Query 043762
Match_columns 443
No_of_seqs 199 out of 1662
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 4.9E-58 1.1E-62 460.1 40.2 333 66-434 82-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 1.1E-57 2.4E-62 459.5 31.2 317 58-440 110-456 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 2.1E-54 4.6E-59 431.6 33.1 339 58-433 36-397 (398)
4 cd05478 pepsin_A Pepsin A, asp 100.0 1.3E-54 2.8E-59 421.8 29.5 299 59-429 1-317 (317)
5 cd06098 phytepsin Phytepsin, a 100.0 5E-54 1.1E-58 417.4 30.8 294 59-429 1-317 (317)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 4.2E-54 9.1E-59 419.8 30.4 301 63-429 1-325 (325)
7 cd05488 Proteinase_A_fungi Fun 100.0 1.4E-53 3E-58 414.9 29.3 300 59-429 1-320 (320)
8 cd05486 Cathespin_E Cathepsin 100.0 1.5E-53 3.3E-58 414.1 28.7 294 69-429 1-316 (316)
9 cd05487 renin_like Renin stimu 100.0 1.7E-53 3.8E-58 415.3 29.1 302 61-430 1-326 (326)
10 cd05477 gastricsin Gastricsins 100.0 2.8E-53 6E-58 412.8 29.9 296 66-430 1-318 (318)
11 cd05485 Cathepsin_D_like Cathe 100.0 4.4E-53 9.5E-58 412.7 29.2 304 59-429 2-329 (329)
12 cd05472 cnd41_like Chloroplast 100.0 1.3E-52 2.8E-57 404.7 31.0 292 68-432 1-299 (299)
13 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.9E-52 6.3E-57 406.6 30.3 290 68-433 3-326 (326)
14 PTZ00147 plasmepsin-1; Provisi 100.0 8.7E-52 1.9E-56 413.8 31.9 304 57-431 128-450 (453)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.8E-51 3.9E-56 410.6 32.1 304 57-431 127-449 (450)
16 cd05473 beta_secretase_like Be 100.0 1.8E-50 4E-55 399.8 30.7 317 68-436 3-351 (364)
17 cd05489 xylanase_inhibitor_I_l 100.0 2.4E-49 5.3E-54 388.9 32.8 326 75-430 2-361 (362)
18 cd05476 pepsin_A_like_plant Ch 100.0 9.1E-50 2E-54 378.0 27.2 257 68-432 1-265 (265)
19 cd06097 Aspergillopepsin_like 100.0 9.7E-49 2.1E-53 373.7 24.6 261 69-429 1-278 (278)
20 cd05475 nucellin_like Nucellin 100.0 1.2E-47 2.6E-52 364.8 28.6 257 68-432 2-273 (273)
21 cd05474 SAP_like SAPs, pepsin- 100.0 2.7E-46 5.9E-51 360.2 24.9 274 68-430 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 2.8E-47 6E-52 370.8 13.1 296 68-430 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.4E-42 3E-47 332.2 26.2 262 69-429 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 7.4E-29 1.6E-33 216.8 13.4 154 69-234 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 2E-23 4.4E-28 182.3 14.4 158 262-429 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 4.3E-22 9.3E-27 162.4 12.1 105 71-201 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.2 6.3E-06 1.4E-10 64.8 7.2 93 68-203 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.1 0.0016 3.5E-08 53.6 6.9 96 65-203 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.5 0.013 2.9E-07 44.9 7.5 89 71-202 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.7 0.072 1.6E-06 44.0 8.3 91 66-202 14-106 (124)
31 cd05484 retropepsin_like_LTR_2 95.3 0.1 2.2E-06 40.4 7.6 26 69-96 1-26 (91)
32 cd05479 RP_DDI RP_DDI; retrope 94.9 0.11 2.4E-06 42.9 7.0 25 403-427 100-124 (124)
33 PF08284 RVP_2: Retroviral asp 94.3 0.22 4.8E-06 41.8 7.6 28 403-430 105-132 (135)
34 cd06095 RP_RTVL_H_like Retrope 93.0 0.72 1.6E-05 35.2 7.9 24 72-97 2-25 (86)
35 PF11925 DUF3443: Protein of u 91.7 1.4 3.1E-05 42.7 9.7 54 150-204 83-149 (370)
36 COG3577 Predicted aspartyl pro 91.5 0.96 2.1E-05 40.1 7.7 90 58-182 95-184 (215)
37 PF13975 gag-asp_proteas: gag- 89.2 0.77 1.7E-05 33.8 4.5 30 66-97 6-35 (72)
38 PF13650 Asp_protease_2: Aspar 84.0 1 2.3E-05 34.1 2.9 20 293-312 11-30 (90)
39 PF00077 RVP: Retroviral aspar 83.9 1.6 3.5E-05 34.1 4.1 26 70-97 7-32 (100)
40 TIGR03698 clan_AA_DTGF clan AA 81.2 7 0.00015 31.2 6.8 23 403-425 85-107 (107)
41 PF13975 gag-asp_proteas: gag- 79.5 2.5 5.4E-05 31.0 3.4 21 293-313 21-41 (72)
42 cd05484 retropepsin_like_LTR_2 79.2 2.1 4.6E-05 32.9 3.1 29 269-312 4-32 (91)
43 TIGR02281 clan_AA_DTGA clan AA 78.8 2.1 4.5E-05 35.1 3.0 34 261-312 10-43 (121)
44 cd05483 retropepsin_like_bacte 75.5 3.1 6.8E-05 31.8 3.2 20 293-312 15-34 (96)
45 cd05482 HIV_retropepsin_like R 75.1 4.1 8.8E-05 31.2 3.5 23 72-96 2-24 (87)
46 cd06095 RP_RTVL_H_like Retrope 73.1 3.4 7.4E-05 31.4 2.7 21 293-313 11-31 (86)
47 cd06094 RP_Saci_like RP_Saci_l 68.3 24 0.00053 27.1 6.3 24 288-311 6-29 (89)
48 KOG0012 DNA damage inducible p 65.6 20 0.00044 34.7 6.6 40 389-431 307-347 (380)
49 PF00077 RVP: Retroviral aspar 62.5 5.3 0.00011 31.1 1.9 18 293-310 18-35 (100)
50 PF02160 Peptidase_A3: Caulifl 61.1 16 0.00034 32.7 4.7 27 402-429 91-117 (201)
51 PF09668 Asp_protease: Asparty 58.2 9.8 0.00021 31.3 2.8 29 269-312 28-56 (124)
52 PF12384 Peptidase_A2B: Ty3 tr 56.9 15 0.00032 31.6 3.7 28 70-97 34-61 (177)
53 cd05481 retropepsin_like_LTR_1 54.0 12 0.00026 29.0 2.6 20 293-312 12-31 (93)
54 PF09668 Asp_protease: Asparty 51.6 25 0.00054 28.9 4.1 29 66-96 22-50 (124)
55 cd05481 retropepsin_like_LTR_1 37.4 29 0.00063 26.8 2.4 22 73-96 3-25 (93)
56 COG5550 Predicted aspartyl pro 33.6 26 0.00057 28.6 1.6 20 294-313 29-49 (125)
57 COG3577 Predicted aspartyl pro 32.5 51 0.0011 29.5 3.3 34 261-312 104-137 (215)
58 TIGR03698 clan_AA_DTGF clan AA 32.5 63 0.0014 25.7 3.6 26 71-96 2-32 (107)
59 cd05480 NRIP_C NRIP_C; putativ 32.2 49 0.0011 26.0 2.8 20 293-312 11-30 (103)
60 PF12384 Peptidase_A2B: Ty3 tr 26.6 42 0.00091 28.9 1.7 21 292-312 46-66 (177)
61 PF08284 RVP_2: Retroviral asp 23.7 1.1E+02 0.0025 25.4 3.8 26 69-96 22-47 (135)
62 cd00303 retropepsin_like Retro 21.9 1.2E+02 0.0026 21.2 3.4 20 293-312 11-30 (92)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=4.9e-58 Score=460.10 Aligned_cols=333 Identities=29% Similarity=0.523 Sum_probs=273.9
Q ss_pred ceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC-CCC--CCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCC
Q 043762 66 NVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT-RYS--YPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNN 142 (443)
Q Consensus 66 ~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c-~~~--~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~ 142 (443)
+..|+++|+||||||++.|+|||||+++||+|..| .|. .++.|||++|+|++.+.|+++.|..... +..|..+
T Consensus 82 ~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~----~~~c~~~ 157 (431)
T PLN03146 82 GGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSDE 157 (431)
T ss_pred CccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC----CCCCCCC
Confidence 55799999999999999999999999999999988 454 5689999999999999999999976433 3458777
Q ss_pred CCCceEEecCCCCceeeeEEEEEEEeCCc-----cccceEEeEeeccccCCCCCCCCccccccccCCCcchhhhccc---
Q 043762 143 SLCHATLSYADASSSEGNLASDQFFIGSS-----EISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGF--- 214 (443)
Q Consensus 143 ~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~-----~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~--- 214 (443)
+.|.|.+.|+||+.+.|.+++|++++++. +++++.|||++...+. + ....+||||||+...|++.|+..
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~--f-~~~~~GilGLG~~~~Sl~sql~~~~~ 234 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT--F-DEKGSGIVGLGGGPLSLISQLGSSIG 234 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC--c-cCCCceeEecCCCCccHHHHhhHhhC
Confidence 78999999999987899999999999873 5889999999876532 2 12589999999999999999764
Q ss_pred CeEEEEecCC----CCceeEEeCCCCCCCCC-CceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccCCC
Q 043762 215 PKFSYCISGA----DFSGLLLLGDADLPWLL-PLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHT 289 (443)
Q Consensus 215 ~~Fs~~L~~~----~~~G~l~fGg~d~~~~g-~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 289 (443)
++||+||.+. ...|.|+||+. .++.+ .+.|+|++.... ..+|.|.|++|+||+++++++...+. ..
T Consensus 235 ~~FSycL~~~~~~~~~~g~l~fG~~-~~~~~~~~~~tPl~~~~~------~~~y~V~L~gIsVgg~~l~~~~~~~~--~~ 305 (431)
T PLN03146 235 GKFSYCLVPLSSDSNGTSKINFGTN-AIVSGSGVVSTPLVSKDP------DTFYYLTLEAISVGSKKLPYTGSSKN--GV 305 (431)
T ss_pred CcEEEECCCCCCCCCCcceEEeCCc-cccCCCCceEcccccCCC------CCeEEEeEEEEEECCEECcCCccccc--cC
Confidence 6899999652 24799999995 44443 589999986421 26899999999999999987766553 23
Q ss_pred CCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEeCcEEEE
Q 043762 290 GAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSV 369 (443)
Q Consensus 290 ~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~g~~~~i 369 (443)
+...+||||||++++||+++|++|.+++.+++...... .. .+.+..||..... ..+|+|+|+|+|.++.|
T Consensus 306 ~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~--~~----~~~~~~C~~~~~~----~~~P~i~~~F~Ga~~~l 375 (431)
T PLN03146 306 EEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVS--DP----QGLLSLCYSSTSD----IKLPIITAHFTGADVKL 375 (431)
T ss_pred CCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCC--CC----CCCCCccccCCCC----CCCCeEEEEECCCeeec
Confidence 34579999999999999999999999998888642111 11 1135689985321 57899999999999999
Q ss_pred cCCceeEecCCcccCCCceEEEEEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcCCCCc
Q 043762 370 SGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDL 434 (443)
Q Consensus 370 ~~~~~i~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~ 434 (443)
++++|+++. ..+..|+++.... +.+|||+.|||++|+|||++++|||||+++|++
T Consensus 376 ~~~~~~~~~------~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 376 QPLNTFVKV------SEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred CcceeEEEc------CCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 999999974 3456899987643 359999999999999999999999999999986
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.1e-57 Score=459.50 Aligned_cols=317 Identities=20% Similarity=0.277 Sum_probs=257.7
Q ss_pred CCCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC---CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCC
Q 043762 58 PNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT---RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFT 134 (443)
Q Consensus 58 ~~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c---~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~ 134 (443)
..+|.++.|.+|+++|+||||||+++|+|||||+++||+|..| .|..++.|||++|+|++.+.+..
T Consensus 110 ~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~----------- 178 (482)
T PTZ00165 110 QQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD----------- 178 (482)
T ss_pred ceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC-----------
Confidence 5789999999999999999999999999999999999999888 68889999999999998843110
Q ss_pred CCCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcc-------
Q 043762 135 IPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLS------- 207 (443)
Q Consensus 135 ~~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s------- 207 (443)
....+.+.|++| ++.|.+++|+|++++.+++++.||+++.+.+ ..+....+|||||||++..+
T Consensus 179 --------~~~~~~i~YGsG-s~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~-~~f~~~~~DGILGLg~~~~s~~s~~~~ 248 (482)
T PTZ00165 179 --------ESAETYIQYGTG-ECVLALGKDTVKIGGLKVKHQSIGLAIEESL-HPFADLPFDGLVGLGFPDKDFKESKKA 248 (482)
T ss_pred --------ccceEEEEeCCC-cEEEEEEEEEEEECCEEEccEEEEEEEeccc-cccccccccceeecCCCcccccccCCC
Confidence 011378999999 6889999999999999999999999998654 23555679999999998652
Q ss_pred --hhh----h--cccCeEEEEecCCC-CceeEEeCCCCCC-C--CCCceeeeecccCCCCCCCCCeeEEEEEceEEecCe
Q 043762 208 --FVS----Q--MGFPKFSYCISGAD-FSGLLLLGDADLP-W--LLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDK 275 (443)
Q Consensus 208 --~~~----q--l~~~~Fs~~L~~~~-~~G~l~fGg~d~~-~--~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~ 275 (443)
+++ | +.+++||+||+++. .+|+|+|||+|++ + .+++.|+|+... .+|+|++++|+++++
T Consensus 249 ~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~---------~yW~i~l~~i~vgg~ 319 (482)
T PTZ00165 249 LPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST---------DYWEIEVVDILIDGK 319 (482)
T ss_pred CCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc---------ceEEEEeCeEEECCE
Confidence 222 2 34599999998643 5799999999987 4 578999999875 789999999999998
Q ss_pred ecCCCCCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCC
Q 043762 276 LLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQL 355 (443)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 355 (443)
.+... ..+..|++||||+++++|.+++++|.+++ .. ..+|... +.+
T Consensus 320 ~~~~~--------~~~~~aIiDTGTSli~lP~~~~~~i~~~i----~~---------------~~~C~~~-------~~l 365 (482)
T PTZ00165 320 SLGFC--------DRKCKAAIDTGSSLITGPSSVINPLLEKI----PL---------------EEDCSNK-------DSL 365 (482)
T ss_pred Eeeec--------CCceEEEEcCCCccEeCCHHHHHHHHHHc----CC---------------ccccccc-------ccC
Confidence 76542 23567999999999999999998876655 11 1257765 689
Q ss_pred CeEEEEEeCc-----EEEEcCCceeEecCCcccCCCceEEE-EEEcCCC--CCCCceeecccceeeeEEEEeCCCCEEEE
Q 043762 356 PAVSLVFRGA-----EMSVSGDRLLYRAPGEVRGIDSVYCF-TFGNSDL--LGVEAYVIGHHHQQNVWMEFDLERSRIGM 427 (443)
Q Consensus 356 p~i~~~f~g~-----~~~i~~~~~i~~~~~~~~~~~~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGf 427 (443)
|+|+|+|+|. +|.++|++|+.+.. .....+..|+ +++..+. ...+.||||++|||++|+|||.+++||||
T Consensus 366 P~itf~f~g~~g~~v~~~l~p~dYi~~~~--~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGf 443 (482)
T PTZ00165 366 PRISFVLEDVNGRKIKFDMDPEDYVIEEG--DSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGL 443 (482)
T ss_pred CceEEEECCCCCceEEEEEchHHeeeecc--cCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEE
Confidence 9999999864 89999999999731 0123456896 5776542 12367999999999999999999999999
Q ss_pred EcCCCCchhhhcC
Q 043762 428 AQVRCDLAGQRFG 440 (443)
Q Consensus 428 a~~~c~~~~~~~~ 440 (443)
|+++|+.+...++
T Consensus 444 A~a~~~~~~~~~~ 456 (482)
T PTZ00165 444 VPAKHDQSGPNFQ 456 (482)
T ss_pred EeeccCCCCCcEE
Confidence 9999988776654
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-54 Score=431.64 Aligned_cols=339 Identities=36% Similarity=0.596 Sum_probs=280.5
Q ss_pred CCCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCCC--CCC-CCC-CCCCCCCCcCccCCCCcccCCCCCCC
Q 043762 58 PNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTR--YSY-PNA-FDPNLSSSYKPVTCSSPTCVNRTRDF 133 (443)
Q Consensus 58 ~~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~--~~~-~~~-y~p~~Sst~~~~~c~~~~c~~~~~~~ 133 (443)
...+....+..|+++|+||||||+++|+|||||+++||+|..|. |.. +.. |+|++|+|++.+.|+++.|.....
