Query 043758
Match_columns 918
No_of_seqs 559 out of 4624
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 13:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.4E-37 1.5E-41 350.8 37.8 151 179-337 64-229 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.6E-35 3E-39 331.8 44.8 524 109-805 65-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 99.9 3.7E-24 1.3E-28 228.9 44.4 221 107-335 9-230 (388)
4 4g26_A Pentatricopeptide repea 99.9 6.5E-27 2.2E-31 252.2 22.1 186 170-355 28-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 6.8E-24 2.3E-28 226.9 44.9 381 139-624 6-387 (388)
6 4g26_A Pentatricopeptide repea 99.9 9.6E-27 3.3E-31 251.0 22.3 216 395-623 7-223 (501)
7 1xi4_A Clathrin heavy chain; a 99.9 1.7E-18 5.7E-23 196.2 69.7 239 73-333 467-750 (1630)
8 2gw1_A Mitochondrial precursor 99.9 2.9E-20 9.9E-25 207.5 42.7 460 204-831 7-483 (514)
9 1xi4_A Clathrin heavy chain; a 99.9 2.4E-17 8.1E-22 186.9 64.4 231 390-658 997-1234(1630)
10 2gw1_A Mitochondrial precursor 99.9 2.2E-20 7.5E-25 208.5 39.7 437 65-604 9-478 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 1E-19 3.6E-24 199.0 38.0 201 96-302 25-240 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 1.7E-19 6E-24 197.2 35.9 344 490-890 12-405 (450)
13 3fp2_A TPR repeat-containing p 99.9 1.1E-18 3.9E-23 195.7 42.5 433 203-823 25-490 (537)
14 3fp2_A TPR repeat-containing p 99.9 3.3E-19 1.1E-23 200.1 36.0 440 238-866 25-497 (537)
15 3ieg_A DNAJ homolog subfamily 99.8 6.1E-17 2.1E-21 171.0 35.0 314 505-895 3-336 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.1E-16 3.9E-21 168.9 35.4 236 70-336 11-262 (359)
17 3hym_B Cell division cycle pro 99.8 1.2E-16 4.3E-21 166.3 28.9 294 502-882 19-322 (330)
18 2xm6_A Protein corresponding t 99.8 2E-14 7E-19 157.9 46.7 233 82-336 27-287 (490)
19 3hym_B Cell division cycle pro 99.8 5.1E-16 1.8E-20 161.6 31.3 282 63-353 23-314 (330)
20 2xm6_A Protein corresponding t 99.8 5E-14 1.7E-18 154.8 47.4 74 258-337 27-108 (490)
21 1fch_A Peroxisomal targeting s 99.7 3E-16 1E-20 166.3 26.4 257 69-333 71-355 (368)
22 2ooe_A Cleavage stimulation fa 99.7 3.9E-14 1.3E-18 157.5 44.2 122 73-197 23-159 (530)
23 2ooe_A Cleavage stimulation fa 99.7 2.9E-14 9.9E-19 158.5 41.8 141 85-231 2-158 (530)
24 1b89_A Protein (clathrin heavy 99.7 3.5E-16 1.2E-20 159.3 21.1 224 72-337 13-236 (449)
25 4g1t_A Interferon-induced prot 99.7 8E-15 2.7E-19 161.1 33.7 394 410-897 48-462 (472)
26 1b89_A Protein (clathrin heavy 99.7 2.8E-16 9.7E-21 160.0 19.9 283 179-596 14-303 (449)
27 1fch_A Peroxisomal targeting s 99.7 3.7E-16 1.3E-20 165.5 21.9 258 73-336 36-313 (368)
28 4eqf_A PEX5-related protein; a 99.7 7E-16 2.4E-20 163.0 23.0 258 69-333 72-352 (365)
29 3cv0_A Peroxisome targeting si 99.7 3E-15 1E-19 155.6 26.0 256 72-334 31-312 (327)
30 3mkr_A Coatomer subunit epsilo 99.7 2.6E-15 8.8E-20 151.1 23.5 250 73-337 10-264 (291)
31 4g1t_A Interferon-induced prot 99.7 3.7E-14 1.2E-18 155.8 33.6 373 44-535 50-460 (472)
32 4eqf_A PEX5-related protein; a 99.7 1.5E-15 5E-20 160.6 21.5 265 96-366 64-350 (365)
33 3cv0_A Peroxisome targeting si 99.7 5.9E-15 2E-19 153.3 22.3 266 96-368 20-311 (327)
34 3mkr_A Coatomer subunit epsilo 99.6 1.2E-14 4.1E-19 146.2 22.0 169 704-888 115-288 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.6 6E-16 2.1E-20 170.2 11.0 152 723-879 125-286 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.6 2.9E-16 9.8E-21 172.7 7.4 119 168-286 127-249 (1134)
37 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.4E-18 132.4 19.5 197 96-299 4-211 (217)
38 3e4b_A ALGK; tetratricopeptide 99.6 6.6E-13 2.3E-17 143.1 26.1 245 73-336 14-279 (452)
39 3e4b_A ALGK; tetratricopeptide 99.6 2E-12 6.9E-17 139.3 29.7 219 102-335 8-244 (452)
40 2h6f_A Protein farnesyltransfe 99.6 2.8E-13 9.6E-18 140.8 22.0 250 61-319 96-364 (382)
41 3uq3_A Heat shock protein STI1 99.5 2.7E-13 9.2E-18 135.1 20.7 218 69-301 12-235 (258)
42 2pl2_A Hypothetical conserved 99.5 2.8E-13 9.5E-18 130.0 18.7 201 129-336 2-213 (217)
43 3uq3_A Heat shock protein STI1 99.5 4.3E-13 1.5E-17 133.6 20.5 227 97-337 5-236 (258)
44 3u4t_A TPR repeat-containing p 99.5 1.5E-12 5E-17 130.9 23.1 229 68-303 9-251 (272)
45 3u4t_A TPR repeat-containing p 99.5 2.4E-12 8.3E-17 129.3 23.9 239 97-344 3-255 (272)
46 1xnf_A Lipoprotein NLPI; TPR, 99.5 9E-13 3.1E-17 132.7 19.6 249 72-331 15-269 (275)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.7E-12 5.9E-17 130.7 19.7 252 3-296 15-269 (275)
48 2h6f_A Protein farnesyltransfe 99.5 4.4E-12 1.5E-16 131.7 22.5 240 97-346 97-355 (382)
49 1ouv_A Conserved hypothetical 99.5 3.5E-11 1.2E-15 120.7 28.2 224 96-338 5-252 (273)
50 1ouv_A Conserved hypothetical 99.5 2.8E-11 9.6E-16 121.3 27.4 223 62-303 6-252 (273)
51 2q7f_A YRRB protein; TPR, prot 99.5 1.5E-12 5.1E-17 128.2 17.5 201 96-302 22-222 (243)
52 2ho1_A Type 4 fimbrial biogene 99.4 7.7E-12 2.6E-16 123.9 22.3 93 206-300 144-236 (252)
53 2ho1_A Type 4 fimbrial biogene 99.4 1.2E-11 3.9E-16 122.6 23.4 199 65-268 40-239 (252)
54 2vq2_A PILW, putative fimbrial 99.4 1.1E-11 3.8E-16 120.3 22.8 201 97-302 8-211 (225)
55 2vq2_A PILW, putative fimbrial 99.4 1.6E-11 5.6E-16 119.1 22.8 200 132-336 8-210 (225)
56 4e6h_A MRNA 3'-END-processing 99.4 8.6E-09 2.9E-13 114.5 46.2 148 414-585 435-584 (679)
57 2q7f_A YRRB protein; TPR, prot 99.4 5.3E-12 1.8E-16 124.3 18.2 200 73-279 34-233 (243)
58 3sf4_A G-protein-signaling mod 99.4 1.2E-11 4.1E-16 132.7 18.8 303 502-881 6-363 (406)
59 4e6h_A MRNA 3'-END-processing 99.4 1.3E-08 4.3E-13 113.1 42.1 96 740-838 485-582 (679)
60 4a1s_A PINS, partner of inscut 99.4 9.4E-12 3.2E-16 133.7 16.9 269 68-337 54-372 (411)
61 4a1s_A PINS, partner of inscut 99.3 1.8E-11 6.2E-16 131.5 18.4 199 697-895 133-373 (411)
62 2ond_A Cleavage stimulation fa 99.3 1.5E-10 5.2E-15 118.0 24.3 217 79-302 33-270 (308)
63 3sf4_A G-protein-signaling mod 99.3 1.1E-11 3.7E-16 133.1 16.5 270 66-336 13-335 (406)
64 3ro2_A PINS homolog, G-protein 99.3 1.5E-11 5.2E-16 128.0 16.9 268 69-337 12-332 (338)
65 4abn_A Tetratricopeptide repea 99.3 2.1E-11 7.2E-16 132.2 18.3 216 111-334 82-318 (474)
66 3ro2_A PINS homolog, G-protein 99.3 4E-11 1.4E-15 124.7 19.8 273 545-895 10-333 (338)
67 3vtx_A MAMA; tetratricopeptide 99.3 1.1E-10 3.7E-15 108.9 20.6 167 724-895 4-171 (184)
68 2ond_A Cleavage stimulation fa 99.3 3.5E-10 1.2E-14 115.3 26.0 218 114-337 33-270 (308)
69 3ulq_A Response regulator aspa 99.3 1.1E-10 3.6E-15 123.8 21.8 301 515-895 22-369 (383)
70 3vtx_A MAMA; tetratricopeptide 99.3 1.3E-10 4.6E-15 108.2 19.6 166 167-336 4-169 (184)
71 3nf1_A KLC 1, kinesin light ch 99.3 2.5E-11 8.5E-16 124.7 15.4 246 575-894 27-307 (311)
72 4abn_A Tetratricopeptide repea 99.3 8.3E-11 2.9E-15 127.6 18.5 218 75-299 81-318 (474)
73 3ulq_A Response regulator aspa 99.3 3E-10 1E-14 120.3 21.6 232 103-336 109-367 (383)
74 3nf1_A KLC 1, kinesin light ch 99.2 2.2E-11 7.5E-16 125.1 11.4 239 97-336 27-306 (311)
75 1hz4_A MALT regulatory protein 99.2 4.4E-09 1.5E-13 110.9 25.7 268 69-336 21-321 (373)
76 3q15_A PSP28, response regulat 99.2 3.2E-09 1.1E-13 112.0 24.4 315 502-894 7-365 (378)
77 3as5_A MAMA; tetratricopeptide 99.2 1E-09 3.6E-14 102.3 17.5 167 725-895 8-174 (186)
78 4gyw_A UDP-N-acetylglucosamine 99.2 5.1E-10 1.7E-14 126.0 17.5 164 724-894 8-174 (723)
79 1hz4_A MALT regulatory protein 99.1 1.5E-08 5E-13 106.9 27.9 91 548-638 22-121 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.1 6.5E-10 2.2E-14 125.1 17.5 166 60-230 7-172 (723)
81 3edt_B KLC 2, kinesin light ch 99.1 4.7E-10 1.6E-14 113.2 15.0 165 57-231 13-197 (283)
82 3as5_A MAMA; tetratricopeptide 99.1 3E-09 1E-13 99.2 17.6 161 172-336 12-172 (186)
83 4i17_A Hypothetical protein; T 99.1 3.2E-09 1.1E-13 102.8 18.2 190 693-895 10-210 (228)
84 3q15_A PSP28, response regulat 99.1 2.9E-09 1E-13 112.3 19.0 232 102-336 106-364 (378)
85 4i17_A Hypothetical protein; T 99.1 7.8E-09 2.7E-13 100.1 19.1 195 96-303 6-210 (228)
86 3edt_B KLC 2, kinesin light ch 99.0 1.9E-09 6.7E-14 108.6 15.0 170 725-894 43-281 (283)
87 3dra_A Protein farnesyltransfe 99.0 1.6E-07 5.5E-12 93.1 24.5 246 61-313 32-298 (306)
88 3mv2_B Coatomer subunit epsilo 98.9 8.6E-08 2.9E-12 93.6 20.0 240 73-337 24-282 (310)
89 1qqe_A Vesicular transport pro 98.9 1.9E-08 6.7E-13 101.3 15.6 159 73-231 48-227 (292)
90 3qky_A Outer membrane assembly 98.9 5.9E-08 2E-12 96.1 18.2 178 67-267 20-224 (261)
91 1qqe_A Vesicular transport pro 98.9 3.4E-08 1.2E-12 99.5 16.6 54 107-160 47-105 (292)
92 2fo7_A Synthetic consensus TPR 98.9 4.9E-08 1.7E-12 85.1 15.6 130 763-895 4-133 (136)
93 3mv2_B Coatomer subunit epsilo 98.9 3.9E-07 1.3E-11 89.0 22.7 59 730-788 105-164 (310)
94 3urz_A Uncharacterized protein 98.9 2.6E-08 8.9E-13 94.4 14.2 87 72-160 14-116 (208)
95 3qky_A Outer membrane assembly 98.9 5.2E-08 1.8E-12 96.5 16.7 167 46-232 16-224 (261)
96 2fo7_A Synthetic consensus TPR 98.8 9.4E-08 3.2E-12 83.2 15.6 128 206-336 4-131 (136)
97 3urz_A Uncharacterized protein 98.8 5.5E-08 1.9E-12 92.1 14.8 180 98-302 5-186 (208)
98 3rjv_A Putative SEL1 repeat pr 98.8 1.8E-07 6.2E-12 88.7 18.3 176 80-268 4-198 (212)
99 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.1E-07 7.2E-12 89.5 19.0 60 835-895 152-214 (225)
100 4ga2_A E3 SUMO-protein ligase 98.8 1.6E-08 5.6E-13 89.7 10.1 142 732-880 4-149 (150)
101 3dra_A Protein farnesyltransfe 98.8 1.3E-06 4.4E-11 86.6 24.4 249 6-278 29-298 (306)
102 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.5E-07 8.7E-12 88.9 18.8 176 69-268 11-214 (225)
103 2uy1_A Cleavage stimulation fa 98.8 8.3E-06 2.9E-10 88.0 32.0 125 414-567 287-411 (493)
104 2pzi_A Probable serine/threoni 98.8 7E-08 2.4E-12 109.6 16.2 174 143-323 402-583 (681)
105 2uy1_A Cleavage stimulation fa 98.8 1.5E-05 5E-10 86.0 32.8 77 740-822 335-411 (493)
106 2r5s_A Uncharacterized protein 98.7 9.3E-08 3.2E-12 87.8 13.4 163 170-336 8-172 (176)
107 2pzi_A Probable serine/threoni 98.7 8.2E-08 2.8E-12 109.1 15.7 174 108-288 402-583 (681)
108 4ga2_A E3 SUMO-protein ligase 98.7 6E-08 2E-12 86.0 11.5 124 104-231 4-128 (150)
109 2r5s_A Uncharacterized protein 98.7 5.9E-08 2E-12 89.1 11.8 162 99-265 8-171 (176)
110 3qou_A Protein YBBN; thioredox 98.7 1.3E-07 4.6E-12 94.6 15.1 163 96-265 116-282 (287)
111 3qou_A Protein YBBN; thioredox 98.7 1.9E-07 6.7E-12 93.4 15.8 167 165-336 114-283 (287)
112 3rjv_A Putative SEL1 repeat pr 98.7 9.5E-07 3.2E-11 83.7 19.6 176 708-897 4-200 (212)
113 3q7a_A Farnesyltransferase alp 98.7 1.7E-06 6E-11 86.4 22.1 188 60-253 52-257 (349)
114 2vsy_A XCC0866; transferase, g 98.7 2E-07 6.7E-12 104.3 15.8 154 75-233 2-158 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.6 8.4E-07 2.9E-11 90.0 18.2 129 4-160 2-143 (307)
116 2ifu_A Gamma-SNAP; membrane fu 98.6 4E-07 1.4E-11 92.4 15.6 95 205-300 118-222 (307)
117 2vsy_A XCC0866; transferase, g 98.6 5.6E-07 1.9E-11 100.6 16.1 164 703-872 2-169 (568)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.3E-06 4.5E-11 83.1 16.3 125 727-857 8-148 (213)
119 3gyz_A Chaperone protein IPGC; 98.5 8.4E-07 2.9E-11 78.0 12.9 98 795-895 36-134 (151)
120 3u3w_A Transcriptional activat 98.5 4.5E-06 1.5E-10 84.0 20.2 164 730-893 80-265 (293)
121 4f3v_A ESX-1 secretion system 98.5 5.2E-07 1.8E-11 86.9 12.2 209 74-302 18-237 (282)
122 4gco_A Protein STI-1; structur 98.5 1.1E-06 3.9E-11 74.8 12.6 107 763-872 16-122 (126)
123 4gco_A Protein STI-1; structur 98.5 9.9E-07 3.4E-11 75.1 11.2 90 69-160 20-109 (126)
124 3gyz_A Chaperone protein IPGC; 98.5 7.9E-07 2.7E-11 78.1 10.5 90 69-160 43-132 (151)
125 2qfc_A PLCR protein; TPR, HTH, 98.5 1.2E-05 4.3E-10 80.7 20.8 168 726-893 76-265 (293)
126 3q7a_A Farnesyltransferase alp 98.4 4E-05 1.4E-09 76.6 23.2 191 6-219 50-258 (349)
127 1a17_A Serine/threonine protei 98.4 3.5E-06 1.2E-10 76.3 14.5 129 762-893 15-145 (166)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.4 8.4E-06 2.9E-10 77.5 17.6 123 208-336 11-149 (213)
129 4f3v_A ESX-1 secretion system 98.4 1.5E-06 5.2E-11 83.7 12.1 131 205-338 104-238 (282)
130 2e2e_A Formate-dependent nitri 98.4 1.9E-06 6.5E-11 79.1 12.2 85 74-160 56-143 (177)
131 2c2l_A CHIP, carboxy terminus 98.4 1.4E-06 4.7E-11 86.9 11.8 94 99-195 6-99 (281)
132 1na0_A Designed protein CTPR3; 98.4 4.9E-06 1.7E-10 70.8 13.6 113 762-877 11-123 (125)
133 3u3w_A Transcriptional activat 98.4 2.9E-05 9.8E-10 78.0 20.9 162 175-336 82-265 (293)
134 2lni_A Stress-induced-phosphop 98.4 4.5E-06 1.5E-10 72.1 12.9 96 725-822 16-111 (133)
135 2vyi_A SGTA protein; chaperone 98.4 4.8E-06 1.6E-10 71.6 12.9 115 763-880 15-129 (131)
136 2vgx_A Chaperone SYCD; alterna 98.4 1.1E-06 3.9E-11 77.4 8.9 95 762-859 23-118 (148)
137 3dss_A Geranylgeranyl transfer 98.3 0.00015 5.3E-09 72.1 24.8 171 73-249 40-238 (331)
138 1a17_A Serine/threonine protei 98.3 8.3E-06 2.8E-10 73.7 14.8 129 204-335 14-144 (166)
139 2c2l_A CHIP, carboxy terminus 98.3 1.9E-06 6.4E-11 85.8 11.1 95 64-160 6-100 (281)
140 1p5q_A FKBP52, FK506-binding p 98.3 4.8E-06 1.6E-10 85.3 14.2 150 739-892 127-292 (336)
141 2vgx_A Chaperone SYCD; alterna 98.3 3.7E-06 1.3E-10 74.0 11.0 90 69-160 28-117 (148)
142 1na0_A Designed protein CTPR3; 98.3 1.3E-05 4.4E-10 68.1 14.2 99 203-303 9-107 (125)
143 2lni_A Stress-induced-phosphop 98.3 1E-05 3.5E-10 69.7 13.3 116 203-321 16-131 (133)
144 2e2e_A Formate-dependent nitri 98.3 5.3E-06 1.8E-10 76.1 11.9 122 179-303 21-145 (177)
145 3gw4_A Uncharacterized protein 98.3 4.8E-06 1.7E-10 78.4 11.8 121 701-822 3-134 (203)
146 3dss_A Geranylgeranyl transfer 98.3 0.0002 6.9E-09 71.3 23.7 182 78-267 90-304 (331)
147 2qfc_A PLCR protein; TPR, HTH, 98.3 3.2E-05 1.1E-09 77.7 18.3 131 100-230 78-223 (293)
148 2vyi_A SGTA protein; chaperone 98.3 1.2E-05 4.3E-10 68.9 13.3 119 203-324 12-130 (131)
149 2xcb_A PCRH, regulatory protei 98.2 8.6E-06 2.9E-10 71.2 11.6 97 762-860 20-116 (142)
150 3upv_A Heat shock protein STI1 98.2 9.8E-06 3.3E-10 69.1 11.2 96 797-894 6-101 (126)
151 2fbn_A 70 kDa peptidylprolyl i 98.2 1.3E-06 4.5E-11 81.9 6.0 157 737-896 16-188 (198)
152 2xcb_A PCRH, regulatory protei 98.2 9E-06 3.1E-10 71.1 10.6 90 69-160 25-114 (142)
153 2kck_A TPR repeat; tetratricop 98.2 9.5E-06 3.3E-10 67.3 10.3 96 798-895 9-107 (112)
154 1elw_A TPR1-domain of HOP; HOP 98.2 3.8E-05 1.3E-09 64.3 14.2 94 764-859 8-101 (118)
155 3gw4_A Uncharacterized protein 98.2 1.5E-05 5.1E-10 75.0 12.6 156 482-638 4-175 (203)
156 1p5q_A FKBP52, FK506-binding p 98.1 2.1E-05 7.2E-10 80.5 14.0 131 202-336 146-293 (336)
157 3sz7_A HSC70 cochaperone (SGT) 98.1 1.9E-05 6.5E-10 71.1 12.1 91 68-160 17-107 (164)
158 2fbn_A 70 kDa peptidylprolyl i 98.1 2.3E-06 7.9E-11 80.2 6.1 132 203-336 38-185 (198)
159 3sz7_A HSC70 cochaperone (SGT) 98.1 7.5E-05 2.6E-09 67.1 15.7 104 762-869 13-117 (164)
160 3q49_B STIP1 homology and U bo 98.1 2.5E-05 8.4E-10 67.8 12.0 99 759-859 8-106 (137)
161 4gcn_A Protein STI-1; structur 98.1 1.6E-05 5.5E-10 67.7 10.2 92 68-160 14-111 (127)
162 1hxi_A PEX5, peroxisome target 98.1 1.3E-05 4.4E-10 67.5 9.4 95 798-895 20-115 (121)
163 4gcn_A Protein STI-1; structur 98.1 2.2E-05 7.4E-10 66.9 10.4 62 98-160 9-70 (127)
164 3upv_A Heat shock protein STI1 98.1 2.6E-05 8.9E-10 66.4 11.0 89 70-160 12-100 (126)
165 2dba_A Smooth muscle cell asso 98.1 6.3E-05 2.2E-09 66.2 13.7 97 724-823 27-127 (148)
166 2kck_A TPR repeat; tetratricop 98.0 5.7E-05 1.9E-09 62.5 12.5 88 71-160 15-105 (112)
167 1elw_A TPR1-domain of HOP; HOP 98.0 8.7E-05 3E-09 62.0 13.7 99 203-303 4-102 (118)
168 1hxi_A PEX5, peroxisome target 98.0 1.6E-05 5.5E-10 66.9 8.7 86 73-160 28-113 (121)
169 2hr2_A Hypothetical protein; a 98.0 4.3E-05 1.5E-09 66.0 10.0 62 832-894 59-131 (159)
170 3q49_B STIP1 homology and U bo 98.0 7E-05 2.4E-09 64.8 11.8 100 722-823 6-105 (137)
171 1zu2_A Mitochondrial import re 98.0 5.8E-05 2E-09 65.0 10.7 112 2-141 11-133 (158)
172 1elr_A TPR2A-domain of HOP; HO 97.9 0.00012 4E-09 62.6 12.8 109 726-837 5-119 (131)
173 4b4t_Q 26S proteasome regulato 97.9 0.00033 1.1E-08 75.0 19.1 165 135-299 58-242 (434)
174 2dba_A Smooth muscle cell asso 97.9 0.00017 5.8E-09 63.3 13.8 98 202-302 27-128 (148)
175 1elr_A TPR2A-domain of HOP; HO 97.9 3.4E-05 1.2E-09 66.1 8.9 90 70-160 12-107 (131)
176 3k9i_A BH0479 protein; putativ 97.9 1.1E-05 3.7E-10 67.7 5.4 86 74-160 2-89 (117)
177 4b4t_Q 26S proteasome regulato 97.9 5.9E-05 2E-09 81.0 12.6 211 2-230 13-243 (434)
178 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00011 3.7E-09 78.8 14.1 128 762-891 270-412 (457)
179 2xev_A YBGF; tetratricopeptide 97.9 5E-05 1.7E-09 64.9 9.4 92 765-859 7-105 (129)
180 3ro3_A PINS homolog, G-protein 97.8 5.2E-05 1.8E-09 68.0 9.3 98 797-894 51-158 (164)
181 1dce_A Protein (RAB geranylger 97.8 0.00028 9.5E-09 77.4 16.5 135 76-215 43-190 (567)
182 1wao_1 Serine/threonine protei 97.8 2.7E-05 9.1E-10 84.0 7.8 118 71-192 15-134 (477)
183 3k9i_A BH0479 protein; putativ 97.8 2E-05 6.8E-10 66.1 5.2 86 773-859 3-90 (117)
184 2if4_A ATFKBP42; FKBP-like, al 97.8 4.7E-05 1.6E-09 77.9 9.1 150 725-896 179-330 (338)
185 1wao_1 Serine/threonine protei 97.8 5.2E-05 1.8E-09 81.7 9.7 115 770-889 16-134 (477)
186 2hr2_A Hypothetical protein; a 97.8 0.00014 4.7E-09 62.8 10.3 89 71-160 20-130 (159)
187 2xev_A YBGF; tetratricopeptide 97.8 0.00036 1.2E-08 59.4 13.3 90 209-301 8-104 (129)
188 1ihg_A Cyclophilin 40; ppiase 97.7 0.00015 5.2E-09 74.9 11.8 91 794-887 272-363 (370)
189 3rkv_A Putative peptidylprolyl 97.7 9.6E-05 3.3E-09 66.3 9.1 103 761-865 12-131 (162)
190 1dce_A Protein (RAB geranylger 97.7 0.00093 3.2E-08 73.2 17.5 161 52-217 53-240 (567)
191 3rkv_A Putative peptidylprolyl 97.7 0.00019 6.6E-09 64.2 9.8 63 97-160 63-125 (162)
192 3n71_A Histone lysine methyltr 97.7 0.0002 6.8E-09 76.3 11.4 29 865-893 435-463 (490)
193 3ro3_A PINS homolog, G-protein 97.6 0.00029 9.8E-09 63.0 11.0 134 505-638 9-157 (164)
194 1zu2_A Mitochondrial import re 97.6 8.8E-05 3E-09 63.9 6.7 99 73-176 13-132 (158)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00045 1.5E-08 74.0 13.9 130 202-335 267-413 (457)
196 3n71_A Histone lysine methyltr 97.6 6.9E-05 2.4E-09 79.9 7.2 137 4-160 320-463 (490)
197 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00022 7.5E-09 72.9 10.2 129 204-336 180-327 (338)
198 2kat_A Uncharacterized protein 97.6 0.00016 5.5E-09 60.2 7.2 80 79-160 2-81 (115)
199 1klx_A Cysteine rich protein B 97.5 0.00056 1.9E-08 58.9 10.2 110 775-895 10-127 (138)
200 1ihg_A Cyclophilin 40; ppiase 97.4 0.0011 3.9E-08 68.3 13.5 124 506-631 224-362 (370)
201 2l6j_A TPR repeat-containing p 97.4 0.00027 9.4E-09 58.2 6.8 87 796-884 5-97 (111)
202 1klx_A Cysteine rich protein B 97.4 0.0018 6.2E-08 55.6 12.0 50 181-233 74-127 (138)
203 2kat_A Uncharacterized protein 97.4 0.00068 2.3E-08 56.2 8.7 80 778-859 3-82 (115)
204 1na3_A Designed protein CTPR2; 97.3 0.001 3.5E-08 52.2 8.8 81 796-878 10-90 (91)
205 3ma5_A Tetratricopeptide repea 97.2 0.0012 4.1E-08 53.0 7.9 63 794-858 6-69 (100)
206 2l6j_A TPR repeat-containing p 97.1 0.0022 7.4E-08 52.6 9.4 62 726-788 5-66 (111)
207 3ma5_A Tetratricopeptide repea 97.1 0.00084 2.9E-08 53.9 6.2 64 96-160 6-69 (100)
208 3u64_A Protein TP_0956; tetrat 97.1 0.014 4.8E-07 55.5 15.0 82 148-232 179-269 (301)
209 3lvg_A Clathrin heavy chain 1; 96.9 1.4E-05 4.8E-10 80.4 -6.7 233 202-528 53-285 (624)
210 1na3_A Designed protein CTPR2; 96.9 0.0049 1.7E-07 48.1 9.3 61 205-266 11-71 (91)
211 3bee_A Putative YFRE protein; 96.9 0.0038 1.3E-07 48.7 8.1 70 827-897 3-75 (93)
212 3ly7_A Transcriptional activat 96.8 0.015 5.2E-07 57.9 13.4 72 202-277 276-347 (372)
213 3lvg_A Clathrin heavy chain 1; 96.6 0.0002 6.8E-09 72.3 -1.4 214 96-332 53-286 (624)
214 3qww_A SET and MYND domain-con 96.4 0.0078 2.7E-07 62.9 8.7 86 772-857 310-409 (433)
215 2kc7_A BFR218_protein; tetratr 96.3 0.006 2.1E-07 48.6 5.9 54 73-127 11-65 (99)
216 3qww_A SET and MYND domain-con 96.3 0.0044 1.5E-07 64.8 6.1 70 46-125 341-410 (433)
217 2kc7_A BFR218_protein; tetratr 96.3 0.0044 1.5E-07 49.4 4.9 54 769-823 9-63 (99)
218 3ly7_A Transcriptional activat 96.2 0.017 5.8E-07 57.6 9.5 72 96-172 276-347 (372)
219 3qwp_A SET and MYND domain-con 96.1 0.0052 1.8E-07 64.4 5.9 70 46-125 330-399 (429)
220 1pc2_A Mitochondria fission pr 96.1 0.019 6.6E-07 48.7 8.0 84 775-860 13-101 (152)
221 3qwp_A SET and MYND domain-con 96.1 0.023 7.8E-07 59.6 10.5 91 767-857 294-398 (429)
222 3bee_A Putative YFRE protein; 96.0 0.05 1.7E-06 42.3 9.6 64 63-127 7-73 (93)
223 1wy6_A Hypothetical protein ST 95.8 0.52 1.8E-05 38.3 14.3 148 727-897 7-157 (172)
224 3mkq_A Coatomer beta'-subunit; 95.7 0.24 8.3E-06 57.7 18.1 98 703-821 665-762 (814)
225 1qsa_A Protein (soluble lytic 95.6 1.3 4.6E-05 48.3 22.1 78 544-627 76-153 (618)
226 3u64_A Protein TP_0956; tetrat 95.2 0.54 1.8E-05 44.9 15.0 95 112-209 178-283 (301)
227 1nzn_A CGI-135 protein, fissio 95.2 0.074 2.5E-06 43.3 7.8 82 812-895 18-104 (126)
228 1wy6_A Hypothetical protein ST 95.2 1 3.6E-05 36.6 15.2 140 423-571 17-156 (172)
229 3mkq_B Coatomer subunit alpha; 95.1 1.3 4.6E-05 38.6 15.9 131 174-334 11-141 (177)
230 1pc2_A Mitochondria fission pr 95.1 0.11 3.8E-06 44.1 8.9 80 79-160 15-99 (152)
231 3mkq_A Coatomer beta'-subunit; 95.0 0.63 2.2E-05 54.1 18.8 154 107-300 609-763 (814)
232 2v5f_A Prolyl 4-hydroxylase su 94.8 0.14 4.6E-06 41.0 8.7 61 799-859 9-75 (104)
233 2v5f_A Prolyl 4-hydroxylase su 94.2 0.14 4.8E-06 40.9 7.4 65 96-160 4-74 (104)
234 3mkq_B Coatomer subunit alpha; 94.1 1.4 4.9E-05 38.4 13.7 102 212-334 14-115 (177)
235 4h7y_A Dual specificity protei 93.9 0.25 8.7E-06 41.2 8.2 100 759-860 12-124 (161)
236 4h7y_A Dual specificity protei 92.9 1.2 4.2E-05 37.2 10.6 60 587-647 72-131 (161)
237 1nzn_A CGI-135 protein, fissio 92.9 0.53 1.8E-05 38.4 8.4 67 793-860 33-104 (126)
238 4ady_A RPN2, 26S proteasome re 91.6 22 0.00077 40.5 46.9 153 482-638 386-552 (963)
239 2ff4_A Probable regulatory pro 91.5 0.25 8.7E-06 50.9 6.5 76 834-910 175-255 (388)
240 3o48_A Mitochondria fission 1 90.8 1.2 4.2E-05 36.3 8.3 68 827-895 37-108 (134)
241 1y8m_A FIS1; mitochondria, unk 90.5 2.6 8.8E-05 35.0 10.1 69 792-860 36-107 (144)
242 4gns_B Protein CSD3, chitin bi 90.4 2.2 7.6E-05 47.5 12.9 49 842-891 349-397 (754)
243 3ffl_A Anaphase-promoting comp 90.1 1.5 5.1E-05 37.6 8.7 70 719-788 12-91 (167)
244 2ff4_A Probable regulatory pro 89.3 7.3 0.00025 39.9 15.2 98 799-897 175-283 (388)
245 4b4t_P 26S proteasome regulato 87.4 21 0.00071 37.3 17.4 190 704-893 30-246 (445)
246 3ffl_A Anaphase-promoting comp 87.2 0.94 3.2E-05 38.8 5.5 129 754-895 12-152 (167)
247 1y8m_A FIS1; mitochondria, unk 85.2 14 0.00048 30.7 11.3 71 758-830 37-110 (144)
248 4b4t_P 26S proteasome regulato 84.7 41 0.0014 35.1 20.2 267 554-854 30-319 (445)
249 4gns_B Protein CSD3, chitin bi 84.6 8.7 0.0003 42.8 13.1 127 173-300 253-398 (754)
250 1qsa_A Protein (soluble lytic 84.1 53 0.0018 35.9 34.7 51 512-565 388-438 (618)
251 3o48_A Mitochondria fission 1 83.1 13 0.00043 30.5 10.0 71 758-830 38-111 (134)
252 1v54_E Cytochrome C oxidase po 82.3 5 0.00017 30.7 6.8 48 776-823 26-73 (109)
253 1v54_E Cytochrome C oxidase po 82.1 14 0.00049 28.3 9.1 46 744-789 29-74 (109)
254 2wpv_A GET4, UPF0363 protein Y 80.2 45 0.0016 32.4 17.7 123 53-191 21-157 (312)
255 2y69_E Cytochrome C oxidase su 80.0 8.6 0.0003 31.3 7.8 59 80-139 71-129 (152)
256 3lpz_A GET4 (YOR164C homolog); 79.5 49 0.0017 32.4 23.3 82 793-893 134-215 (336)
257 4fhn_B Nucleoporin NUP120; pro 78.8 20 0.0007 43.0 14.6 129 206-336 902-1049(1139)
258 2p58_C Putative type III secre 77.2 9.6 0.00033 29.0 6.8 78 739-824 21-98 (116)
259 4fhn_B Nucleoporin NUP120; pro 76.8 77 0.0026 38.0 18.8 49 414-464 939-987 (1139)
260 2uwj_G Type III export protein 74.6 9 0.00031 29.1 6.1 78 739-824 20-97 (115)
261 2y69_E Cytochrome C oxidase su 74.0 28 0.00096 28.4 9.1 60 778-838 71-130 (152)
262 1zbp_A Hypothetical protein VP 70.2 7.7 0.00026 36.4 6.2 55 804-859 6-60 (273)
263 4b4t_R RPN7, 26S proteasome re 69.8 20 0.00069 37.2 10.2 98 726-823 132-236 (429)
264 2p58_C Putative type III secre 69.2 27 0.00091 26.7 7.5 49 73-127 51-99 (116)
265 4ady_A RPN2, 26S proteasome re 67.2 1.8E+02 0.0062 33.4 48.8 113 522-639 471-589 (963)
266 3mv2_A Coatomer subunit alpha; 67.0 95 0.0033 30.1 17.1 71 810-895 185-257 (325)
267 2wpv_A GET4, UPF0363 protein Y 65.8 1E+02 0.0035 30.0 21.9 139 736-893 64-216 (312)
268 3lpz_A GET4 (YOR164C homolog); 61.7 1.3E+02 0.0043 29.6 23.0 172 414-637 36-214 (336)
269 3ltm_A Alpha-REP4; protein eng 59.0 1E+02 0.0035 27.7 15.1 49 236-288 124-172 (211)
270 2uwj_G Type III export protein 57.6 52 0.0018 25.1 7.2 75 184-268 22-98 (115)
271 4b4t_R RPN7, 26S proteasome re 55.2 79 0.0027 32.7 11.4 61 577-637 133-195 (429)
272 3esl_A Checkpoint serine/threo 54.5 74 0.0025 28.4 9.1 57 588-644 92-149 (202)
273 3esl_A Checkpoint serine/threo 52.7 35 0.0012 30.4 6.8 53 808-860 92-145 (202)
274 1zbp_A Hypothetical protein VP 52.4 1.6E+02 0.0053 27.8 14.6 54 178-232 7-60 (273)
275 3ltm_A Alpha-REP4; protein eng 50.4 1.4E+02 0.0048 26.7 17.5 155 722-893 30-184 (211)
276 4a1g_A Mitotic checkpoint seri 46.9 1.3E+02 0.0045 25.4 9.1 53 592-644 82-135 (152)
277 3txn_A 26S proteasome regulato 39.2 3.2E+02 0.011 27.6 24.8 166 414-601 20-207 (394)
278 1wdy_A 2-5A-dependent ribonucl 39.1 2.3E+02 0.0079 26.5 11.6 49 249-297 190-240 (285)
279 2wvi_A Mitotic checkpoint seri 38.6 58 0.002 27.9 5.8 49 812-860 77-126 (164)
280 2d2s_A Exocyst complex compone 38.2 1.6E+02 0.0053 27.2 9.2 90 730-822 23-118 (235)
281 2wvi_A Mitotic checkpoint seri 37.8 1.9E+02 0.0066 24.7 9.0 54 592-645 77-131 (164)
282 4a1g_A Mitotic checkpoint seri 34.9 1.3E+02 0.0045 25.4 7.3 45 116-160 84-129 (152)
283 3mkr_B Coatomer subunit alpha; 34.0 1.4E+02 0.0049 28.9 8.3 133 732-896 109-249 (320)
284 1k1a_A B-cell lymphoma 3-encod 33.7 2.7E+02 0.0093 25.2 11.3 18 143-160 17-34 (241)
285 2nsz_A Programmed cell death p 32.6 1.6E+02 0.0054 24.0 7.5 64 729-793 11-76 (129)
286 3eiq_C Programmed cell death p 32.5 3.8E+02 0.013 26.6 11.8 66 728-794 220-287 (358)
287 2pby_A Glutaminase; secsg, rik 32.5 3.3E+02 0.011 26.2 10.4 21 631-654 83-103 (308)
288 1wdy_A 2-5A-dependent ribonucl 31.2 3.3E+02 0.011 25.4 11.3 22 285-306 191-212 (285)
289 2fe3_A Peroxide operon regulat 30.4 1.6E+02 0.0054 24.6 7.4 37 773-809 34-70 (145)
290 2ijq_A Hypothetical protein; s 30.0 1.7E+02 0.0059 24.9 7.3 53 108-160 43-103 (161)
291 3eiq_C Programmed cell death p 30.0 4.2E+02 0.014 26.3 12.3 73 763-836 220-294 (358)
292 3ltj_A Alpharep-4; protein eng 29.9 2.8E+02 0.0097 24.3 17.7 79 202-288 89-167 (201)
293 3kea_A K1L; tropism, ANK repea 29.6 3.6E+02 0.012 25.4 13.7 64 277-345 162-225 (285)
294 2qx5_A Nucleoporin NIC96; mRNA 28.3 6.2E+02 0.021 27.7 17.2 27 868-894 459-485 (661)
295 2zu6_B Programmed cell death p 28.2 3.9E+02 0.013 25.8 10.5 246 312-603 7-269 (307)
296 1mzb_A Ferric uptake regulatio 27.2 1.7E+02 0.0057 24.1 6.9 33 777-809 35-67 (136)
297 2ion_A PDCD4, programmed cell 26.6 1.4E+02 0.0046 25.3 6.2 65 728-793 12-78 (152)
298 2xig_A Ferric uptake regulatio 26.3 1.9E+02 0.0065 24.3 7.2 39 771-809 37-75 (150)
299 3kae_A CDC27, possible protein 25.7 3.2E+02 0.011 23.5 8.0 28 414-441 115-142 (242)
300 2keb_A DNA polymerase subunit 25.4 2.3E+02 0.0077 21.6 7.1 27 783-809 32-58 (101)
301 2w57_A Ferric uptake regulatio 24.6 1.8E+02 0.0061 24.4 6.7 34 776-809 33-66 (150)
302 2xig_A Ferric uptake regulatio 24.5 2.4E+02 0.0084 23.6 7.5 60 193-253 17-76 (150)
303 2nsz_A Programmed cell death p 24.2 1.6E+02 0.0054 24.0 6.0 18 177-194 16-33 (129)
304 3eyy_A Putative iron uptake re 23.9 1.6E+02 0.0054 24.6 6.1 34 811-844 33-66 (145)
305 2qx5_A Nucleoporin NIC96; mRNA 23.5 7.5E+02 0.026 27.0 20.8 43 417-460 156-198 (661)
306 2ijq_A Hypothetical protein; s 23.5 2.4E+02 0.0084 24.0 7.1 53 73-125 43-103 (161)
307 2fe3_A Peroxide operon regulat 22.7 2.9E+02 0.01 22.9 7.6 58 194-252 13-70 (145)
308 3mv2_A Coatomer subunit alpha; 22.6 5.4E+02 0.018 25.0 12.2 61 826-899 181-241 (325)
309 1bpo_A Protein (clathrin); cla 21.8 4.9E+02 0.017 26.8 9.9 135 49-194 345-482 (494)
310 4aez_C MAD3, mitotic spindle c 21.5 4E+02 0.014 24.2 8.4 90 702-793 93-183 (223)
311 3bu8_A Telomeric repeat-bindin 20.9 2.9E+02 0.0099 24.8 7.0 49 486-534 88-143 (235)
312 2f6m_A Suppressor protein STP2 20.6 1.6E+02 0.0055 20.4 4.3 47 99-146 4-50 (65)
313 3eu9_A Huntingtin-interacting 20.4 4.5E+02 0.015 23.5 9.5 212 82-305 22-239 (240)
314 3e3v_A Regulatory protein RECX 20.2 4.3E+02 0.015 22.9 10.0 49 708-757 51-99 (177)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-37 Score=350.76 Aligned_cols=151 Identities=9% Similarity=0.000 Sum_probs=102.6
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGW 258 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 258 (918)
...|.+..+...+..+.. ++...|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.+|...|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 344555555555554432 37778888888888888888888888888754 567788888888888888888888
Q ss_pred HHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------CCCCCcchHHHHHHHHHhcCC
Q 043758 259 VLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS---------------NLAPSVHCYTVLIDALYKHNR 323 (918)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~ 323 (918)
.+|+.+... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 888887643 677888888888888888888888888853211 122346677777777777777
Q ss_pred hhHHHHHHHHHHhC
Q 043758 324 LMEVDELYKKMLAN 337 (918)
Q Consensus 324 ~~~a~~~~~~~~~~ 337 (918)
+++|.++|++|.+.
