BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043760
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 26/150 (17%)
Query: 28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
TPLH+AA GH + K +L + + D + LH+A++ G++ +VK LL+ D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLN 147
+ D +GR PLHLAA GH++V++ L+ A D +N
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------------------------VN 95
Query: 148 AKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
AKD G T L LA + +E +K L + A
Sbjct: 96 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 26/132 (19%)
Query: 66 LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
LH+A++ G++ +VK LL+ D + D +GR PLHLAA GH++V++ L+ A D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---- 60
Query: 126 RLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA 185
+NAKD G T L LA + +E +K L + A +VNA
Sbjct: 61 --------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDK 99
Query: 186 NGFTAWDILAQS 197
NG T + A++
Sbjct: 100 NGRTPLHLAARN 111
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
+ +TPLH+AA +GH + E+L + LD S+ LH+A+++G++ IV+ LL+
Sbjct: 44 DTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
D +D D G PLHLAA GH++++E L++ D
Sbjct: 103 GADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 27/159 (16%)
Query: 35 AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G +D + ++ + E D+ + LH+A++ G++ IV+ LL+ D + D
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDF 78
Query: 95 DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
G PLHLAA RGH++++E L++ D +NA D G
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGAD------------------------VNADDTIGS 114
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
T L LA +E ++ L A +VNA G TA+DI
Sbjct: 115 TPLHLAADTGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI 152
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 31/178 (17%)
Query: 35 AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G +D + ++ + E DS K+ LH+A+ KG++ IV+ LL+ D + D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTP-LHLAAIKGHLEIVEVLLKHGAD-VNAADK 78
Query: 95 DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
G PLHLAA+ GH++++ EVLL+N D +NA D YG
Sbjct: 79 MGDTPLHLAALYGHLEIV---------------------EVLLKNGAD---VNATDTYGF 114
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR 212
T L LA +E ++ L A +VNA G TA+DI D + D E+L++
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
+TPLH+AA+ GH + + +L + D + LH+A+ G++ IV+ LL+ D
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLKNGAD 105
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ TD G PLHLAA GH++++E L++ D
Sbjct: 106 -VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
+ +TPLH+AAL GH + E+L + D+ + LH+A+ G++ IV+ LL+
Sbjct: 79 MGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 87 D 87
D
Sbjct: 138 D 138
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L + + DS + LH+A+++G++ IV+ LL+ D
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLKNGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ +D G PLHLAA RGH++++E L++ D
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS------------TEVLLENM 140
D G PLHLAA GH++++E L++ D + + V EVLL+N
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
D +NA D +G T L LA +E ++ L + A +VNA G TA+DI
Sbjct: 104 AD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA-DVNAQDKFGKTAFDI 152
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
+ L TPLH+AA GH + E+L + DS + LH+A+++G++ IV+ LL+
Sbjct: 77 DSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + E+L + D+ S+ LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D +G PLHLAA RGH++++E L++ D
Sbjct: 108 AKDD-NGITPLHLAANRGHLEIVEVLLKYGAD 138
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 20/116 (17%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGST--------------EVLL 137
DV G PLHLAA GH++++E L++ D + + GST EVLL
Sbjct: 43 ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL--GSTPLHLAAHFGHLEIVEVLL 100
Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
+N D +NAKDD G+T L LA +E ++ L A +VNA G TA+DI
Sbjct: 101 KNGAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI 152
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
+ L TPLH+AA GH + + +L + + D + LH+A+ +G++ IV+ LL+
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
D + D G+ ++ G+ D+ E L
Sbjct: 136 GAD-VNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + E+L + D + LH+A+++G++ IV+ LL+ D
Sbjct: 49 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D DG PLHLAA GH++++E L++A D
Sbjct: 107 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 16/113 (14%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELVRAKPDAA------------STRLIWVGSTEVLLENM 140
D DG PLHLAA GH++++E L++A D + R + EVLL+
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
D +NAKD G T L LA + +E ++ L + A +VNA G TA+DI
Sbjct: 104 AD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTAFDI 152
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + K +L + + D + LH+A++ G++ +VK LL+ D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
+ D +GR PLHLAA GH++V++ L+ A
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 25/114 (21%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAA 123
+ LH+A++ G++ +VK LL+ D + D +GR PLHLAA GH++V++ L+ A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-- 60
Query: 124 STRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
+NAKD G T L LA + +E +K L + A
Sbjct: 61 ----------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 29/121 (23%)
Query: 95 DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
+GR PLHLAA GH++V++ L+ A D +NAKD G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------------------------VNAKDKNGR 36
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAG 214
T L LA + +E +K L + A +VNA NG T + A++ + +LL AG
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGH----LEVVKLLLEAG 91
Query: 215 A 215
A
Sbjct: 92 A 92
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + E+L + D + LH+A+++G++ IV+ LL+ D
Sbjct: 37 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 94
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D DG PLHLAA GH++++E L++A D
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELVRAKPDAA------------STRLIWVGSTEVLLENM 140
D DG PLHLAA GH++++E L++A D + R + EVLL+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRD 200
D +NAKD G T L LA + +E ++ L + A +VNA G T +D+ D
Sbjct: 92 AD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTPFDLAI----D 143
Query: 201 IKDWDTGELLRRA 213
+ D E+L++A
Sbjct: 144 NGNEDIAEVLQKA 156
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
L TPLH+AA GH + E+L + D+ ++ LH+A+ G++ IV+ LL+
Sbjct: 46 LGHTPLHLAAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 87 DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
D + D +G PLHLAA GH++++E L++ D
Sbjct: 105 D-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 24/118 (20%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIW--VGST--------------EV 135
TD G PLHLAA GH++++E L++ D + W G+T EV
Sbjct: 43 TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA----WDNYGATPLHLAADNGHLEIVEV 98
Query: 136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
LL++ D +NAKD G T L LA D +E ++ L A +VNA G TA+DI
Sbjct: 99 LLKHGAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI 152
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 25/212 (11%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQ 83
N ETPLH+AA GH + AK +L K ++ A+ D + + LH A++ G+ +VK LL+
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLE 101
Query: 84 VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK------------PDAASTRLIWVG 131
+ T G PLH+AA GH++ + L+ + P + + V
Sbjct: 102 NNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160
Query: 132 STEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAW 191
E+LLE NA G+T L +AV ++ +K L ++ NG+T
Sbjct: 161 VAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPL 216
Query: 192 DILA-QSKRDIKDWDTGELLRRAGAISAKDLQ 222
I A Q++ ++ LL+ G+ +A+ +Q
Sbjct: 217 HIAAKQNQVEVAR----SLLQYGGSANAESVQ 244
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 22/178 (12%)
