Query 043765
Match_columns 452
No_of_seqs 290 out of 4265
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-49 2.9E-54 425.5 31.5 423 20-449 23-462 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.2E-46 4.9E-51 400.7 26.1 391 57-450 168-582 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.5E-40 9.8E-45 304.0 7.2 390 57-451 56-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 3E-39 6.4E-44 298.6 3.0 387 28-424 54-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.8E-37 3.9E-42 274.9 -8.2 377 57-450 72-539 (565)
6 KOG0444 Cytoskeletal regulator 100.0 1.3E-35 2.9E-40 276.7 -6.2 356 57-447 11-370 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 1E-33 2.2E-38 251.2 -13.6 384 50-450 42-516 (565)
8 KOG0444 Cytoskeletal regulator 100.0 1.4E-31 3E-36 250.0 -4.1 336 57-404 36-375 (1255)
9 KOG0618 Serine/threonine phosp 99.9 1.4E-29 3E-34 246.5 -0.7 375 57-449 49-486 (1081)
10 PLN03210 Resistant to P. syrin 99.9 9.6E-26 2.1E-30 242.4 24.6 340 69-426 550-904 (1153)
11 KOG4237 Extracellular matrix p 99.9 5E-27 1.1E-31 208.4 -2.6 397 30-448 50-497 (498)
12 PLN03210 Resistant to P. syrin 99.9 2.9E-23 6.2E-28 223.4 24.7 320 67-403 578-905 (1153)
13 KOG0618 Serine/threonine phosp 99.9 7.1E-27 1.5E-31 227.8 -2.8 368 57-446 25-437 (1081)
14 PRK15387 E3 ubiquitin-protein 99.9 8.8E-22 1.9E-26 197.7 16.7 266 101-436 201-466 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 2.1E-21 4.6E-26 194.9 17.7 263 55-387 203-465 (788)
16 KOG4237 Extracellular matrix p 99.9 3.7E-24 8E-29 190.3 -3.9 294 56-379 49-358 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 4.1E-20 8.9E-25 186.8 11.2 15 24-38 61-75 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.5E-19 1.8E-23 177.3 13.3 245 127-428 180-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 4.5E-20 9.8E-25 173.2 0.3 82 105-187 2-94 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 5.7E-20 1.2E-24 172.5 -0.4 106 81-187 2-121 (319)
21 KOG0617 Ras suppressor protein 99.7 6E-20 1.3E-24 145.4 -6.0 162 73-240 29-191 (264)
22 KOG0617 Ras suppressor protein 99.7 4E-19 8.7E-24 140.8 -5.1 159 57-222 37-196 (264)
23 PLN03150 hypothetical protein; 99.3 2.3E-11 4.9E-16 123.1 13.2 159 21-187 367-528 (623)
24 KOG1909 Ran GTPase-activating 99.3 3.6E-13 7.8E-18 119.2 -1.9 240 57-308 34-311 (382)
25 COG4886 Leucine-rich repeat (L 99.3 8.1E-12 1.8E-16 120.7 7.0 198 81-289 97-295 (394)
26 KOG0532 Leucine-rich repeat (L 99.2 3.8E-13 8.3E-18 126.1 -3.6 193 57-259 54-247 (722)
27 KOG4658 Apoptotic ATPase [Sign 99.2 2.1E-11 4.6E-16 126.0 8.1 329 76-433 522-865 (889)
28 KOG1909 Ran GTPase-activating 99.2 6.5E-13 1.4E-17 117.6 -2.6 248 72-330 25-310 (382)
29 COG4886 Leucine-rich repeat (L 99.2 2.6E-11 5.6E-16 117.2 7.0 202 104-316 96-298 (394)
30 PF14580 LRR_9: Leucine-rich r 99.2 3E-11 6.6E-16 100.3 5.1 128 73-206 15-148 (175)
31 KOG1259 Nischarin, modulator o 99.1 1.9E-11 4.1E-16 106.2 3.2 225 147-405 179-413 (490)
32 KOG3207 Beta-tubulin folding c 99.1 5.2E-12 1.1E-16 115.0 -0.8 184 75-258 119-313 (505)
33 KOG0532 Leucine-rich repeat (L 99.1 7.6E-13 1.6E-17 124.1 -6.8 172 57-238 79-250 (722)
34 PLN03150 hypothetical protein; 99.1 3.4E-10 7.5E-15 114.6 10.0 108 102-210 419-527 (623)
35 KOG3207 Beta-tubulin folding c 99.1 1.2E-11 2.7E-16 112.6 -0.5 64 245-308 196-259 (505)
36 KOG4658 Apoptotic ATPase [Sign 99.1 1.7E-10 3.6E-15 119.5 6.2 126 101-230 523-650 (889)
37 PF14580 LRR_9: Leucine-rich r 99.0 2.4E-10 5.1E-15 95.0 3.6 105 150-259 19-126 (175)
38 KOG1259 Nischarin, modulator o 99.0 4.8E-11 1E-15 103.7 -0.6 130 101-237 284-414 (490)
39 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 2.9E-14 74.3 3.0 59 344-402 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 1.5E-09 3.2E-14 74.2 2.9 60 77-136 1-60 (61)
41 KOG0531 Protein phosphatase 1, 98.7 8.1E-10 1.8E-14 107.0 -2.3 196 99-308 70-268 (414)
42 KOG0531 Protein phosphatase 1, 98.7 1.1E-09 2.4E-14 106.1 -3.2 217 75-307 70-289 (414)
43 KOG2120 SCF ubiquitin ligase, 98.5 2.5E-09 5.4E-14 93.1 -6.1 182 223-429 186-377 (419)
44 KOG2982 Uncharacterized conser 98.5 2.8E-08 6.1E-13 86.7 0.2 236 67-303 35-287 (418)
45 KOG2982 Uncharacterized conser 98.4 5.6E-08 1.2E-12 84.9 0.5 37 368-404 225-262 (418)
46 KOG1859 Leucine-rich repeat pr 98.4 6.2E-09 1.3E-13 101.0 -6.6 158 94-258 102-291 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.4 5.4E-08 1.2E-12 83.8 -0.5 239 57-308 34-316 (388)
48 COG5238 RNA1 Ran GTPase-activa 98.4 5.3E-08 1.1E-12 83.9 -0.6 217 74-309 27-286 (388)
49 KOG2120 SCF ubiquitin ligase, 98.3 8.9E-09 1.9E-13 89.7 -6.2 176 127-305 187-373 (419)
50 KOG1859 Leucine-rich repeat pr 98.1 2.1E-07 4.6E-12 90.7 -2.4 106 337-448 182-288 (1096)
51 KOG4579 Leucine-rich repeat (L 98.0 2.7E-07 5.8E-12 71.3 -3.9 102 57-163 31-136 (177)
52 KOG1644 U2-associated snRNP A' 98.0 1.6E-05 3.4E-10 66.0 6.0 83 102-187 43-126 (233)
53 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 50.4 3.3 36 78-114 2-37 (44)
54 KOG4579 Leucine-rich repeat (L 97.9 9.5E-07 2.1E-11 68.4 -2.3 87 57-146 57-143 (177)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 49.8 3.2 40 101-142 1-40 (44)
56 KOG3665 ZYG-1-like serine/thre 97.8 3.3E-06 7.2E-11 85.8 -0.4 152 125-278 122-282 (699)
57 PF13306 LRR_5: Leucine rich r 97.8 6.4E-05 1.4E-09 60.0 6.6 107 71-183 6-112 (129)
58 KOG1644 U2-associated snRNP A' 97.8 5.6E-05 1.2E-09 62.8 5.8 104 150-255 42-149 (233)
59 PF13306 LRR_5: Leucine rich r 97.7 0.00011 2.5E-09 58.5 7.4 33 149-182 34-66 (129)
60 PRK15386 type III secretion pr 97.6 0.00024 5.2E-09 66.9 7.7 49 57-111 56-104 (426)
61 KOG4341 F-box protein containi 97.5 2.4E-06 5.1E-11 78.4 -5.6 35 78-112 139-175 (483)
62 KOG3665 ZYG-1-like serine/thre 97.5 4.1E-05 8.9E-10 78.0 2.0 151 101-253 122-282 (699)
63 PRK15386 type III secretion pr 97.4 0.00094 2E-08 63.0 9.9 134 73-232 48-187 (426)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00021 4.5E-09 62.1 3.1 99 344-446 44-150 (260)
65 KOG2123 Uncharacterized conser 97.1 5.3E-05 1.1E-09 66.1 -2.1 98 344-445 20-123 (388)
66 KOG4341 F-box protein containi 96.9 2.9E-05 6.2E-10 71.5 -5.5 274 151-446 139-433 (483)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00067 1.5E-08 58.9 2.8 84 174-259 43-129 (260)
68 KOG2123 Uncharacterized conser 96.8 5.7E-05 1.2E-09 65.9 -4.4 62 75-138 39-101 (388)
69 KOG1947 Leucine rich repeat pr 96.6 0.00015 3.3E-09 72.1 -3.6 130 173-302 187-328 (482)
70 KOG1947 Leucine rich repeat pr 96.0 0.0017 3.8E-08 64.5 0.1 112 75-186 186-307 (482)
71 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.4E-07 30.4 0.9 11 394-404 3-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.8 0.0097 2.1E-07 30.7 0.4 22 416-438 1-22 (22)
73 KOG4308 LRR-containing protein 94.5 0.00033 7.1E-09 68.4 -10.4 86 344-429 205-304 (478)
74 KOG4308 LRR-containing protein 93.4 0.00033 7.1E-09 68.4 -12.6 84 103-186 89-184 (478)
75 KOG3864 Uncharacterized conser 93.1 0.016 3.5E-07 48.6 -1.3 84 344-427 102-188 (221)
76 smart00369 LRR_TYP Leucine-ric 92.8 0.12 2.6E-06 27.8 2.4 21 125-146 2-22 (26)
77 smart00370 LRR Leucine-rich re 92.8 0.12 2.6E-06 27.8 2.4 21 125-146 2-22 (26)
78 KOG0473 Leucine-rich repeat pr 92.2 0.0017 3.6E-08 55.4 -8.2 85 73-161 38-122 (326)
79 KOG3864 Uncharacterized conser 92.1 0.029 6.3E-07 47.1 -1.0 79 368-446 102-183 (221)
80 PF13504 LRR_7: Leucine rich r 91.9 0.11 2.4E-06 24.7 1.3 8 104-111 4-11 (17)
81 PF13516 LRR_6: Leucine Rich r 89.0 0.099 2.2E-06 27.5 -0.3 11 369-379 4-14 (24)
82 smart00370 LRR Leucine-rich re 88.4 0.46 1E-05 25.4 2.1 14 368-381 3-16 (26)
83 smart00369 LRR_TYP Leucine-ric 88.4 0.46 1E-05 25.4 2.1 14 368-381 3-16 (26)
84 KOG0473 Leucine-rich repeat pr 87.1 0.017 3.6E-07 49.6 -6.1 88 96-187 37-124 (326)
85 PF08263 LRRNT_2: Leucine rich 85.3 1.2 2.5E-05 27.4 2.9 28 25-53 2-29 (43)
86 KOG3763 mRNA export factor TAP 78.1 1.6 3.4E-05 42.8 2.4 66 74-139 215-284 (585)
87 smart00365 LRR_SD22 Leucine-ri 72.7 3.5 7.7E-05 22.1 1.9 14 101-114 2-15 (26)
88 smart00368 LRR_RI Leucine rich 70.0 2.6 5.5E-05 23.1 1.0 15 367-381 2-16 (28)
89 KOG4242 Predicted myosin-I-bin 65.4 40 0.00086 32.9 8.3 59 344-402 414-479 (553)
90 smart00364 LRR_BAC Leucine-ric 63.7 5.1 0.00011 21.5 1.3 12 127-138 4-15 (26)
91 smart00367 LRR_CC Leucine-rich 54.2 9.6 0.00021 20.2 1.4 14 414-427 1-14 (26)
92 KOG3763 mRNA export factor TAP 45.0 13 0.00027 36.8 1.6 61 344-405 219-284 (585)
93 KOG4242 Predicted myosin-I-bin 31.1 1.9E+02 0.004 28.5 6.8 17 57-73 169-185 (553)
94 PF07172 GRP: Glycine rich pro 28.9 65 0.0014 23.8 2.8 12 1-12 1-12 (95)
95 TIGR02167 Liste_lipo_26 bacter 24.6 43 0.00092 17.9 0.9 16 435-450 2-17 (26)
96 PF03823 Neurokinin_B: Neuroki 23.9 98 0.0021 20.1 2.5 27 1-27 1-27 (59)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-49 Score=425.54 Aligned_cols=423 Identities=33% Similarity=0.511 Sum_probs=359.1
Q ss_pred hcCCChhhHHHHHHHHHhCcCCCCCccCCCCCCCCce---------------eEEeCCCCccccCCcCCCCCCCCCEEeC
Q 043765 20 ASNNITTDQQVLLALKAHITYDPTNFLAQNWTSNTSF---------------SLNISSFNLQGTIPPQLGNLSSLVTLDL 84 (452)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~---------------~l~l~~~~~~~~~~~~~~~l~~L~~L~l 84 (452)
.+...+.|..+++.||+++ .+|.++... |...+++ .|+++++++++.++..|..+++|+.|++
T Consensus 23 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~-w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~L 100 (968)
T PLN00113 23 FSMLHAEELELLLSFKSSI-NDPLKYLSN-WNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100 (968)
T ss_pred ccCCCHHHHHHHHHHHHhC-CCCcccCCC-CCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEEC
Confidence 3334568899999999999 467776665 7543321 7999999999999999999999999999
Q ss_pred CCCcCCCcCChhhh-CCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCC
Q 043765 85 SQNKLSGDIPSSIF-TMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIH 163 (452)
Q Consensus 85 s~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (452)
++|++.+.+|..+. .+++|++|++++|.+.+.+|. ..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.
T Consensus 101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLV 177 (968)
T ss_pred CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhc-CCCCCEEECccCccc
Confidence 99999988887765 899999999999999877765 46889999999999998888888877 899999999999988
Q ss_pred ccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccccccccccc
Q 043765 164 GKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIF 243 (452)
Q Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 243 (452)
+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+.