T Consensus 36 ~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~-- 113 (398)
T KOG1339|consen 36 PESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ-- 113 (398)
T ss_pred ccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCcccccccc--
Confidence 34455556678999999999999999999999999999999983 654 444 999999999999999999998554
Q ss_pred CCCCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCC---ccccceEEeEeeccccCCCCCC-CCccccccccCCCcchh
Q 043762 134 TIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGS---SEISGLVFGCMDSVFSSSSDED-GKNTGLMGMNRGSLSFV 209 (443)
Q Consensus 134 ~~~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~---~~~~~~~fg~a~~~~~~~~~~~-~~~~GIlGLg~~~~s~~ 209 (443)
.|..++.|.|.+.|++|+.+.|++++|+|++++ ..++++.|||+..+.+. +.. ...+||||||+..+++.
T Consensus 114 ----~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~--~~~~~~~dGIlGLg~~~~S~~ 187 (398)
T KOG1339|consen 114 ----SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS--FGLFAAFDGILGLGRGSLSVP 187 (398)
T ss_pred ----CcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc--cccccccceEeecCCCCccce
Confidence 388889999999999988999999999999998 77888999999998653 222 67999999999999999
Q ss_pred hhccc-----CeEEEEecCCC----CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCC
Q 043762 210 SQMGF-----PKFSYCISGAD----FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPI 279 (443)
Q Consensus 210 ~ql~~-----~~Fs~~L~~~~----~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~ 279 (443)
.|+.. ++||+||.+.+ .+|.|+||+.|+. +.+.+.|+|+..... .+|.|.+++|+|+++. .+
T Consensus 188 ~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-------~~y~v~l~~I~vgg~~-~~ 259 (398)
T KOG1339|consen 188 SQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-------TYYQVNLDGISVGGKR-PI 259 (398)
T ss_pred eecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-------ccEEEEEeEEEECCcc-CC
Confidence 99766 45999999874 4799999999976 999999999999831 3899999999999987 66
Q ss_pred CCCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEE
Q 043762 280 PRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVS 359 (443)
Q Consensus 280 ~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~ 359 (443)
+...+. ....++|+||||++++||.++|++|.+++.+++.. .... ..+...|+...... ..+|.|.
T Consensus 260 ~~~~~~---~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~---~~~~-----~~~~~~C~~~~~~~---~~~P~i~ 325 (398)
T KOG1339|consen 260 GSSLFC---TDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV---VGTD-----GEYFVPCFSISTSG---VKLPDIT 325 (398)
T ss_pred CcceEe---cCCCCEEEECCcceeeccHHHHHHHHHHHHhheec---cccC-----CceeeecccCCCCc---ccCCcEE
Confidence 666654 23678999999999999999999999999776510 0001 12466899874211 2499999
Q ss_pred EEEe-CcEEEEcCCceeEecCCcccCCCceE-EEEEEcCCCCCCCceeecccceeeeEEEEeCC-CCEEEEEc--CCCC
Q 043762 360 LVFR-GAEMSVSGDRLLYRAPGEVRGIDSVY-CFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLE-RSRIGMAQ--VRCD 433 (443)
Q Consensus 360 ~~f~-g~~~~i~~~~~i~~~~~~~~~~~~~~-C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~-~~riGfa~--~~c~ 433 (443)
|+|+ |+.|.+++++|+++. ..+.. |+++....... +.||||+.|||+++++||.. ++|||||+ ..|.
T Consensus 326 ~~f~~g~~~~l~~~~y~~~~------~~~~~~Cl~~~~~~~~~-~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 326 FHFGGGAVFSLPPKNYLVEV------SDGGGVCLAFFNGMDSG-PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEECCCcEEEeCccceEEEE------CCCCCceeeEEecCCCC-ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9999 899999999999985 22222 99866654322 57999999999999999999 99999999 6664
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.3e-54 Score=421.84 Aligned_cols=299 Identities=20% Similarity=0.353 Sum_probs=246.0
Q ss_pred CCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC---CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCC
Q 043762 59 NKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT---RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTI 135 (443)
Q Consensus 59 ~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c---~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~ 135 (443)
.+|.|+.+..|+++|+||||+|+++|+|||||+++||+|..| .|..++.|+|++|+|++...
T Consensus 1 ~~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~--------------- 65 (317)
T cd05478 1 EPLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG--------------- 65 (317)
T ss_pred CccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC---------------
Confidence 378889999999999999999999999999999999999888 57788999999999998754
Q ss_pred CCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcc------hh
Q 043762 136 PVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLS------FV 209 (443)
Q Consensus 136 ~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s------~~ 209 (443)
|.+.+.|++| ++.|.+++|+|++++.+++++.|||++.+.+. .......+||||||++..+ ++
T Consensus 66 ---------~~~~~~yg~g-s~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~ 134 (317)
T cd05478 66 ---------QPLSIQYGTG-SMTGILGYDTVQVGGISDTNQIFGLSETEPGS-FFYYAPFDGILGLAYPSIASSGATPVF 134 (317)
T ss_pred ---------cEEEEEECCc-eEEEEEeeeEEEECCEEECCEEEEEEEecCcc-ccccccccceeeeccchhcccCCCCHH
Confidence 3589999999 48999999999999999999999999876432 2223458999999987543 44
Q ss_pred hhc------ccCeEEEEecCCC-CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCC
Q 043762 210 SQM------GFPKFSYCISGAD-FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPR 281 (443)
Q Consensus 210 ~ql------~~~~Fs~~L~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 281 (443)
+|| .+++||+||.+.+ .+|+|+|||+|++ |.|+++|+|+... .+|.|.+++++|+++.+..
T Consensus 135 ~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~---------~~w~v~l~~v~v~g~~~~~-- 203 (317)
T cd05478 135 DNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE---------TYWQITVDSVTINGQVVAC-- 203 (317)
T ss_pred HHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC---------cEEEEEeeEEEECCEEEcc--
Confidence 443 3489999998764 5799999999965 9999999999754 6899999999999998753
Q ss_pred CccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEE
Q 043762 282 SVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLV 361 (443)
Q Consensus 282 ~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~ 361 (443)
..+..++|||||+++++|++.+++|.+++..... .. .++.++|.. ..++|+|+|+
T Consensus 204 -------~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~------~~----------~~~~~~C~~--~~~~P~~~f~ 258 (317)
T cd05478 204 -------SGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN------QN----------GEMVVNCSS--ISSMPDVVFT 258 (317)
T ss_pred -------CCCCEEEECCCchhhhCCHHHHHHHHHHhCCccc------cC----------CcEEeCCcC--cccCCcEEEE
Confidence 2345799999999999999999998766622110 11 234444432 1679999999
Q ss_pred EeCcEEEEcCCceeEecCCcccCCCceEEEE-EEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEc
Q 043762 362 FRGAEMSVSGDRLLYRAPGEVRGIDSVYCFT-FGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQ 429 (443)
Q Consensus 362 f~g~~~~i~~~~~i~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 429 (443)
|+|.+++|+|++|+.+ . ...|+. |+.... .+.||||++|||++|+|||++++|||||+
T Consensus 259 f~g~~~~i~~~~y~~~-------~-~~~C~~~~~~~~~--~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 259 INGVQYPLPPSAYILQ-------D-QGSCTSGFQSMGL--GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ECCEEEEECHHHheec-------C-CCEEeEEEEeCCC--CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 9999999999999976 2 458985 766543 25699999999999999999999999996
No 5
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5e-54 Score=417.37 Aligned_cols=294 Identities=20% Similarity=0.319 Sum_probs=242.3
Q ss_pred CCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC----CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCC
Q 043762 59 NKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT----RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFT 134 (443)
Q Consensus 59 ~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c----~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~ 134 (443)
++|.|+.+..|+++|+||||+|+++|+|||||+++||+|..| .|..++.|+|++|+|++...
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~-------------- 66 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNG-------------- 66 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCC--------------
Confidence 467889999999999999999999999999999999999988 57788999999999988653
Q ss_pred CCCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcch------
Q 043762 135 IPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSF------ 208 (443)
Q Consensus 135 ~~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~------ 208 (443)
+.+.+.|++| .+.|.+++|+|++++.+++++.||+++.+.. ..+....++||||||++..+.
T Consensus 67 ----------~~~~i~Yg~G-~~~G~~~~D~v~ig~~~v~~~~f~~~~~~~~-~~~~~~~~dGilGLg~~~~s~~~~~~~ 134 (317)
T cd06098 67 ----------TSASIQYGTG-SISGFFSQDSVTVGDLVVKNQVFIEATKEPG-LTFLLAKFDGILGLGFQEISVGKAVPV 134 (317)
T ss_pred ----------CEEEEEcCCc-eEEEEEEeeEEEECCEEECCEEEEEEEecCC-ccccccccceeccccccchhhcCCCCH
Confidence 2489999999 5899999999999999999999999987643 234455789999999976553
Q ss_pred ----hhh--cccCeEEEEecCC---CCceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecC
Q 043762 209 ----VSQ--MGFPKFSYCISGA---DFSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLP 278 (443)
Q Consensus 209 ----~~q--l~~~~Fs~~L~~~---~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~ 278 (443)
++| +..++||+||.+. +..|+|+|||+|++ |.|+++|+|+... .+|.|++++++|+++.+.
T Consensus 135 ~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~---------~~w~v~l~~i~v~g~~~~ 205 (317)
T cd06098 135 WYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK---------GYWQFEMGDVLIGGKSTG 205 (317)
T ss_pred HHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC---------cEEEEEeCeEEECCEEee
Confidence 333 4458999999864 25799999999965 9999999999754 689999999999998765
Q ss_pred CCCCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeE
Q 043762 279 IPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAV 358 (443)
Q Consensus 279 ~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i 358 (443)
.. .....++|||||+++++|+++++++. +..+|+.. .++|+|
T Consensus 206 ~~--------~~~~~aivDTGTs~~~lP~~~~~~i~-----------------------~~~~C~~~-------~~~P~i 247 (317)
T cd06098 206 FC--------AGGCAAIADSGTSLLAGPTTIVTQIN-----------------------SAVDCNSL-------SSMPNV 247 (317)
T ss_pred ec--------CCCcEEEEecCCcceeCCHHHHHhhh-----------------------ccCCcccc-------ccCCcE
Confidence 32 23457999999999999998665431 12368754 679999
Q ss_pred EEEEeCcEEEEcCCceeEecCCcccCCCceEEEE-EEcCCC--CCCCceeecccceeeeEEEEeCCCCEEEEEc
Q 043762 359 SLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFT-FGNSDL--LGVEAYVIGHHHQQNVWMEFDLERSRIGMAQ 429 (443)
Q Consensus 359 ~~~f~g~~~~i~~~~~i~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 429 (443)
+|+|+|+.++|+|++|+++.. ......|++ |+..+. ...+.||||++|||++|+|||++++|||||+
T Consensus 248 ~f~f~g~~~~l~~~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 248 SFTIGGKTFELTPEQYILKVG----EGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEEECCEEEEEChHHeEEeec----CCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 999999999999999998741 123458974 765331 1235699999999999999999999999996
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.2e-54 Score=419.80 Aligned_cols=301 Identities=21% Similarity=0.361 Sum_probs=240.2
Q ss_pred CccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC-----CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCC
Q 043762 63 FHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT-----RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPV 137 (443)
Q Consensus 63 ~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c-----~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~ 137 (443)
++.+.+|+++|+||||+|+++|+|||||+++||+|..| .|..++.|+|++|+|++...
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~----------------- 63 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNG----------------- 63 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCC-----------------
Confidence 35678899999999999999999999999999998888 36678899999999997632
Q ss_pred CCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcch------hhh
Q 043762 138 SCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSF------VSQ 211 (443)
Q Consensus 138 ~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~------~~q 211 (443)
|.|.+.|++| ++.|.+++|+|++++.+++++.||+++...+. .+.....+||||||++..+. +++
T Consensus 64 -------~~~~i~Yg~G-~~~G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 64 -------TEFAIQYGSG-SLSGYLSQDTVSIGGLQVEGQLFGEAVKQPGI-TFIAAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred -------cEEEEEECCc-EEEEEEeeeEEEECCEEEcCEEEEEEeeccCC-cccceeeeEEEecCCccccccCCCCHHHH
Confidence 4699999999 68999999999999999999999999876531 23345789999999976653 223
Q ss_pred ------cccCeEEEEecCCC---CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCC
Q 043762 212 ------MGFPKFSYCISGAD---FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPR 281 (443)
Q Consensus 212 ------l~~~~Fs~~L~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 281 (443)
+..++||+||++.. .+|+|+|||+|+. |.|++.|+|+... .+|.|++++|+|+++...
