T ss_pred HHHHHHHhcCchhhhHHHhhhh--hhhhhHHHHHHHHHHHHH-----------HHHHHHhhHHHHhhhccchhhhhhccc
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
..-...-..+.-...+.|+..+|.++++.+.+...+..-......++.++....-+..+..++-+..+-..+.+.....+
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
No 458
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.42 E-value=8.5e+02 Score=27.94 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 593 LGCMYLDRMLADGFVP---NVVLYTALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 593 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
+-..++.+|.++--.| ...+...++-.|....+++..+++.+.+..
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 3445667777652222 445666677778888888888888888864
No 459
>PRK12357 glutaminase; Reviewed
Probab=31.13 E-value=4.7e+02 Score=26.60 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=14.1
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHH
Q 043758 630 SRLENLMVTNQIEFDLIAYIALVSG 654 (918)
Q Consensus 630 ~~~~~~~~~~~~~p~~~~~~~ll~~ 654 (918)
..+++++ |.+|+...||++++.
T Consensus 90 ~~V~~~V---G~EPSG~~FNSi~~L 111 (326)
T PRK12357 90 SYVLERV---DVEPTGDAFNSIIRL 111 (326)
T ss_pred HHHHHHh---CCCCCCCCcchhhhh
Confidence 3445544 788888888877543
No 460
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=30.94 E-value=98 Score=23.99 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=25.3
Q ss_pred hhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHH
Q 043758 6 RGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSAL 65 (918)
Q Consensus 6 ~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~ 65 (918)
.|+.++|+.+++.+. +.|.| +..++.+|...|....|.
T Consensus 45 ~G~~~aa~~Ll~~L~-r~~~W---------------------f~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 45 SGNIKAAWTLLDTLV-RRDNW---------------------LEPFLDALRECGLGHLAR 82 (84)
T ss_pred CChHHHHHHHHHHHh-ccCCh---------------------HHHHHHHHHHcCCHHHHH
Confidence 477888888888876 55553 556677776666555443
No 461
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.78 E-value=7.3e+02 Score=26.66 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=28.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC
Q 043758 738 VGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAG 774 (918)
Q Consensus 738 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 774 (918)
.++.+.|+.++..|.+.|..|....-..++.++...|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4788999999999999888887766665555655555
No 462
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.38 E-value=90 Score=30.97 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCC
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCE 235 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 235 (918)
||.-|....+.||+++|+.++++..+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 456777777777777777777777776654
No 463
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.38 E-value=2.8e+02 Score=24.38 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=12.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcC
Q 043758 208 SLINGYCSNRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (918)
.++..+...++.-.|.++++++.+.+
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 34444444444455555555555443
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.19 E-value=1e+02 Score=30.62 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 764 CILINGHIAAGEIDQAIGLFNQMNADGCV 792 (918)
Q Consensus 764 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 792 (918)
+..|....+.||+++|+.+++++.+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44444444555555555555555444443
No 465
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.85 E-value=5.3e+02 Score=24.74 Aligned_cols=137 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred cchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 043758 691 RTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGH 770 (918)
Q Consensus 691 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 770 (918)
.+....++.|.+.-++..|-....++. .+.--...+--|.+..+.+--.++.+-....+++-+.....+++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIi------EPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKII------EPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhh------hhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HhcCCHHHHHHHHHHHHhC-C-----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 771 IAAGEIDQAIGLFNQMNAD-G-----------CVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHL 836 (918)
Q Consensus 771 ~~~g~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (918)
...||..+|+..++.-..- | -.|.+.....++..|. .+++++|.+++.++-+.|+.|..-.-+.+
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 466
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.73 E-value=7.7e+02 Score=26.63 Aligned_cols=130 Identities=8% Similarity=0.061 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHC--CCC-CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHH
Q 043758 506 AIYDAIIGHLCKEK-RILEAEDMFKRMLKA--GID-PDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTAL 581 (918)
Q Consensus 506 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 581 (918)
.++..|...|.... .+..+..++.+..+. +++ .+-.....++..+.-.+++..|.+++.--.+.- .+-...|..+
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~ 167 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRM 167 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHH
Confidence 46677777887776 788889999888874 211 011222345556667788888888754322211 2222333333
Q ss_pred HHHHH------hcCC---hhHHHHHHHHHHhCCCCCCHHHHH--------HHHHHHHHcCCHHHHHHHHHHHH
Q 043758 582 ISGLV------KKGM---VDLGCMYLDRMLADGFVPNVVLYT--------ALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 582 ~~~~~------~~g~---~~~a~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
+..+. ...+ +..+......+.+. ..+|..--. .=+.-|.-.|+...+...++++.