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 88888899999999999999999888888899999999999999998888888899999999999999999888888888
Q ss_pred CCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHH
Q 043765 244 NKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQT 323 (452)
Q Consensus 244 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 323 (452)
++++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 999999999999988877877766 7889999999999998888888888999999999999888888888888888777
Q ss_pred h-hcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCc
Q 043765 324 A-LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNK 402 (452)
Q Consensus 324 ~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 402 (452)
+ +..|.+.+.+|..+..+. +|+.|++++|++.+.+|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|+
T Consensus 337 L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred EECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 5 777788888888888777 88888888888888888888778888888888888887778778788888888888888
Q ss_pred ccccChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCCceecccc
Q 043765 403 LAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 403 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 449 (452)
+++.+|..+..++.|+.|++++|.+.+.+|..+..+++|+.|+++.|
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence 88777877888888888888888887777777777777777777654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-46 Score=400.74 Aligned_cols=391 Identities=31% Similarity=0.467 Sum_probs=293.2
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 78888888888888888888888888888888888888888888888888888888887788888888888888888888
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|.
T Consensus 248 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 248 LTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred eccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 87777777766 77888888888877777777777777788888887777777777777777777777777777766777
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhh-----------------------cCCCCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTD-----------------------LALPNI 273 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-----------------------~~~~~L 273 (452)
.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.... ..+++|
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 777777777777777777766666666667777777777666655554443 134445
Q ss_pred cEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchhccceeeccc
Q 043765 274 DYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIFN 352 (452)
Q Consensus 274 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~ 352 (452)
+.|++++|++++..|..+.++++|+.|++++|.+.+.++..+..++.|+.+ +..|.+.+.+|..+. .. +|+.|++++
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~-~L~~L~ls~ 484 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SK-RLENLDLSR 484 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cc-cceEEECcC
Confidence 555555555554445455555555555555555555544444444455443 555555555555443 22 678888888
Q ss_pred ccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCC
Q 043765 353 CSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIP 432 (452)
Q Consensus 353 ~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 432 (452)
|++++..|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 88887788888888888999999998888888888888999999999999998888889999999999999999988889
Q ss_pred ccccCCCCCCceeccccC
Q 043765 433 TCLGNLTSLEGSLLNVAD 450 (452)
Q Consensus 433 ~~~~~~~~L~~L~l~~~~ 450 (452)
..+.++++|++++++.|.
T Consensus 565 ~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 565 KNLGNVESLVQVNISHNH 582 (968)
T ss_pred hhHhcCcccCEEeccCCc
Confidence 888889999998887653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-40 Score=303.99 Aligned_cols=390 Identities=23% Similarity=0.280 Sum_probs=311.5
Q ss_pred eEEeCCCCccccCCcCCCC--CCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 043765 57 SLNISSFNLQGTIPPQLGN--LSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLST 134 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~--l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 134 (452)
.+|++++.+...--..+.. .+.-+.|++++|++...-+..|.++++|+.+++.+|.++ .+|.......+++.|+|.+
T Consensus 56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeec
Confidence 5777777765421111111 134567888888888777777888888888888888887 7777777777888888888
Q ss_pred CCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecC
Q 043765 135 NRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEI 214 (452)
Q Consensus 135 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 214 (452)
|.|+ .+...-.+.++.|+.||++.|.++......|..-.++++|+|++|.++......|..+.+|.+|.++.|+++...
T Consensus 135 N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 135 NLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred cccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 8888 444433334888888888888887554456777778888888888888777778888888888888888888666
Q ss_pred CcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCC
Q 043765 215 PLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNA 294 (452)
Q Consensus 215 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 294 (452)
+..|.++++|+.|++..|++.......|.++++|+.|.+..|.+. .+.+..|..+.++++|+|+.|++...-..|+-++
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhccccccc
Confidence 677888888888888888888776777888888888888888887 6667777788888888888888887777788888
Q ss_pred CCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEE
Q 043765 295 SNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQ 373 (452)
Q Consensus 295 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 373 (452)
+.|+.|++++|.+....++.+..+++|+.+ ++.|.+..--+..+..+. .|+.|+|++|.+.......|.++++|++||
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 888888888888888888888888888876 777777766666777777 999999999999976677888999999999
Q ss_pred ccCCcCCccc---chhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCCceecc---
Q 043765 374 LGGNELTGPV---LVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN--- 447 (452)
Q Consensus 374 l~~n~i~~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~--- 447 (452)
+++|.+...+ ...|..+++|+.|.+.+|++..+...+|.+++.|++|+|.+|.|...-|++|..+ .|++|-++
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 9999987644 3467889999999999999996666799999999999999999976668899988 78877554
Q ss_pred -ccCC
Q 043765 448 -VADC 451 (452)
Q Consensus 448 -~~~c 451 (452)
.|||
T Consensus 451 flCDC 455 (873)
T KOG4194|consen 451 FLCDC 455 (873)
T ss_pred eEEec
Confidence 3666
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3e-39 Score=298.61 Aligned_cols=387 Identities=21% Similarity=0.240 Sum_probs=334.8
Q ss_pred HHHHHHHHHhCcCCC----CCccCCCCCCCCceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCC
Q 043765 28 QQVLLALKAHITYDP----TNFLAQNWTSNTSFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTL 103 (452)
Q Consensus 28 ~~~l~~~~~~~~~~p----~~~~~~~w~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 103 (452)
...+.+-+.++.... .+.+.. |.. .||+++|.+...-+..|.++++|+.+++..|.++ .+|.......+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~-~t~----~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl 127 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPS-QTQ----TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHL 127 (873)
T ss_pred ceeeecCccccccccccccCCcCcc-cee----eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccce
Confidence 345556666663321 122333 333 7999999999888888999999999999999998 788777777889
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccC
Q 043765 104 KFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGL 183 (452)
Q Consensus 104 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 183 (452)
+.|+|.+|.|.+.-.+.+..++.|+.|||+.|.|+ .+|..-+..-.++++|++++|+++..-...|..+.+|.+|.|+.
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 99999999999888889999999999999999998 78776655357899999999999977778899999999999999
Q ss_pred ccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCC
Q 043765 184 NDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLP 263 (452)
Q Consensus 184 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 263 (452)
|.++...+..|.++++|+.|++..|++...-...|.+++.|+.|.+..|.+.......|..+.++++|++..|++...-.
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 99996666788889999999999999984445679999999999999999999988899999999999999999984444
Q ss_pred hhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcch
Q 043765 264 SRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLS 342 (452)
Q Consensus 264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~ 342 (452)
.+.+ ++..|++|++++|.|..+-+++...+++|++|+|++|.+....+.+|..+..|+.+ ++.|.+...-...+..+.
T Consensus 287 g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 287 GWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred cccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 5555 99999999999999999888889999999999999999999999999999999987 777877766666677777
Q ss_pred hccceeecccccCcccCc---ccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCE
Q 043765 343 ISMERLYIFNCSISGNIP---QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDT 419 (452)
Q Consensus 343 ~~L~~L~L~~~~l~~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 419 (452)
+|+.|+|++|.+...+. ..|.++++|++|++.+|++..+...+|..+++|+.|+|.+|.|..+-|.+|..+ .|++
T Consensus 366 -sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 366 -SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKE 443 (873)
T ss_pred -hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhh
Confidence 99999999999886543 457889999999999999999888999999999999999999998888999988 8888
Q ss_pred EeCcC
Q 043765 420 LILDG 424 (452)
Q Consensus 420 L~l~~ 424 (452)
|.++.
T Consensus 444 Lv~nS 448 (873)
T KOG4194|consen 444 LVMNS 448 (873)
T ss_pred hhhcc
Confidence 87653
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=274.93 Aligned_cols=377 Identities=27% Similarity=0.401 Sum_probs=270.8
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++++.|+++ .+|++++++..++.++++.|++. ++|..+..+..|+.++++.|.+. ..+..++.+..++.++..+|+
T Consensus 72 vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 72 VLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred EEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccc
Confidence 4455555544 24444555555555555555555 55666666666666666666665 555666677777777777777
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .+|++++. +.++..+++.+|++. ..|+..-.++.|++|+...|.+. .+|+.++.+.+|.-|++..|++. .+|
T Consensus 149 i~-slp~~~~~-~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP- 222 (565)
T KOG0472|consen 149 IS-SLPEDMVN-LSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP- 222 (565)
T ss_pred cc-cCchHHHH-HHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-
Confidence 76 67777766 667777777777776 33443445788888888888877 77888899999999999999987 667
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASN 296 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 296 (452)
+|+++..|++++++.|++.-.+.+...+++++..||+++|++. +.|+.+. -+.+|+.||+++|.++ ..|..++++ +
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-h 298 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-H 298 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-e
Confidence 8889999999999999998888777888999999999999998 7888776 7888999999999998 456678888 8
Q ss_pred CcEEEeeCccccee------------------------------------------------------------------
Q 043765 297 LTILEMGLNSFSGF------------------------------------------------------------------ 310 (452)
Q Consensus 297 L~~L~L~~n~l~~~------------------------------------------------------------------ 310 (452)
|+.|-+.+|.+...
T Consensus 299 L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VP 378 (565)
T KOG0472|consen 299 LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVP 378 (565)
T ss_pred eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCC
Confidence 88888888876320
Q ss_pred ------------------------CCccccCchhHHH-hhcCCCCcccCCchhhcchhccceeecccccCcccCcccccC
Q 043765 311 ------------------------IPNKIGNLRTLQT-ALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISN 365 (452)
Q Consensus 311 ------------------------~~~~l~~l~~L~~-~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 365 (452)
.|..+..++.+.. +...++..+.+|..+..+. +|..|+|++|-+. .+|..++.
T Consensus 379 dEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~-kLt~L~L~NN~Ln-~LP~e~~~ 456 (565)
T KOG0472|consen 379 DEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ-KLTFLDLSNNLLN-DLPEEMGS 456 (565)
T ss_pred HHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh-cceeeecccchhh-hcchhhhh
Confidence 0000001111111 2455566666677777776 7888888877766 77777777
Q ss_pred CCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCCcee
Q 043765 366 LTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSL 445 (452)
Q Consensus 366 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 445 (452)
+..|+.|+++.|++.. .|..+-....++.+-.++|++....++.+.++.+|.+||+.+|.+ ..+|..+++|++|++|+
T Consensus 457 lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLE 534 (565)
T ss_pred hhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhccccceeEEE
Confidence 7778888888887763 555544444555555556777766666688899999999999988 57899999999999988
Q ss_pred ccccC
Q 043765 446 LNVAD 450 (452)
Q Consensus 446 l~~~~ 450 (452)
+.++.
T Consensus 535 L~gNp 539 (565)
T KOG0472|consen 535 LDGNP 539 (565)
T ss_pred ecCCc
Confidence 87653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=1.3e-35 Score=276.72 Aligned_cols=356 Identities=24% Similarity=0.361 Sum_probs=282.8
Q ss_pred eEEeCCCCcc-ccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQ-GTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (452)
.+|+++|.++ +.+|..+..+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.+..|
T Consensus 11 GvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred cccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcc
Confidence 5799999999 569999999999999999999887 78999999999999999999998 55577889999999999999
Q ss_pred CCc-ccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecC
Q 043765 136 RFS-GELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEI 214 (452)
Q Consensus 136 ~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 214 (452)
.+. .-+|..+|. +..|.+||+++|++. ..|..+..-+++-.|++++|++..+....|.+++.|-.||+++|++. .+
T Consensus 89 ~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L 165 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML 165 (1255)
T ss_pred ccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc
Confidence 885 368999999 999999999999998 78999999999999999999998555556789999999999999997 78
Q ss_pred CcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCc-ccCChhhhcCCCCCcEEeccccceeecCCccccC
Q 043765 215 PLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLS-GNLPSRTDLALPNIDYLGLAINRFSGTIPSFITN 293 (452)
Q Consensus 215 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 293 (452)
|..+.++..|+.|.+++|.+.......+..+++|+.|++++.+-+ ..+|..+. .+.+|..+|+|.|.+. ..|+++-+
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhccccccCCC-cchHHHhh
Confidence 889999999999999999998777777788889999999987643 57787776 8999999999999999 78899999
Q ss_pred CCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEE
Q 043765 294 ASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQ 373 (452)
Q Consensus 294 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 373 (452)
+++|+.|+|++|.++..-. ....-. ++++|++++|+++ .+|..+..+++|+.|.
T Consensus 244 l~~LrrLNLS~N~iteL~~-~~~~W~------------------------~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNM-TEGEWE------------------------NLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhheeccCcCceeeeec-cHHHHh------------------------hhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 9999999999999874321 111111 5566666666666 6666666666666666
Q ss_pred ccCCcCCc-ccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCCceecc
Q 043765 374 LGGNELTG-PVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447 (452)
Q Consensus 374 l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 447 (452)
..+|+++- -+|..++++..|+.+..++|.+. ..|++++.|+.|+.|.|+.|++. .+|+++.-++.|+.||+.
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence 66665532 35555566666666666666555 56666666666666666666653 356666666666665554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=1e-33 Score=251.22 Aligned_cols=384 Identities=27% Similarity=0.351 Sum_probs=308.9
Q ss_pred CCCCCceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCE
Q 043765 50 WTSNTSFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLV 129 (452)
Q Consensus 50 w~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 129 (452)
|...+.-.++++.|.+....++ +.++..++++++++|++. ..|.+++.+..++.++.++|++. .+|..+..+.+++.
T Consensus 42 W~qv~l~~lils~N~l~~l~~d-l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVLRED-LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVK 118 (565)
T ss_pred hhhcchhhhhhccCchhhccHh-hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence 7777777899999999865554 889999999999999998 78899999999999999999998 88899999999999
Q ss_pred EECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeeccc
Q 043765 130 SDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNK 209 (452)
Q Consensus 130 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 209 (452)
+++++|.+. .+|++++. +..+..++..+|++. ..|+++.++.+|..+++.+|++....|+.+ +|+.|++||...|.
T Consensus 119 l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNL 194 (565)
T ss_pred hhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhh
Confidence 999999998 99999998 999999999999998 778889999999999999999985544444 49999999999998
Q ss_pred ceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCc
Q 043765 210 LHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPS 289 (452)
Q Consensus 210 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 289 (452)
+. .+|..++.+.+|+.|++..|++...+ .|.++..|+++++..|++. .+|......++++..||+..|+++ ..|+
T Consensus 195 L~-tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pd 269 (565)
T KOG0472|consen 195 LE-TLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPD 269 (565)
T ss_pred hh-cCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCch
Confidence 87 88999999999999999999998776 6899999999999999998 888888889999999999999999 7788
Q ss_pred cccCCCCCcEEEeeCcccceeCCccccCchhHHH--------------------------hhc-------CCCC------
Q 043765 290 FITNASNLTILEMGLNSFSGFIPNKIGNLRTLQT--------------------------ALS-------NNPL------ 330 (452)
Q Consensus 290 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~--------------------------~~~-------~~~~------ 330 (452)
.+.-+.+|+.||+++|.+++.++ .++++ .|+. +-+ .+..