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~---------~~w~v~l~~i~vg~~~~~--- 202 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK---------AYWQIHMDQVDVGSGLTL--- 202 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc---------eEEEEEeeEEEECCeeee---
Confidence 33489999998642 4799999999975 9999999998754 689999999999886432
Q ss_pred CccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEE
Q 043762 282 SVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLV 361 (443)
Q Consensus 282 ~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~ 361 (443)
......++|||||+++++|.+.+++|.+++.+ . .. ... .+..+|... ..+|+|+|+
T Consensus 203 ------~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~----~-~~-~~~-----~~~~~C~~~-------~~~P~i~f~ 258 (325)
T cd05490 203 ------CKGGCEAIVDTGTSLITGPVEEVRALQKAIGA----V-PL-IQG-----EYMIDCEKI-------PTLPVISFS 258 (325)
T ss_pred ------cCCCCEEEECCCCccccCCHHHHHHHHHHhCC----c-cc-cCC-----CEEeccccc-------ccCCCEEEE
Confidence 22345799999999999999999987766621 1 11 011 123455443 678999999
Q ss_pred EeCcEEEEcCCceeEecCCcccCCCceEEEE-EEcCCC--CCCCceeecccceeeeEEEEeCCCCEEEEEc
Q 043762 362 FRGAEMSVSGDRLLYRAPGEVRGIDSVYCFT-FGNSDL--LGVEAYVIGHHHQQNVWMEFDLERSRIGMAQ 429 (443)
Q Consensus 362 f~g~~~~i~~~~~i~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 429 (443)
|+|+.++|+|++|+++.. ......|+. |+..+. .+...||||++|||++|+|||++++|||||+
T Consensus 259 fgg~~~~l~~~~y~~~~~----~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 259 LGGKVYPLTGEDYILKVS----QRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred ECCEEEEEChHHeEEecc----CCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 999999999999998741 123457974 765321 2335799999999999999999999999996
No 7
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.4e-53 Score=414.94 Aligned_cols=300 Identities=23% Similarity=0.333 Sum_probs=244.0
Q ss_pred CCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC---CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCC
Q 043762 59 NKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT---RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTI 135 (443)
Q Consensus 59 ~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c---~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~ 135 (443)
++|.++.+..|+++|+||||+|++.|+|||||+++||+|..| .|..++.|++++|+|++..
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~---------------- 64 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKAN---------------- 64 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeC----------------
Confidence 467888899999999999999999999999999999999988 5878899999999998763
Q ss_pred CCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcchh------
Q 043762 136 PVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFV------ 209 (443)
Q Consensus 136 ~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~~------ 209 (443)
.|.+.+.|++| ++.|.+++|++++++.+++++.|||++.+.+ ..+.....+||||||++..+..
T Consensus 65 --------~~~~~~~y~~g-~~~G~~~~D~v~ig~~~~~~~~f~~a~~~~g-~~~~~~~~dGilGLg~~~~s~~~~~~~~ 134 (320)
T cd05488 65 --------GTEFKIQYGSG-SLEGFVSQDTLSIGDLTIKKQDFAEATSEPG-LAFAFGKFDGILGLAYDTISVNKIVPPF 134 (320)
T ss_pred --------CCEEEEEECCc-eEEEEEEEeEEEECCEEECCEEEEEEecCCC-cceeeeeeceEEecCCccccccCCCCHH
Confidence 35699999999 5899999999999999999999999987543 2233456899999999876532
Q ss_pred ----hh--cccCeEEEEecCC-CCceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCC
Q 043762 210 ----SQ--MGFPKFSYCISGA-DFSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPR 281 (443)
Q Consensus 210 ----~q--l~~~~Fs~~L~~~-~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 281 (443)
+| +..+.||+||.+. ...|.|+|||+|+. +.|++.|+|+... .+|.|++++|+|+++.+..+
T Consensus 135 ~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~w~v~l~~i~vg~~~~~~~- 204 (320)
T cd05488 135 YNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK---------AYWEVELEKIGLGDEELELE- 204 (320)
T ss_pred HHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC---------cEEEEEeCeEEECCEEeccC-
Confidence 22 4458999999875 36899999999965 9999999999864 68999999999999877532
Q ss_pred CccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEE
Q 043762 282 SVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLV 361 (443)
Q Consensus 282 ~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~ 361 (443)
+..++|||||+++++|+++++++.+++ .... .. ..+|.++|... ..+|+|+|+
T Consensus 205 ---------~~~~ivDSGtt~~~lp~~~~~~l~~~~----~~~~--~~----------~~~~~~~C~~~--~~~P~i~f~ 257 (320)
T cd05488 205 ---------NTGAAIDTGTSLIALPSDLAEMLNAEI----GAKK--SW----------NGQYTVDCSKV--DSLPDLTFN 257 (320)
T ss_pred ---------CCeEEEcCCcccccCCHHHHHHHHHHh----CCcc--cc----------CCcEEeecccc--ccCCCEEEE
Confidence 346999999999999999988876655 2111 01 12344455431 679999999
Q ss_pred EeCcEEEEcCCceeEecCCcccCCCceEEEE-EEcCCC--CCCCceeecccceeeeEEEEeCCCCEEEEEc
Q 043762 362 FRGAEMSVSGDRLLYRAPGEVRGIDSVYCFT-FGNSDL--LGVEAYVIGHHHQQNVWMEFDLERSRIGMAQ 429 (443)
Q Consensus 362 f~g~~~~i~~~~~i~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 429 (443)
|+|+++.|+|++|+++. ...|++ +..... ...+.||||++|||++|+|||++++|||||+
T Consensus 258 f~g~~~~i~~~~y~~~~--------~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 258 FDGYNFTLGPFDYTLEV--------SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred ECCEEEEECHHHheecC--------CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 99999999999999862 237985 554321 1124699999999999999999999999996
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.5e-53 Score=414.11 Aligned_cols=294 Identities=24% Similarity=0.354 Sum_probs=237.5
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC---CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCC
Q 043762 69 LTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT---RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLC 145 (443)
Q Consensus 69 y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c---~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c 145 (443)
|+++|+||||+|+++|+|||||+++||+|..| .|..++.|+|++|+|++... |
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~------------------------~ 56 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG------------------------E 56 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC------------------------c
Confidence 78999999999999999999999999999888 58888999999999997643 5
Q ss_pred ceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcch----------hhh--cc
Q 043762 146 HATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSF----------VSQ--MG 213 (443)
Q Consensus 146 ~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~----------~~q--l~ 213 (443)
.|.+.|++| .+.|.+++|+|++++.+++++.||++..+.+. .+.....+||||||++..+. .+| +.
T Consensus 57 ~~~i~Yg~g-~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 57 AFSIQYGTG-SLTGIIGIDQVTVEGITVQNQQFAESVSEPGS-TFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EEEEEeCCc-EEEEEeeecEEEECCEEEcCEEEEEeeccCcc-cccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 699999999 68999999999999999999999998775432 23345789999999976652 233 34
Q ss_pred cCeEEEEecCCC---CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccCCC
Q 043762 214 FPKFSYCISGAD---FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHT 289 (443)
Q Consensus 214 ~~~Fs~~L~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 289 (443)
.++||+||++.. ..|+|+|||+|++ |.|++.|+|+... .+|.|++++|+|+++.+.. .
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~---------~~w~v~l~~i~v~g~~~~~---------~ 196 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ---------GYWQIQLDNIQVGGTVIFC---------S 196 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc---------eEEEEEeeEEEEecceEec---------C
Confidence 589999998642 5799999999965 9999999999764 7899999999999987642 2
Q ss_pred CCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEeCcEEEE
Q 043762 290 GAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSV 369 (443)
Q Consensus 290 ~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~g~~~~i 369 (443)
.+..++|||||+++++|.+.+++|.+.+... ..+ .+|.++|.. .+.+|+|+|+|+|..++|
T Consensus 197 ~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~-------~~~----------~~~~~~C~~--~~~~p~i~f~f~g~~~~l 257 (316)
T cd05486 197 DGCQAIVDTGTSLITGPSGDIKQLQNYIGAT-------ATD----------GEYGVDCST--LSLMPSVTFTINGIPYSL 257 (316)
T ss_pred CCCEEEECCCcchhhcCHHHHHHHHHHhCCc-------ccC----------CcEEEeccc--cccCCCEEEEECCEEEEe
Confidence 3457999999999999999998876554211 011 134444432 267999999999999999
Q ss_pred cCCceeEecCCcccCCCceEEE-EEEcCCC--CCCCceeecccceeeeEEEEeCCCCEEEEEc
Q 043762 370 SGDRLLYRAPGEVRGIDSVYCF-TFGNSDL--LGVEAYVIGHHHQQNVWMEFDLERSRIGMAQ 429 (443)
Q Consensus 370 ~~~~~i~~~~~~~~~~~~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 429 (443)
+|++|++.. ....+..|+ +|+.... ...+.||||++|||++|+|||.+++|||||+
T Consensus 258 ~~~~y~~~~----~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 258 SPQAYTLED----QSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CHHHeEEec----ccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 999999873 112345897 4765431 1235799999999999999999999999996
No 9
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.7e-53 Score=415.32 Aligned_cols=302 Identities=24% Similarity=0.349 Sum_probs=242.9
Q ss_pred CCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC-----CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCC
Q 043762 61 LPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT-----RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTI 135 (443)
Q Consensus 61 l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c-----~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~ 135 (443)
|.++.+..|+++|+||||+|+++|+|||||+++||+|..| .|..++.|+|++|+|++...
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC---------------
Confidence 4567788999999999999999999999999999997766 47778999999999998643
Q ss_pred CCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcc--------
Q 043762 136 PVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLS-------- 207 (443)
Q Consensus 136 ~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s-------- 207 (443)
|.|.+.|++| ++.|.+++|+|++++..+ ++.||++..... ..+.....+||||||++..+
T Consensus 66 ---------~~~~~~Yg~g-~~~G~~~~D~v~~g~~~~-~~~fg~~~~~~~-~~~~~~~~dGilGLg~~~~s~~~~~~~~ 133 (326)
T cd05487 66 ---------TEFTIHYASG-TVKGFLSQDIVTVGGIPV-TQMFGEVTALPA-IPFMLAKFDGVLGMGYPKQAIGGVTPVF 133 (326)
T ss_pred ---------EEEEEEeCCc-eEEEEEeeeEEEECCEEe-eEEEEEEEeccC-CccceeecceEEecCChhhcccCCCCHH
Confidence 5699999999 599999999999999877 478999987532 12344578999999997654
Q ss_pred --hhhh--cccCeEEEEecCCC---CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCC
Q 043762 208 --FVSQ--MGFPKFSYCISGAD---FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPI 279 (443)
Q Consensus 208 --~~~q--l~~~~Fs~~L~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~ 279 (443)
+++| +..++||+||.+.+ ..|+|+|||+|++ |.|+++|+|+... .+|+|++++++|+++.+..
T Consensus 134 ~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~---------~~w~v~l~~i~vg~~~~~~ 204 (326)
T cd05487 134 DNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT---------GFWQIQMKGVSVGSSTLLC 204 (326)
T ss_pred HHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC---------ceEEEEecEEEECCEEEec
Confidence 4445 55689999998743 5799999999975 9999999998754 6899999999999987642
Q ss_pred CCCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEE
Q 043762 280 PRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVS 359 (443)
Q Consensus 280 ~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~ 359 (443)
..+..++|||||+++++|.+.++++++++... . . . .+|..+|.. ...+|+|+
T Consensus 205 ---------~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~----~-~--~----------~~y~~~C~~--~~~~P~i~ 256 (326)
T cd05487 205 ---------EDGCTAVVDTGASFISGPTSSISKLMEALGAK----E-R--L----------GDYVVKCNE--VPTLPDIS 256 (326)
T ss_pred ---------CCCCEEEECCCccchhCcHHHHHHHHHHhCCc----c-c--C----------CCEEEeccc--cCCCCCEE
Confidence 23457999999999999999999987766221 1 1 1 123444432 26789999
Q ss_pred EEEeCcEEEEcCCceeEecCCcccCCCceEEE-EEEcCCC--CCCCceeecccceeeeEEEEeCCCCEEEEEcC
Q 043762 360 LVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCF-TFGNSDL--LGVEAYVIGHHHQQNVWMEFDLERSRIGMAQV 430 (443)
Q Consensus 360 ~~f~g~~~~i~~~~~i~~~~~~~~~~~~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 430 (443)
|+|+|.+++|++++|+++.. ...+..|+ +|+..+. ...+.||||++|||++|+|||++++|||||++
T Consensus 257 f~fgg~~~~v~~~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 257 FHLGGKEYTLSSSDYVLQDS----DFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEECCEEEEeCHHHhEEecc----CCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 99999999999999999741 12356897 5765432 12247999999999999999999999999986
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.8e-53 Score=412.79 Aligned_cols=296 Identities=21% Similarity=0.361 Sum_probs=241.2
Q ss_pred ceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC---CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCC
Q 043762 66 NVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT---RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNN 142 (443)
Q Consensus 66 ~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c---~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~ 142 (443)
|..|+++|.||||+|++.|+|||||+++||+|..| .|..++.|||++|+|++...