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ 239 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQ 239 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHH
Confidence 22221 2233 34444444555554 344443211 11223445666666666555544
No 467
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.42 E-value=2.9e+02 Score=21.61 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHH
Q 043758 257 GWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVD 328 (918)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 328 (918)
+.+++..+.+.|+- +......+-..-...|+.+.|++++..+. +| | ..|...++++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 34566666666632 33333333222235577888888888887 44 3 35667777777777655443
No 468
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.26 E-value=1.5e+02 Score=21.59 Aligned_cols=50 Identities=6% Similarity=0.087 Sum_probs=36.0
Q ss_pred CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcC
Q 043758 95 PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYK 145 (918)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 145 (918)
|....++.++...++..-.++++..+.++...| ..+..+|---++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 444577888888888888888888888888887 45666777666666553
No 469
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.98 E-value=3.4e+02 Score=22.30 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHh
Q 043758 543 FTTMINGYLQNRKPIEACQLFEKMKE 568 (918)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 568 (918)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777776665
No 470
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.51 E-value=3e+02 Score=21.52 Aligned_cols=65 Identities=9% Similarity=0.075 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 043758 187 AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKG 257 (918)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 257 (918)
+..+++.+.++|+- +......+-.+--..|+.+.|.+++..+. . .|+ .|...+.++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r--g~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q--KEG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c--CCc--HHHHHHHHHHHcCchhhh
Confidence 45566666666544 44444444433335567777777777766 4 232 456666666655554433
No 471
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.42 E-value=1.1e+03 Score=27.87 Aligned_cols=302 Identities=13% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhcc---------cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 043758 452 NTLIKCFYQVGFLEGANAIVELMQDT---------EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRIL 522 (918)
Q Consensus 452 ~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 522 (918)
+.+-..|...|+++.|.++-..-... ..+...+++..|.+++.++ ...+..+.--+....+.+
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHcC---------------------CChHHHHHHHHHHHhCCCCCCchhHHHH
Q 043758 523 EAEDMFKRMLKAGIDPDEVFFTTMINGYLQN---------------------RKPIEACQLFEKMKENSVQPGSYPYTAL 581 (918)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l 581 (918)
++..|-.=.=..++|...+-..++..+.-. ...+.....|...... ..+.....+.
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~--~~~~~nretv 510 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVL--HKDELNRETV 510 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHh--hHHhhhHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhccc
Q 043758 582 ISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITG 661 (918)
Q Consensus 582 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 661 (918)
...+...|+.+....+-.-+. -|..++..+.+.+.+++|++++.. +..|...--.+.+-.
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~----~~~~el~yk~ap~Li------- 570 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLN----QRNPELFYKYAPELI------- 570 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh----ccchhhHHHhhhHHH-------
Q ss_pred ccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCC----ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 043758 662 RKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNG----KKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCG 737 (918)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 737 (918)
.+...+++..+...+...+.......-.++..+ ....+...++-....-..-++..+|.++..|++
T Consensus 571 ----------~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~ 640 (911)
T KOG2034|consen 571 ----------THSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAK 640 (911)
T ss_pred ----------hcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhc
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCCCCHH
Q 043758 738 VGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAG------EIDQAIGLFNQMNADGCVPDKT 796 (918)
Q Consensus 738 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~~~~p~~~ 796 (918)
..+-+.-..+-..+...+. ..+-....++.|.+.+ .+..+..+|..+.+.-.+-|..