T Consensus 216 ~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 216 FDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-35 Score=331.83 Aligned_cols=524 Identities=11% Similarity=-0.015 Sum_probs=365.6
Q ss_pred chhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHH
Q 043758 109 AEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAE 188 (918)
Q Consensus 109 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 188 (918)
..|.+..+...+..+. .++...|+.++..|.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|++++|.
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 3444444444443321 35667778888888888888888888888765 3456677777777788888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 189 SFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
.+|+.+... +++..+++.++.+|.+.|++++|+.+|+++. |+.. ...++...++ ...+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~ 195 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGG 195 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSS
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccc
Confidence 888776543 4477778888888888888888888777422 2210 0001111111 1123
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHH--HH-HHHHHhCCCCCChhh
Q 043758 269 FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVD--EL-YKKMLANRVAPDHLL 345 (918)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~ 345 (918)
.+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 45567788888888888888888888888887754 234445555554443332222211 11 444444444444555
Q ss_pred HHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHc
Q 043758 346 SFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCK 425 (918)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (918)
|..++..+.+.|+++.|..++..+.+. +.+..+|+.++..|.+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-------------------------------------~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL-------------------------------------EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG-------------------------------------GGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC-------------------------------------CchHHHHHHHHHHHHH
Confidence 666666777777776666666544432 1334788999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCH
Q 043758 426 GGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSV 505 (918)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 505 (918)
.|++++|+.+|+++.+.+ +.+..++..++.++...| ++++|..+++++.+.. +.+.
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG----------------------EKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHHC-TTSH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHhhC-cccH
Confidence 999999999999998765 457778888888887665 5566667777776553 4478
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHH
Q 043758 506 AIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGL 585 (918)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (918)
.+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 899999999999999999999999998754 4568899999999999999999999999998874 45778899999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhccccccc
Q 043758 586 VKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKW 665 (918)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 665 (918)
.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------- 504 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL-------------------------- 504 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------------------
Confidence 99999999999999998764 557889999999999999999999999988641
Q ss_pred ccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChhH
Q 043758 666 LDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPN--LYLYNDIFLLLCGVGRMDD 743 (918)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 743 (918)
..+.+..|+ ..+|..++.+|.+.|++++
T Consensus 505 --------------------------------------------------~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 505 --------------------------------------------------VKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp --------------------------------------------------HHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------------------------------------hhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 011234555 6788888888888888888
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 043758 744 AYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGL 805 (918)
Q Consensus 744 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 805 (918)
|...|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+. .| +...+..+..+|
T Consensus 535 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 535 AIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 888888888754 336678888888888888888888888888874 34 445555555443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.7e-24 Score=228.93 Aligned_cols=221 Identities=14% Similarity=0.042 Sum_probs=98.6
Q ss_pred hhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHH
Q 043758 107 LFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVE 186 (918)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 186 (918)
+.+.|++++|+..+.++.+.. |.+...+..+...+...|++++|...++...+ ..+.+...|..+..++.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHH
Confidence 344444444444444444332 22333333344444444444444444444443 112233344444444444444444
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 187 AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS-YTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
|...|+++.+..+. +..+|..+..++...|++++|+..|+++.+. .|+. ..+..+...+...|++++|.+.|+++.
T Consensus 86 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444443221 3334444455555555555555555554443 2222 233344444444455555555555544
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
+.. +.+..++..+...|...|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 2234444445555555555555555555544433 2233444445555555555555555554443
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=6.5e-27 Score=252.24 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=134.9
Q ss_pred cHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHhcCCCCChhh
Q 043758 170 PYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRN---------MKMAMRLFFRMLKTGCEPDSYT 240 (918)
Q Consensus 170 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~~~~p~~~~ 240 (918)
.++.++.+|++.|++++|.++|++|.+.|+.||..+||+||.+|.+.+. ++.|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566666777777777777777777777777777777777776665443 5667777777777777777777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 241 CNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 241 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCC
Q 043758 321 HNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPE 355 (918)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 355 (918)
.|+.++|.++|++|.+.|..|+..||+.++..+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777776665443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=6.8e-24 Score=226.88 Aligned_cols=381 Identities=13% Similarity=0.090 Sum_probs=289.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC
Q 043758 139 IDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRN 218 (918)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 218 (918)
...+.+.|++++|++.++.+.+. .+.+...+..+...+...|++++|...++...+..+. +..+|..+..+|...|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 45567789999999999888762 2334455666777788889999999999888876443 77889999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043758 219 MKMAMRLFFRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLN 297 (918)
Q Consensus 219 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 297 (918)
+++|+..|+++.+. .|+ ..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998876 344 4578888888999999999999999988764 4445677778888888899999999998
Q ss_pred HHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCC
Q 043758 298 SKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGID 377 (918)
Q Consensus 298 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (918)
.+.... +.+..+|+.+...+...|++++|...|+++.+. .|+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~---------------------------------- 202 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNF---------------------------------- 202 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTC----------------------------------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc----------------------------------
Confidence 888765 445678888888999999999999998888763 2221
Q ss_pred hhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 043758 378 PLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKC 457 (918)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 457 (918)
..+|..+...+...|++++|+..|++..... +.+..++..+..+
T Consensus 203 -----------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 203 -----------------------------------LDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp -----------------------------------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHH
Confidence 1456677778888888888888888887653 2335566666666
Q ss_pred HHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043758 458 FYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGID 537 (918)
Q Consensus 458 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 537 (918)
+... |++++|...++++.+.++. +..++..+..++.+.|++++|.+.|+++.+.. +
T Consensus 247 ~~~~----------------------g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 302 (388)
T 1w3b_A 247 YYEQ----------------------GLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-P 302 (388)
T ss_dssp HHHT----------------------TCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-T
T ss_pred HHHc----------------------CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 6544 4556666667777665433 56778888888888888888888888888764 5
Q ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 538 PDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALI 617 (918)
Q Consensus 538 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 617 (918)
.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...|..+.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg 380 (388)
T 1w3b_A 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 380 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHH
Confidence 677788888888888888888888888887753 3445677888888888888888888888888753 34566677676
Q ss_pred HHHHHcC
Q 043758 618 NHFLRAG 624 (918)
Q Consensus 618 ~~~~~~g 624 (918)
..+...|
T Consensus 381 ~~~~~~~ 387 (388)
T 1w3b_A 381 NTLKEMQ 387 (388)
T ss_dssp HHHHHTC
T ss_pred HHHHHcc
Confidence 6665554
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=9.6e-27 Score=250.96 Aligned_cols=216 Identities=18% Similarity=0.111 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCCCCch-HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHH
Q 043758 395 QEIELLLRKIVKSDPKLAN-VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVEL 473 (918)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 473 (918)
..++.+.+.+........+ ..++.+|++|++.|++++|+.+|++|.+.|+.||..+|+++|.+|++.+....
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------- 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------- 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------
Confidence 3445555566555544433 46889999999999999999999999999999999999999999988765432
Q ss_pred hhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcC
Q 043758 474 MQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQN 553 (918)
Q Consensus 474 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (918)
..+.+.++.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 80 ------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 80 ------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp ------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred ------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 23456678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 554 RKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRA 623 (918)
Q Consensus 554 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (918)
|+.++|.++|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999888754
No 7
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=1.7e-18 Score=196.21 Aligned_cols=239 Identities=11% Similarity=0.064 Sum_probs=149.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+..+..-|+.+|-++- +..-.+.++++.|+++.+...-++ .|..|| |..++..+.+. +.+.|.
T Consensus 467 v~~~d~~lAl~iY~~a~---------~~~Kvi~~l~~~gq~~ki~~Y~~~---~~~~pD---y~~ll~~~~~~-~P~~~~ 530 (1630)
T 1xi4_A 467 VKSVDPTLALSVYLRAN---------VPNKVIQCFAETGQVQKIVLYAKK---VGYTPD---WIFLLRNVMRI-SPDQGQ 530 (1630)
T ss_pred HHhcChHHHHHHHHhcC---------CcHHHHHHHHHhCCHHHHHHHHhc---cCCCcc---HHHHHHHHhhc-ChHHHH
Confidence 44445555666655332 233667778888888888877443 455555 56677777644 578888
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCC-----------------------------Ch
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYV-----------------------------DK 203 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------------------~~ 203 (918)
++...+.+ . .|.....+.++..+...+.+.++..++-+..+.+-+- +.
T Consensus 531 ~fa~~L~~-~--~~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fth 607 (1630)
T 1xi4_A 531 QFAQMLVQ-D--EEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTH 607 (1630)
T ss_pred HHHHHHhc-C--CCCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCcccc
Confidence 88887776 2 2234556677888888888888888887777654221 12
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhc--CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHH---
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKT--GCE-PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDL--- 277 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--- 277 (918)
.-+..+...|-++|-++.|++.|..+... -+. .....-..++..+++ =..+.+.++++.|...++.-+.....
T Consensus 608 yd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva 686 (1630)
T 1xi4_A 608 YDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVA 686 (1630)
T ss_pred ccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHH
Confidence 23455677888899999999988765431 011 111122234444444 46688999999998765444433333
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 278 ----------IMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 278 ----------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
.++..+-+.+.++.-.-.+..+.. ...|..+....|.+.++.|++.+++++.++
T Consensus 687 ~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~~everi~re 750 (1630)
T 1xi4_A 687 SKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQIKEVERICRE 750 (1630)
T ss_pred HHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCchhhhHHhcc
Confidence 334444444444444333344433 346778888999999999998888877654
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.9e-20 Score=207.54 Aligned_cols=460 Identities=11% Similarity=0.007 Sum_probs=261.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNY 283 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (918)
..+..+...+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...++++.+.+ +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345566666777777777777777777653 566677777777777777777777777776654 44556677777777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHH
Q 043758 284 CREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHAL 363 (918)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 363 (918)
...|++++|...|+.+...+ +++......++..+........+.+.+..+...+..|+......-.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------- 155 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ------- 155 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc-------
Confidence 77777777777777776655 3344444444444444333333333332222211111111110000000000
Q ss_pred HHHHHHHhcCCCCCh-hhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHc---cCChHHHHHHHHHH
Q 043758 364 MLLCEFAKIGCGIDP-LARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCK---GGKYEKAYVCLFQL 439 (918)
Q Consensus 364 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 439 (918)
...+.. ........+...... .....+.+...+......+.. .|++++|+..|+++
T Consensus 156 ---------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 156 ---------ENLPSVTSMASFFGIFKPELTF-----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCC-----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------cCCchhHHHHHHHhhcCHHHHH-----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 000000 000000000000000 000001112334444444443 78888888888877
Q ss_pred HH-----CCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043758 440 VN-----FGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGH 514 (918)
Q Consensus 440 ~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (918)
.+ ....|+.... .+.+..++..+...
T Consensus 216 ~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKL-------------------------------------------------KEKLAISLEHTGIF 246 (514)
T ss_dssp HHHHHHHTTTSTTCHHH-------------------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHhhhhhccCcccccc-------------------------------------------------ChHHHHHHHHHHHH
Confidence 76 3212221100 01134566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHH
Q 043758 515 LCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLG 594 (918)
Q Consensus 515 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 594 (918)
+...|++++|...|+++.+.. |+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 778888888888888877764 336677777777888888888888888877653 33556677777777778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchh
Q 043758 595 CMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDS 674 (918)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 674 (918)
...++.+.+.. +.+..++..+..++...|++++|...++.+.+.
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------------------- 367 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK----------------------------------- 367 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------------------------
Confidence 88888777653 335567777777777777777777777776531
Q ss_pred hhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 043758 675 GKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE 754 (918)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 754 (918)
.+.+...+..+...+...|++++|...++++.+.
T Consensus 368 ----------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 368 ----------------------------------------------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp ----------------------------------------------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0223455666667777777777777777776553
Q ss_pred CCC-Cc----HHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 043758 755 GLR-PN----QVTFCILINGHIA---AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGF 826 (918)
Q Consensus 755 ~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 826 (918)
... ++ ...+..+..++.. .|++++|...++++.+.. +.+..++..+..+|...|++++|...+++..+ +
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~ 478 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--L 478 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h
Confidence 111 11 2256666677777 777777777777776642 22456667777777777777777777777765 3
Q ss_pred CCCHH
Q 043758 827 VPKKA 831 (918)
Q Consensus 827 ~p~~~ 831 (918)
.|+..
T Consensus 479 ~~~~~ 483 (514)
T 2gw1_A 479 ARTME 483 (514)
T ss_dssp CSSHH
T ss_pred ccccH
Confidence 45444
No 9
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=2.4e-17 Score=186.94 Aligned_cols=231 Identities=18% Similarity=0.163 Sum_probs=153.4
Q ss_pred CCChHHHHHHHHHHHHhcCC--CCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhH
Q 043758 390 TGDLCQEIELLLRKIVKSDP--KLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGA 467 (918)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 467 (918)
..+...++.++++++.-.+. ..+...-+.++.+..+. +..+..++...+.. .....+...+...|.+++|
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHH
Confidence 44445666666666653221 01223334444444444 33444444443321 1133455667777888888
Q ss_pred HHHHHHhhcc-----cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 043758 468 NAIVELMQDT-----EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVF 542 (918)
Q Consensus 468 ~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 542 (918)
..+|+..... ..+...+++++|.++.++. -+..+|..+..++.+.|++++|++.|.+. .|...
T Consensus 1069 f~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~sa 1136 (1630)
T 1xi4_A 1069 FAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSS 1136 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHH
Confidence 8888776433 1112445666666666544 26788899999999999999999999664 46777
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043758 543 FTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLR 622 (918)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 622 (918)
|..++.+|.+.|++++|.+.|...++.. +++...+.++.+|++.+++++...+ .+ .++...|..+...|..
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHh
Confidence 8889999999999999999999888764 4444445688889999888854433 22 3466677789999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhh
Q 043758 623 AGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRR 658 (918)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 658 (918)
.|++++|..+|... ..|..+...+++.
T Consensus 1208 eg~YeeA~~~Y~kA---------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV---------SNFGRLASTLVHL 1234 (1630)
T ss_pred cCCHHHHHHHHHhh---------hHHHHHHHHHHHh
Confidence 99999999999985 3666666666654
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.2e-20 Score=208.51 Aligned_cols=437 Identities=9% Similarity=-0.025 Sum_probs=270.0
Q ss_pred HhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc
Q 043758 65 LLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY 144 (918)
Q Consensus 65 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (918)
+...+..+.+.|++++|+..|+.+++.+ |++.+|..++.++...|++++|+..++++.+.+ +.+..++..++.++..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3344555688899999999999999877 688899999999999999999999999999876 5567789999999999
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMR 224 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (918)
.|++++|+..|+.+.+ .+ +++......++..+........+.+.+..+...+..|+...++.................
T Consensus 86 ~g~~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSL-NG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TTCHHHHHHHHHHHHH-SS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HhhHHHHHHHHHHHHh-cC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999987 33 344455555555555444444444444333332222222211111111111111111111
Q ss_pred HHHHHHhcCCC--------CC-hhhHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCC--------CccHhhHHHH
Q 043758 225 LFFRMLKTGCE--------PD-SYTCNTLIHGFFK---MGLFDKGWVLYSQMSD-----WGF--------QPNMVTDLIM 279 (918)
Q Consensus 225 ~~~~m~~~~~~--------p~-~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 279 (918)
+...+...... |+ ...+......+.. .|++++|..+++++.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11111111101 22 2333333333443 7888888888888776 311 2234566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccH
Q 043758 280 ISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTEL 359 (918)
Q Consensus 280 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 359 (918)
...+...|++++|...|+.+...+ |+..++..+..++...|++++|...|+++.... |+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------- 302 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SN----------------- 302 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TT-----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cC-----------------
Confidence 777888888888888888877665 336677777778888888888888887776532 11
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHH
Q 043758 360 QHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQL 439 (918)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 439 (918)
+..++..+...+...|++++|+..|+.+
T Consensus 303 ----------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 303 ----------------------------------------------------NSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp ----------------------------------------------------CTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred ----------------------------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1144566677777788888888888877
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043758 440 VNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEK 519 (918)
Q Consensus 440 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 519 (918)
.+.. +.+...+..+...+. ..|++++|...++++.+..+. +..++..+...+...|
T Consensus 331 ~~~~-~~~~~~~~~l~~~~~----------------------~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 331 KELD-PENIFPYIQLACLAY----------------------RENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKN 386 (514)
T ss_dssp HHTC-SSCSHHHHHHHHHTT----------------------TTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTT
T ss_pred HHhC-hhhHHHHHHHHHHHH----------------------HcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCC
Confidence 7653 223344444444433 345556666666666655332 5566777777777777
Q ss_pred CHHHHHHHHHHHHHCCC-CCc----HHHHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCCh
Q 043758 520 RILEAEDMFKRMLKAGI-DPD----EVFFTTMINGYLQ---NRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMV 591 (918)
Q Consensus 520 ~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 591 (918)
++++|...++++.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCH
Confidence 77777777777765320 111 2366667777777 777777777777776653 23445666677777777777
Q ss_pred hHHHHHHHHHHhC
Q 043758 592 DLGCMYLDRMLAD 604 (918)
Q Consensus 592 ~~a~~~~~~~~~~ 604 (918)
++|...|+...+.
T Consensus 466 ~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 466 DEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777665
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1e-19 Score=198.98 Aligned_cols=201 Identities=13% Similarity=0.010 Sum_probs=113.5
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
+..++..++..+.+.|++++|+..|+++.+.. +.+..++..++.++...|++++|++.|+.+.+ . .+.+...+..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ-L-KMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c-CCCcHHHHHHHH
Confidence 34455555555555555555655555555443 33445555555555555555555555555554 1 122344455555
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHhcCCChHHHHHHHHHHHhcCCCCChhh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDK---LMYTSL------------INGYCSNRNMKMAMRLFFRMLKTGCEPDSYT 240 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 240 (918)
.+|.+.|++++|...|+++.+..+. +. ..+..+ ...+...|++++|+..|+++.+.. +.+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 5555555555555555555554222 22 333333 333666667777777776666542 234456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 241 CNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 241 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
+..+..++...|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+.+...
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666667777766666666543 345566666666666666666666666666554
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.7e-19 Score=197.20 Aligned_cols=344 Identities=10% Similarity=0.022 Sum_probs=269.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043758 490 LDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN 569 (918)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 569 (918)
...+....... +.+...+..++..+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|+..|+++.+.
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33444444432 3377889999999999999999999999999864 567889999999999999999999999999987
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHH
Q 043758 570 SVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNV---VLYTAL------------INHFLRAGEFEFASRLEN 634 (918)
Q Consensus 570 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~ 634 (918)
+ +.+...+..+..+|...|++++|..+|+.+.+.. +.+. ..+..+ ...+.+.|++++|+..++
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 3456788899999999999999999999999863 3334 555555 444889999999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHH
Q 043758 635 LMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVL 714 (918)
Q Consensus 635 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 714 (918)
.+.+... .+..++..+ ...+...|++++|...++
T Consensus 168 ~~~~~~~-~~~~~~~~l---------------------------------------------~~~~~~~g~~~~A~~~~~ 201 (450)
T 2y4t_A 168 KILEVCV-WDAELRELR---------------------------------------------AECFIKEGEPRKAISDLK 201 (450)
T ss_dssp HHHHHCT-TCHHHHHHH---------------------------------------------HHHHHHTTCGGGGHHHHH
T ss_pred HHHHhCC-CChHHHHHH---------------------------------------------HHHHHHCCCHHHHHHHHH
Confidence 9986321 123333333 344555699999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHH------------HHHHHhcCCHHHHHH
Q 043758 715 KVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCIL------------INGHIAAGEIDQAIG 781 (918)
Q Consensus 715 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l------------i~~~~~~g~~~~A~~ 781 (918)
.+.+.. +.+..+|..++.+|...|++++|+..|+++... .|+.. .+..+ ..+|...|++++|+.
T Consensus 202 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 278 (450)
T 2y4t_A 202 AASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278 (450)
T ss_dssp HHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887653 457889999999999999999999999999875 45433 34333 788999999999999
Q ss_pred HHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHH
Q 043758 782 LFNQMNADGCVPD-----KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEM 856 (918)
Q Consensus 782 ~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 856 (918)
.|+++.+. .|+ ...|..+..++.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|...++++
T Consensus 279 ~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 279 KYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999884 344 457888999999999999999999998863 2346788999999999999999999999999
Q ss_pred HhCCCCCCcccHHHHHHH------------HHhcC-----CHHHHHHHHHH
Q 043758 857 IVHDHVPCLSNCNWLLNI------------LCQEK-----HFHEAQIVLDV 890 (918)
Q Consensus 857 ~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 890 (918)
++.. |.++.++..++.+ |...| +.+++.+.+++
T Consensus 356 l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 356 QEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9876 7778888888844 44445 56677777776
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.1e-18 Score=195.75 Aligned_cols=433 Identities=11% Similarity=0.027 Sum_probs=284.6
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (918)
...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|.+.++++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777777888888888888888887763 3355677777888888888888888888887765 4566777778888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHHHhhCCCC
Q 043758 283 YCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR------VAPDHLLSFILLKNCPEG 356 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~ 356 (918)
|...|++++|...|+.+ ... |+ .....+..+...+...+|...++++.... ..|+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~-------------- 163 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS-------------- 163 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCC--------------
T ss_pred HHHcCCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch--------------
Confidence 88888888888888633 221 22 22223445555566677777777775431 1111
Q ss_pred ccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHH
Q 043758 357 TELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCL 436 (918)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (918)
...+..+....+.+.+...+
T Consensus 164 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 164 ------------------------------------------------------------NTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp ------------------------------------------------------------HHHHHHHHHTSCHHHHHHTS
T ss_pred ------------------------------------------------------------HhHHHHHHHhcChHHHHHHH
Confidence 12222233344444433332
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhc-----CChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCH------
Q 043758 437 FQLVNFGYRPLVFTCNTLIKCFYQV-----GFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSV------ 505 (918)
Q Consensus 437 ~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 505 (918)
.... ..+ ..+..+..++... +.+..+ .+++++|..+++++.+..+. +.
T Consensus 184 ~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~~a---------------~~~~~~A~~~~~~~l~~~p~-~~~~~~~~ 242 (537)
T 3fp2_A 184 NTSS----NYD-TAYALLSDALQRLYSATDEGYLVA---------------NDLLTKSTDMYHSLLSANTV-DDPLRENA 242 (537)
T ss_dssp CCCC----SSC-SSHHHHHHHHHHHHTCSHHHHHHH---------------HHHHHHHHHHHHHHHC--CC-CHHHHHHH
T ss_pred hhcc----ccc-cHHHHHHHHHHHHHHhhhhhhHHH---------------HHHHHHHHHHHHHHHHHCCC-cchhhHHH
Confidence 2211 111 1122222222211 111111 23677888888888876443 32
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 043758 506 -AIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISG 584 (918)
Q Consensus 506 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (918)
.++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHH
Confidence 34666777788889999999999998886 4567778888888888999999999999888764 3456778888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccc
Q 043758 585 LVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKK 664 (918)
Q Consensus 585 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 664 (918)
+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------- 373 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK------------------------- 373 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------
Confidence 888899999998888888764 335667888888888888888888888877631
Q ss_pred cccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 043758 665 WLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDA 744 (918)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 744 (918)
.+.+...+..+...+...|++++|
T Consensus 374 --------------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 374 --------------------------------------------------------FPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp --------------------------------------------------------CTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------------------------------------------CCCChHHHHHHHHHHHHhCCHHHH
Confidence 123456777778888888888888
Q ss_pred HHHHHHHHHcCCC-C----cHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043758 745 YDHFQMMKREGLR-P----NQVTFCILINGHIAA----------GEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAG 809 (918)
Q Consensus 745 ~~~~~~m~~~~~~-p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 809 (918)
...|+++.+.... + ....+.....++... |++++|+..|+++.+.. +.+...+..+..+|...|
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 8888887664210 0 111233344566666 88888888888888752 235677888888888888
Q ss_pred ChhHHHHHHHHHHh
Q 043758 810 RLSHVFSVFYSMHK 823 (918)
Q Consensus 810 ~~~~A~~~~~~~~~ 823 (918)
++++|...+++..+
T Consensus 477 ~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 477 KIDEAIELFEDSAI 490 (537)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 88889888888876
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=3.3e-19 Score=200.10 Aligned_cols=440 Identities=11% Similarity=0.045 Sum_probs=309.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHH
Q 043758 238 SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDA 317 (918)
Q Consensus 238 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 317 (918)
...+..+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|.+.|+.+...+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3467778888999999999999999999875 5678899999999999999999999999998876 5677889999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHH
Q 043758 318 LYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEI 397 (918)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 397 (918)
+...|++++|...|+.+ . ..|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~--~~~~~~----------------------------------------------------- 126 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-S--LNGDFD----------------------------------------------------- 126 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-------------------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-h--cCCCCC-----------------------------------------------------
Confidence 99999999999999633 2 222211
Q ss_pred HHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCChhhHHHHHHHhh
Q 043758 398 ELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFG--YRPLVFTCNTLIKCFYQVGFLEGANAIVELMQ 475 (918)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 475 (918)
...+..+...+....|+..++.+.... ..+........+..+....+...+..
T Consensus 127 -------------------~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 181 (537)
T 3fp2_A 127 -------------------GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS------ 181 (537)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH------
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH------
Confidence 111122223334466777777765431 11111222333333433333322221
Q ss_pred cccCccccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH--------HhcCCHHHHHHHHHHHHHCCCCCc-------
Q 043758 476 DTEGNCKWGNLDSALDILDQMEVRGPKPSVA-IYDAIIGHL--------CKEKRILEAEDMFKRMLKAGIDPD------- 539 (918)
Q Consensus 476 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~------- 539 (918)
.+..... ..+... ....+...+ ...+++++|..+++++.+.. +.+
T Consensus 182 ----------------~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~ 242 (537)
T 3fp2_A 182 ----------------SVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENA 242 (537)
T ss_dssp ----------------TSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH
T ss_pred ----------------HHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHH
Confidence 1111111 111111 222222221 22357899999999998763 222
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 540 EVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINH 619 (918)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 619 (918)
..++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|..+++.+.+.. +.+..++..+..+
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHH
Confidence 234666677888899999999999999886 4557788888888999999999999999988764 4567888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHH
Q 043758 620 FLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSA 699 (918)
Q Consensus 620 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (918)
+...|++++|+..++++.+..
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~----------------------------------------------------------- 340 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLN----------------------------------------------------------- 340 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred HHhcCCHHHHHHHHHHHHHhC-----------------------------------------------------------
Confidence 999999999999988886410
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHH
Q 043758 700 VFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQA 779 (918)
Q Consensus 700 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 779 (918)
+.+...|..+..+|...|++++|...++++.+.. +.+...+..+..++...|++++|
T Consensus 341 ----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 341 ----------------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp ----------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 2245678888899999999999999999998863 33455788889999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 043758 780 IGLFNQMNADG-----CVPDKTVYNTLLKGLCQA----------GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANC 844 (918)
Q Consensus 780 ~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 844 (918)
...|+++.+.. .......+..+..++... |++++|...++++.+. .+.+...+..+..++.+.|
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhc
Confidence 99999987751 111223344556677777 9999999999999864 2346678888999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCcc
Q 043758 845 LSIPAFNMFKEMIVHDHVPCLS 866 (918)
Q Consensus 845 ~~~~A~~~~~~~~~~~~~~~~~ 866 (918)
++++|...++++.... |.+..
T Consensus 477 ~~~~A~~~~~~al~~~-~~~~~ 497 (537)
T 3fp2_A 477 KIDEAIELFEDSAILA-RTMDE 497 (537)
T ss_dssp CHHHHHHHHHHHHHHC---CHH
T ss_pred cHHHHHHHHHHHHHhC-CCcHH
Confidence 9999999999998875 44433
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=6.1e-17 Score=171.01 Aligned_cols=314 Identities=12% Similarity=0.076 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 043758 505 VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISG 584 (918)
Q Consensus 505 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (918)
+..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4455666666677777777777777766653 3445666666666667777777777777666542 2244556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhccc
Q 043758 585 LVKKGMVDLGCMYLDRMLADGFV---PNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITG 661 (918)
Q Consensus 585 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 661 (918)
+...|++++|...++.+.+.. + .+...+..+...+. +.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-------~~------------------------------- 121 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-------MQ------------------------------- 121 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-------HH-------------------------------
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-------HH-------------------------------
Confidence 666666666666666666542 1 12333333311000 00
Q ss_pred ccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 043758 662 RKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRM 741 (918)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 741 (918)
........+...|+++.|...++.+.+.. +.+...+..+..++...|++
T Consensus 122 ------------------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 122 ------------------------------RLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp ------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred ------------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCH
Confidence 00111223333455555555555554332 34566777777777778888
Q ss_pred hHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHHcC
Q 043758 742 DDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYN------------TLLKGLCQAG 809 (918)
Q Consensus 742 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~------------~l~~~~~~~g 809 (918)
++|...++++.+.. +.+...+..+...+...|++++|...|+++.+... .+...+. .+...+...|
T Consensus 171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888777642 33455677777777778888888888877776421 1223222 2255677788
Q ss_pred ChhHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 043758 810 RLSHVFSVFYSMHKRGFVPKKA-----TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEA 884 (918)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 884 (918)
++++|...++++.+. .|+.. .+..+..++.+.|++++|...++++.... |.++..+..++.+|...|++++|
T Consensus 249 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 249 RYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp CHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888877753 34322 23445667778888888888888887765 66777888888888888888888
Q ss_pred HHHHHHHHhCC
Q 043758 885 QIVLDVMHKRG 895 (918)
Q Consensus 885 ~~~~~~~~~~~ 895 (918)
.+.++++.+..
T Consensus 326 ~~~~~~a~~~~ 336 (359)
T 3ieg_A 326 IQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcC
Confidence 88888887765
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1.1e-16 Score=168.87 Aligned_cols=236 Identities=16% Similarity=0.097 Sum_probs=122.4
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 149 (918)
..+...|++++|...|+.+++.++. ++.++..++..+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChH
Confidence 3344555555555555555444322 34444455555555555555555555544443 223344444445555555555
Q ss_pred HHHHHHHHHHhcCCCCC----CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 043758 150 EVLEVVNIMRKKKGLVP----ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRL 225 (918)
Q Consensus 150 ~A~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 225 (918)
+|.+.|+.+.+ ..| +...+..+...+ . ...+..+...+...|++++|+..
T Consensus 89 ~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 89 EAEDDFKKVLK---SNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp HHHHHHHHHHT---SCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHh---cCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHHHHHHH
Confidence 55555555443 122 111111111000 0 01122234566677777777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 043758 226 FFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLA 305 (918)
Q Consensus 226 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 305 (918)
|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+...+.. +
T Consensus 143 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~ 219 (359)
T 3ieg_A 143 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-Q 219 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 77776653 2345566666667777777777777777776654 4456666677777777777777777777766543 2
Q ss_pred CCcchHH------------HHHHHHHhcCChhHHHHHHHHHHh
Q 043758 306 PSVHCYT------------VLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 306 ~~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
.+...+. .+...+...|++++|...|+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2222222 123445555555555555555544
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.2e-16 Score=166.31 Aligned_cols=294 Identities=10% Similarity=-0.076 Sum_probs=218.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHH
Q 043758 502 KPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTAL 581 (918)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 581 (918)
+.+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455667777888888899999999988888764 3455566667777888888888888888888753 3456777778
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcc
Q 043758 582 ISGLVKKG-MVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRIT 660 (918)
Q Consensus 582 ~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 660 (918)
...+...| ++++|...|+.+.+.. +.+...|..+..++...|++++|+..++++.+..
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------- 155 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-------------------- 155 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------------------
Confidence 88888888 8888888888888764 3456678888888888888888888888776421
Q ss_pred cccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 043758 661 GRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGR 740 (918)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 740 (918)
+.+...+..+...|...|+
T Consensus 156 -------------------------------------------------------------~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 156 -------------------------------------------------------------KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp -------------------------------------------------------------TTCSHHHHHHHHHHHHTTC
T ss_pred -------------------------------------------------------------cccHHHHHHHHHHHHHHhh
Confidence 2234556667778888888
Q ss_pred hhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCChh
Q 043758 741 MDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADG--------CVPDKTVYNTLLKGLCQAGRLS 812 (918)
Q Consensus 741 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~ 812 (918)
+++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+..+|...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888887742 3345577778888888888888888888877641 1223567888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH-HhcCCHH
Q 043758 813 HVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL-CQEKHFH 882 (918)
Q Consensus 813 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 882 (918)
+|...+++..+.. +.+...+..+..++.+.|++++|...++++.+.. |.++..+..++.++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8888888887632 3355677778888888888888888888888776 67778888888887 4555543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=2e-14 Score=157.93 Aligned_cols=233 Identities=15% Similarity=0.135 Sum_probs=139.2
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhhc----hhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc----CCChhHHHH
Q 043758 82 LRHFDRLISKNIVPIKLACVSILRGLFA----EEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY----KGFLDEVLE 153 (918)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 153 (918)
...+....+.+ ++.++..+...|.. .+++++|+.+|++..+.+ +...+..+...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 33444444443 45566666666665 667777777777766654 44566666666666 667777777
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhc----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCChHHHHHH
Q 043758 154 VVNIMRKKKGLVPALHPYKSLFYALCK----NIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS----NRNMKMAMRL 225 (918)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 225 (918)
+|++..+ .+ +...+..+...|.. .+++++|...|++..+.+ ++..+..|...|.. .+++++|+..
T Consensus 101 ~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 101 WYKKAAL-KG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777665 22 34455555555555 566677777777666653 45566666666655 5667777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHH
Q 043758 226 FFRMLKTGCEPDSYTCNTLIHGFFK----MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR----EGEVDAALMLLN 297 (918)
Q Consensus 226 ~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 297 (918)
|++..+.| +...+..+...+.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 77666543 44555556555555 566677777776666644 34455555555554 566666666666
Q ss_pred HHhhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 043758 298 SKVSSNLAPSVHCYTVLIDALYK----HNRLMEVDELYKKMLA 336 (918)
Q Consensus 298 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 336 (918)
...+.+ +...+..+...|.. .+++++|...|++..+
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 666543 33444555555555 5556666666655543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=5.1e-16 Score=161.62 Aligned_cols=282 Identities=10% Similarity=-0.066 Sum_probs=232.1
Q ss_pred hHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 043758 63 SALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGL 142 (918)
Q Consensus 63 ~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (918)
+........+...|++++|..+|+.+.+.++. +..++..++.++...|++++|+..++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 33334444457778888888889998887654 55677788899999999999999999999876 56778999999999
Q ss_pred HcCC-ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHH
Q 043758 143 CYKG-FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221 (918)
Q Consensus 143 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 221 (918)
...| ++++|++.|+.+.+ . .+.+...+..+..++...|++++|...|++..+..+. +...+..+...|...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATT-L-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHT-T-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 9999 99999999999986 2 2445677889999999999999999999999987544 66778889999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CCccHhhHHHHHHHHHhcCCHHHHH
Q 043758 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG--------FQPNMVTDLIMISNYCREGEVDAAL 293 (918)
Q Consensus 222 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~ 293 (918)
|...|++..+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+...|...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999864 3456788999999999999999999999987642 1334578889999999999999999
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHhhC
Q 043758 294 MLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDH-LLSFILLKNC 353 (918)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~ 353 (918)
..|+...+.. +.+..+|..+..++...|++++|...|++..+. .|+. ..+..+...+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 9999998765 457888999999999999999999999998764 4443 3343333333
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=5e-14 Score=154.84 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cCChhHHHH
Q 043758 258 WVLYSQMSDWGFQPNMVTDLIMISNYCR----EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK----HNRLMEVDE 329 (918)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~ 329 (918)
...+....+.| +...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|..
