BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043765
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 189/414 (45%), Gaps = 60/414 (14%)
Query: 58 LNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIP-SSIFTMHTLKFLYFSDNQLSGS 116
L++S + G +PP G+ S L +L LS N SG++P ++ M LK L S N+ SG
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 117 LSSFTFNMS-SMLVSDLSTNRFSGELPETICXX-XXXXXXXXXXXXMIHGKIPSILSKCK 174
L N+S S+L DLS+N FSG + +C GKIP LS C
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 175 XXXXXXXXXXXXSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNL 234
SG IP +G+ + L+ + L N L GEIP E+ ++ +TL L N+L
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 235 VGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNA 294
G + S + N + N++++ L+ NR +G IP +I
Sbjct: 476 TGEIPSGLSNCT-------------------------NLNWISLSNNRLTGEIPKWIGRL 510
Query: 295 SNLTILEMGLNSFSGFIPNKIGNLRTL-QTALSNNPLDGILPSSI--------GNLSISM 345
NL IL++ NSFSG IP ++G+ R+L L+ N +G +P+++ N
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 346 ERLYIFN------CSISGNIPQV------------ISNLTNFTVLQLGGNELTGPVLVTF 387
+YI N C +GN+ + N N T GG+ T P TF
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH--TSP---TF 625
Query: 388 DRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSL 441
D ++ L +S N L+G IP ++ + L L L N+ S SIP +G+L L
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 174/399 (43%), Gaps = 40/399 (10%)
Query: 77 SSLVTLDLSQNKLSGDIPS--SIFTMHTLKFLYFSDNQLS--GSLSSFTFNMSSMLVSDL 132
+SL +LDLS+N LSG + + S+ + LKFL S N L G +S ++S+ V DL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG-GLKLNSLEVLDL 155
Query: 133 STNRFSGE--LPETICXXXXXXXXXXXXXXMIHGKIPSILSKCKXXXXXXXXXXXXSGAI 190
S N SG + + I G + +S+C S I
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 213
Query: 191 PKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKE 250
P +G+ ++LQ + + NKL G+ + L + SN VG + +++
Sbjct: 214 PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQY 270
Query: 251 IDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSF-------------------- 290
+ L N +G +P A + L L+ N F G +P F
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 291 -----ITNASNLTILEMGLNSFSGFIPNKIGNLRT--LQTALSNNPLDG-ILPSSIGNLS 342
+ L +L++ N FSG +P + NL L LS+N G ILP+ N
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 343 ISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNK 402
+++ LY+ N +G IP +SN + L L N L+G + + L L+ L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 403 LAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSL 441
L G IP +L + L+TLILD N+ + IP+ L N T+L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 58 LNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFT---------MHTLKFLYF 108
L +S+ + G IP +LG+ SL+ LDL+ N +G IP+++F + +++Y
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 109 SDNQL------SGSLSSFTFNMSSMLVSDLSTNRFSGELPETICXXXXXXXXXXXXXXMI 162
++ + +G+L F S L NR S P I +
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQL------NRLSTRNPCNI------------TSRVY 617
Query: 163 HGKIPSILSKCKXXXXXXXXXXXXSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLR 222
G SG IPKEIG+ L ++L +N + G IP EVG+LR
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 223 NQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLP 263
+ L L SN L G + + + + EIDL NN+LSG +P
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 39 TYDPTNFLAQNWTSNTSFS---------LNISSFNLQGTIPPQLGNLSSLVTLDLSQNKL 89
T +P N ++ + +TS + L++S L G IP ++G++ L L+L N +
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 90 SGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPE 143
SG IP + + L L S N+L G + ++ + DLS N SG +PE
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 189/414 (45%), Gaps = 60/414 (14%)
Query: 58 LNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIP-SSIFTMHTLKFLYFSDNQLSGS 116
L++S + G +PP G+ S L +L LS N SG++P ++ M LK L S N+ SG
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 117 LSSFTFNMS-SMLVSDLSTNRFSGELPETICXX-XXXXXXXXXXXXMIHGKIPSILSKCK 174
L N+S S+L DLS+N FSG + +C GKIP LS C
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 175 XXXXXXXXXXXXSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNL 234
SG IP +G+ + L+ + L N L GEIP E+ ++ +TL L N+L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 235 VGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNA 294
G + S + N + N++++ L+ NR +G IP +I
Sbjct: 479 TGEIPSGLSNCT-------------------------NLNWISLSNNRLTGEIPKWIGRL 513
Query: 295 SNLTILEMGLNSFSGFIPNKIGNLRTL-QTALSNNPLDGILPSSI--------GNLSISM 345
NL IL++ NSFSG IP ++G+ R+L L+ N +G +P+++ N
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 346 ERLYIFN------CSISGNIPQV------------ISNLTNFTVLQLGGNELTGPVLVTF 387
+YI N C +GN+ + N N T GG+ T P TF
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH--TSP---TF 628
Query: 388 DRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSL 441
D ++ L +S N L+G IP ++ + L L L N+ S SIP +G+L L
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 174/399 (43%), Gaps = 40/399 (10%)
Query: 77 SSLVTLDLSQNKLSGDIPS--SIFTMHTLKFLYFSDNQLS--GSLSSFTFNMSSMLVSDL 132
+SL +LDLS+N LSG + + S+ + LKFL S N L G +S ++S+ V DL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG-GLKLNSLEVLDL 158
Query: 133 STNRFSGE--LPETICXXXXXXXXXXXXXXMIHGKIPSILSKCKXXXXXXXXXXXXSGAI 190
S N SG + + I G + +S+C S I
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216
Query: 191 PKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKE 250