T Consensus 641 ~~~~~ll~~le~~~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d~d 703 (911)
T KOG2034|consen 641 HERDDLLLYLEIIKFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFDID 703 (911)
T ss_pred CCccchHHHHHHHhhcccc--ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcCHH
No 472
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.41 E-value=1.9e+02 Score=28.53 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=24.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHh
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKIC 124 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 124 (918)
.+.|+.+.|..+|+.++...+. ++.....+....-...+.-+|-.+|-++.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 5666677777777666665533 33333333333333334444444444433
No 473
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.38 E-value=4e+02 Score=29.75 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=52.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC--CCccHhhHHHHHHHHHhcCCHH------HHHHHHHHHhhCCCCCCcchHHHH
Q 043758 243 TLIHGFFKMGLFDKGWVLYSQMSDWG--FQPNMVTDLIMISNYCREGEVD------AALMLLNSKVSSNLAPSVHCYTVL 314 (918)
Q Consensus 243 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 314 (918)
+|+.+|..+|++-.+.++++.....+ -+.-...+|..+....+.|.++ .|.+.++... +.-|..+|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67788888888888888888876543 1222445666677777777653 3444444443 23466677777
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 043758 315 IDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~ 335 (918)
+++-..--.-.-...++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 666554333333333444433
No 474
>PRK09857 putative transposase; Provisional
Probab=26.95 E-value=3.2e+02 Score=27.52 Aligned_cols=58 Identities=10% Similarity=-0.017 Sum_probs=35.8
Q ss_pred HccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 043758 841 CANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPC 899 (918)
Q Consensus 841 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 899 (918)
.+.++.++..++++.+.+. .++..+...+++.-+.+.|.-+++.++..+|+..|+.+.
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3445555555555555444 244455556666667777776777777888887777643
No 475
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=26.87 E-value=1.8e+02 Score=21.60 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 043758 183 RTVEAESFAREMESQGFYVDKLMYTSLINGYCSN 216 (918)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 216 (918)
+.+.|.+.+..+...... ++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~dekR-sPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKR-SPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhc-ChHHHHHHHHHHHHc
Confidence 456666666666654333 666777776655443
No 476
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.23 E-value=1.5e+02 Score=17.91 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH
Q 043758 776 IDQAIGLFNQMNADGCVPDKTVY 798 (918)
Q Consensus 776 ~~~A~~~~~~~~~~~~~p~~~~~ 798 (918)
++.|..+|+..+. +.|++.+|
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHH
Confidence 3444555555444 23444443
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.19 E-value=1.7e+02 Score=21.40 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=23.8
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 573 PGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFL 621 (918)
Q Consensus 573 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 621 (918)
|....++.++..+++..-++.++.++.+....| ..+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344455555555555555555666666555555 234444444444333
No 478
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.04 E-value=4e+02 Score=22.38 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=26.1
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCC---------CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043758 772 AAGEIDQAIGLFNQMNAD--GCVP---------DKTVYNTLLKGLCQAGRLSHVFSVFYSM 821 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~--~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 821 (918)
..|.+++|..-+.+..+. .++| |..++..|..++...|++++++.--+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 445666665555544332 2333 3455666667777777777666544443
No 479
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.02 E-value=4.2e+02 Score=26.89 Aligned_cols=86 Identities=8% Similarity=-0.051 Sum_probs=45.2
Q ss_pred hHhcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 72 FVALGNIEDALRHFDRLISKN---IVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+.+..++..|...|...+... +..+.+.|+.-..+...-|++..|+.--....... +.+...|..=..++....++
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCLLELERF 169 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHHHHHHHH
Confidence 466666777777776655543 22334566666655566666666666655555443 22333333333444444444
Q ss_pred hHHHHHHHHH
Q 043758 149 DEVLEVVNIM 158 (918)
Q Consensus 149 ~~A~~~~~~~ 158 (918)
..|..+.+..