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~---------------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG---------------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC----------------------
Confidence 45799999999999999999999999999999888 57788999999999997643
Q ss_pred CCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCc------chhhhc----
Q 043762 143 SLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSL------SFVSQM---- 212 (443)
Q Consensus 143 ~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~ql---- 212 (443)
|.|.+.|++| ++.|.+++|++++++.+++++.|||++...+. .+.....+||||||++.. ++++||
T Consensus 59 --~~~~~~Yg~G-s~~G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~-~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g 134 (318)
T cd05477 59 --ETFSLQYGSG-SLTGIFGYDTVTVQGIIITNQEFGLSETEPGT-NFVYAQFDGILGLAYPSISAGGATTVMQGMMQQN 134 (318)
T ss_pred --cEEEEEECCc-EEEEEEEeeEEEECCEEEcCEEEEEEEecccc-cccccceeeEeecCcccccccCCCCHHHHHHhcC
Confidence 5699999999 58999999999999999999999999975432 233346899999998643 345543
Q ss_pred --ccCeEEEEecCCC--CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccC
Q 043762 213 --GFPKFSYCISGAD--FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPD 287 (443)
Q Consensus 213 --~~~~Fs~~L~~~~--~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 287 (443)
..++||+||++.+ ..|.|+|||+|+. +.|++.|+|+... .+|.|++++++|+++++.+
T Consensus 135 ~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~---------~~w~v~l~~i~v~g~~~~~-------- 197 (318)
T cd05477 135 LLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE---------TYWQIGIQGFQINGQATGW-------- 197 (318)
T ss_pred CcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc---------eEEEEEeeEEEECCEEecc--------
Confidence 4489999998753 5799999999965 9999999999764 7899999999999988643
Q ss_pred CCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEeCcEE
Q 043762 288 HTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEM 367 (443)
Q Consensus 288 ~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~g~~~ 367 (443)
+..+..++|||||+++++|.+++++|++++..+.. . ..+|..+|.. ...+|+|+|+|+|.++
T Consensus 198 ~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~-------~---------~~~~~~~C~~--~~~~p~l~~~f~g~~~ 259 (318)
T cd05477 198 CSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD-------Q---------YGQYVVNCNN--IQNLPTLTFTINGVSF 259 (318)
T ss_pred cCCCceeeECCCCccEECCHHHHHHHHHHhCCccc-------c---------CCCEEEeCCc--cccCCcEEEEECCEEE
Confidence 22345799999999999999999998777632211 1 1245555543 2678999999999999
Q ss_pred EEcCCceeEecCCcccCCCceEEE-EEEcCC---CCCCCceeecccceeeeEEEEeCCCCEEEEEcC
Q 043762 368 SVSGDRLLYRAPGEVRGIDSVYCF-TFGNSD---LLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQV 430 (443)
Q Consensus 368 ~i~~~~~i~~~~~~~~~~~~~~C~-~i~~~~---~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 430 (443)
.|++++|+.+. ...|+ +|+... ..+...||||++|||++|+|||++++|||||++
T Consensus 260 ~v~~~~y~~~~--------~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 260 PLPPSAYILQN--------NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EECHHHeEecC--------CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 99999999862 34796 676532 123346999999999999999999999999985
No 11
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.4e-53 Score=412.65 Aligned_cols=304 Identities=24% Similarity=0.383 Sum_probs=246.0
Q ss_pred CCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC-----CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCC
Q 043762 59 NKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT-----RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDF 133 (443)
Q Consensus 59 ~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c-----~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~ 133 (443)
.+|.|+.+..|+++|+||||+|+++|+|||||+++||+|..| .|..++.|+|++|+|++...
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~------------- 68 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNG------------- 68 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECC-------------
Confidence 478899999999999999999999999999999999999988 36668899999999987643
Q ss_pred CCCCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcch-----
Q 043762 134 TIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSF----- 208 (443)
Q Consensus 134 ~~~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~----- 208 (443)
|.|.+.|++| ++.|.+++|++++++.+++++.||++..+.+ ..+.....+||||||++..+.
T Consensus 69 -----------~~~~i~Y~~g-~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~-~~~~~~~~~GilGLg~~~~s~~~~~p 135 (329)
T cd05485 69 -----------TEFAIQYGSG-SLSGFLSTDTVSVGGVSVKGQTFAEAINEPG-LTFVAAKFDGILGMGYSSISVDGVVP 135 (329)
T ss_pred -----------eEEEEEECCc-eEEEEEecCcEEECCEEECCEEEEEEEecCC-ccccccccceEEEcCCccccccCCCC
Confidence 5699999999 5899999999999999999999999987543 223445789999999987653
Q ss_pred -----hhh--cccCeEEEEecCCC---CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeec
Q 043762 209 -----VSQ--MGFPKFSYCISGAD---FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLL 277 (443)
Q Consensus 209 -----~~q--l~~~~Fs~~L~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~ 277 (443)
.+| +..++||+||.+.. ..|+|+|||+|++ +.|+++|+|+... .+|.|.+++++++++.+
T Consensus 136 ~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~~~~i~v~~~~~ 206 (329)
T cd05485 136 VFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK---------GYWQFKMDSVSVGEGEF 206 (329)
T ss_pred HHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc---------eEEEEEeeEEEECCeee
Confidence 233 33489999998642 4799999999975 9999999999754 78999999999999875
Q ss_pred CCCCCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCe
Q 043762 278 PIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPA 357 (443)
Q Consensus 278 ~~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~ 357 (443)
. ..+..++|||||+++++|+++++++.+++.. . .. .. .||.++|... .++|+
T Consensus 207 ~----------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~----~-~~-~~----------~~~~~~C~~~--~~~p~ 258 (329)
T cd05485 207 C----------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGA----K-PI-IG----------GEYMVNCSAI--PSLPD 258 (329)
T ss_pred c----------CCCcEEEEccCCcceeCCHHHHHHHHHHhCC----c-cc-cC----------CcEEEecccc--ccCCc
Confidence 3 2345699999999999999999887666521 1 11 11 2455555432 57899
Q ss_pred EEEEEeCcEEEEcCCceeEecCCcccCCCceEEEE-EEcCC--CCCCCceeecccceeeeEEEEeCCCCEEEEEc
Q 043762 358 VSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFT-FGNSD--LLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQ 429 (443)
Q Consensus 358 i~~~f~g~~~~i~~~~~i~~~~~~~~~~~~~~C~~-i~~~~--~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 429 (443)
|+|+|+|+++.|+|++|+.+.. ..+...|+. ++... ....+.||||++|||++|+|||++++|||||+
T Consensus 259 i~f~fgg~~~~i~~~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 259 ITFVLGGKSFSLTGKDYVLKVT----QMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEEEECCEEeEEChHHeEEEec----CCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 9999999999999999999852 123458974 76532 11235699999999999999999999999985
No 12
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.3e-52 Score=404.70 Aligned_cols=292 Identities=35% Similarity=0.600 Sum_probs=238.9
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCCce
Q 043762 68 SLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHA 147 (443)
Q Consensus 68 ~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c~~ 147 (443)
+|+++|.||||||++.|+|||||+++||+|..| |.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c--------------------------------------------~~~ 36 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------------------------CLY 36 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC--------------------------------------------Cee
Confidence 489999999999999999999999999998754 238
Q ss_pred EEecCCCCceeeeEEEEEEEeCCc-cccceEEeEeeccccCCCCCCCCccccccccCCCcchhhhccc---CeEEEEecC
Q 043762 148 TLSYADASSSEGNLASDQFFIGSS-EISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGF---PKFSYCISG 223 (443)
Q Consensus 148 ~i~Y~~g~~~~G~~~~D~v~i~~~-~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~---~~Fs~~L~~ 223 (443)
.+.|++|+.+.|.+++|+|+|++. .++++.|||+....+. ....+||||||+...+++.|+.. ++||+||++
T Consensus 37 ~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~----~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~ 112 (299)
T cd05472 37 QVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGL----FGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPD 112 (299)
T ss_pred eeEeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCc----cCCCCEEEECCCCcchHHHHhhHhhcCceEEEccC
Confidence 999999977899999999999998 8999999999876532 22789999999999999988754 799999986
Q ss_pred C--CCceeEEeCCCCCCCCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccCCCCCCcEEEcccCc
Q 043762 224 A--DFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQ 301 (443)
Q Consensus 224 ~--~~~G~l~fGg~d~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ailDTGt~ 301 (443)
. ...|+|+||++|++ .|++.|+|+...... ..+|.|+|++|+|+++.+.+++.. .....++|||||+
T Consensus 113 ~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~-----~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSGTt 181 (299)
T cd05472 113 RSSSSSGYLSFGAAASV-PAGASFTPMLSNPRV-----PTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTV 181 (299)
T ss_pred CCCCCCceEEeCCcccc-CCCceECCCccCCCC-----CCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCCCc
Confidence 4 36899999999988 999999999875311 258999999999999988654321 2345799999999
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEe-CcEEEEcCCceeEecCC
Q 043762 302 FTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFR-GAEMSVSGDRLLYRAPG 380 (443)
Q Consensus 302 ~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~-g~~~~i~~~~~i~~~~~ 380 (443)
++++|+++|++|.+++.+++..... .... ..+..|+..++.. ...+|+|+|+|+ |.++.|+|++|++..
T Consensus 182 ~~~lp~~~~~~l~~~l~~~~~~~~~---~~~~---~~~~~C~~~~~~~--~~~~P~i~f~f~~g~~~~l~~~~y~~~~-- 251 (299)
T cd05472 182 ITRLPPSAYAALRDAFRAAMAAYPR---APGF---SILDTCYDLSGFR--SVSVPTVSLHFQGGADVELDASGVLYPV-- 251 (299)
T ss_pred ceecCHHHHHHHHHHHHHHhccCCC---CCCC---CCCCccCcCCCCc--CCccCCEEEEECCCCEEEeCcccEEEEe--
Confidence 9999999999999998776543211 1110 0133598876643 268999999998 899999999999842
Q ss_pred cccCCCceEEEEEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcCCC
Q 043762 381 EVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRC 432 (443)
Q Consensus 381 ~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c 432 (443)
...+..|+++..... ..+.+|||+.|||++|+|||++++|||||+++|
T Consensus 252 ---~~~~~~C~~~~~~~~-~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 252 ---DDSSQVCLAFAGTSD-DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred ---cCCCCEEEEEeCCCC-CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 134568998776542 235699999999999999999999999999999
No 13
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.9e-52 Score=406.56 Aligned_cols=290 Identities=24% Similarity=0.376 Sum_probs=236.0
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC-CCC--CCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCC
Q 043762 68 SLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT-RYS--YPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSL 144 (443)
Q Consensus 68 ~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c-~~~--~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~ 144 (443)
.|+++|+||||+|+++|+|||||+++||+|..| .|. .++.|+|++|+|++.+.|++..|.. ...| .++.
T Consensus 3 ~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-------~~~~-~~~~ 74 (326)
T cd06096 3 YYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-------CLSC-LNNK 74 (326)
T ss_pred eEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc-------cCcC-CCCc
Confidence 699999999999999999999999999999888 443 4579999999999999999999953 1234 4467
Q ss_pred CceEEecCCCCceeeeEEEEEEEeCCcccc-------ceEEeEeeccccCCCCCCCCccccccccCCCcc--------hh
Q 043762 145 CHATLSYADASSSEGNLASDQFFIGSSEIS-------GLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLS--------FV 209 (443)
Q Consensus 145 c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~-------~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s--------~~ 209 (443)
|.|.+.|++|+.+.|.+++|+|+|++..++ ++.|||+..+.+ .+.....+||||||+...+ +.
T Consensus 75 ~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~--~~~~~~~~GilGLg~~~~~~~~~~~~~l~ 152 (326)
T cd06096 75 CEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN--LFLTQQATGILGLSLTKNNGLPTPIILLF 152 (326)
T ss_pred CcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC--cccccccceEEEccCCcccccCchhHHHH
Confidence 999999999977999999999999987653 468999987653 2444578999999997643 12
Q ss_pred hh--cc--cCeEEEEecCCCCceeEEeCCCCCC-CC----------CCceeeeecccCCCCCCCCCeeEEEEEceEEecC
Q 043762 210 SQ--MG--FPKFSYCISGADFSGLLLLGDADLP-WL----------LPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLD 274 (443)
Q Consensus 210 ~q--l~--~~~Fs~~L~~~~~~G~l~fGg~d~~-~~----------g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~ 274 (443)
+| +. .++||+||++ ..|.|+||++|+. +. +++.|+|+... .+|.|++++|++++
T Consensus 153 ~~~~~~~~~~~FS~~l~~--~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~---------~~y~v~l~~i~vg~ 221 (326)
T cd06096 153 TKRPKLKKDKIFSICLSE--DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK---------YYYYVKLEGLSVYG 221 (326)
T ss_pred HhcccccCCceEEEEEcC--CCeEEEECccChhhhcccccccccccCCceEEeccCC---------ceEEEEEEEEEEcc
Confidence 23 22 2899999986 3799999999975 66 78999999865 68999999999998
Q ss_pred eecCCCCCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCC
Q 043762 275 KLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQ 354 (443)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 354 (443)
+..... ......++|||||++++||.+++++|.+++
T Consensus 222 ~~~~~~-------~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------------- 257 (326)
T cd06096 222 TTSNSG-------NTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------------- 257 (326)
T ss_pred ccccee-------cccCCCEEEeCCCCcccCCHHHHHHHHhhc-------------------------------------
Confidence 861100 234567999999999999999988754333
Q ss_pred CCeEEEEEe-CcEEEEcCCceeEecCCcccCCCceEEEEEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcCCCC
Q 043762 355 LPAVSLVFR-GAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCD 433 (443)
Q Consensus 355 ~p~i~~~f~-g~~~~i~~~~~i~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~ 433 (443)
|+|+|.|+ |.++.++|++|+++. ....+|+++.... ..+|||++|||++|+|||++++|||||+++|.
T Consensus 258 -P~i~~~f~~g~~~~i~p~~y~~~~------~~~~c~~~~~~~~----~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 258 -PTITIIFENNLKIDWKPSSYLYKK------ESFWCKGGEKSVS----NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred -CcEEEEEcCCcEEEECHHHhcccc------CCceEEEEEecCC----CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 68999998 899999999999874 2233455554432 46999999999999999999999999999994
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=8.7e-52 Score=413.76 Aligned_cols=304 Identities=19% Similarity=0.288 Sum_probs=241.4
Q ss_pred CCCCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC---CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCC
Q 043762 57 SPNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT---RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDF 133 (443)
Q Consensus 57 ~~~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c---~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~ 133 (443)
..++|.++.+.+|+++|+||||+|+++|+|||||+++||+|..| .|..++.|||++|+|++...
T Consensus 128 ~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~------------- 194 (453)
T PTZ00147 128 DNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG------------- 194 (453)
T ss_pred CeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC-------------
Confidence 46789999999999999999999999999999999999999888 68889999999999997754
Q ss_pred CCCCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccC-CCCCCCCccccccccCCCcch----
Q 043762 134 TIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSS-SSDEDGKNTGLMGMNRGSLSF---- 208 (443)
Q Consensus 134 ~~~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~-~~~~~~~~~GIlGLg~~~~s~---- 208 (443)
|.|.+.|++| ++.|.+++|+|++|+.+++ ..|+++....+. ........|||||||++..+.
T Consensus 195 -----------~~f~i~Yg~G-svsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~ 261 (453)
T PTZ00147 195 -----------TKVEMNYVSG-TVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVD 261 (453)
T ss_pred -----------CEEEEEeCCC-CEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCC
Confidence 4599999999 6999999999999999887 578888765321 112344789999999987642
Q ss_pred --h----hh--cccCeEEEEecCCC-CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecC
Q 043762 209 --V----SQ--MGFPKFSYCISGAD-FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLP 278 (443)
Q Consensus 209 --~----~q--l~~~~Fs~~L~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~ 278 (443)
+ .| +..++||+||++.+ ..|.|+|||+|++ |.|++.|+|+... .+|.|.++ +.+++...