Query: 30 TPLHVAALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
TPLHVA+ +GH K +L + P ++ + + + LH+A++ G+ + K LLQ
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQN-KA 71
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAST----------RLIWVGSTEV 135
K + D + PLH AA GH ++++ L+ A P+ A+T R V +
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131
Query: 136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
LLE + K G T L +A ++ + L A NA NG T +
Sbjct: 132 LLEKEASQACMTKK---GFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLHV 185
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 37/189 (19%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA + A+ +L Q A + + LH+A+Q+G+ +V LL K
Sbjct: 214 TPLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEGHAEMVALLL----SKQ 268
Query: 90 SDTDV---DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELL 146
++ ++ G PLHL A GH+ V + L++ ++
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK------------------------HGVMV 304
Query: 147 NAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDT 206
+A G T L +A I+ +KFL A +VNA T G++ AQ D
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVNAKTKLGYSPLHQAAQQGHT----DI 359
Query: 207 GELLRRAGA 215
LL + GA
Sbjct: 360 VTLLLKNGA 368
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ--V 84
+ TPLHVA+ G+ K +L + + + S LH A+Q+G+ IV LL+
Sbjct: 310 MGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
P++ S DG PL +A G+I V + L
Sbjct: 369 SPNEVSS---DGTTPLAIAKRLGYISVTDVL 396
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
L +PLH AA GH D +L + E+ S ++ L IA + GY+ + +L+V+
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTD-VLKVVT 400
Query: 87 DKCS 90
D+ S
Sbjct: 401 DETS 404
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 99 PLHLAAMRGHIDVLEELVR--AKPDAASTRL-------IWVGSTEV---LLENMGDFELL 146
PLH+A+ GH+ +++ L++ A P+ ++ ++ G TEV LL+N
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-A 75
Query: 147 NAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ 196
AKDD T L A +K L + A N T G T I A+
Sbjct: 76 KAKDD--QTPLHCAARIGHTNMVKLLLENNA-NPNLATTAGHTPLHIAAR 122
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + E+L + D + LH+A+++G++ IV+ LL+ D
Sbjct: 37 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 94
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D DG PLHLAA GH++++E L++A D
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELVRAKPDAA------------STRLIWVGSTEVLLENM 140
D DG PLHLAA GH++++E L++A D + R + EVLL+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRD 200
D +NAKD G T L LA + +E ++ L + A +VNA G T +D+ + +
Sbjct: 92 AD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTPFDLAIREGHE 147
Query: 201 IKDWDTGELLRRA 213
D E+L++A
Sbjct: 148 ----DIAEVLQKA 156
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 26/135 (19%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
D + S+ LH+A+ G+ IV+ LL+ D + D DG PLHLAA GH++++E L++
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 119 KPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI 178
D +NA+D YG+T L LA +E ++ L A
Sbjct: 103 GAD------------------------VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA- 137
Query: 179 EVNAVTANGFTAWDI 193
+VNA G TA+DI
Sbjct: 138 DVNAQDKFGKTAFDI 152
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA +GH + + +L + D+ + LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADNGHLEIVEVLLKYGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D G PLHLAA RGH++++E L++ D
Sbjct: 107 NAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L + + DS + LH+A+ +G++ +V+ LL+ D
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D +G PLHLAA GH++++E L++ D
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 30/147 (20%)
Query: 66 LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
LH+A+ G++ IV+ LL+ D +D + G PLHLAA RGH++V+
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSL-GVTPLHLAADRGHLEVV------------- 96
Query: 126 RLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA 185
EVLL+N D +NA D G T L LA +E ++ L A +VNA
Sbjct: 97 --------EVLLKNGAD---VNANDHNGFTPLHLAANIGHLEIVEVLLKHGA-DVNAQDK 144
Query: 186 NGFTAWDILAQSKRDIKDWDTGELLRR 212
G TA+DI D + D E+L++
Sbjct: 145 FGKTAFDI----SIDNGNEDLAEILQK 167
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
+ L TPLH+AA GH + + +L + D + LH+A+ G++ IV+ LL+
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADVNAN-DHNGFTPLHLAANIGHLEIVEVLLK 134
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 28 SETPLHVAALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
+TPLH+AA GH++ K +L Q P DS + LH+A++ G+ +VK LL
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 86 PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
D + D DG+ PLHLAA GH +V++ L+ D
Sbjct: 94 ADPNA-KDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 27/159 (16%)
Query: 35 AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G++D K++L + DS + LH+A++ G+ +VK LL D + D
Sbjct: 11 AAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA-KDS 68
Query: 95 DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
DG+ PLHLAA GH +V++ L+ D NAKD G
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADP------------------------NAKDSDGK 104
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
T L LA + E +K L + A + N ++G T D+
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGA-DPNTSDSDGRTPLDL 142
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 28 SETPLHVAALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
+TPLH+AA GH++ K +L Q P DS + LH+A++ G+ +VK LL
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 86 PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
D + +D DGR PL LA G+ +V++ L +
Sbjct: 127 ADPNT-SDSDGRTPLDLAREHGNEEVVKLLEK 157
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 31/177 (17%)
Query: 35 AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G +D + IL A D + LH+A+ G++ IV+ LL+ D + D
Sbjct: 9 AARAGQDDEVR-ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDT 66
Query: 95 DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
+G PLHLAA GH++++E L++ D +NAKD G+
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGAD------------------------VNAKDATGI 102
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLR 211
T L LA +E ++ L A +VNA G TA+DI DI + D E+L+
Sbjct: 103 TPLYLAAYWGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI----SIDIGNEDLAEILQ 154
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
TPLH+AA +GH + E+L + +D+ ++ LH+A+ G++ IV+ LL+ D
Sbjct: 35 GRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D G PL+LAA GH++++E L++ D
Sbjct: 94 -VNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
V+ TPLH+AA LGH + + +L + + D+ + L++A+ G++ IV+ LL+
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLLK 122
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + E+L + +D + L +A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D++G PLHLAAM GH++++E L++ D
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST--------RLIWVGS----TEVLLENM 140
D G PLHLAA GH++++E L++ D + RL + EVLL+N
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRD 200
D +NA D G T L LA +E ++ L + A +VNA G TA+DI D
Sbjct: 104 AD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDI----SID 155
Query: 201 IKDWDTGELLRR 212
+ D E+L++
Sbjct: 156 NGNEDLAEILQK 167
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L + +D S+ LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D G PLHLAA+ GH++++E L++ D
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 24/135 (17%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGST--------------EVLL 137
TD G PLHLAA GH++++E L++ D + ++ GST EVLL
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM--GSTPLHLAALIGHLEIVEVLL 100
Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQS 197
++ D +NA D +G T L LA +E ++ L A +VNA G TA+DI
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI---- 152
Query: 198 KRDIKDWDTGELLRR 212
D + D E+L++
Sbjct: 153 SIDNGNEDLAEILQK 167
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
++ + TPLH+AAL+GH + + +L + +D+ + LH+A+ G++ IV+ LL+