P +G+ ++LQ + + NKL G+ + L + SN VG + +++
Sbjct: 217 PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQY 273
Query: 251 IDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSF-------------------- 290
+ L N +G +P A + L L+ N F G +P F
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 291 -----ITNASNLTILEMGLNSFSGFIPNKIGNLRT--LQTALSNNPLDG-ILPSSIGNLS 342
+ L +L++ N FSG +P + NL L LS+N G ILP+ N
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 343 ISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNK 402
+++ LY+ N +G IP +SN + L L N L+G + + L L+ L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 403 LAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSL 441
L G IP +L + L+TLILD N+ + IP+ L N T+L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 58 LNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFT---------MHTLKFLYF 108
L +S+ + G IP +LG+ SL+ LDL+ N +G IP+++F + +++Y
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 109 SDNQL------SGSLSSFTFNMSSMLVSDLSTNRFSGELPETICXXXXXXXXXXXXXXMI 162
++ + +G+L F S L NR S P I +
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQL------NRLSTRNPCNI------------TSRVY 620
Query: 163 HGKIPSILSKCKXXXXXXXXXXXXSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLR 222
G SG IPKEIG+ L ++L +N + G IP EVG+LR
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 223 NQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLP 263
+ L L SN L G + + + + EIDL NN+LSG +P
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 39 TYDPTNFLAQNWTSNTSFS---------LNISSFNLQGTIPPQLGNLSSLVTLDLSQNKL 89
T +P N ++ + +TS + L++S L G IP ++G++ L L+L N +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 90 SGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPE 143
SG IP + + L L S N+L G + ++ + DLS N SG +PE
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 34/276 (12%)
Query: 58 LNISSFNLQGT--IPPQLGNLSSLVTLDLSQ-NKLSGDIPSSIFTMHTLKFLYFSDNQLS 114
L++S NL IP L NL L L + N L G IP +I + L +LY + +S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 115 GSLSSFTFNMSSMLVSDLSTNRFSGELPETICXXXXXXXXXXXXXXMIHGKIPSILSKCK 174
G++ F + +++ D S N SG LP +I +P+++
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSI------------------SSLPNLVG--- 153
Query: 175 XXXXXXXXXXXXSGAIPKEIGNFTSL-QKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNN 233
SGAIP G+F+ L +++ N+L G+IP NL N + L N
Sbjct: 154 ----ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208
Query: 234 LVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITN 293
L G + ++I L NSL+ +L + L+ N++ L L NR GT+P +T
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS-KNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 294 ASNLTILEMGLNSFSGFIPNKIGNLRTLQ-TALSNN 328
L L + N+ G IP GNL+ +A +NN
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 113/244 (46%), Gaps = 14/244 (5%)
Query: 214 IPLEVGNLRNQDTLWLGS-NNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPN 272
IP + NL + L++G NNLVG + I + + + + + ++SG +P +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKT 126
Query: 273 IDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTAL--SNNPL 330
+ L + N SGT+P I++ NL + N SG IP+ G+ L T++ S N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 331 DGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELT---GPVLVTF 387
G +P + NL+++ L + G+ + + N + L N L G V ++
Sbjct: 187 TGKIPPTFANLNLAFVDLS--RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS- 243
Query: 388 DRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447
+NL GL L +N++ G++P L +L L +L + N IP GNL + S
Sbjct: 244 ---KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299
Query: 448 VADC 451
C
Sbjct: 300 NNKC 303
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 12/185 (6%)
Query: 44 NFLAQNWTSNTSFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTL 103
+FL+Q T +L+ S L GT+PP + +L +LV + N++SG IP S + L
Sbjct: 119 DFLSQ---IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 104 -KFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICXXXXXXXXXXXXXXMI 162
+ S N+L+G + TF ++ DLS N G+ +
Sbjct: 176 FTSMTISRNRLTGKIPP-TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 163 H--GKIPSILSKCKXXXXXXXXXXXXSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGN 220
GK+ K G +P+ + L +++ +N L GEIP + GN
Sbjct: 235 FDLGKV----GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289
Query: 221 LRNQD 225
L+ D
Sbjct: 290 LQRFD 294
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 325 LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVL 384
L +N + + P +L I+++ LY+ + + V +LT TVL LG N+LT
Sbjct: 47 LHDNQITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 385 VTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPT-CLGNLTSLEG 443
FDRL +L+ LF+ NKL +P + RL L L LD N+ +SIP L+SL
Sbjct: 106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTH 163
Query: 444 SLL--NVADC 451
+ L N DC
Sbjct: 164 AYLFGNPWDC 173
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 354 SISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIP----D 409
S+ IP TN +L L N++T FD L NL+ L+L SN+L G++P D
Sbjct: 33 SVPAGIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFD 85
Query: 410 DLCRLHRLD 418
L +L LD
Sbjct: 86 SLTQLTVLD 94
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 4/179 (2%)
Query: 249 KEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308
KE+D SL ++PS +D + S +T + L + L + S
Sbjct: 17 KEVDCQGKSLD-SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 309 GFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTN 368