T Consensus 270 e~clLrsL~rLDlSNN~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHHhhhhhhhcccCCccccCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 88889999999999999985543 34433 1111 000 0000
Q ss_pred --------------------------cccCCchhhcchh--ccceeecccccCc-----------------------ccC
Q 043765 331 --------------------------DGILPSSIGNLSI--SMERLYIFNCSIS-----------------------GNI 359 (452)
Q Consensus 331 --------------------------~~~~p~~~~~~~~--~L~~L~L~~~~l~-----------------------~~~ 359 (452)
...+|.+.+.... -...++++.|++. +-+
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence 1112333222210 1445566665554 123
Q ss_pred cccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCC-ccccCC
Q 043765 360 PQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIP-TCLGNL 438 (452)
Q Consensus 360 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~ 438 (452)
|..++.+++|..|++++|.+.+ +|..++.+..||.|+++.|++. .+|..+...-.++.+-.++|++. +++ +.+.++
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm 504 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNM 504 (565)
T ss_pred hHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhh
Confidence 3344567788888998887774 6667777888999999999888 77877777777788878888884 454 459999
Q ss_pred CCCCceeccccC
Q 043765 439 TSLEGSLLNVAD 450 (452)
Q Consensus 439 ~~L~~L~l~~~~ 450 (452)
.+|..||+..++
T Consensus 505 ~nL~tLDL~nNd 516 (565)
T KOG0472|consen 505 RNLTTLDLQNND 516 (565)
T ss_pred hhcceeccCCCc
Confidence 999999998776
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.4e-31 Score=250.05 Aligned_cols=336 Identities=23% Similarity=0.323 Sum_probs=273.2
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCc-ccCCccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLS-GSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n 135 (452)
.|.|...++. .+|+.++++.+|++|.+++|++. .+...+..++.||.+++..|++. +.+|..+.++..|..|||++|
T Consensus 36 WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 36 WLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN 113 (1255)
T ss_pred EEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh
Confidence 4667777765 47888999999999999999987 45567888999999999999885 457888899999999999999
Q ss_pred CCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCC
Q 043765 136 RFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIP 215 (452)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 215 (452)
++. ..|..+-. ..++-+|++++|++..+....|.+++.|-.|++++|.+. .+|+.+..+..|++|++++|.+...--
T Consensus 114 qL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 114 QLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 998 88988876 788999999999998554456788999999999999998 677788999999999999998764333
Q ss_pred cccCCCCCCCEEEccCCccc-ccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCC
Q 043765 216 LEVGNLRNQDTLWLGSNNLV-GIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNA 294 (452)
Q Consensus 216 ~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 294 (452)
..+..+..|+.|.+++.+-+ .-.|..+..+.+|..++++.|.+. .+|+..+ .+++|+.|+||+|.|+ .+.......
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~it-eL~~~~~~W 267 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKIT-ELNMTEGEW 267 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCcee-eeeccHHHH
Confidence 44556777888888887665 445677888999999999999987 7787777 8999999999999998 444556778
Q ss_pred CCCcEEEeeCcccceeCCccccCchhHHHhhcC-CCCc-ccCCchhhcchhccceeecccccCcccCcccccCCCCCCEE
Q 043765 295 SNLTILEMGLNSFSGFIPNKIGNLRTLQTALSN-NPLD-GILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVL 372 (452)
Q Consensus 295 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~-~~~~-~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 372 (452)
.+|++|+++.|+++ ..|++++.++.|+++... |.+. ..+|+.|+.+. .|+.+..++|++. ..|+.++.|..|+.|
T Consensus 268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~-~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI-QLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh-hhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 89999999999997 778899999988887444 3333 34778888777 7888888888777 778888888888888
Q ss_pred EccCCcCCcccchhccCCCccceeecccCccc
Q 043765 373 QLGGNELTGPVLVTFDRLQNLQGLFLSSNKLA 404 (452)
Q Consensus 373 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 404 (452)
.+++|++.. .|+.+.-++.|+.|++..|.-.
T Consensus 345 ~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 345 KLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccccceee-chhhhhhcCCcceeeccCCcCc
Confidence 888887763 6677777778888888777644
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-29 Score=246.47 Aligned_cols=375 Identities=27% Similarity=0.344 Sum_probs=240.0
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
+||++.|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|++++|.
T Consensus 49 ~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 49 SLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred Eeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhc
Confidence 7899988876 57777888899999999999887 67788888999999999998887 788888999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCc-------------------cCCccCCccccCCCCCCEEEccCccccccCCCCccCC
Q 043765 137 FSGELPETICNYLPNLKALLLNNN-------------------MIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNF 197 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 197 (452)
+. .+|.-+.. +..+..+..++| .+.+.++..+..+.. .|++.+|.+... .+..+
T Consensus 126 f~-~~Pl~i~~-lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~~ 198 (1081)
T KOG0618|consen 126 FG-PIPLVIEV-LTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSNL 198 (1081)
T ss_pred cC-CCchhHHh-hhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhhc
Confidence 87 77765543 444444444443 333333333333333 466666655411 11222
Q ss_pred --------------------CCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCc
Q 043765 198 --------------------TSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNS 257 (452)
Q Consensus 198 --------------------~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 257 (452)
++|+.|+...|.++... ......++++++++.+.+++.+ +++..+.+|+.++..+|.
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNR 275 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeecchhhhhcch-HHHHhcccceEecccchh
Confidence 34445555555544211 1223457788888888888776 888888888888888888
Q ss_pred CcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchh-HHHhhcCCCCcccCCc
Q 043765 258 LSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRT-LQTALSNNPLDGILPS 336 (452)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~~~~~~~~~~~~p~ 336 (452)
+. .+|..++ ...+|+.+.+.+|.+. .+|....+.+.|++|+|..|.+...++..+..+.. ++.+-...+.....|.
T Consensus 276 l~-~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 276 LV-ALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred HH-hhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 85 7777777 7788888888888888 55667788999999999999987655544433322 3333112222222232
Q ss_pred hhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccc-----------
Q 043765 337 SIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAG----------- 405 (452)
Q Consensus 337 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~----------- 405 (452)
.-......|+.|.+.+|.+++..-+.+.++++|+.|++++|++.......+.+++.|++|+|++|+++.
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL 432 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence 211222245555555555555444445555555555555555554444445555555555555555441
Q ss_pred -----------cChhhhcCCCCCCEEeCcCCcccc-cCCccccCCCCCCceecccc
Q 043765 406 -----------SIPDDLCRLHRLDTLILDGNEFSE-SIPTCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 406 -----------~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~ 449 (452)
..| .+..+++|+.+|++.|.++. .+|+.... +.|++||++.+
T Consensus 433 ~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 433 HTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred HHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 444 56667777777777777765 34444433 67777777754
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=9.6e-26 Score=242.40 Aligned_cols=340 Identities=20% Similarity=0.248 Sum_probs=187.8
Q ss_pred CCcCCCCCCCCCEEeCCCCc------CCCcCChhhhCCC-CCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccC
Q 043765 69 IPPQLGNLSSLVTLDLSQNK------LSGDIPSSIFTMH-TLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGEL 141 (452)
Q Consensus 69 ~~~~~~~l~~L~~L~ls~n~------l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 141 (452)
.+.+|..+++|+.|.+..+. +...+|..|..++ +|+.|.+.++.+. .+|..+ ...+|++|++.+|.+. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 34457777788887775543 2223555565553 5777777777665 455554 4677777777777776 66
Q ss_pred chHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCC
Q 043765 142 PETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNL 221 (452)
Q Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 221 (452)
+.++.. +++|++++++++.....+|. ++.+++|++|++++|.....+|..++.+++|+.|++++|...+.+|..+ ++
T Consensus 627 ~~~~~~-l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 627 WDGVHS-LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccc-CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 666655 77777777777654445553 6677777777777776555677777777777777777765444566544 56
Q ss_pred CCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEecccccee-------ecCCccccCC
Q 043765 222 RNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFS-------GTIPSFITNA 294 (452)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~l~~~ 294 (452)
++|+.|++++|......|.. ..+|+.|++++|.+. .+|... .+++|+.|++..+... ...+..+...
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhcc
Confidence 77777777776554443332 345677777777665 455433 4566666666543211 1111122234
Q ss_pred CCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEE
Q 043765 295 SNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQ 373 (452)
Q Consensus 295 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 373 (452)
++|+.|++++|...+.+|..+.++++|+.+ +..+...+.+|..+ .+. +|+.|++++|.....+|.. .++|+.|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~ 852 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLN 852 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc-ccCEEECCCCCcccccccc---ccccCEeE
Confidence 566666666665544555544444444333 22222333333332 222 4555555554333233321 23444555
Q ss_pred ccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCc
Q 043765 374 LGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNE 426 (452)
Q Consensus 374 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 426 (452)
+++|.+.. +|..+..+++|+.|++++|+-...+|..+..++.|+.+++++|.
T Consensus 853 Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 853 LSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 55554442 34444445555555555433332344444444555555555553
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=5e-27 Score=208.42 Aligned_cols=397 Identities=20% Similarity=0.196 Sum_probs=280.7
Q ss_pred HHHHHHHhCcCCCCCccCCCCCCCCceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCC
Q 043765 30 VLLALKAHITYDPTNFLAQNWTSNTSFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFS 109 (452)
Q Consensus 30 ~l~~~~~~~~~~p~~~~~~~w~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~ 109 (452)
...+-.++++..|...... ...|+|..|+|+...|.+|+.+++|++||||+|.|+.+-|++|.+++.|.+|-+.
T Consensus 50 ~VdCr~~GL~eVP~~LP~~------tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPE------TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred eEEccCCCcccCcccCCCc------ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh
Confidence 4445555666666543322 3389999999999999999999999999999999998899999999998887665
Q ss_pred C-CcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCcccc-
Q 043765 110 D-NQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLS- 187 (452)
Q Consensus 110 ~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~- 187 (452)
+ |+|+......|+++..++.|.+.-|++. -++...+..++++..|.+.+|.+...-...|..+.+++.+.+..|.+.
T Consensus 124 g~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 124 GNNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred cCCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc
Confidence 5 9999888889999999999999999998 666666666999999999999998554558999999999999888731
Q ss_pred -----------ccCCCCccCCCCccEEEee-------------------------cccceecCC-cccCCCCCCCEEEcc
Q 043765 188 -----------GAIPKEIGNFTSLQKISLI-------------------------YNKLHGEIP-LEVGNLRNQDTLWLG 230 (452)
Q Consensus 188 -----------~~~~~~~~~l~~L~~L~l~-------------------------~n~~~~~~~-~~~~~l~~L~~L~l~ 230 (452)
...|..++...-..-..+. .+...+..| ..|..+++|++++++
T Consensus 203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 1122222222111111111 111122222 247889999999999
Q ss_pred CCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCccccee
Q 043765 231 SNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGF 310 (452)
Q Consensus 231 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 310 (452)
+|.++++.+.+|.+...+++|.+..|++. .+....|.++..|+.|+|.+|+|+...|.+|.....|.+|++-.|.+...
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 99999999999999999999999999997 77788888999999999999999999999999999999999988876422
Q ss_pred CCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCccc---Cccc---------ccCCCCCCEEEccCCc
Q 043765 311 IPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGN---IPQV---------ISNLTNFTVLQLGGNE 378 (452)
Q Consensus 311 ~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~---~~~~---------~~~~~~L~~L~l~~n~ 378 (452)
+.+.-|..++..+...|..|-. -+..++.+.+++..+... .|+. -..++-+....=..|+
T Consensus 362 -----C~l~wl~~Wlr~~~~~~~~~Cq---~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk 433 (498)
T KOG4237|consen 362 -----CRLAWLGEWLRKKSVVGNPRCQ---SPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNK 433 (498)
T ss_pred -----cchHHHHHHHhhCCCCCCCCCC---CCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhccc
Confidence 3455666666666544443321 122455666655433211 1111 1123333333222232
Q ss_pred CCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCCceeccc
Q 043765 379 LTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLNV 448 (452)
Q Consensus 379 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 448 (452)
....+|..+. ..-.++++.+|.++ .+|.. .+.+| .+++++|+++---...|.+++.|..|-+++
T Consensus 434 ~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 434 LLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred chhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence 2223333322 24567888888888 55555 55667 888999988654455778888888777665
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.9e-23 Score=223.39 Aligned_cols=320 Identities=21% Similarity=0.228 Sum_probs=248.6
Q ss_pred ccCCcCCCCCC-CCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHH
Q 043765 67 GTIPPQLGNLS-SLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETI 145 (452)
Q Consensus 67 ~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 145 (452)
..+|+.|..++ +|+.|.+.++.+. .+|..| ...+|+.|+++++++. .++..+..+++|++|+++++...+.+|. +
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l 653 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-L 653 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-c
Confidence 34677676664 6999999999887 667766 5789999999999987 5677788999999999998865557775 4
Q ss_pred hhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCC
Q 043765 146 CNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQD 225 (452)
Q Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 225 (452)
.. +++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|.. ..+|+
T Consensus 654 s~-l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 654 SM-ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred cc-CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 44 8999999999987666889999999999999999987655777655 7899999999998765555543 46789
Q ss_pred EEEccCCcccccccccccCCCCccEEeccCCcCc---c---cCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcE
Q 043765 226 TLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLS---G---NLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTI 299 (452)
Q Consensus 226 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~---~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 299 (452)
+|+++++.+...+. .+ .+++|+.|++.++... + .++...+...++|+.|++++|.....+|..+.++++|+.
T Consensus 729 ~L~L~~n~i~~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 729 WLDLDETAIEEFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred eeecCCCccccccc-cc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 99999999876543 22 5678888888764321 1 112222335678999999999877788999999999999
Q ss_pred EEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCc
Q 043765 300 LEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNE 378 (452)
Q Consensus 300 L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 378 (452)
|++++|...+.+|... .+++|+.+ ++.+.....+|.. ..+++.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred EECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 9999986655666654 56666655 5555555555542 238999999999998 789889999999999999965
Q ss_pred CCcccchhccCCCccceeecccCcc
Q 043765 379 LTGPVLVTFDRLQNLQGLFLSSNKL 403 (452)
Q Consensus 379 i~~~~~~~~~~~~~L~~L~l~~n~i 403 (452)
--..+|.....+++|+.+++++|.-
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CcCccCcccccccCCCeeecCCCcc
Confidence 4445677778899999999999863
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=7.1e-27 Score=227.77 Aligned_cols=368 Identities=25% Similarity=0.354 Sum_probs=266.0
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++++.|-+-...-+.+.+.-+|++|++++|++. .+|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|.+|.