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L + +D S+ LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D G PLHLAA+ GH++++E L++ D
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 24/135 (17%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGST--------------EVLL 137
TD G PLHLAA GH++++E L++ D + + GST EVLL
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI--XGSTPLHLAALIGHLEIVEVLL 100
Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQS 197
++ D +NA D +G T L LA +E ++ L A +VNA G TA+DI
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI---- 152
Query: 198 KRDIKDWDTGELLRR 212
D + D E+L++
Sbjct: 153 SIDNGNEDLAEILQK 167
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
++ TPLH+AAL+GH + + +L + +D+ + LH+A+ G++ IV+ LL+
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 17 LILERPTVNCLSET---PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG 73
LI VN + T PLH+AA+ GH + + +L + + D + LH+A+ G
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTG 91
Query: 74 YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
++ IV+ LL+ D + D+ G PLHLAA GH++++E L++ D
Sbjct: 92 HLEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 27/159 (16%)
Query: 35 AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G +D + ++ + +D+ + LH+A+ G++ IV+ LL+ D DV
Sbjct: 21 AARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADV 78
Query: 95 DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
G PLHLAAM GH++++E L++ D +NA D G
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGAD------------------------VNAFDMTGS 114
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
T L LA + +E ++ L A +VNA G TA+DI
Sbjct: 115 TPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI 152
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
TPLH AA GH++ K ++ + + A++ D R + LH A+++G+ IVK L+ D
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR--TPLHYAAKEGHKEIVKLLISKGAD- 95
Query: 89 CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
+ D DGR PLH AA GH ++++ L+ D ++
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 29/160 (18%)
Query: 35 AALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD 93
AA G++D K+++ + A + D R + LH A+++G+ IVK L+ D + D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR--TPLHYAAKEGHKEIVKLLISKGAD-VNAKD 67
Query: 94 VDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYG 153
DGR PLH AA GH ++++ L+ D +NAKD G
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGAD------------------------VNAKDSDG 103
Query: 154 MTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
T L A + E +K L + A +VN ++G T D+
Sbjct: 104 RTPLHYAAKEGHKEIVKLLISKGA-DVNTSDSDGRTPLDL 142
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
TPLH AA GH++ K ++ + + A++ D R + LH A+++G+ IVK L+ D
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR--TPLHYAAKEGHKEIVKLLISKGAD- 128
Query: 89 CSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
+ +D DGR PL LA G+ EE+V+
Sbjct: 129 VNTSDSDGRTPLDLAREHGN----EEIVK 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 26/128 (20%)
Query: 66 LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
LH+ G++ I++ LL+ D + +D G PLHLAA RGH++++E L++ D
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD---- 105
Query: 126 RLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA 185
+NA D G T L LA D +E ++ L A +VNA
Sbjct: 106 --------------------VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-DVNAQDK 144
Query: 186 NGFTAWDI 193
G TA+DI
Sbjct: 145 FGKTAFDI 152
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + E+L + +D + + LH+A++ G++ IV+ LL+ D
Sbjct: 82 TPLHLAAYRGHLEIV-EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-V 139
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVR 117
+ D G+ ++ G+ D+ E L +
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 26/135 (19%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
D+ ++ LH+A+ G++ IV+ LL+ D +DV G PLHLAA GH++++
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIV------ 96
Query: 119 KPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI 178
EVLL+N D +NA D GMT L LA +E ++ L A
Sbjct: 97 ---------------EVLLKNGAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA- 137
Query: 179 EVNAVTANGFTAWDI 193
+VNA G TA+DI
Sbjct: 138 DVNAQDKFGKTAFDI 152
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L + + D + LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D DG PLHLAA G+++++E L++ D
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH AA GH++ K +L K DS + LH A++ G+ IVK LL D
Sbjct: 39 TPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D DGR PLH AA GH ++++ L+ D
Sbjct: 98 A-KDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 31/161 (19%)
Query: 35 AALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT 92
AA G++D K++L P + DS + LH A++ G+ IVK LL D +
Sbjct: 11 AAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA-K 66
Query: 93 DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDY 152
D DGR PLH AA GH ++++ L+ D NAKD
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADP------------------------NAKDSD 102
Query: 153 GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
G T L A + E +K L + A + N ++G T D+
Sbjct: 103 GRTPLHYAAENGHKEIVKLLLSKGA-DPNTSDSDGRTPLDL 142
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH AA GH++ K +L K DS + LH A++ G+ IVK LL D
Sbjct: 72 TPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVR 117
+ +D DGR PL LA G+ EE+V+
Sbjct: 131 T-SDSDGRTPLDLAREHGN----EEIVK 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + E+L + D + LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D DG PLHLAA GH++++E L++ D
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS------------TEVLLEN 139
TD DG PLHLAA GH++++E L++ D ++ L + EVLL++
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 140 MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
D +NA D+ G T L LA +E ++ L A +VNA G TA+DI
Sbjct: 103 GAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI 152
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 29/160 (18%)
Query: 35 AALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD 93
AA G++D K+++ + A + D R + LH A++ G+ +VK L+ D + D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR--TPLHHAAENGHKEVVKLLISKGAD-VNAKD 67
Query: 94 VDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYG 153
DGR PLH AA GH +V++ L+ D +NAKD G
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGAD------------------------VNAKDSDG 103
Query: 154 MTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
T L A + E +K L + A +VN ++G T D+
Sbjct: 104 RTPLHHAAENGHKEVVKLLISKGA-DVNTSDSDGRTPLDL 142
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH AA GH++ K +L K DS + LH A++ G+ +VK L+ D
Sbjct: 39 TPLHHAAENGHKEVVK-LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-V 96
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
+ D DGR PLH AA GH +V++ L+ D ++
Sbjct: 97 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
TPLH AA GH++ K ++ + + A++ D R + LH A++ G+ +VK L+ D
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGR--TPLHHAAENGHKEVVKLLISKGAD- 128
Query: 89 CSDTDVDGRNPLHLAAMRGHIDVLE 113
+ +D DGR PL LA G+ +V++
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEVVK 153
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS------------TEVLLEN 139
TD +G PLHLAA G ++++E L++ D ++ + EVLL++
Sbjct: 35 TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 140 MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI-LAQSK 198
D +NA D G T L LA Q+E ++ L A +VNA A G TA+DI + Q +
Sbjct: 95 GAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA-DVNAQDALGLTAFDISINQGQ 150
Query: 199 RDIKD 203
D+ +
Sbjct: 151 EDLAE 155
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA G + + +L + DS + LH+A+ G++ IV+ LL+ D
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGAD-V 98
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ D G PLHLAA+ G ++++E L++ D
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 135 VLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFT 189
+L+ N D +NA DD G+T L LA A+ Q+E ++ L + A +VNA + G T
Sbjct: 24 ILMANGAD---VNATDDNGLTPLHLAAANGQLEIVEVLLKNGA-DVNASDSAGIT 74