T Consensus 262 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~---------~~W~V~l~-~~vg~~~~- 330 (453)
T PTZ00147 262 PYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD---------LYWQVDLD-VHFGNVSS- 330 (453)
T ss_pred CHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC---------ceEEEEEE-EEECCEec-
Confidence 2 23 44589999998643 6799999999975 9999999999643 68999998 46766432
Q ss_pred CCCCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeE
Q 043762 279 IPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAV 358 (443)
Q Consensus 279 ~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i 358 (443)
....++|||||+++++|++.++++.+++.. . .....+. +..+|+. ..+|+|
T Consensus 331 -----------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~----~-~~~~~~~-----y~~~C~~--------~~lP~~ 381 (453)
T PTZ00147 331 -----------EKANVIVDSGTSVITVPTEFLNKFVESLDV----F-KVPFLPL-----YVTTCNN--------TKLPTL 381 (453)
T ss_pred -----------CceeEEECCCCchhcCCHHHHHHHHHHhCC----e-ecCCCCe-----EEEeCCC--------CCCCeE
Confidence 235799999999999999999887666521 1 1111111 2334542 568999
Q ss_pred EEEEeCcEEEEcCCceeEecCCcccCCCceEEE-EEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcCC
Q 043762 359 SLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCF-TFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVR 431 (443)
Q Consensus 359 ~~~f~g~~~~i~~~~~i~~~~~~~~~~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 431 (443)
+|.|+|..++|+|++|+.+. .......|+ +++..+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 382 ~f~f~g~~~~L~p~~yi~~~----~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 382 EFRSPNKVYTLEPEYYLQPI----EDIGSALCMLNIIPIDL-EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEECCEEEEECHHHheecc----ccCCCcEEEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 99999999999999999763 112345797 4776543 22569999999999999999999999999987
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.8e-51 Score=410.59 Aligned_cols=304 Identities=17% Similarity=0.293 Sum_probs=239.4
Q ss_pred CCCCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC---CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCC
Q 043762 57 SPNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT---RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDF 133 (443)
Q Consensus 57 ~~~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c---~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~ 133 (443)
..++|.++.+.+|+++|+||||+|+++|+|||||+++||+|..| .|..++.|+|++|+|++..+
T Consensus 127 ~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~------------- 193 (450)
T PTZ00013 127 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG------------- 193 (450)
T ss_pred CceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC-------------
Confidence 46788899999999999999999999999999999999999988 58889999999999997754
Q ss_pred CCCCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccC-CCCCCCCccccccccCCCcc-----
Q 043762 134 TIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSS-SSDEDGKNTGLMGMNRGSLS----- 207 (443)
Q Consensus 134 ~~~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~-~~~~~~~~~GIlGLg~~~~s----- 207 (443)
|.+.+.|++| ++.|.++.|+|++|+.+++ ..|+++...... ..+....++||||||++..+
T Consensus 194 -----------~~~~i~YG~G-sv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 194 -----------TKVDITYGSG-TVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred -----------cEEEEEECCc-eEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 4699999999 5999999999999999887 578887764321 11234478999999998664
Q ss_pred -hhhh------cccCeEEEEecCCC-CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecC
Q 043762 208 -FVSQ------MGFPKFSYCISGAD-FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLP 278 (443)
Q Consensus 208 -~~~q------l~~~~Fs~~L~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~ 278 (443)
++.| +..++||+||++.+ ..|.|+|||+|++ |.|++.|+|+... .+|.|+++ +.++....
T Consensus 261 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~---------~yW~I~l~-v~~G~~~~- 329 (450)
T PTZ00013 261 PIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD---------LYWQIDLD-VHFGKQTM- 329 (450)
T ss_pred CHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC---------ceEEEEEE-EEECceec-
Confidence 2333 34589999998653 6899999999976 9999999999654 68999998 66664432
Q ss_pred CCCCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeE
Q 043762 279 IPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAV 358 (443)
Q Consensus 279 ~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i 358 (443)
....+++||||+++++|++.++++.+++ ... ..... ..|..+|.. ..+|+|
T Consensus 330 -----------~~~~aIlDSGTSli~lP~~~~~~i~~~l----~~~-~~~~~----------~~y~~~C~~---~~lP~i 380 (450)
T PTZ00013 330 -----------QKANVIVDSGTTTITAPSEFLNKFFANL----NVI-KVPFL----------PFYVTTCDN---KEMPTL 380 (450)
T ss_pred -----------cccceEECCCCccccCCHHHHHHHHHHh----CCe-ecCCC----------CeEEeecCC---CCCCeE
Confidence 2346999999999999999888866555 211 11011 123334432 578999
Q ss_pred EEEEeCcEEEEcCCceeEecCCcccCCCceEEE-EEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcCC
Q 043762 359 SLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCF-TFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVR 431 (443)
Q Consensus 359 ~~~f~g~~~~i~~~~~i~~~~~~~~~~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 431 (443)
+|.|+|.+++|+|++|+.+.. ...+..|+ ++++.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 381 ~F~~~g~~~~L~p~~Yi~~~~----~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 381 EFKSANNTYTLEPEYYMNPLL----DVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEECCEEEEECHHHheehhc----cCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 999999999999999997531 12345897 5765443 23579999999999999999999999999986
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.8e-50 Score=399.77 Aligned_cols=317 Identities=22% Similarity=0.318 Sum_probs=236.0
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCCce
Q 043762 68 SLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHA 147 (443)
Q Consensus 68 ~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c~~ 147 (443)
.|+++|.||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++... |.|
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-~~~~~~f~~~~SsT~~~~~------------------------~~~ 57 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH-PFIHTYFHRELSSTYRDLG------------------------KGV 57 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCC-ccccccCCchhCcCcccCC------------------------ceE
Confidence 599999999999999999999999999999876 4457899999999998764 469
Q ss_pred EEecCCCCceeeeEEEEEEEeCCccccc--eEEeEeeccccCCCCCCCCccccccccCCCc------------chhhhcc
Q 043762 148 TLSYADASSSEGNLASDQFFIGSSEISG--LVFGCMDSVFSSSSDEDGKNTGLMGMNRGSL------------SFVSQMG 213 (443)
Q Consensus 148 ~i~Y~~g~~~~G~~~~D~v~i~~~~~~~--~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~------------s~~~ql~ 213 (443)
.+.|++| ++.|.+++|+|+|++..... +.|+++..... ........+||||||++.+ ++++|..
T Consensus 58 ~i~Yg~G-s~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~-~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~ 135 (364)
T cd05473 58 TVPYTQG-SWEGELGTDLVSIPKGPNVTFRANIAAITESEN-FFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTG 135 (364)
T ss_pred EEEECcc-eEEEEEEEEEEEECCCCccceEEeeEEEecccc-ceecccccceeeeecccccccCCCCCCCHHHHHHhccC
Confidence 9999999 68999999999998642111 23445443221 1112236899999999765 3445533
Q ss_pred c-CeEEEEecCC----------CCceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCC
Q 043762 214 F-PKFSYCISGA----------DFSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPR 281 (443)
Q Consensus 214 ~-~~Fs~~L~~~----------~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 281 (443)
. ++||+||... ...|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+.++.
T Consensus 136 ~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~---------~~~~v~l~~i~vg~~~~~~~~ 206 (364)
T cd05473 136 IPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE---------WYYEVIILKLEVGGQSLNLDC 206 (364)
T ss_pred CccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc---------eeEEEEEEEEEECCEeccccc
Confidence 3 6899988531 14799999999965 9999999999864 689999999999999886543
Q ss_pred CccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEE
Q 043762 282 SVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLV 361 (443)
Q Consensus 282 ~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~ 361 (443)
..+ ....++|||||+++++|++++++|.+++.++.... ... ..+ +.++..+|+..... ....+|+|+|+
T Consensus 207 ~~~-----~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~--~~~-~~~-~~~~~~~C~~~~~~--~~~~~P~i~~~ 275 (364)
T cd05473 207 KEY-----NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIE--DFP-DGF-WLGSQLACWQKGTT--PWEIFPKISIY 275 (364)
T ss_pred ccc-----cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccc--cCC-ccc-cCcceeecccccCc--hHhhCCcEEEE
Confidence 322 12369999999999999999999988886654311 000 110 11223468765321 12469999999
Q ss_pred EeC------cEEEEcCCceeEecCCcccCCCceEEEEEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcCCCCch
Q 043762 362 FRG------AEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLA 435 (443)
Q Consensus 362 f~g------~~~~i~~~~~i~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~~ 435 (443)
|+| .++.|+|++|+.... ....+..|+++..... .+.||||+.|||++|+|||++++|||||+++|+..
T Consensus 276 f~g~~~~~~~~l~l~p~~Y~~~~~---~~~~~~~C~~~~~~~~--~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 276 LRDENSSQSFRITILPQLYLRPVE---DHGTQLDCYKFAISQS--TNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred EccCCCCceEEEEECHHHhhhhhc---cCCCcceeeEEeeecC--CCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 975 368999999998631 1123457986433221 24599999999999999999999999999999875
Q ss_pred h
Q 043762 436 G 436 (443)
Q Consensus 436 ~ 436 (443)
.
T Consensus 351 ~ 351 (364)
T cd05473 351 D 351 (364)
T ss_pred c
Confidence 4
No 17
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.4e-49 Score=388.86 Aligned_cols=326 Identities=26% Similarity=0.444 Sum_probs=254.7
Q ss_pred eCCCCce-EEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCC-------CCCCCCCCCCCc
Q 043762 75 VGTPPQN-VSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFT-------IPVSCDNNSLCH 146 (443)
Q Consensus 75 vGtP~Q~-~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~-------~~~~c~~~~~c~ 146 (443)
+|||-.+ +.|+|||||+++||+|.. .+|+|++.+.|+++.|....+.-. ....|. ++.|.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-----------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~-~~~C~ 69 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-----------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCG-NNTCT 69 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-----------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCC-CCcCe
Confidence 5788777 999999999999999975 468899999999999986543211 012453 35698
Q ss_pred eEEe-cCCCCceeeeEEEEEEEeCC--------ccccceEEeEeeccccCCCCCCCCccccccccCCCcchhhhccc---
Q 043762 147 ATLS-YADASSSEGNLASDQFFIGS--------SEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGF--- 214 (443)
Q Consensus 147 ~~i~-Y~~g~~~~G~~~~D~v~i~~--------~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~--- 214 (443)
|... |++|+...|++++|+++++. .+++++.|||+..... ......++||||||++.+|++.|+..
T Consensus 70 y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~--~~~~~~~dGIlGLg~~~lSl~sql~~~~~ 147 (362)
T cd05489 70 AHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLL--KGLPPGAQGVAGLGRSPLSLPAQLASAFG 147 (362)
T ss_pred eEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccc--cCCccccccccccCCCccchHHHhhhhcC
Confidence 8765 77888999999999999973 2688999999987432 12234589999999999999999764
Q ss_pred --CeEEEEecCC-CCceeEEeCCCCCC-C------CCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCcc
Q 043762 215 --PKFSYCISGA-DFSGLLLLGDADLP-W------LLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVF 284 (443)
Q Consensus 215 --~~Fs~~L~~~-~~~G~l~fGg~d~~-~------~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 284 (443)
++||+||.+. +..|.|+||+.+.. + .+++.|+|++..... ..+|.|+|++|+||++++.+++..+
T Consensus 148 ~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~-----~~~Y~v~l~~IsVg~~~l~~~~~~~ 222 (362)
T cd05489 148 VARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRK-----SGEYYIGVTSIAVNGHAVPLNPTLS 222 (362)
T ss_pred CCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCC-----CCceEEEEEEEEECCEECCCCchhc
Confidence 7899999864 25899999999964 4 378999999875321 2689999999999999998876665
Q ss_pred ccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCC--CCCCCCCeEEEEE
Q 043762 285 VPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQ--SRLPQLPAVSLVF 362 (443)
Q Consensus 285 ~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~--~~~~~~p~i~~~f 362 (443)
.....+...++|||||++++||.++|++|.+++.+++........... ....||...... .....+|+|+|+|
T Consensus 223 ~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~-----~~~~C~~~~~~~~~~~~~~~P~it~~f 297 (362)
T cd05489 223 ANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAV-----FPELCYPASALGNTRLGYAVPAIDLVL 297 (362)
T ss_pred cccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCC-----CcCccccCCCcCCcccccccceEEEEE
Confidence 544455677999999999999999999999999887764211111110 125798754211 1136899999999
Q ss_pred eC--cEEEEcCCceeEecCCcccCCCceEEEEEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcC
Q 043762 363 RG--AEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQV 430 (443)
Q Consensus 363 ~g--~~~~i~~~~~i~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 430 (443)
+| .+|.|+|++|+++. ..+.+|++|+..+....+.||||+.|||++|++||.+++|||||++
T Consensus 298 ~g~g~~~~l~~~ny~~~~------~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 298 DGGGVNWTIFGANSMVQV------KGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eCCCeEEEEcCCceEEEc------CCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 86 99999999999985 3456899988765422357999999999999999999999999975
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=9.1e-50 Score=378.01 Aligned_cols=257 Identities=40% Similarity=0.699 Sum_probs=222.1
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCCce
Q 043762 68 SLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHA 147 (443)
Q Consensus 68 ~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c~~ 147 (443)
+|+++|+||||+|+++|+|||||+++||+| | .|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--~---------------------------------------------~~ 33 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--C---------------------------------------------SY 33 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--C---------------------------------------------ce
Confidence 389999999999999999999999999986 1 27
Q ss_pred EEecCCCCceeeeEEEEEEEeCCc--cccceEEeEeeccccCCCCCCCCccccccccCCCcchhhhcccC--eEEEEecC
Q 043762 148 TLSYADASSSEGNLASDQFFIGSS--EISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGFP--KFSYCISG 223 (443)
Q Consensus 148 ~i~Y~~g~~~~G~~~~D~v~i~~~--~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~--~Fs~~L~~ 223 (443)
.+.|+||+.+.|.+++|+|.+++. +++++.|||++.+.. ......+||||||+...+++.|+... +||+||.+
T Consensus 34 ~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~---~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~ 110 (265)
T cd05476 34 EYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEG---GSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVP 110 (265)
T ss_pred EeEeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccC---CccCCCCEEEECCCCcccHHHHhhcccCeeEEEccC
Confidence 899999889999999999999998 899999999998653 45568999999999999999999875 99999987
Q ss_pred C---CCceeEEeCCCCCCCCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccCCCCCCcEEEcccC
Q 043762 224 A---DFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGT 300 (443)
Q Consensus 224 ~---~~~G~l~fGg~d~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ailDTGt 300 (443)
. +..|+|+||++|+++.+++.|+|++..+. ...+|.|++++|+|+++.+.++.............++|||||
T Consensus 111 ~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~-----~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGT 185 (265)
T cd05476 111 HDDTGGSSPLILGDAADLGGSGVVYTPLVKNPA-----NPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGT 185 (265)
T ss_pred CCCCCCCCeEEECCcccccCCCceEeecccCCC-----CCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCC
Confidence 3 46899999999977999999999987521 126899999999999998876554433334556789999999
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEe-CcEEEEcCCceeEecC
Q 043762 301 QFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFR-GAEMSVSGDRLLYRAP 379 (443)
Q Consensus 301 ~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~-g~~~~i~~~~~i~~~~ 379 (443)
+++++|++++ |+|+|+|+ |.++.+++++|+.+.