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNR 102 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccch
Confidence 5666666654322233344445999999999987 78889999999999999999998 667888999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
.. .+|.++.. +.+|++|+++.|.+. .+|..+..+..+..+..++|...... +... .+.+++..|.+.+.++.
T Consensus 103 l~-~lP~~~~~-lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~l----g~~~-ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 103 LQ-SLPASISE-LKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRL----GQTS-IKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred hh-cCchhHHh-hhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhh----cccc-chhhhhhhhhcccchhc
Confidence 98 89999887 999999999999987 66776766666666666666221111 1111 44444444444444444
Q ss_pred ccC-------------------CCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEe
Q 043765 217 EVG-------------------NLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLG 277 (452)
Q Consensus 217 ~~~-------------------~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 277 (452)
++. .+++|+.+....|++....- .-++++.|..++|.++ ... ..+ ...+|++++
T Consensus 175 ~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~-~~~-~~p-~p~nl~~~d 247 (1081)
T KOG0618|consen 175 DIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLT-TLD-VHP-VPLNLQYLD 247 (1081)
T ss_pred chhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcce-eec-ccc-ccccceeee
Confidence 433 44444444444444433221 2245677777777776 221 111 456899999
Q ss_pred ccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcc
Q 043765 278 LAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISG 357 (452)
Q Consensus 278 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~ 357 (452)
+++|+++ .+|+|+..|.+|+.++..+|.+. ..|..+....+|+.+....+-...+|....... +|++|+|..|++.
T Consensus 248 is~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~-sL~tLdL~~N~L~- 323 (1081)
T KOG0618|consen 248 ISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLK-SLRTLDLQSNNLP- 323 (1081)
T ss_pred cchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccc-eeeeeeehhcccc-
Confidence 9999999 55699999999999999999995 667777777888877555555566777777676 8999999999887
Q ss_pred cCccccc--------------------------CCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhh
Q 043765 358 NIPQVIS--------------------------NLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDL 411 (452)
Q Consensus 358 ~~~~~~~--------------------------~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 411 (452)
..|+.+- ..+.|+.|.+.+|.+++.....+.++++|+.|+|++|++.......+
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH
Confidence 4443211 12456778888888888777778888999999999999985555567
Q ss_pred cCCCCCCEEeCcCCcccccCCccccCCCCCCceec
Q 043765 412 CRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLL 446 (452)
Q Consensus 412 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 446 (452)
.+++.|++|+|+||+++ .+|..+..+..|+.|..
T Consensus 404 ~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 88999999999999995 68888888888887543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=8.8e-22 Score=197.67 Aligned_cols=266 Identities=22% Similarity=0.341 Sum_probs=179.4
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEE
Q 043765 101 HTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLN 180 (452)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 180 (452)
.+-..|+++++.++ .+|..+. .+|+.|++.+|.++ .+|.. +++|++|++++|.++ .+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLT-SLPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccC-cccCc---ccccceee
Confidence 34667788888777 4555554 36778888888777 56642 567888888888777 34532 35777788
Q ss_pred ccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcc
Q 043765 181 LGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSG 260 (452)
Q Consensus 181 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 260 (452)
+++|.+. .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|.+++++. . ...|+.|++++|.+.
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~-l---p~~L~~L~Ls~N~L~- 335 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPA-L---PSELCKLWAYNNQLT- 335 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCC-C---cccccccccccCccc-
Confidence 8877776 34432 246777777777776 3443 23567777777777776432 1 234667777777776
Q ss_pred cCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhc
Q 043765 261 NLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGN 340 (452)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~ 340 (452)
.+|. ...+|+.|++++|++++ +|.. .++|+.|++++|.+.+ +|..
T Consensus 336 ~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l-------------------------- 380 (788)
T PRK15387 336 SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-------------------------- 380 (788)
T ss_pred cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc--------------------------
Confidence 3442 12467777777777774 3432 3456667777776652 2211
Q ss_pred chhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEE
Q 043765 341 LSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTL 420 (452)
Q Consensus 341 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 420 (452)
+.+|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|
T Consensus 381 -~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 381 -PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred -ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence 127888999999888 45543 3678899999998886 4443 346888999999988 678888889999999
Q ss_pred eCcCCcccccCCcccc
Q 043765 421 ILDGNEFSESIPTCLG 436 (452)
Q Consensus 421 ~l~~n~~~~~~~~~~~ 436 (452)
++++|++++..+..+.
T Consensus 451 dLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 451 NLEGNPLSERTLQALR 466 (788)
T ss_pred ECCCCCCCchHHHHHH
Confidence 9999999887666553
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.1e-21 Score=194.90 Aligned_cols=263 Identities=24% Similarity=0.355 Sum_probs=179.0
Q ss_pred ceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 043765 55 SFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLST 134 (452)
Q Consensus 55 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 134 (452)
...|++++++++ .+|+.+. ++|+.|++++|+++. +|. ..++|++|++++|+++. +|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 337999999998 5777665 489999999999984 554 35889999999999984 4432 46888999999
Q ss_pred CCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecC
Q 043765 135 NRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEI 214 (452)
Q Consensus 135 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 214 (452)
|.+. .+|.. ..+|+.|++++|+++ .+|. ..++|+.|++++|++.+ +|.. ..+|+.|++++|.+. .+
T Consensus 272 N~L~-~Lp~l----p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 272 NPLT-HLPAL----PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL 337 (788)
T ss_pred Cchh-hhhhc----hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence 9887 66652 457889999999887 4554 24679999999998874 4442 235778888888876 35
Q ss_pred CcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCC
Q 043765 215 PLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNA 294 (452)
Q Consensus 215 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 294 (452)
|.. ..+|+.|++++|+++++++ . ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+++ +|.. .
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred ccc---ccccceEecCCCccCCCCC-C---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc---c
Confidence 531 2467888888888876542 1 245777777777776 35432 3467777777777774 3332 2
Q ss_pred CCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEc
Q 043765 295 SNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQL 374 (452)
Q Consensus 295 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l 374 (452)
++|+.|++++|.+.+ +|... ..|+.|++++|+++ .+|..+..+++|+.|++
T Consensus 402 s~L~~LdLS~N~Lss-IP~l~---------------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPMLP---------------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cCCCEEEccCCcCCC-CCcch---------------------------hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 567777777776653 22211 14555666666666 56666666666666666
Q ss_pred cCCcCCcccchhc
Q 043765 375 GGNELTGPVLVTF 387 (452)
Q Consensus 375 ~~n~i~~~~~~~~ 387 (452)
++|++.+..+..+
T Consensus 453 s~N~Ls~~~~~~L 465 (788)
T PRK15387 453 EGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCchHHHHH
Confidence 6666666544443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=3.7e-24 Score=190.32 Aligned_cols=294 Identities=20% Similarity=0.235 Sum_probs=227.4
Q ss_pred eeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC-
Q 043765 56 FSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLST- 134 (452)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~- 134 (452)
..++.++-+++. +|..+. +.-..+.|..|+|+...+.+|..+++||+|||++|.|+.+-|.+|.++.++..|-+.+
T Consensus 49 ~~VdCr~~GL~e-VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLTE-VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCccc-CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 468888888874 554332 4678999999999988889999999999999999999999999999999998877666
Q ss_pred CCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccce---
Q 043765 135 NRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLH--- 211 (452)
Q Consensus 135 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--- 211 (452)
|+|+ ++|...|.++..++-|.+.-|++.-...++|..+++|..|.+.+|.+...-...|..+..++.+.+..|.+-
T Consensus 126 NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 126 NKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred Cchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 9998 999999998999999999999998777789999999999999999998554558889999999999888732
Q ss_pred ---------ecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEE--e-ccCCcCcccCChhhhcCCCCCcEEecc
Q 043765 212 ---------GEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEI--D-LFNNSLSGNLPSRTDLALPNIDYLGLA 279 (452)
Q Consensus 212 ---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L--~-l~~n~~~~~~~~~~~~~~~~L~~L~l~ 279 (452)
...|-.++..+......+.+.++....+..+... ++.+ . .+.+...+..|...|..+++|++++++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 1223344444444444444555554444433322 2222 1 223334457788888899999999999
Q ss_pred ccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccC
Q 043765 280 INRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNI 359 (452)
Q Consensus 280 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~ 359 (452)
+|.++.+-+.+|.+...+++|.|..|++.......|.++. .|+.|+|++|+|+-..
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls------------------------~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLS------------------------GLKTLSLYDNQITTVA 338 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccc------------------------cceeeeecCCeeEEEe
Confidence 9999998889999999999999999988754444444333 6777888888888777
Q ss_pred cccccCCCCCCEEEccCCcC
Q 043765 360 PQVISNLTNFTVLQLGGNEL 379 (452)
Q Consensus 360 ~~~~~~~~~L~~L~l~~n~i 379 (452)
|..|....+|.+|++-.|.+
T Consensus 339 ~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccccccceeeeeehccCcc
Confidence 88888888888888876654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=4.1e-20 Score=186.83 Aligned_cols=15 Identities=0% Similarity=-0.071 Sum_probs=9.0
Q ss_pred ChhhHHHHHHHHHhC
Q 043765 24 ITTDQQVLLALKAHI 38 (452)
Q Consensus 24 ~~~~~~~l~~~~~~~ 38 (452)
..++.+.+....+.+
T Consensus 61 ~~~~~~~~~~~~~~l 75 (754)
T PRK15370 61 SPEEIKSKFECLRML 75 (754)
T ss_pred CHHHHHHHHHHHHHh
Confidence 345566666666666
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=8.5e-19 Score=177.35 Aligned_cols=245 Identities=22% Similarity=0.374 Sum_probs=108.9
Q ss_pred CCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEee
Q 043765 127 MLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLI 206 (452)
Q Consensus 127 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 206 (452)
...|+++++.++ .+|..+ .+.++.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 344444444444 344433 234455555555544 2333222 34555555555544 2333222 245555555
Q ss_pred cccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeec
Q 043765 207 YNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGT 286 (452)
Q Consensus 207 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 286 (452)
+|.+. .+|..+. ..|+.|++++|.+..++ ..+. ++|+.|++++|.++ .+|... .++|+.|++++|.++.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP-~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISCLP-ENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTA- 318 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCccc-cccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcccc-
Confidence 55544 3333332 24555555555554322 2221 24555555555554 233221 1245555555555552
Q ss_pred CCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCC
Q 043765 287 IPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNL 366 (452)
Q Consensus 287 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 366 (452)
+|..+ .++|+.|++++|.+++ +|..+ . ++|+.|++++|+++ .+|..+ .
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l-----------------------~---~sL~~L~Ls~N~L~-~LP~~l--p 366 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASL-----------------------P---PELQVLDVSKNQIT-VLPETL--P 366 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhh-----------------------c---CcccEEECCCCCCC-cCChhh--c
Confidence 22222 2455555555555442 11111 0 15555555555555 344433 2
Q ss_pred CCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhh----hcCCCCCCEEeCcCCccc
Q 043765 367 TNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDD----LCRLHRLDTLILDGNEFS 428 (452)
Q Consensus 367 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~~~ 428 (452)
++|++|++++|+++. +|..+. ++|+.|++++|++. .+|.. +..++.+..+++.+|++.
T Consensus 367 ~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 455556665555553 232222 24555555555555 33332 223355555666666553
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=4.5e-20 Score=173.23 Aligned_cols=82 Identities=26% Similarity=0.251 Sum_probs=40.5
Q ss_pred EEeCCCCcCc-ccCCccccCCCCCCEEECcCCCCccc----CchHHhhcCCCCCEEEccCccCCc------cCCccccCC
Q 043765 105 FLYFSDNQLS-GSLSSFTFNMSSMLVSDLSTNRFSGE----LPETICNYLPNLKALLLNNNMIHG------KIPSILSKC 173 (452)
Q Consensus 105 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l 173 (452)
.|+|..+.+. ......+..+.+|++|+++++.++.. ++..+.. .+++++++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~-~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRP-QPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhh-CCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3556666665 23334455566666666666666421 2222322 4556666666655431 112233444
Q ss_pred CCCCEEEccCcccc
Q 043765 174 KQLQQLNLGLNDLS 187 (452)
Q Consensus 174 ~~L~~L~l~~n~~~ 187 (452)
++|+.|++++|.+.
T Consensus 81 ~~L~~L~l~~~~~~ 94 (319)
T cd00116 81 CGLQELDLSDNALG 94 (319)
T ss_pred CceeEEEccCCCCC
Confidence 45555555555443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=5.7e-20 Score=172.54 Aligned_cols=106 Identities=24% Similarity=0.195 Sum_probs=69.1
Q ss_pred EEeCCCCcCC-CcCChhhhCCCCCCEEeCCCCcCcc----cCCccccCCCCCCEEECcCCCCcc------cCchHHhhcC
Q 043765 81 TLDLSQNKLS-GDIPSSIFTMHTLKFLYFSDNQLSG----SLSSFTFNMSSMLVSDLSTNRFSG------ELPETICNYL 149 (452)
Q Consensus 81 ~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~~l 149 (452)
.|+|..+.++ ......+..+.+|+.++++++.++. .++..+...+++++++++++.+.+ .++..+.. +
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-G 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-c
Confidence 4667777776 3344556677788888888888743 245556677788888888887752 22334444 7
Q ss_pred CCCCEEEccCccCCccCCccccCCCC---CCEEEccCcccc
Q 043765 150 PNLKALLLNNNMIHGKIPSILSKCKQ---LQQLNLGLNDLS 187 (452)
Q Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~~~ 187 (452)
++|++|++++|.+....+..+..+.+ |++|++++|.++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 78888888888876444444433333 666666666554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=6e-20 Score=145.45 Aligned_cols=162 Identities=30% Similarity=0.481 Sum_probs=126.2
Q ss_pred CCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCC
Q 043765 73 LGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNL 152 (452)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 152 (452)
+..+++.+.|.+|+|+++ .+|..++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++.|++. .+|.+++. +|.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-FPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-Cchh
Confidence 446677888888888887 56667888888888888888887 66777778888888888888776 77777777 8888
Q ss_pred CEEEccCccCC-ccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccC
Q 043765 153 KALLLNNNMIH-GKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGS 231 (452)
Q Consensus 153 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 231 (452)
++||+++|.+. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+. .+|.+++.+.+|++|++.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 88888887765 356777777788888888888876 67777888888888888888776 6778888888888888888
Q ss_pred Ccccccccc
Q 043765 232 NNLVGIVLS 240 (452)
Q Consensus 232 ~~~~~~~~~ 240 (452)
|+++-.+|+
T Consensus 183 nrl~vlppe 191 (264)
T KOG0617|consen 183 NRLTVLPPE 191 (264)
T ss_pred ceeeecChh
Confidence 887766554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4e-19 Score=140.82 Aligned_cols=159 Identities=33% Similarity=0.512 Sum_probs=144.6
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+.|+.|.++. .|+.++.+.+|+.|++++|++. ++|..++.+++|+.|+++-|++. ..|..|+.++-|++||+.+|.