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
+D + LH+A+++G++ IV+ LL+ D + +D+ GR PLHLAA GH++++E L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 118 AKPD 121
D
Sbjct: 102 YGAD 105
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 32/175 (18%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ- 83
N L +TPLH+A + + A+ +L E D R ++ LH+A ++G + V L Q
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 84 -VIPDKCS---DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLEN 139
P S T+ +G LHLA++ G++ ++E LV D
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------------------ 139
Query: 140 MGDFELLNAKDDY-GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
+NA++ G T L LAV + + + L A +VN VT G++ + +
Sbjct: 140 ------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-DVNRVTYQGYSPYQL 187
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 52/185 (28%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEEL----------DSRKSSALHIASQKGY 74
N L +TPLH+A ++ +P IAE L D R ++ LH+A ++G
Sbjct: 42 NNLQQTPLHLA-----------VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC 90
Query: 75 VGIVKALLQ--VIPDKCS---DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIW 129
+ V L Q P S T+ +G LHLA++ G++ ++E LV D
Sbjct: 91 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-------- 142
Query: 130 VGSTEVLLENMGDFELLNAKDDY-GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGF 188
+NA++ G T L LAV + + + L A +VN VT G+
Sbjct: 143 ----------------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-DVNRVTYQGY 185
Query: 189 TAWDI 193
+ + +
Sbjct: 186 SPYQL 190
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 25/101 (24%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDY 152
D DG PLHLAA GH++++E L++ D +NA+D++
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD------------------------VNAEDNF 79
Query: 153 GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
G+T L LA +E ++ L A +VNA G TA+DI
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI 119
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 24 VNCLSE---TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKA 80
VN L E TPLH+AA LGH + + +L + E D+ + LH+A+ +G++ IV+
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE-DNFGITPLHLAAIRGHLEIVEV 98
Query: 81 LLQ 83
LL+
Sbjct: 99 LLK 101
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
+D + LH+A+++G++ IV+ LL+ D + D+ GR PLHLAA GH++++E L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 118 AKPD 121
D
Sbjct: 102 YGAD 105
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 17 LILERPTVNCLSE---TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG 73
L+ VN + + TPLH+AA GH + + +L + D + LH+A+ G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVG 91
Query: 74 YVGIVKALLQVIPD 87
++ IV+ LL+ D
Sbjct: 92 HLEIVEVLLEYGAD 105
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 62 KSSALHIASQKGYVGIVKALLQVIP--DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK 119
K S LH A++ G+V I L+Q D CS+ D R PL AA H++ ++ L++A
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE---DQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 120 PDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIE 179
L++ KD G T L LA E +++L ++ ++
Sbjct: 68 A------------------------LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103
Query: 180 VNAVTANGFT 189
VN G+T
Sbjct: 104 VNCQDDGGWT 113
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ----VI 85
+PLH AA GH D ++ I + + + L A++ ++ VK L++ V
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 86 PDKCSDTDVDGRNPLHLAAMRGHIDVLEEL-------VRAKPDAASTRLIW------VGS 132
P D +G LHLAA +GH +V++ L V + D T +IW V
Sbjct: 72 P-----KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Query: 133 TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWD 192
++LL D +N +D+ L A ++ + L + +++AV +G +
Sbjct: 127 VKLLLSKGSD---INIRDNEENICLHWAAFSGCVDIAEILLAAKC-DLHAVNIHGDSPLH 182
Query: 193 ILAQSKR 199
I A+ R
Sbjct: 183 IAARENR 189
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 24 VNCLSE---TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKA 80
VNC + TP+ A H D K +L + I D+ ++ LH A+ G V I +
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEI 162
Query: 81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVL 112
LL D ++ G +PLH+AA D +
Sbjct: 163 LLAAKCDL-HAVNIHGDSPLHIAARENRYDCV 193
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
+D + LH+A+++G++ IV+ LL+ D + +D GR PLHLAA GH++++E L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 118 AKPD 121
D
Sbjct: 102 YGAD 105
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 25/98 (25%)
Query: 96 GRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMT 155
G PLHLAA RGH++++E L++ D +NA D +G T
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD------------------------VNASDSWGRT 82
Query: 156 ILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
L LA +E ++ L A +VNA G TA+DI
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGA-DVNAQDKFGKTAFDI 119
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 17 LILERPTVNCLSE---TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG 73
L+ VN + + TPLH+AA GH + + +L + DS + LH+A+ G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVG 91
Query: 74 YVGIVKALLQVIPD 87
++ IV+ LL+ D
Sbjct: 92 HLEIVEVLLEYGAD 105
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL--QVIPD 87
+PLHVAAL G D +L A ++ ++ LH+A Q+G+ +VK LL P+
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLN 147
K D+ G PL A GH ELV L+ G++ +N
Sbjct: 147 K---KDLSGNTPLIYACSGGH----HELV--------ALLLQHGAS------------IN 179
Query: 148 AKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKR 199
A ++ G T L AV +K + ++ L A V + TA D Q+ +
Sbjct: 180 ASNNKGNTALHEAVIEKHVFVVELLLLHGA-SVQVLNKRQRTAVDCAEQNSK 230
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELL----- 146
T DG +PLH+AA+ G D++ L++ +A + + + G F+++
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ-GHFQVVKCLLD 140
Query: 147 -----NAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
N KD G T L+ A + E + L A +NA G TA
Sbjct: 141 SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA-SINASNNKGNTA 188
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 28 SETPLHVAALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
TPLH AA GH + K++L + + A D ++ LH+A++ G+ IVK LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 87 DKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
D + DG P HLA GH ++++ L
Sbjct: 67 D-VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 66 LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
LH A++ G+ VK LL D + DG PLHLAA GH +++ +L+ AK +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIV-KLLLAKGADVNA 70
Query: 126 RLIWVGSTEVLLENMGDFELLNAKDDYGMTI 156
R + E L + G E++ D G +
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 25/95 (26%)
Query: 95 DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
DG PLH AA GH + +++L+ D +NA+ G
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD------------------------VNARSKDGN 43
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFT 189
T L LA + E +K L A +VNA + +G T
Sbjct: 44 TPLHLAAKNGHAEIVKLLLAKGA-DVNARSKDGNT 77
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
D + ++ LH+A+ ++ IV+ LL+ D + D DG PLHLAA+ GH++++E L++
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 119 KPD 121
D
Sbjct: 103 GAD 105
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 9/87 (10%)
Query: 135 VLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDIL 194
+L+ N D +NAKD+YG+T L LA A +E ++ L + A +VNAV A GFT +
Sbjct: 32 ILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-DVNAVDAIGFTPLHLA 87
Query: 195 AQSKRDIKDWDTGELLRRAGA-ISAKD 220
A I + E+L + GA ++A+D
Sbjct: 88 AF----IGHLEIAEVLLKHGADVNAQD 110
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
D + L++A+ G++ IV+ LL+ D + D G PLHLAA GH+++ E L++
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 119 KPD 121
D
Sbjct: 103 GAD 105
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 23 TVNCLSETPLHVAALLGHEDFAKEILPQKPRI 54
V+ + TPLH+AA +GH + A+ +L +
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 26 CLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV- 84