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444433 45556666666666 677777777777766643 44566666666666 667777777
Q ss_pred HHHHHHhC
Q 043758 330 LYKKMLAN 337 (918)
Q Consensus 330 ~~~~~~~~ 337 (918)
.|++..+.
T Consensus 101 ~~~~a~~~ 108 (490)
T 2xm6_A 101 WYKKAALK 108 (490)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 77666543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=3e-16 Score=166.25 Aligned_cols=257 Identities=11% Similarity=-0.020 Sum_probs=211.0
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+...|++++|...|+.+++.++. +..++..++.++...|++++|+..|+++.+.. +.+..++..++..+...|++
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 44457788888888889999887754 67789999999999999999999999999876 56778999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCcccHH----------------HHHHHHhccCchHHHHHHHHHHHhCCCCC-ChhhHHHHHH
Q 043758 149 DEVLEVVNIMRKKKGLVPALHPYK----------------SLFYALCKNIRTVEAESFAREMESQGFYV-DKLMYTSLIN 211 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~----------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~ 211 (918)
++|++.++.+.+.. +.+...+. .+...+ ..|++++|...|+++.+..+.. +..++..+..
T Consensus 149 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 149 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 99999999998722 22222221 233334 8899999999999998864432 4778999999
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHH
Q 043758 212 GYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDA 291 (918)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 291 (918)
.|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998763 3356788999999999999999999999998865 5567889999999999999999
Q ss_pred HHHHHHHHhhCCCCCC-----------cchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 292 ALMLLNSKVSSNLAPS-----------VHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 292 A~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
|...|+.+.... +.+ ..+|..+..++...|++++|..++++
T Consensus 304 A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 304 AVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999999887643 112 57899999999999999999988764
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=3.9e-14 Score=157.47 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=87.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHH-HcCCChhHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGL-CYKGFLDEV 151 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 151 (918)
...|+++.|..+|+++++..|. +...|...+..+.+.|++++|..+|++++... |+...|...+... ...|+.+.|
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhH
Confidence 4567888888889998887644 67788888988888999999999999988764 4666676666433 346777776
Q ss_pred HH----HHHHHHhcCCCCCC-cccHHHHHHHHhc---------cCchHHHHHHHHHHHhC
Q 043758 152 LE----VVNIMRKKKGLVPA-LHPYKSLFYALCK---------NIRTVEAESFAREMESQ 197 (918)
Q Consensus 152 ~~----~~~~~~~~~~~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~ 197 (918)
.+ +|+......|..|+ ...|...+....+ .|+++.|..+|++..+.
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 65 77776653454443 4556666655443 67888888888888873
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=2.9e-14 Score=158.51 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=108.5
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCC
Q 043758 85 FDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGL 164 (918)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (918)
|++.++.+|. +..+|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|.++|+++.+ .
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~ 75 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---K 75 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---T
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---c
Confidence 5566666654 7789999998 477899999999999999875 66778899999999999999999999999987 3
Q ss_pred CCCcccHHHHHHHH-hccCchHHHHH----HHHHHHhC-CCCC-ChhhHHHHHHHHhc---------CCChHHHHHHHHH
Q 043758 165 VPALHPYKSLFYAL-CKNIRTVEAES----FAREMESQ-GFYV-DKLMYTSLINGYCS---------NRNMKMAMRLFFR 228 (918)
Q Consensus 165 ~~~~~~~~~ll~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~ 228 (918)
.|+...|..++... ...|++++|.+ +|+..... |..| +...|...+..... .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 46777776666433 34567766654 77776553 4333 45678887776654 6889999999999
Q ss_pred HHh
Q 043758 229 MLK 231 (918)
Q Consensus 229 m~~ 231 (918)
..+
T Consensus 156 al~ 158 (530)
T 2ooe_A 156 GCV 158 (530)
T ss_dssp HTT
T ss_pred HHh
Confidence 987
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=3.5e-16 Score=159.31 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=95.0
Q ss_pred hHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHH
Q 043758 72 FVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEV 151 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (918)
+.+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 356788899999999883 3349999999999999999999999653 4777999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 152 LEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
++.++..++ ..+++.+.+.++.+|.+.|++++++++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 81 i~yl~~ark---~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 81 VKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHH---hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 998888876 24557888999999999999999998885 257789999999999999999999999976
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchH
Q 043758 232 TGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCY 311 (918)
Q Consensus 232 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 311 (918)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 47999999999999999999999988 278999999999999999999966655433 233334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 312 TVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
..++..|.+.|++++|..+++..+..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 56889999999999999999998754
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=8e-15 Score=161.13 Aligned_cols=394 Identities=12% Similarity=0.025 Sum_probs=241.0
Q ss_pred CCchHhHHHHHHHHHccCChHHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHHhcCChhhHHHHHHHhhcccCcc
Q 043758 410 KLANVAFTIYISALCKGGKYEKAYVCLFQLVNF-----G--YRP-LVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNC 481 (918)
Q Consensus 410 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 481 (918)
......|+.+...+...|++++|+..|++..+. + ..| ...+|..+..++...|++++|...++.+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka------- 120 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV------- 120 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH-------
Confidence 334578999999999999999999999887642 1 122 3456777888888887777666654432
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH---HHcCCCh
Q 043758 482 KWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKE--KRILEAEDMFKRMLKAGIDPDEVFFTTMING---YLQNRKP 556 (918)
Q Consensus 482 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~ 556 (918)
..+..............++..+..++.+. +++++|++.|++..+.. +.++..+..+..+ +...++.
T Consensus 121 --------~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 121 --------KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp --------HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCC
T ss_pred --------HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHH
Confidence 22332222111122456666666666654 46999999999999864 3345555555444 4457888
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043758 557 IEACQLFEKMKENSVQPGSYPYTALISGLVK----KGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRL 632 (918)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 632 (918)
++|++.+++..+.+ +.+...+..+...+.. .|++++|.+++++..... +.+..++..+...|.+.|++++|+..
T Consensus 192 ~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 192 QNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp CCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHH
Confidence 89999999988764 3344555555555444 567889999999988764 56778899999999999999999999
Q ss_pred HHHHHHCCCCcc-HHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHH
Q 043758 633 ENLMVTNQIEFD-LIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQK 711 (918)
Q Consensus 633 ~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 711 (918)
+++..+. .|+ ..++..+-..|.....
T Consensus 270 ~~~al~~--~p~~~~~~~~lg~~y~~~~~--------------------------------------------------- 296 (472)
T 4g1t_A 270 LKKALEY--IPNNAYLHCQIGCCYRAKVF--------------------------------------------------- 296 (472)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHh--CCChHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 9999863 343 2233333322221100
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 712 IVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGC 791 (918)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 791 (918)
. .... ............+..+.|...+++..+.. +.+...+..+...|...|++++|+..|+++++...
T Consensus 297 --~-~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 297 --Q-VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp --H-HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred --H-hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 0 0000 00000001111233577888888877642 22344677788888899999999999998887533
Q ss_pred CCCH--HHHHHHHH-HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccH
Q 043758 792 VPDK--TVYNTLLK-GLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNC 868 (918)
Q Consensus 792 ~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 868 (918)
.|.. ..+..+.. .+...|++++|+..+++..+ +.|+.......+ ..+..++++.+..+ |.++.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~---------~~l~~~~~~~l~~~-p~~~~~~ 433 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKMK---------DKLQKIAKMRLSKN-GADSEAL 433 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHH---------HHHHHHHHHHHHHC-C-CTTHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHH---------HHHHHHHHHHHHhC-CCCHHHH
Confidence 3322 12233332 23467889999999988876 556554333332 33455666666666 8889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 869 NWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 869 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
..|+.+|...|++++|.+.+++.++.|..
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999987744
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=2.8e-16 Score=159.99 Aligned_cols=283 Identities=13% Similarity=0.058 Sum_probs=119.8
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGW 258 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 258 (918)
-+.|++++|.++++++. ++.+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 36678899999998883 335899999999999999999999965 256678888899999999999999
Q ss_pred HHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 259 VLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988777664 4557788889999999999999888774 367779999999999999999999999866
Q ss_pred CCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHH
Q 043758 339 VAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTI 418 (918)
Q Consensus 339 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 418 (918)
..|..
T Consensus 149 ---------------------------------------------------------------------------~n~~~ 153 (449)
T 1b89_A 149 ---------------------------------------------------------------------------SNFGR 153 (449)
T ss_dssp ---------------------------------------------------------------------------TCHHH
T ss_pred ---------------------------------------------------------------------------hhHHH
Confidence 22677
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHH
Q 043758 419 YISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEV 498 (918)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 498 (918)
++.++.+.|++++|++.++.+ .++.+|..++.+|...|+++.|... ...
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~----------------------~l~--- 202 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC----------------------GLH--- 202 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHT----------------------TTT---
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHH----------------------HHH---
Confidence 888888888888888888877 2567888888888877766665332 111
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCC----
Q 043758 499 RGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE-NSVQP---- 573 (918)
Q Consensus 499 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~---- 573 (918)
+...+.-...++..|.+.|++++|..+++...... +.....|+-+...|++- ++++..+-++.... .+++|
T Consensus 203 --L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 203 --IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred --HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHH
Confidence 11233334467788888888999888888887654 55677777777777765 34444444333322 23333
Q ss_pred --CchhHHHHHHHHHhcCChhHHHH
Q 043758 574 --GSYPYTALISGLVKKGMVDLGCM 596 (918)
Q Consensus 574 --~~~~~~~l~~~~~~~g~~~~a~~ 596 (918)
+...|..+...|...++++.|..
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHH
Confidence 45678888888888888888865
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=3.7e-16 Score=165.52 Aligned_cols=258 Identities=10% Similarity=-0.042 Sum_probs=199.4
Q ss_pred HhcCChHHHHH-HHHHHHhCCCC---CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 73 VALGNIEDALR-HFDRLISKNIV---PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 73 ~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
...|++++|.. .|+......+. .+...+..+...+...|++++|+..|+++.+.. +.+..++..++..+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34466777776 77766554322 235578889999999999999999999999876 56778899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH---------------HHHHH
Q 043758 149 DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS---------------LINGY 213 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~ 213 (918)
++|++.|+.+.+ . .+.+...+..+..++...|++++|...|+++.+..+. +...+.. .+..+
T Consensus 115 ~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 115 LLAISALRRCLE-L-KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999987 2 2446778888899999999999999999999987544 3333321 23344
Q ss_pred hcCCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH
Q 043758 214 CSNRNMKMAMRLFFRMLKTGCEP-DSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAA 292 (918)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 292 (918)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998763211 46788888889999999999999999988764 55677888999999999999999
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 293 LMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
...|+.+.... +.+..++..+..++...|++++|...|+++..
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999988765 45677888899999999999999999988865
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=7e-16 Score=163.02 Aligned_cols=258 Identities=11% Similarity=-0.047 Sum_probs=192.1
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+.+.|++++|...|+.+++.++. +..+|..++.++...|++++|+..|+++.+.. +.+..++..++..+...|++
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccH
Confidence 44457778888888888888877644 67788888888888899999999998888775 55677888888888889999
Q ss_pred hHHHHHHHHHHhcCCCCCC-c----------ccHHHHHHHHhccCchHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhcC
Q 043758 149 DEVLEVVNIMRKKKGLVPA-L----------HPYKSLFYALCKNIRTVEAESFAREMESQGFY-VDKLMYTSLINGYCSN 216 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~-~----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 216 (918)
++|++.|+++.+. .|+ . ..+..+...+...|++++|...|+++.+..+. ++..+|..+...|...
T Consensus 150 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 150 QDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp HHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 9999988888762 222 1 22234467788888888999888888876433 1577888888888888
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 043758 217 RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLL 296 (918)
Q Consensus 217 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 296 (918)
|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|
T Consensus 227 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999888888763 3356688888888888889999988888888764 445778888888888889988888888
Q ss_pred HHHhhCCCC-----------CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 297 NSKVSSNLA-----------PSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 297 ~~~~~~~~~-----------~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
+.+.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 887654200 1356788888888888888877776543
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=3e-15 Score=155.59 Aligned_cols=256 Identities=13% Similarity=-0.037 Sum_probs=210.9
Q ss_pred hHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHH
Q 043758 72 FVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEV 151 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (918)
+...|++++|...|+++.+..+. +..++..++.++...|++++|+..|+++.+.. +.+..++..+...+...|++++|
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 36777888888888888877654 67788899999999999999999999999875 55778899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccHHHH--------------HH-HHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 043758 152 LEVVNIMRKKKGLVPALHPYKSL--------------FY-ALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN 216 (918)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 216 (918)
++.++.+.+. .+.+...+..+ .. .+...|++++|...++++.+..+. +...+..+...|...
T Consensus 109 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 109 LASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHh
Confidence 9999999872 22233333333 22 377889999999999999887544 788899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 043758 217 RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLL 296 (918)
Q Consensus 217 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 296 (918)
|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.+.|
T Consensus 186 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999998763 3456788999999999999999999999998865 556788999999999999999999999
Q ss_pred HHHhhCCCCC-----------CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 297 NSKVSSNLAP-----------SVHCYTVLIDALYKHNRLMEVDELYKKM 334 (918)
Q Consensus 297 ~~~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (918)
+.+....... +..+|..+..++...|++++|..++++.
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9887754111 4678889999999999999999988654
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=2.6e-15 Score=151.14 Aligned_cols=250 Identities=9% Similarity=0.020 Sum_probs=203.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|+++.|+..++.....++.+.......+.++|...|++++|+..++. . -+|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 57889999999888776554332234556788999999999999987654 2 3667788899999999999999999
Q ss_pred HHHHHHHhcCCCCC-CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 153 EVVNIMRKKKGLVP-ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
+.++.+.. .+..| +...+..+..++.+.|++++|...+++ +.+...+..++..|.+.|++++|...|+++.+
T Consensus 86 ~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 86 AELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999987 44444 455667777889999999999999987 34788999999999999999999999999998
Q ss_pred cCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc
Q 043758 232 TGCEPDSYTC---NTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSV 308 (918)
Q Consensus 232 ~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 308 (918)
. .|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.... +.+.
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 7 3554321 122334445689999999999999874 6788899999999999999999999999988876 5677
Q ss_pred chHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 043758 309 HCYTVLIDALYKHNRLME-VDELYKKMLAN 337 (918)
Q Consensus 309 ~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~ 337 (918)
.++..++..+...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 889999999999999876 57888888763
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=3.7e-14 Score=155.84 Aligned_cols=373 Identities=11% Similarity=-0.039 Sum_probs=234.3
Q ss_pred CcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHhhchhcHHHHHHHHHH
Q 043758 44 DSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVP-IKLACVSILRGLFAEEKFLEAFDYFIK 122 (918)
Q Consensus 44 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 122 (918)
....|+.+..++...|++++|+..| +.|++++.........| ...+|+.+..+|...|++++|+..+++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~----------~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECL----------RKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHH----------HHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH----------HHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3456777777887777777777775 44555555443322223 456899999999999999999999998
Q ss_pred HhhcC-------CCCcchhHHHHHHHHHc--CCChhHHHHHHHHHHhcCCCCCC-cccHHHHHHH---HhccCchHHHHH
Q 043758 123 ICNAG-------VDLNCWSYNVLIDGLCY--KGFLDEVLEVVNIMRKKKGLVPA-LHPYKSLFYA---LCKNIRTVEAES 189 (918)
Q Consensus 123 ~~~~~-------~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~---~~~~g~~~~a~~ 189 (918)
+.+.. ......++.....++.. .+++++|++.|++..+ ..|+ ...+..+..+ +...++.++|..
T Consensus 120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~---~~p~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE---KKPKNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 76421 01123456666655554 4578999999999987 3344 3444444444 344577788898
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHh----cCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 190 FAREMESQGFYVDKLMYTSLINGYC----SNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
.+++..+..+. +...+..+...+. ..|++++|...+++..... +.+...+..+...+...|++++|...+++..
T Consensus 197 ~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 197 PLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 99888876443 5666666654444 3567889999999988763 3455678888999999999999999999998
Q ss_pred hCCCCccHhhHHHHHHHHHhc-------------------CCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhH
Q 043758 266 DWGFQPNMVTDLIMISNYCRE-------------------GEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLME 326 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 326 (918)
+.. +.+..++..+...|... +..+.|...|+.....+ +.+..++..+...+...|++++
T Consensus 275 ~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 275 EYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHH
Confidence 874 44566777666665432 23566777777776655 4567778888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHh
Q 043758 327 VDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVK 406 (918)
Q Consensus 327 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 406 (918)
|++.|++.......+....
T Consensus 353 A~~~~~kaL~~~~~~~~~~------------------------------------------------------------- 371 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQ------------------------------------------------------------- 371 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHH-------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCChHHH-------------------------------------------------------------
Confidence 8888888876433221110
Q ss_pred cCCCCchHhHHHHH-HHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCC
Q 043758 407 SDPKLANVAFTIYI-SALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGN 485 (918)
Q Consensus 407 ~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 485 (918)
..+..+. -.....|++++|+..|.+..+. .|+.......
T Consensus 372 -------~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~------------------------------- 411 (472)
T 4g1t_A 372 -------LLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM------------------------------- 411 (472)
T ss_dssp -------HHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH-------------------------------
T ss_pred -------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH-------------------------------
Confidence 0111111 1234678888888888887764 3443222111
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043758 486 LDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAG 535 (918)
Q Consensus 486 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (918)
...+..+++......+ .+..+|..+..+|...|++++|++.|++..+.+
T Consensus 412 ~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1223344445544433 366777778888888888888888888877653
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=1.5e-15 Score=160.58 Aligned_cols=265 Identities=7% Similarity=-0.096 Sum_probs=212.3
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
+...|..++..+.+.|++++|+..|+++.... +.+..++..++..+...|++++|++.|+++.+. .+.+...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 45578899999999999999999999999876 567889999999999999999999999999872 244577889999
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhh----------HHHHHHHHhcCCChHHHHHHHHHHHhcCCC-CChhhHHHH
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLM----------YTSLINGYCSNRNMKMAMRLFFRMLKTGCE-PDSYTCNTL 244 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l 244 (918)
.+|...|++++|...|+++.+..+. +... +..+...|...|++++|+..|+++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999999886322 2222 334588899999999999999999987422 157789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCh
Q 043758 245 IHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRL 324 (918)
Q Consensus 245 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 324 (918)
...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+.+.+.. +.+..+|..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999998875 5578899999999999999999999999998875 45678899999999999999
Q ss_pred hHHHHHHHHHHhCCCC---C--------ChhhHHHHHhhCCCCccHHHHHHHH
Q 043758 325 MEVDELYKKMLANRVA---P--------DHLLSFILLKNCPEGTELQHALMLL 366 (918)
Q Consensus 325 ~~a~~~~~~~~~~~~~---~--------~~~~~~~ll~~~~~~~~~~~a~~~~ 366 (918)
++|...|+++.+.... + +...+..+..++...|..+.+....
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999998764211 1 2345556666666666666555443
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=5.9e-15 Score=153.29 Aligned_cols=266 Identities=8% Similarity=-0.078 Sum_probs=219.7
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
+...+..++..+...|++++|+..|+++.+.. +.+..++..++..+...|++++|.+.++.+.+. .+.+...+..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHH
Confidence 45577788899999999999999999999876 557788999999999999999999999999872 344567888899
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHhcCCChHHHHHHHHHHHhcCCCCChhh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSL--------------IN-GYCSNRNMKMAMRLFFRMLKTGCEPDSYT 240 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 240 (918)
.++...|++++|...++++.+..+. +...+..+ .. .+...|++++|...++++.+.. +.+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 9999999999999999999987543 44444444 33 4778899999999999998864 336678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 241 CNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 241 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+..+|..+..++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 8999999999999999999999998875 5567889999999999999999999999988765 4567889999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCC-----------ChhhHHHHHhhCCCCccHHHHHHHHHH
Q 043758 321 HNRLMEVDELYKKMLANRVAP-----------DHLLSFILLKNCPEGTELQHALMLLCE 368 (918)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (918)
.|++++|...|+++....... +...+..+...+...|+.+.|...+..
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999988753321 355667777788888888888776653
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=1.2e-14 Score=146.23 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=121.6
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhH---HHHHHHHHhcCCHHHHH
Q 043758 704 GKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF---CILINGHIAAGEIDQAI 780 (918)
Q Consensus 704 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~ 780 (918)
|++++|.+.+++ +.+...+..++..|.+.|++++|...|+++.+. .|+.... ..++..+...|++++|.
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 444445544442 346677888888999999999999999999885 4654321 22333344568899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhh-HHHHHHHHHh
Q 043758 781 GLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIP-AFNMFKEMIV 858 (918)
Q Consensus 781 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~ 858 (918)
.+|+++.+. .+.+...|+.+..++...|++++|...+++..+. .| +..++..++.++...|+..+ +..+++++.+
T Consensus 187 ~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999886 4457788889999999999999999999998863 44 66688888888888998876 5688888887
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 043758 859 HDHVPCLSNCNWLLNILCQEKHFHEAQIVL 888 (918)
Q Consensus 859 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 888 (918)
.. |.++. +.....+.+.++++..-|
T Consensus 264 ~~-P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 264 AH-RSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HC-TTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred hC-CCChH----HHHHHHHHHHHHHHHHHc
Confidence 75 55554 334455666666655433
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=6e-16 Score=170.21 Aligned_cols=152 Identities=9% Similarity=0.065 Sum_probs=126.6
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHH---HcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043758 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMK---REGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYN 799 (918)
Q Consensus 723 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 799 (918)
....+||++|++|++.|++++|.++|++|. ..|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345799999999999999999999998876 45899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCC------cccHHHHH
Q 043758 800 TLLKGLCQAGRL-SHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPC------LSNCNWLL 872 (918)
Q Consensus 800 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~ 872 (918)
.+|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. .+++.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999985 78999999999999999999999888654433 344444444 2223332 33455677
Q ss_pred HHHHhcC
Q 043758 873 NILCQEK 879 (918)
Q Consensus 873 ~~~~~~g 879 (918)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=2.9e-16 Score=172.72 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=100.7
Q ss_pred cccHHHHHHHHhccCchHHHHHHHHHHHh---CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 043758 168 LHPYKSLFYALCKNIRTVEAESFAREMES---QGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTL 244 (918)
Q Consensus 168 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (918)
..+|++++.+||+.|++++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45788889999999999999888887764 478889999999999999999999999999999888889999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc
Q 043758 245 IHGFFKMGLF-DKGWVLYSQMSDWGFQPNMVTDLIMISNYCRE 286 (918)
Q Consensus 245 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 286 (918)
|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9988888874 67888999998889889998888887655544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=1.3e-13 Score=132.38 Aligned_cols=197 Identities=13% Similarity=0.032 Sum_probs=107.9
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
++.++..+...+...|++++|+..|+++++.. |.+...+..+...+.+.|++++|+..|++..+. .+.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 44455566666666666666666666666554 445556666666666666666666666666551 122334455555
Q ss_pred HHHhcc-----------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 043758 176 YALCKN-----------IRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTL 244 (918)
Q Consensus 176 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (918)
.++... |++++|...|++..+..+. +...|..+..+|...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 6666666666666655333 45556666666666666666666666666554 455556666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 245 IHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSK 299 (918)
Q Consensus 245 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 299 (918)
..++...|++++|...|++..+.. +.+...+..+...+...|++++|...|+..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665543 334555555666666666666666665544
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=6.6e-13 Score=143.10 Aligned_cols=245 Identities=10% Similarity=-0.028 Sum_probs=90.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcH---HHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC---
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKF---LEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG--- 146 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 146 (918)
.+.|++++|.++|+.+.+.+ ++.++..+...|...|+. ++|+.+|++..+. +...+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CC
T ss_pred HhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCC
Confidence 34445555555555554443 222344444444445554 5555555555432 3334444444333333
Q ss_pred --ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHH---HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHH
Q 043758 147 --FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVE---AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221 (918)
Q Consensus 147 --~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 221 (918)
+.++|+++|++..+ .+ +...+..|...|...+..++ +.+.+......| ++..+..|...|...+.+++
T Consensus 87 ~~~~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFA-NG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHHHHHHHHH-TT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 44555555555554 22 12244444444444333222 222222222221 33444444444444443333
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc----CCHHHHHH
Q 043758 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG---LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCRE----GEVDAALM 294 (918)
Q Consensus 222 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 294 (918)
+......+.+.-...+...+..+...+...| +.++|.+.|++..+.| +++...+..|..+|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 3333222221111112224444444444455 5555555555555544 33333333344444332 34555555
Q ss_pred HHHHHhhCCCCCCcchHHHHHHH-H--HhcCChhHHHHHHHHHHh
Q 043758 295 LLNSKVSSNLAPSVHCYTVLIDA-L--YKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~ 336 (918)
.|+... . -+...+..|... + ...+++++|...|++..+
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 555444 1 233344444443 2 234444555555444443
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=2e-12 Score=139.31 Aligned_cols=219 Identities=11% Similarity=0.021 Sum_probs=116.1
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh---hHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL---DEVLEVVNIMRKKKGLVPALHPYKSLFYAL 178 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 178 (918)
.+...+.+.|++++|+.+|++..+.+ +...+..+...|...|+. ++|+++|++..+ . +...+..+..++
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~-~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD-T----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-C----CHHHHHHHHHHH
Confidence 46677788899999999999988776 344556666667777777 889999988876 2 555666666644
Q ss_pred hccC-----chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChH---HHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 043758 179 CKNI-----RTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMK---MAMRLFFRMLKTGCEPDSYTCNTLIHGFFK 250 (918)
Q Consensus 179 ~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 250 (918)
...+ ++++|...|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...+..
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 4444 77888888888888653 347777777777655433 3444444444433 23455556666666
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhc----CC
Q 043758 251 MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREG---EVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKH----NR 323 (918)
Q Consensus 251 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~ 323 (918)
.+.++++......+.+.-...++..+..|..+|...| +.++|...|+...+.| +++...+..|...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 6654444433222222111223336666666777777 6777777777776665 34444444555555433 45
Q ss_pred hhHHHHHHHHHH
Q 043758 324 LMEVDELYKKML 335 (918)
Q Consensus 324 ~~~a~~~~~~~~ 335 (918)
+++|...|++..
T Consensus 233 ~~~A~~~~~~aa 244 (452)
T 3e4b_A 233 EKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHc
Confidence 666666665553
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=2.8e-13 Score=140.76 Aligned_cols=250 Identities=10% Similarity=-0.011 Sum_probs=191.0
Q ss_pred chhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhc-HHHHHHHHHHHhhcCCCCcchhHHHHH
Q 043758 61 SQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEK-FLEAFDYFIKICNAGVDLNCWSYNVLI 139 (918)
Q Consensus 61 ~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 139 (918)
+.++...++.++.+.|++++|+..|+++++.++. +..+|+.+..++...|+ +++|+..|++++... +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 4456666777778888999999999999888755 67788888888999996 999999999998876 55778888899
Q ss_pred HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-CCC
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS-NRN 218 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 218 (918)
.++...|++++|+..|+++++. -+-+...|..+..++.+.|++++|...|+++++..+. +...|+.+..++.. .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998872 2345677888888888889999999999998887655 77888888888888 566
Q ss_pred hHHH-----HHHHHHHHhcCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC----
Q 043758 219 MKMA-----MRLFFRMLKTGCEPDSYTCNTLIHGFFKMG--LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREG---- 287 (918)
Q Consensus 219 ~~~A-----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 287 (918)
.++| +..|++..+.. +-+...|+.+..++...| ++++|.+.+..+ +.. +.+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 5777 47788887753 224557777777777777 578888888887 332 455677788888887764
Q ss_pred -----CHHHHHHHHHHH-hhCCCCCCcchHHHHHHHHH
Q 043758 288 -----EVDAALMLLNSK-VSSNLAPSVHCYTVLIDALY 319 (918)
Q Consensus 288 -----~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~ 319 (918)
..++|.++|+.+ .+.+ +.....|..+...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258888888888 5544 333445655555443
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.7e-13 Score=135.08 Aligned_cols=218 Identities=11% Similarity=0.035 Sum_probs=143.7
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCC--Cc----chhHHHHHHHH
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVD--LN----CWSYNVLIDGL 142 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~l~~~~ 142 (918)
+..+...|++++|...|+.+.+.+ .++.++..++.++...|++++|+..++++.+.... ++ ..++..+...+
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 344466677777777777777666 46667777888888888888888888777654311 11 46677777777
Q ss_pred HcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHH
Q 043758 143 CYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMA 222 (918)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 222 (918)
...|++++|++.|+.+.+ ..|+ ...+...|++++|...++++....+. +...|..+...+...|++++|
T Consensus 90 ~~~~~~~~A~~~~~~a~~---~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLT---EHRT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCCC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHh---cCch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHH
Confidence 778888888888877776 2233 23345556777777777777765322 445666677777777777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 223 MRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 223 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
+..|++..+.. +.+..++..+..++...|++++|...++...+.. +.+...+..+...|...|++++|...|+...+
T Consensus 159 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 159 VKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777776653 2345566666666677777777777777766653 33455666666666666666666666666554
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=2.8e-13 Score=130.01 Aligned_cols=201 Identities=12% Similarity=-0.058 Sum_probs=157.5
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
|++...+..+...+.+.|++++|+..|+...+ -.+.+...+..+..++.+.|++++|...|++..+..+. +...|..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 56778889999999999999999999999986 23445677888888999999999999999999987654 7788999
Q ss_pred HHHHHhcC-----------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHH
Q 043758 209 LINGYCSN-----------RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDL 277 (918)
Q Consensus 209 li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (918)
+..+|... |++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999999 99999999999998863 2345678888889999999999999999998887 6788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 278 IMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 278 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
.+...|...|++++|...|+...+.. |.+...+..+...+...|++++|...|++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999988765 45677888889999999999999999887643
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.3e-13 Score=133.58 Aligned_cols=227 Identities=9% Similarity=-0.011 Sum_probs=192.8
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCC-CCCC----cccH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKG-LVPA----LHPY 171 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~ 171 (918)
...+..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|++.++.+.+..+ ..++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4478888999999999999999999999887 7888999999999999999999999999876211 1112 4678
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043758 172 KSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM 251 (918)
Q Consensus 172 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 251 (918)
..+..++...|++++|...|++..+.. |+. ..+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 888899999999999999999999863 342 34666788999999999998762 22345788888899999
Q ss_pred CChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 043758 252 GLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELY 331 (918)
Q Consensus 252 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (918)
|++++|...++++.+.. +.+..++..+...|...|++++|...|+...+.. +.+..+|..+..++...|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998875 5578889999999999999999999999998875 456788999999999999999999999
Q ss_pred HHHHhC
Q 043758 332 KKMLAN 337 (918)
Q Consensus 332 ~~~~~~ 337 (918)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=1.5e-12 Score=130.91 Aligned_cols=229 Identities=10% Similarity=-0.019 Sum_probs=149.7
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchh----HHHHHHHHH
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWS----YNVLIDGLC 143 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~ 143 (918)
++..+...|++++|+..|+.+++.++. +..++..+..++...|++++|+..++++.+.. ++... |..+...+.
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHH
Confidence 344446777777777777777776643 44577777777788888888888888777632 23322 677777777
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 043758 144 YKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAM 223 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 223 (918)
..|++++|++.|+...+. .+.+...+..+..++...|++++|...|++..+..+. +...|..+...+...+++++|.
T Consensus 86 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888777762 2334566777777777777888887777777766333 5566666662333445777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCC-CCcc------HhhHHHHHHHHHhcCCHHHHH
Q 043758 224 RLFFRMLKTGCEPDSYTCNTLIHGFFKMGL---FDKGWVLYSQMSDWG-FQPN------MVTDLIMISNYCREGEVDAAL 293 (918)
Q Consensus 224 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~ 293 (918)
..|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..++..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777652 2234556666666666666 666777777665531 0122 145566666777777777777
Q ss_pred HHHHHHhhCC
Q 043758 294 MLLNSKVSSN 303 (918)
Q Consensus 294 ~~~~~~~~~~ 303 (918)
+.|+...+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 7777766654
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=2.4e-12 Score=129.27 Aligned_cols=239 Identities=12% Similarity=0.046 Sum_probs=193.0
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCccc----HH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHP----YK 172 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~ 172 (918)
+..+...+..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++.+.+ .+ ++... |.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV--NATKAKSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--CchhHHHHHHH
Confidence 3466778888999999999999999999876 55677999999999999999999999999987 33 33333 78
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043758 173 SLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG 252 (918)
Q Consensus 173 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 252 (918)
.+..++...|++++|...|++..+..+. +..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 8889999999999999999999987554 77899999999999999999999999998762 334556777763445556
Q ss_pred ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCCC------cchHHHHHHHHHhcC
Q 043758 253 LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGE---VDAALMLLNSKVSSN-LAPS------VHCYTVLIDALYKHN 322 (918)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~ll~~~~~~g 322 (918)
++++|...++++.+.. +.+...+..+...+...|+ .+.|...|+...+.. ..|+ ..+|..+...|...|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 9999999999998875 4457778888888888888 888888888776531 0133 257788899999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChh
Q 043758 323 RLMEVDELYKKMLANRVAPDHL 344 (918)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~~~~ 344 (918)
++++|.+.|++..+. .|+..
T Consensus 236 ~~~~A~~~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 236 DKVKADAAWKNILAL--DPTNK 255 (272)
T ss_dssp CHHHHHHHHHHHHHH--CTTCH
T ss_pred CHHHHHHHHHHHHhc--CccHH
Confidence 999999999999874 45543
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=9e-13 Score=132.72 Aligned_cols=249 Identities=11% Similarity=-0.063 Sum_probs=187.3
Q ss_pred hHhcCChHHHHHHHHHHHhCCCC---CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 72 FVALGNIEDALRHFDRLISKNIV---PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+...|++++|+..|+.+.+..+. .+..++..++..+...|++++|+..|+++.+.. +.+..++..++..+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 35668889999999998886421 245688889999999999999999999998876 55778899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHH
Q 043758 149 DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFR 228 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 228 (918)
++|++.|+.+.+. .+.+...+..+..++...|++++|...|+++.+.. |+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999872 23456788888889999999999999999998864 3444444455555677999999999988
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 043758 229 MLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQ---PNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLA 305 (918)
Q Consensus 229 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 305 (918)
..... +++...+ .++..+...++.++|...++........ .+..++..+...|...|++++|...|+.....+
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 77653 3343344 3666677778888899998888765311 125678888899999999999999999988754
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHH
Q 043758 306 PSVHCYTVLIDALYKHNRLMEVDELY 331 (918)
Q Consensus 306 ~~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (918)
|+. +.....++...|++++|++.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 322 334456777788888887766
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=1.7e-12 Score=130.66 Aligned_cols=252 Identities=12% Similarity=-0.022 Sum_probs=186.8
Q ss_pred hhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHH
Q 043758 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDAL 82 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~ 82 (918)
+..+|++++|...++.++...+..+. .+..++..+..++ ...|++++|.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~-----------------~~~~~~~~A~ 63 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDD--------------ERAQLLYERGVLY-----------------DSLGLRALAR 63 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHH--------------HHHHHHHHHHHHH-----------------HHTTCHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCc--------------hhHHHHHHHHHHH-----------------HHcccHHHHH
Confidence 45678899999999998776432100 0223344445555 5667777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC
Q 043758 83 RHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK 162 (918)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (918)
..|+.+.+.++. +..+|..++.++...|++++|+..|+++.+.. +.+..++..++..+...|++++|++.|+.+.+
T Consensus 64 ~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-- 139 (275)
T 1xnf_A 64 NDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ-- 139 (275)
T ss_dssp HHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--
Confidence 778887776644 67799999999999999999999999999876 55778999999999999999999999999987
Q ss_pred CCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--C-Chh
Q 043758 163 GLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE--P-DSY 239 (918)
Q Consensus 163 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p-~~~ 239 (918)
..|+.......+..+...|++++|...+++....... +...+ .++..+...++.++|+..+++..+.... | +..
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 140 -DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp -HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred -hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccH
Confidence 3455555555555667779999999999888776432 44444 4777888889999999999988754211 1 146
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 043758 240 TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLL 296 (918)
Q Consensus 240 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 296 (918)
.+..+...+...|++++|...|+++.... +.+.. .....+...|++++|.+.+
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVANN-VHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhHH---HHHHHHHHHHHHHhhHHHH
Confidence 78888999999999999999999999764 22322 2345677788888887776
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=4.4e-12 Score=131.74 Aligned_cols=240 Identities=11% Similarity=-0.057 Sum_probs=201.0
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC-hhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF-LDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
..+|..+..++...|++++|+..|++++... +.+..+|+.+..++...|+ +++|+..|+++++. .+.+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 4578888888999999999999999999886 5677899999999999997 99999999999972 234567888999
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFK-MGLF 254 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~ 254 (918)
.++...|++++|...|+++.+..+. +...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999998665 88899999999999999999999999999874 3356789999999988 6665
Q ss_pred hHH-----HHHHHHHHhCCCCccHhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcC-----
Q 043758 255 DKG-----WVLYSQMSDWGFQPNMVTDLIMISNYCREG--EVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHN----- 322 (918)
Q Consensus 255 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----- 322 (918)
++| ...+++.+... +.+...|..+..++...| ++++|.+.+..+ +.+ +.+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 888 48888888875 556788998999998888 689999999888 433 456678888999998874
Q ss_pred ----ChhHHHHHHHHH-HhCCCCCChhhH
Q 043758 323 ----RLMEVDELYKKM-LANRVAPDHLLS 346 (918)
Q Consensus 323 ----~~~~a~~~~~~~-~~~~~~~~~~~~ 346 (918)
..++|+++|+++ .+ +.|...-|
T Consensus 329 ~~~~~~~~A~~~~~~l~~~--~DP~r~~~ 355 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE--KDTIRKEY 355 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT--TCGGGHHH
T ss_pred chHHHHHHHHHHHHHHHHH--hCchhHHH
Confidence 258999999998 55 45554433
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=3.5e-11 Score=120.66 Aligned_cols=224 Identities=15% Similarity=0.027 Sum_probs=159.6
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc----CCChhHHHHHHHHHHhcCCCCCCcccH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY----KGFLDEVLEVVNIMRKKKGLVPALHPY 171 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (918)
++.++..+...+...|++++|+..|++..+.+ +..++..+...+.. .+++++|++.|++..+ .+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHH
Confidence 44566666677777777777777777776633 34566666677776 7777777777777766 32 55566
Q ss_pred HHHHHHHhc----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHhcCCCCChhhHHH
Q 043758 172 KSLFYALCK----NIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS----NRNMKMAMRLFFRMLKTGCEPDSYTCNT 243 (918)
Q Consensus 172 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 243 (918)
..+..+|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666766 777777777777777663 66677777777777 788888888888877654 4456666
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcchHHHHH
Q 043758 244 LIHGFFK----MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR----EGEVDAALMLLNSKVSSNLAPSVHCYTVLI 315 (918)
Q Consensus 244 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 315 (918)
+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666666 778888888888877764 45666677777777 788888888888877754 255677777
Q ss_pred HHHHh----cCChhHHHHHHHHHHhCC
Q 043758 316 DALYK----HNRLMEVDELYKKMLANR 338 (918)
Q Consensus 316 ~~~~~----~g~~~~a~~~~~~~~~~~ 338 (918)
..|.. .+++++|...|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 788888888888887754
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=2.8e-11 Score=121.35 Aligned_cols=223 Identities=12% Similarity=0.054 Sum_probs=191.8
Q ss_pred hhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhc----hhcHHHHHHHHHHHhhcCCCCcchhHHH
Q 043758 62 QSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFA----EEKFLEAFDYFIKICNAGVDLNCWSYNV 137 (918)
Q Consensus 62 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 137 (918)
.++...++..+...|++++|...|+++.+.+ ++.++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3455555666678888999999999988843 56688889999999 999999999999999886 6778899
Q ss_pred HHHHHHc----CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhc----cCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 043758 138 LIDGLCY----KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCK----NIRTVEAESFAREMESQGFYVDKLMYTSL 209 (918)
Q Consensus 138 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (918)
+...+.. .+++++|++.|++..+ .+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 9999999 9999999999999988 33 67788888888988 999999999999999875 67788888
Q ss_pred HHHHhc----CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCccHhhHHHHHH
Q 043758 210 INGYCS----NRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFK----MGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281 (918)
Q Consensus 210 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 281 (918)
...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 999999999999998863 45778888888888 999999999999999875 3667778888
Q ss_pred HHHh----cCCHHHHHHHHHHHhhCC
Q 043758 282 NYCR----EGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 282 ~~~~----~g~~~~A~~~~~~~~~~~ 303 (918)
.|.. .+++++|.+.|+...+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8988 999999999999988765
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=1.5e-12 Score=128.25 Aligned_cols=201 Identities=12% Similarity=0.057 Sum_probs=107.7
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
...+|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++.+.+. .+.+...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 34455666666666777777777777766544 345556666666666677777777777666651 123345555566
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD 255 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 255 (918)
.++...|++++|...++++.+..+. +...+..+...|...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666654332 45556666666666666666666666665542 223445555556666666666
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
+|...++++.+.. +.+..++..+...|...|++++|...|+.+.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666665543 334555555666666666666666666665554
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=7.7e-12 Score=123.88 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
+..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 3333334444444444444444433321 1122333333333444444444444444433322 2223333333333444
Q ss_pred cCCHHHHHHHHHHHh
Q 043758 286 EGEVDAALMLLNSKV 300 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~ 300 (918)
.|+.++|.+.++.+.