T Consensus 170 ~~a~nw~ee~ 179 (390)
T KOG0551|consen 170 AEAVNWCEEG 179 (390)
T ss_pred HHHHHHHhhh
Confidence 4444444443
No 480
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.00 E-value=4.5e+02 Score=28.87 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=9.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 043758 766 LINGHIAAGEIDQAIGLFNQM 786 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~ 786 (918)
++.-|.+.+++++|+.++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444444455555555444433
No 481
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.36 E-value=3.6e+02 Score=21.62 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 043758 710 QKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQM 750 (918)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 750 (918)
++-++++...+....+-....|.-.|++.|+.+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33444444333332233333344445555555555555544
No 482
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.17 E-value=1.1e+03 Score=27.29 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=36.2
Q ss_pred HHHcCCChhHHHHHHHHHHhcCCCCC---CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 043758 141 GLCYKGFLDEVLEVVNIMRKKKGLVP---ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNR 217 (918)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 217 (918)
-+.+.+.+++|+.+.+.... ..| -......++..+...|++++|-...-.|... +..-|--.+..+...+
T Consensus 365 Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 34455555666555554432 222 1233444555555566666666666666554 4445555444444444
Q ss_pred Ch
Q 043758 218 NM 219 (918)
Q Consensus 218 ~~ 219 (918)
+.
T Consensus 438 ~l 439 (846)
T KOG2066|consen 438 QL 439 (846)
T ss_pred cc
Confidence 43
No 483
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.07 E-value=7e+02 Score=25.65 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHcCCCCcHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 741 MDDAYDHFQMMKREGLRPNQV----TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC 806 (918)
Q Consensus 741 ~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 806 (918)
.+++..+++.++.. .|+.. -|-.+.......|.++.++.+|++++..|-.|-.+.-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45677777777763 45553 345556666777888888888888888888876666666666654
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.84 E-value=3.6e+02 Score=30.10 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=50.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcC--CCCcHHhHHHHHHHHHhcCCHHH--HHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 043758 730 DIFLLLCGVGRMDDAYDHFQMMKREG--LRPNQVTFCILINGHIAAGEIDQ--AIGLFNQMNAD-GCVPDKTVYNTLLKG 804 (918)
Q Consensus 730 ~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~~~~~-~~~p~~~~~~~l~~~ 804 (918)
++..+|...|++..+.++++...... -+.-...+|..|+...+.|.++- ..+-..+.++. .+.-|..||..|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 88899999999999999999887642 11122367888888888887642 22222222222 455577777776665
Q ss_pred HHH
Q 043758 805 LCQ 807 (918)
Q Consensus 805 ~~~ 807 (918)
-.+
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 485
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.76 E-value=1.5e+02 Score=28.11 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=39.3
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCc
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCL 865 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 865 (918)
....|+.+.|.+++++..+ +.| ...+|-.+...-.+.|+++.|.+.+++.++.+ |+|.
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld-p~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD-PEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC-cccc
Confidence 4456777777777777764 444 34467777776677777777777777777766 5553
No 486
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.72 E-value=1.4e+03 Score=28.15 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=50.3
Q ss_pred ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh----h
Q 043758 169 HPYKSLFYALCKNIRTVEAESFAREMESQGFYVD----KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY----T 240 (918)
Q Consensus 169 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~ 240 (918)
..|...++.+-+.+-.|++.++-...++. .+++ ..+++.+.+-....|.+-+|...+-+ .||.. .