C+S + A G D KE + +A D +ALH A G+ IV+ LLQ+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL------VRAKPDAASTRLIWVGSTE---- 134
+P +D D G +PLH+AA G ++++ L V A T L + S
Sbjct: 64 VP--VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 135 --VLLENMGDFELLNAKDDYGMTILLLAVAD---KQIEAIKFLTTSTAIE 179
+LLE + + AKD Y T + A A K + + F ST I+
Sbjct: 122 AVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 17 LILERPTVNCLSE---TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG 73
L+++ VN +++ TPLH AA + A +L + D ++A+H A+ KG
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKG 150
Query: 74 YVGIVKALLQVIPDKCSDTDVDGRNPLHLAA 104
+ +V LL + D +G PLHLA
Sbjct: 151 NLKMVHILL-FYKASTNIQDTEGNTPLHLAC 180
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 26 CLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV- 84
C+S + A G D KE + +A D +ALH A G+ IV+ LLQ+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL------VRAKPDAASTRLIWVGSTE---- 134
+P +D D G +PLH+AA G ++++ L V A T L + S
Sbjct: 64 VP--VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 135 --VLLENMGDFELLNAKDDYGMTILLLAVAD---KQIEAIKFLTTSTAIE 179
+LLE + + AKD Y T + A A K + + F ST I+
Sbjct: 122 AVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 17 LILERPTVNCLSE---TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG 73
L+++ VN +++ TPLH AA + A +L + D ++A+H A+ KG
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKG 150
Query: 74 YVGIVKALLQVIPDKCSDTDVDGRNPLHLAA 104
+ +V LL + D +G PLHLA
Sbjct: 151 NLKMVHILL-FYKASTNIQDTEGNTPLHLAC 180
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 35 AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G +D + ++ + E D + LH+A+ ++ IV+ LL+ D + D
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGAD-VNAIDA 78
Query: 95 DGRNPLHLAAMRGHIDVLEELVRAKPD 121
G PLHL AM GH++++E L++ D
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGAD 105
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
TPLH+AA+ H + E+L + +D+ + LH+ + G++ IV+ LL+
Sbjct: 49 TPLHLAAMNDHLEIV-EVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 135 VLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDIL 194
+L+ N D +NA+D G+T L LA + +E ++ L + A +VNA+ A G T ++
Sbjct: 32 ILMANGAD---VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA-DVNAIDAIGETPLHLV 87
Query: 195 AQSKRDIKDWDTGELLRRAGA-ISAKD 220
A + E+L + GA ++A+D
Sbjct: 88 AMYGH----LEIVEVLLKHGADVNAQD 110
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 22/85 (25%)
Query: 63 SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA 122
+ALH+A+ KGY ++K L+Q D + D DG PLH AA G EE R
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGK----EEACR----- 249
Query: 123 ASTRLIWVGSTEVLLENMGDFELLN 147
+L+EN+ D E +N
Sbjct: 250 ------------ILVENLCDMEAVN 262
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 41 EDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNP 99
E+ + IL K +A D +ALH A G+ IV+ LLQ+ +P +D D G +P
Sbjct: 21 EELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSP 77
Query: 100 LHLAAMRGHIDVLEEL------VRAKPDAASTRLIWVGSTE------VLLENMGDFELLN 147
LH+AA G ++++ L V A T L + S +LLE + +
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--- 134
Query: 148 AKDDYGMTILLLAVADKQIEAIKFL 172
AKD Y T + A A ++ I L
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHIL 159
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH AA + A +L + D +++A+H A+ KG + ++ LL
Sbjct: 109 TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILL-YYKAST 166
Query: 90 SDTDVDGRNPLHLAA 104
+ D +G PLHLA
Sbjct: 167 NIQDTEGNTPLHLAC 181
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 41 EDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNP 99
E+ + IL K +A D +ALH A G+ IV+ LLQ+ +P +D D G +P
Sbjct: 20 EELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSP 76
Query: 100 LHLAAMRGHIDVLEEL------VRAKPDAASTRLIWVGSTE------VLLENMGDFELLN 147
LH+AA G ++++ L V A T L + S +LLE + +
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--- 133
Query: 148 AKDDYGMTILLLAVADKQIEAIKFL 172
AKD Y T + A A ++ I L
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHIL 158
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH AA + A +L + D +++A+H A+ KG + ++ LL
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILL-YYKAST 165
Query: 90 SDTDVDGRNPLHLAA 104
+ D +G PLHLA
Sbjct: 166 NIQDTEGNTPLHLAC 180
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 38 LGHEDFAKEILPQKPRIAEELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDTDVDG 96
LG+ + A+ +L + +L R +A +H A++ G++ ++ LL+ D + D +G
Sbjct: 47 LGNPEIARRLLLRGAN--PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEG 103
Query: 97 RNPLHLAAMRGHIDVLEELVR 117
PLHLAA GH+ V+E LV+
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVK 124
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 56 EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
E L ++AL A++KG+V ++K LL + + D GRN L A +
Sbjct: 162 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL---------- 211
Query: 116 VRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS 175
D + I T +LL++ D +N + + G T L+LAV K + ++ L
Sbjct: 212 ---SSDDSDVEAI----THLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261
Query: 176 TAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA 215
IE+N ++G TA +LA ++K ELL + GA
Sbjct: 262 EHIEINDTDSDGKTAL-LLAV---ELKLKKIAELLCKRGA 297
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD------A 122
A Q V +V+ LL+ + + G PLH A D++E L+R D
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 123 ASTRLIWV---GSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
+T I GS ++L + +N D YG T + A +++A+KFL A
Sbjct: 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 149
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 96 GRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMT 155
G PLHLAAM GH++++ EVLL+N D +NA + G T
Sbjct: 47 GHTPLHLAAMLGHLEIV---------------------EVLLKNGAD---VNATGNTGRT 82
Query: 156 ILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
L LA +E ++ L A +VNA G TA+DI
Sbjct: 83 PLHLAAWADHLEIVEVLLKHGA-DVNAQDKFGKTAFDI 119
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 35/94 (37%)
Query: 28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
TPLH+AA+LGH + IV+ LL+ D
Sbjct: 47 GHTPLHLAAMLGH----------------------------------LEIVEVLLKNGAD 72
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
+ T GR PLHLAA H++++E L++ D
Sbjct: 73 -VNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 23 TVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKS---SALHIASQKGYVGIVK 79
T + L +PLH+AA GH + +L R D+R + LH+A+ +G+ IV+
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLL----RAGVSRDARTKVDRTPLHMAASEGHANIVE 84
Query: 80 ALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
LL+ D + D+ LH A H +V+E L++ D
Sbjct: 85 VLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELVR------AKPDAASTRLIWVGS------TEVLLEN 139
TD G +PLHLAA GH E L+R A+ T L S EVLL++
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89
Query: 140 MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
D +NAKD MT L A E ++ L A +V+ + TA+DI
Sbjct: 90 GAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDI 139
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 27/187 (14%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
T LH AA+ D K + + + + S+ LH A+++G++ +V L++ D
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP- 102
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA------ASTRLIW-------VGSTEVL 136
S D +G + +HLAA GH ++ L+ D T L+W V T +L
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162
Query: 137 LE-----NMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAW 191
L N+GD N T L AV I L + A V+A G +A
Sbjct: 163 LTFNVSVNLGDKYHKN-------TALHWAVLAGNTTVISLLLEAGA-NVDAQNIKGESAL 214
Query: 192 DILAQSK 198
D+ Q K
Sbjct: 215 DLAKQRK 221
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
D RKS+ LH+A+ V IV+ LLQ D D G PLH A GH +V E L++
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLK 112
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
TPLHVAA H D E+L + LDS +ALH A+ G++ + LL D