+ + + L TL L+NN L LP + + +++LY+ + V LT
Sbjct: 76 AGVFDDLTELGTL--GLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132
Query: 369 FTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEF 427
L+L N+L FD+L NLQ L LS+N+L RL +L T+ L GN+F
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 362 VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLC-RLHRLDTL 420
V +LT L L N+L L FD L L L+L N+L S+P + RL +L L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL 136
Query: 421 ILDGNEFSESIP 432
L+ N+ +SIP
Sbjct: 137 RLNTNQL-QSIP 147
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 4/179 (2%)
Query: 249 KEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308
KE+D SL ++PS +D + S +T + L + L + S
Sbjct: 17 KEVDCQGKSLD-SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 309 GFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTN 368
+ + + L TL L+NN L LP + + +++LY+ + V LT
Sbjct: 76 AGVFDDLTELGTL--GLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132
Query: 369 FTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEF 427
L+L N+L FD+L NLQ L LS+N+L RL +L T+ L GN+F
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 362 VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLC-RLHRLDTL 420
V +LT L L N+L L FD L L L+L N+L S+P + RL +L L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL 136
Query: 421 ILDGNEFSESIP 432
L+ N+ +SIP
Sbjct: 137 RLNTNQL-QSIP 147
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 5/164 (3%)
Query: 281 NRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTL-QTALSNNP-LDGILPSSI 338
NR S + + NLTIL + N+ +G L L Q LS+N L + P++
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 339 GNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFL 398
L + L++ C + P + L L L N L TF L NL LFL
Sbjct: 101 RGLG-HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 399 SSNKLAGSIPDDLCR-LHRLDTLILDGNEFSESIPTCLGNLTSL 441
N++ S+P+ R LH LD L+L N + P +L L
Sbjct: 160 HGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRL 202
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 99/267 (37%), Gaps = 54/267 (20%)
Query: 189 AIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAV 248
A+P I S Q+I L N++ + RN LWL SN L GI + + +
Sbjct: 24 AVPTGIP--ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL 81
Query: 249 KEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308
+++DL +N+ L +++ +F
Sbjct: 82 EQLDLSDNA--------------------------------------QLRVVDP--TTFR 101
Query: 309 GFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTN 368
G +G+L TL L L + P L+ +++ LY+ + ++ +L N
Sbjct: 102 G-----LGHLHTLH--LDRCGLQELGPGLFRGLA-ALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 369 FTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFS 428
T L L GN + F L +L L L N +A P L RL TL L N S
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 429 ESIPTCLGNLTSLEGSLLN----VADC 451
L L SL+ LN V DC
Sbjct: 214 MLPAEVLVPLRSLQYLRLNDNPWVCDC 240
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 28/197 (14%)
Query: 246 SAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLN 305
+ K++DL +N LS +LPS+ L + L L N+ T+P+ I
Sbjct: 37 ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK------------ 82
Query: 306 SFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISN 365
++ NL TL +++N L LP + + +++ L + + P+V +
Sbjct: 83 --------ELKNLETLW--VTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 366 LTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGN 425
LT T L LG NEL FD+L +L+ L L +N+L +L L TL LD N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 426 EFSESIPTCLGNLTSLE 442
+ + +P G SLE
Sbjct: 192 QL-KRVPE--GAFDSLE 205
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 24/178 (13%)
Query: 197 FTSLQKISLIY---NKLHGEIPLEV-GNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEID 252
F L K+ L+Y NKL +P + L+N +TLW+ N L + + + E+
Sbjct: 57 FHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 253 LFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIP 312
L N L +LP R +L + YL L N ++L L + N +P
Sbjct: 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VP 173
Query: 313 ----NKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYI-------FNCSISGNI 359
+K+ L+TL+ L NN L + + S+E+L + ++C+ +G I
Sbjct: 174 EGAFDKLTELKTLK--LDNNQLKRVPEGAFD----SLEKLKMLQLQENPWDCTCNGII 225
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 10/167 (5%)
Query: 270 LPNIDYLGLAINRFSGTIPSFITNASNLTILEM---GLNSFSGFIPNKIGNLRTLQTALS 326
LPN+ YL L N+ S + +NLT L + L S + +K+ NL+ L L
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL--VLV 117
Query: 327 NNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVT 386
N L LP + + ++ L + + + V LTN T L L N+L
Sbjct: 118 ENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 387 FDRLQNLQGLFLSSNKLAGSIPDDLC-RLHRLDTLILDGNEFSESIP 432
FD+L L+ L L N+L S+PD + RL L + L N + + P
Sbjct: 177 FDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 242 IFNK-SAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTIL 300
+F+K + +KE+ L N L +LP L N+ YL LA N+ +NLT L
Sbjct: 104 VFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 301 EMGLNSFSGF---IPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYI----FNC 353
++ N + +K+ L+ L+ L N L + P + + S++ +++ ++C
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLR--LYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDC 219
Query: 354 SISG 357
+ G
Sbjct: 220 TCPG 223