T Consensus 37 rLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 37 RLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccc
Confidence 78899999985 6677999999999999999998 78999999999999999999988 889999999999999999998
Q ss_pred Ccc-cCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCC
Q 043765 137 FSG-ELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIP 215 (452)
Q Consensus 137 ~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 215 (452)
+.. .+|..+|. +..|+.|++++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|++.+|+++ .+|
T Consensus 114 l~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlp 189 (264)
T KOG0617|consen 114 LNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLP 189 (264)
T ss_pred cccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecC
Confidence 863 67888877 899999999999998 78888999999999999999988 78999999999999999999998 677
Q ss_pred cccCCCC
Q 043765 216 LEVGNLR 222 (452)
Q Consensus 216 ~~~~~l~ 222 (452)
.+++.+.
T Consensus 190 pel~~l~ 196 (264)
T KOG0617|consen 190 PELANLD 196 (264)
T ss_pred hhhhhhh
Confidence 7776653
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.30 E-value=2.3e-11 Score=123.10 Aligned_cols=159 Identities=25% Similarity=0.345 Sum_probs=111.9
Q ss_pred cCCChhhHHHHHHHHHhCcCCCCCccCCCCCCCCceeEEeCCCCccccCC--cCCCCCCCCCEEeCCCCcCCCcCChhhh
Q 043765 21 SNNITTDQQVLLALKAHITYDPTNFLAQNWTSNTSFSLNISSFNLQGTIP--PQLGNLSSLVTLDLSQNKLSGDIPSSIF 98 (452)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~l~l~~~~~~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 98 (452)
....+.|..++..+|..+. +|.. .. |.+.. |.- ..+...|..- ........++.|+|++|.+.|.+|..+.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~~--~~-W~g~~-C~p--~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~ 439 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPLR--FG-WNGDP-CVP--QQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS 439 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Cccc--CC-CCCCC-CCC--cccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence 3455678899999999884 3321 13 75422 200 0001111100 0001112477888888888888888888
Q ss_pred CCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCC-CCCC
Q 043765 99 TMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKC-KQLQ 177 (452)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~ 177 (452)
.+++|++|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|+.+.. +++|++|++++|.+.+.+|..+... .++.
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEECcCCcccccCChHHhhccccCc
Confidence 8888888898888888888888888888888999888888888888877 8889999998888888888777653 4667
Q ss_pred EEEccCcccc
Q 043765 178 QLNLGLNDLS 187 (452)
Q Consensus 178 ~L~l~~n~~~ 187 (452)
.+++.+|...
T Consensus 519 ~l~~~~N~~l 528 (623)
T PLN03150 519 SFNFTDNAGL 528 (623)
T ss_pred eEEecCCccc
Confidence 8888887643
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=3.6e-13 Score=119.17 Aligned_cols=240 Identities=17% Similarity=0.196 Sum_probs=132.0
Q ss_pred eEEeCCCCcccc----CCcCCCCCCCCCEEeCCCCc---CCCcCCh-------hhhCCCCCCEEeCCCCcCcccCCcc--
Q 043765 57 SLNISSFNLQGT----IPPQLGNLSSLVTLDLSQNK---LSGDIPS-------SIFTMHTLKFLYFSDNQLSGSLSSF-- 120 (452)
Q Consensus 57 ~l~l~~~~~~~~----~~~~~~~l~~L~~L~ls~n~---l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~-- 120 (452)
.|+|+||.+... +...+.+-++|+..++|+.- ....+|. ++.++++|+++|||+|.+....+..
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 677777776533 33345666677777776542 2223333 3335567777777777665333322
Q ss_pred --ccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCcccccc----CCCCc
Q 043765 121 --TFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGA----IPKEI 194 (452)
Q Consensus 121 --~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~ 194 (452)
+..+..|++|.|.+|.+...--..+.+ .|..+. . .....+-++|+++...+|.+... +...|
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA--V-------NKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred HHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH--H-------HhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 334566666666666554211111111 011110 0 00112335566666666665321 12234
Q ss_pred cCCCCccEEEeecccceec----CCcccCCCCCCCEEEccCCccccc----ccccccCCCCccEEeccCCcCccc----C
Q 043765 195 GNFTSLQKISLIYNKLHGE----IPLEVGNLRNQDTLWLGSNNLVGI----VLSTIFNKSAVKEIDLFNNSLSGN----L 262 (452)
Q Consensus 195 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~ 262 (452)
...+.|+.+.+..|.+... +...+..++.|+.|++.+|-++.. ....+..+++|+.|++++|.+... +
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 4556677777776665422 123456677777777777776532 234555667777788877776532 2
Q ss_pred ChhhhcCCCCCcEEeccccceeec----CCccccCCCCCcEEEeeCcccc
Q 043765 263 PSRTDLALPNIDYLGLAINRFSGT----IPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
...+....|.|+.+.+.+|.++.. +..++...+.|..|++++|.+.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 233334567888888888877642 2234556788888888888874
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=8.1e-12 Score=120.72 Aligned_cols=198 Identities=31% Similarity=0.448 Sum_probs=123.0
Q ss_pred EEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCC-CCCEEECcCCCCcccCchHHhhcCCCCCEEEccC
Q 043765 81 TLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMS-SMLVSDLSTNRFSGELPETICNYLPNLKALLLNN 159 (452)
Q Consensus 81 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 159 (452)
.++++.+.+.. ....+..++.++.|++.+|.+. .++....... +|++|++++|.+. .+|..+.. +++|+.|++++
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLSF 172 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhc-cccccccccCC
Confidence 46666666532 2334455566777777777766 4444444553 6777777777776 66555555 77777777777
Q ss_pred ccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccccccc
Q 043765 160 NMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVL 239 (452)
Q Consensus 160 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 239 (452)
|.+. .+|......++|+.|++++|++. .+|...+....|+++.+++|... ..+..+..+..+..+.+.+|++... +
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-P 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-c
Confidence 7776 44444446677777777777776 55554444555777777777433 3445566666666666666666543 3
Q ss_pred ccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCc
Q 043765 240 STIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPS 289 (452)
Q Consensus 240 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 289 (452)
..+..++.++.|++++|.++ .++. .....+++.++++++.+....+.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhccccccceecccccccc-cccc--ccccCccCEEeccCccccccchh
Confidence 45566667777777777776 4443 22667777777777777755544
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=3.8e-13 Score=126.09 Aligned_cols=193 Identities=25% Similarity=0.415 Sum_probs=157.9
Q ss_pred eEEeCCCCccccCCcCC-CCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQGTIPPQL-GNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (452)
++.|++..++...-+.. ..+..-...|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+.++..|.++|++.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence 67778777764322222 33455567888999988 78888888889999999999888 78888999999999999999
Q ss_pred CCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCC
Q 043765 136 RFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIP 215 (452)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 215 (452)
+++ .+|..++. + -|+.|-+++|+++ .+|+.++....|..|+.+.|.+. .+|..++.+.+|+.|.++.|.+. .+|
T Consensus 132 qlS-~lp~~lC~-l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp 205 (722)
T KOG0532|consen 132 QLS-HLPDGLCD-L-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLP 205 (722)
T ss_pred hhh-cCChhhhc-C-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCC
Confidence 998 88988875 4 4899999999988 77888888889999999999987 67778889999999999999887 677
Q ss_pred cccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCc
Q 043765 216 LEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLS 259 (452)
Q Consensus 216 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 259 (452)
..+..+ .|..||++.|++..++ ..|.++..|++|-|.+|++.
T Consensus 206 ~El~~L-pLi~lDfScNkis~iP-v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 206 EELCSL-PLIRLDFSCNKISYLP-VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHhCC-ceeeeecccCceeecc-hhhhhhhhheeeeeccCCCC
Confidence 777744 4788999999888664 56889999999999999886
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.22 E-value=2.1e-11 Score=126.04 Aligned_cols=329 Identities=24% Similarity=0.222 Sum_probs=157.2
Q ss_pred CCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCc--CcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCC
Q 043765 76 LSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQ--LSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLK 153 (452)
Q Consensus 76 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 153 (452)
....+...+-+|.+. .++.+. ..++|++|-+..|. +......+|..++.|++||+++|.-.+.+|..++. +-+||
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lr 598 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLR 598 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhh
Confidence 345555555555543 222221 23356666666664 44334444556666666666665554566666666 66666
Q ss_pred EEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccce--ecCCcccCCCCCCCEEEccC
Q 043765 154 ALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLH--GEIPLEVGNLRNQDTLWLGS 231 (452)
Q Consensus 154 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~ 231 (452)
+|+++++.+. .+|..+.++..|.+|++..+.....+|.....+++|++|.+...... ...-..+..+..|+.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 6666666665 55666666666666666665543344444445666666666544311 11111222233333332211
Q ss_pred CcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeC
Q 043765 232 NNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFI 311 (452)
Q Consensus 232 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 311 (452)
... . ....+..+..|... .+.+.+..+... ..+..+..+.+|+.|.+.++......
T Consensus 678 ~s~-~-~~e~l~~~~~L~~~---------------------~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 678 SSV-L-LLEDLLGMTRLRSL---------------------LQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred chh-H-hHhhhhhhHHHHHH---------------------hHhhhhcccccc-eeecccccccCcceEEEEcCCCchhh
Confidence 111 0 00001111111100 011111111111 22234556666777777666554322
Q ss_pred CccccC------chhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcc-cc
Q 043765 312 PNKIGN------LRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGP-VL 384 (452)
Q Consensus 312 ~~~l~~------l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~ 384 (452)
...... ++.+......+.-....+.+.... ++|++|.+..|.....+++....+..+..+.+..+.+.+. ..
T Consensus 734 ~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~-~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~ 812 (889)
T KOG4658|consen 734 IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFA-PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRML 812 (889)
T ss_pred cccccccchhhhHHHHHHHHhhccccccccchhhcc-CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceee
Confidence 111111 223333222222222233333233 3899999998887755555555566666666666666654 34
Q ss_pred hhccCCCccceeecccCcccccCh---hhhcCCCCCCEEeCcCC-cccccCCc
Q 043765 385 VTFDRLQNLQGLFLSSNKLAGSIP---DDLCRLHRLDTLILDGN-EFSESIPT 433 (452)
Q Consensus 385 ~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~n-~~~~~~~~ 433 (452)
.....++++..+.+.+-.+....- +....+|.+.++.+.+| ......|+
T Consensus 813 ~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred ecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCC
Confidence 455556666666665544332111 12345666677777775 33334444
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=6.5e-13 Score=117.57 Aligned_cols=248 Identities=19% Similarity=0.208 Sum_probs=151.8
Q ss_pred CCCCCCCCCEEeCCCCcCCCc----CChhhhCCCCCCEEeCCCCcC---cccCCc-------cccCCCCCCEEECcCCCC
Q 043765 72 QLGNLSSLVTLDLSQNKLSGD----IPSSIFTMHTLKFLYFSDNQL---SGSLSS-------FTFNMSSMLVSDLSTNRF 137 (452)
Q Consensus 72 ~~~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l---~~~~~~-------~~~~l~~L~~L~l~~n~~ 137 (452)
....+..++.+++|+|.+... +...+.+.++|+..++++-.- ...+|. ++..+++|++++|+.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 355678899999999988643 344566778888888876421 112222 233444555555555555
Q ss_pred cccCchHH---hhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceec-
Q 043765 138 SGELPETI---CNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGE- 213 (452)
Q Consensus 138 ~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~- 213 (452)
....+..+ .+.+..|++|++.+|.+.-.-...++ ..|..|. .....+.-+.|+.+...+|++...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence 43333222 12234444444444443311000000 0111110 112345568999999999987632
Q ss_pred ---CCcccCCCCCCCEEEccCCccccc----ccccccCCCCccEEeccCCcCcccCC---hhhhcCCCCCcEEeccccce
Q 043765 214 ---IPLEVGNLRNQDTLWLGSNNLVGI----VLSTIFNKSAVKEIDLFNNSLSGNLP---SRTDLALPNIDYLGLAINRF 283 (452)
Q Consensus 214 ---~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~l 283 (452)
+...|...+.|+.+.++.|.|... ....+..+++|+.|++.+|.++..-. ......+++|+.+++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 334567789999999999988632 34567799999999999998863221 23334788999999999988
Q ss_pred eecCCcc----c-cCCCCCcEEEeeCccccee----CCccccCchhHHHh-hcCCCC
Q 043765 284 SGTIPSF----I-TNASNLTILEMGLNSFSGF----IPNKIGNLRTLQTA-LSNNPL 330 (452)
Q Consensus 284 ~~~~~~~----l-~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~~-~~~~~~ 330 (452)
...-..+ + ...|.|+.+.+.+|.++.. +...+...+.|.++ +..|.+
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7543222 2 4578999999999988643 22344456667666 666766
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=2.6e-11 Score=117.20 Aligned_cols=202 Identities=31% Similarity=0.444 Sum_probs=157.0
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCC-CCCEEEccCccCCccCCccccCCCCCCEEEcc
Q 043765 104 KFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLP-NLKALLLNNNMIHGKIPSILSKCKQLQQLNLG 182 (452)
Q Consensus 104 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 182 (452)
..+++..+.+.. ....+..+..++.|++.+|.++ .++..... .. +|++|++++|.+. .+|..+..+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred ceeecccccccc-CchhhhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccC
Confidence 368888887742 2234556688999999999998 88877765 53 8999999999988 555668899999999999
Q ss_pred CccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccC
Q 043765 183 LNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNL 262 (452)
Q Consensus 183 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 262 (452)
+|++. .+|...+..+.|+.|++++|++. .+|........|+++.+++|..... +..+.++..+..+.+.+|++. ..