Sbjct: 249 TPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 29 ETPLH--VAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
ET LH VA+L E+L +K E + + LH+A+++ + +++ +L
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME-VLHKHG 270
Query: 87 DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
K + D G+ LH AA+ GH+ L+ D
Sbjct: 271 AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 56 EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
E L ++AL A++KG+V ++K LL + + D GRN L A +
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL---------- 191
Query: 116 VRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS 175
D + I T +LL++ D +N + + G T L+LAV K + ++ L
Sbjct: 192 ---SSDDSDVEAI----THLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Query: 176 TAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA 215
IE+N ++G TA +LA ++K ELL + GA
Sbjct: 242 EHIEINDTDSDGKTAL-LLAV---ELKLKKIAELLCKRGA 277
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR-------AKPD 121
A Q V +V+ LL+ + + G PLH A D++E L+R K +
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 122 AASTRLI--WVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
A+ L+ GS ++L + +N D YG T + A +++A+KFL A
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 38 LGHEDFAKEILPQKPRIAEELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDTDVDG 96
LG+ + A+ +L + +L R A +H A++ G++ ++ LL+ D + D +G
Sbjct: 47 LGNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEG 103
Query: 97 RNPLHLAAMRGHIDVLEELVR 117
PLHLAA GH+ V+E LV+
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVK 124
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
+PLH A G + ++ + RI ++ + LH+A+ G+ IV+ LLQ D
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-I 98
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELV 116
+ + G PLH A G V E+LV
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQV-----IPDKCSDTDVDGRNPLHLAAMRGHIDVLE 113
D S LH A ++G +V+ L+ + ++ DT PLHLAA GH D+++
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT------PLHLAASHGHRDIVQ 89
Query: 114 ELVRAKPD 121
+L++ K D
Sbjct: 90 KLLQYKAD 97
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 17 LILERPTVNCLS---ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG 73
LI+ +N ++ +TPLH+AA GH D +++L K I ++ + LH A G
Sbjct: 58 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWG 116
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 38 LGHEDFAKEILPQKPRIAEELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDTDVDG 96
LG+ + A+ +L + +L R A +H A++ G++ ++ LL+ D + D +G
Sbjct: 47 LGNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEG 103
Query: 97 RNPLHLAAMRGHIDVLEELVR 117
PLHLAA GH+ V+E LV+
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVK 124
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
+PLH A G + ++ + RI ++ + LH+A+ G+ IV+ LLQ D
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-I 93
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELV 116
+ + G PLH A G V E+LV
Sbjct: 94 NAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQV-----IPDKCSDTDVDGRNPLHLAAMRGHIDVLE 113
D S LH A ++G +V+ L+ + ++ DT PLHLAA GH D+++
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT------PLHLAASHGHRDIVQ 84
Query: 114 ELVRAKPD 121
+L++ K D
Sbjct: 85 KLLQYKAD 92
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 17 LILERPTVNCLS---ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG 73
LI+ +N ++ +TPLH+AA GH D +++L K I ++ + LH A G
Sbjct: 53 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWG 111
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPL AA G + E L Q + L + SAL +A KGY IVK LL D
Sbjct: 54 TPLMWAAAHG-QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-V 111
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
++ D +G PL A H+ ++ L+ + D
Sbjct: 112 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPL AA G + E L Q + L + SAL +A KGY IVK LL D
Sbjct: 36 TPLMWAAAHG-QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-V 93
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
++ D +G PL A H+ ++ L+ + D
Sbjct: 94 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPL AA G + E L Q + L + SAL +A KGY IVK LL D
Sbjct: 38 TPLMWAAAHG-QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-V 95
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
++ D +G PL A H+ ++ L+ + D
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 38 LGHEDFAKEILPQKPRIAEELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDTDVDG 96
LG+ + A+ +L + +L R A +H A++ G++ ++ LL+ D + D +G
Sbjct: 47 LGNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEG 103
Query: 97 RNPLHLAAMRGHIDVLEELVR 117
PLHLAA GH+ V+E LV+
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVK 124
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 35 AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G + K++ + +++ R+S+ LH A+ V +V+ LLQ D D
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 75
Query: 95 DGRNPLHLAAMRGHIDVLEELVR 117
G PLH A GH +V E LV+
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVK 98
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 31 PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
PLH A GH + A E+L + + D K + LH A+ KG I K LLQ D +
Sbjct: 80 PLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-T 137
Query: 91 DTDVDGRNPLHL 102
+ DG PL L
Sbjct: 138 KKNRDGNTPLDL 149
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 14/151 (9%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST--- 125
A++ G V VK L V C D + PLH AA + V+E L++ D +
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 126 ------RLIWVGSTEV--LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
G EV LL G ++N D + T L A A + E K L A
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHG--AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 178 IEVNAVTANGFTAWDILAQSKRDIKDWDTGE 208
+ +G T D++ DI+D G+
Sbjct: 135 -DPTKKNRDGNTPLDLVKDGDTDIQDLLRGD 164
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 35 AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G + K++ + +++ R+S+ LH A+ V +V+ LLQ D D
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 73
Query: 95 DGRNPLHLAAMRGHIDVLEELVR 117
G PLH A GH +V E LV+
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVK 96
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
PLH A GH + A E+L + + D K + LH A+ KG I K LLQ D
Sbjct: 77 VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP- 134
Query: 90 SDTDVDGRNPLHL 102
+ + DG PL L
Sbjct: 135 TKKNRDGNTPLDL 147
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 14/151 (9%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST--- 125
A++ G V VK L V C D + PLH AA + V+E L++ D +
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 126 ------RLIWVGSTEV--LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
G EV LL G ++N D + T L A A + E K L A
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHG--AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 178 IEVNAVTANGFTAWDILAQSKRDIKDWDTGE 208
+ +G T D++ DI+D G+
Sbjct: 133 -DPTKKNRDGNTPLDLVKDGDTDIQDLLRGD 162
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 35 AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G + K++ + +++ R+S+ LH A+ V +V+ LLQ D D
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 77
Query: 95 DGRNPLHLAAMRGHIDVLEELVR 117
G PLH A GH +V E LV+
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVK 100
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
PLH A GH + A E+L + + D K + LH A+ KG I K LLQ D
Sbjct: 81 VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP- 138
Query: 90 SDTDVDGRNPLHL 102
+ + DG PL L
Sbjct: 139 TKKNRDGNTPLDL 151
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 14/151 (9%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST--- 125
A++ G V VK L V C D + PLH AA + V+E L++ D +
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 78
Query: 126 ------RLIWVGSTEV--LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
G EV LL G ++N D + T L A A + E K L A
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHG--AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Query: 178 IEVNAVTANGFTAWDILAQSKRDIKDWDTGE 208
+ +G T D++ DI+D G+