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 33/217 (15%)
Query: 216 LEVG---NLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPN 272
+EVG L + +TL L N L + S ++E+ L NN + ++PS +P+
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPS 132
Query: 273 IDYLGLA-INRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLD 331
+ L L + R + NL L +G+ + IPN +R + LS N LD
Sbjct: 133 LRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IPNLTALVRLEELELSGNRLD 191
Query: 332 GILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQ 391
I P S L+ S+ +L++ + ++ + N FD L+
Sbjct: 192 LIRPGSFQGLT-SLRKLWLMHAQVA----TIERN--------------------AFDDLK 226
Query: 392 NLQGLFLSSNKLAGSIPDDL-CRLHRLDTLILDGNEF 427
+L+ L LS N L S+P DL LHRL+ + L+ N +
Sbjct: 227 SLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHNPW 262
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 30/205 (14%)
Query: 225 DTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLA-INRF 283
+TL L N L + S ++E+ L NN + +PS +P++ L L + R
Sbjct: 86 NTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRL 144
Query: 284 SGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSI 343
+ NL L +G+ + IPN +R + LS N LD I P S L+
Sbjct: 145 EYISEAAFEGLVNLRYLNLGMCNLKD-IPNLTALVRLEELELSGNRLDLIRPGSFQGLT- 202
Query: 344 SMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKL 403
S+ +L++ + ++ + N FD L++L+ L LS N L
Sbjct: 203 SLRKLWLMHAQVA----TIERN--------------------AFDDLKSLEELNLSHNNL 238
Query: 404 AGSIPDDL-CRLHRLDTLILDGNEF 427
S+P DL LHRL+ + L+ N +
Sbjct: 239 M-SLPHDLFTPLHRLERVHLNHNPW 262
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 69 IPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLS 114
+P ++ NLS+L LDLS N+L+ +P+ + + LK+ YF DN ++
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 12/214 (5%)
Query: 246 SAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMG-- 303
+A + I L N +S ++P+ + A N+ L L N + + T + L L++
Sbjct: 31 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 89
Query: 304 --LNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQ 361
L S + +G L TL L L + P L+ +++ LY+ + ++
Sbjct: 90 AQLRSVDPATFHGLGRLHTLH--LDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDD 146
Query: 362 VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLI 421
+L N T L L GN ++ F L +L L L N++A P L RL TL
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 422 LDGNEFSESIPTCLGNLTSLEGSLLN----VADC 451
L N S L L +L+ LN V DC
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 240
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 12/214 (5%)
Query: 246 SAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMG-- 303
+A + I L N +S ++P+ + A N+ L L N + + T + L L++
Sbjct: 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 304 --LNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQ 361
L S + +G L TL L L + P L+ +++ LY+ + ++
Sbjct: 91 AQLRSVDPATFHGLGRLHTLH--LDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDD 147
Query: 362 VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLI 421
+L N T L L GN ++ F L +L L L N++A P L RL TL
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 422 LDGNEFSESIPTCLGNLTSLEGSLLN----VADC 451
L N S L L +L+ LN V DC
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 76/188 (40%), Gaps = 36/188 (19%)
Query: 270 LPNIDYLGLAINRFSGTIPSFITNASNLTILEM---GLNSFSGFIPNKIGNLRTLQTALS 326
LPN+ YL L N+ S + +NLT L + L S + +K+ NL+ L L
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL--VLV 117
Query: 327 NNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVT 386
N L LP V LTN T L L N+L
Sbjct: 118 ENQLQS-LPDG------------------------VFDKLTNLTYLYLYHNQLQSLPKGV 152
Query: 387 FDRLQNLQGLFLSSNKLAGSIPDDLC-RLHRLDTLILDGNEFSESIPTCLGNLTSLEGSL 445
FD+L NL L L +N+L S+P+ + +L +L L L+ N+ LTSL
Sbjct: 153 FDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIW 211
Query: 446 L--NVADC 451
L N DC
Sbjct: 212 LLNNPWDC 219
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 268 LALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSF-SGFIPNKIGNLRTLQTALS 326
L+L N+ YL ++ S+L +L+M NSF F+P+ LR L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL----- 472
Query: 327 NNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVT 386
+ +LS C + P ++L++ VL + N+L
Sbjct: 473 ----------TFLDLS---------QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 387 FDRLQNLQGLFLSSNKLAGSIP 408
FDRL +LQ ++L +N S P
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCP 535
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 344 SMERLYIFNCSISGN-IPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNK 402
S+E L + S N +P + + L N T L L +L F+ L +LQ L ++SN+
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 403 LAGSIPDDLC-RLHRLDTLILDGNEFSESIP 432
L S+PD + RL L + L N + S P
Sbjct: 506 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 100/240 (41%), Gaps = 33/240 (13%)
Query: 193 EIGNFTSLQKISLIYNKLHGEIPLEVG---NLRNQDTLWLGSNNLVGIVLSTIFNKSAVK 249
++ +F L+ + ++ + +E+G L N +TL L N L I S +K
Sbjct: 80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139
Query: 250 EIDLFNNSLSGNLPSRTDLALPNIDYLGLA-INRFSGTIPSFITNASNLTILEMGLNSFS 308
E+ L NN + ++PS +P++ L L + R S SNL L + + +
Sbjct: 140 ELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
Query: 309 GFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTN 368
IPN ++ + LS N L I P S L + +++L++ I QVI
Sbjct: 199 E-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQI-----QVIER--- 248