T Consensus 186 s~~~lp~~~~---------------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~- 219 (265)
T cd05476 186 TLTYLPDPAY---------------------------------------------PDLTLHFDGGADLELPPENYFVDV- 219 (265)
T ss_pred cceEcCcccc---------------------------------------------CCEEEEECCCCEEEeCcccEEEEC-
Confidence 9999998755 47999999 899999999999863
Q ss_pred CcccCCCceEEEEEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcCCC
Q 043762 380 GEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRC 432 (443)
Q Consensus 380 ~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c 432 (443)
..+..|+++.... ..+.||||++|||++|++||++++|||||+++|
T Consensus 220 -----~~~~~C~~~~~~~--~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 220 -----GEGVVCLAILSSS--SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred -----CCCCEEEEEecCC--CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 4566899987764 236799999999999999999999999999999
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=9.7e-49 Score=373.69 Aligned_cols=261 Identities=22% Similarity=0.322 Sum_probs=213.1
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC---CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCC
Q 043762 69 LTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT---RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLC 145 (443)
Q Consensus 69 y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c---~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c 145 (443)
|+++|+||||+|++.|+|||||+++||+|+.| .|..+..|++++|+|++... .|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~-----------------------~~ 57 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP-----------------------GA 57 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC-----------------------Cc
Confidence 78999999999999999999999999998887 44557789999999987642 35
Q ss_pred ceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcch---------h----hhc
Q 043762 146 HATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSF---------V----SQM 212 (443)
Q Consensus 146 ~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~---------~----~ql 212 (443)
.|.+.|++|+.+.|.+++|+|++++.+++++.||+++..... .+....++||||||++..+. . +|.
T Consensus 58 ~~~i~Y~~G~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 58 TWSISYGDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSAS-FFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EEEEEeCCCCeEEEEEEEEEEEECCEEECCeEEEEEeecCcc-ccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 699999999779999999999999999999999999886531 23456899999999976542 2 233
Q ss_pred ccCeEEEEecCCCCceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccCCCCC
Q 043762 213 GFPKFSYCISGADFSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGA 291 (443)
Q Consensus 213 ~~~~Fs~~L~~~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 291 (443)
.++.||+||.+ +..|+|+|||+|+. |.|+++|+|+... ..+|.|++++|+|+++... ....
T Consensus 137 ~~~~Fs~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~--------~~~w~v~l~~i~v~~~~~~---------~~~~ 198 (278)
T cd06097 137 DAPLFTADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNS--------SGFWQFTSTSYTVGGDAPW---------SRSG 198 (278)
T ss_pred cCceEEEEecC-CCCcEEEEeccChHHcCCceEEEEccCC--------CcEEEEEEeeEEECCccee---------ecCC
Confidence 34799999986 46899999999965 9999999999863 1689999999999987432 1234
Q ss_pred CcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEeCcEEEEcC
Q 043762 292 GQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSVSG 371 (443)
Q Consensus 292 ~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~g~~~~i~~ 371 (443)
..++|||||+++++|.++++++.+++ .+.. .+. ...+|.++|+. .+|+|+|+|
T Consensus 199 ~~~iiDSGTs~~~lP~~~~~~l~~~l----~g~~---~~~-------~~~~~~~~C~~----~~P~i~f~~--------- 251 (278)
T cd06097 199 FSAIADTGTTLILLPDAIVEAYYSQV----PGAY---YDS-------EYGGWVFPCDT----TLPDLSFAV--------- 251 (278)
T ss_pred ceEEeecCCchhcCCHHHHHHHHHhC----cCCc---ccC-------CCCEEEEECCC----CCCCEEEEE---------
Confidence 57999999999999999988866554 2211 111 12457788863 389999998
Q ss_pred CceeEecCCcccCCCceEEEEEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEc
Q 043762 372 DRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQ 429 (443)
Q Consensus 372 ~~~i~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 429 (443)
.||||++|||++|+|||++++|||||+
T Consensus 252 -------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 399999999999999999999999996
No 20
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.2e-47 Score=364.78 Aligned_cols=257 Identities=25% Similarity=0.448 Sum_probs=210.2
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCeeEEeCC-CCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCCc
Q 043762 68 SLTVSLTVGTPPQNVSMVLDTGSELSWLHCN-NTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCH 146 (443)
Q Consensus 68 ~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~-~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c~ 146 (443)
+|+++|+||||+|++.|+|||||+++||+|+ .|. . | .|.
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~------------------~------------------c----~c~ 41 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT------------------G------------------C----QCD 41 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC------------------C------------------C----cCc
Confidence 5999999999999999999999999999985 331 1 1 245
Q ss_pred eEEecCCCCceeeeEEEEEEEeCC----ccccceEEeEeeccccCCCCCCCCccccccccCCCcchhhhccc-----CeE
Q 043762 147 ATLSYADASSSEGNLASDQFFIGS----SEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGF-----PKF 217 (443)
Q Consensus 147 ~~i~Y~~g~~~~G~~~~D~v~i~~----~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~-----~~F 217 (443)
|.++|+|++.+.|.+++|+|+++. ..++++.|||+..+...........+||||||+...++++|+.. ++|
T Consensus 42 ~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~F 121 (273)
T cd05475 42 YEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVI 121 (273)
T ss_pred cEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceE
Confidence 899999888999999999999964 46789999999876542223445789999999999999998764 689
Q ss_pred EEEecCCCCceeEEeCCCCCCCCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccCCCCCCcEEEc
Q 043762 218 SYCISGADFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVD 297 (443)
Q Consensus 218 s~~L~~~~~~G~l~fGg~d~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ailD 297 (443)
|+||.+ +.+|.|+||+ +.++.+++.|+|+..... ..+|.|++.+|+|+++.+. ..+..++||
T Consensus 122 s~~l~~-~~~g~l~~G~-~~~~~g~i~ytpl~~~~~------~~~y~v~l~~i~vg~~~~~----------~~~~~~ivD 183 (273)
T cd05475 122 GHCLSS-NGGGFLFFGD-DLVPSSGVTWTPMRRESQ------KKHYSPGPASLLFNGQPTG----------GKGLEVVFD 183 (273)
T ss_pred EEEccC-CCCeEEEECC-CCCCCCCeeecccccCCC------CCeEEEeEeEEEECCEECc----------CCCceEEEE
Confidence 999986 4579999984 344778999999986531 2689999999999998542 334579999
Q ss_pred ccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEeC----cEEEEcCCc
Q 043762 298 SGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRG----AEMSVSGDR 373 (443)
Q Consensus 298 TGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~g----~~~~i~~~~ 373 (443)
|||+++++|++.| +|+|+|+|++ ++++|+|++
T Consensus 184 TGTt~t~lp~~~y--------------------------------------------~p~i~~~f~~~~~~~~~~l~~~~ 219 (273)
T cd05475 184 SGSSYTYFNAQAY--------------------------------------------FKPLTLKFGKGWRTRLLEIPPEN 219 (273)
T ss_pred CCCceEEcCCccc--------------------------------------------cccEEEEECCCCceeEEEeCCCc
Confidence 9999999998754 3578999986 699999999
Q ss_pred eeEecCCcccCCCceEEEEEEcCCC-CCCCceeecccceeeeEEEEeCCCCEEEEEcCCC
Q 043762 374 LLYRAPGEVRGIDSVYCFTFGNSDL-LGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRC 432 (443)
Q Consensus 374 ~i~~~~~~~~~~~~~~C~~i~~~~~-~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c 432 (443)
|+.+. ..+..|+++..... ...+.||||+.|||++|+|||++++|||||+++|
T Consensus 220 y~~~~------~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 220 YLIIS------EKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred eEEEc------CCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 99874 34568998765443 2235799999999999999999999999999999
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.7e-46 Score=360.24 Aligned_cols=274 Identities=24% Similarity=0.373 Sum_probs=220.8
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCCce
Q 043762 68 SLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHA 147 (443)
Q Consensus 68 ~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c~~ 147 (443)
.|+++|.||||+|+++|+|||||+++||+ . |
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------~--------------------------~ 32 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------D--------------------------F 32 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------e--------------------------e
Confidence 59999999999999999999999999997 1 7
Q ss_pred EEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCc-----------chhhhcc---
Q 043762 148 TLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSL-----------SFVSQMG--- 213 (443)
Q Consensus 148 ~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~--- 213 (443)
.+.|++|+.+.|.+++|++++++.+++++.|||++.. ...+||||||+... ++++||.
T Consensus 33 ~~~Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~--------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 33 SISYGDGTSASGTWGTDTVSIGGATVKNLQFAVANST--------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred EEEeccCCcEEEEEEEEEEEECCeEecceEEEEEecC--------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 8999998899999999999999999999999999873 25799999999776 4666653
Q ss_pred ---cCeEEEEecCCC-CceeEEeCCCCC-CCCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccCC
Q 043762 214 ---FPKFSYCISGAD-FSGLLLLGDADL-PWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDH 288 (443)
Q Consensus 214 ---~~~Fs~~L~~~~-~~G~l~fGg~d~-~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ 288 (443)
++.||+||.+.+ ..|.|+|||+|+ ++.|++.|+|+...... ....+|.|++++|+++++.++.+. .
T Consensus 105 ~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~---~~~~~~~v~l~~i~v~~~~~~~~~------~ 175 (295)
T cd05474 105 LIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGG---SEPSELSVTLSSISVNGSSGNTTL------L 175 (295)
T ss_pred cccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCC---CCceEEEEEEEEEEEEcCCCcccc------c
Confidence 478999998753 689999999996 49999999999876321 112689999999999998865321 2
Q ss_pred CCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEeCcEEE
Q 043762 289 TGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMS 368 (443)
Q Consensus 289 ~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~g~~~~ 368 (443)
.....++|||||++++||.+++++|.+++.+.... ... .+..+|+.. .. |+|+|+|+|.+++
T Consensus 176 ~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~------~~~----~~~~~C~~~-------~~-p~i~f~f~g~~~~ 237 (295)
T cd05474 176 SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS------DEG----LYVVDCDAK-------DD-GSLTFNFGGATIS 237 (295)
T ss_pred CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC------CCc----EEEEeCCCC-------CC-CEEEEEECCeEEE
Confidence 34567999999999999999999988777433211 111 123455543 34 9999999999999
Q ss_pred EcCCceeEecCCcccCCCceEEE-EEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcC
Q 043762 369 VSGDRLLYRAPGEVRGIDSVYCF-TFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQV 430 (443)
Q Consensus 369 i~~~~~i~~~~~~~~~~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 430 (443)
||+++|+++... ....+..|+ +|.+.+. +.||||++|||++|++||.+++|||||++
T Consensus 238 i~~~~~~~~~~~--~~~~~~~C~~~i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 238 VPLSDLVLPAST--DDGGDGACYLGIQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEHHHhEecccc--CCCCCCCeEEEEEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 999999987410 012356785 6877653 46999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.8e-47 Score=370.85 Aligned_cols=296 Identities=26% Similarity=0.467 Sum_probs=236.8
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC----CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCC
Q 043762 68 SLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT----RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNS 143 (443)
Q Consensus 68 ~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c----~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~ 143 (443)
.|+++|.||||+|+++|++||||+++||++..| .|..+..|++++|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-----------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-----------------------
Confidence 499999999999999999999999999997777 25678899999999988754
Q ss_pred CCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCc-------chhhh-----
Q 043762 144 LCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSL-------SFVSQ----- 211 (443)
Q Consensus 144 ~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~-------s~~~q----- 211 (443)
+.+.+.|++|. +.|.++.|+|++++..+.++.||++....+ ..+.....+||||||++.. +++.|
T Consensus 58 -~~~~~~y~~g~-~~G~~~~D~v~ig~~~~~~~~f~~~~~~~~-~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 58 -KPFSISYGDGS-VSGNLVSDTVSIGGLTIPNQTFGLADSYSG-DPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp -EEEEEEETTEE-EEEEEEEEEEEETTEEEEEEEEEEEEEEES-HHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred -eeeeeeccCcc-cccccccceEeeeeccccccceeccccccc-cccccccccccccccCCcccccccCCcceecchhhc
Confidence 34899999995 999999999999999999999999998532 1234557999999997543 34444
Q ss_pred -cccCeEEEEecCCC-CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccCC
Q 043762 212 -MGFPKFSYCISGAD-FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDH 288 (443)
Q Consensus 212 -l~~~~Fs~~L~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ 288 (443)
+.+++||++|.+.+ ..|.|+|||+|++ |.|++.|+|+... .+|.+.+++|.++++... .
T Consensus 135 ~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~---------~~w~v~~~~i~i~~~~~~---------~ 196 (317)
T PF00026_consen 135 LISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS---------GYWSVPLDSISIGGESVF---------S 196 (317)
T ss_dssp SSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST---------TTTEEEEEEEEETTEEEE---------E
T ss_pred cccccccceeeeecccccchheeeccccccccCceeccCcccc---------cccccccccccccccccc---------c
Confidence 44589999999875 7899999999976 9999999999944 689999999999998322 1
Q ss_pred CCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEeCcEEE
Q 043762 289 TGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMS 368 (443)
Q Consensus 289 ~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~g~~~~ 368 (443)
.....++||||++++++|..+++++++.+..... . .++.++|+.. ..+|.++|.|++.++.
T Consensus 197 ~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~-------~----------~~~~~~c~~~--~~~p~l~f~~~~~~~~ 257 (317)
T PF00026_consen 197 SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS-------D----------GVYSVPCNST--DSLPDLTFTFGGVTFT 257 (317)
T ss_dssp EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE-------C----------SEEEEETTGG--GGSEEEEEEETTEEEE
T ss_pred ccceeeecccccccccccchhhHHHHhhhccccc-------c----------eeEEEecccc--cccceEEEeeCCEEEE
Confidence 2234699999999999999999887666621111 0 2455566432 6789999999999999
Q ss_pred EcCCceeEecCCcccCCCceEEEE-EEcCC-CCCCCceeecccceeeeEEEEeCCCCEEEEEcC
Q 043762 369 VSGDRLLYRAPGEVRGIDSVYCFT-FGNSD-LLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQV 430 (443)
Q Consensus 369 i~~~~~i~~~~~~~~~~~~~~C~~-i~~~~-~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 430 (443)
|+|++|+.+.. ......|+. |...+ ......+|||.+|||++|+|||++++|||||+|
T Consensus 258 i~~~~~~~~~~----~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 258 IPPSDYIFKIE----DGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEHHHHEEEES----STTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ecchHhccccc----ccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 99999999852 222338975 66622 123467999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.4e-42 Score=332.19 Aligned_cols=262 Identities=31% Similarity=0.522 Sum_probs=213.2
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC-CC--CCCCC--CCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCC
Q 043762 69 LTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT-RY--SYPNA--FDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNS 143 (443)
Q Consensus 69 y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c-~~--~~~~~--y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~ 143 (443)
|+++|.||||+|+++|+|||||+++||+|..| .| +.... |++..|++... +
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~------------------------~ 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKD------------------------T 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeec------------------------C
Confidence 78999999999999999999999999999988 22 22222 56655555433 4
Q ss_pred CCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCC------cchhhhcc----
Q 043762 144 LCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGS------LSFVSQMG---- 213 (443)
Q Consensus 144 ~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~---- 213 (443)
.|.+.+.|++| .+.|.+++|+|++++.+++++.|||++.... .......+||||||+.. .++++|+.