Sbjct: 137 -DPTKKNRDGNTPLDLVKDGDTDIQDLLRGD 166
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD---GRNPLHLAAMRGHIDVLEEL 115
+ R + LHIAS KG + V+ LLQ SD +V G PLH A GH+ V+E L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 116 VRAK 119
++ K
Sbjct: 63 LQHK 66
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 22 PTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81
P N ET LH+A++ G + + E L Q D + LH A G++ +V+ L
Sbjct: 4 PFTNHRGETLLHIASIKG-DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELV 116
LQ + T +PLH AA GH+D+++ L+
Sbjct: 63 LQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
D DG PLHLAA GH++++E L++A D
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 38 LGHEDFAKEILPQKPRIAEELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDTDVDG 96
LG+ + A+ +L + +L R A +H A++ G + ++ LL+ D + D +G
Sbjct: 47 LGNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEG 103
Query: 97 RNPLHLAAMRGHIDVLEELVR 117
PLHLAA GH+ V+E LV+
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVK 124
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
+ALH A+Q IVK L+ D DG+ P+ LAA G I+V+ L++
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ--VIPD 87
T LH AA + + K ++ +K ++ D + + +A+Q+G + +V L+Q +
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVE 340
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
TD R LA H ++++ R +P+
Sbjct: 341 AVDATDHTAR---QLAQANNHHNIVDIFDRCRPE 371
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 28/155 (18%)
Query: 27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
+S PLH A + +E+L KP + + D LH + I LL +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 87 DKCSDT--DVDGRNPLHLAAMRGHIDVLEELVRA--KPDAASTRLIWVGSTEVLLENMGD 142
+ D D G P H+A G+++V++ L KPD
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD--------------------- 99
Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
LN + G+T L LAV K E +FL + A
Sbjct: 100 ---LNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 21/148 (14%)
Query: 99 PLHLAAMRGHIDVLEELVRAKPDAASTR-------LIWVGS------TEVLLENMGDFEL 145
PLH A M ++EL+ +KP + L W S T LL M + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 146 LNAKDDYGMTILLLAVADKQIEAIKFLTTS-TAIEVNAVTANGFTAWDILAQSKRDIKDW 204
+ DD G T +A + +E +K L ++N +T G T + K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW----F 120
Query: 205 DTGELLRRAGA---ISAKDLQLPVNELA 229
+ + L GA I K Q+P++ A
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 28/155 (18%)
Query: 27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
+S PLH A + +E+L KP + + D LH + I LL +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 87 DKCSDT--DVDGRNPLHLAAMRGHIDVLEELVRA--KPDAASTRLIWVGSTEVLLENMGD 142
+ D D G P H+A G+++V++ L KPD
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD--------------------- 99
Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
LN + G+T L LAV K E +FL + A
Sbjct: 100 ---LNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 21/148 (14%)
Query: 99 PLHLAAMRGHIDVLEELVRAKPDAASTR-------LIWVGS------TEVLLENMGDFEL 145
PLH A M ++EL+ +KP + L W S T LL M + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 146 LNAKDDYGMTILLLAVADKQIEAIKFLTTS-TAIEVNAVTANGFTAWDILAQSKRDIKDW 204
+ DD G T +A + +E +K L ++N +T G T + K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW----F 120
Query: 205 DTGELLRRAGA---ISAKDLQLPVNELA 229
+ + L GA I K Q+P++ A
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 28/155 (18%)
Query: 27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
+S PLH A + +E+L KP + + D LH + I LL +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 87 DKCSDT--DVDGRNPLHLAAMRGHIDVLEELVR--AKPDAASTRLIWVGSTEVLLENMGD 142
+ D D G P H+A G+++V++ L KPD
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD--------------------- 99
Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
LN + G+T L LAV K E +FL + A
Sbjct: 100 ---LNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 21/148 (14%)
Query: 99 PLHLAAMRGHIDVLEELVRAKPDAASTR-------LIWVGS------TEVLLENMGDFEL 145
PLH A M ++EL+ +KP + L W S T LL M + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 146 LNAKDDYGMTILLLAVADKQIEAIKFLTTS-TAIEVNAVTANGFTAWDILAQSKRDIKDW 204
+ DD G T +A + +E +K L ++N +T G T + K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW----F 120
Query: 205 DTGELLRRAGA---ISAKDLQLPVNELA 229
+ + L GA I K Q+P++ A
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 32/171 (18%)
Query: 30 TPLHVAALLG-----------HEDFAKEI----LPQKPRIAEELDSRKSSALHIASQKGY 74
TPL +AA+ G +ED ++ L Q + +D ++LH+A++
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 75 VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK-------------PD 121
K LL D S D GR PLH A + V + L+R + P
Sbjct: 64 ADAAKRLLDAGADANS-QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPL 122
Query: 122 AASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
+ RL G E L+ D +NA D+ G T L A A EA+ L
Sbjct: 123 ILAARLAIEGMVEDLITADAD---INAADNSGKTALHWAAAVNNTEAVNIL 170
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 21 RPTVNCLSE---TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGI 77
R VN L + T L+ A GH+D + + Q + + +ALH A+ KGY I
Sbjct: 96 RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADI 155
Query: 78 VKALL 82
V+ LL
Sbjct: 156 VQLLL 160
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 22/96 (22%)
Query: 51 KPRIAEELDSRKSSALHI----------ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPL 100
+PR +EL + ++I + KG G++ + + ++ D NPL
Sbjct: 24 EPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPS--NYVAEQAESID----NPL 77
Query: 101 HLAAMRGHIDVLEEL------VRAKPDAASTRLIWV 130
H AA RG++ L E V A ST L W
Sbjct: 78 HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA 113
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 96 GRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMT 155
GR PLH AA G +++LE L+ D +NA D + +T
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGAD------------------------INAPDKHHIT 75
Query: 156 ILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWD 192
LL AV + + +K L + A + +G TA++
Sbjct: 76 PLLSAVYEGHVSCVKLLLSKGA-DKTVKGPDGLTAFE 111
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGF 188
L+EN ++ AKD+ G+ I+ + A AIK L T + + V NGF
Sbjct: 50 LIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF 102
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
D +G PLHLAA GH++V++ L+ A D
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 35 AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
AA G +D + ++ +A + D S+ LH+A++ G++ +VK LL+ D
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
+ALH A G+ IVK L+Q + + D DG PLH AA ++ V + LV +
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGF 188
L+EN ++ AKD+ G+ I+ + A AIK L T + + V NGF
Sbjct: 50 LIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF 102
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
D +G PLHLAA GH++V++ L+ A D
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
+ALH A G+ IVK L+Q + + D DG PLH AA ++ V + LV +
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 1 MAGSVNTLLELRQQDPLILERPTVNCLSET-PLHVAALLGHEDFAKEILPQKPRIAEELD 59
M GS LEL +Q P V S T P+H AA G D K +L + LD
Sbjct: 52 MFGSPAVALELLKQG----ASPNVQDASGTSPVHDAARTGFLDTLK-VLVEHGADVNALD 106
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDK-CSDTDVDGRNPLHLAAMRG 107
S S +H+A ++G+ +V L P+ D G PL LA RG
Sbjct: 107 STGSLPIHLAIREGHSSVVSFL---APESDLHHRDASGLTPLELARQRG 152
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKAL 81
+N +T L V + G A E+L Q P + D+ +S +H A++ G++ +K L
Sbjct: 40 LNRFGKTALQVM-MFGSPAVALELLKQGASPNVQ---DASGTSPVHDAARTGFLDTLKVL 95
Query: 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
++ D + D G P+HLA GH V+ L
Sbjct: 96 VEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 1 MAGSVNTLLELRQQDPLILERPTVNCLSET-PLHVAALLGHEDFAKEILPQKPRIAEELD 59
M GS LEL +Q P V S T P+H AA G D K +L + LD
Sbjct: 50 MFGSPAVALELLKQG----ASPNVQDASGTSPVHDAARTGFLDTLK-VLVEHGADVNALD 104
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDK-CSDTDVDGRNPLHLAAMRG 107
S S +H+A ++G+ +V L P+ D G PL LA RG
Sbjct: 105 STGSLPIHLAIREGHSSVVSFL---APESDLHHRDASGLTPLELARQRG 150