Query: 369 FTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDL-CRLHRLDTLILDGNEF 427
FD LQ+L + L+ N L +P DL LH L+ + L N +
Sbjct: 249 ----------------NAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 334 LPSSIGNLSISMERLYIFNCSISGNIPQ-VISNLTNFTVLQLGGNELTGPVLVTFDRLQN 392
+PSS L + +L ++P V LT T L L N++ FD+L
Sbjct: 26 IPSSATRLELESNKLQ--------SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 393 LQGLFLSSNKLAGSIPDDLC-RLHRLDTLILDGNEFSESIPTCL-GNLTSLEGSLL--NV 448
L L+L NKL S+P+ + +L +L L LD N+ +S+P + LTSL+ L N
Sbjct: 78 LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 135
Query: 449 ADC 451
DC
Sbjct: 136 WDC 138
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 362 VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLC-RLHRLDTL 420
V LT T+L L N+L FD+L L+ L L +N+L S+PD + RL L +
Sbjct: 71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKI 129
Query: 421 ILDGNEFSESIP 432
L N + S P
Sbjct: 130 WLHTNPWDCSCP 141
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 344 SMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKL 403
+ + LY+++ I+ P V LT T L L N+LT FD+L L L L+ N+L
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 404 AGSIP 408
SIP
Sbjct: 91 K-SIP 94
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 344 SMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKL 403
+ + LY+++ I+ P V LT T L L N+LT FD+L L L L+ N+L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 404 AGSIP 408
SIP
Sbjct: 91 K-SIP 94
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 344 SMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKL 403
+ + LY+++ I+ P V LT T L L N+LT FD+L L L L+ N+L
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Query: 404 AGSIP 408
SIP
Sbjct: 99 K-SIP 102
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 334 LPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNL 393
LP+ + + S+ +LY+ + V + LT+ T L L N+L FD+L L
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102
Query: 394 QGLFLSSNKLAGSIPDDLC-RLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLL--NVAD 450
+ L L++N+L S+PD + +L +L L L N+ LTSL+ L N D
Sbjct: 103 KELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
Query: 451 C 451
C
Sbjct: 162 C 162
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 362 VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLC-RLHRLDTL 420
V LT L L N+L FD+L L+ L L N+L S+PD + RL L +
Sbjct: 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYI 153
Query: 421 ILDGNEFSESIP 432
L N + + P
Sbjct: 154 WLHDNPWDCTCP 165
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 334 LPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNL 393
L S + +RL++ N I+ P V +L N L N+LT FD+L L
Sbjct: 24 LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83
Query: 394 QGLFLSSNKLAGSIP 408
L L+ N L SIP
Sbjct: 84 TQLDLNDNHLK-SIP 97
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 354 SISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIP----D 409
S+ IP T+ L L N++T FD L NLQ L+ +SNKL +IP D
Sbjct: 26 SVPAGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFD 78
Query: 410 DLCRLHRLDTLILDGNEFSESIPT-CLGNLTSLEGSLL--NVADC 451
L +L +LD L+ N +SIP NL SL L N DC
Sbjct: 79 KLTQLTQLD---LNDNHL-KSIPRGAFDNLKSLTHIYLYNNPWDC 119
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 325 LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQ-VISNLTNFTVLQLGGNELTGPV 383
L+NN + + P +L +++++LY FN + IP V LT T L L N L
Sbjct: 40 LNNNQITKLEPGVFDHL-VNLQQLY-FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 384 LVTFDRLQNLQGLFLSSNKLAGSIPD 409
FD L++L ++L +N D
Sbjct: 98 RGAFDNLKSLTHIYLYNNPWDCECRD 123
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 330 LDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDR 389
+DG LP +G L +S +L ++P + L TVL + N LT L
Sbjct: 72 VDGTLPV-LGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 390 LQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447
L LQ L+L N+L P L +L+ L L N+ +E L L +L+ LL
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQ 180
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 330 LDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDR 389
+DG LP +G L +S +L ++P + L TVL + N LT L
Sbjct: 72 VDGTLPV-LGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 390 LQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447
L LQ L+L N+L P L +L+ L L N+ +E L L +L+ LL
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQ 180
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 334 LPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNL 393
L S + + + L+++ I+ P V +LT T L L N+LT + FD+L L
Sbjct: 31 LASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKL 90
Query: 394 QGLFLSSNKLAGSIP 408
L L N+L SIP
Sbjct: 91 THLALHINQLK-SIP 104
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 270 LPNIDYLGLAINRFS--GTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSN 327
L ++ L L +N+ I T +L L++ NS S K G+ ++ LS
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS--YDEKKGDCSWTKSLLSL 404
Query: 328 NPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTF 387
N IL +I ++ + + +IP+ + L L + N+L F
Sbjct: 405 NMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
Query: 388 DRLQNLQGLFLSSNKLAGSIP 408
DRL +LQ ++L +N S P
Sbjct: 465 DRLTSLQKIWLHTNPWDCSCP 485
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 347 RLYIFNCSISGNIPQVISNLT-NFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAG 405
L + CS G + +V +L + +L L N++T F L+NL L L +NK++