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdc 1056 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHH
Confidence 45677788888888888888887776664 2222 23567777777777777777665533 34433 3
Q ss_pred HHHHHHHHHhcCChh
Q 043758 241 CNTLIHGFFKMGLFD 255 (918)
Q Consensus 241 ~~~ll~~~~~~g~~~ 255 (918)
...++..+...|.++
T Consensus 1057 LRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHhccchH
Confidence 444555555555544
No 487
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.56 E-value=4.6e+02 Score=26.48 Aligned_cols=114 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 043758 731 IFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGR 810 (918)
Q Consensus 731 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 810 (918)
++..+.+.++..+....++.+. ....-...+..+...|++..|++++.+..+ -...+..+-..---..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred hhHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHccCChhhHHHHHHH
Q 043758 811 LSHVFSVFYSMHKRGFV-----PKKATYEHLLECFCANCLSIPAFNMFKE 855 (918)
Q Consensus 811 ~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 855 (918)
+++-...++++.+..+. -|+..|..+..+|.-.|+...+..-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 488
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.51 E-value=3.3e+02 Score=27.82 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=48.7
Q ss_pred HcCC-hhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 807 QAGR-LSHVFSVFYSMHKRGFVPKKA----TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 807 ~~g~-~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
..|- -++...+++.+.+ ..|+.. -|-+++....+.|.++.++.+|++++..|-.|--+....++.++-
T Consensus 114 ~eGcp~eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HcCCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4453 4577778888875 356554 466666777778888889999999888887777666667777655
No 489
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.50 E-value=7.5e+02 Score=27.43 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCC
Q 043758 828 PKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHV 862 (918)
Q Consensus 828 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 862 (918)
+.......++.+ ...++..+|...+..++..|.+
T Consensus 240 ~~~~~if~Li~a-l~~~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 240 PPQERLRGIAAA-LAQGDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred CcHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCC
Confidence 334445556665 4568899999999999887743
No 490
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.22 E-value=2.8e+02 Score=27.15 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=30.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043758 581 LISGLVKKGMVDLGCMYLDRMLAD----G-FVPNVVLYTALINHFLRAGEFEFASRLENLM 636 (918)
Q Consensus 581 l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 636 (918)
+..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+--++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444555666666666666665322 1 1233445555666666677766665554433
No 491
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.18 E-value=8.1e+02 Score=25.35 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCc----hhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCCHHH
Q 043758 543 FTTMINGYLQNRKPIEACQLFEKMKENSVQPGS----YPYTALISGLVKKGMVDLGCMYLDRMLAD-----G-FVPNVVL 612 (918)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~~ 612 (918)
.+.+..++.+.+.+...+.+..+.... ..|.. .....++..|.+.+++..+..+++.-+.. + .+|....
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL 183 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFL 183 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHH
Confidence 344555555666665544444444332 11221 22334455566666666655554432211 1 1121111
Q ss_pred HHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHh
Q 043758 613 YTALIN--HFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVC 656 (918)
Q Consensus 613 ~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 656 (918)
.-.+-. .|.-.++++.|..+|...+- .|....-...+.+|-
T Consensus 184 ~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~~hlEaYk 226 (422)
T KOG2582|consen 184 LYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSHIHLEAYK 226 (422)
T ss_pred HHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHHHHHHHHH
Confidence 111111 14456789999999998873 455444445555543
No 492
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.07 E-value=7.4e+02 Score=24.85 Aligned_cols=21 Identities=0% Similarity=0.048 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHcCCChHHHH
Q 043758 540 EVFFTTMINGYLQNRKPIEAC 560 (918)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~ 560 (918)
..+|..++.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 445777888888888776543
No 493
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.02 E-value=4.4e+02 Score=22.43 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHHHHHHHH
Q 043758 706 KGTVQKIVLKVKDIEFMPN-LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAAGEIDQAIGLF 783 (918)
Q Consensus 706 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~ 783 (918)
++++.+.|.....-.-.|. ...|-..++.+ +++..+|+.|.+.|+.-... .|......+...|++.+|.++|
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred H
Q 043758 784 N 784 (918)
Q Consensus 784 ~ 784 (918)