T Consensus 57 ~~~~~~~Y~~g-~~~g~~~~D~v~~~~~~~~~~~fg~~~~~~~--~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 57 GCTFSITYGDG-SVTGGLGTDTVTIGGLTIPNQTFGCATSESG--DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred CCEEEEEECCC-eEEEEEEEeEEEECCEEEeceEEEEEeccCC--cccccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 57899999998 8999999999999999999999999998753 24566899999999987 67777754
Q ss_pred --cCeEEEEecCC---CCceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccC
Q 043762 214 --FPKFSYCISGA---DFSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPD 287 (443)
Q Consensus 214 --~~~Fs~~L~~~---~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 287 (443)
+++||+||.+. ...|.|+|||+|++ +.+++.|+|+.... ..+|.|.+++|.+++.....
T Consensus 134 i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~-------~~~~~v~l~~i~v~~~~~~~-------- 198 (283)
T cd05471 134 ISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNG-------PGYWQVPLDGISVGGKSVIS-------- 198 (283)
T ss_pred CCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCC-------CCEEEEEeCeEEECCceeee--------
Confidence 38999999984 47999999999976 89999999999851 27899999999999874110
Q ss_pred CCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEeCcEE
Q 043762 288 HTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEM 367 (443)
Q Consensus 288 ~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~g~~~ 367 (443)
......++||||+++++||.+++++|++++...... ...|+..+|.. ...+|+|+|+|
T Consensus 199 ~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------------~~~~~~~~~~~--~~~~p~i~f~f----- 256 (283)
T cd05471 199 SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------------SDGGYGVDCSP--CDTLPDITFTF----- 256 (283)
T ss_pred cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------------cCCcEEEeCcc--cCcCCCEEEEE-----
Confidence 244567999999999999999999988877444332 01234444332 28899999999
Q ss_pred EEcCCceeEecCCcccCCCceEEEEEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEc
Q 043762 368 SVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQ 429 (443)
Q Consensus 368 ~i~~~~~i~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 429 (443)
.+|||++|||++|++||++++|||||+
T Consensus 257 -----------------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----------------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----------------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 389999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=7.4e-29 Score=216.76 Aligned_cols=154 Identities=45% Similarity=0.795 Sum_probs=125.8
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCCceE
Q 043762 69 LTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHAT 148 (443)
Q Consensus 69 y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c~~~ 148 (443)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+|++.+.|.++.|...+.. .+..|..++.|.|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~--~~~~~~~~~~C~y~ 72 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF--CPCCCCSNNSCPYS 72 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----------STT-TTSSBEC-BTTSHHHHHCTSS--BTCCTCESSEEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC------CCcccCCccCCcccccCCCCcchhhcccc--cccCCCCcCcccce
Confidence 89999999999999999999999999999 37899999999999999999999876543 22344567899999
Q ss_pred EecCCCCceeeeEEEEEEEeCCc-----cccceEEeEeeccccCCCCCCCCccccccccCCCcchhhhc---ccCeEEEE
Q 043762 149 LSYADASSSEGNLASDQFFIGSS-----EISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQM---GFPKFSYC 220 (443)
Q Consensus 149 i~Y~~g~~~~G~~~~D~v~i~~~-----~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql---~~~~Fs~~ 220 (443)
+.|++++.+.|.+++|+++++.. .+.++.|||++...+ .....+||||||+..+||+.|| ..++||+|
T Consensus 73 ~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g----~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyC 148 (164)
T PF14543_consen 73 QSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSG----LFYGADGILGLGRGPLSLPSQLASSSGNKFSYC 148 (164)
T ss_dssp EEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGT----SSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEE
T ss_pred eecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeecccc----CCcCCCcccccCCCcccHHHHHHHhcCCeEEEE
Confidence 99999999999999999999764 578999999999764 2338999999999999999999 77999999
Q ss_pred ecC--CCCceeEEeCC
Q 043762 221 ISG--ADFSGLLLLGD 234 (443)
Q Consensus 221 L~~--~~~~G~l~fGg 234 (443)
|.+ .+..|.|+||+
T Consensus 149 L~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 149 LPSSSPSSSGFLSFGD 164 (164)
T ss_dssp B-S-SSSSEEEEEECS
T ss_pred CCCCCCCCCEEEEeCc
Confidence 998 34899999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.90 E-value=2e-23 Score=182.32 Aligned_cols=158 Identities=36% Similarity=0.568 Sum_probs=121.1
Q ss_pred eEEEEEceEEecCeecCCCCCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCccc
Q 043762 262 AYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDL 341 (443)
Q Consensus 262 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
+|.|+|.+|+||+++++++...+++ ..+...++|||||++++||+++|++|++++.+++.......... ....+..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~---~~~~~~~ 76 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAP---PFSGFDL 76 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE------TT-S-
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccc---cCCCCCc
Confidence 4899999999999999999998876 67788999999999999999999999999999987642000000 1224679
Q ss_pred ceecCCC--CCCCCCCCeEEEEEe-CcEEEEcCCceeEecCCcccCCCceEEEEEEcCCCCCCCceeecccceeeeEEEE
Q 043762 342 CYRVPQN--QSRLPQLPAVSLVFR-GAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEF 418 (443)
Q Consensus 342 C~~~~~~--~~~~~~~p~i~~~f~-g~~~~i~~~~~i~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vf 418 (443)
||+.+.. ......+|+|+|+|. |.+++|++++|+++. .++..|++|.++.....+..|||..+|++++++|
T Consensus 77 Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~------~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~f 150 (161)
T PF14541_consen 77 CYNLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQV------SPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVF 150 (161)
T ss_dssp EEEGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEE------CTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEE
T ss_pred eeeccccccccccccCCeEEEEEeCCcceeeeccceeeec------cCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEE
Confidence 9999872 122478999999999 789999999999986 4668999998883324467999999999999999
Q ss_pred eCCCCEEEEEc
Q 043762 419 DLERSRIGMAQ 429 (443)
Q Consensus 419 D~~~~riGfa~ 429 (443)
|++++||||+|
T Consensus 151 Dl~~~~igF~~ 161 (161)
T PF14541_consen 151 DLENGRIGFAP 161 (161)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEeC
Confidence 99999999986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=4.3e-22 Score=162.42 Aligned_cols=105 Identities=30% Similarity=0.571 Sum_probs=89.0
Q ss_pred EEEEeCCCCceEEEEEeCCCCeeEEeCCCC---CCCCCCCC-CCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCCc
Q 043762 71 VSLTVGTPPQNVSMVLDTGSELSWLHCNNT---RYSYPNAF-DPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCH 146 (443)
Q Consensus 71 ~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c---~~~~~~~y-~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c~ 146 (443)
++|.||||+|++.|+|||||+++||+|..| .|..++.| +|+.|++++.. .|.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~------------------------~~~ 56 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDN------------------------GCT 56 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCC------------------------CcE
Confidence 479999999999999999999999999887 33345566 99999988764 357
Q ss_pred eEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccc
Q 043762 147 ATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGM 201 (443)
Q Consensus 147 ~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGL 201 (443)
|.+.|++| .+.|.++.|+|+|++..++++.|||++...+. .+.....+|||||
T Consensus 57 ~~~~Y~~g-~~~g~~~~D~v~ig~~~~~~~~fg~~~~~~~~-~~~~~~~~GilGL 109 (109)
T cd05470 57 FSITYGTG-SLSGGLSTDTVSIGDIEVVGQAFGCATDEPGA-TFLPALFDGILGL 109 (109)
T ss_pred EEEEeCCC-eEEEEEEEEEEEECCEEECCEEEEEEEecCCc-cccccccccccCC
Confidence 99999998 68899999999999999999999999987542 2344578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.17 E-value=6.3e-06 Score=64.79 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=65.1
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCCce
Q 043762 68 SLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHA 147 (443)
Q Consensus 68 ~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c~~ 147 (443)
.|++++.|+ ++++.++||||++.+|+.-... +....... .....
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~----------------~~l~~~~~------------------~~~~~ 45 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELA----------------ERLGLPLT------------------LGGKV 45 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHH----------------HHcCCCcc------------------CCCcE
Confidence 388999999 8999999999999999963211 00000000 00125
Q ss_pred EEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccC
Q 043762 148 TLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNR 203 (443)
Q Consensus 148 ~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~ 203 (443)
.+...+|.........+.+++++.+++++.+..+.... . ..+||||+..
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~d~~~----~---~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQIGGITLRNVPAVVLPGDA----L---GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEECCcEEeccEEEEeCCcc----c---CCceEeChHH
Confidence 66677776666666689999999999999888876532 1 5899999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.12 E-value=0.0016 Score=53.63 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=61.4
Q ss_pred cceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCC
Q 043762 65 HNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSL 144 (443)
Q Consensus 65 ~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~ 144 (443)
.+..|++++.|. ++++.++||||++.+.++..-.. .-..++.. . .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~---~Lgl~~~~------~------------------------~ 52 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ---RLGLDLNR------L------------------------G 52 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcCCCccc------C------------------------C
Confidence 355699999998 89999999999999988632110 00001100 0 0
Q ss_pred CceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccC
Q 043762 145 CHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNR 203 (443)
Q Consensus 145 c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~ 203 (443)
-...+.-..|........-|.+++|+....|+.+.++.... ..+|+||+.+
T Consensus 53 ~~~~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~--------~~~~LLGm~f 103 (121)
T TIGR02281 53 YTVTVSTANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGA--------LSESLLGMSF 103 (121)
T ss_pred ceEEEEeCCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCc--------CCceEcCHHH
Confidence 01234444553333445779999999999999988775421 2379999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.51 E-value=0.013 Score=44.93 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=53.7
Q ss_pred EEEEeCCCCceEEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCCceEEe
Q 043762 71 VSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLS 150 (443)
Q Consensus 71 ~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c~~~i~ 150 (443)
+++.|+ .+++++++|||++.+.+.-.-... . ...+... .....+.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~--l-~~~~~~~------------------------------~~~~~~~ 45 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKK--L-GLKPRPK------------------------------SVPISVS 45 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHH--c-CCCCcCC------------------------------ceeEEEE
Confidence 467888 899999999999988875211000 0 0000000 0012333
Q ss_pred cCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCcccccccc
Q 043762 151 YADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMN 202 (443)
Q Consensus 151 Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg 202 (443)
-.+|.........+.+++++.++.+..+-++.. ....+||||+-
T Consensus 46 ~~~g~~~~~~~~~~~i~ig~~~~~~~~~~v~~~--------~~~~~~iLG~d 89 (90)
T PF13650_consen 46 GAGGSVTVYRGRVDSITIGGITLKNVPFLVVDL--------GDPIDGILGMD 89 (90)
T ss_pred eCCCCEEEEEEEEEEEEECCEEEEeEEEEEECC--------CCCCEEEeCCc
Confidence 334444444555678999998888888776652 23678999973
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.67 E-value=0.072 Score=44.02 Aligned_cols=91 Identities=12% Similarity=0.152 Sum_probs=56.6
Q ss_pred ceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCCCCC
Q 043762 66 NVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLC 145 (443)
Q Consensus 66 ~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~~~c 145 (443)
...+++++.|+ ++++.++||||++.+++.-.-. +..++... ..-
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a----------------~~lgl~~~------------------~~~ 57 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACA----------------EKCGLMRL------------------IDK 57 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHH----------------HHcCCccc------------------cCc
Confidence 34589999999 9999999999999999852211 00110000 000
Q ss_pred ceE-EecC-CCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCcccccccc
Q 043762 146 HAT-LSYA-DASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMN 202 (443)
Q Consensus 146 ~~~-i~Y~-~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg 202 (443)
.+. ...+ ++....|....+.+++++...+ ..|.+... ...|+|||+-
T Consensus 58 ~~~~~~~g~g~~~~~g~~~~~~l~i~~~~~~-~~~~Vl~~---------~~~d~ILG~d 106 (124)
T cd05479 58 RFQGIAKGVGTQKILGRIHLAQVKIGNLFLP-CSFTVLED---------DDVDFLIGLD 106 (124)
T ss_pred ceEEEEecCCCcEEEeEEEEEEEEECCEEee-eEEEEECC---------CCcCEEecHH
Confidence 122 1222 2234567777789999998764 66665543 1689999984
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=95.27 E-value=0.1 Score=40.39 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=24.2
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeEEe
Q 043762 69 LTVSLTVGTPPQNVSMVLDTGSELSWLH 96 (443)
Q Consensus 69 y~~~i~vGtP~Q~~~l~lDTGSs~~wv~ 96 (443)
|++++.|+ ++++.+++||||+.+++.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis 26 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVIS 26 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeC
Confidence 47899999 999999999999999996
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.85 E-value=0.11 Score=42.92 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=22.6
Q ss_pred ceeecccceeeeEEEEeCCCCEEEE
Q 043762 403 AYVIGHHHQQNVWMEFDLERSRIGM 427 (443)
Q Consensus 403 ~~iLG~~fl~~~y~vfD~~~~riGf 427 (443)
..|||..||+.+-.+.|+.+.+|.+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4799999999999999999999864
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=94.31 E-value=0.22 Score=41.78 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=25.8
Q ss_pred ceeecccceeeeEEEEeCCCCEEEEEcC
Q 043762 403 AYVIGHHHQQNVWMEFDLERSRIGMAQV 430 (443)
Q Consensus 403 ~~iLG~~fl~~~y~vfD~~~~riGfa~~ 430 (443)
..|||.++|+.+..+-|+.+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4899999999999999999999999764
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=92.97 E-value=0.72 Score=35.22 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEeCCCCceEEEEEeCCCCeeEEeC
Q 043762 72 SLTVGTPPQNVSMVLDTGSELSWLHC 97 (443)
Q Consensus 72 ~i~vGtP~Q~~~l~lDTGSs~~wv~c 97 (443)
.+.|. ++++.+++|||++.+-+.-
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~ 25 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKS 25 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECH
Confidence 46777 8999999999999999963
No 35
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=91.74 E-value=1.4 Score=42.74 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=35.2
Q ss_pred ecCCCCceeeeEEEEEEEeCCccccceEEeEeecc-------------ccCCCCCCCCccccccccCC
Q 043762 150 SYADASSSEGNLASDQFFIGSSEISGLVFGCMDSV-------------FSSSSDEDGKNTGLMGMNRG 204 (443)
Q Consensus 150 ~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~-------------~~~~~~~~~~~~GIlGLg~~ 204 (443)
.|++| ..=|.+.+-+|+|++....++.+-++.+. ...+........||||+|.-
T Consensus 83 ~F~sg-ytWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASG-YTWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCc-ccccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 37776 66788999999999885544444444221 10123345679999999874
No 36
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=91.55 E-value=0.96 Score=40.12 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCCCCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCC
Q 043762 58 PNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPV 137 (443)
Q Consensus 58 ~~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~ 137 (443)
.+.|....+..|.++..|- +|++..++|||-+.+.++-... ..-.++.+.. .