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceee-ec
Confidence 99998 56655557899999999999998 6777666777899999999964333 245677788888888888876 33
Q ss_pred ChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCcccc
Q 043765 263 PSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIG 316 (452)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 316 (452)
+.... .+++++.|+++.|.++.... +....+++.+++++|.+....+....
T Consensus 248 ~~~~~-~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 248 PESIG-NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred cchhc-cccccceecccccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence 44444 77889999999999985443 88899999999999988866665443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=3e-11 Score=100.31 Aligned_cols=128 Identities=29% Similarity=0.296 Sum_probs=45.8
Q ss_pred CCCCCCCCEEeCCCCcCCCcCChhhh-CCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCC
Q 043765 73 LGNLSSLVTLDLSQNKLSGDIPSSIF-TMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPN 151 (452)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 151 (452)
+.+...+++|+|++|.|+.. . .+. .+.+|+.|++++|.+... ..+..+++|++|++++|.++ .+.+.+...+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 44555778888888888743 2 344 567888888888888743 24667888888888888888 666555444888
Q ss_pred CCEEEccCccCCccC-CccccCCCCCCEEEccCccccccCCC----CccCCCCccEEEee
Q 043765 152 LKALLLNNNMIHGKI-PSILSKCKQLQQLNLGLNDLSGAIPK----EIGNFTSLQKISLI 206 (452)
Q Consensus 152 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~ 206 (452)
|++|++++|++...- -..+..+++|+.|++.+|+++.. +. .+..+|+|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 999999888886321 13466778888888888877632 21 23445666666543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=1.9e-11 Score=106.20 Aligned_cols=225 Identities=18% Similarity=0.189 Sum_probs=126.3
Q ss_pred hcCCCCCEEEccCccC--------CccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCccc
Q 043765 147 NYLPNLKALLLNNNMI--------HGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEV 218 (452)
Q Consensus 147 ~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 218 (452)
..+.+|.+|..++..- ...+|-.+.-+.+|..+.++.+.-. .+.+....-|.|+++.+.+..+. ..|..+
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~ 256 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLL 256 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-cccccc
Confidence 3356777777765421 1122333444566777777666543 22222333466777776655443 111111
Q ss_pred CCCCCCCEEEccC-CcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCC
Q 043765 219 GNLRNQDTLWLGS-NNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNL 297 (452)
Q Consensus 219 ~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 297 (452)
....+.-..... .-..|........++.|+++++++|.|+ .+.+... -.|.++.|+++.|++.... .+..+++|
T Consensus 257 -pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L 331 (490)
T KOG1259|consen 257 -PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQL 331 (490)
T ss_pred -chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccc
Confidence 111111111111 1112222223334567888888888886 6666555 6788888888888887432 37778888
Q ss_pred cEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCC
Q 043765 298 TILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGN 377 (452)
Q Consensus 298 ~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 377 (452)
+.||+++|.++.. .. |-..+. ++++|.|+.|.+. .+. .+..+-+|+.||+++|
T Consensus 332 ~~LDLS~N~Ls~~--------~G----------------wh~KLG-NIKtL~La~N~iE-~LS-GL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 332 QLLDLSGNLLAEC--------VG----------------WHLKLG-NIKTLKLAQNKIE-TLS-GLRKLYSLVNLDLSSN 384 (490)
T ss_pred eEeecccchhHhh--------hh----------------hHhhhc-CEeeeehhhhhHh-hhh-hhHhhhhheecccccc
Confidence 8888888876521 10 001122 7778888887766 222 2445667788888888
Q ss_pred cCCcc-cchhccCCCccceeecccCcccc
Q 043765 378 ELTGP-VLVTFDRLQNLQGLFLSSNKLAG 405 (452)
Q Consensus 378 ~i~~~-~~~~~~~~~~L~~L~l~~n~i~~ 405 (452)
+|... -...++++|.|+.+.+.+|++.+
T Consensus 385 ~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 385 QIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred chhhHHHhcccccccHHHHHhhcCCCccc
Confidence 77652 23356677777777777777764
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.2e-12 Score=114.99 Aligned_cols=184 Identities=21% Similarity=0.233 Sum_probs=94.6
Q ss_pred CCCCCCEEeCCCCcCCCcCC-hhhhCCCCCCEEeCCCCcCcc--cCCccccCCCCCCEEECcCCCCcccCchHHhhcCCC
Q 043765 75 NLSSLVTLDLSQNKLSGDIP-SSIFTMHTLKFLYFSDNQLSG--SLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPN 151 (452)
Q Consensus 75 ~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 151 (452)
+++.|+.+.|.+..+..... .....+++++.|||+.|-+.. .+......+++|+.|+++.|.+...........+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45666777776665542111 345566777777777765542 122334566666666666666643222222223556
Q ss_pred CCEEEccCccCCcc-CCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceec-CCcccCCCCCCCEEEc
Q 043765 152 LKALLLNNNMIHGK-IPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGE-IPLEVGNLRNQDTLWL 229 (452)
Q Consensus 152 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l 229 (452)
|+.|.+++|.++.. +......+++|+.|++.+|.....-......+..|++|++++|.+-.. .....+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 66666666666521 112234556666666666632112222334455666666666654411 1133455566666666
Q ss_pred cCCcccccccccc------cCCCCccEEeccCCcC
Q 043765 230 GSNNLVGIVLSTI------FNKSAVKEIDLFNNSL 258 (452)
Q Consensus 230 ~~~~~~~~~~~~l------~~~~~L~~L~l~~n~~ 258 (452)
+.+++..+..... ...++|+.|++..|++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 6666554322111 2344555555555555
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=7.6e-13 Score=124.14 Aligned_cols=172 Identities=30% Similarity=0.445 Sum_probs=141.5
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
..|++.|++. ++|..+..|..|+.+.+..|.+. .+|.++.++..|.++|++.|++. .+|..+..| -|+.|-+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCc
Confidence 6889999887 57877888888999999999888 67888999999999999999887 566555554 48888899999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .+|+.+. ..+.|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|++. .+|-
T Consensus 155 l~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 155 LT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred cc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecch
Confidence 88 8888888 4888999999999887 66777888899999999998887 566666643 5788899999887 7888
Q ss_pred ccCCCCCCCEEEccCCcccccc
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIV 238 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~ 238 (452)
.|.+++.|++|.+.+|.+...+
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhhhheeeeeccCCCCCCh
Confidence 8889999999999888887543
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.09 E-value=3.4e-10 Score=114.59 Aligned_cols=108 Identities=25% Similarity=0.363 Sum_probs=77.1
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEc
Q 043765 102 TLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNL 181 (452)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 181 (452)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.|.+|..+.. +++|++|++++|.+.+.+|..++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~-l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3667777777777777777777777777777777777777776665 777777777777777777777777777777777
Q ss_pred cCccccccCCCCccCC-CCccEEEeecccc
Q 043765 182 GLNDLSGAIPKEIGNF-TSLQKISLIYNKL 210 (452)
Q Consensus 182 ~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~ 210 (452)
++|.+++.+|..++.. .++..+++.+|..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcc
Confidence 7777777777666543 3556666666653
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.2e-11 Score=112.60 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=30.0
Q ss_pred CCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccc
Q 043765 245 KSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 245 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
++.|+.|.++.|.++..-...+...+|+++.|++..|..-.........+..|++|||++|.+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 3445555555555543222333335555555655555322122222334455555555555543
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=1.7e-10 Score=119.48 Aligned_cols=126 Identities=21% Similarity=0.297 Sum_probs=62.0
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC--CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCE
Q 043765 101 HTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR--FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQ 178 (452)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 178 (452)
...|+..+.+|.+. .++... ..+.|+.|-+..|. +. .++..++..++.|++||+++|.--+.+|..++.+-+||+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 44455555555443 122211 22345555555554 22 445555544555555555555444455555555555555
Q ss_pred EEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEcc
Q 043765 179 LNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLG 230 (452)
Q Consensus 179 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 230 (452)
|++++..+. .+|..++++.+|.+|++..+.....++.....+.+|++|.+.
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 555555554 455555555555555555544333333334445555555443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.4e-10 Score=95.03 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=27.7
Q ss_pred CCCCEEEccCccCCccCCcccc-CCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCccc-CCCCCCCEE
Q 043765 150 PNLKALLLNNNMIHGKIPSILS-KCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEV-GNLRNQDTL 227 (452)
Q Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L 227 (452)
.++++|++.+|.++.. +.++ .+.+|+.|++++|.+... +.+..++.|++|++++|.++ .+...+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 3566666666666532 2233 355666666666666532 23555666666666666665 232222 235666666
Q ss_pred EccCCccccccc-ccccCCCCccEEeccCCcCc
Q 043765 228 WLGSNNLVGIVL-STIFNKSAVKEIDLFNNSLS 259 (452)
Q Consensus 228 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~ 259 (452)
++++|++..... ..+..+++|+.|++.+|++.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666654321 23445555666666655554
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=4.8e-11 Score=103.72 Aligned_cols=130 Identities=24% Similarity=0.281 Sum_probs=60.5
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEE
Q 043765 101 HTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLN 180 (452)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 180 (452)
..|+.+||++|.|+ .+.....-.+.++.|++++|.+. .+.. +.. +++|+.||+++|.++ .+..+-.++-++++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~-L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAE-LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhh-cccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 34455555555444 33344444455555555555554 2222 222 555555555555544 2223333444555555
Q ss_pred ccCccccccCCCCccCCCCccEEEeecccceec-CCcccCCCCCCCEEEccCCccccc
Q 043765 181 LGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGE-IPLEVGNLRNQDTLWLGSNNLVGI 237 (452)
Q Consensus 181 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~ 237 (452)
+++|.+... ..++++-+|..||+++|++... -...+++++.|+.+.+.+|.+.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 555554311 2344455555555555554311 112355555555555555555433
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.4e-09 Score=74.35 Aligned_cols=59 Identities=36% Similarity=0.415 Sum_probs=29.9
Q ss_pred ccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCc
Q 043765 344 SMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNK 402 (452)
Q Consensus 344 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 402 (452)
+|++|++++|++....+..|.++++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553333445555555555555555554444455555555555555544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.5e-09 Score=74.16 Aligned_cols=60 Identities=33% Similarity=0.381 Sum_probs=35.7
Q ss_pred CCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 77 SSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 77 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
|+|++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 355666666666664444556666666666666666665555556666666666665554
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=8.1e-10 Score=107.02 Aligned_cols=196 Identities=26% Similarity=0.288 Sum_probs=113.8
Q ss_pred CCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCE
Q 043765 99 TMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQ 178 (452)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 178 (452)
.+..++.+++..|.+.. +-..+..+.+|+.|++..|.+. .+...+.. +++|++|++++|.++.. ..+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~-~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSS-LVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhh-hhcchheeccccccccc--cchhhccchhh
Confidence 44555555566666653 2234556666777777777666 33332322 67777777777777643 23556666777
Q ss_pred EEccCccccccCCCCccCCCCccEEEeecccceecCCcc-cCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCc
Q 043765 179 LNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLE-VGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNS 257 (452)
Q Consensus 179 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 257 (452)
|++.+|.+... ..+..++.|+.+++++|.+...-+ . ...+..++.+++.+|.+..... +.....+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhccccc
Confidence 77777777522 234556777777777777663222 1 3566777777777777665432 2233334444666665
Q ss_pred CcccCChhhhcCCC--CCcEEeccccceeecCCccccCCCCCcEEEeeCcccc
Q 043765 258 LSGNLPSRTDLALP--NIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 258 ~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
+...-+.. ..+ +|+.+++++|++.. .+..+..+.++..+++..|.+.
T Consensus 220 i~~~~~l~---~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 220 ISKLEGLN---ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ceeccCcc---cchhHHHHHHhcccCcccc-ccccccccccccccchhhcccc
Confidence 54111111 122 36777777777763 2244666777777777777664
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=1.1e-09 Score=106.13 Aligned_cols=217 Identities=25% Similarity=0.294 Sum_probs=141.1
Q ss_pred CCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCE
Q 043765 75 NLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKA 154 (452)
Q Consensus 75 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 154 (452)
.+..++.+++..|.+.. +...+..+++|+.|++.+|.+.+. ...+..+++|++|++++|.|+ .+.. +.. ++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~-l~~-l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG-LST-LTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc-hhh-ccchhh
Confidence 45666777777777763 334467788888888888888743 333677888888888888887 3322 222 667888
Q ss_pred EEccCccCCccCCccccCCCCCCEEEccCccccccCC-CCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCc
Q 043765 155 LLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIP-KEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNN 233 (452)
Q Consensus 155 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 233 (452)
|++.+|.+... ..+..+..|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence 89998888733 346668888889999988874433 1 4677888888888887752 2334444445555777777
Q ss_pred ccccccccccCCC--CccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCccc
Q 043765 234 LVGIVLSTIFNKS--AVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSF 307 (452)
Q Consensus 234 ~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 307 (452)
++...+ +.... .|+.+++.+|.+. ..+..+. .+..+..+++..|++.... .+...+.+..+....+.+
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~-~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLE-NLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKL 289 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-ccccccc-ccccccccchhhccccccc--cccccchHHHhccCcchh
Confidence 765432 22222 3788888888776 3322222 6778888888888776432 233444444555555544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.5e-09 Score=93.13 Aligned_cols=182 Identities=17% Similarity=0.162 Sum_probs=113.6
Q ss_pred CCCEEEccCCcccc-cccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEecccc-ceeecC-CccccCCCCCcE
Q 043765 223 NQDTLWLGSNNLVG-IVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAIN-RFSGTI-PSFITNASNLTI 299 (452)
Q Consensus 223 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~-~~~l~~~~~L~~ 299 (452)
.++++|+++..++. .....+..+.+|+.|.+.++++.+.+...+. ...+|+.++++.+ .++... ...+.+|+.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46777777766652 2223355677777777777777666655554 6677777777754 343221 124678888888
Q ss_pred EEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCc---ccCcccccCCCCCCEEEccC
Q 043765 300 LEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSIS---GNIPQVISNLTNFTVLQLGG 376 (452)
Q Consensus 300 L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~~~~L~~L~l~~ 376 (452)
|+++.|.+....- ...+.+....|..|+++++.-. ..+..-...|++|.+||+++
T Consensus 265 LNlsWc~l~~~~V----------------------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 265 LNLSWCFLFTEKV----------------------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred cCchHhhccchhh----------------------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 8888876643211 1112223337778888876422 12222345788889999988
Q ss_pred C-cCCcccchhccCCCccceeecccCcccccChhh---hcCCCCCCEEeCcCCcccc
Q 043765 377 N-ELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDD---LCRLHRLDTLILDGNEFSE 429 (452)
Q Consensus 377 n-~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~---~~~l~~L~~L~l~~n~~~~ 429 (452)
| .++......|.+++.|++|.++.|.. .+|+. +...|+|..|++.+|--.+
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCch
Confidence 7 34444445566788888888888864 45554 4567888888888885543
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=2.8e-08 Score=86.67 Aligned_cols=236 Identities=15% Similarity=0.128 Sum_probs=125.8
Q ss_pred ccCCcCCCCCCCCCEEeCCCCcCCCc--CChhhhCCCCCCEEeCCCCcCcc--cCCccccCCCCCCEEECcCCCCcccCc
Q 043765 67 GTIPPQLGNLSSLVTLDLSQNKLSGD--IPSSIFTMHTLKFLYFSDNQLSG--SLSSFTFNMSSMLVSDLSTNRFSGELP 142 (452)
Q Consensus 67 ~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~ 142 (452)
|..+-.+.....++.+.+.++.+-.+ ....-..+.+++.+||.+|.|++ .+...+.+++.|+.|+++.|++...|-
T Consensus 35 g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~ 114 (418)
T KOG2982|consen 35 GLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK 114 (418)
T ss_pred ccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc
Confidence 33343344444555666666655422 11112346788888888888863 344456788888888888888764332
Q ss_pred hHHhhcCCCCCEEEccCccCCccC-CccccCCCCCCEEEccCccccc--cCCCCccC-CCCccEEEeeccccee--cCCc
Q 043765 143 ETICNYLPNLKALLLNNNMIHGKI-PSILSKCKQLQQLNLGLNDLSG--AIPKEIGN-FTSLQKISLIYNKLHG--EIPL 216 (452)
Q Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~-l~~L~~L~l~~n~~~~--~~~~ 216 (452)
..-.. ..+|++|-+.+..+.... ...+..++.++.|.++.|.+.. ...+.... -+.+++|+...|.... ....