T Consensus 222 ~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 222 FEDRDTAASYGLQLK 236 (252)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 444444444444333
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=1.2e-11 Score=122.60 Aligned_cols=199 Identities=11% Similarity=-0.022 Sum_probs=168.6
Q ss_pred HhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc
Q 043758 65 LLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY 144 (918)
Q Consensus 65 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (918)
....+..+...|++++|...|+.+.+.++. +..++..++..+...|++++|+..|+++.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 334455567888888888888888877643 67789999999999999999999999998876 5577889999999999
Q ss_pred CCChhHHHHHHHHHHhcCCCCC-CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVP-ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAM 223 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 223 (918)
.|++++|++.++.+.+ .+..| +...+..+..++...|++++|...|++..+..+. +...+..+...|...|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999986 33344 4567788888999999999999999999887543 6888999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 224 RLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 224 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
..|+++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999998763 3456678888889999999999999999998864
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=1.1e-11 Score=120.27 Aligned_cols=201 Identities=10% Similarity=-0.018 Sum_probs=123.1
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFY 176 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 176 (918)
+.++..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+. .+.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 4455566666666666666666666666554 334556666666666666666666666666551 1234455556666
Q ss_pred HHhcc-CchHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 043758 177 ALCKN-IRTVEAESFAREMESQGFYV-DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLF 254 (918)
Q Consensus 177 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 254 (918)
++... |++++|...++++.+.+..| +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 66666666666666621122 24556666667777777777777777766542 22345666666667777777
Q ss_pred hHHHHHHHHHHhCCCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 255 DKGWVLYSQMSDWGFQ-PNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 255 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777766553 2 45555666666666777777777777766543
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=1.6e-11 Score=119.06 Aligned_cols=200 Identities=9% Similarity=-0.150 Sum_probs=107.3
Q ss_pred chhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043758 132 CWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLIN 211 (918)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 211 (918)
...+..++..+...|++++|++.|+.+.+. .+.+...+..+..++...|++++|...+++..+..+. +..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 344555555555666666666666655541 1223445555555555566666666666655554322 4455555555
Q ss_pred HHhcC-CChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCH
Q 043758 212 GYCSN-RNMKMAMRLFFRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEV 289 (918)
Q Consensus 212 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 289 (918)
.|... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 666666666666555211222 2345555555556666666666666555543 23345555555556666666
Q ss_pred HHHHHHHHHHhhCCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 290 DAALMLLNSKVSSNLA-PSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 290 ~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
++|...++.+.... + .+...+..+...+...|+.+.|..+++.+..
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666665555443 2 3444455555555555666666665555543
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=8.6e-09 Score=114.46 Aligned_cols=148 Identities=8% Similarity=-0.029 Sum_probs=101.5
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
..|...+....+.|..+.|..+|...++.........|......-. ...++.+.|..+|
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~---------------------~~~~d~e~Ar~if 493 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY---------------------HISKDTKTACKVL 493 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH---------------------TTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH---------------------HhCCCHHHHHHHH
Confidence 4677888888888999999999999987510112222221111111 1124578888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDP--DEVFFTTMINGYLQNRKPIEACQLFEKMKENSV 571 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 571 (918)
+..++. .+.+...+...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 494 e~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~-- 570 (679)
T 4e6h_A 494 ELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK-- 570 (679)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--
T ss_pred HHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888876 44467777888888888899999999999988763211 3457778888778889999999999988876
Q ss_pred CCCchhHHHHHHHH
Q 043758 572 QPGSYPYTALISGL 585 (918)
Q Consensus 572 ~~~~~~~~~l~~~~ 585 (918)
.|+......+++-|
T Consensus 571 ~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 571 FPEVNKLEEFTNKY 584 (679)
T ss_dssp STTCCHHHHHHHHT
T ss_pred CCCCcHHHHHHHHh
Confidence 45555554444433
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.41 E-value=5.3e-12 Score=124.31 Aligned_cols=200 Identities=11% Similarity=0.018 Sum_probs=162.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|++++|...|+++.+.++. +..++..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|+
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp --------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHH
Confidence 5666667777777877776644 67788899999999999999999999998875 557788999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
+.++.+.+. .+.+...+..+..++...|++++|...++++.+..+. +...+..+...|...|++++|+..|+++.+.
T Consensus 112 ~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 112 DMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999872 2445677888889999999999999999999887543 7888999999999999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHH
Q 043758 233 GCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIM 279 (918)
Q Consensus 233 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (918)
. +.+..++..+..++...|++++|...++++.+.. +.+...+..+
T Consensus 189 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 189 D-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 3 3456788999999999999999999999998874 3344444443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=1.2e-11 Score=132.67 Aligned_cols=303 Identities=12% Similarity=-0.002 Sum_probs=210.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC
Q 043758 502 KPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD----EVFFTTMINGYLQNRKPIEACQLFEKMKEN----SVQP 573 (918)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~ 573 (918)
......+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3456667778888999999999999999998864 223 356778888999999999999999887542 2112
Q ss_pred -CchhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCC--------------------HH
Q 043758 574 -GSYPYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYTALINHFLRAGE--------------------FE 627 (918)
Q Consensus 574 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~--------------------~~ 627 (918)
...++..+...+...|++++|...+++..+. +.. ....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2346677788888999999999999887764 101 114477788888888888 66
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChh
Q 043758 628 FASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKG 707 (918)
Q Consensus 628 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 707 (918)
+|...+++..+
T Consensus 165 ~A~~~~~~al~--------------------------------------------------------------------- 175 (406)
T 3sf4_A 165 AAVDFYEENLS--------------------------------------------------------------------- 175 (406)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 66666665542
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCc----HHhHHHHHHHHHhcCCHHHHHH
Q 043758 708 TVQKIVLKVKDIEFMP-NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGL-RPN----QVTFCILINGHIAAGEIDQAIG 781 (918)
Q Consensus 708 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~ 781 (918)
+... .+..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|..
T Consensus 176 ----~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 176 ----LVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp ----HHHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----HHHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 1111 11111 235677778888888888888888887765310 111 2266777788888899999998
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCChhhHHH
Q 043758 782 LFNQMNAD----GCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR----GFVPK-KATYEHLLECFCANCLSIPAFN 851 (918)
Q Consensus 782 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~ 851 (918)
.+++..+. +..+ ...++..+...|...|++++|...+++..+. +..+. ..++..+..++.+.|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88887653 1111 1457778888888999999999988887642 11111 3466777778888999999998
Q ss_pred HHHHHHhC----CC-CCCcccHHHHHHHHHhcCCH
Q 043758 852 MFKEMIVH----DH-VPCLSNCNWLLNILCQEKHF 881 (918)
Q Consensus 852 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 881 (918)
.+++.... +. +....++..++.++...|+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 88887643 21 12255677888888888765
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=1.3e-08 Score=113.14 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHH
Q 043758 740 RMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP--DKTVYNTLLKGLCQAGRLSHVFSV 817 (918)
Q Consensus 740 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 817 (918)
+.+.|..+|+..++. .+-+...+...+.-....|+.+.|..+|+..+.....+ ....|...+..-...|+.+.+..+
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467777777766654 22233344555555556677777777777776642211 235666666666677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHH
Q 043758 818 FYSMHKRGFVPKKATYEHLLE 838 (918)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~ 838 (918)
.+++.+. .|+......+..
T Consensus 564 ~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 564 EKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHH--STTCCHHHHHHH
T ss_pred HHHHHHh--CCCCcHHHHHHH
Confidence 7777653 444444444444
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=9.4e-12 Score=133.72 Aligned_cols=269 Identities=13% Similarity=0.026 Sum_probs=204.1
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHhhchhcHHHHHHHHHHHhhcC-----CCCcchhHHHH
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIK----LACVSILRGLFAEEKFLEAFDYFIKICNAG-----VDLNCWSYNVL 138 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l 138 (918)
.+..+...|++++|...|+++++.++. +. .+|..+...|...|++++|+..|+++.... .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 345568899999999999999887643 33 478889999999999999999999877541 12344678889
Q ss_pred HHHHHcCCChhHHHHHHHHHHhcC---C-CCCCcccHHHHHHHHhccCc-----------------hHHHHHHHHHHHhC
Q 043758 139 IDGLCYKGFLDEVLEVVNIMRKKK---G-LVPALHPYKSLFYALCKNIR-----------------TVEAESFAREMESQ 197 (918)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~~~~~ 197 (918)
...+...|++++|++.+++..+.. + .+.....+..+..+|...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999877521 1 11224467788888999999 99999988876542
Q ss_pred ----CC-CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 198 ----GF-YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE-PD----SYTCNTLIHGFFKMGLFDKGWVLYSQMSDW 267 (918)
Q Consensus 198 ----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 267 (918)
+. .....++..+...|...|++++|+..|++..+.... ++ ..++..+...+...|++++|...+++....
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11 112347888899999999999999999998753111 12 226788888999999999999999988654
Q ss_pred CC--C---ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 268 GF--Q---PNMVTDLIMISNYCREGEVDAALMLLNSKVSSNL-----APSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 268 ~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
.. . ....++..+...|...|++++|...+++...... .....++..+...|...|++++|...|++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 21 0 1246778889999999999999999988765310 111346778889999999999999999988763
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1.8e-11 Score=131.48 Aligned_cols=199 Identities=11% Similarity=-0.028 Sum_probs=145.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHccCC-----------------hhHHHHHHHHHHHc
Q 043758 697 FSAVFSNGKKGTVQKIVLKVKDI----EFM-PNLYLYNDIFLLLCGVGR-----------------MDDAYDHFQMMKRE 754 (918)
Q Consensus 697 ~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m~~~ 754 (918)
...+...|+++.|...+++..+. +.. ....++..+...|...|+ +++|+..+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34445556777776666655432 111 234678888999999999 99999998886542
Q ss_pred ----CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 043758 755 ----GLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNADG-CVPD----KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR 824 (918)
Q Consensus 755 ----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (918)
+-.|. ..++..+...|...|++++|+..+++..+.. -.++ ...+..+..+|...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11122 2367778888999999999999999987741 0112 237888899999999999999999987642
Q ss_pred ----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCC----C-CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 825 ----GFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHD----H-VPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 825 ----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
+..+ ...++..+..++...|++++|...+++.+... . +....++..++.+|.+.|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 13467778889999999999999999987542 0 112457889999999999999999999998775
Q ss_pred C
Q 043758 895 G 895 (918)
Q Consensus 895 ~ 895 (918)
-
T Consensus 373 ~ 373 (411)
T 4a1s_A 373 A 373 (411)
T ss_dssp C
T ss_pred H
Confidence 4
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=1.5e-10 Score=117.99 Aligned_cols=217 Identities=10% Similarity=0.004 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHhhc-------hhcH-------HHHHHHHHHHhh-cCCCCcchhHHHHHHHHH
Q 043758 79 EDALRHFDRLISKNIVPIKLACVSILRGLFA-------EEKF-------LEAFDYFIKICN-AGVDLNCWSYNVLIDGLC 143 (918)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 143 (918)
+.|...|++++...+. ++..|..++..+.. .|++ ++|...|++.+. .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 5778888888887644 67788888877754 3554 788888888776 33 345557777777777
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCCc-c-cHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHh-cCCChH
Q 043758 144 YKGFLDEVLEVVNIMRKKKGLVPAL-H-PYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYC-SNRNMK 220 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~ 220 (918)
+.|++++|.++|+++.+ ..|+. . .|..++..+.+.|++++|..+|++..+..+. +...|...+.... ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHH
Confidence 88888888888888776 34432 2 5677777777777777777777777765432 3444443333322 257777
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCc--cHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043758 221 MAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG-FQP--NMVTDLIMISNYCREGEVDAALMLLN 297 (918)
Q Consensus 221 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 297 (918)
+|..+|++..+.. +-+...|..++..+...|++++|..+|++..... ++| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766542 2234566666666666777777777777776642 233 24456666666666677777777766
Q ss_pred HHhhC
Q 043758 298 SKVSS 302 (918)
Q Consensus 298 ~~~~~ 302 (918)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=1.1e-11 Score=133.05 Aligned_cols=270 Identities=13% Similarity=0.020 Sum_probs=201.4
Q ss_pred hhhhhhhHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHhhchhcHHHHHHHHHHHhhc----CC-CCcchhHH
Q 043758 66 LLYQNDFVALGNIEDALRHFDRLISKNIVPI----KLACVSILRGLFAEEKFLEAFDYFIKICNA----GV-DLNCWSYN 136 (918)
Q Consensus 66 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 136 (918)
...+..+...|++++|...|+++++.++. + ..++..+...+...|++++|+..++++... +. +....++.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34455568888888888889988887543 3 357888999999999999999999987643 11 12245788
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhcCCCCCC----cccHHHHHHHHhccCc--------------------hHHHHHHHH
Q 043758 137 VLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA----LHPYKSLFYALCKNIR--------------------TVEAESFAR 192 (918)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~ 192 (918)
.+...+...|++++|+..++...+.....++ ...+..+...+...|+ +++|...++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 8889999999999999999987752111122 3467788888999999 999999888
Q ss_pred HHHhC----CCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCChhHHHHHHH
Q 043758 193 EMESQ----GFYV-DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGC-EPD----SYTCNTLIHGFFKMGLFDKGWVLYS 262 (918)
Q Consensus 193 ~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 262 (918)
+..+. +..| ...++..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76542 1111 234688888999999999999999998875311 122 2367888888999999999999999
Q ss_pred HHHhCC----CCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----cchHHHHHHHHHhcCChhHHHHHHH
Q 043758 263 QMSDWG----FQP-NMVTDLIMISNYCREGEVDAALMLLNSKVSSNL-APS----VHCYTVLIDALYKHNRLMEVDELYK 332 (918)
Q Consensus 263 ~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~ 332 (918)
+..... -.+ ...++..+...|...|++++|...++....... ..+ ..++..+...|...|++++|...|+
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 886531 111 155778889999999999999999988765310 011 4567788899999999999999998
Q ss_pred HHHh
Q 043758 333 KMLA 336 (918)
Q Consensus 333 ~~~~ 336 (918)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=1.5e-11 Score=127.98 Aligned_cols=268 Identities=12% Similarity=0.009 Sum_probs=199.8
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHhhchhcHHHHHHHHHHHhhc----CC-CCcchhHHHHH
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPI----KLACVSILRGLFAEEKFLEAFDYFIKICNA----GV-DLNCWSYNVLI 139 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~ 139 (918)
+..+...|++++|...|+++.+.++. + ..++..+...+...|++++|+..++++... +. +....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 44557888999999999998887543 3 357788999999999999999999987643 11 12345788888
Q ss_pred HHHHcCCChhHHHHHHHHHHhcCCCCCC----cccHHHHHHHHhccCc--------------------hHHHHHHHHHHH
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKKGLVPA----LHPYKSLFYALCKNIR--------------------TVEAESFAREME 195 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~ 195 (918)
..+...|++++|.+.+++..+...-.++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999987652111122 3367778888889999 999998888765
Q ss_pred hC----CCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 196 SQ----GFY-VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGC-EPD----SYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 196 ~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
+. +.. .....+..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 111 1234688888999999999999999998875310 111 2367788888999999999999999886
Q ss_pred hCC----CCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 266 DWG----FQP-NMVTDLIMISNYCREGEVDAALMLLNSKVSSN-----LAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 266 ~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
... -.+ ...++..+...|...|++++|...++...... ......++..+...+...|++++|...|++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 531 111 15577788899999999999999998876531 01113467788899999999999999999887
Q ss_pred hC
Q 043758 336 AN 337 (918)
Q Consensus 336 ~~ 337 (918)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 64
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=2.1e-11 Score=132.25 Aligned_cols=216 Identities=12% Similarity=-0.005 Sum_probs=138.5
Q ss_pred hcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh-hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHH
Q 043758 111 EKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL-DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAES 189 (918)
Q Consensus 111 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 189 (918)
+++++++..++...... +.+...+..+...+...|++ ++|++.|++..+. .+.+...|..+..+|...|++++|..
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44566666666655443 34555666666666677777 7777777776651 12335566666666777777777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhcC---------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------C
Q 043758 190 FAREMESQGFYVDKLMYTSLINGYCSN---------RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM--------G 252 (918)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------g 252 (918)
.|++..+.. |+...+..+...|... |++++|+..|++..+.. +.+...|..+..++... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 777766653 3456666666667666 77777777777766652 22345666666666666 6
Q ss_pred ChhHHHHHHHHHHhCCCC---ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHH
Q 043758 253 LFDKGWVLYSQMSDWGFQ---PNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDE 329 (918)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 329 (918)
++++|...|++..+.. + .+...+..+...|...|++++|.+.|++..+.. +.+..++..+..++...|++++|++
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776653 2 356667777777777777777777777766654 3345566667777777777777776
Q ss_pred HHHHH
Q 043758 330 LYKKM 334 (918)
Q Consensus 330 ~~~~~ 334 (918)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 55443
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=4e-11 Score=124.74 Aligned_cols=273 Identities=13% Similarity=0.007 Sum_probs=174.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCC-----chhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHH
Q 043758 545 TMINGYLQNRKPIEACQLFEKMKENSVQPG-----SYPYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYT 614 (918)
Q Consensus 545 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~ 614 (918)
.....+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|..+++...+. +.. ....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445555566666666666555542 22 134445555566666666666666554432 111 1245667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchh
Q 043758 615 ALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKS 694 (918)
Q Consensus 615 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (918)
.+..++...|++++|...+++..+...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------------------------------- 114 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISR----------------------------------------------------- 114 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHH-----------------------------------------------------
Confidence 777888888888888888877653100
Q ss_pred hhHHHHHhCCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHccCC--------------------hhHHHHHHHHHHH
Q 043758 695 TAFSAVFSNGKKGTVQKIVLKVKDIEF-MPNLYLYNDIFLLLCGVGR--------------------MDDAYDHFQMMKR 753 (918)
Q Consensus 695 ~~~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~~ 753 (918)
+.+. .....++..+...|...|+ +++|...+++...
T Consensus 115 -----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 115 -----------------------ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp -----------------------HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 0000 0012355555666666666 7777777766543
Q ss_pred c----CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 754 E----GLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNAD----GCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 754 ~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
. +..|. ...+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11121 236677778888999999999999888764 1111 124778888889999999999999988764
Q ss_pred C----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCC----C-CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 824 R----GFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHD----H-VPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 824 ~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
. +..+ ...++..+...+...|++++|...+++++... . +....++..++.+|.+.|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 1111 13467777788999999999999999886532 0 11145788999999999999999999999877
Q ss_pred CC
Q 043758 894 RG 895 (918)
Q Consensus 894 ~~ 895 (918)
..
T Consensus 332 ~~ 333 (338)
T 3ro2_A 332 IS 333 (338)
T ss_dssp C-
T ss_pred HH
Confidence 54
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=1.1e-10 Score=108.90 Aligned_cols=167 Identities=13% Similarity=0.018 Sum_probs=147.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLL 802 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 802 (918)
++..|..+...|.+.|++++|+..|++.++. .| +...+..+..+|...|++++|+..+..+..... -+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 6778999999999999999999999999885 44 455788899999999999999999999988632 2567788888
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 043758 803 KGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFH 882 (918)
Q Consensus 803 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 882 (918)
..+...++++.|...+.+..+. .+.+...+..+..++.+.|++++|+..+++.++.. |.++.++..++.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 8999999999999999998863 23466788888889999999999999999999887 888999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 043758 883 EAQIVLDVMHKRG 895 (918)
Q Consensus 883 ~A~~~~~~~~~~~ 895 (918)
+|.+.+++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998865
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=3.5e-10 Score=115.33 Aligned_cols=218 Identities=11% Similarity=-0.014 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhhcCCCCcchhHHHHHHHHH-------cCCCh-------hHHHHHHHHHHhcCCCCCC-cccHHHHHHHH
Q 043758 114 LEAFDYFIKICNAGVDLNCWSYNVLIDGLC-------YKGFL-------DEVLEVVNIMRKKKGLVPA-LHPYKSLFYAL 178 (918)
Q Consensus 114 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~~ 178 (918)
++|+..|++++... +.+...|..++..+. +.|++ ++|+.+|++..+ .+.|+ ...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHH
Confidence 78899999998875 567778888887775 35886 899999999986 23444 55888999999
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChhH
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKL-MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFF-KMGLFDK 256 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~ 256 (918)
.+.|++++|..+|++..+..+. +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999986432 444 89999999999999999999999999863 234445544333322 3699999
Q ss_pred HHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCC--CcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 257 GWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN-LAP--SVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
|..+|+..++.. +.+...+..++..+.+.|++++|+.+|++..... ++| ....|..++......|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998764 4567889999999999999999999999999863 344 356788889999999999999999999
Q ss_pred HHhC
Q 043758 334 MLAN 337 (918)
Q Consensus 334 ~~~~ 337 (918)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=1.1e-10 Score=123.82 Aligned_cols=301 Identities=10% Similarity=0.002 Sum_probs=200.8
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CC--CCcHHHHHHHHHHH--HcCCChHHHH-----------HHHHHHHhCCCCCCchh
Q 043758 515 LCKEKRILEAEDMFKRMLKA--GI--DPDEVFFTTMINGY--LQNRKPIEAC-----------QLFEKMKENSVQPGSYP 577 (918)
Q Consensus 515 ~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~--~~~~~~~~A~-----------~~~~~~~~~~~~~~~~~ 577 (918)
+.+.+++++|..+++++.+. .+ .++...|..++..- ...+..+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 35678888888888887652 22 22333333333211 1112222233 5555554321 11111
Q ss_pred H------HHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHH
Q 043758 578 Y------TALISGLVKKGMVDLGCMYLDRMLAD----GFVP-NVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLI 646 (918)
Q Consensus 578 ~------~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 646 (918)
+ ......+...|++++|...++...+. +-.+ ...++..+..+|...|+++.|+..+++..+.
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~------- 172 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI------- 172 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 1 12445567789999999999988765 1111 3467888888899999999999888887531
Q ss_pred HHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCC--CCC
Q 043758 647 AYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEF--MPN 724 (918)
Q Consensus 647 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~--~~~ 724 (918)
+. +.+. +..
T Consensus 173 ------------------------------------------------------------------~~---~~~~~~~~~ 183 (383)
T 3ulq_A 173 ------------------------------------------------------------------YK---EHEAYNIRL 183 (383)
T ss_dssp ------------------------------------------------------------------HH---TCSTTHHHH
T ss_pred ------------------------------------------------------------------HH---hCccchHHH
Confidence 00 0000 112
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKRE----GLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNAD----GC-VPD 794 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~ 794 (918)
..+++.+...|...|++++|+..+++..+. +-.+. ..++..+..+|...|++++|+..+++..+. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 457888889999999999999999987653 11111 136788889999999999999999998873 23 224
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCC---hhhHHHHHHHHHhCCCCCCccc
Q 043758 795 KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR----GFVPKKATYEHLLECFCANCL---SIPAFNMFKEMIVHDHVPCLSN 867 (918)
Q Consensus 795 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~ 867 (918)
..++..+..+|...|++++|...+++..+. +-+.....+..+...+...|+ .++|+..+++.. ..+.....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~ 341 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHH
Confidence 577889999999999999999999987642 111122235667778888888 777777777651 11334667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 868 CNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 868 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
+..++.+|...|++++|...+++..+..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999987643
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=1.3e-10 Score=108.22 Aligned_cols=166 Identities=11% Similarity=-0.043 Sum_probs=110.4
Q ss_pred CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 043758 167 ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIH 246 (918)
Q Consensus 167 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 246 (918)
+...|..+...|.+.|++++|...|++..+..+. +..+|..+..+|...|++++|+..+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3455666666666667777777777766665443 56667777777777777777777777766542 223445555566
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhH
Q 043758 247 GFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLME 326 (918)
Q Consensus 247 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 326 (918)
.+...++++.+...+.+..... +.+...+..+...|.+.|++++|.+.|+...+.+ |.+..+|..+..+|...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6667777777777777766654 4456666667777777777777777777766654 4456667777777777777777
Q ss_pred HHHHHHHHHh
Q 043758 327 VDELYKKMLA 336 (918)
Q Consensus 327 a~~~~~~~~~ 336 (918)
|++.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777765
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=2.5e-11 Score=124.67 Aligned_cols=246 Identities=11% Similarity=0.041 Sum_probs=162.3
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHH
Q 043758 575 SYPYTALISGLVKKGMVDLGCMYLDRMLAD-------GFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIA 647 (918)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 647 (918)
..++..+...+...|++++|..+++++.+. ..+....++..+..+|...|++++|...+++..+.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 98 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI-------- 98 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence 345666677777788888888877777663 22334567788888899999999999988887631
Q ss_pred HHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhh
Q 043758 648 YIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYL 727 (918)
Q Consensus 648 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 727 (918)
.........+.....
T Consensus 99 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 113 (311)
T 3nf1_A 99 -----------------------------------------------------------------REKTLGKDHPAVAAT 113 (311)
T ss_dssp -----------------------------------------------------------------HHHHHCTTCHHHHHH
T ss_pred -----------------------------------------------------------------HHHHhCCCChHHHHH
Confidence 000000111223467
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc------CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-
Q 043758 728 YNDIFLLLCGVGRMDDAYDHFQMMKRE------GLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNAD------GCVP- 793 (918)
Q Consensus 728 ~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p- 793 (918)
+..+...|...|++++|...++++.+. +-.|+ ...+..+...+...|++++|+.+++++.+. +..|
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 193 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 778888888899999999998888764 22233 336777888889999999999999988774 1133
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-------GFVPKKA-------TYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
...++..+..+|...|++++|...++++.+. ...+... .+..+...+...+.+.+|...+......
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 2467788888999999999999999888742 1122211 2222333445556677777778777765
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 860 DHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 860 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
. +.+..++..++.+|.+.|++++|.+.+++..+.
T Consensus 274 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 274 S-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4 667888999999999999999999999988764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=8.3e-11 Score=127.56 Aligned_cols=218 Identities=11% Similarity=-0.031 Sum_probs=182.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcH-HHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHH
Q 043758 75 LGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKF-LEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLE 153 (918)
Q Consensus 75 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (918)
..++++++..++......+ .+...+..+..++...|++ ++|+..|+++.+.. +.+..+|..+...|...|++++|++
T Consensus 81 ~~~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3447777788887766553 3677889999999999999 99999999998876 5567899999999999999999999
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhcc---------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC--------
Q 043758 154 VVNIMRKKKGLVPALHPYKSLFYALCKN---------IRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN-------- 216 (918)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 216 (918)
.|+...+ ..|+...+..+..++... |++++|...|++..+..+. +...|..+..+|...
T Consensus 159 ~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 159 CFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhcccc
Confidence 9999987 457777888888889998 9999999999999887554 788899999999988
Q ss_pred CChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 043758 217 RNMKMAMRLFFRMLKTGCE--PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALM 294 (918)
Q Consensus 217 g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 294 (918)
|++++|+..|++..+.... .+...|..+..++...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886310 366788999999999999999999999998875 4567778888888999999888887
Q ss_pred HHHHH
Q 043758 295 LLNSK 299 (918)
Q Consensus 295 ~~~~~ 299 (918)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 66443
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=3e-10 Score=120.27 Aligned_cols=232 Identities=12% Similarity=0.012 Sum_probs=142.4
Q ss_pred HHHHhhchhcHHHHHHHHHHHhhc----CCCC-cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC-----cccHH
Q 043758 103 ILRGLFAEEKFLEAFDYFIKICNA----GVDL-NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA-----LHPYK 172 (918)
Q Consensus 103 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~ 172 (918)
....+...|++++|+..|+++... +-++ ...++..+...+...|+++.|++.+++..+...-.++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566667777777777666543 1011 2345666666677777777777766666542111111 23566
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHhcCCChHHHHHHHHHHHhc----CCCC-ChhhHH
Q 043758 173 SLFYALCKNIRTVEAESFAREMESQGFY-VD----KLMYTSLINGYCSNRNMKMAMRLFFRMLKT----GCEP-DSYTCN 242 (918)
Q Consensus 173 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~ 242 (918)
.+..+|...|++++|...|++..+.... ++ ..+++.+...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666777777777777777665542110 11 236677777777888888888887777651 2212 234677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCCccHhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCCcchHHHHH
Q 043758 243 TLIHGFFKMGLFDKGWVLYSQMSDW----GFQPNMVTDLIMISNYCREGE---VDAALMLLNSKVSSNLAPSVHCYTVLI 315 (918)
Q Consensus 243 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ll 315 (918)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|..+++..... +.....+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHHHHH
Confidence 7777777888888888877776543 111122335567777777777 67777777665321 12334566777
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 043758 316 DALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~ 336 (918)
..|...|++++|...|++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887764
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=2.2e-11 Score=125.08 Aligned_cols=239 Identities=10% Similarity=-0.016 Sum_probs=128.3
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhc-------CCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC-----CC
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNA-------GVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK-----GL 164 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~ 164 (918)
..++..+...+...|++++|+..|+++.+. ..+....++..+...+...|++++|++.++...+.. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 335556666666666666666666665542 222334455666666666666666666666655410 11
Q ss_pred -CCCcccHHHHHHHHhccCchHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc----
Q 043758 165 -VPALHPYKSLFYALCKNIRTVEAESFAREMESQ------GF-YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT---- 232 (918)
Q Consensus 165 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 232 (918)
+.....+..+...+...|++++|...|++..+. +. +.....+..+...|...|++++|+..|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 112345555666666666776666666665543 11 112345666777777777777777777776543
Q ss_pred --CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCccH-------hhHHHHHHHHHhcCCHHHHHHH
Q 043758 233 --GCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDW-------GFQPNM-------VTDLIMISNYCREGEVDAALML 295 (918)
Q Consensus 233 --~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~ 295 (918)
+..|+ ..++..+..++...|++++|...++++.+. ...+.. ..+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11222 235666666777777777777777776642 111111 1122222233334445555555
Q ss_pred HHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 296 LNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
++...... +.+..++..+..+|...|++++|...|++..+
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555432 33456677788888888888888888877754
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=4.4e-09 Score=110.89 Aligned_cols=268 Identities=13% Similarity=-0.003 Sum_probs=188.3
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHhhchhcHHHHHHHHHHHhhcCCC-Cc----chhHHHHH
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKL----ACVSILRGLFAEEKFLEAFDYFIKICNAGVD-LN----CWSYNVLI 139 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~ 139 (918)
..++...|++++|...+++++...+..+.. +++.+...+...|++++|...+++....... .+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444577888999999998888765433322 5667778888999999999999987753211 11 12356777
Q ss_pred HHHHcCCChhHHHHHHHHHHhcC---CCC--C-CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCC----ChhhHHHH
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKK---GLV--P-ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYV----DKLMYTSL 209 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~---~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l 209 (918)
..+...|++++|.+.++...+.. +.. | ....+..+...+...|++++|...+++........ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 88889999999999999876521 221 2 13355667778889999999999999887643221 13467788
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCCh-hhHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCc---cHhhHHHHH
Q 043758 210 INGYCSNRNMKMAMRLFFRMLKTGCEPDS-YTCN-----TLIHGFFKMGLFDKGWVLYSQMSDWGFQP---NMVTDLIMI 280 (918)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 280 (918)
...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 88899999999999999988753212221 1222 22334678999999999999887653211 123456778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC----CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 281 SNYCREGEVDAALMLLNSKVSS----NLAPSV-HCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
..+...|++++|...++..... +.+++. .++..+..++...|++++|...|++...
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8899999999999999876542 211122 2556667788889999999999988765
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=3.2e-09 Score=112.03 Aligned_cols=315 Identities=12% Similarity=0.020 Sum_probs=202.1
Q ss_pred CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHC--CC--CCcHHHHHHHHHHH----Hc-CC------ChHHHHHHHH
Q 043758 502 KPSVAIYDAIIGHL--CKEKRILEAEDMFKRMLKA--GI--DPDEVFFTTMINGY----LQ-NR------KPIEACQLFE 564 (918)
Q Consensus 502 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~----~~-~~------~~~~A~~~~~ 564 (918)
.|+..+-+.+-..| ...+++++|..+++++.+. .+ .++...|-.++..- .. .. ......+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555555666666 7789999999999988652 12 22333334333321 11 11 1112225555
Q ss_pred HHHhCCCCCCc----hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043758 565 KMKENSVQPGS----YPYTALISGLVKKGMVDLGCMYLDRMLADG-FVP----NVVLYTALINHFLRAGEFEFASRLENL 635 (918)
Q Consensus 565 ~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 635 (918)
.+.....+.+. ..+......+...|++++|...|+...+.- ..+ ...++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 54332101010 112223444567888999998888887651 012 245677788888888888888888887
Q ss_pred HHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHH
Q 043758 636 MVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLK 715 (918)
Q Consensus 636 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 715 (918)
..+. +.
T Consensus 167 al~~-------------------------------------------------------------------------~~- 172 (378)
T 3q15_A 167 ALDI-------------------------------------------------------------------------YQ- 172 (378)
T ss_dssp HHHH-------------------------------------------------------------------------HH-
T ss_pred HHHH-------------------------------------------------------------------------HH-
Confidence 6531 00
Q ss_pred HHhcC-CCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 716 VKDIE-FMP-NLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE----GLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 716 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
+.+ ..+ ...+++.+..+|...|++++|...+++..+. +-.+ ...++..+..+|...|++++|+..+++..+
T Consensus 173 --~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 173 --NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp --TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 000 011 2457788889999999999999999887653 1111 123677788899999999999999999887
Q ss_pred C----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHccCC---hhhHHHHHHHHH
Q 043758 789 D----GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGF---VPK-KATYEHLLECFCANCL---SIPAFNMFKEMI 857 (918)
Q Consensus 789 ~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~ 857 (918)
. +.+....++..+..+|...|++++|...+++..+..- .|. ...+..+...+...++ ..+|+..+++..
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 2 2222367788899999999999999999999875311 122 2345555556677777 777777777521
Q ss_pred hCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 858 VHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 858 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
..+.....+..++..|...|++++|...+++..+.
T Consensus 331 --~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 331 --LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11333567788999999999999999999988653
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=1e-09 Score=102.31 Aligned_cols=167 Identities=13% Similarity=-0.034 Sum_probs=142.9
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKG 804 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 804 (918)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778888999999999999999887642 3356678888889999999999999999998852 3367888899999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEA 884 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 884 (918)
+...|++++|...++++.+. .+.+...+..+..++...|++++|...++++.... |.+...+..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998864 34567788888889999999999999999998876 77888999999999999999999
Q ss_pred HHHHHHHHhCC
Q 043758 885 QIVLDVMHKRG 895 (918)
Q Consensus 885 ~~~~~~~~~~~ 895 (918)
...++++.+..
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999988765
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=5.1e-10 Score=126.02 Aligned_cols=164 Identities=9% Similarity=0.051 Sum_probs=144.8
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTL 801 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 801 (918)
+...|+.+...|.+.|++++|+..|++.++. .|+ ...+..+..+|.+.|++++|++.|+++++. .| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 5688999999999999999999999999884 455 558888999999999999999999999885 44 46889999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
..+|...|++++|++.+++..+ +.| +...|..+..+|...|++++|+..++++++.. |.+..++..++.+|...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 9999999999999999999986 455 56688999999999999999999999999887 7889999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 043758 881 FHEAQIVLDVMHKR 894 (918)
Q Consensus 881 ~~~A~~~~~~~~~~ 894 (918)
+++|.+.++++.+.
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988887653
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=1.5e-08 Score=106.89 Aligned_cols=91 Identities=13% Similarity=-0.005 Sum_probs=55.3
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCch----hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHH
Q 043758 548 NGYLQNRKPIEACQLFEKMKENSVQPGSY----PYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYTALIN 618 (918)
Q Consensus 548 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 618 (918)
..+...|++++|...+++........+.. .+..+...+...|++++|...+++..+. +.. ....++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455667777777776666543111111 3444555666777777777777776543 110 01233566777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 043758 619 HFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 619 ~~~~~g~~~~a~~~~~~~~~ 638 (918)
.+...|++++|...+++..+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~ 121 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQ 121 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 78888999999888888764
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=6.5e-10 Score=125.11 Aligned_cols=166 Identities=13% Similarity=-0.038 Sum_probs=105.5
Q ss_pred CchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 043758 60 QSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLI 139 (918)
Q Consensus 60 ~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 139 (918)
+..+|+..++.++.+.|++++|+..|+++++.++. +..+|+.+..+|.+.|++++|+..|+++++.. +.+..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33444444555556666666666666666666543 45567777777777777777777777776664 44556677777
Q ss_pred HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCh
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNM 219 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 219 (918)
.++...|++++|++.|++..+. .+.+...|+.+..+|.+.|++++|...|++..+..+. +...|..+..+|...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 7777777777777777776651 1223456666666666667777777777666665433 556666666666666666
Q ss_pred HHHHHHHHHHH
Q 043758 220 KMAMRLFFRML 230 (918)
Q Consensus 220 ~~A~~~~~~m~ 230 (918)
++|.+.+++..
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=4.7e-10 Score=113.19 Aligned_cols=165 Identities=13% Similarity=0.013 Sum_probs=119.4
Q ss_pred HcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhc------C-CC
Q 043758 57 KFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNA------G-VD 129 (918)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~ 129 (918)
..|++++|+.+| ++|++++......+.+....++..+...|...|++++|+..|+++.+. + .+
T Consensus 13 ~~~~~~~A~~~~----------~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (283)
T 3edt_B 13 GLVPRGSAVPLC----------KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82 (283)
T ss_dssp CCSCSSSHHHHH----------HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred CCCCHHHHHHHH----------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch
Confidence 456677777775 566777777665443335668889999999999999999999988754 2 12
Q ss_pred CcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC-----C-CCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC------
Q 043758 130 LNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK-----G-LVPALHPYKSLFYALCKNIRTVEAESFAREMESQ------ 197 (918)
Q Consensus 130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------ 197 (918)
....++..+...+...|++++|++.|+++.+.. . .+.....+..+...+...|++++|...|++..+.