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKAL 81
+N +T L V + G A E+L Q P + D+ +S +H A++ G++ +K L
Sbjct: 38 LNRFGKTALQVM-MFGSPAVALELLKQGASPNVQ---DASGTSPVHDAARTGFLDTLKVL 93
Query: 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
++ D + D G P+HLA GH V+ L
Sbjct: 94 VEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPL + A + A E L Q + DS LH A+ G+ G+ L+ D
Sbjct: 237 TPL-IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-L 294
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAK 149
D +GR+PL +A + D++ L AK A G E L+ DF L+ +
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGD-ETYLDIFRDFSLMASD 353
Query: 150 D 150
D
Sbjct: 354 D 354
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 3 GSVNTLLE-LRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILP--QKPRIAEELD 59
G ++ L E LR+ D L+ +P TPL A+ G + + +L P I L
Sbjct: 13 GELDQLKEHLRKGDNLV-NKPDERGF--TPLIWASAFGEIETVRFLLEWGADPHI---LA 66
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK 119
+ SAL +AS GY IV LL+ D + D +G PL A H+ +E L+
Sbjct: 67 KERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 120 PD 121
D
Sbjct: 126 AD 127
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 24/82 (29%)
Query: 96 GRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMT 155
GR PLH AA G +++LE L+ D +NA D + +T
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGAD------------------------INAPDKHHIT 70
Query: 156 ILLLAVADKQIEAIKFLTTSTA 177
LL AV + + +K L + A
Sbjct: 71 PLLSAVYEGHVSCVKLLLSKGA 92
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 3 GSVNTLLE-LRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILP--QKPRIAEELD 59
G ++ L E LR+ D L+ +P TPL A+ G + + +L P I L
Sbjct: 13 GELDQLKEHLRKGDNLV-NKPDERGF--TPLIWASAFGEIETVRFLLEWGADPHI---LA 66
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK 119
+ SAL +AS GY IV LL+ D + D +G PL A H+ +E L+
Sbjct: 67 KERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 120 PD 121
D
Sbjct: 126 AD 127
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPL + A + A E L Q + DS LH A+ G+ G+ L+ D
Sbjct: 237 TPL-IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-L 294
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAK 149
D +GR+PL +A + D++ L AK A G E L+ DF L+ +
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGD-ETYLDIFRDFSLMASD 353
Query: 150 D 150
D
Sbjct: 354 D 354
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPL + A + A E L Q + DS LH A+ G+ G+ L+ D
Sbjct: 237 TPL-IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-L 294
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAK 149
D +GR+PL +A + D++ L AK A G E L+ DF L+ +
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGD-ETYLDIFRDFSLMASD 353
Query: 150 D 150
D
Sbjct: 354 D 354
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKAL 81
+N +T L V + G A E+L Q P + D+ +S +H A++ G++ +K L
Sbjct: 32 LNRFGKTALQVM-MFGSTAIALELLKQGASPNVQ---DTSGTSPVHDAARTGFLDTLKVL 87
Query: 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
++ D + D G P+HLA GH V+ L
Sbjct: 88 VEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFL 120
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 1 MAGSVNTLLELRQQDPLILERPTVNCLSET-PLHVAALLGHEDFAKEILPQKPRIAEELD 59
M GS LEL +Q P V S T P+H AA G D K ++ + D
Sbjct: 44 MFGSTAIALELLKQGA----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-D 98
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
+ +H+A Q+G+ +V L D G PL LA RG D+++ L
Sbjct: 99 GTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKAL 81
+N +T L V + G A E+L Q P + D+ +S +H A++ G++ +K L
Sbjct: 38 LNRFGKTALQVM-MFGSTAIALELLKQGASPNVQ---DTSGTSPVHDAARTGFLDTLKVL 93
Query: 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
++ D + D G P+HLA GH V+ L
Sbjct: 94 VEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFL 126
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 1 MAGSVNTLLELRQQDPLILERPTVNCLSET-PLHVAALLGHEDFAKEILPQKPRIAEELD 59
M GS LEL +Q P V S T P+H AA G D K ++ + D
Sbjct: 50 MFGSTAIALELLKQGA----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-D 104
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
+ +H+A Q+G+ +V L D G PL LA RG D+++ L
Sbjct: 105 GTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 54 IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC-SDTDVDGRNPLHLAAMRGHIDVL 112
I + + + A +A++ G++ ++ L ++ P + + + + LAA GH+ VL
Sbjct: 120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAENGHLHVL 179
Query: 113 EELVRAKPDAASTRL 127
L P A+ +
Sbjct: 180 NRLCELAPTEATAXI 194
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 151 DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAW-DILAQSKRDIKDWDTGEL 209
D+G + L D+ + + +TA+ V GF +W D +A S D D G+L
Sbjct: 123 DWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFESWRDFVANS----PDLDVGKL 178
Query: 210 LRRA------GAISAKDLQLPVNEL 228
++RA ++A D P E
Sbjct: 179 MQRAIPGITDAEVAAYDAPFPGPEF 203
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
+PLH A L GH K +L ++ + + + L A G V LLQ
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELV 116
++D+ +P+H AA RGH++ + L+
Sbjct: 153 PESDL--ASPIHEAARRGHVECVNSLI 177
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
+P+H AA+ GH+ + ++ Q + + + S LH A G++ VK LL+ +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLK-HGAQV 118
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVR-----------AKPDAASTRLIWVGSTEVLLE 138
+ D PL A + G D + L++ A P + R V L+
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIA 178
Query: 139 NMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
G+ ++ K + T L LA ++Q +K L S A
Sbjct: 179 YGGN---IDHKISHLGTPLYLACENQQRACVKKLLESGA 214
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRK----SSALHIASQKGYVGIVKALL 82
+ ET LH+AAL + + A ++ P + E + + +ALHIA V +V+ALL
Sbjct: 36 MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL 95
Query: 83 ------------QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
V + + G +PL AA G +++ L+ D
Sbjct: 96 ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD 146
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
+PLH A L GH K +L ++ + + + L A G V LLQ
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELV 116
++D+ +P+H AA RGH++ + L+
Sbjct: 97 PESDL--ASPIHEAARRGHVECVNSLI 121
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
+P+H AA+ GH+ + ++ Q + + + S LH A G++ VK LL+ +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKH-GAQV 62
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELVR-----------AKPDAASTRLIWVGSTEVLLE 138
+ D PL A + G D + L++ A P + R V L+
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIA 122
Query: 139 NMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
G+ ++ K + T L LA ++Q +K L S A
Sbjct: 123 YGGN---IDHKISHLGTPLYLACENQQRACVKKLLESGA 158
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD------AASTRLIWVG 131
VK +LQ + + D +G PL++A I++ + L+ D + + ++ G
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80
Query: 132 S---TEVLLENMGDFEL------LNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNA 182
+ TE+L + L LN + YG L+ A I+ +K L +++
Sbjct: 81 AQGRTEILA-----YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135
Query: 183 VTANGFTA 190
G+TA
Sbjct: 136 QNDFGYTA 143
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 27 LSETPLHVAALLGHEDFAKEIL--PQKPRIAEELDSRKSSALH----IASQKG-----YV 75
E PL +AA D +L P +P E DS ++ LH IA +
Sbjct: 135 FGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVI 194
Query: 76 GIVKALLQVIPDKCSDTDVD------GRNPLHLAAMRGHIDVLEELVR 117
+ LLQ+ C ++ G PL LAA G I++ +++
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 27 LSETPLHVAALLGHEDFAKEIL--PQKPRIAEELDSRKSSALH----IASQKG-----YV 75
E PL +AA D +L P +P E DS ++ LH IA +
Sbjct: 148 FGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVI 207
Query: 76 GIVKALLQVIPDKCSDTDVD------GRNPLHLAAMRGHIDVLEELVR 117
+ LLQ+ C ++ G PL LAA G I++ +++
Sbjct: 208 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,827,701
Number of Sequences: 62578
Number of extensions: 381432
Number of successful extensions: 1380
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 262
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)