T Consensus 115 ~lp~p-~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~ 193 (418)
T KOG2982|consen 115 SLPLP-LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK 193 (418)
T ss_pred cCccc-ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh
Confidence 22112 567888888887766432 2345677777888887774321 11112222 2355666655554320 0111
Q ss_pred ccCCCCCCCEEEccCCcccccc-cccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecC----Cc--
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIV-LSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTI----PS-- 289 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~-- 289 (452)
.-..++++..+.+..|.+.... .......+.+.-|+++.+++.+-........++.|.-|.++.+.+.... +.
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l 273 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFL 273 (418)
T ss_pred HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEE
Confidence 1223455666666666554322 2233344555566666666642222222236666777776666554221 11
Q ss_pred cccCCCCCcEEEee
Q 043765 290 FITNASNLTILEMG 303 (452)
Q Consensus 290 ~l~~~~~L~~L~L~ 303 (452)
.++.+++++.|+=+
T Consensus 274 lIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 274 LIARLTKVQVLNGS 287 (418)
T ss_pred EEeeccceEEecCc
Confidence 24566666666543
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=5.6e-08 Score=84.88 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=14.9
Q ss_pred CCCEEEccCCcCCc-ccchhccCCCccceeecccCccc
Q 043765 368 NFTVLQLGGNELTG-PVLVTFDRLQNLQGLFLSSNKLA 404 (452)
Q Consensus 368 ~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~ 404 (452)
.+-.|+++.++|.. ...+.+..++.|..|.++++++.
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 33344444444432 12223334444444444444443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=6.2e-09 Score=101.03 Aligned_cols=158 Identities=26% Similarity=0.279 Sum_probs=72.2
Q ss_pred ChhhhCCCCCCEEeCCCCcCccc---CC--cc-----------------------cc---CCCCCCEEECcCCCCcccCc
Q 043765 94 PSSIFTMHTLKFLYFSDNQLSGS---LS--SF-----------------------TF---NMSSMLVSDLSTNRFSGELP 142 (452)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~---~~--~~-----------------------~~---~l~~L~~L~l~~n~~~~~~~ 142 (452)
|-.++.+..||+|.+.++.+... .+ .. +. ....|...+.++|.+. .+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 66778888999999988876520 00 00 00 0112333344444443 222
Q ss_pred hHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCC
Q 043765 143 ETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLR 222 (452)
Q Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 222 (452)
..+-- ++.++.|++++|+++.. +.+..+++|++||+++|.+. .+|..-..-.+|+.|.+++|.++. + ..+.+++
T Consensus 181 ~SLql-l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQL-LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-L-RGIENLK 254 (1096)
T ss_pred HHHHH-HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh-h-hhHHhhh
Confidence 22222 44555555555555422 23445555555555555554 233211111235555555555441 1 2344455
Q ss_pred CCCEEEccCCcccccc-cccccCCCCccEEeccCCcC
Q 043765 223 NQDTLWLGSNNLVGIV-LSTIFNKSAVKEIDLFNNSL 258 (452)
Q Consensus 223 ~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~ 258 (452)
+|+.||+++|-+.+.. ...+..+..|+.|.+.+|++
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555555555444321 12233344455555555544
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=5.4e-08 Score=83.85 Aligned_cols=239 Identities=17% Similarity=0.140 Sum_probs=117.2
Q ss_pred eEEeCCCCcccc----CCcCCCCCCCCCEEeCCCCcCC---CcCC-------hhhhCCCCCCEEeCCCCcCcccCCcc--
Q 043765 57 SLNISSFNLQGT----IPPQLGNLSSLVTLDLSQNKLS---GDIP-------SSIFTMHTLKFLYFSDNQLSGSLSSF-- 120 (452)
Q Consensus 57 ~l~l~~~~~~~~----~~~~~~~l~~L~~L~ls~n~l~---~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~-- 120 (452)
.++||||.+... +...+++-.+|+..+++.--.. ..++ .++.+|++|+..+||.|.+....|..
T Consensus 34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~ 113 (388)
T COG5238 34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG 113 (388)
T ss_pred EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence 567777766543 2233445566666666543211 1122 23445666666666666665444432
Q ss_pred --ccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCC-----C
Q 043765 121 --TFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPK-----E 193 (452)
Q Consensus 121 --~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~ 193 (452)
++.-..|+.|.+++|.+....-..+++.+..| ..| .-..+-+.|++..+..|.+.. .+. .
T Consensus 114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l-----a~n-------KKaa~kp~Le~vicgrNRlen-gs~~~~a~~ 180 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL-----AYN-------KKAADKPKLEVVICGRNRLEN-GSKELSAAL 180 (388)
T ss_pred HHHhcCCCceeEEeecCCCCccchhHHHHHHHHH-----HHH-------hhhccCCCceEEEeccchhcc-CcHHHHHHH
Confidence 33445555555555554311111111100000 000 001233556666666666531 111 1
Q ss_pred ccCCCCccEEEeecccceecC-----CcccCCCCCCCEEEccCCccccc----ccccccCCCCccEEeccCCcCcccCCh
Q 043765 194 IGNFTSLQKISLIYNKLHGEI-----PLEVGNLRNQDTLWLGSNNLVGI----VLSTIFNKSAVKEIDLFNNSLSGNLPS 264 (452)
Q Consensus 194 ~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~ 264 (452)
+..-..|+++.+..|.+.... ...+..+..|+.|++++|-++-. ...++..++.|+.|.+.+|-++..-..
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 222246666666666654210 11223456677777777766532 233455666677777777766532222
Q ss_pred hh-----hcCCCCCcEEeccccceeecCC-c----cc--cCCCCCcEEEeeCcccc
Q 043765 265 RT-----DLALPNIDYLGLAINRFSGTIP-S----FI--TNASNLTILEMGLNSFS 308 (452)
Q Consensus 265 ~~-----~~~~~~L~~L~l~~n~l~~~~~-~----~l--~~~~~L~~L~L~~n~l~ 308 (452)
.. ....|+|..|...+|.+.+.+- . .+ .++|-|..+.+.+|.+.
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 11 1245677777777775543211 1 11 35666777777777765
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=5.3e-08 Score=83.93 Aligned_cols=217 Identities=20% Similarity=0.189 Sum_probs=127.0
Q ss_pred CCCCCCCEEeCCCCcCCCcCC----hhhhCCCCCCEEeCCCCcCc---ccCCccccCCCCCCEEECcCCCCcccCchHHh
Q 043765 74 GNLSSLVTLDLSQNKLSGDIP----SSIFTMHTLKFLYFSDNQLS---GSLSSFTFNMSSMLVSDLSTNRFSGELPETIC 146 (452)
Q Consensus 74 ~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 146 (452)
..+..++.++||+|.|..+-. ..+++-.+|+..+++.-... ..++..+. .+...+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~-----------------~Ll~aLl 89 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV-----------------MLLKALL 89 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH-----------------HHHHHHh
Confidence 346677788888887764332 23444566776666553221 11111100 0111222
Q ss_pred hcCCCCCEEEccCccCCccCCc----cccCCCCCCEEEccCccccccCC-------------CCccCCCCccEEEeeccc
Q 043765 147 NYLPNLKALLLNNNMIHGKIPS----ILSKCKQLQQLNLGLNDLSGAIP-------------KEIGNFTSLQKISLIYNK 209 (452)
Q Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~-------------~~~~~l~~L~~L~l~~n~ 209 (452)
+ ||+|+..+++.|.+....|+ .+++-+.|.+|.+.+|.+..... ....+-|.|+......|+
T Consensus 90 k-cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 K-CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred c-CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 2 55555555555555433332 23444556666666665431111 123456899999999998
Q ss_pred ceecCCc-----ccCCCCCCCEEEccCCcccccc-----cccccCCCCccEEeccCCcCcccC---ChhhhcCCCCCcEE
Q 043765 210 LHGEIPL-----EVGNLRNQDTLWLGSNNLVGIV-----LSTIFNKSAVKEIDLFNNSLSGNL---PSRTDLALPNIDYL 276 (452)
Q Consensus 210 ~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~~L~~L 276 (452)
+. ..+. .+..-..|+++.+..|.|.... ...++.+++|+.|++.+|.++-.- .......++.|+.|
T Consensus 169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 76 3332 2333468999999999887432 223456789999999999876221 12223377889999
Q ss_pred eccccceeecCCcc----c--cCCCCCcEEEeeCcccce
Q 043765 277 GLAINRFSGTIPSF----I--TNASNLTILEMGLNSFSG 309 (452)
Q Consensus 277 ~l~~n~l~~~~~~~----l--~~~~~L~~L~L~~n~l~~ 309 (452)
.+..|-++.....+ | ...|+|..|...+|...+
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 99999877533222 2 346888999888887654
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=8.9e-09 Score=89.74 Aligned_cols=176 Identities=17% Similarity=0.149 Sum_probs=85.2
Q ss_pred CCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCcc-cccc-CCCCccCCCCccEEE
Q 043765 127 MLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLND-LSGA-IPKEIGNFTSLQKIS 204 (452)
Q Consensus 127 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~ 204 (452)
|++|||++..++..--..+...+.+|+.|.+.++++...+...+.+-.+|+.++++++. ++.. ..-.+.+++.|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44555555444322222222224555555555555544444444455555555555543 2210 001234455555666
Q ss_pred eecccceecCCc-ccC-CCCCCCEEEccCCccc---ccccccccCCCCccEEeccCCc-CcccCChhhhcCCCCCcEEec
Q 043765 205 LIYNKLHGEIPL-EVG-NLRNQDTLWLGSNNLV---GIVLSTIFNKSAVKEIDLFNNS-LSGNLPSRTDLALPNIDYLGL 278 (452)
Q Consensus 205 l~~n~~~~~~~~-~~~-~l~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l 278 (452)
+++|........ .+. --+++..|+++++.-. .....-..++++|..||+++|. ++... ...+..++.|+++.+
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSL 345 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeeeh
Confidence 655554322110 111 1144555666553211 1111122467778888887763 33222 223337778888888
Q ss_pred cccceeecCCc---cccCCCCCcEEEeeCc
Q 043765 279 AINRFSGTIPS---FITNASNLTILEMGLN 305 (452)
Q Consensus 279 ~~n~l~~~~~~---~l~~~~~L~~L~L~~n 305 (452)
+.|.. ++|. .+...|.|.+|++.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77753 3443 2467788888887665
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=2.1e-07 Score=90.70 Aligned_cols=106 Identities=25% Similarity=0.143 Sum_probs=69.6
Q ss_pred hhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCC
Q 043765 337 SIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHR 416 (452)
Q Consensus 337 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~ 416 (452)
.+.-++ .+++|+|++|+++... .+..|+.|++|||++|.+....-.....|. |+.|.+++|.++.. .++.++.+
T Consensus 182 SLqll~-ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLP-ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHH-HhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence 333344 7788888888887433 566778888888888877754444444555 88888888877743 35677788
Q ss_pred CCEEeCcCCcccccC-CccccCCCCCCceeccc
Q 043765 417 LDTLILDGNEFSESI-PTCLGNLTSLEGSLLNV 448 (452)
Q Consensus 417 L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~ 448 (452)
|+.||+++|-+.+.- -+-+..+.+|+.|.|..
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 888888888776622 12334455666666654
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.98 E-value=2.7e-07 Score=71.34 Aligned_cols=102 Identities=24% Similarity=0.257 Sum_probs=68.9
Q ss_pred eEEeCCCCccccCCcC---CCCCCCCCEEeCCCCcCCCcCChhhh-CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEC
Q 043765 57 SLNISSFNLQGTIPPQ---LGNLSSLVTLDLSQNKLSGDIPSSIF-TMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDL 132 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 132 (452)
.++|+.|.+-. +++. +.+..+|+..++++|.+. .+|..|. +.+.++++++++|.+. .+|..+..++.|+.|++
T Consensus 31 ~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 57788887652 2332 345567777888888887 4555554 3457788888888877 45555777777777777
Q ss_pred cCCCCcccCchHHhhcCCCCCEEEccCccCC
Q 043765 133 STNRFSGELPETICNYLPNLKALLLNNNMIH 163 (452)
Q Consensus 133 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (452)
+.|.+. ..|..++. +.++-.|+..+|...