+
T Consensus 123 ~ 123 (125)
T smart00777 123 Q 123 (125)
T ss_pred H
No 494
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=23.91 E-value=3e+02 Score=29.25 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCCCHH--HHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 816 SVFYSMHKRGFVPKKA--TYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 816 ~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
++-.-+....+.|... ++...+..++|.+++..|..+.+++++.+
T Consensus 284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~ 330 (422)
T PF06957_consen 284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELN 330 (422)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT-
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Confidence 3333343334555444 56777788899999999999999999875
No 495
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=23.86 E-value=1.2e+03 Score=27.24 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=53.4
Q ss_pred cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHH---HhccCchHHHHHHHHHHHhCCCCCChhhHH
Q 043758 131 NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYA---LCKNIRTVEAESFAREMESQGFYVDKLMYT 207 (918)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (918)
+...+..||..+.+.|++++....-..|.+ -.+.+...|...+.. ....+...+++..|+.....-. ++..|.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~--~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~ 187 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSE--IAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWE 187 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHH--hcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHH
Confidence 445666777777777877776666666654 233444555444432 2233556666666666555422 444455
Q ss_pred HHHHHHhcC-------CChHHHHHHHHHHHh
Q 043758 208 SLINGYCSN-------RNMKMAMRLFFRMLK 231 (918)
Q Consensus 208 ~li~~~~~~-------g~~~~A~~~~~~m~~ 231 (918)
-.+...... ++++....+|.+...
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 444443322 345666666666654
No 496
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.81 E-value=4.3e+02 Score=23.95 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 043758 816 SVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEK 879 (918)
Q Consensus 816 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 879 (918)
.+-+.+.+.|++++..-. .++..+....+.-.|.++++.+.+.+...+..+.+.-+..+...|
T Consensus 12 ~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 12 QAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 497
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=23.73 E-value=1.1e+02 Score=30.14 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=21.7
Q ss_pred hhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHH
Q 043758 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFA 36 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~ 36 (918)
..++|+.+.|+.+|..+++-.|+..+++--+..+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f 159 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQF 159 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHH
Confidence 3456777777777777777777765555444433
No 498
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.63 E-value=6.7e+02 Score=26.67 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC--C-----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 275 TDLIMISNYCREGEVDAALMLLNSKVSS--N-----LAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 275 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+...|++.++-.||+..|.++++.+.-. + ..-.+.++-.+.-+|...+++.+|.+.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888899999999998866421 1 122345677788899999999999999988753
No 499
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.61 E-value=4.4e+02 Score=22.11 Aligned_cols=69 Identities=22% Similarity=0.096 Sum_probs=41.9
Q ss_pred CcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHH----HHHHHhhchhcHHHHHHH
Q 043758 44 DSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACV----SILRGLFAEEKFLEAFDY 119 (918)
Q Consensus 44 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~ 119 (918)
|...+..|-.++...|++++++.. .+.|+..|++=-+.+-. .-..|. .-..++...|+.++|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~s----------A~~aL~YFNRRGEL~qd-eGklWIaaVfsra~Al~~~Gr~~eA~~~ 122 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQS----------ADRALRYFNRRGELHQD-EGKLWIAAVFSRAVALEGLGRKEEALKE 122 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHH----------HHHHHHHHHHH--TTST-HHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHH----------HHHHHHHHhhccccccc-cchhHHHHHHHHHHHHHhcCChHHHHHH
Confidence 344566777888888888888886 36677777765554321 222343 233456667888999888
Q ss_pred HHHH
Q 043758 120 FIKI 123 (918)
Q Consensus 120 ~~~~ 123 (918)
|+..
T Consensus 123 fr~a 126 (144)
T PF12968_consen 123 FRMA 126 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 500
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=23.55 E-value=1.2e+02 Score=18.81 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=17.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHH
Q 043758 867 NCNWLLNILCQEKHFHEAQIVLD 889 (918)
Q Consensus 867 ~~~~l~~~~~~~g~~~~A~~~~~ 889 (918)
.+..++-.+...|++++|.+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 35667888888999999998844
Done!