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 345678889999999999999999999887620 1 1223456677777788888888888888877654
Q ss_pred CCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 198 GFYV-DKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 198 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
+..| ...++..+...|...|++++|...|++..+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 245677777888888888888888887764
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.10 E-value=3e-09 Score=99.19 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=89.4
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043758 172 KSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM 251 (918)
Q Consensus 172 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 251 (918)
..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 33444445555555555555555443222 44455555555555666666666666555442 22344555555555566
Q ss_pred CChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 043758 252 GLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELY 331 (918)
Q Consensus 252 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (918)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...... +.+..++..+...+...|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666655543 3345555556666666666666666666655543 334455666666666666666666666
Q ss_pred HHHHh
Q 043758 332 KKMLA 336 (918)
Q Consensus 332 ~~~~~ 336 (918)
+++.+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.09 E-value=3.2e-09 Score=102.85 Aligned_cols=190 Identities=8% Similarity=-0.032 Sum_probs=83.2
Q ss_pred hhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHH
Q 043758 693 KSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN-QVTFCILINGHI 771 (918)
Q Consensus 693 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 771 (918)
+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+. .|+ ...+..+..+|.
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHH
Confidence 33344444445555555555554444332234444444444444555555555555544442 222 223444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 043758 772 AAGEIDQAIGLFNQMNADGCVPDK-------TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK---KATYEHLLECFC 841 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 841 (918)
..|++++|+..+++..+... .+. ..|..+...+...|++++|+..+++..+ ..|+ ...+..+..++.
T Consensus 88 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHH
Confidence 55555555555554444210 112 2344444444444555555555544443 2333 123333333333
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
..| ...++++...+ +.+...+ ........+.+++|...+++..+..
T Consensus 165 ~~~-----~~~~~~a~~~~-~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 165 NNG-----ADVLRKATPLA-SSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHGGGT-TTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHhcc-cCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 222 12223332222 1121111 1222233344499999999998876
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.09 E-value=2.9e-09 Score=112.33 Aligned_cols=232 Identities=11% Similarity=-0.011 Sum_probs=148.2
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhcCC--C---CcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC-----cccH
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNAGV--D---LNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA-----LHPY 171 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~ 171 (918)
.....+...|++++|+..|+++..... + ....++..+...+...|+++.|+..+++..+...-.++ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888887764321 1 12346777777888888888888888776642111111 3456
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHh-----cCCCCChhhH
Q 043758 172 KSLFYALCKNIRTVEAESFAREMESQ----GFY-VDKLMYTSLINGYCSNRNMKMAMRLFFRMLK-----TGCEPDSYTC 241 (918)
Q Consensus 172 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 241 (918)
+.+..+|...|++++|...|++..+. +.. ....+++.+...|...|++++|+..|++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 66777778888888888887776552 111 0124567777788888888888888887765 31 2224566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC----CccHhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCCcchHHHH
Q 043758 242 NTLIHGFFKMGLFDKGWVLYSQMSDWGF----QPNMVTDLIMISNYCREGE---VDAALMLLNSKVSSNLAPSVHCYTVL 314 (918)
Q Consensus 242 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l 314 (918)
..+...+.+.|++++|...+++..+... +.....+..+...|...|+ +.+|...++.... .+.....+..+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~l 342 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHH
Confidence 7777778888888888888887765421 1223345556666667777 6666666665321 11123345667
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 043758 315 IDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~ 336 (918)
...|...|++++|...|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7778888888888888877654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=7.8e-09 Score=100.09 Aligned_cols=195 Identities=10% Similarity=-0.052 Sum_probs=124.3
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
++..+......+...|++++|+..|+++.+...+++...+..+..++...|++++|++.|+...+ . .+.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-K-NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T-TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-h-CcchHHHHHHHH
Confidence 45566677777777777777777777777665335666666677777777777777777777765 1 122345666677
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC---hhhHHHHH
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDK-------LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD---SYTCNTLI 245 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll 245 (918)
.++...|++++|...|++..+..+. +. ..|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 7777777777777777777765433 34 34667777777788888888888887765 444 34555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 246 HGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 246 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
.++... +..+++.+...+ ..+...+.... ....+.+++|...|+...+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 555433 334455555443 22333343332 234466788888888877754
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=1.9e-09 Score=108.58 Aligned_cols=170 Identities=15% Similarity=0.076 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHc------CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKRE------GLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNAD------GC 791 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~ 791 (918)
..++..+...|...|++++|+..+++..+. +-.|. ..++..+..+|...|++++|+..++++.+. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555555555555555554432 11121 224444555555555555555555554432 00
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhC----
Q 043758 792 VP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR------GFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVH---- 859 (918)
Q Consensus 792 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 859 (918)
.| ....+..+...|...|++++|...+++..+. +-.| ...++..+..++.+.|++++|...+++++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 11 2244444555555555555555555554432 0012 1223444444555555555555555554432
Q ss_pred --------------------------------------------CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 860 --------------------------------------------DHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 860 --------------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
..+....++..++.+|...|++++|...+++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11333567889999999999999999999988764
No 87
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=1.6e-07 Score=93.06 Aligned_cols=246 Identities=10% Similarity=-0.036 Sum_probs=174.4
Q ss_pred chhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh--cHHHHHHHHHHHhhcCCCCcchhHHHH
Q 043758 61 SQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEE--KFLEAFDYFIKICNAGVDLNCWSYNVL 138 (918)
Q Consensus 61 ~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (918)
+.++...|...+.+....++|+.+++.++..++. +..+|+....++...| ++++++.+++.+.... +-+..+|+..
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R 109 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHH
Confidence 3455555555555556667899999999998865 6678998888888888 9999999999999876 5577778777
Q ss_pred HHHH----HcC---CChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH--HHHHHHHHHHhCCCCCChhhHHHH
Q 043758 139 IDGL----CYK---GFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV--EAESFAREMESQGFYVDKLMYTSL 209 (918)
Q Consensus 139 ~~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l 209 (918)
...+ ... +++++++++++.+.+. .+-+...|+...-++.+.|.++ ++...++.+.+..+. |...|+-.
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R 186 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHR 186 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 6666 555 7888999999998872 3445667776666677777777 888888888887665 77777766
Q ss_pred HHHHhcCCC------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh-HHHHHHHHHHhCC--CCccHhhHHHHH
Q 043758 210 INGYCSNRN------MKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD-KGWVLYSQMSDWG--FQPNMVTDLIMI 280 (918)
Q Consensus 210 i~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~ 280 (918)
.......+. ++++++.++++.... +-|...|+.+...+.+.|... ....+..++.+.+ -+.+...+..+.
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 666666665 778888888887764 345667777777777777643 3455666555432 123556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC-CCCCCcchHHH
Q 043758 281 SNYCREGEVDAALMLLNSKVSS-NLAPSVHCYTV 313 (918)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 313 (918)
..|.+.|+.++|.++++.+.+. + |.....|+.
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~D-pir~~yW~~ 298 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYN-PIRSNFWDY 298 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC-GGGHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 7777778888888888777652 3 333444443
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=8.6e-08 Score=93.64 Aligned_cols=240 Identities=12% Similarity=0.009 Sum_probs=147.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|.+..++.- +.+..+........-+.++|...|++... ....|....+..+...+ . ++ |+
T Consensus 24 fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~-~~---a~ 86 (310)
T 3mv2_B 24 YYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-D-TK---NI 86 (310)
T ss_dssp HTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-T-TT---CC
T ss_pred HHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-c-cc---HH
Confidence 456777776663 22222121222333455777777766531 11123333333333333 2 22 67
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGF-YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
..|+++.. .+ .++...+..+..++...|++++|.+++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 87 EELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777765 22 34444555677778888888888888888877654 12566777888888888888888888888877
Q ss_pred cCCCC-----ChhhHHHHHHHHH--hcC--ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 232 TGCEP-----DSYTCNTLIHGFF--KMG--LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 232 ~~~~p-----~~~~~~~ll~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
. .| +..+...+..+++ ..| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|++.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 55 2455555555532 223 788888888888665 444333344455788888888888888866542
Q ss_pred C---------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 303 N---------LAPSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 303 ~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
. -+.+..+...+|......|+ +|.+++.++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 0 03455666555555555676 778888888774
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=1.9e-08 Score=101.26 Aligned_cols=159 Identities=7% Similarity=-0.132 Sum_probs=87.2
Q ss_pred HhcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCC-c----chhHHHHHHHH
Q 043758 73 VALGNIEDALRHFDRLISK----NIVP-IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDL-N----CWSYNVLIDGL 142 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~ 142 (918)
...|++++|...|.++.+. +..+ ...+|+.+..+|...|++++|+..|++..+..... + ..+++.+...|
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 127 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5566666666666665543 2111 14578888888888899999988888876532110 1 23566666666
Q ss_pred HcC-CChhHHHHHHHHHHhcCCCCCC----cccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChh------hHHHHHH
Q 043758 143 CYK-GFLDEVLEVVNIMRKKKGLVPA----LHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKL------MYTSLIN 211 (918)
Q Consensus 143 ~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~ 211 (918)
... |++++|++.|++..+...-..+ ..+++.+...+.+.|++++|...|++..+..+..... .|..+..
T Consensus 128 ~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 207 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 664 7777777777766541100000 1234445555555555555555555555543221110 2344444
Q ss_pred HHhcCCChHHHHHHHHHHHh
Q 043758 212 GYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~ 231 (918)
++...|++++|+..|++..+
T Consensus 208 ~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 208 CQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555443
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=5.9e-08 Score=96.08 Aligned_cols=178 Identities=10% Similarity=0.058 Sum_probs=85.7
Q ss_pred hhhhhhHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC--CCcchhHHHHHHHH
Q 043758 67 LYQNDFVALGNIEDALRHFDRLISKNIVPI--KLACVSILRGLFAEEKFLEAFDYFIKICNAGV--DLNCWSYNVLIDGL 142 (918)
Q Consensus 67 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 142 (918)
..+..+.+.|++++|...|+.+++..+... ..++..++.+|...|++++|+..|+++.+... +....++..+..++
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 334444555666666666666555443210 34555555555666666666666665555421 11123444455555
Q ss_pred Hc--------CCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043758 143 CY--------KGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGY 213 (918)
Q Consensus 143 ~~--------~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 213 (918)
.. .|++++|+..|+.+.+. .|+. .....+.. +..+... ....+..+...|
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~la~~~ 158 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQK--------------IRELRAK----LARKQYEAARLY 158 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHH--------------HHHHHHH----HHHHHHHHHHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHH--------------HHHHHHH----HHHHHHHHHHHH
Confidence 55 55555555555555541 1221 11111100 0000000 011134555666
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 043758 214 CSNRNMKMAMRLFFRMLKTGCEPD----SYTCNTLIHGFFKM----------GLFDKGWVLYSQMSDW 267 (918)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~ 267 (918)
...|++++|+..|+++.+. .|+ ...+..+..++... |++++|...++.+.+.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6677777777777776654 232 22445555555544 5566666666666554
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.88 E-value=3.4e-08 Score=99.47 Aligned_cols=54 Identities=13% Similarity=0.026 Sum_probs=28.5
Q ss_pred hhchhcHHHHHHHHHHHhhc----CCCC-cchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 107 LFAEEKFLEAFDYFIKICNA----GVDL-NCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
|...|++++|+..|++..+. +-++ ...+|+.+..+|...|++++|+..|++..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556666666666555432 1111 123555566666666666666666655544
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=4.9e-08 Score=85.07 Aligned_cols=130 Identities=12% Similarity=0.094 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA 842 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 842 (918)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445556666666666666666665542 1244556666666666667777777666665431 2344556666666777
Q ss_pred cCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 843 NCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 843 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.|++++|...++++.... |.+...+..++.+|...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 777777777777766654 5566677777777777777777777777776543
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=3.9e-07 Score=89.02 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=25.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 730 DIFLLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 730 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
.+..++...|++++|++++++.+..+-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444455555555444443322101 222333444444444555555555544444
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=2.6e-08 Score=94.40 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=47.3
Q ss_pred hHhcCChHHHHHHHHHHHhCCCCCChhhHHH----------------HHHHhhchhcHHHHHHHHHHHhhcCCCCcchhH
Q 043758 72 FVALGNIEDALRHFDRLISKNIVPIKLACVS----------------ILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSY 135 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 135 (918)
+...|++++|...|+.+++.++. ++.+|.. +..+|.+.|++++|+..|++.++.. |.+...+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 91 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCL 91 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 36677777777777777765532 2334444 4555555555555555555555443 3344455
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 136 NVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..+..++...|++++|++.|+++.+
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555555544
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=5.2e-08 Score=96.52 Aligned_cols=167 Identities=10% Similarity=0.011 Sum_probs=107.0
Q ss_pred ccHHHHHHHHHHcCCchhHHhhhhh--------------------hhHhcCChHHHHHHHHHHHhCCCC-C-ChhhHHHH
Q 043758 46 GSYSALMKKLIKFGQSQSALLLYQN--------------------DFVALGNIEDALRHFDRLISKNIV-P-IKLACVSI 103 (918)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~a~~~~~~--------------------~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l 103 (918)
..+..+...+.+.|++++|+..|.. ++.+.|++++|...|+++++..+. | ...++..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3344445555555555555555544 448999999999999999987642 2 24577888
Q ss_pred HHHhhc--------hhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 104 LRGLFA--------EEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 104 ~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
..++.. .|++++|+..|+++++.. +.+......+.... .+-.... ..+..+.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~----------~~~~~~~---------~~~~~la 155 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIR----------ELRAKLA---------RKQYEAA 155 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH----------HHHHHHH---------HHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHH----------HHHHHHH---------HHHHHHH
Confidence 888988 999999999999999875 33333332221110 0001111 1134456
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHhcC----------CChHHHHHHHHHHHhc
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYV--DKLMYTSLINGYCSN----------RNMKMAMRLFFRMLKT 232 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 232 (918)
.+|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 66777777777777777777653321 234566666666654 7778888888887765
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=9.4e-08 Score=83.23 Aligned_cols=128 Identities=19% Similarity=0.292 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444444444455555555555444332 1233344444444444555555555555544432 2234444445555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 286 EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
.|++++|...++.+.... +.+..++..+...+...|++++|...|+++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544432 22344445555555555555555555555443
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.82 E-value=5.5e-08 Score=92.12 Aligned_cols=180 Identities=12% Similarity=-0.062 Sum_probs=84.7
Q ss_pred hhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 043758 98 LACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYA 177 (918)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~ 177 (918)
..+...+..+...|++++|+..|+++.... |.+...|... ...... .........+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~~---------------~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKNS---------------EISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTTS---------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcchh---------------hhhHHHHHHHHHH
Confidence 345556667788899999999999988764 3334444440 000000 0000111224444
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--hh
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL--FD 255 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~ 255 (918)
+.+.|++++|...|++..+..+. +...|..+..+|...|++++|+..|++..+.. +.+..++..+..++...|. ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 55555555555555555554332 44555555555555555555555555555442 1223344444444433332 22
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
.+...++.... ..|....+..+..++...|++++|...|++..+.
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 23333333321 1222222233334444455555555555555543
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=1.8e-07 Score=88.72 Aligned_cols=176 Identities=10% Similarity=-0.074 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC----ChhHHHHHH
Q 043758 80 DALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG----FLDEVLEVV 155 (918)
Q Consensus 80 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 155 (918)
+|.++|....+.+ ++.++..+...|...+++++|+.+|++..+.+ +...+..+...|.. + +.++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777765 66677788888888888888888888887765 45567777777766 5 777888888
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHhc----cCchHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhc----CCChHHHHHHH
Q 043758 156 NIMRKKKGLVPALHPYKSLFYALCK----NIRTVEAESFAREMESQGFY-VDKLMYTSLINGYCS----NRNMKMAMRLF 226 (918)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 226 (918)
+...+ . .+...+..|..+|.. .+++++|...|++..+.+.. .++..+..|...|.. .+++++|+.+|
T Consensus 77 ~~A~~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVE-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHH-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHH-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77765 2 245556666666665 66777777777777766431 015666667766766 66777777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCC
Q 043758 227 FRMLKTGCEPDSYTCNTLIHGFFKM-G-----LFDKGWVLYSQMSDWG 268 (918)
Q Consensus 227 ~~m~~~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 268 (918)
++..+. ..+...+..|...|... | ++++|..+|+...+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777654 22334555555555432 2 6677777777766655
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=2.1e-07 Score=89.45 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=51.1
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 835 HLLECFCANCLSIPAFNMFKEMIVHDHVPCL---SNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 835 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+...+.+.|++++|...++++++.. |.++ .++..++.+|.+.|++++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 34557889999999999999998764 4443 679999999999999999999999998876
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=1.6e-08 Score=89.68 Aligned_cols=142 Identities=10% Similarity=-0.067 Sum_probs=108.3
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC
Q 043758 732 FLLLCGVGRMDDAYDHFQMMKREGLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAG 809 (918)
Q Consensus 732 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 809 (918)
...+...|++++|+..++..... .|+ ...+..+...|...|++++|++.|++.++. .| +...|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 44555667888888888877652 343 335566788888999999999999988885 33 5688888888999999
Q ss_pred ChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHH-HHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 810 RLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNM-FKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
++++|+..+++..+ +.| +...+..+..+|.+.|++++|.+. ++++++.. |.++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999988886 455 566788888888889988876654 58888776 7788888888888888775
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=1.3e-06 Score=86.59 Aligned_cols=249 Identities=9% Similarity=0.012 Sum_probs=183.9
Q ss_pred hhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcC--ChHHHHH
Q 043758 6 RGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALG--NIEDALR 83 (918)
Q Consensus 6 ~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g--~~~~A~~ 83 (918)
...+.++...|..+.+...-..+|+...+.+ +..++.+-.|...-+.++...| ++++++.
T Consensus 29 ~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~------------------L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~ 90 (306)
T 3dra_A 29 DEDYKQIMGLLLALMKAEEYSERALHITELG------------------INELASHYTIWIYRFNILKNLPNRNLYDELD 90 (306)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHTCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH------------------HHHCcHHHHHHHHHHHHHHHcccccHHHHHH
Confidence 3456677777777776666655566554444 3444444445444444555556 8999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHh----hch---hcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh--HHHHH
Q 043758 84 HFDRLISKNIVPIKLACVSILRGL----FAE---EKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD--EVLEV 154 (918)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~ 154 (918)
+++.++..++. +..+|+....++ ... +++++++.+++.+.+.. +-|..+|+...-++.+.|.++ ++++.
T Consensus 91 ~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 91 WCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp HHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 99999998876 666888666665 444 78999999999999887 668889998888888899988 99999
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhccCc------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHH-HHHHHH
Q 043758 155 VNIMRKKKGLVPALHPYKSLFYALCKNIR------TVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM-AMRLFF 227 (918)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 227 (918)
++.+++. -+-|...|+....++...++ ++++...++.+....+. |...|+-+-..+.+.|+... +..+..
T Consensus 169 ~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 169 VDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 9999972 34566677776666666666 89999999999988766 89999999888888887544 555666
Q ss_pred HHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCccHhhHHH
Q 043758 228 RMLKTG--CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSD-WGFQPNMVTDLI 278 (918)
Q Consensus 228 ~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~ 278 (918)
++.+.+ -..+...+..+..++.+.|+.++|.++++.+.+ .+ +.....|+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D-pir~~yW~~ 298 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN-PIRSNFWDY 298 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-GGGHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 665432 134667888899999999999999999999986 33 333444443
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=2.5e-07 Score=88.87 Aligned_cols=176 Identities=7% Similarity=-0.022 Sum_probs=114.4
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcch---hHHHHHHHHH
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPI--KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCW---SYNVLIDGLC 143 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 143 (918)
+..+...|++++|...|+.+++..+... ..++..++.++.+.|++++|+..|+++.+.. |.+.. .+..+..++.
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHH
Confidence 3445778888888888998887654321 3577788889999999999999999988765 22222 4444554444
Q ss_pred c------------------CCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChh
Q 043758 144 Y------------------KGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKL 204 (918)
Q Consensus 144 ~------------------~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 204 (918)
. .|+.++|+..|+.+.+ ..|+. ..+.+..... .+...+ ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~----------~~~~~~--------~~ 148 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLV----------FLKDRL--------AK 148 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHH----------HHHHHH--------HH
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHH----------HHHHHH--------HH
Confidence 3 4566666666666665 22322 2221111100 000000 01
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS----YTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
....+...|...|++++|+..|+++.+. .|+. ..+..+..++.+.|++++|.+.++.+...+
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1234567788899999999999998876 3442 357778888899999999999999887764
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=8.3e-06 Score=87.96 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
..|...+....+.+..+.|..+|... .. |. .++...+. ++.. + +...++.+.|..+|
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~-~~~~v~i~-~A~l---E--------------~~~~~d~~~ar~if 343 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN---EG-VGPHVFIY-CAFI---E--------------YYATGSRATPYNIF 343 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC-CCHHHHHH-HHHH---H--------------HHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC-CChHHHHH-HHHH---H--------------HHHCCChHHHHHHH
Confidence 45666666666667788888888777 21 22 12221111 0000 0 00112456666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMK 567 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 567 (918)
+...+.-+ .++..+...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.
T Consensus 344 e~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 344 SSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66655422 234444555555566666666666666652 234445555544444555555555555544
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=7e-08 Score=109.63 Aligned_cols=174 Identities=10% Similarity=-0.044 Sum_probs=135.5
Q ss_pred HcCCChhHHHHHHHHHH--------hcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 043758 143 CYKGFLDEVLEVVNIMR--------KKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYC 214 (918)
Q Consensus 143 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 214 (918)
...|++++|++.++... + ..+.+...+..+..++.+.|++++|...|++..+..+. +...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 67889999999999887 3 12345567778888888999999999999998886554 7788888888999
Q ss_pred cCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 043758 215 SNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALM 294 (918)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 294 (918)
..|++++|+..|++..+.. +-+...|..+..++...|++++ .+.|++..+.+ +.+...+..+..+|.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988763 2245678888888889999999 99999988775 5567788888889999999999999
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCC
Q 043758 295 LLNSKVSSNLAPSVHCYTVLIDALYKHNR 323 (918)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 323 (918)
.|++..+.+ +.+...|..+..++...++
T Consensus 556 ~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 999888765 3345667777777766554
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.75 E-value=1.5e-05 Score=86.05 Aligned_cols=77 Identities=9% Similarity=0.109 Sum_probs=48.4
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 043758 740 RMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFY 819 (918)
Q Consensus 740 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 819 (918)
+.+.|..+|+...+.- +-+...+...++-....|+.+.|..+|+.+.+ ....|...+..-...|+.+.+..+++
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5777777777766542 11222344455555567777777777777621 45667776666666777777777777
Q ss_pred HHH
Q 043758 820 SMH 822 (918)
Q Consensus 820 ~~~ 822 (918)
++.
T Consensus 409 ~~~ 411 (493)
T 2uy1_A 409 QKM 411 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.75 E-value=9.3e-08 Score=87.78 Aligned_cols=163 Identities=12% Similarity=0.044 Sum_probs=116.4
Q ss_pred cHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-H
Q 043758 170 PYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHG-F 248 (918)
Q Consensus 170 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~ 248 (918)
.+..+...+.+.|++++|...|++..+..+. +...+..+..+|...|++++|+..|++..+. .|+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 4455666677788888888888877665333 6677888888888888888888888887665 3343332222211 2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CcchHHHHHHHHHhcCChhHH
Q 043758 249 FKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAP-SVHCYTVLIDALYKHNRLMEV 327 (918)
Q Consensus 249 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a 327 (918)
...+...++...+++..+.. +.+...+..+...+...|++++|...|+.+.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233345778888887764 4467788888888999999999999999888765222 245788888899999999999
Q ss_pred HHHHHHHHh
Q 043758 328 DELYKKMLA 336 (918)
Q Consensus 328 ~~~~~~~~~ 336 (918)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887653
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.75 E-value=8.2e-08 Score=109.06 Aligned_cols=174 Identities=7% Similarity=-0.167 Sum_probs=144.1
Q ss_pred hchhcHHHHHHHHHHHh--------hcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q 043758 108 FAEEKFLEAFDYFIKIC--------NAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALC 179 (918)
Q Consensus 108 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 179 (918)
...|++++|+..++++. +.. +.+...+..+..++...|++++|++.|+++.+. .+.+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 77899999999999998 443 556778999999999999999999999999872 2345678888889999
Q ss_pred ccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 043758 180 KNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWV 259 (918)
Q Consensus 180 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 259 (918)
..|++++|...|++..+..+. +...|..+..+|...|++++ +..|++..+.+ +.+...|..+..++...|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987654 77889999999999999999 99999998864 3356688999999999999999999
Q ss_pred HHHHHHhCCCCccHhhHHHHHHHHHhcCC
Q 043758 260 LYSQMSDWGFQPNMVTDLIMISNYCREGE 288 (918)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 288 (918)
.|+++.+.+ +.+...+..+..++...++
T Consensus 556 ~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 999998764 3346677777777766554
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=6e-08 Score=86.00 Aligned_cols=124 Identities=8% Similarity=-0.158 Sum_probs=61.2
Q ss_pred HHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCc
Q 043758 104 LRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIR 183 (918)
Q Consensus 104 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 183 (918)
...+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+. .+.+..+|..+..+|.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 344455566666666665554432 223334445555555566666666666655541 12233444555555555555
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHH-HHHHHh
Q 043758 184 TVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRL-FFRMLK 231 (918)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~ 231 (918)
+++|...|++..+..+. +...|..+...|...|++++|... +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555555554332 444555555555555555444333 344444
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.74 E-value=5.9e-08 Score=89.12 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=97.5
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHH-
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYA- 177 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~- 177 (918)
.+......+...|++++|+..|+++.+.. |.+...+..+...+...|++++|+..|+.+.+ ..|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHH
Confidence 44555666677777777777777766554 34556667777777777777777777777655 22222222111111
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhH
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEP-DSYTCNTLIHGFFKMGLFDK 256 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 256 (918)
+...+...+|...+++..+..+. +...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 11212223456667666665433 56677777777777777777777777777653222 23466667777777777777
Q ss_pred HHHHHHHHH
Q 043758 257 GWVLYSQMS 265 (918)
Q Consensus 257 a~~~~~~~~ 265 (918)
|...|++.+
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=1.3e-07 Score=94.63 Aligned_cols=163 Identities=12% Similarity=-0.010 Sum_probs=98.6
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHH-H
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKS-L 174 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l 174 (918)
+...+..+...+...|++++|+..|+++.... +.+...+..+...+.+.|++++|+..++.+.. ..|+...... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHHH
Confidence 34455566666667777777777777766664 44556666667777777777777777776654 2333322221 1
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhc
Q 043758 175 FYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD---SYTCNTLIHGFFKM 251 (918)
Q Consensus 175 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~ 251 (918)
...+...++.++|...+++.....+. +...+..+...|...|++++|+..|.++.+.. |+ ...+..++..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHc
Confidence 22244555666666666666665443 56666666677777777777777777766652 32 34566666666666
Q ss_pred CChhHHHHHHHHHH
Q 043758 252 GLFDKGWVLYSQMS 265 (918)
Q Consensus 252 g~~~~a~~~~~~~~ 265 (918)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 66666666665543
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=1.9e-07 Score=93.43 Aligned_cols=167 Identities=8% Similarity=-0.037 Sum_probs=129.8
Q ss_pred CCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHH-
Q 043758 165 VPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNT- 243 (918)
Q Consensus 165 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~- 243 (918)
+.+...+..+...+.+.|++++|...|++..+..+. +...+..+...|...|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 344556667777788889999999999988887554 7778888999999999999999999888765 455443222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--cchHHHHHHHHHhc
Q 043758 244 LIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPS--VHCYTVLIDALYKH 321 (918)
Q Consensus 244 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~ 321 (918)
....+...++.+.|...+++..... +.+...+..+...|...|++++|...|.++.+.. +.+ ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc
Confidence 2223667778888888888888775 5667888889999999999999999999988765 222 56788899999999
Q ss_pred CChhHHHHHHHHHHh
Q 043758 322 NRLMEVDELYKKMLA 336 (918)
Q Consensus 322 g~~~~a~~~~~~~~~ 336 (918)
|+.++|...|++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999988887653
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=9.5e-07 Score=83.73 Aligned_cols=176 Identities=15% Similarity=0.041 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC----CHHHHHHHH
Q 043758 708 TVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAG----EIDQAIGLF 783 (918)
Q Consensus 708 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 783 (918)
+|.+.|++..+.| ++..+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556666666553 77888889999999999999999999998865 45567777777777 6 899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc----cCChhhHHHH
Q 043758 784 NQMNADGCVPDKTVYNTLLKGLCQ----AGRLSHVFSVFYSMHKRGFVPK---KATYEHLLECFCA----NCLSIPAFNM 852 (918)
Q Consensus 784 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~~~~~~A~~~ 852 (918)
++..+.| ++..+..+...|.. .+++++|+..+++..+.| |+ ...+..|...|.. .+++++|...
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9998854 56777888888877 789999999999998643 43 6677788888888 7899999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCCC
Q 043758 853 FKEMIVHDHVPCLSNCNWLLNILCQE-K-----HFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 897 (918)
+++.... +.++.++..|+.+|..- | ++++|...+++..+.|..
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999886 45667899999999754 3 999999999999998854
No 113
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.7e-06 Score=86.38 Aligned_cols=188 Identities=9% Similarity=-0.071 Sum_probs=144.4
Q ss_pred CchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh-cHHHHHHHHHHHhhcCCCCcchhHHHH
Q 043758 60 QSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEE-KFLEAFDYFIKICNAGVDLNCWSYNVL 138 (918)
Q Consensus 60 ~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (918)
++.++...+..++.+.+..++|+++++.++..++. +..+|+....++...| .+++++.+++.+.... +-+..+|+..
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR 129 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHR 129 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45677777777777777888999999999998866 6778998888888888 5999999999999886 5577888888
Q ss_pred HHHHHcC-C-ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH--------HHHHHHHHHHhCCCCCChhhHHH
Q 043758 139 IDGLCYK-G-FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV--------EAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 139 ~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
...+.+. + +.++++++++.+.+ ..+-+...|+...-++.+.|.++ ++...++++.+..+. |...|+-
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~ 206 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGW 206 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 8777776 7 88999999999986 23445666766666666666666 888899998887665 7888888
Q ss_pred HHHHHhcCCC-------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043758 209 LINGYCSNRN-------MKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 209 li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 253 (918)
....+.+.+. ++++++.++++.... +-|...|+.+-..+.+.|.
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 8877777775 678888888887763 3355677766655555554
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.67 E-value=2e-07 Score=104.29 Aligned_cols=154 Identities=8% Similarity=-0.161 Sum_probs=107.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHH
Q 043758 75 LGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEV 154 (918)
Q Consensus 75 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (918)
.|++++|...|+++.+.++. +..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46778888888888876644 56788888888999999999999999988775 45677888888888889999999999
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC---CChHHHHHHHHHHHh
Q 043758 155 VNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN---RNMKMAMRLFFRMLK 231 (918)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 231 (918)
|++..+. .+.+...+..+..++.+.|++++|...|++..+..+. +...+..+...+... |++++|.+.+++..+
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9888872 2334567777888888888888888888888776443 667788888888888 888888888888877
Q ss_pred cC
Q 043758 232 TG 233 (918)
Q Consensus 232 ~~ 233 (918)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 63
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.65 E-value=8.4e-07 Score=89.96 Aligned_cols=129 Identities=14% Similarity=-0.025 Sum_probs=75.2
Q ss_pred hhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhh---hHhcCChHH
Q 043758 4 INRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQND---FVALGNIED 80 (918)
Q Consensus 4 ~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~---~~~~g~~~~ 80 (918)
+.+|++.+|..+++++.+..+.. + .++ .+++++|...|.++ +...|++++
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~-----~------~~~----------------~~~~~~A~~~~~~a~~~~~~~g~~~~ 54 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTS-----F------MKW----------------KPDYDSAASEYAKAAVAFKNAKQLEQ 54 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCC-----S------SSC----------------SCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHHHcccc-----c------cCC----------------CCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 46899999999999986654420 0 000 24455555555443 356677777
Q ss_pred HHHHHHHHHhCCC---CC--ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC---CC--cchhHHHHHHHHHcCCChhH
Q 043758 81 ALRHFDRLISKNI---VP--IKLACVSILRGLFAEEKFLEAFDYFIKICNAGV---DL--NCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 81 A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~ 150 (918)
|...|.++.+... .+ ...+|+.+..+|...|++++|+..|++..+... .+ -..+++.+...|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 7777776654321 01 133666777777777888888777777654311 11 12345555555655 66666
Q ss_pred HHHHHHHHHh
Q 043758 151 VLEVVNIMRK 160 (918)
Q Consensus 151 A~~~~~~~~~ 160 (918)
|++.|++..+
T Consensus 134 A~~~~~~Al~ 143 (307)
T 2ifu_A 134 AVHLYQQAAA 143 (307)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=4e-07 Score=92.36 Aligned_cols=95 Identities=7% Similarity=-0.059 Sum_probs=50.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCC---C--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCcc-Hh
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCE---P--DSYTCNTLIHGFFKMGLFDKGWVLYSQMSDW----GFQPN-MV 274 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~ 274 (918)
+++.+...|.. |++++|+..|++..+.... + ...+++.+...+...|++++|...|++..+. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 45555555555 6666666666655432100 0 0234555566666666666666666665542 11111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 275 TDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 275 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
.+..++..+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555555666667777776666665
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.58 E-value=5.6e-07 Score=100.59 Aligned_cols=164 Identities=10% Similarity=-0.040 Sum_probs=119.8
Q ss_pred CCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHH
Q 043758 703 NGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIG 781 (918)
Q Consensus 703 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 781 (918)
.|++++|.+.+++..+.. +.+...|..+...|...|++++|...+++..+. .| +...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478888999998776443 345788999999999999999999999999875 34 45678888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---CChhhHHHHHHHHHh
Q 043758 782 LFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN---CLSIPAFNMFKEMIV 858 (918)
Q Consensus 782 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 858 (918)
.+++..+.. +.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |++++|...++++++
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999998852 2256888899999999999999999999988642 33566788888888888 999999999999988
Q ss_pred CCCCCCcccHHHHH
Q 043758 859 HDHVPCLSNCNWLL 872 (918)
Q Consensus 859 ~~~~~~~~~~~~l~ 872 (918)
.+ |.+...+..++
T Consensus 157 ~~-p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QG-VGAVEPFAFLS 169 (568)
T ss_dssp HT-CCCSCHHHHTT
T ss_pred cC-CcccChHHHhC
Confidence 76 66677776666
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=1.3e-06 Score=83.15 Aligned_cols=125 Identities=8% Similarity=-0.090 Sum_probs=66.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC 806 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 806 (918)
.+..+...+...|++++|+..|++.. .|+...+..+..+|...|++++|+..|++..+.. +.+...|..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34445555556666666666665542 3455555556666666666666666666655532 123455555666666
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCChhhHHHHHHHHH
Q 043758 807 QAGRLSHVFSVFYSMHKRGFVPKK----------------ATYEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 807 ~~g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
..|++++|+..+++..+.. +.+. ..+..+..++.+.|++++|...++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666666666666655421 1111 344444445555555555555555554
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=8.4e-07 Score=77.95 Aligned_cols=98 Identities=7% Similarity=-0.045 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHH
Q 043758 795 KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLN 873 (918)
Q Consensus 795 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 873 (918)
...+..+...+.+.|++++|+..|++..+ +.| +...|..+..++...|++++|+..+++++... |.++.+|..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 46677778888888888888888888886 345 56678888888888889999999888888877 778888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 043758 874 ILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 874 ~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
+|.+.|++++|...+++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998888876
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=4.5e-06 Score=83.99 Aligned_cols=164 Identities=10% Similarity=-0.004 Sum_probs=121.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcC-CCCcHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHH
Q 043758 730 DIFLLLCGVGRMDDAYDHFQMMKREG-LRPNQV----TFCILINGHIAAGEIDQAIGLFNQMNADGC-VPD----KTVYN 799 (918)
Q Consensus 730 ~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~ 799 (918)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+++..... .++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999887642 122321 233466667778899999999999988422 222 24688
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHccCChhhHHHHHHHHHhCC----CCCC-cccH
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHK----R-GFVPKK-ATYEHLLECFCANCLSIPAFNMFKEMIVHD----HVPC-LSNC 868 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-~~~~ 868 (918)
.+..+|...|++++|...++++.+ . +..+.. .++..+..+|.+.|++++|...+++.+... ..+. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999998873 1 122222 367888889999999999999999886432 1122 6688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHh
Q 043758 869 NWLLNILCQEKH-FHEAQIVLDVMHK 893 (918)
Q Consensus 869 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 893 (918)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988765
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=5.2e-07 Score=86.94 Aligned_cols=209 Identities=10% Similarity=-0.044 Sum_probs=93.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHH-------HHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC
Q 043758 74 ALGNIEDALRHFDRLISKNIVPIKLACVSI-------LRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG 146 (918)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 146 (918)
..++.+.|.+.|.++.+.++. ...+|..+ ..++...++..+++..+...... .|+......- ..|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~-----~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIA-----IGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEE-----CCT
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--Chhhhhhhhc-----cCC
Confidence 456777777777777777654 55577766 45666666666666665554432 2211100000 000
Q ss_pred ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 043758 147 FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLF 226 (918)
Q Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 226 (918)
-+ .. +. ..+..-......+..++...|++++|.++|+.+...++ +......+...+.+.+++++|+..|
T Consensus 90 ~y-------~~-~~-~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 90 LY-------GD-IT-YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp TT-------CC-CE-EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cc-------cc-cc-cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00 00 00 00000011122233344444555555555554444321 1113334444555555555555555
Q ss_pred HHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 227 FRMLKTGCEPD--SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 227 ~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 159 ~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 159 KSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5333210 010 12344445555555555555555555543222121 223334444455555555555555555554
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.52 E-value=1.1e-06 Score=74.76 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA 842 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 842 (918)
+......|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|+..+++..+.. +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3444444555555555555555544431 1134444445555555555555555555544321 1133344444445555
Q ss_pred cCChhhHHHHHHHHHhCCCCCCcccHHHHH
Q 043758 843 NCLSIPAFNMFKEMIVHDHVPCLSNCNWLL 872 (918)
Q Consensus 843 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 872 (918)
.|++++|...+++.++.. |.+..++..|.