Sbjct: 32 HLRVVQCSDLG-LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 406 SIPDDLCRLHRLDTLILDGN---EFSESIPTCLGNLTSLEGSLLNV 448
P L +L+ L L N E E +P L L E + V
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 136
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 347 RLYIFNCSISGNIPQVISNLT-NFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAG 405
L + CS G + +V +L + +L L N++T F L+NL L L +NK++
Sbjct: 32 HLRVVQCSDLG-LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 406 SIPDDLCRLHRLDTLILDGN---EFSESIPTCLGNLTSLEGSLLNV 448
P L +L+ L L N E E +P L L E + V
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 136
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 330 LDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDR 389
+DG LP +G L +S +L ++P + L TVL + N LT L
Sbjct: 72 VDGTLPV-LGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 390 LQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447
L LQ L+L N+L P L +L+ L L N+ +E L L +L+ LL
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQ 180
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 330 LDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDR 389
+DG LP +G L +S +L ++P + L TVL + N LT L
Sbjct: 72 VDGTLPV-LGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 390 LQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447
L LQ L+L N+L P L +L+ L L N+ +E L L +L+ LL
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQ 180
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 330 LDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDR 389
+DG LP +G L +S +L ++P + L TVL + N LT L
Sbjct: 72 VDGTLPV-LGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 390 LQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447
L LQ L+L N+L P L +L+ L L N+ +E L L +L+ LL
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQ 180
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 341 LSISMERLYIFNCSISG--NIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFL 398
+ I E +NC G IP + N T F L+ N L TF RL NL L L
Sbjct: 4 MCIEKEANKTYNCENLGLSEIPDTLPNTTEF--LEFSFNFLPTIHNRTFSRLMNLTFLDL 61
Query: 399 SSNKLAGSIPDDLCRLHRLDTLILDGN 425
+ ++ D H+L TL+L GN
Sbjct: 62 TRCQINWIHEDTFQSHHQLSTLVLTGN 88
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 218 VGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDL 268
V NL N ++L+LGSN++ I F +K +D NN++ + SR D+
Sbjct: 122 VHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAI--HYISREDM 170
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Query: 229 LGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIP 288
LG N + + + ++E++L N +S P + L N+ LGL NR
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPL 97
Query: 289 SFITNASNLTILEMGLNSFS---GFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISM 345
T SNLT L++ N ++ + NL++L+ + +N L I + L+ S+
Sbjct: 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE--VGDNDLVYISHRAFSGLN-SL 154
Query: 346 ERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLS 399
E+L + C+++ + +S+L VL+L + +F RL L+ L +S
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 9/142 (6%)
Query: 293 NASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFN 352
N ++L+I L + + LR L LS NP+ I S + L + ++ + +
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLN--LSYNPISTIEGSMLHEL-LRLQEIQLVG 281
Query: 353 CSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLC 412
++ P L VL + GN+LT F + NL+ L L SN LA C
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD-----C 336
Query: 413 RLHRLDTLILDGNEFSESIPTC 434
RL + N F+ PTC
Sbjct: 337 RLLWVFRRRWRLN-FNRQQPTC 357
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 293 NASNLTILEMGLNSFSGFIPNKIGNLRT--LQTALSNNPLDG----ILPSSIGNLSISME 346
N S+L L++ LNS + ++ L LS+N L G LP + L +
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460
Query: 347 RLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGS 406
R+ +IP+ +++L L + N+L FDRL +LQ ++L N +
Sbjct: 461 RIM--------SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512
Query: 407 IP 408
P
Sbjct: 513 CP 514
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 198 TSLQKISLIYNKLHGEIPLEVGNL-RNQDTLWLGSNNL 234
T+ Q I+L+Y+K HG+ P + N R+Q LG N L
Sbjct: 397 TAAQLIALVYDKHHGDTPSKYANWARSQMDYLLGKNPL 434
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 330 LDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDR 389
+DG LP +G L +S +L ++P + L TVL + N LT L
Sbjct: 73 VDGTLPV-LGTLDLSHNQLQ--------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 123
Query: 390 LQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447
L LQ L+L N+L P L +L+ L L N +E L L +L+ LL
Sbjct: 124 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 181
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 30/144 (20%)
Query: 324 ALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLT----NFTVLQLGGNEL 379
ALS N ++ I SS+ ME L I S+ N+ + I NL L + N++
Sbjct: 55 ALSTNNIEKI--SSLS----GMENLRIL--SLGRNLIKKIENLDAVADTLEELWISYNQI 106
Query: 380 TGPVLVTFDRLQNLQGLFLSSNKLA--GSIPDDLCRLHRLDTLILDGN------------ 425
L ++L NL+ L++S+NK+ G I D L L +L+ L+L GN
Sbjct: 107 AS--LSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNAT 163
Query: 426 -EFSESIPTCLGNLTSLEGSLLNV 448
E+ + L NL L+G ++V
Sbjct: 164 SEYRIEVVKRLPNLKKLDGMPVDV 187
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 30/144 (20%)
Query: 324 ALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLT----NFTVLQLGGNEL 379
ALS N ++ I SS+ ME L I S+ N+ + I NL L + N++