T Consensus 95 ~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA---~RlGid~~~l-~---------------------- 146 (215)
T COG3577 95 EVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDA---RRLGIDLNSL-D---------------------- 146 (215)
T ss_pred EEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHH---HHhCCCcccc-C----------------------
Confidence 4556677788899999999 9999999999999988863221 0012222111 0
Q ss_pred CCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEee
Q 043762 138 SCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMD 182 (443)
Q Consensus 138 ~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~ 182 (443)
-++.+.-.+|..-....-.|.|.||+..+.|+.--++.
T Consensus 147 -------y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV~A~V~~ 184 (215)
T COG3577 147 -------YTITVSTANGRARAAPVTLDRVQIGGIRVKNVDAMVAE 184 (215)
T ss_pred -------CceEEEccCCccccceEEeeeEEEccEEEcCchhheec
Confidence 02455566775445556679999999988877654443
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=89.17 E-value=0.77 Score=33.77 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.7
Q ss_pred ceEEEEEEEeCCCCceEEEEEeCCCCeeEEeC
Q 043762 66 NVSLTVSLTVGTPPQNVSMVLDTGSELSWLHC 97 (443)
Q Consensus 66 ~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c 97 (443)
...+++++.|| ++.+.+++|||++...++.
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~ 35 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISE 35 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCH
Confidence 45689999999 8999999999999999864
No 38
>PF13650 Asp_protease_2: Aspartyl protease
Probab=83.98 E-value=1 Score=34.09 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=17.5
Q ss_pred cEEEcccCccccccHHHHHH
Q 043762 293 QTMVDSGTQFTFLLGPAYAA 312 (443)
Q Consensus 293 ~ailDTGt~~~~lp~~~~~~ 312 (443)
.++||||++.+.+.+..+++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~ 30 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKK 30 (90)
T ss_pred EEEEcCCCCcEEECHHHHHH
Confidence 48999999999999887765
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.92 E-value=1.6 Score=34.07 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=23.5
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeeEEeC
Q 043762 70 TVSLTVGTPPQNVSMVLDTGSELSWLHC 97 (443)
Q Consensus 70 ~~~i~vGtP~Q~~~l~lDTGSs~~wv~c 97 (443)
+++|.+. ++++.++|||||+.+.++.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~ 32 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISE 32 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecc
Confidence 5889999 8999999999999999973
No 40
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=81.24 E-value=7 Score=31.20 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=19.9
Q ss_pred ceeecccceeeeEEEEeCCCCEE
Q 043762 403 AYVIGHHHQQNVWMEFDLERSRI 425 (443)
Q Consensus 403 ~~iLG~~fl~~~y~vfD~~~~ri 425 (443)
..+||..||+.+-.+.|+.+.++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 57999999999999999887653
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=79.46 E-value=2.5 Score=31.03 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.0
Q ss_pred cEEEcccCccccccHHHHHHH
Q 043762 293 QTMVDSGTQFTFLLGPAYAAL 313 (443)
Q Consensus 293 ~ailDTGt~~~~lp~~~~~~l 313 (443)
.+++|||++..+++....+.+
T Consensus 21 ~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 21 KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEeCCCcceecCHHHHHHh
Confidence 389999999999999877653
No 42
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=79.17 E-value=2.1 Score=32.88 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=23.9
Q ss_pred eEEecCeecCCCCCccccCCCCCCcEEEcccCccccccHHHHHH
Q 043762 269 GIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAA 312 (443)
Q Consensus 269 ~i~v~~~~~~~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~ 312 (443)
.+.|+|+.+ .+++|||++.+.++...+..
T Consensus 4 ~~~Ing~~i---------------~~lvDTGA~~svis~~~~~~ 32 (91)
T cd05484 4 TLLVNGKPL---------------KFQLDTGSAITVISEKTWRK 32 (91)
T ss_pred EEEECCEEE---------------EEEEcCCcceEEeCHHHHHH
Confidence 367788876 38999999999999987765
No 43
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=78.84 E-value=2.1 Score=35.12 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=25.8
Q ss_pred eeEEEEEceEEecCeecCCCCCccccCCCCCCcEEEcccCccccccHHHHHH
Q 043762 261 VAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAA 312 (443)
Q Consensus 261 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~ 312 (443)
++|.+ .++++|+++ .+++|||++.+.++.+..++
T Consensus 10 g~~~v---~~~InG~~~---------------~flVDTGAs~t~is~~~A~~ 43 (121)
T TIGR02281 10 GHFYA---TGRVNGRNV---------------RFLVDTGATSVALNEEDAQR 43 (121)
T ss_pred CeEEE---EEEECCEEE---------------EEEEECCCCcEEcCHHHHHH
Confidence 44544 356777765 48999999999999887765
No 44
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=75.53 E-value=3.1 Score=31.78 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.1
Q ss_pred cEEEcccCccccccHHHHHH
Q 043762 293 QTMVDSGTQFTFLLGPAYAA 312 (443)
Q Consensus 293 ~ailDTGt~~~~lp~~~~~~ 312 (443)
.++||||++.++++.+..+.
T Consensus 15 ~~llDTGa~~s~i~~~~~~~ 34 (96)
T cd05483 15 RFLLDTGASTTVISEELAER 34 (96)
T ss_pred EEEEECCCCcEEcCHHHHHH
Confidence 48999999999999886654
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=75.11 E-value=4.1 Score=31.23 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEeCCCCceEEEEEeCCCCeeEEe
Q 043762 72 SLTVGTPPQNVSMVLDTGSELSWLH 96 (443)
Q Consensus 72 ~i~vGtP~Q~~~l~lDTGSs~~wv~ 96 (443)
.+.|+ +|.+.+++|||..++-+.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~ 24 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIA 24 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEc
Confidence 46777 999999999999999986
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=73.09 E-value=3.4 Score=31.44 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=18.0
Q ss_pred cEEEcccCccccccHHHHHHH
Q 043762 293 QTMVDSGTQFTFLLGPAYAAL 313 (443)
Q Consensus 293 ~ailDTGt~~~~lp~~~~~~l 313 (443)
.+++|||.+.+.+++...+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 489999999999998877653
No 47
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=68.32 E-value=24 Score=27.05 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=18.9
Q ss_pred CCCCCcEEEcccCccccccHHHHH
Q 043762 288 HTGAGQTMVDSGTQFTFLLGPAYA 311 (443)
Q Consensus 288 ~~~~~~ailDTGt~~~~lp~~~~~ 311 (443)
...+...++|||+..+.+|....+
T Consensus 6 ~~s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 6 RTSGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCCCcEEEEeCCCceEeecccccc
Confidence 344567899999999999977543
No 48
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=65.64 E-value=20 Score=34.74 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=30.5
Q ss_pred EE-EEEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcCC
Q 043762 389 YC-FTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVR 431 (443)
Q Consensus 389 ~C-~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 431 (443)
.| +.++...+ -...||...||++-..-|++++++-|+...
T Consensus 307 ~c~ftV~d~~~---~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 307 PCSFTVLDRRD---MDLLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred ccceEEecCCC---cchhhhHHHHHhccceeecccCeEEecCCC
Confidence 46 34554432 238999999999999999999999887643
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=62.53 E-value=5.3 Score=31.11 Aligned_cols=18 Identities=11% Similarity=0.495 Sum_probs=15.3
Q ss_pred cEEEcccCccccccHHHH
Q 043762 293 QTMVDSGTQFTFLLGPAY 310 (443)
Q Consensus 293 ~ailDTGt~~~~lp~~~~ 310 (443)
.++||||+..++++...+
T Consensus 18 ~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 18 KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEETTBSSEEESSGGS
T ss_pred EEEEecCCCcceeccccc
Confidence 499999999999997643
No 50
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=61.09 E-value=16 Score=32.75 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=18.5
Q ss_pred CceeecccceeeeEEEEeCCCCEEEEEc
Q 043762 402 EAYVIGHHHQQNVWMEFDLERSRIGMAQ 429 (443)
Q Consensus 402 ~~~iLG~~fl~~~y~vfD~~~~riGfa~ 429 (443)
-..|||.+|+|.+.--..++ .+|-|-.
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 34999999999876554443 4566544
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=58.22 E-value=9.8 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=22.4
Q ss_pred eEEecCeecCCCCCccccCCCCCCcEEEcccCccccccHHHHHH
Q 043762 269 GIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAA 312 (443)
Q Consensus 269 ~i~v~~~~~~~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~ 312 (443)
.++++|+.+ .|++|||+..+.++...+++
T Consensus 28 ~~~ing~~v---------------kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPV---------------KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEE---------------EEEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEE---------------EEEEeCCCCccccCHHHHHH
Confidence 466788876 49999999999999998765
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=56.89 E-value=15 Score=31.57 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=22.1
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeeEEeC
Q 043762 70 TVSLTVGTPPQNVSMVLDTGSELSWLHC 97 (443)
Q Consensus 70 ~~~i~vGtP~Q~~~l~lDTGSs~~wv~c 97 (443)
...+++++...++.++|||||+.-.+..
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 3455556668999999999999988853
No 53
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=53.98 E-value=12 Score=28.96 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=17.8
Q ss_pred cEEEcccCccccccHHHHHH
Q 043762 293 QTMVDSGTQFTFLLGPAYAA 312 (443)
Q Consensus 293 ~ailDTGt~~~~lp~~~~~~ 312 (443)
.+.+|||++...||...++.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~ 31 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKS 31 (93)
T ss_pred EEEEecCCEEEeccHHHHhh
Confidence 58999999999999887765
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=51.64 E-value=25 Score=28.91 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=21.8
Q ss_pred ceEEEEEEEeCCCCceEEEEEeCCCCeeEEe
Q 043762 66 NVSLTVSLTVGTPPQNVSMVLDTGSELSWLH 96 (443)
Q Consensus 66 ~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~ 96 (443)
...+|++++|+ ++++++.+|||.-.+-+.
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims 50 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMS 50 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEE
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccC
Confidence 33578999999 999999999999998885
No 55
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=37.35 E-value=29 Score=26.80 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.3
Q ss_pred EEeCCCC-ceEEEEEeCCCCeeEEe
Q 043762 73 LTVGTPP-QNVSMVLDTGSELSWLH 96 (443)
Q Consensus 73 i~vGtP~-Q~~~l~lDTGSs~~wv~ 96 (443)
+.+. + +++++.+|||++..-++
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp 25 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLP 25 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEecc
Confidence 4555 5 89999999999988876
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.63 E-value=26 Score=28.57 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=17.6
Q ss_pred EEEcccCc-cccccHHHHHHH
Q 043762 294 TMVDSGTQ-FTFLLGPAYAAL 313 (443)
Q Consensus 294 ailDTGt~-~~~lp~~~~~~l 313 (443)
.++|||-+ ++.+|+.+++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999988763
No 57
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=32.49 E-value=51 Score=29.52 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=26.3
Q ss_pred eeEEEEEceEEecCeecCCCCCccccCCCCCCcEEEcccCccccccHHHHHH
Q 043762 261 VAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAA 312 (443)
Q Consensus 261 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~ 312 (443)
++|.+ ...|||+.+. .++|||.|...++.+..+.
T Consensus 104 GHF~a---~~~VNGk~v~---------------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 104 GHFEA---NGRVNGKKVD---------------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CcEEE---EEEECCEEEE---------------EEEecCcceeecCHHHHHH
Confidence 55655 4678888874 8999999999999875544
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=32.46 E-value=63 Score=25.66 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=20.2
Q ss_pred EEEEeCCCCc----eEEEEEeCCCCeeE-Ee
Q 043762 71 VSLTVGTPPQ----NVSMVLDTGSELSW-LH 96 (443)
Q Consensus 71 ~~i~vGtP~Q----~~~l~lDTGSs~~w-v~ 96 (443)
+++.+..|.| ++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 6788888733 68899999999765 54
No 59
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=32.22 E-value=49 Score=26.02 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=17.8
Q ss_pred cEEEcccCccccccHHHHHH
Q 043762 293 QTMVDSGTQFTFLLGPAYAA 312 (443)
Q Consensus 293 ~ailDTGt~~~~lp~~~~~~ 312 (443)
.|.+|||+..+.+.+.-.+.
T Consensus 11 kAfVDsGaQ~timS~~caer 30 (103)
T cd05480 11 RALVDTGCQYNLISAACLDR 30 (103)
T ss_pred EEEEecCCchhhcCHHHHHH
Confidence 49999999999999988765
No 60
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=26.63 E-value=42 Score=28.93 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=18.0
Q ss_pred CcEEEcccCccccccHHHHHH
Q 043762 292 GQTMVDSGTQFTFLLGPAYAA 312 (443)
Q Consensus 292 ~~ailDTGt~~~~lp~~~~~~ 312 (443)
..++||||++.+++..++.+.
T Consensus 46 i~vLfDSGSPTSfIr~di~~k 66 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEK 66 (177)
T ss_pred EEEEEeCCCccceeehhhHHh
Confidence 469999999999999887765
No 61
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=23.71 E-value=1.1e+02 Score=25.38 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=23.3
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeEEe
Q 043762 69 LTVSLTVGTPPQNVSMVLDTGSELSWLH 96 (443)
Q Consensus 69 y~~~i~vGtP~Q~~~l~lDTGSs~~wv~ 96 (443)
-.+.+.|. .++..++||+|++...+.
T Consensus 22 i~g~~~I~--~~~~~vLiDSGAThsFIs 47 (135)
T PF08284_consen 22 ITGTFLIN--SIPASVLIDSGATHSFIS 47 (135)
T ss_pred EEEEEEec--cEEEEEEEecCCCcEEcc
Confidence 57888898 789999999999999985
No 62
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=21.89 E-value=1.2e+02 Score=21.19 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=16.6
Q ss_pred cEEEcccCccccccHHHHHH
Q 043762 293 QTMVDSGTQFTFLLGPAYAA 312 (443)
Q Consensus 293 ~ailDTGt~~~~lp~~~~~~ 312 (443)
.+++|||++...+..+.++.
T Consensus 11 ~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 11 RALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEcCCCcccccCHHHHHH
Confidence 48999999999888886643
Done!