T Consensus 94 ~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 555555555555554443 44444443333
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.48 E-value=9.9e-07 Score=75.12 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=57.2
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+.+.|++++|+..|+++++.++. ++.+|..+..+|.+.|++++|+..|+++++.+ +.+...|..+..++...|++
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCH
Confidence 34445666666666666666665543 55566666666666667777766666666654 44555666666666666666
Q ss_pred hHHHHHHHHHHh
Q 043758 149 DEVLEVVNIMRK 160 (918)
Q Consensus 149 ~~A~~~~~~~~~ 160 (918)
++|++.|+...+
T Consensus 98 ~~A~~~~~~al~ 109 (126)
T 4gco_A 98 SKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.47 E-value=7.9e-07 Score=78.13 Aligned_cols=90 Identities=16% Similarity=0.029 Sum_probs=61.2
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+.+.|++++|...|+++++.+|. ++.+|..+..+|...|++++|+..|+++.... |.+...|..+..+|...|++
T Consensus 43 g~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 43 AYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 34446666777777777777766644 56667777777777777777777777776665 44566677777777777777
Q ss_pred hHHHHHHHHHHh
Q 043758 149 DEVLEVVNIMRK 160 (918)
Q Consensus 149 ~~A~~~~~~~~~ 160 (918)
++|++.|+...+
T Consensus 121 ~eA~~~~~~al~ 132 (151)
T 3gyz_A 121 LKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=1.2e-05 Score=80.72 Aligned_cols=168 Identities=8% Similarity=-0.019 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--H
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ-----VTFCILINGHIAAGEIDQAIGLFNQMNADG---CVPD--K 795 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~ 795 (918)
..+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|+..+++..+.. ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677888889999999999888774322111 123445556778889999999999887641 1122 4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHccCChhhHHHHHHHHHhCC----CCC-C
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKR-GFVPK-----KATYEHLLECFCANCLSIPAFNMFKEMIVHD----HVP-C 864 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~ 864 (918)
.+|+.+...|...|++++|...+++..+. ...|+ ..++..+..+|.+.|++++|...+++.+... .+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999999987621 01222 1477888889999999999999999886432 011 1
Q ss_pred cccHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 043758 865 LSNCNWLLNILCQEKHFHEA-QIVLDVMHK 893 (918)
Q Consensus 865 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 893 (918)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 776776543
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.44 E-value=4e-05 Score=76.58 Aligned_cols=191 Identities=11% Similarity=-0.044 Sum_probs=140.9
Q ss_pred hhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcC-ChHHHHHH
Q 043758 6 RGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALG-NIEDALRH 84 (918)
Q Consensus 6 ~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g-~~~~A~~~ 84 (918)
..++.+|...++.++.......+|+...+.+ +..+++.-.|...-+.++...| ++++++.+
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~------------------L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~ 111 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEII------------------VRMNPAHYTVWQYRFSLLTSLNKSLEDELRL 111 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------HHhCchhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3466777777777777766655666555444 3444444444444444555566 58999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhch-h-cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh--------HHHHH
Q 043758 85 FDRLISKNIVPIKLACVSILRGLFAE-E-KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD--------EVLEV 154 (918)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~ 154 (918)
++.++..+++ +..+|+....++... + ++++++.+++++.+.. +-|..+|+...-++.+.|.++ ++++.
T Consensus 112 ~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 112 MNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 9999998876 777999888777776 6 8899999999999887 567788887777776666666 89999
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhccCc-------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCh
Q 043758 155 VNIMRKKKGLVPALHPYKSLFYALCKNIR-------TVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNM 219 (918)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 219 (918)
++.+++. .+-|...|+....++.+.++ ++++...+++.....+. |...|+-+-..+.+.|..
T Consensus 190 ~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 190 CNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 9999872 34567778877777777765 68889999988887665 888898877777666653
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=3.5e-06 Score=76.27 Aligned_cols=129 Identities=10% Similarity=-0.048 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 841 (918)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 34455556666667777776666666542 124566666666677777777777777766653 1234556666666777
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHH--HHHHhcCCHHHHHHHHHHHHh
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLL--NILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 893 (918)
+.|++++|...++++.... |.+...+..+. ..+.+.|++++|...++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7777777777777777654 55555553333 336777888888887776543
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.43 E-value=8.4e-06 Score=77.45 Aligned_cols=123 Identities=11% Similarity=0.018 Sum_probs=57.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC
Q 043758 208 SLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREG 287 (918)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 287 (918)
.+...+...|++++|+..|++.. .|+...+..+..++...|++++|...+++..+.. +.+...+..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 33344444444444444444432 2334444444444444455555554444444432 223444444444455555
Q ss_pred CHHHHHHHHHHHhhCCCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 288 EVDAALMLLNSKVSSNLAPSV----------------HCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 288 ~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
++++|...|+...+.. +.+. ..+..+..++...|++++|...|++..+
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555554444432 1111 3445555555555555555555555544
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.42 E-value=1.5e-06 Score=83.71 Aligned_cols=131 Identities=8% Similarity=-0.102 Sum_probs=103.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHHHHH
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIMISN 282 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 282 (918)
.+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3455677888999999999999988765 3544455666668889999999999999776542 221 3467778899
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 283 YCREGEVDAALMLLNSKVSSNLAPS--VHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
+...|++++|+..|++.......|. ...+.....++.+.|+.++|..+|+++....
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999985432243 3466778889999999999999999999854
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=1.9e-06 Score=79.07 Aligned_cols=85 Identities=5% Similarity=-0.019 Sum_probs=42.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-hhchhcH--HHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 74 ALGNIEDALRHFDRLISKNIVPIKLACVSILRG-LFAEEKF--LEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
..|++++|...|+++.+.++. ++..+..+..+ +...|++ ++|+..|+++.... +.+...+..+...+...|++++
T Consensus 56 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 133 (177)
T 2e2e_A 56 WQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQ 133 (177)
T ss_dssp HTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHH
Confidence 334444444444444443322 34445555555 4455555 55555555555543 3334455555555555555555
Q ss_pred HHHHHHHHHh
Q 043758 151 VLEVVNIMRK 160 (918)
Q Consensus 151 A~~~~~~~~~ 160 (918)
|+..|+.+.+
T Consensus 134 A~~~~~~al~ 143 (177)
T 2e2e_A 134 AIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.40 E-value=1.4e-06 Score=86.87 Aligned_cols=94 Identities=12% Similarity=-0.115 Sum_probs=42.4
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYAL 178 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 178 (918)
.+..++..+...|++++|+..|+++.... +.+...|..+...+.+.|++++|++.++...+ . .+.+...+..+..++
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE-L-DGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-S-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHH
Confidence 44444444555555555555555544443 22344444444555555555555555555443 1 112233334444444
Q ss_pred hccCchHHHHHHHHHHH
Q 043758 179 CKNIRTVEAESFAREME 195 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~ 195 (918)
...|++++|...|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444433
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=4.9e-06 Score=70.79 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 841 (918)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..+++++.+. .+.+...+..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHH
Confidence 33344444444444444444444444421 113344444444455555555555555544432 1223334444444555
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ 877 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (918)
..|++++|...++++.... |.+...+..++.++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 5555555555555554443 4444444444444433
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.37 E-value=2.9e-05 Score=78.02 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=113.6
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCC-CCh----hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-CC----hhhHHHH
Q 043758 175 FYALCKNIRTVEAESFAREMESQGFY-VDK----LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE-PD----SYTCNTL 244 (918)
Q Consensus 175 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l 244 (918)
+..+...|++++|...+++..+.... |+. ..+..+...+...|++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45567778888888888887764322 121 12334666777788899999999888864222 22 1257888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC-----CCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CcchHHH
Q 043758 245 IHGFFKMGLFDKGWVLYSQMSDW-----GFQPN-MVTDLIMISNYCREGEVDAALMLLNSKVSS----NLAP-SVHCYTV 313 (918)
Q Consensus 245 l~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ 313 (918)
..++...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...++...+. +..+ -..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88888899999999988888741 11222 347778888899999999999998876642 1111 1457888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHh
Q 043758 314 LIDALYKHNR-LMEVDELYKKMLA 336 (918)
Q Consensus 314 ll~~~~~~g~-~~~a~~~~~~~~~ 336 (918)
+..++...|+ +++|.+.|++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999995 6999998888754
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.37 E-value=4.5e-06 Score=72.10 Aligned_cols=96 Identities=8% Similarity=-0.040 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKG 804 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 804 (918)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3444555555555555555555555554421 1123344444444445555555555555444421 1123444444444
Q ss_pred HHHcCChhHHHHHHHHHH
Q 043758 805 LCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~ 822 (918)
+...|++++|...+++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444443
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.36 E-value=4.8e-06 Score=71.59 Aligned_cols=115 Identities=7% Similarity=-0.020 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA 842 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 842 (918)
+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHHHHHH
Confidence 3334444444444444444444444421 113344444444445555555555555444432 11223344444445555
Q ss_pred cCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 843 NCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 843 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
.|++++|...+++..... |.+...+..++.++...|+
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 555555555555555443 4444455555555555444
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.36 E-value=1.1e-06 Score=77.36 Aligned_cols=95 Identities=12% Similarity=-0.028 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECF 840 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 840 (918)
.+..+...+...|++++|+..|++++... +.+...|..+..+|...|++++|+..+++..+. .| +...+..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHH
Confidence 33444445555555555555555554431 113444555555555555555555555555432 22 333444444455
Q ss_pred HccCChhhHHHHHHHHHhC
Q 043758 841 CANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 841 ~~~~~~~~A~~~~~~~~~~ 859 (918)
...|++++|...+++.++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 137
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.35 E-value=0.00015 Score=72.09 Aligned_cols=171 Identities=9% Similarity=-0.039 Sum_probs=120.0
Q ss_pred HhcCChH-HHHHHHHHHHhCCCCCChhhHHHHHHHhhchhc----------HHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 043758 73 VALGNIE-DALRHFDRLISKNIVPIKLACVSILRGLFAEEK----------FLEAFDYFIKICNAGVDLNCWSYNVLIDG 141 (918)
Q Consensus 73 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (918)
.+.|.++ +|+.+++.++..+|. +..+|+.--.++...++ +++++.+++.+.... +-+..+|+...-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445444 788889999988865 66678866666555444 688999999988876 5577888888878
Q ss_pred HHcCC--ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCc-hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC--
Q 043758 142 LCYKG--FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIR-TVEAESFAREMESQGFYVDKLMYTSLINGYCSN-- 216 (918)
Q Consensus 142 ~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 216 (918)
+...+ .+++++++++.+.+. .+-|...|+...-++...|. ++++...++.+.+..+. |...|+-....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhh
Confidence 87777 488999999999872 34556677766666777777 58888999998887665 777887766555443
Q ss_pred ------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 043758 217 ------------RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFF 249 (918)
Q Consensus 217 ------------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 249 (918)
+.++++++.+.+..... +-|...|+.+--.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34667777777777653 334455654433333
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=8.3e-06 Score=73.72 Aligned_cols=129 Identities=7% Similarity=0.033 Sum_probs=92.0
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNY 283 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (918)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777778888888888888877653 2345677777777788888888888888877764 44566777788888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCcchHHH--HHHHHHhcCChhHHHHHHHHHH
Q 043758 284 CREGEVDAALMLLNSKVSSNLAPSVHCYTV--LIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
...|++++|...|+...... +.+...+.. ++..+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888877654 234444433 3334667788888888877654
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=1.9e-06 Score=85.84 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=81.3
Q ss_pred HHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 043758 64 ALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC 143 (918)
Q Consensus 64 a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (918)
+....+..+.+.|++++|...|+.+++.++. +..+|..+..+|.+.|++++|+..++++.+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3334445557888899999999999887654 77899999999999999999999999999876 567788999999999
Q ss_pred cCCChhHHHHHHHHHHh
Q 043758 144 YKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~ 160 (918)
..|++++|+..|+...+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999876
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.34 E-value=4.8e-06 Score=85.35 Aligned_cols=150 Identities=9% Similarity=-0.081 Sum_probs=108.7
Q ss_pred CChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHH
Q 043758 739 GRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPD--------------KTVYNTLLK 803 (918)
Q Consensus 739 g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~ 803 (918)
+++++|+..|+...+. .| +...+..+...|.+.|++++|+..|++.++...... ...|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444455444433321 23 234566677777777888888888877776421111 478888888
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 043758 804 GLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHE 883 (918)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (918)
+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...+++++... |.+..++..++.++.+.|++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888642 3366678888888999999999999999988876 7788889999999999999988
Q ss_pred H-HHHHHHHH
Q 043758 884 A-QIVLDVMH 892 (918)
Q Consensus 884 A-~~~~~~~~ 892 (918)
| ..+++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8 44666654
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.31 E-value=3.7e-06 Score=74.03 Aligned_cols=90 Identities=13% Similarity=-0.077 Sum_probs=61.9
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+...|++++|...|+.++..++. ++.+|..+..+|...|++++|+..|+++.... +.+...+..+..++...|++
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 33446666667777777777666543 56677777777777777777777777777665 44566677777777777777
Q ss_pred hHHHHHHHHHHh
Q 043758 149 DEVLEVVNIMRK 160 (918)
Q Consensus 149 ~~A~~~~~~~~~ 160 (918)
++|++.|+...+
T Consensus 106 ~~A~~~~~~al~ 117 (148)
T 2vgx_A 106 AEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.30 E-value=1.3e-05 Score=68.09 Aligned_cols=99 Identities=15% Similarity=0.261 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (918)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455556666666666666666666665542 2234455555666666666666666666665543 3345555666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 043758 283 YCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~ 303 (918)
|...|++++|...|+.+.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 666666666666666665543
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.28 E-value=1e-05 Score=69.75 Aligned_cols=116 Identities=9% Similarity=0.010 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (918)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3445555556666666666666666655442 1234455555555556666666666666655543 3344555556666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhc
Q 043758 283 YCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKH 321 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 321 (918)
|...|++++|...|+...... +.+...+..+..++...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 666666666666666655443 22334444444444443
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.28 E-value=5.3e-06 Score=76.06 Aligned_cols=122 Identities=7% Similarity=0.050 Sum_probs=78.9
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--h
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHG-FFKMGLF--D 255 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~--~ 255 (918)
...|++++|...+++..+..+. +...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456677777777776665433 56677777777777777777777777776652 2244556666666 5567776 7
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
+|...++++.+.. +.+...+..+...|...|++++|...|+.+....
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777777654 3445666677777777777777777777777654
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=4.8e-06 Score=78.42 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=57.4
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHHhcCC
Q 043758 701 FSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE----GLRP-NQVTFCILINGHIAAGE 775 (918)
Q Consensus 701 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~ 775 (918)
...|++++|.+.++.+.. ........+..+...+...|++++|...+++.... +..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345666666664433321 11123455556666666666666666666655441 1111 12244445555556666
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043758 776 IDQAIGLFNQMNAD----GCVP--DKTVYNTLLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 776 ~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
+++|...+++..+. +..| ....+..+..++...|++++|...+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666655555442 1011 12334455555555555555555555544
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=0.0002 Score=71.27 Aligned_cols=182 Identities=7% Similarity=-0.047 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh--cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC-hhHHHHH
Q 043758 78 IEDALRHFDRLISKNIVPIKLACVSILRGLFAEE--KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF-LDEVLEV 154 (918)
Q Consensus 78 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 154 (918)
+++++.+++.++..++. +..+|+....++...+ .+++++.+++++.+.. +-|..+|+...-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 57899999999998876 7889998887777777 4899999999999987 6688888888888888888 5899999
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhcc--------------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----
Q 043758 155 VNIMRKKKGLVPALHPYKSLFYALCKN--------------IRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN---- 216 (918)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 216 (918)
++.+++. .+.|...|+....++... +.++++...+.......+. |...|+-+-..+.+.
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcc
Confidence 9999872 345566666665555443 4578899999998887665 888887665555554
Q ss_pred -------CChHHHHHHHHHHHhcCCCCChhhHHHHHHH-----HHhcCChhHHHHHHHHHHhC
Q 043758 217 -------RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHG-----FFKMGLFDKGWVLYSQMSDW 267 (918)
Q Consensus 217 -------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~ 267 (918)
+.++++++.++++.+. .||. .|+.+..+ .-..|..+++...+.++.+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3467778888887775 4554 33322111 11344555666666666654
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.27 E-value=3.2e-05 Score=77.71 Aligned_cols=131 Identities=5% Similarity=-0.123 Sum_probs=54.9
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcc-----hhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC----ccc
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKICNAGVDLNC-----WSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA----LHP 170 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 170 (918)
+...+..+...|++++|+..+++..+.....+. ..+..+...+...|++++|++.++...+......+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334445555556666666666555443211100 11223334444455555555555554431110011 123
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHh---CCCC-C--ChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 043758 171 YKSLFYALCKNIRTVEAESFAREMES---QGFY-V--DKLMYTSLINGYCSNRNMKMAMRLFFRML 230 (918)
Q Consensus 171 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 230 (918)
++.+...|...|++++|...|++..+ .... + ...+|+.+...|...|++++|+..+++..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444444555555554444431 1000 0 01244444444444555555555444443
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=1.2e-05 Score=68.91 Aligned_cols=119 Identities=8% Similarity=-0.055 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (918)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 4456666667777777777777777766542 2345566666667777777777777777776653 3445666677777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCh
Q 043758 283 YCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRL 324 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 324 (918)
|...|++++|...|+...... +.+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777777777777777766654 33455666666666665553
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=8.6e-06 Score=71.24 Aligned_cols=97 Identities=14% Similarity=-0.004 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 841 (918)
.+..+...+...|++++|+..|+++.... +.+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444555566666666666666665532 1244555566666666666666666666665421 223344555555666
Q ss_pred ccCChhhHHHHHHHHHhCC
Q 043758 842 ANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~ 860 (918)
..|++++|...+++.+...
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 6666666666666665543
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.21 E-value=9.8e-06 Score=69.14 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
.|..+...+...|++++|+..+++..+. .+.+...|..+..++.+.|++++|+..+++.+... |.++..+..++.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3344444444555555555555544432 11233444444445555555555555555555443 444555555555555
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 043758 877 QEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 877 ~~g~~~~A~~~~~~~~~~ 894 (918)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.20 E-value=1.3e-06 Score=81.89 Aligned_cols=157 Identities=10% Similarity=-0.077 Sum_probs=99.5
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--------------HHHHHHH
Q 043758 737 GVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADG-CVPD--------------KTVYNTL 801 (918)
Q Consensus 737 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~--------------~~~~~~l 801 (918)
..|+++++.+.|+.-... .......+..+...+...|++++|+..|++.++.. -.|+ ...|..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 345555555554422211 01122355666777778888888888888887741 1110 2677888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHF 881 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 881 (918)
..+|...|++++|+..+++..+. -+.+...+..+..++...|++++|...+++.+... |.+..++..++.++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHH
Confidence 88888999999999999888864 23356678888888899999999999999988776 77788888899888888888
Q ss_pred HHHH-HHHHHHHhCCC
Q 043758 882 HEAQ-IVLDVMHKRGR 896 (918)
Q Consensus 882 ~~A~-~~~~~~~~~~~ 896 (918)
+++. ..+..|...+.
T Consensus 173 ~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 173 RKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HC--------------
T ss_pred HHHHHHHHHHHhcccc
Confidence 8777 55666655543
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.18 E-value=9e-06 Score=71.10 Aligned_cols=90 Identities=11% Similarity=-0.117 Sum_probs=69.4
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+.+.|++++|...|+.++..++. ++..|..+..+|...|++++|+..|+++.... +.+...+..+..++...|++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 33446777788888888888776654 66677888888888888888888888888775 55667777888888888888
Q ss_pred hHHHHHHHHHHh
Q 043758 149 DEVLEVVNIMRK 160 (918)
Q Consensus 149 ~~A~~~~~~~~~ 160 (918)
++|++.|+...+
T Consensus 103 ~~A~~~~~~al~ 114 (142)
T 2xcb_A 103 DGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888776
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=9.5e-06 Score=67.33 Aligned_cols=96 Identities=10% Similarity=-0.121 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCC--CcccHHHHHHHH
Q 043758 798 YNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVP--CLSNCNWLLNIL 875 (918)
Q Consensus 798 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 875 (918)
+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++..... |. +...+..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 334444444444444444444444432 11233344444444455555555555555554443 33 444555555555
Q ss_pred Hhc-CCHHHHHHHHHHHHhCC
Q 043758 876 CQE-KHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 876 ~~~-g~~~~A~~~~~~~~~~~ 895 (918)
... |++++|.+.+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 555 55555555555554444
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.18 E-value=3.8e-05 Score=64.29 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 043758 764 CILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN 843 (918)
Q Consensus 764 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 843 (918)
..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 334444444444444444444444421 1133444444444444444444444444444321 11233444444444444
Q ss_pred CChhhHHHHHHHHHhC
Q 043758 844 CLSIPAFNMFKEMIVH 859 (918)
Q Consensus 844 ~~~~~A~~~~~~~~~~ 859 (918)
|++++|...+++....
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 4444444444444443
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.17 E-value=1.5e-05 Score=75.01 Aligned_cols=156 Identities=10% Similarity=-0.078 Sum_probs=115.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CcHHHHHHHHHHHHcCCCh
Q 043758 482 KWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKA----GID-PDEVFFTTMINGYLQNRKP 556 (918)
Q Consensus 482 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 556 (918)
..|++++|..+++.+.. .+.....++..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888885554443 23346778899999999999999999999998762 212 2345678888899999999
Q ss_pred HHHHHHHHHHHhC----CCCC--CchhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCC
Q 043758 557 IEACQLFEKMKEN----SVQP--GSYPYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYTALINHFLRAGE 625 (918)
Q Consensus 557 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 625 (918)
++|...+++..+. +-.| ....+..+...+...|++++|...+++..+. +.. .-..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999987653 2111 1345677888899999999999999987753 211 113346788889999999
Q ss_pred HHHHHHHHHHHHH
Q 043758 626 FEFASRLENLMVT 638 (918)
Q Consensus 626 ~~~a~~~~~~~~~ 638 (918)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988864
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.14 E-value=2.1e-05 Score=80.53 Aligned_cols=131 Identities=11% Similarity=0.001 Sum_probs=99.7
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC----------------hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD----------------SYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
+...|..+...|...|++++|+..|++..+.. |+ ...|..+..++.+.|++++|...+++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567777777777888888888887777653 33 3677788888888888888888888888
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEV-DELYKKMLA 336 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 336 (918)
+.. +.+...+..+..+|...|++++|...|+...+.. +.+..++..+..++...|++++| ...|+.|..
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 5567788888888888889999988888888765 44567788888888888888877 446666643
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.13 E-value=1.9e-05 Score=71.12 Aligned_cols=91 Identities=9% Similarity=-0.130 Sum_probs=76.8
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF 147 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 147 (918)
.+..+.+.|++++|+..|+++++.++. +..+|..+..+|...|++++|+..|+++++.. +.+...|..+..++...|+
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccC
Confidence 344557888888888888888887754 67788899999999999999999999998876 5567888899999999999
Q ss_pred hhHHHHHHHHHHh
Q 043758 148 LDEVLEVVNIMRK 160 (918)
Q Consensus 148 ~~~A~~~~~~~~~ 160 (918)
+++|++.|++..+
T Consensus 95 ~~~A~~~~~~al~ 107 (164)
T 3sz7_A 95 YKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999887
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.13 E-value=2.3e-06 Score=80.21 Aligned_cols=132 Identities=12% Similarity=-0.016 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-CC--------------hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE-PD--------------SYTCNTLIHGFFKMGLFDKGWVLYSQMSDW 267 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 267 (918)
...+..+...+...|++++|+..|++..+.... |+ ...|..+..++...|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666677777778888888888777764211 10 156667777778888888888888888776
Q ss_pred CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHH-HHHHHHHh
Q 043758 268 GFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVD-ELYKKMLA 336 (918)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~ 336 (918)
. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+..++...++..++. ..|..|..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 4566777778888888888888888888877654 345566677777777666666665 44555443
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.12 E-value=7.5e-05 Score=67.13 Aligned_cols=104 Identities=13% Similarity=-0.025 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECF 840 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 840 (918)
.+..+...+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..+++..+. .| +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 44444555555555555555555555531 113455555555555555555555555555542 23 344555555555
Q ss_pred HccCChhhHHHHHHHHHhCCCCCCcccHH
Q 043758 841 CANCLSIPAFNMFKEMIVHDHVPCLSNCN 869 (918)
Q Consensus 841 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 869 (918)
.+.|++++|...+++.+... |.+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 117 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE-GNGGSDAM 117 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-SSSCCHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 66666666666666655544 44444333
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.12 E-value=2.5e-05 Score=67.79 Aligned_cols=99 Identities=6% Similarity=-0.106 Sum_probs=56.6
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 759 NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLE 838 (918)
Q Consensus 759 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (918)
+...+..+...+...|++++|+..|++.+... +.+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455556666666666666666666665542 1234556666666666666666666666665421 223445555555
Q ss_pred HHHccCChhhHHHHHHHHHhC
Q 043758 839 CFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 839 ~~~~~~~~~~A~~~~~~~~~~ 859 (918)
++...|++++|...+++++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 666666666666666665543
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.10 E-value=1.6e-05 Score=67.66 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=56.5
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCC--Cc----chhHHHHHHH
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVD--LN----CWSYNVLIDG 141 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~l~~~ 141 (918)
++..+.+.|++++|+..|+++++.+|. +..+|..+..+|...|++++|+..|++.++.... ++ ..+|..+..+
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~ 92 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA 92 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 344446666666666667776666543 5666777777777777777777777776654211 11 1245555566
Q ss_pred HHcCCChhHHHHHHHHHHh
Q 043758 142 LCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 142 ~~~~g~~~~A~~~~~~~~~ 160 (918)
+...|++++|++.|++..+
T Consensus 93 ~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 93 FQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 6666666666666666654
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=1.3e-05 Score=67.54 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 798 YNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 798 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
+..+...+.+.|++++|+..+++..+. .| +...|..+..++...|++++|+..++++++.. |.+..++..++.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 444556666777777777777776652 33 45566666667777777777777777777665 666777777777777
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 043758 877 QEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 877 ~~g~~~~A~~~~~~~~~~~ 895 (918)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 7777777777777776654
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.07 E-value=2.2e-05 Score=66.86 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=49.7
Q ss_pred hhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 98 LACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
.++..++..+.+.|++++|+..|+++++.. |.+..+|+.+..+|...|++++|++.++..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 366678888888888888888888888775 55667788888888888888888888888765
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.6e-05 Score=66.43 Aligned_cols=89 Identities=12% Similarity=0.062 Sum_probs=59.0
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 149 (918)
..+.+.|++++|...|+.+++.++. +..+|..+..++...|++++|+..|+++.+.. +.+...|..+..++...|+++
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 89 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA 89 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHH
Confidence 3346666666666667766665543 55666777777777777777777777776664 445566666777777777777
Q ss_pred HHHHHHHHHHh
Q 043758 150 EVLEVVNIMRK 160 (918)
Q Consensus 150 ~A~~~~~~~~~ 160 (918)
+|++.|+...+
T Consensus 90 ~A~~~~~~al~ 100 (126)
T 3upv_A 90 SALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776655
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=6.3e-05 Score=66.16 Aligned_cols=97 Identities=12% Similarity=-0.006 Sum_probs=66.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN----QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYN 799 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 799 (918)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..+|...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4566777777777777777777777777763 454 3456666667777777777777777776642 12456666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.+..+|...|++++|...+++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677777777777777777777664
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.04 E-value=5.7e-05 Score=62.47 Aligned_cols=88 Identities=18% Similarity=0.115 Sum_probs=48.2
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCC--cchhHHHHHHHHHcC-CC
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDL--NCWSYNVLIDGLCYK-GF 147 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g~ 147 (918)
++...|++++|...|+++.+..+. +..++..+..++...|++++|+..|+++.+.. +. +...+..+...+... |+
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSC
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCC
Confidence 334555555555555555554432 34455555555666666666666666655543 22 344555555555566 66
Q ss_pred hhHHHHHHHHHHh
Q 043758 148 LDEVLEVVNIMRK 160 (918)
Q Consensus 148 ~~~A~~~~~~~~~ 160 (918)
+++|++.++...+
T Consensus 93 ~~~A~~~~~~~~~ 105 (112)
T 2kck_A 93 EVEAEIAEARAKL 105 (112)
T ss_dssp SHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhh
Confidence 6666666665554
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=8.7e-05 Score=62.02 Aligned_cols=99 Identities=10% Similarity=-0.050 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (918)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666666666666666666665542 2244455555666666666666666666665543 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 043758 283 YCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~ 303 (918)
+...|++++|...|+...+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 666666666666666665543
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.03 E-value=1.6e-05 Score=66.94 Aligned_cols=86 Identities=14% Similarity=-0.060 Sum_probs=55.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|++++|...|+++++.++. +..+|..+..++...|++++|+..|+++++.. +.+...+..+..++...|++++|+
T Consensus 28 ~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~ 105 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAAL 105 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5566666666666666665543 55566666666677777777777777666654 345556666666666667777777
Q ss_pred HHHHHHHh
Q 043758 153 EVVNIMRK 160 (918)
Q Consensus 153 ~~~~~~~~ 160 (918)
..|+...+
T Consensus 106 ~~~~~al~ 113 (121)
T 1hxi_A 106 ASLRAWLL 113 (121)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 77666654
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=4.3e-05 Score=66.02 Aligned_cols=62 Identities=10% Similarity=-0.209 Sum_probs=33.8
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHhC-------CCCCCcccH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 832 TYEHLLECFCANCLSIPAFNMFKEMIVH-------DHVPCLSNC----NWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 832 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
.|..+..++.+.|++++|+..+++.++. + |.+...| +.++.+|...|++++|...|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444444444445555544444444443 4 4445556 66666666666666666666666543
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.95 E-value=7e-05 Score=64.84 Aligned_cols=100 Identities=7% Similarity=-0.125 Sum_probs=74.6
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 722 MPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTL 801 (918)
Q Consensus 722 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 801 (918)
+.+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|+..+++..+.. +.+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3456777888888888888888888888877753 2245567777778888888888888888887752 2256777788
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
..+|...|++++|...+++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888887764
No 171
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.95 E-value=5.8e-05 Score=65.02 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=87.3
Q ss_pred hhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHH
Q 043758 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDA 81 (918)
Q Consensus 2 ~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A 81 (918)
++-|-+++++|.+.+++++...|. ++.+|..+..++...++++.+..... .+++|
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~------------------~aea~~n~G~~l~~l~~~~~g~~al~-------~~~eA 65 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPL------------------DADNLTRWGGVLLELSQFHSISDAKQ-------MIQEA 65 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTT------------------CHHHHHHHHHHHHHHHHHSCHHHHHH-------HHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCC------------------CHHHHHHHHHHHHHhcccchhhhhHh-------HHHHH
Confidence 456778999999999999999998 66667777777777776654444322 26899
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhhchh-----------cHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 043758 82 LRHFDRLISKNIVPIKLACVSILRGLFAEE-----------KFLEAFDYFIKICNAGVDLNCWSYNVLIDG 141 (918)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (918)
+..|+++++.++. +..+|+.+..+|...| ++++|+..|+++++.. |+...|...+..
T Consensus 66 i~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~ 133 (158)
T 1zu2_A 66 ITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 9999999998866 6779999999998875 8999999999999874 565555544443
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.93 E-value=0.00012 Score=62.64 Aligned_cols=109 Identities=9% Similarity=0.037 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADG--CVPD----KTVYN 799 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~ 799 (918)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. ..++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455566667777777777777777776642 2344556666666777777777777777766541 1112 55666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLL 837 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 837 (918)
.+..++...|++++|...+++..+ ..|+...+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 666667777777777777776665 234544444433
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00033 Score=75.04 Aligned_cols=165 Identities=9% Similarity=-0.060 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcc----cHHHHHHHHhccCchHHHHHHHHHHHh----CCCCC-Chhh
Q 043758 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALH----PYKSLFYALCKNIRTVEAESFAREMES----QGFYV-DKLM 205 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~ 205 (918)
+..++..|...|++++|.+.+..+.+..+..++.. +.+.+...+...|+++.|..+++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 44556666666666666666666544111111111 112222233344556666655555432 11111 1234
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhc--CC--CCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCcc--Hh
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKT--GC--EPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDW----GFQPN--MV 274 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~ 274 (918)
+..+...|...|++++|..++++.... +. .+. ...+..++..|...|++++|..++++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666666667777776666665432 10 111 224555566666666666666666655432 11111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 275 TDLIMISNYCREGEVDAALMLLNSK 299 (918)
Q Consensus 275 ~~~~l~~~~~~~g~~~~A~~~~~~~ 299 (918)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444555556666665555444
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=0.00017 Score=63.30 Aligned_cols=98 Identities=13% Similarity=0.019 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD----SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDL 277 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (918)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++...+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555666666666666666666666654 344 3455555555666666666666666665543 33455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 278 IMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 278 ~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
.+..+|...|++++|...|+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5666666666666666666665554
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.91 E-value=3.4e-05 Score=66.09 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=54.9
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC--CCc----chhHHHHHHHHH
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGV--DLN----CWSYNVLIDGLC 143 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l~~~~~ 143 (918)
..+...|+++.|...|+.+....+. +..++..+...+...|++++|+..++++..... +++ ..++..+...+.
T Consensus 12 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 3345566666666666666655432 455666667777777777777777776665431 111 445666666666
Q ss_pred cCCChhHHHHHHHHHHh
Q 043758 144 YKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~ 160 (918)
..|++++|.+.|+.+.+
T Consensus 91 ~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 91 KEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 66777777766666665
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=1.1e-05 Score=67.70 Aligned_cols=86 Identities=9% Similarity=-0.002 Sum_probs=67.0
Q ss_pred hcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHH
Q 043758 74 ALGNIEDALRHFDRLISKNI--VPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEV 151 (918)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (918)
..|++++|+..|+++++.++ +.+..++..+..+|...|++++|+..|+++.+.. +.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35778888888888888641 1245688888899999999999999999988876 55677888888999999999999
Q ss_pred HHHHHHHHh
Q 043758 152 LEVVNIMRK 160 (918)
Q Consensus 152 ~~~~~~~~~ 160 (918)
++.|+...+
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=5.9e-05 Score=81.00 Aligned_cols=211 Identities=12% Similarity=0.043 Sum_probs=103.9
Q ss_pred hhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHH
Q 043758 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDA 81 (918)
Q Consensus 2 ~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A 81 (918)
.+..+|++.+|.+.+..+++..|...++... ... .....+..+.|+.-++.++...|++++|
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~------------~~~------~~~~~~~~~~al~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG------------ASV------DDKRRNEQETSILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS------------SSB------CSHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHH------------HHH------HHHHhhhHHHHHHHHHHHHHHCCCHHHH
Confidence 3566778888888888877776653322100 000 0000011122333334444455555555
Q ss_pred HHHHHHHHhCCCC-CC----hhhHHHHHHHhhchhcHHHHHHHHHHHhhc----CCCC-cchhHHHHHHHHHcCCChhHH
Q 043758 82 LRHFDRLISKNIV-PI----KLACVSILRGLFAEEKFLEAFDYFIKICNA----GVDL-NCWSYNVLIDGLCYKGFLDEV 151 (918)
Q Consensus 82 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 151 (918)
.+.+..+...... ++ ....+.+...+...|++++|+.+++..... +..+ -..++..+...+...|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 5555444332100 01 112333444455567777777777665431 1111 123556667777777777777
Q ss_pred HHHHHHHHhcCCCCCC----cccHHHHHHHHhccCchHHHHHHHHHHHhC--CCC-C-C--hhhHHHHHHHHhcCCChHH
Q 043758 152 LEVVNIMRKKKGLVPA----LHPYKSLFYALCKNIRTVEAESFAREMESQ--GFY-V-D--KLMYTSLINGYCSNRNMKM 221 (918)
Q Consensus 152 ~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~li~~~~~~g~~~~ 221 (918)
..+++.+........+ ...+..++..|...|++++|...++..... ... | . ...+..+...+...|++++
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 7777766542111111 234555566666666666666666654432 111 1 1 1234445555556666666
Q ss_pred HHHHHHHHH
Q 043758 222 AMRLFFRML 230 (918)
Q Consensus 222 A~~~~~~m~ 230 (918)
|...|.+..
T Consensus 235 A~~~~~~a~ 243 (434)
T 4b4t_Q 235 AFSYFFESF 243 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.89 E-value=0.00011 Score=78.84 Aligned_cols=128 Identities=8% Similarity=-0.124 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCV-P-------------DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFV 827 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 827 (918)
.+..+...+.+.|++++|+..|+++++.... + ....|..+..+|.+.|++++|+..+++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 4455555566666666666666666553111 0 04677777778888888888888888877631 2
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH-HHHHH
Q 043758 828 PKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQI-VLDVM 891 (918)
Q Consensus 828 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 891 (918)
.+...|..+..+|...|++++|...++++++.. |.+..++..++.++.+.|++++|.+ .+..|
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777778888888888888888888776 6777788888888888888877653 34444
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.88 E-value=5e-05 Score=64.92 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 043758 765 ILINGHIAAGEIDQAIGLFNQMNADGCVPDK---TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK----KATYEHLL 837 (918)
Q Consensus 765 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~ 837 (918)
.+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...+++..+. .|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 3455566677777777777776664211 12 35556666667777777777777666642 232 34455555
Q ss_pred HHHHccCChhhHHHHHHHHHhC
Q 043758 838 ECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 838 ~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
.++.+.|++++|...+++++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.85 E-value=5.2e-05 Score=67.99 Aligned_cols=98 Identities=9% Similarity=-0.063 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhC----CCC-CCcc
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKR----GFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVH----DHV-PCLS 866 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~ 866 (918)
++..+...+...|++++|...+++..+. +..+ ....+..+..++...|++++|...+++.+.. +.+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555555544321 0000 0123444445555666666666655555422 111 1144
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 867 NCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 867 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
.+..++.+|...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5777888888888888888888877653
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.00028 Score=77.38 Aligned_cols=135 Identities=9% Similarity=-0.039 Sum_probs=100.3
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhc----------HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcC
Q 043758 76 GNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEK----------FLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYK 145 (918)
Q Consensus 76 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 145 (918)
...++|++.++.+++.++. +..+|+....++...|+ +++++..++.+.+.. +-+..+|+...-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456778889999888865 66688877777777777 888999999988876 55777888888888888
Q ss_pred C--ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC-chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 043758 146 G--FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNI-RTVEAESFAREMESQGFYVDKLMYTSLINGYCS 215 (918)
Q Consensus 146 g--~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 215 (918)
+ +++++++.++++.+. .+-+...|+....++.+.| .++++.+.++++.+..+. +..+|+-...++..
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHh
Confidence 8 668888888888872 2345666766666666777 777888888887777655 67777766655544
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.81 E-value=2.7e-05 Score=83.95 Aligned_cols=118 Identities=12% Similarity=-0.004 Sum_probs=66.4
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
.+.+.|++++|...|+++++.++. +..+|..+..+|.+.|++++|+..++++.+.. +.+..++..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 335666777777777766665533 45566666667777777777777777766654 3455566666666666666666
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHH--HhccCchHHHHHHHH
Q 043758 151 VLEVVNIMRKKKGLVPALHPYKSLFYA--LCKNIRTVEAESFAR 192 (918)
Q Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 192 (918)
|++.|++..+.. +.+...+..+..+ +.+.|++++|...++
T Consensus 93 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666521 1122233333333 444555555555554
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.80 E-value=2e-05 Score=66.06 Aligned_cols=86 Identities=14% Similarity=0.036 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHH
Q 043758 773 AGEIDQAIGLFNQMNADGC-VP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAF 850 (918)
Q Consensus 773 ~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 850 (918)
.|++++|+..|+++++.+. .| +...+..+..+|...|++++|+..+++..+.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4556666666666655321 12 23455555566666666666666666655421 223445555555566666666666
Q ss_pred HHHHHHHhC
Q 043758 851 NMFKEMIVH 859 (918)
Q Consensus 851 ~~~~~~~~~ 859 (918)
..+++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665544
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.80 E-value=4.7e-05 Score=77.94 Aligned_cols=150 Identities=7% Similarity=-0.084 Sum_probs=81.3
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKG 804 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 804 (918)
...+..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 456677777777888888888888887763 454431 222333333332221 1367788888
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCCHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNI-LCQEKHFH 882 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~ 882 (918)
|.+.|++++|+..+++..+. .| +...|..+..+|...|++++|...+++++... |.+..++..+..+ ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988863 44 66788888889999999999999999988776 6778888888877 44556788
Q ss_pred HHHHHHHHHHhCCC
Q 043758 883 EAQIVLDVMHKRGR 896 (918)
Q Consensus 883 ~A~~~~~~~~~~~~ 896 (918)
.+..++.+|.+...