Sbjct: 54 ALSTNNIEKI--SSLS----GMENLRIL--SLGRNLIKKIENLDAVADTLEELWISYNQI 105
Query: 380 TGPVLVTFDRLQNLQGLFLSSNKLA--GSIPDDLCRLHRLDTLILDGN------------ 425
L ++L NL+ L++S+NK+ G I D L L +L+ L+L GN
Sbjct: 106 AS--LSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNAT 162
Query: 426 -EFSESIPTCLGNLTSLEGSLLNV 448
E+ + L NL L+G ++V
Sbjct: 163 SEYRIEVVKRLPNLKKLDGMPVDV 186
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 330 LDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDR 389
+DG LP +G L +S +L ++P + L TVL + N LT L
Sbjct: 72 VDGTLPV-LGTLDLSHNQLQ--------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 390 LQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447
L LQ L+L N+L P L +L+ L L N +E L L +L+ LL
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 306 SFSGFIP-NKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVIS 364
S + +P ++ L + L+ +DG LP +G L +S +L ++P +
Sbjct: 47 SLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQLQ--------SLPLLGQ 97
Query: 365 NLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDG 424
L TVL + N LT L L LQ L+L N+L P L +L+ L L
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 425 NEFSESIPTCLGNLTSLEGSLLN 447
N +E L L +L+ LL
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQ 180
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 298 TILEMGLN-----SFSGFIP-NKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIF 351
TIL + N S + +P ++ L + L+ +DG LP +G L +S +L
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQL--- 89
Query: 352 NCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDL 411
++P + L TVL + N LT L L LQ L+L N+L P L
Sbjct: 90 -----QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 412 CRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447
+L+ L L N +E L L +L+ LL
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 306 SFSGFIP-NKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVIS 364
S + +P ++ L + L+ +DG LP +G L +S +L ++P +
Sbjct: 47 SLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQLQ--------SLPLLGQ 97
Query: 365 NLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDG 424
L TVL + N LT L L LQ L+L N+L P L +L+ L L
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 425 NEFSESIPTCLGNLTSLEGSLLN 447
N +E L L +L+ LL
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQ 180
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 362 VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLI 421
+ L + L+L N+LTG F+ ++Q L L NK+ LH+L TL
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 422 LDGNEFSESIPTCLGNLTSLEGSLLNVADCP 452
L N+ S +P +L SL + LN+A P
Sbjct: 109 LYDNQISCVMPGSFEHLNSL--TSLNLASNP 137
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIF-TMHTLKFLYFSDNQLSG 115
L + L G P S + L L +NK+ +I + +F +H LK L DNQ+S
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC 116
Query: 116 SLSSFTFNMSSMLVSDLSTNRF 137
+ +++S+ +L++N F
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPF 138
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 38/249 (15%)
Query: 214 IPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDL-ALPN 272
IPL N + ++L+LGSN++ I L F +K +D NN++ + S+ D+ +L
Sbjct: 123 IPLH--NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQ 178
Query: 273 IDYLGLAI--NRFSGTIPSFITNA----------SNLTILEMGLNSFSGFIPNKIGNLRT 320
L L + N +G P +A NL ++ GL + S +G
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN-STIQSLWLGTFED 237
Query: 321 LQTA-LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNEL 379
+ +S +G+ S+ SI++++ Y FN IS N S L + +EL
Sbjct: 238 MDDEDISPAVFEGLCEMSVE--SINLQKHYFFN--ISSNTFHCFSGLQELDLTATHLSEL 293
Query: 380 TGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHR-----LDTLILDGNEFSESIPT- 433
++ L L+ L LS+NK ++LC++ L L + GN + T
Sbjct: 294 PSGLV----GLSTLKKLVLSANKF-----ENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
Query: 434 CLGNLTSLE 442
CL NL +L
Sbjct: 345 CLENLENLR 353
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 343 ISMERLYIFNCSISG--NIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSS 400
I E +NC G IP + N T L+ N L TF RL NL L L+
Sbjct: 9 IEKEVNKTYNCENLGLNEIPGTLPNSTE--CLEFSFNVLPTIQNTTFSRLINLTFLDLTR 66
Query: 401 NKLAGSIPDDLCRLHRLDTLILDGN 425
++ D HRLDTL+L N
Sbjct: 67 CQIYWIHEDTFQSQHRLDTLVLTAN 91
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 18/143 (12%)
Query: 301 EMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIP 360
+G+ S G + NL Q SNN L I P + NL+ + + + N I+ P
Sbjct: 50 RLGIKSIDGV--EYLNNLT--QINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP 102
Query: 361 QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAG-SIPDDLCRLHRLDT 419
++NLTN T L L N++T + L NL L LSSN ++ S L L +L+
Sbjct: 103 --LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 158
Query: 420 LILDGNEFSESIPTCLGNLTSLE 442
GN+ ++ P L NLT+LE
Sbjct: 159 ----GNQVTDLKP--LANLTTLE 175
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 18/143 (12%)
Query: 301 EMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIP 360
+G+ S G + NL Q SNN L I P + NL+ + + + N I+ P
Sbjct: 50 RLGIKSIDGV--EYLNNLT--QINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP 102
Query: 361 QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAG-SIPDDLCRLHRLDT 419
++NLTN T L L N++T + L NL L LSSN ++ S L L +L+
Sbjct: 103 --LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 158
Query: 420 LILDGNEFSESIPTCLGNLTSLE 442
GN+ ++ P L NLT+LE
Sbjct: 159 ----GNQVTDLKP--LANLTTLE 175