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 88888888876653
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.79 E-value=5.2e-05 Score=81.66 Aligned_cols=115 Identities=10% Similarity=-0.023 Sum_probs=53.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChh
Q 043758 770 HIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSI 847 (918)
Q Consensus 770 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 847 (918)
+.+.|++++|++.|+++++. .| +...|..+..+|.+.|++++|+..+++..+. .| +...+..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 33444555555555554442 12 2344445555555555555555555555442 22 3334444445555555555
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHH--HHhcCCHHHHHHHHH
Q 043758 848 PAFNMFKEMIVHDHVPCLSNCNWLLNI--LCQEKHFHEAQIVLD 889 (918)
Q Consensus 848 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 889 (918)
+|.+.++++++.. |.+...+..++.+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555555443 4444455555544 555555555555554
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.79 E-value=0.00014 Score=62.84 Aligned_cols=89 Identities=12% Similarity=-0.008 Sum_probs=67.3
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCC------C-----hhhHHHHHHHhhchhcHHHHHHHHHHHhhc-------CCCCcc
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVP------I-----KLACVSILRGLFAEEKFLEAFDYFIKICNA-------GVDLNC 132 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~ 132 (918)
.+.+.|++++|+..|+++++.++.. + ..+|..+..++.+.|++++|+..+++.++. . +.+.
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~ 98 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEG 98 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchH
Confidence 3467777888888888877765331 1 227888888888889999998888888876 5 4455
Q ss_pred hhH----HHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 133 WSY----NVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 133 ~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..| +....++...|++++|+..|++..+
T Consensus 99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 99 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 677 7888888888888888888888766
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.79 E-value=0.00036 Score=59.41 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=40.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc---HhhHHHHHH
Q 043758 209 LINGYCSNRNMKMAMRLFFRMLKTGCEPDS----YTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN---MVTDLIMIS 281 (918)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 281 (918)
+...+...|++++|...|++..+.. |+. ..+..+..++...|++++|...++.+.+.. +.+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3334444555555555555444431 211 233444444445555555555555544432 111 333444444
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 043758 282 NYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 282 ~~~~~g~~~~A~~~~~~~~~ 301 (918)
+|...|++++|...|+.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555444
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.74 E-value=0.00015 Score=74.92 Aligned_cols=91 Identities=7% Similarity=-0.123 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHH
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLL 872 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 872 (918)
+...|..+..+|.+.|++++|+..+++..+ +.| +...+..+..+|.+.|++++|...++++++.. |.+..++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 346777888888888888888888888886 344 55677778888888888888888888888776 66778888888
Q ss_pred HHHHhcCCHHHHHHH
Q 043758 873 NILCQEKHFHEAQIV 887 (918)
Q Consensus 873 ~~~~~~g~~~~A~~~ 887 (918)
.++...++.+++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887776543
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.74 E-value=9.6e-05 Score=66.27 Aligned_cols=103 Identities=11% Similarity=-0.000 Sum_probs=65.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CC---------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 761 VTFCILINGHIAAGEIDQAIGLFNQMNAD-------GC---------VP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 761 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
..+......+.+.|++++|+..|.+.+.. .- .| +...|..+..+|...|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35666777788888888888888887763 00 11 224566666666677777777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCc
Q 043758 824 RGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCL 865 (918)
Q Consensus 824 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 865 (918)
.. +.+...|..+..++...|++++|...+++.+... |.+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p~~~ 131 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH-PAAA 131 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CCCH
Confidence 31 2244566666666677777777777777666654 4443
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=0.00093 Score=73.24 Aligned_cols=161 Identities=7% Similarity=-0.105 Sum_probs=110.5
Q ss_pred HHHHHHcCCchhHHhhhhhhhHhcCC----------hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh--cHHHHHHH
Q 043758 52 MKKLIKFGQSQSALLLYQNDFVALGN----------IEDALRHFDRLISKNIVPIKLACVSILRGLFAEE--KFLEAFDY 119 (918)
Q Consensus 52 ~~~l~~~~~~~~a~~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~ 119 (918)
-.++...+++-.|+..-+.++...|+ +++++..++.+++.+++ +..+|+....++.+.+ ++++++..
T Consensus 53 ~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~ 131 (567)
T 1dce_A 53 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELEL 131 (567)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHH
Confidence 33444445554554444444444455 79999999999998877 7789998888888888 77999999
Q ss_pred HHHHhhcCCCCcchhHHHHHHHHHcCC-ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc--------------Cch
Q 043758 120 FIKICNAGVDLNCWSYNVLIDGLCYKG-FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKN--------------IRT 184 (918)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------g~~ 184 (918)
++++.+.+ +-|..+|+...-++.+.| .++++++.++.+++ ..+.+...|+....++.+. +.+
T Consensus 132 ~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~ 208 (567)
T 1dce_A 132 CARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL 208 (567)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH
T ss_pred HHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhcccccccccccccHHHH
Confidence 99999987 668889999888888889 89999999999986 2344566777666655442 334
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 043758 185 VEAESFAREMESQGFYVDKLMYTSLINGYCSNR 217 (918)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 217 (918)
+++.+.++......+. |...|+-+-..+.+.+
T Consensus 209 ~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 209 LKELELVQNAFFTDPN-DQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCC
Confidence 4444444444443332 4444444444444333
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.65 E-value=0.00019 Score=64.23 Aligned_cols=63 Identities=11% Similarity=-0.036 Sum_probs=54.0
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..++...|++++|+..|+...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3578888888999999999999999988876 56777888889999999999999999998887
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.65 E-value=0.0002 Score=76.35 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 865 LSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 865 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
......+..++...|++++|..++.++++
T Consensus 435 ~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 435 KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777788888888888888776
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.65 E-value=0.00029 Score=62.98 Aligned_cols=134 Identities=11% Similarity=-0.024 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCc----HHHHHHHHHHHHcCCChHHHHHHHHHHHhCC----CCC-C
Q 043758 505 VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGI-DPD----EVFFTTMINGYLQNRKPIEACQLFEKMKENS----VQP-G 574 (918)
Q Consensus 505 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~ 574 (918)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.. ..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 44677888889999999999999998876310 011 2467788889999999999999999876531 111 1
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 575 SYPYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYTALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
...+..+...+...|++++|...+++..+. +.. ....++..+..++...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345677788889999999999999987754 211 1245677888999999999999999998764
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.64 E-value=8.8e-05 Score=63.88 Aligned_cols=99 Identities=10% Similarity=-0.083 Sum_probs=78.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcH----------HHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKF----------LEAFDYFIKICNAGVDLNCWSYNVLIDGL 142 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (918)
.+.+.+++|...++.+.+.++. +..+|+.+..++...+++ ++|+..|++.++.. +.+..+|+.+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4556678999999999998866 788999999999888775 59999999999886 55777899999999
Q ss_pred HcCC-----------ChhHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 043758 143 CYKG-----------FLDEVLEVVNIMRKKKGLVPALHPYKSLFY 176 (918)
Q Consensus 143 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 176 (918)
...| ++++|++.|++..+ +.|+...|..-+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 8764 78888888888887 5666655544443
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.63 E-value=0.00045 Score=74.02 Aligned_cols=130 Identities=11% Similarity=-0.013 Sum_probs=101.9
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC----------------hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD----------------SYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
....|..+...|.+.|++++|+..|++..+.. |+ ...|..+..++.+.|++++|...+++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34567788888889999999999999888752 33 4678888888999999999999999998
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHH-HHHHHH
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDE-LYKKML 335 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~ 335 (918)
+.. +.+...+..+..+|...|++++|...|+...+.. +.+..++..+..++...++.+++.. .++.|.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 5567888889999999999999999999988875 4567788888888888888877664 455554
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=6.9e-05 Score=79.87 Aligned_cols=137 Identities=8% Similarity=-0.044 Sum_probs=87.4
Q ss_pred hhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHH
Q 043758 4 INRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALR 83 (918)
Q Consensus 4 ~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~ 83 (918)
..+|++++|..++.+++..... ......+....+++.|..++...|++++|..++ +.|+.
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~----------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~----------~~aL~ 379 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEP----------VFADTNLYVLRLLSIASEVLSYLQAYEEASHYA----------RRMVD 379 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTT----------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH----------HHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH----------HHHHH
Confidence 3456666666666665443211 011111222357888889998899999998886 56677
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC---CCCc----chhHHHHHHHHHcCCChhHHHHHHH
Q 043758 84 HFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG---VDLN----CWSYNVLIDGLCYKGFLDEVLEVVN 156 (918)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (918)
++....-.+.+-...+++.+...|..+|++++|+.+|+++.+.. ..|+ ..+.+.+..++...+.+++|..+|.
T Consensus 380 i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766544432235588899999999999999999998876421 1122 2234455556666677777777777
Q ss_pred HHHh
Q 043758 157 IMRK 160 (918)
Q Consensus 157 ~~~~ 160 (918)
.+++
T Consensus 460 ~~~~ 463 (490)
T 3n71_A 460 KMRE 463 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.58 E-value=0.00022 Score=72.92 Aligned_cols=129 Identities=11% Similarity=0.007 Sum_probs=64.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh------------------hHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY------------------TCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------------------~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
..+..+...+.+.|++++|+..|++..+. .|+.. .|..+..++.+.|++++|...+++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666677777777777777776654 23322 56666667777777777777777776
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHH-HHhcCChhHHHHHHHHHHh
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDA-LYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~ 336 (918)
+.. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+... ....+..+++...|..|..
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 654 3456677777777777777777777777776544 2334444444444 2234455666666666654
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.00016 Score=60.16 Aligned_cols=80 Identities=9% Similarity=-0.012 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHH
Q 043758 79 EDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIM 158 (918)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (918)
+.|+..|+.+++.++. +...+..+..+|...|++++|+..|+++.... +.+...|..+..++...|++++|+..|+..
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577788888887654 67788889999999999999999999988776 456678888889999999999999999988
Q ss_pred Hh
Q 043758 159 RK 160 (918)
Q Consensus 159 ~~ 160 (918)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.51 E-value=0.00056 Score=58.91 Aligned_cols=110 Identities=10% Similarity=-0.029 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhhHH
Q 043758 775 EIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA----NCLSIPAF 850 (918)
Q Consensus 775 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~ 850 (918)
++++|+..|++..+.| .|+.. +...|...+.+++|.+.+++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555443 11211 4444444445555555555554432 33444444444444 45555666
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 043758 851 NMFKEMIVHDHVPCLSNCNWLLNILCQ----EKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 895 (918)
..+++..+.+ ++.++..|+.+|.. .+++++|...+++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 34555666666666 666666666666666655
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.45 E-value=0.0011 Score=68.34 Aligned_cols=124 Identities=9% Similarity=-0.074 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 043758 506 AIYDAIIGHLCKEKRILEAEDMFKRMLKA---------------GIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS 570 (918)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 570 (918)
..+..+...+.+.|++++|+..|++..+. --+.+...|..+..+|.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 44677788899999999999999998861 012345678888888999999999999999998764
Q ss_pred CCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043758 571 VQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASR 631 (918)
Q Consensus 571 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 631 (918)
+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888888999999999999999988763 3467777777777777777766654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00027 Score=58.16 Aligned_cols=87 Identities=7% Similarity=-0.083 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCC------cccHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPC------LSNCN 869 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~ 869 (918)
..+..+...+...|++++|+..+++..+. .+.+...+..+..++.+.|++++|...+++.+... |.+ ...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 33444444444455555555555444432 11233344444445555555555555555554443 333 33444
Q ss_pred HHHHHHHhcCCHHHH
Q 043758 870 WLLNILCQEKHFHEA 884 (918)
Q Consensus 870 ~l~~~~~~~g~~~~A 884 (918)
.++.++...|++++|
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 444444444444443
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.39 E-value=0.0018 Score=55.64 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=25.4
Q ss_pred cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHhcC
Q 043758 181 NIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS----NRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 181 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 233 (918)
.+++++|...|++..+.| ++..+..|...|.. .+++++|..+|++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 344555555555544442 34445555555554 555555555555555543
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.36 E-value=0.00068 Score=56.23 Aligned_cols=80 Identities=10% Similarity=0.029 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 043758 778 QAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 778 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
+|+..|+++.+.. +.+...+..+..+|...|++++|+..+++..+.. +.+...|..+..++...|++++|...+++.+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666542 1245666677777777777777777777766531 2244566666667777777777777777766
Q ss_pred hC
Q 043758 858 VH 859 (918)
Q Consensus 858 ~~ 859 (918)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.30 E-value=0.001 Score=52.15 Aligned_cols=81 Identities=9% Similarity=0.050 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL 875 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (918)
..+..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|...+++..... |.+...+..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554321 2233445555555555566666666655555544 44555555555555
Q ss_pred Hhc
Q 043758 876 CQE 878 (918)
Q Consensus 876 ~~~ 878 (918)
.+.
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.17 E-value=0.0012 Score=52.97 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHh
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 858 (918)
+...+..+..+|...|++++|+..+++..+. .| +...|..+..+|...|++++|...+++.+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555666666666666666666665542 23 334555555566666666666666665543
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0022 Score=52.57 Aligned_cols=62 Identities=19% Similarity=0.088 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344445555555555555555555555431 12333444455555555555555555555554
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.09 E-value=0.00084 Score=53.87 Aligned_cols=64 Identities=8% Similarity=-0.013 Sum_probs=43.5
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
++.++..+..+|...|++++|+..|+++++.. +.+..+|..+..++...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566667777777777777777777776665 44555667777777777777777777776654
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.08 E-value=0.014 Score=55.53 Aligned_cols=82 Identities=11% Similarity=-0.009 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhcCCCCCC---cccHHHHHHHHhc-----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC-CC
Q 043758 148 LDEVLEVVNIMRKKKGLVPA---LHPYKSLFYALCK-----NIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN-RN 218 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 218 (918)
...|...+++..+ +.|+ -..|..+...|.+ .|+.++|++.|++..+.++.-+..++......++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3444444444444 2333 2344444444444 255555555555555543322344455555555542 55
Q ss_pred hHHHHHHHHHHHhc
Q 043758 219 MKMAMRLFFRMLKT 232 (918)
Q Consensus 219 ~~~A~~~~~~m~~~ 232 (918)
.+.+.+.+++....
T Consensus 256 ~~~a~~~L~kAL~a 269 (301)
T 3u64_A 256 RAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 55555555555544
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.95 E-value=1.4e-05 Score=80.36 Aligned_cols=233 Identities=11% Similarity=0.103 Sum_probs=139.4
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 281 (918)
.+..|..|..++...+...+|++.|-+. -|...|..++.+..+.|.+++-..++.-..+. ..++..-+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4567888888888888888777765322 24456778888888888888888887766654 334455667888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHH
Q 043758 282 NYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQH 361 (918)
Q Consensus 282 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 361 (918)
+|++.++..+-++++. .||..-...+.+-|...|.++.|.-+|..+-. |..+...+...+++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 8888888766554432 47777777888888888888888777754421 1111112222222221
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 043758 362 ALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVN 441 (918)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 441 (918)
|... ..-..++.+|..+..+|...+.+.-|.-+--.++-
T Consensus 189 AVda-----------------------------------------ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv 227 (624)
T 3lvg_A 189 AVDG-----------------------------------------ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 227 (624)
T ss_dssp STTT-----------------------------------------TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC
T ss_pred HHHH-----------------------------------------HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc
Confidence 1100 00112235666666677776666655544433331
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 043758 442 FGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRI 521 (918)
Q Consensus 442 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 521 (918)
.|| .+..++. .|-..|-+++-+.+++..... -.....+|+-|.-.|++- ++
T Consensus 228 ---had--eL~elv~----------------------~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 228 ---HAD--ELEELIN----------------------YYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp ---CSS--CCSGGGS----------------------SSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CT
T ss_pred ---cHH--HHHHHHH----------------------HHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CH
Confidence 122 1222333 355667777777777777643 234677888888777775 44
Q ss_pred HHHHHHH
Q 043758 522 LEAEDMF 528 (918)
Q Consensus 522 ~~a~~~~ 528 (918)
++..+-+
T Consensus 279 eKlmEHl 285 (624)
T 3lvg_A 279 QKMREHL 285 (624)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.92 E-value=0.0049 Score=48.07 Aligned_cols=61 Identities=16% Similarity=0.323 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSD 266 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 266 (918)
.+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44444445555555555555555544432 11233444444444444455555444444444
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.89 E-value=0.0038 Score=48.74 Aligned_cols=70 Identities=6% Similarity=-0.104 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHccCC---hhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 827 VPKKATYEHLLECFCANCL---SIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 827 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
+++...+..+..+++..++ .++|...+++.+..+ |.+..+...++..+.+.|++++|...|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566677777777765554 688999999998887 888899999999999999999999999999887744
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.80 E-value=0.015 Score=57.94 Aligned_cols=72 Identities=8% Similarity=-0.051 Sum_probs=49.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDL 277 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (918)
+..+|.++...+...|++++|...++++...+ |+...|..+...+...|++++|.+.+++.... .|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 56667666666666677777777777777763 56666666666777777777777777777765 34444543
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.62 E-value=0.0002 Score=72.27 Aligned_cols=214 Identities=15% Similarity=0.138 Sum_probs=139.4
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
.+..|..+.++....+++.+|++.|=+ . -|+..|..++.+..+.|.+++-++.+...++ . .-+...-+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~--~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-T--CCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccHHHHH
Confidence 455899999999999999999877633 2 3666899999999999999999999998876 3 33445566899
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc-------------------C-CC
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT-------------------G-CE 235 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------~-~~ 235 (918)
-+|++.++..+.+.++. .|+..-...+..-+...|.++.|.-+|..+..- - --
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988766443321 245555556666666666666665555432210 0 02
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHH
Q 043758 236 PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLI 315 (918)
Q Consensus 236 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 315 (918)
-++.||-.+-.+|...+.+..|.-.=-.++-. +| -...++..|-..|-+++-+.+++.-.... +...-.|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 34567888888888888877765544333322 11 11235566778888888888887766322 34455666666
Q ss_pred HHHHhcCChhHHHHHHH
Q 043758 316 DALYKHNRLMEVDELYK 332 (918)
Q Consensus 316 ~~~~~~g~~~~a~~~~~ 332 (918)
-.|++- ++++..+.++
T Consensus 271 ILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLE 286 (624)
T ss_dssp HHHHSS-CTTHHHHHHT
T ss_pred HHHHhc-CHHHHHHHHH
Confidence 555543 4555555443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.38 E-value=0.0078 Score=62.95 Aligned_cols=86 Identities=5% Similarity=-0.101 Sum_probs=52.4
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCC---C-HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-----C-CCCCH-HHHHHHH
Q 043758 772 AAGEIDQAIGLFNQMNAD---GCVP---D-KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-----G-FVPKK-ATYEHLL 837 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~---~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~ 837 (918)
..|++++|+.++++.++. -+.| + ..+++.+..+|...|++++|..++++..+. | -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788888888776653 1122 2 366777888888888888888888776521 1 11222 2455555
Q ss_pred HHHHccCChhhHHHHHHHHH
Q 043758 838 ECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 838 ~~~~~~~~~~~A~~~~~~~~ 857 (918)
..|..+|++++|+.++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 56666666666666665554
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.30 E-value=0.006 Score=48.57 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=39.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKL-ACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
.+.|++++|...|+.+++.++. +.. ++..+..+|...|++++|+..|+++.+..
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5667777777777777776543 455 77777777777888888888888777664
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.27 E-value=0.0044 Score=64.79 Aligned_cols=70 Identities=9% Similarity=-0.010 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhh
Q 043758 46 GSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICN 125 (918)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 125 (918)
.+++.+..++...|++++|+.++ +.|+.+++...-.+.+-...+++.+...|..+|++++|+.+|+++.+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~----------~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYG----------QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH----------HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHH----------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 57888888888888888888886 55677777665443222345889999999999999999999998764
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.27 E-value=0.0044 Score=49.41 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 769 GHIAAGEIDQAIGLFNQMNADGCVPDKT-VYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 769 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.+...|++++|+..|+++++.. +.+.. .|..+..+|...|++++|...+++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555554431 11233 444455555555555555555555443
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.20 E-value=0.017 Score=57.62 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=53.5
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYK 172 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 172 (918)
++.+|.++.-.+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.|++... +.|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 56677777666777788888888888888775 5666666777777788888888888888876 455555544
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.14 E-value=0.0052 Score=64.42 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhh
Q 043758 46 GSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICN 125 (918)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 125 (918)
.+++.+..++...|++++|+.++ +.++.+++...-.+.+-...+++.+...|..+|++++|+.+|+++.+
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~----------~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYG----------TRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH----------HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHH----------HHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56788888888888888888886 55677777665433222345888999999999999999999998764
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.10 E-value=0.019 Score=48.75 Aligned_cols=84 Identities=10% Similarity=0.025 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhhH
Q 043758 775 EIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAG---RLSHVFSVFYSMHKRGFVP--KKATYEHLLECFCANCLSIPA 849 (918)
Q Consensus 775 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A 849 (918)
....+.+.|.+..+.+. ++..+.-.+..++++.+ +.++++.++++..+.. .| ....+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 44556666666655443 56666666777777766 5557777777776542 24 233444445566777777777
Q ss_pred HHHHHHHHhCC
Q 043758 850 FNMFKEMIVHD 860 (918)
Q Consensus 850 ~~~~~~~~~~~ 860 (918)
.+.++.+++..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 77777777664
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.10 E-value=0.023 Score=59.58 Aligned_cols=91 Identities=9% Similarity=-0.017 Sum_probs=65.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--C-CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-----C-CCCCH-HH
Q 043758 767 INGHIAAGEIDQAIGLFNQMNAD--G-CVPD----KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-----G-FVPKK-AT 832 (918)
Q Consensus 767 i~~~~~~g~~~~A~~~~~~~~~~--~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~ 832 (918)
+..+...|++++|+.++++.++. . +.|+ ..+++.+..+|...|++++|+.++++..+. | ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999999988764 1 2222 367888888999999999999998877631 1 12222 25
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHH
Q 043758 833 YEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 833 ~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
++.|...|..+|++++|+.++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7777778888888888888888775
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.02 E-value=0.05 Score=42.30 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=41.6
Q ss_pred hHHhhhhhhhHhcCC---hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 63 SALLLYQNDFVALGN---IEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 63 ~a~~~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
+++..++.++...++ .++|..+|+++++.++. ++.++..+...+.+.|++++|+..|+++.+..
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 333344444433333 56777777777777654 56677777777777778888887777777664
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.83 E-value=0.52 Score=38.29 Aligned_cols=148 Identities=9% Similarity=0.052 Sum_probs=88.0
Q ss_pred hHHHHHHHH--HccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 043758 727 LYNDIFLLL--CGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDK-TVYNTLLK 803 (918)
Q Consensus 727 ~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 803 (918)
+...|+++- .-.|..++..++..+...+. +..-||-+|--....-+=+-..++++.+-+. +..+. .....++.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDis~C~NlKrVi~ 82 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVE 82 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-cCcHhhhcHHHHHH
Confidence 444555432 34577777777777776642 3333444433233333333334444443332 11111 11223333
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 043758 804 GLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHE 883 (918)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (918)
+|...|. +....+..+..+..+|.-+.-.+++..+.... +|+++....++.+|.+.|+..+
T Consensus 83 C~~~~n~------------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~ 143 (172)
T 1wy6_A 83 CGVINNT------------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERD 143 (172)
T ss_dssp HHHHTTC------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcc------------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhh
Confidence 3433332 22334445566788888888888888876654 8899999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 043758 884 AQIVLDVMHKRGRL 897 (918)
Q Consensus 884 A~~~~~~~~~~~~~ 897 (918)
|.+++.+.-++|+.
T Consensus 144 a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 144 ATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhH
Confidence 99999999999864
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.66 E-value=0.24 Score=57.68 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=59.6
Q ss_pred CCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 043758 703 NGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGL 782 (918)
Q Consensus 703 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 782 (918)
.|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+....+
T Consensus 665 ~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 665 VGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 36666666665432 3567888888888888888888888887642 23344445556666665555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043758 783 FNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSM 821 (918)
Q Consensus 783 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 821 (918)
-+.....| .++....+|...|++++|++++.++
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55544432 1233344455666666666665443
No 225
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.62 E-value=1.3 Score=48.25 Aligned_cols=78 Identities=6% Similarity=-0.003 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 544 TTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRA 623 (918)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (918)
+..+..+.+.+++...+.++.. .+.+...-.....+....|+..+|....+.+-..| ...+.....++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 4445566677777766654432 13344444556677777888777777777766654 33445666777777766
Q ss_pred CCHH
Q 043758 624 GEFE 627 (918)
Q Consensus 624 g~~~ 627 (918)
|...
T Consensus 150 g~lt 153 (618)
T 1qsa_A 150 GKQD 153 (618)
T ss_dssp TCSC
T ss_pred CCCC
Confidence 6543
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.24 E-value=0.54 Score=44.87 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHhhcCCC-CcchhHHHHHHHHHcC-----CChhHHHHHHHHHHhcCCCCC--CcccHHHHHHHHhcc-C
Q 043758 112 KFLEAFDYFIKICNAGVD-LNCWSYNVLIDGLCYK-----GFLDEVLEVVNIMRKKKGLVP--ALHPYKSLFYALCKN-I 182 (918)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~-g 182 (918)
....|...++++++.... .+-..|..+...|... |+.++|.+.|++.++ +.| +..++......++.. |
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcC
Confidence 466667777777666421 1234666677777663 777777777777776 334 255556666666663 7
Q ss_pred chHHHHHHHHHHHhCCCC--CChhhHHHH
Q 043758 183 RTVEAESFAREMESQGFY--VDKLMYTSL 209 (918)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l 209 (918)
+.+++.+.+++.....+. |+....|.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 777777777777776554 444444443
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.18 E-value=0.074 Score=43.33 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhh---HHHHHHHHHhCCCCC--CcccHHHHHHHHHhcCCHHHHHH
Q 043758 812 SHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIP---AFNMFKEMIVHDHVP--CLSNCNWLLNILCQEKHFHEAQI 886 (918)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 886 (918)
..+.+-+.+....| .|+..+--.+.+++.++.+..+ ++.+++.+...+ .| .....+.|+.++.+.|+|++|++
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444333322 2555555556666666665444 666666665543 22 34456666666666677777666
Q ss_pred HHHHHHhCC
Q 043758 887 VLDVMHKRG 895 (918)
Q Consensus 887 ~~~~~~~~~ 895 (918)
.++.+++..
T Consensus 96 ~~~~lL~~e 104 (126)
T 1nzn_A 96 YVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 666666654
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.18 E-value=1 Score=36.61 Aligned_cols=140 Identities=10% Similarity=0.016 Sum_probs=78.3
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCC
Q 043758 423 LCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPK 502 (918)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 502 (918)
+.-.|..++..++..+..+. .+..-++.+|-.....-+-+-..+.++.+-+.-....++++......+-.+-.
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~---- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT---- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC----
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc----
Confidence 34467888888888887763 34555666665555444444444444444444444455555555555544321
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 043758 503 PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSV 571 (918)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 571 (918)
+.......+..+...|+-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 90 -~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 -LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3334455555666666666666666664332 245555555666666666666666666666665554
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.08 E-value=1.3 Score=38.61 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=86.4
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043758 174 LFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 174 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 253 (918)
-+....+.|+++.|.++.+++ . +...|..|.......|+++-|.+.|.+.. | +..+.-.|...|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l--~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL--N----DSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh--C----CHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCC
Confidence 445566788888888887765 1 67889999999999999999999988754 2 3344445666788
Q ss_pred hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
.++-..+-+.....| -++.....+.-.|+++++.++|.+..+ |..-.-..-..|..+.|.++..+
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHH
Confidence 777666666655554 234445556678888888888865442 11111122224566677777665
Q ss_pred H
Q 043758 334 M 334 (918)
Q Consensus 334 ~ 334 (918)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.06 E-value=0.11 Score=44.14 Aligned_cols=80 Identities=10% Similarity=-0.047 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh---cHHHHHHHHHHHhhcCCCC--cchhHHHHHHHHHcCCChhHHHH
Q 043758 79 EDALRHFDRLISKNIVPIKLACVSILRGLFAEE---KFLEAFDYFIKICNAGVDL--NCWSYNVLIDGLCYKGFLDEVLE 153 (918)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 153 (918)
..+.+.|.+....+. ++..+...+..++++.+ ++++++.+++...+.+ .| +...+..+.-++.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 455666776666554 57777777777887766 7778999998888775 23 45677777788888999999999
Q ss_pred HHHHHHh
Q 043758 154 VVNIMRK 160 (918)
Q Consensus 154 ~~~~~~~ 160 (918)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998887
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.02 E-value=0.63 Score=54.15 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=103.1
Q ss_pred hhchhcHHHHHH-HHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH
Q 043758 107 LFAEEKFLEAFD-YFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV 185 (918)
Q Consensus 107 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 185 (918)
....+++++|.+ ++.. ++ +......++..+.+.|..+.|+++.+.-.. -+......|+++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCCHH
Confidence 345678888866 4421 11 122347777888888999888876543221 234456779999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 186 EAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
+|.++.+.+ .+...|..|...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 998885433 2678999999999999999999999998752 3445555556777777666666665
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
..| -++.....|.+.|++++|.+++.++.
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 544 12334455667788888877776554
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.82 E-value=0.14 Score=40.98 Aligned_cols=61 Identities=11% Similarity=-0.051 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 799 NTLLKGLCQAGRLSHVFSVFYSMHKR------GFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
..+...+.+.|++..|...++...+. +-.+....+..+..++.+.|+++.|...+++++..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34444555555555555555444321 01123334555555555555555555555555544
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.22 E-value=0.14 Score=40.89 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=43.6
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC------CCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAG------VDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
+..-+..++..+...|++..|+.+|+.+.+.. ..+....+..+..++.+.|+++.|+..++.+.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33455577777777788888888777766431 123445667777777777777777777777765
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.06 E-value=1.4 Score=38.43 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=80.7
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHH
Q 043758 212 GYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDA 291 (918)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 291 (918)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 456789999999998765 2667899999999999999999999998753 3455666778899888
Q ss_pred HHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 292 ALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKM 334 (918)
Q Consensus 292 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (918)
-..+-+.....| -++....++...|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 877776666544 3566777888899999999998554
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.93 E-value=0.25 Score=41.20 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=46.8
Q ss_pred cHHhHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCH-HHHHHHHHH------HHHcCChhHHHHHHHHHHhCC
Q 043758 759 NQVTFCILINGHIAAGEI------DQAIGLFNQMNADGCVPDK-TVYNTLLKG------LCQAGRLSHVFSVFYSMHKRG 825 (918)
Q Consensus 759 ~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~ 825 (918)
|..+|...+....+.|++ ++.+++|++.... ++|+. ..|...+.. +...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445666666666666777 6667777766664 44532 111111111 122345555555555554321
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 826 FVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 826 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
-.- ...|-....=-.++|+...|.+++.+.+..+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 111 3333333333334445555555555544443
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.92 E-value=1.2 Score=37.23 Aligned_cols=60 Identities=12% Similarity=-0.043 Sum_probs=47.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHH
Q 043758 587 KKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIA 647 (918)
Q Consensus 587 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 647 (918)
..+++++|.++|+.+++.+ .--..+|......-.+.|+...|.+++.+.+..+.+|....
T Consensus 72 ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 3478999999999987652 22377888888888899999999999999998776665433
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.87 E-value=0.53 Score=38.36 Aligned_cols=67 Identities=7% Similarity=-0.056 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHcCChhH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 793 PDKTVYNTLLKGLCQAGRLSH---VFSVFYSMHKRGFVP--KKATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 793 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
|+..+--.+..++++.....+ ++.++++..+.+ .| .....-.+.-++.+.|++.+|.+.++.+++..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 344444444445555444333 555555554321 12 11122223334555555555555555555543
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.58 E-value=22 Score=40.51 Aligned_cols=153 Identities=12% Similarity=0.008 Sum_probs=66.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-----CcHHHHHHHHHHHHc
Q 043758 482 KWGNLDSALDILDQMEVRGPKPS--VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGI--D-----PDEVFFTTMINGYLQ 552 (918)
Q Consensus 482 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~ 552 (918)
..|+.++++.++......+...+ ...-..+.-+....|..+++.+++.......- . +....-..+.-+..-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 44566666666665543211112 22333334445555555566776666554210 0 111111222222222
Q ss_pred CCC-hHHHHHHHHHHHhCCCCCCchhHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHH
Q 043758 553 NRK-PIEACQLFEKMKENSVQPGSYPYT--ALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINH--FLRAGEFE 627 (918)
Q Consensus 553 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~ 627 (918)
.|. -+++.+.+..+.... .+...... ++...+...|+.+....++..+.+.. +..+...+..+ +.-.|+.+
T Consensus 466 ~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGG
T ss_pred cCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChH
Confidence 332 245555555555432 11111111 22223345566666666666655431 22233333333 33556666
Q ss_pred HHHHHHHHHHH
Q 043758 628 FASRLENLMVT 638 (918)
Q Consensus 628 ~a~~~~~~~~~ 638 (918)
.+..+.+.+..
T Consensus 542 ~~~~li~~L~~ 552 (963)
T 4ady_A 542 LADDLITKMLA 552 (963)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666666543
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.53 E-value=0.25 Score=50.86 Aligned_cols=76 Identities=9% Similarity=-0.029 Sum_probs=52.4
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCcccchhhhc
Q 043758 834 EHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK-----RGRLPCTSTRGFWRK 908 (918)
Q Consensus 834 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~ 908 (918)
..++.++...|++.+|...+..+.... |-+-..|..++.+|.+.|+..+|.+.|+++.+ .|++|+..+..+.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344555667777777777777776655 66666777777777777777777777777644 477777777666655
Q ss_pred cc
Q 043758 909 HF 910 (918)
Q Consensus 909 ~~ 910 (918)
.+
T Consensus 254 il 255 (388)
T 2ff4_A 254 IL 255 (388)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.80 E-value=1.2 Score=36.35 Aligned_cols=68 Identities=4% Similarity=-0.064 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHccCCh---hhHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 827 VPKKATYEHLLECFCANCLS---IPAFNMFKEMIVHDHVP-CLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 827 ~p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.|+..+--.+.+++.++.+. .+++.+++.+.+.+ |. ....++.|+.++.+.|+|++|++..+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 44555555555555555543 23555555555443 22 24455666666666666666666666665544
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.52 E-value=2.6 Score=35.01 Aligned_cols=69 Identities=9% Similarity=-0.066 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 792 VPDKTVYNTLLKGLCQAGR---LSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 792 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
.|+..+--.+..++++... ..+++.+++++.+.+-.-....+-.+.-++++.|++.+|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4455555555556665553 33455666665542211122223333345666666666666666666654
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.41 E-value=2.2 Score=47.45 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=28.1
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVM 891 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 891 (918)
..|+++.|+++.++..... |.+..+|..|+.+|.+.|+|+.|+-.++.+
T Consensus 349 ~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4455555666555555543 445556666666666666666665555554
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.12 E-value=1.5 Score=37.59 Aligned_cols=70 Identities=9% Similarity=0.010 Sum_probs=32.0
Q ss_pred cCCCCCh--hhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCcH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 719 IEFMPNL--YLYNDIFLLLCGVGRMDDAYDHFQMMKRE-GLRPNQ-------VTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 719 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
.|..|.. ..+..-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4444432 33344445555666666666655554332 112221 1334455566666666666666666544
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.35 E-value=7.3 Score=39.91 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH-----hCCCCCCcccHHHHHH
Q 043758 799 NTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMI-----VHDHVPCLSNCNWLLN 873 (918)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~l~~ 873 (918)
..++..+...|++.+|+..+..+... -+-+...+..++.++.+.|+..+|+..|+++. +.|+.|.+..-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34555666667777777666666542 12355666777777777777777776666653 3466666655544444
Q ss_pred HHHhcCCHH------HHHHHHHHHHhCCCC
Q 043758 874 ILCQEKHFH------EAQIVLDVMHKRGRL 897 (918)
Q Consensus 874 ~~~~~g~~~------~A~~~~~~~~~~~~~ 897 (918)
++....... .+..+...+.+....
T Consensus 254 il~~~~~~~~~~~~~~l~~i~~~L~~~~~~ 283 (388)
T 2ff4_A 254 ILRQQPLDAKKSAKTTAAGTVTVLDQRTMA 283 (388)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHHHHHHBCT
T ss_pred HHcCCCCCCCCCCccccchhhhHhhccccc
Confidence 444322211 344455555444443
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.43 E-value=21 Score=37.29 Aligned_cols=190 Identities=11% Similarity=0.144 Sum_probs=115.2
Q ss_pred CChhHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCcHHh--HHHHHHHHHhcCC
Q 043758 704 GKKGTVQKIVLKVKDI-----EFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE-GLRPNQVT--FCILINGHIAAGE 775 (918)
Q Consensus 704 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~--~~~li~~~~~~g~ 775 (918)
|+++.|.+.+..+.+. ...-.......++..|...|+++...+.+..+... |..+...+ .+.++.-......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5666776666555432 22234566778889999999999988887766543 33333222 1222222222333
Q ss_pred HHH--HHHHHHHHHhC--C-CCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHh--CCCCCCH---HHHHHHHHHHHc
Q 043758 776 IDQ--AIGLFNQMNAD--G-CVP---DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK--RGFVPKK---ATYEHLLECFCA 842 (918)
Q Consensus 776 ~~~--A~~~~~~~~~~--~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~---~~~~~l~~~~~~ 842 (918)
.+. -..+.+.+... | +-. .......|...|...|++.+|..++.++.. .|..+.. ..+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 222 22222222111 1 111 123345678889999999999999998863 2322222 245555667889
Q ss_pred cCChhhHHHHHHHHH----hCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 843 NCLSIPAFNMFKEMI----VHDHVPC--LSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 843 ~~~~~~A~~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
.+++..|..+++++. ....+|+ ...+...+..+...++|.+|.+.|..+.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999888863 2221232 34567888899999999999988887754
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.18 E-value=0.94 Score=38.80 Aligned_cols=129 Identities=13% Similarity=0.021 Sum_probs=70.8
Q ss_pred cCCCCcHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 754 EGLRPNQV--TFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDK-------TVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 754 ~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.|+.|... .+..-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++.+|...|++...
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556543 3334456778889999999888876654 233431 3566777888999999999999988653
Q ss_pred C-CCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 824 R-GFVPKKA-TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 824 ~-~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
. ...|... +...+.. ...... ....+.+.+.-+.++.+|.+.|++++|..+++.+....
T Consensus 92 ~~k~l~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHhcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 1 1111111 1100000 000000 01123345667788899999999999999887654333
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.25 E-value=14 Score=30.70 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=39.0
Q ss_pred CcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 043758 758 PNQVTFCILINGHIAAGE---IDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK 830 (918)
Q Consensus 758 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (918)
|+..+-..+..++.++.+ ..+++.+++.+...+..-...+...+.-++.+.|++++|.++.+.+.+ +.|+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 444444445555555543 335566666665542222335555556666677777777777776665 45544
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.71 E-value=41 Score=35.05 Aligned_cols=267 Identities=10% Similarity=0.037 Sum_probs=137.0
Q ss_pred CChHHHHHHHHHHHhC-----CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043758 554 RKPIEACQLFEKMKEN-----SVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEF 628 (918)
Q Consensus 554 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 628 (918)
++++.|++.+..+.+. +..........++..|...|+++...+.+.-+....... ......+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~-------- 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKV-------- 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHH--------
Confidence 5677777776655432 223344556677777777888877777666655442121 11112222211
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhH
Q 043758 629 ASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGT 708 (918)
Q Consensus 629 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 708 (918)
...+... ..++..+...++........ ...+.... -.+....+...+...|++.+
T Consensus 101 -~~~l~~~----~~~d~~~~~~~i~~l~~vte-~kiflE~e-------------------rarl~~~La~i~e~~g~~~e 155 (445)
T 4b4t_P 101 -MEYLKSS----KSLDLNTRISVIETIRVVTE-NKIFVEVE-------------------RARVTKDLVEIKKEEGKIDE 155 (445)
T ss_dssp -HHHHHHH----CTTHHHHHHHHHHCCSSSSS-CCCCCCHH-------------------HHHHHHHHHHHHHHHTCHHH
T ss_pred -HHHHhcC----CchhHHHHHHHHHHHHHHhc-cchHHHHH-------------------HHHHHHHHHHHHHHccCHHH
Confidence 1111111 12233344444433221110 00000000 00112345667778899999
Q ss_pred HHHHHHHHHhc--CCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHH----cCCCCcH--HhHHHHHHHHHhcCCHH
Q 043758 709 VQKIVLKVKDI--EFMPN---LYLYNDIFLLLCGVGRMDDAYDHFQMMKR----EGLRPNQ--VTFCILINGHIAAGEID 777 (918)
Q Consensus 709 a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~li~~~~~~g~~~ 777 (918)
|.+++..+... +..+. +..+...+..|...+++..|..++.++.. ....|+. ..+...+..+...+++.
T Consensus 156 A~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~ 235 (445)
T 4b4t_P 156 AADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYL 235 (445)
T ss_dssp HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999987632 21121 35667777888899999999988887642 2222222 24455666677888999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--CChhhHH
Q 043758 778 QAIGLFNQMNAD-GCVPDKTVY----NTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN--CLSIPAF 850 (918)
Q Consensus 778 ~A~~~~~~~~~~-~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~A~ 850 (918)
+|-..|.++... ...-+...+ ..++.+..-++....-..++.........++...+..++.+|... .+++.+.
T Consensus 236 ~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~ 315 (445)
T 4b4t_P 236 EVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQ 315 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHH
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHH
Confidence 998888777653 111233222 222233333443333344444433322335566777777775432 2344444
Q ss_pred HHHH
Q 043758 851 NMFK 854 (918)
Q Consensus 851 ~~~~ 854 (918)
+.+.
T Consensus 316 ~~~~ 319 (445)
T 4b4t_P 316 KTYE 319 (445)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 4443
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.64 E-value=8.7 Score=42.80 Aligned_cols=127 Identities=11% Similarity=0.037 Sum_probs=69.3
Q ss_pred HHHHHHhccCc-hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHhc------CCCCChh-----
Q 043758 173 SLFYALCKNIR-TVEAESFAREMESQGFYVDKLMYTSLINGYCSNR-NMKMAMRLFFRMLKT------GCEPDSY----- 239 (918)
Q Consensus 173 ~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------~~~p~~~----- 239 (918)
+++..+...++ ++.|..+|+++.+..+..+......++..+...+ +--+|.+++.+..+. ..++...
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444444555 4778888888887633211112233333333332 223344544443321 1111111
Q ss_pred ------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 240 ------TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 240 ------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
....-...|...|+++.|+.+-++..... +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111233556778888888888777663 4456678888888888888888887777764
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.14 E-value=53 Score=35.85 Aligned_cols=51 Identities=10% Similarity=-0.088 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Q 043758 512 IGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEK 565 (918)
Q Consensus 512 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 565 (918)
+..+...|....|...+..+... .+......+.......|.++.++.....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 44566778888888888877753 2333333444445566777766655443
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.15 E-value=13 Score=30.50 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=34.4
Q ss_pred CcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 043758 758 PNQVTFCILINGHIAAGE---IDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK 830 (918)
Q Consensus 758 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (918)
|+..+--.+..++.++.+ ..+++.+++.+...+..-...++..+.-++.+.|++++|.++.+.+.+ +.|+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 333333334444444433 334555555555433111234455555556666666666666666654 34443
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.30 E-value=5 Score=30.73 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 776 IDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 776 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.=+..+-++.+....+.|++....+.+.+|.+-+++..|+++++-...
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555556666666666666666666666666666665553
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.11 E-value=14 Score=28.30 Aligned_cols=46 Identities=7% Similarity=0.093 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 744 AYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 744 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
..+-++.+....+-|++....+.+.||.+.+++.-|+++++-++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333444444444455555555555555555555555555544443
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.17 E-value=45 Score=32.40 Aligned_cols=123 Identities=15% Similarity=-0.001 Sum_probs=62.0
Q ss_pred HHHHHcCCchhHHhhhhhhh---HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHH----HHHHHhh
Q 043758 53 KKLIKFGQSQSALLLYQNDF---VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFD----YFIKICN 125 (918)
Q Consensus 53 ~~l~~~~~~~~a~~~~~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~ 125 (918)
+.....|++=||.+.|+.+. .+++++++|++++-.... .+.+.|+...|-+ +.+...+
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~ 85 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDL 85 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHH
Confidence 34456677777777777665 556777777777654432 1233344433333 3444445
Q ss_pred cCCCCcchhHHHHHHHHHcCCChh-HHHHHHHHH----HhcCC--CCCCcccHHHHHHHHhccCchHHHHHHH
Q 043758 126 AGVDLNCWSYNVLIDGLCYKGFLD-EVLEVVNIM----RKKKG--LVPALHPYKSLFYALCKNIRTVEAESFA 191 (918)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~----~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 191 (918)
.+++++......++..+.....-+ .=..+.+.+ .+ .+ ...+...+..+...|.+.|++.+|+.-|
T Consensus 86 ~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 86 AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIK-FSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHH-TSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 566666666666665554422111 111222222 22 11 1123444555555566666666655544
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.01 E-value=8.6 Score=31.28 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 043758 80 DALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLI 139 (918)
Q Consensus 80 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 139 (918)
+.++-++.+...+..|++....+.++++.+-+++.-|+.+|+-+...- .+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344555555555555666666666666666666666666666555432 22333444443
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.47 E-value=49 Score=32.42 Aligned_cols=82 Identities=7% Similarity=-0.059 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHH
Q 043758 793 PDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLL 872 (918)
Q Consensus 793 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 872 (918)
-|+.....+...|.+.+++.+|...|- . |-.++...+..++.-+...+...++--++. ..+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfia---------------RaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCA---------------RAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHH---------------HHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHH---------------HHH
Confidence 367778888889999999998887772 2 333444566665554444443333322222 234
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 043758 873 NILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 873 ~~~~~~g~~~~A~~~~~~~~~ 893 (918)
--|...++...|...++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 456777888888887766554
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.76 E-value=20 Score=42.96 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHH
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS----YTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 281 (918)
|.-++..+-+.|.++.+.++-....+...+.+. ..|..+.+.+...|++++|-..+-.+.....+. .....|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~--~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK--SCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH--HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH--HHHHHHHH
Confidence 444555555555555555555444432111111 134555555555666666655555554433221 22222322
Q ss_pred HHHh------------cCCHHHHHHHHHHHhhCC--CCCCcchHHHHHHHHHhcCChhHHHH-HHHHHHh
Q 043758 282 NYCR------------EGEVDAALMLLNSKVSSN--LAPSVHCYTVLIDALYKHNRLMEVDE-LYKKMLA 336 (918)
Q Consensus 282 ~~~~------------~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~ 336 (918)
..+. .|..++..+++....+.. ....+..|..|=.-++.+|++..|-. +|+.+.+
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 2222 345566666665432211 11112335555555677788776555 4555543
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.19 E-value=9.6 Score=29.02 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=40.3
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 043758 739 GRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVF 818 (918)
Q Consensus 739 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 818 (918)
.+.++|..+-+-+...+. ....-.+-+..+...|++++|..+.+.+ ..||...|..+ +-.+.|..+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 356666666666655432 1111111222355666776666665443 24666655544 334566666666666
Q ss_pred HHHHhC
Q 043758 819 YSMHKR 824 (918)
Q Consensus 819 ~~~~~~ 824 (918)
.++...
T Consensus 93 ~~la~s 98 (116)
T 2p58_C 93 NRLARS 98 (116)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 555433
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.78 E-value=77 Score=37.99 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFL 464 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 464 (918)
..|..+.+.+...|++++|...+..+..... -...+..++..++..+..
T Consensus 939 ~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 939 AITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 3577788888888999998888877765432 234566666666555543
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.63 E-value=9 Score=29.10 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=39.1
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 043758 739 GRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVF 818 (918)
Q Consensus 739 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 818 (918)
.+.++|..+-+-+...+. ....-.+-+..+...|++++|..+.+.+ ..||...|..+ +-.+.|..+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 346666666666555432 1111111122345566666666554433 24565555443 334566666666666
Q ss_pred HHHHhC
Q 043758 819 YSMHKR 824 (918)
Q Consensus 819 ~~~~~~ 824 (918)
.++...
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 555543
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.02 E-value=28 Score=28.42 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 778 QAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLE 838 (918)
Q Consensus 778 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (918)
+..+-++.+....+.|++......+.+|.+-+++.-|+++|+-...+ ..+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44555566666677788888888888888888888888888777643 3334445655553
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.18 E-value=7.7 Score=36.40 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=36.6
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 804 GLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
.+.+.|.+++|++.+..-++. -+-|...-..++..+|-.|+++.|.+-++.+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 355667777777777666653 2335555566666777777777777777777665
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.85 E-value=20 Score=37.20 Aligned_cols=98 Identities=5% Similarity=-0.068 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHH--H
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN--QVTFCILINGHIAAGEIDQAIGLFNQMNAD---GCVPDKTV--Y 798 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~--~ 798 (918)
.++..+...|.+.|+++.|.+.|.++...-..+. ...+...+..+...+++..+...+.++... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566677777777777777777777765422222 235566667777777777777777776543 22222211 1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 799 NTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
..-+..+...+++.+|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111223355677777776666543
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.16 E-value=27 Score=26.72 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=25.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
..+|+|++|..+.+... .||...|-++.. -+.|-.+++...+..+-..|
T Consensus 51 mNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 51 MNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 55556665555544332 456656655543 23455555555554554444
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.22 E-value=1.8e+02 Score=33.36 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHH--HHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHH--HHhcCChhHHHHH
Q 043758 522 LEAEDMFKRMLKAGIDPDEVFFT--TMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISG--LVKKGMVDLGCMY 597 (918)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~ 597 (918)
+++.+.+..+.... .+...... .+...+.-.|+.+....++..+.+. .+..+...+..+ +...|+.+.+..+
T Consensus 471 eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 471 IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 45566666665532 11111112 2233455677877778888777764 233333334434 4478999999999
Q ss_pred HHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043758 598 LDRMLADGFVPNVVLY--TALINHFLRAGEFEFASRLENLMVTN 639 (918)
Q Consensus 598 ~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 639 (918)
.+.+.... .|....- .++.-+|+-.|+.....++++.+...
T Consensus 547 i~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 547 ITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC
Confidence 88888642 2222222 23445567788988777788888753
No 266
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=66.96 E-value=95 Score=30.06 Aligned_cols=71 Identities=7% Similarity=-0.008 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 043758 810 RLSHVFSVFYSMHKRGFVPKKA--TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIV 887 (918)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 887 (918)
+..+..++-.-+....+.|... ++...+...+|.+++..|..+.+++++.+ |+ ....++|+++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~-p~--------------~~~a~qArki 249 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII-SS--------------GPRAEQARKI 249 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CS--------------SHHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC--------------HHHHHHHHHH
Confidence 3455556655555556666554 66777888899999999999999999886 32 1144667777
Q ss_pred HHHHHhCC
Q 043758 888 LDVMHKRG 895 (918)
Q Consensus 888 ~~~~~~~~ 895 (918)
+....+++
T Consensus 250 l~~ce~~~ 257 (325)
T 3mv2_A 250 KNKADSMA 257 (325)
T ss_dssp HHHHHTSC
T ss_pred HHHHhcCC
Confidence 77765543
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.83 E-value=1e+02 Score=29.97 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=72.7
Q ss_pred HccCChhHHHH----HHHHHHHcCCCCcHHhHHHHHHHHHhcCCHH-HHHHHHHHHHh----CC--CCCCHHHHHHHHHH
Q 043758 736 CGVGRMDDAYD----HFQMMKREGLRPNQVTFCILINGHIAAGEID-QAIGLFNQMNA----DG--CVPDKTVYNTLLKG 804 (918)
Q Consensus 736 ~~~g~~~~A~~----~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~----~~--~~p~~~~~~~l~~~ 804 (918)
.+.|+...|.. +++...+.+++++......++..+..-..-+ .=..+.+.+++ .| ..-++..+..+...
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 34455444433 3444445566666666555555544322111 11223333332 22 22367888888899
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN---CLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHF 881 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 881 (918)
|.+.|++.+|...|-. |-.-+...+..++.-+... |...++--++. ..+--|...|+.
T Consensus 144 ~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~---------------RaVL~yL~l~n~ 204 (312)
T 2wpv_A 144 LLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS---------------RLVFNYLFISNI 204 (312)
T ss_dssp HHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH---------------HHHHHHHHTTBH
T ss_pred HhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH---------------HHHHHHHHhcCH
Confidence 9999999988876631 1111344555555433333 33333222222 233456677889
Q ss_pred HHHHHHHHHHHh
Q 043758 882 HEAQIVLDVMHK 893 (918)
Q Consensus 882 ~~A~~~~~~~~~ 893 (918)
..|..+++...+
T Consensus 205 ~~A~~~~~~f~~ 216 (312)
T 2wpv_A 205 SFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887653
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=61.73 E-value=1.3e+02 Score=29.61 Aligned_cols=172 Identities=12% Similarity=0.085 Sum_probs=92.7
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
..|.++..-|.+++++++|++++..-. ..+.+.|+...|.+ -+.-++
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~D------------------L~~llv 82 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGD------------------LAVLLV 82 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHH------------------HHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHH------------------HHHHHH
Confidence 456677777888889988888765432 12333344333332 233444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH----CC--CCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRIL-EAEDMFKRMLK----AG--IDPDEVFFTTMINGYLQNRKPIEACQLFEKM 566 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 566 (918)
+...+.+.++|......++..+.....-+ .-.++.+++.+ .| ..-|+.....+...|.+.+++.+|..-|-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-- 160 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-- 160 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--
Confidence 55566677777777777777666554311 12333333332 12 23356666667777777777777776662
Q ss_pred HhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 567 KENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 567 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
. |-.+....+..++.-+...+...++ +..+-.+++ -|.-.++...|..+++...
T Consensus 161 l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 161 L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 1 2223334555554444443332221 222222333 2455677777777776665
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.04 E-value=1e+02 Score=27.67 Aligned_cols=49 Identities=6% Similarity=-0.113 Sum_probs=20.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC
Q 043758 236 PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGE 288 (918)
Q Consensus 236 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 288 (918)
++...-...+.++...|..+ +...+..+.. .++..+....+.++.+.+.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 34444444444444444432 2233333332 2344444444444444443
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=57.62 E-value=52 Score=25.14 Aligned_cols=75 Identities=16% Similarity=0.028 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHH--HHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 043758 184 TVEAESFAREMESQGFYVDKLMYTSLI--NGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLY 261 (918)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 261 (918)
.++|..+-+.+...+ + .-.-+|| ..+...|+|++|..+.+..- .||...|..|. -.+.|-.+.+...+
T Consensus 22 HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 22 HEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp HHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 455555555555542 1 2222222 33445666666665543322 45555554443 23555555555555
Q ss_pred HHHHhCC
Q 043758 262 SQMSDWG 268 (918)
Q Consensus 262 ~~~~~~~ 268 (918)
..+...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5555444
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.23 E-value=79 Score=32.68 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 577 PYTALISGLVKKGMVDLGCMYLDRMLAD--GFVPNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 577 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
+...+...|.+.|+++.|.+.+.++... +..--...+-.++..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556667777777777777777777664 222334566666777777777777777776664
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.48 E-value=74 Score=28.36 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=40.2
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcc
Q 043758 588 KGMVDLGCMYLDRMLADGFV-PNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFD 644 (918)
Q Consensus 588 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 644 (918)
.+....+..+|..|...|+- --...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33455777788877777543 3455677777777788888888888888777776664
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.72 E-value=35 Score=30.36 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=37.5
Q ss_pred cCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 808 AGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
++...++..+|..|..+|+-- -...|......+...|++.+|.++++.-+..+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344668888888887776654 33456667777777888888888888776554
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=52.35 E-value=1.6e+02 Score=27.80 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=34.5
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
+.+.|+++++......-++..+. |......|+..+|-.|++++|..-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556666666666666665444 6666666667777777777777666666554
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.37 E-value=1.4e+02 Score=26.69 Aligned_cols=155 Identities=8% Similarity=-0.087 Sum_probs=77.2
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 722 MPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTL 801 (918)
Q Consensus 722 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 801 (918)
.++...-...+..+.+.|.. .+...+.++.. .+|...-...+.++...|+.+ +...+..+.. .++...-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 34555555555556555553 33333333333 244444445555555555432 3333333332 2455555566
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHF 881 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 881 (918)
+.++.+.|.. ++...+.++. -.|+...-...+.++.+.|.. ++...+..+.. .+++.+....+.++.+.|.
T Consensus 102 ~~aL~~~~~~-~~~~~L~~~l---~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 102 AVALGQIGDE-RAVEPLIKAL---KDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHHCCG-GGHHHHHHHT---TCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcH-HHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 6666666653 3444444444 245655555556666666553 34444444442 3455555666666666665
Q ss_pred HHHHHHHHHHHh
Q 043758 882 HEAQIVLDVMHK 893 (918)
Q Consensus 882 ~~A~~~~~~~~~ 893 (918)
.++...+..+.+
T Consensus 173 ~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 344444444443
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.94 E-value=1.3e+02 Score=25.37 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcc
Q 043758 592 DLGCMYLDRMLADGFV-PNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFD 644 (918)
Q Consensus 592 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 644 (918)
+.+..+|..|..+|+- --+..|......+...|++.+|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4578888888888543 3456778888888888999999999988888777774
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=39.21 E-value=3.2e+02 Score=27.62 Aligned_cols=166 Identities=9% Similarity=-0.049 Sum_probs=82.7
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFG-YRP---LVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSA 489 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 489 (918)
.+...+...|.+.|+.++...++......= ..| .....+.++..+.... +..+.-
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~---------------------~~~~~~ 78 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD---------------------AGTGIE 78 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSC---------------------CCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCC---------------------CcHHHH
Confidence 456778889999999999998888765320 011 1122344444443322 222222
Q ss_pred HHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-----HHHHHHHHHHHHcCCChHH
Q 043758 490 LDILDQMEVRGPKPSVA------IYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD-----EVFFTTMINGYLQNRKPIE 558 (918)
Q Consensus 490 ~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~ 558 (918)
.++..+..+.... .-. +=.-++..|...|++.+|.+++.++.+.--..| ..++..-+..|...++..+
T Consensus 79 ~~~~~~~~~~a~~-~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k 157 (394)
T 3txn_A 79 VQLCKDCIEWAKQ-EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPK 157 (394)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHH
Confidence 3333333221100 111 112466677777777777777777665210111 2234444556666777777
Q ss_pred HHHHHHHHHhC--CCCCCchhHHHH----HHHHH-hcCChhHHHHHHHHH
Q 043758 559 ACQLFEKMKEN--SVQPGSYPYTAL----ISGLV-KKGMVDLGCMYLDRM 601 (918)
Q Consensus 559 A~~~~~~~~~~--~~~~~~~~~~~l----~~~~~-~~g~~~~a~~~~~~~ 601 (918)
+...+...... .+.+++.....+ ...+. ..+++..|...|-+.
T Consensus 158 ~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 158 ARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 77666665432 121222222111 12234 566666666555443
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.06 E-value=2.3e+02 Score=26.51 Aligned_cols=49 Identities=10% Similarity=-0.050 Sum_probs=25.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCccHh--hHHHHHHHHHhcCCHHHHHHHHH
Q 043758 249 FKMGLFDKGWVLYSQMSDWGFQPNMV--TDLIMISNYCREGEVDAALMLLN 297 (918)
Q Consensus 249 ~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~ 297 (918)
+..+......++++.+.+.|..++.. ...+.+...+..|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34455555566666666666544422 11223444555666665555444
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.56 E-value=58 Score=27.95 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 812 SHVFSVFYSMHKRGFVPK-KATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
+++..+|..|..+|+--. ...|......+...|++.+|.+++..-+..+
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 446666666666655443 3345555555666666666666666655444
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.19 E-value=1.6e+02 Score=27.23 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=52.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc--CCCC----cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 730 DIFLLLCGVGRMDDAYDHFQMMKRE--GLRP----NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLK 803 (918)
Q Consensus 730 ~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 803 (918)
--++.+....++++|..++++..+. ++++ +.......+..-.....-.-+..+.+++ .. .+++......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3478888889999999998876542 2322 1111122222222222222333344444 22 455666677778
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 043758 804 GLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~ 822 (918)
.+.+.|+.++|.++|=+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8888888888888886664
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.82 E-value=1.9e+02 Score=24.73 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccH
Q 043758 592 DLGCMYLDRMLADGFV-PNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDL 645 (918)
Q Consensus 592 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 645 (918)
+....+|..|..+|+- --+..|......+...|++.+|.++|..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4466778888777543 34556777777788888888888888888877777753
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.94 E-value=1.3e+02 Score=25.36 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCCcch-hHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 116 AFDYFIKICNAGVDLNCW-SYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 116 A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
+.++|..|...++..... .|......+-..|++.+|.++|+.-++
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555443332 344444555556666666666666555
No 283
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=34.05 E-value=1.4e+02 Score=28.85 Aligned_cols=133 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---
Q 043758 732 FLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQA--- 808 (918)
Q Consensus 732 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 808 (918)
...+...|++++|+..|+.++ +...+.......+.+++.++.....+ ......+..-.+.
T Consensus 109 gyk~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icre-------Yilal~iEl~Rr~l~~ 171 (320)
T 3mkr_B 109 CYQLTTVGKFEEAVEKFRSIL----------LSVPLLVVDNKQEIAEAQQLITICRE-------YIVGLSMETERKKLPK 171 (320)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----------HHGGGCCCCSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSCC
T ss_pred HHHHHhcCCHHHHHHHHHHHH----------HHhhheeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccc
Q ss_pred ---CChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 043758 809 ---GRLSHVFSVFYSMHKRGFVPKKA--TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHE 883 (918)
Q Consensus 809 ---g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (918)
.+..+..++-.-+....+.|... ++...+...+|.+++..|..+.+++++.+..+... ++
T Consensus 172 ~~~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~---------------~q 236 (320)
T 3mkr_B 172 ETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVA---------------QQ 236 (320)
T ss_dssp CSHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHH---------------HH
T ss_pred CCchhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH---------------HH
Q ss_pred HHHHHHHHHhCCC
Q 043758 884 AQIVLDVMHKRGR 896 (918)
Q Consensus 884 A~~~~~~~~~~~~ 896 (918)
|++++....+++.
T Consensus 237 Arkil~~ce~~~~ 249 (320)
T 3mkr_B 237 TRKILSACEKNPT 249 (320)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCC
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.67 E-value=2.7e+02 Score=25.19 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=10.3
Q ss_pred HcCCChhHHHHHHHHHHh
Q 043758 143 CYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~ 160 (918)
++.|+.+.+..+++.+.+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 345666666666665544
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.63 E-value=1.6e+02 Score=24.00 Aligned_cols=64 Identities=8% Similarity=0.173 Sum_probs=34.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 043758 729 NDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGE--IDQAIGLFNQMNADGCVP 793 (918)
Q Consensus 729 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p 793 (918)
..++.-|...|+.++|...++++...... .......+..++-+.++ .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45666677777888887777776421111 11233444445554432 345556676666655443
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=32.50 E-value=3.8e+02 Score=26.56 Aligned_cols=66 Identities=8% Similarity=0.145 Sum_probs=39.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 043758 728 YNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGE--IDQAIGLFNQMNADGCVPD 794 (918)
Q Consensus 728 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p~ 794 (918)
.+.++.-|...|+.++|...++++...... .......+..++-+.++ .+....++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 346677777788888888888887532111 12234445555555433 3456677777777655443
No 287
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative, riken structural genomics/proteomics initiative, RSGI; 2.07A {Geobacillus kaustophilus}
Probab=32.48 E-value=3.3e+02 Score=26.21 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=6.1
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHH
Q 043758 631 RLENLMVTNQIEFDLIAYIALVSG 654 (918)
Q Consensus 631 ~~~~~~~~~~~~p~~~~~~~ll~~ 654 (918)
++|+++ |.+|+...||++++.
T Consensus 83 ~V~~~V---G~EPSG~~FNsi~~L 103 (308)
T 2pby_A 83 EVFHKV---GMEPTDYPFHSIAKL 103 (308)
T ss_dssp HHHHHB---CSCC-----------
T ss_pred HHHHHh---CCCCCCCCCcchhhh
Confidence 444444 888888888888643
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.24 E-value=3.3e+02 Score=25.38 Aligned_cols=22 Identities=0% Similarity=-0.108 Sum_probs=10.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC
Q 043758 285 REGEVDAALMLLNSKVSSNLAP 306 (918)
Q Consensus 285 ~~g~~~~A~~~~~~~~~~~~~~ 306 (918)
..|+.....++++.+.+.|..+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCS
T ss_pred HccccchHHHHHHHHHHcCCCC
Confidence 3444433344455555554433
No 289
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.40 E-value=1.6e+02 Score=24.57 Aligned_cols=37 Identities=8% Similarity=0.009 Sum_probs=16.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043758 773 AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAG 809 (918)
Q Consensus 773 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 809 (918)
.+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3334445555555544433334444444444444444
No 290
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.04 E-value=1.7e+02 Score=24.91 Aligned_cols=53 Identities=9% Similarity=-0.051 Sum_probs=36.1
Q ss_pred hchhcHHHHHHHHHHHhhcCCCC--cchhHHHHHH-H-----HHcCCChhHHHHHHHHHHh
Q 043758 108 FAEEKFLEAFDYFIKICNAGVDL--NCWSYNVLID-G-----LCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 108 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 160 (918)
...|++-+|-++++.+......+ ....|..+|. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44488888888888887665444 4456666666 2 2246888888888877765
No 291
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.98 E-value=4.2e+02 Score=26.26 Aligned_cols=73 Identities=14% Similarity=0.258 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGR--LSHVFSVFYSMHKRGFVPKKATYEHL 836 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (918)
...++.-|...|+.++|...++++..-.+. ...+...+..++-+.++ .+....++..+.+.|+-+.......+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 456788888899999999999888542111 12233333344433332 34566777777766655544443333
No 292
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.93 E-value=2.8e+02 Score=24.27 Aligned_cols=79 Identities=10% Similarity=-0.004 Sum_probs=33.4
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 281 (918)
+...-...+.++...++.+ +...+..+.. .++...-...+.++...++.+ +...+..+.. .++..+....+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~ 160 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 160 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444444444444432 2333333332 234444444455555554432 2333333332 234444444555
Q ss_pred HHHhcCC
Q 043758 282 NYCREGE 288 (918)
Q Consensus 282 ~~~~~g~ 288 (918)
++.+.|+
T Consensus 161 aL~~~~~ 167 (201)
T 3ltj_A 161 ALGEIGG 167 (201)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 5555544
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.62 E-value=3.6e+02 Score=25.43 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 043758 277 LIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLL 345 (918)
Q Consensus 277 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 345 (918)
.+.+...+..|+.+-+.-+++.-..-+ ..+..-++..+...+..|+. ++.+.+.+.|..++...
T Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 162 LSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-TTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred ccHHHHHHHcChHHHHHHHHHcCCCCC-cccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 344455566777776666665543322 12222223323334445553 34445556676666554
No 294
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.35 E-value=6.2e+02 Score=27.70 Aligned_cols=27 Identities=0% Similarity=-0.043 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 868 CNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 868 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
+...+..|--+|+++.|.+++.+++..
T Consensus 459 ~~dAi~LY~La~~~d~vl~lln~~Ls~ 485 (661)
T 2qx5_A 459 IYDSILLYQLAEEYDIVITLVNSLLSD 485 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334455566667777777777776543
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.15 E-value=3.9e+02 Score=25.80 Aligned_cols=246 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCC
Q 043758 312 TVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTG 391 (918)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (918)
..++.-|...|+.++|...++++......|.......-+..=.+...-+.+..++..+...-......
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i------------ 74 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDV------------ 74 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHH------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHH------------
Q ss_pred ChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHH
Q 043758 392 DLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIV 471 (918)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 471 (918)
......+++.+.+... +...|...+-.+...-+.-+......+-....+. ....+.+..
T Consensus 75 --~~gf~~ll~~ldDl~l------------------D~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~-~~~~g~~~l 133 (307)
T 2zu6_B 75 --EKSFDKLLKDLPELAL------------------DTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-DCVQARAAL 133 (307)
T ss_dssp --HHHHHHHHHHHHHHHH------------------HCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTC-CCHHHHHHH
T ss_pred --HHHHHHHHHhhhHhcc------------------cccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcc-cchHHHHHH
Q ss_pred HHhhcc-----------cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH
Q 043758 472 ELMQDT-----------EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDE 540 (918)
Q Consensus 472 ~~~~~~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 540 (918)
..+... ......|......++-+++ ..++.-|...|+.++|...++++.... -...
T Consensus 134 ~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eelkkki------------~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e 200 (307)
T 2zu6_B 134 DKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEI------------DMLLKEYLLSGDISEAEHCLKELEVPH-FHHE 200 (307)
T ss_dssp HHHHHHHHTCC----CCCSSCCCSTTSCHHHHHHHH------------HHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHH
T ss_pred HHHHHHhcccccHhHHhhhcCCCCCCCCHHHHHHHH------------HHHHHHHHcCCCHHHHHHHHHHcCCCc-chHH
Q ss_pred HHHHHHHHHHHcCCCh--HHHHHHHHHHHhCCCCCCchhHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 043758 541 VFFTTMINGYLQNRKP--IEACQLFEKMKENSVQPGSYPYTALISGLVK----KGMVDLGCMYLDRMLA 603 (918)
Q Consensus 541 ~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 603 (918)
.+...+..+.-+.++. +...+++..+.+.|+-+.......+...+.. .=++..|..++..+..
T Consensus 201 ~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~ 269 (307)
T 2zu6_B 201 LVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 269 (307)
T ss_dssp HHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHH
No 296
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.25 E-value=1.7e+02 Score=24.10 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043758 777 DQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAG 809 (918)
Q Consensus 777 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 809 (918)
-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 35 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 35 MSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444333333333333333333333
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.64 E-value=1.4e+02 Score=25.33 Aligned_cols=65 Identities=8% Similarity=0.167 Sum_probs=35.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 043758 728 YNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGE--IDQAIGLFNQMNADGCVP 793 (918)
Q Consensus 728 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p 793 (918)
.+.++.-|...|+.++|...++++...... .......+..++-+.++ .+.+..++..+...++-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345666777778888888877776421111 11233444445554322 344556666666655443
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.30 E-value=1.9e+02 Score=24.27 Aligned_cols=39 Identities=8% Similarity=-0.007 Sum_probs=17.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043758 771 IAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAG 809 (918)
Q Consensus 771 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 809 (918)
...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 37 ~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 37 YRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333344445555555544433334444344444444444
No 299
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.71 E-value=3.2e+02 Score=23.49 Aligned_cols=28 Identities=7% Similarity=-0.092 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVN 441 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 441 (918)
..++.+...+...|+.++|+..|..--.
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 5577888888899999999998876543
No 300
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.40 E-value=2.3e+02 Score=21.62 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=11.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043758 783 FNQMNADGCVPDKTVYNTLLKGLCQAG 809 (918)
Q Consensus 783 ~~~~~~~~~~p~~~~~~~l~~~~~~~g 809 (918)
.+++..-|+.|+..+..-++..|...+
T Consensus 32 ~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 32 AEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 333333344444444444444444443
No 301
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.60 E-value=1.8e+02 Score=24.44 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043758 776 IDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAG 809 (918)
Q Consensus 776 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 809 (918)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344455555544433334434333444444444
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.47 E-value=2.4e+02 Score=23.59 Aligned_cols=60 Identities=3% Similarity=0.032 Sum_probs=30.5
Q ss_pred HHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043758 193 EMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 193 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 253 (918)
.+.+.|.. ....-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 17 ~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34455554 3333444555555555566667777766665444454454444455555543
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.19 E-value=1.6e+02 Score=24.01 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=7.9
Q ss_pred HHhccCchHHHHHHHHHH
Q 043758 177 ALCKNIRTVEAESFAREM 194 (918)
Q Consensus 177 ~~~~~g~~~~a~~~~~~~ 194 (918)
=|...|+.++|.+.++++
T Consensus 16 EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 16 EYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHh
Confidence 344444444444444444
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.91 E-value=1.6e+02 Score=24.63 Aligned_cols=34 Identities=12% Similarity=-0.102 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 043758 811 LSHVFSVFYSMHKRGFVPKKATYEHLLECFCANC 844 (918)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 844 (918)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3444444444444333334444333344444444
No 305
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.54 E-value=7.5e+02 Score=27.04 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=25.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 043758 417 TIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQ 460 (918)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 460 (918)
-.+|-.|.++|.+++|.++.++....- .--...+...+..++.
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~~-~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKANI-KKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGGC------CHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhH-hhhhHHHHHHHHHHHh
Confidence 366778889999999999886654211 1111355566666653
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.47 E-value=2.4e+02 Score=24.00 Aligned_cols=53 Identities=9% Similarity=-0.067 Sum_probs=41.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHH------HhhchhcHHHHHHHHHHHhh
Q 043758 73 VALGNIEDALRHFDRLISKNIVP--IKLACVSILR------GLFAEEKFLEAFDYFIKICN 125 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 125 (918)
...|++=+|.++|+.+-.....+ ....|..+|+ .+.+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34589999999999988776555 5557777777 24667999999999998764
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.67 E-value=2.9e+02 Score=22.89 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=26.3
Q ss_pred HHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043758 194 MESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG 252 (918)
Q Consensus 194 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 252 (918)
+.+.|..++ ..-..++..+...+..-.|.++++.+.+.+...+..|-...+..+...|
T Consensus 13 l~~~g~r~T-~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRIT-PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCC-HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344444422 2233334444444445556666666655443334444444444444444
No 308
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.57 E-value=5.4e+02 Score=24.97 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 043758 826 FVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPC 899 (918)
Q Consensus 826 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 899 (918)
+..+...-+.-+.+|+-.-+.+.....+ ++...+....+.+++..|..+.+++++.+..|.
T Consensus 181 l~~~~~kR~lELAAYFT~c~LQp~H~~L-------------aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 181 LKEGNTVRMLELAAYFTKAKLSPIHRTN-------------ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp CCTTCHHHHHHHHHHGGGSCCCHHHHHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred cCcccHHHHHHHHHHhccCCCcHHHHHH-------------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 3333334444455555555544433332 234456677899999999999999999986443
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.80 E-value=4.9e+02 Score=26.83 Aligned_cols=135 Identities=14% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCchhHHhhhhhhh---HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhh
Q 043758 49 SALMKKLIKFGQSQSALLLYQNDF---VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICN 125 (918)
Q Consensus 49 ~~l~~~l~~~~~~~~a~~~~~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 125 (918)
..+...+..++....|..+|.+-. ...|++++|-++-...+.--.+ ++.+.+.+-++=...|...-.+.+|..+.+
T Consensus 345 ~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLR-t~~Ti~rFk~vp~~pgq~splL~YF~~Ll~ 423 (494)
T 1bpo_A 345 PDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILR-TPDTIRRFQSVPAQPGQTSPLLQYFGILLD 423 (494)
T ss_dssp HHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSC-SHHHHHHHTTSCCCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcccccc-CHHHHHHHhcCCCCCCCCCHHHHHHHHHhc
Q ss_pred cCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHH
Q 043758 126 AGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREM 194 (918)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 194 (918)
.| ..|..---.+++.-...|+.+-..+++.+ ..+..+...-..+ +..+..-|..+|.+.
T Consensus 424 ~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e----~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 424 QG-QLNKYESLELCRPVLQQGRKQLLEKWLKE----DKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred cC-ccchHHhhHHhHHHHhccHHHHHHHHHhc----CCccccHHhHhhh-----hhcCHHHHHHHHHHc
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.52 E-value=4e+02 Score=24.18 Aligned_cols=90 Identities=10% Similarity=0.147 Sum_probs=0.0
Q ss_pred hCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHHHHH
Q 043758 702 SNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAAGEIDQAI 780 (918)
Q Consensus 702 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~ 780 (918)
..|-....++..........--|-.-|--+=-.|+. ..+++..+|..|...|+.-... .|......+...|++.+|.
T Consensus 93 ~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 170 (223)
T 4aez_C 93 TSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKAD 170 (223)
T ss_dssp TTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHH
Q ss_pred HHHHHHHhCCCCC
Q 043758 781 GLFNQMNADGCVP 793 (918)
Q Consensus 781 ~~~~~~~~~~~~p 793 (918)
++|+.-++.+-.|
T Consensus 171 ~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 171 EVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHTCBS
T ss_pred HHHHHHHHcCCcc
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.90 E-value=2.9e+02 Score=24.77 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043758 486 LDSALDILDQMEVRGPKPSVA-------IYDAIIGHLCKEKRILEAEDMFKRMLKA 534 (918)
Q Consensus 486 ~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 534 (918)
++.|+.+|+.+.+.-..++.. +--..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 455666666665543221111 1123344566667777777777666543
No 312
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.57 E-value=1.6e+02 Score=20.44 Aligned_cols=47 Identities=4% Similarity=0.039 Sum_probs=31.1
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG 146 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 146 (918)
.++.++..++...-.++++..++++.+.| ..+..+|---.+.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 45566666666667777777777777776 556666666666665533
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=20.36 E-value=4.5e+02 Score=23.50 Aligned_cols=212 Identities=13% Similarity=-0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCChhhHH--HHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHH
Q 043758 82 LRHFDRLISKNIVPIKLACV--SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMR 159 (918)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (918)
.+.++.+.+.+..++..... +.+...+..|+.+-+..+++.-.......+....+.+..++.... .++++.+.
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~-----~~~v~~Ll 96 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH-----LSMVVQLM 96 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC-----HHHHHHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC-----HHHHHHHH
Q ss_pred hcCCCCCCcccHH--HHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHH--HHHHHHhcCCChHHHHHHHHHHHhcCCC
Q 043758 160 KKKGLVPALHPYK--SLFYALCKNIRTVEAESFAREMESQGFYVDKLMYT--SLINGYCSNRNMKMAMRLFFRMLKTGCE 235 (918)
Q Consensus 160 ~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~ 235 (918)
+ .+..++..... ..+...+..|+.+ +++.+.+.|..++..... +.+...+..+......+++.+....--.
T Consensus 97 ~-~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~ 171 (240)
T 3eu9_A 97 K-YGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171 (240)
T ss_dssp H-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTC
T ss_pred H-cCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcch
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 043758 236 PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLA 305 (918)
Q Consensus 236 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 305 (918)
.+...-.+.+...+..|+.+-+.-+++. ...+......-.+.+....+.|+.+-+.-+++.....+..
T Consensus 172 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 172 GDKYHKNTALHWAVLAGNTTVISLLLEA--GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp CCTTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred hhccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
No 314
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.22 E-value=4.3e+02 Score=22.91 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 043758 708 TVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLR 757 (918)
Q Consensus 708 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 757 (918)
.+..++..+.+.|+-.|..--.+.+....+.|.+ ....+-.++...|+.
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 3444555555555544444333444333332221 123333444455543
Done!