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 301 EMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIP 360
+G+ S G + NL Q SNN L I P + NL+ + + + N I+ P
Sbjct: 50 RLGIKSIDGV--EYLNNLT--QINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP 102
Query: 361 QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTL 420
++NLTN T L L N++T + L NL L LSSN ++ L L L L
Sbjct: 103 --LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQL 156
Query: 421 ILDGNEFSESIPTCLGNLTSLE 442
N+ ++ P L NLT+LE
Sbjct: 157 SFSSNQVTDLKP--LANLTTLE 176
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 363 ISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLIL 422
+ NLT T L+L GN L + LQ+++ L L+S ++ P L L L L L
Sbjct: 81 LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 136
Query: 423 DGNEFSESIPTCLGNLTSLE 442
D N+ + P L LT+L+
Sbjct: 137 DLNQITNISP--LAGLTNLQ 154
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 301 EMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIP 360
+G+ S G + NL Q SNN L I P + NL+ + + + N I+ P
Sbjct: 50 RLGIKSIDGV--EYLNNLT--QINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP 102
Query: 361 QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTL 420
++NLTN T L L N++T + L NL L LSSN ++ L L L L
Sbjct: 103 --LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQL 156
Query: 421 ILDGNEFSESIPTCLGNLTSLE 442
N+ ++ P L NLT+LE
Sbjct: 157 SFSSNQVTDLKP--LANLTTLE 176
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 20/144 (13%)
Query: 301 EMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIP 360
+G+ S G + NL Q SNN L I P + NL+ + + + N I+ P
Sbjct: 55 RLGIKSIDGV--EYLNNLT--QINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP 107
Query: 361 QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTL 420
++NLTN T L L N++T + L NL L LSSN ++ D+ L L +L
Sbjct: 108 --LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-----DISALSGLTSL 158
Query: 421 --ILDGNEFSESIPTCLGNLTSLE 442
+ GN+ ++ P L NLT+LE
Sbjct: 159 QQLSFGNQVTDLKP--LANLTTLE 180
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 20/144 (13%)
Query: 301 EMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIP 360
+G+ S G + NL Q SNN L I P + NL+ + + + N I+ P
Sbjct: 54 RLGIKSIDGV--EYLNNLT--QINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP 106
Query: 361 QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTL 420
++NLTN T L L N++T + L NL L LSSN ++ D+ L L +L
Sbjct: 107 --LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-----DISALSGLTSL 157
Query: 421 --ILDGNEFSESIPTCLGNLTSLE 442
+ GN+ ++ P L NLT+LE
Sbjct: 158 QQLSFGNQVTDLKP--LANLTTLE 179
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 301 EMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIP 360
+G+ S G + NL Q SNN L I P + NL+ + + + N I+ P
Sbjct: 50 RLGIKSIDGV--EYLNNLT--QINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP 102
Query: 361 QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTL 420
++NLTN T L L N++T + L NL L LSSN ++ L L L L
Sbjct: 103 --LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQL 156
Query: 421 ILDGNEFSESIPTCLGNLTSLE 442
N+ ++ P L NLT+LE
Sbjct: 157 NFSSNQVTDLKP--LANLTTLE 176
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 361 QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLC-RLHRLDT 419
+ +L N ++ G N+L F ++ L+ L L+SN+L S+PD + RL L
Sbjct: 164 HLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTSLQK 222
Query: 420 LILDGNEFSESIP 432
+ L N + S P
Sbjct: 223 IWLHTNPWDCSCP 235
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 359 IPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLD 418
+P+ +SN + T++ L N ++ +F + L L LS N+L P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 419 TLILDGNEFS 428
L L GN+ S
Sbjct: 106 LLSLHGNDIS 115
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 73 LGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDL 132
L N LV +DLS N+L + M L+ LY S+N+L L+ + + ++ V DL
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 302
Query: 133 STNRF 137
S N
Sbjct: 303 SHNHL 307
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 363 ISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLIL 422
+ NLT T L+L GN L + LQ+++ L L+S ++ P L L L L L
Sbjct: 87 LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 142
Query: 423 DGNEFSESIPTCLGNLTSLE 442
D N+ + P L LT+L+
Sbjct: 143 DLNQITNISP--LAGLTNLQ 160
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 73 LGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDL 132
L N LV +DLS N+L + M L+ LY S+N+L L+ + + ++ V DL
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308
Query: 133 STN 135
S N
Sbjct: 309 SHN 311
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 45/166 (27%)
Query: 311 IPNKIGNLRTLQTALSNNPLDGILPSSIGNLSIS-------------MERLYIFNCSISG 357
+P+++ L L++ P+ LPS + LS+S + +L+ +N ++
Sbjct: 159 LPSELCKLWAYNNQLTSLPM---LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT- 214
Query: 358 NIPQVISNLTNFTVLQLGGNELTG-PVLVTFDRLQNLQGLFLSSNKLAG----------- 405
++P + S L V GN LT PVL + L+ L +S N+L
Sbjct: 215 SLPALPSGLKELIV---SGNRLTSLPVLPS-----ELKELMVSGNRLTSLPMLPSGLLSL 266
Query: 406 --------SIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEG 443
+P+ L L T+ L+GN SE L +TS G
Sbjct: 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,282,802
Number of Sequences: 62578
Number of extensions: 428642
Number of successful extensions: 1892
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 348
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)