T Consensus 108 ~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAP-LIKLDMLDSPENARA 136 (177)
T ss_pred ccCccc-cchHHHHH-HHhHHHhcCCCCccc
Confidence 777776 66666666 666777777666654
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.98 E-value=1.6e-05 Score=65.99 Aligned_cols=83 Identities=27% Similarity=0.359 Sum_probs=47.9
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccC-CccccCCCCCCEEE
Q 043765 102 TLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKI-PSILSKCKQLQQLN 180 (452)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 180 (452)
+...+||++|.+... ..|.+++.|..|.+++|+|+ .+...+...+++|+.|.+.+|++.... -+.+..|++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 445556666655421 23445566666666666666 555556555777888888887766211 02244566666666
Q ss_pred ccCcccc
Q 043765 181 LGLNDLS 187 (452)
Q Consensus 181 l~~n~~~ 187 (452)
+-+|+++
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 6666554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.1e-05 Score=50.36 Aligned_cols=36 Identities=36% Similarity=0.622 Sum_probs=14.0
Q ss_pred CCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCc
Q 043765 78 SLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLS 114 (452)
Q Consensus 78 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 114 (452)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 22333444444444444444433
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=9.5e-07 Score=68.37 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=74.6
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++|++|.+....+..-..++.++.|++++|.+. .+|..+..++.||.+++++|.+. ..|..+..+.++-+|+..+|.
T Consensus 57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred EEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 6899999998644443466789999999999998 77888999999999999999998 667777779999999999999
Q ss_pred CcccCchHHh
Q 043765 137 FSGELPETIC 146 (452)
Q Consensus 137 ~~~~~~~~~~ 146 (452)
+. .+|..++
T Consensus 135 ~~-eid~dl~ 143 (177)
T KOG4579|consen 135 RA-EIDVDLF 143 (177)
T ss_pred cc-cCcHHHh
Confidence 88 7777755
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.4e-05 Score=49.80 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=31.2
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCc
Q 043765 101 HTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELP 142 (452)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 142 (452)
++|++|++++|+|+ .+|..+++|++|++|++++|+++ +++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 47899999999998 45556889999999999999987 444
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=3.3e-06 Score=85.77 Aligned_cols=152 Identities=15% Similarity=0.240 Sum_probs=82.0
Q ss_pred CCCCEEECcCCCC-cccCchHHhhcCCCCCEEEccCccCCc-cCCccccCCCCCCEEEccCccccccCCCCccCCCCccE
Q 043765 125 SSMLVSDLSTNRF-SGELPETICNYLPNLKALLLNNNMIHG-KIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQK 202 (452)
Q Consensus 125 ~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 202 (452)
.+|++|++++... ...-|..++..+|.|+.|.+++-.+.. .......++++|..||++++.++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 3455556555432 223344455556777777776654431 1122334666777777777666522 45566666666
Q ss_pred EEeeccccee-cCCcccCCCCCCCEEEccCCcccccc------cccccCCCCccEEeccCCcCcccCChhhhcCCCCCcE
Q 043765 203 ISLIYNKLHG-EIPLEVGNLRNQDTLWLGSNNLVGIV------LSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDY 275 (452)
Q Consensus 203 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 275 (452)
|.+.+-.+.. ..-..+..+++|+.||+|........ -+.-..+|.|+.||.+++.+...+.+......|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 6666544431 11124456677777777654433221 1122246677777777776665555555545666665
Q ss_pred Eec
Q 043765 276 LGL 278 (452)
Q Consensus 276 L~l 278 (452)
+.+
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 543
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.79 E-value=6.4e-05 Score=59.98 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=45.0
Q ss_pred cCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCC
Q 043765 71 PQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLP 150 (452)
Q Consensus 71 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 150 (452)
.+|..+++|+.+.+.. .+......+|.++++|+.+.+..+ +.......|.++.+++.+.+.. .+. .++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 3456666666666653 344444555666666666666553 4434444555555566666544 222 33444444455
Q ss_pred CCCEEEccCccCCccCCccccCCCCCCEEEccC
Q 043765 151 NLKALLLNNNMIHGKIPSILSKCKQLQQLNLGL 183 (452)
Q Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 183 (452)
+++.+++..+ +.......|.++ +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5555555443 332233344444 555555543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=5.6e-05 Score=62.79 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=44.2
Q ss_pred CCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecC-CcccCCCCCCCEEE
Q 043765 150 PNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEI-PLEVGNLRNQDTLW 228 (452)
Q Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~ 228 (452)
.+...+|+++|.+... +.|..++.|.+|.+.+|.++.+.|.--..++.|+.|.+.+|.+.... -..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3444555555554311 22444455555555555555443333333444555555555443110 01223344444444
Q ss_pred ccCCcccccc---cccccCCCCccEEeccC
Q 043765 229 LGSNNLVGIV---LSTIFNKSAVKEIDLFN 255 (452)
Q Consensus 229 l~~~~~~~~~---~~~l~~~~~L~~L~l~~ 255 (452)
+-+|.+.... ...+..+++|+.||+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 4444443221 12233444555555443
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.75 E-value=0.00011 Score=58.49 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=11.0
Q ss_pred CCCCCEEEccCccCCccCCccccCCCCCCEEEcc
Q 043765 149 LPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLG 182 (452)
Q Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 182 (452)
+++|+.+.+.++ +.......|.++.+++.+.+.
T Consensus 34 ~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 34 CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred cccccccccccc-ccccceeeeeccccccccccc
Confidence 334444444432 222222334444444444443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00024 Score=66.92 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=24.4
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDN 111 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 111 (452)
.|++++|.++. +|. + .++|++|.++++.--..+|..+ .++|++|++++|
T Consensus 56 ~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 56 RLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred EEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 56666665553 231 1 1346666666532222444333 145666666665
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.55 E-value=2.4e-06 Score=78.38 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=15.4
Q ss_pred CCCEEeCCCCcCCCc--CChhhhCCCCCCEEeCCCCc
Q 043765 78 SLVTLDLSQNKLSGD--IPSSIFTMHTLKFLYFSDNQ 112 (452)
Q Consensus 78 ~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~ 112 (452)
.|+.|.+.++.=.+. .-..-..++++++|.+.++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence 455555555432211 11223345555555555543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=4.1e-05 Score=78.01 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=103.8
Q ss_pred CCCCEEeCCCCcCc-ccCCccc-cCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCE
Q 043765 101 HTLKFLYFSDNQLS-GSLSSFT-FNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQ 178 (452)
Q Consensus 101 ~~L~~L~l~~n~l~-~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 178 (452)
.+|++||+++...- ...+..+ .-+|+|+.|.+.+-.+..+--..+++.+|+|..||++++.++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 58999999886543 2233333 35899999999998776444556777799999999999998743 66889999999
Q ss_pred EEccCccccc-cCCCCccCCCCccEEEeecccceecC------CcccCCCCCCCEEEccCCcccccccccc-cCCCCccE
Q 043765 179 LNLGLNDLSG-AIPKEIGNFTSLQKISLIYNKLHGEI------PLEVGNLRNQDTLWLGSNNLVGIVLSTI-FNKSAVKE 250 (452)
Q Consensus 179 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~ 250 (452)
|.+.+=.+.. ..-..+..+++|+.||+|........ -+.-..+|.|+.||.+++.+.+...+.+ ...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9988766642 11124567899999999987644221 1122347899999999888765443322 23445554
Q ss_pred Eec
Q 043765 251 IDL 253 (452)
Q Consensus 251 L~l 253 (452)
+.+
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.44 E-value=0.00094 Score=63.00 Aligned_cols=134 Identities=13% Similarity=0.168 Sum_probs=69.0
Q ss_pred CCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC-CCcccCchHHhhcCCC
Q 043765 73 LGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN-RFSGELPETICNYLPN 151 (452)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~ 151 (452)
+..+.++++|++++|.++ .+|. --.+|++|.++++.--..+|..+ ..+|++|++++| .+. .+| ..
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------cc
Confidence 344678888888888777 4451 12368888887754333445433 246777777776 332 333 34
Q ss_pred CCEEEccCccCC--ccCCccccCCCCCCEEEccCcccc--ccCCCCccCC-CCccEEEeecccceecCCcccCCCCCCCE
Q 043765 152 LKALLLNNNMIH--GKIPSILSKCKQLQQLNLGLNDLS--GAIPKEIGNF-TSLQKISLIYNKLHGEIPLEVGNLRNQDT 226 (452)
Q Consensus 152 L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 226 (452)
|+.|++.++... ..+|. +|+.|.+.++... ...|. .+ ++|++|++++|... ..|..+. ..|+.
T Consensus 114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~ 181 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQS 181 (426)
T ss_pred cceEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcE
Confidence 666666554432 12222 3455555332211 01111 12 35667777666543 2333222 45666
Q ss_pred EEccCC
Q 043765 227 LWLGSN 232 (452)
Q Consensus 227 L~l~~~ 232 (452)
|.++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 666544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.00021 Score=62.07 Aligned_cols=99 Identities=24% Similarity=0.244 Sum_probs=73.0
Q ss_pred ccceeecccccCcccCcccccCCCCCCEEEccCC--cCCcccchhccCCCccceeecccCcccccChh---hhcCCCCCC
Q 043765 344 SMERLYIFNCSISGNIPQVISNLTNFTVLQLGGN--ELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPD---DLCRLHRLD 418 (452)
Q Consensus 344 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n--~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~---~~~~l~~L~ 418 (452)
.|+.+++.++.++ .+ ..|..+++|+.|+++.| .+.+..+.....+|+|+.+++++|+|.. ++ .+..+.+|.
T Consensus 44 ~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 6777777777777 32 23567889999999999 6776666666778999999999999874 22 345677888
Q ss_pred EEeCcCCcccccCC---ccccCCCCCCceec
Q 043765 419 TLILDGNEFSESIP---TCLGNLTSLEGSLL 446 (452)
Q Consensus 419 ~L~l~~n~~~~~~~---~~~~~~~~L~~L~l 446 (452)
.|++.+|+.+..-- ..|.-+++|++||-
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 99999998876211 25667788888553
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=5.3e-05 Score=66.08 Aligned_cols=98 Identities=22% Similarity=0.306 Sum_probs=77.0
Q ss_pred ccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccCh-hhhcCCCCCCEEeC
Q 043765 344 SMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIP-DDLCRLHRLDTLIL 422 (452)
Q Consensus 344 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l 422 (452)
+.+.|+.++|+++++. ....++.|+.|.|+-|+|+..- .+..|..|++|+|..|.|.+.-. .-+.++|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 6788999999998542 2347899999999999998644 45689999999999999884321 24578999999999
Q ss_pred cCCcccccCCc-----cccCCCCCCcee
Q 043765 423 DGNEFSESIPT-----CLGNLTSLEGSL 445 (452)
Q Consensus 423 ~~n~~~~~~~~-----~~~~~~~L~~L~ 445 (452)
..|+-.+.-+. .+.-+++|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998876543 566688888865
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.93 E-value=2.9e-05 Score=71.46 Aligned_cols=274 Identities=16% Similarity=0.047 Sum_probs=130.8
Q ss_pred CCCEEEccCccCCccCC--ccccCCCCCCEEEccCcccc-ccCCCCc-cCCCCccEEEeeccc-ceecC-CcccCCCCCC
Q 043765 151 NLKALLLNNNMIHGKIP--SILSKCKQLQQLNLGLNDLS-GAIPKEI-GNFTSLQKISLIYNK-LHGEI-PLEVGNLRNQ 224 (452)
Q Consensus 151 ~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~-~~~~~~~-~~l~~L~~L~l~~n~-~~~~~-~~~~~~l~~L 224 (452)
.|+.|.+.++.-.+.-+ ....+++++++|.+.++... ...-..+ ..+++|+.|++..|. ++... ......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 47777777765332211 22356777777777777532 1111111 345677777776632 22111 1123456777
Q ss_pred CEEEccCCc-cccccc-ccccCCCCccEEeccCCcCc-ccCChhhhcCCCCCcEEeccccceeecCC--ccccCCCCCcE
Q 043765 225 DTLWLGSNN-LVGIVL-STIFNKSAVKEIDLFNNSLS-GNLPSRTDLALPNIDYLGLAINRFSGTIP--SFITNASNLTI 299 (452)
Q Consensus 225 ~~L~l~~~~-~~~~~~-~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~l~~~~~L~~ 299 (452)
++++++++. +++..- ....++..++++...+|.-. .+.-.......+.+..+++..+..-.... ..=..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 777777654 222111 12334555666655554211 01111122244445555544442211111 11134666677
Q ss_pred EEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCc-ccCccc-ccCCCCCCEEEccCC
Q 043765 300 LEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSIS-GNIPQV-ISNLTNFTVLQLGGN 377 (452)
Q Consensus 300 L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~-~~~~~~-~~~~~~L~~L~l~~n 377 (452)
++.+++...+..+ +..| ..+.+ +|+.+.+..|+-. ..-... -.+++.|+.+++..+
T Consensus 299 l~~s~~t~~~d~~-----l~aL----------------g~~~~-~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 299 LCYSSCTDITDEV-----LWAL----------------GQHCH-NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hcccCCCCCchHH-----HHHH----------------hcCCC-ceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 7766653211100 0001 11222 6777777776532 111111 135677777777766
Q ss_pred cCCc--ccchhccCCCccceeecccCcc-cccC----hhhhcCCCCCCEEeCcCCcccc-cCCccccCCCCCCceec
Q 043765 378 ELTG--PVLVTFDRLQNLQGLFLSSNKL-AGSI----PDDLCRLHRLDTLILDGNEFSE-SIPTCLGNLTSLEGSLL 446 (452)
Q Consensus 378 ~i~~--~~~~~~~~~~~L~~L~l~~n~i-~~~~----~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l 446 (452)
.... .+...-.+|+.|+.+.+++|.. ++.. ...-+.+..|+.+.+++|+.+. ..-+.+..|++|+.+++
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 4321 1222234577777777776653 2221 1122345667777777775543 34455666677776554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00067 Score=58.94 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=39.0
Q ss_pred CCCCEEEccCccccccCCCCccCCCCccEEEeecc--cceecCCcccCCCCCCCEEEccCCccccc-ccccccCCCCccE
Q 043765 174 KQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYN--KLHGEIPLEVGNLRNQDTLWLGSNNLVGI-VLSTIFNKSAVKE 250 (452)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~ 250 (452)
..|+.+.+.+..++.. ..+..+++|++|.++.| ++.+.+......+++|+++++++|++..+ ....+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3444444444444311 23444555555555555 33333333334445555555555555421 0112334455566
Q ss_pred EeccCCcCc
Q 043765 251 IDLFNNSLS 259 (452)
Q Consensus 251 L~l~~n~~~ 259 (452)
|++.+|..+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 666666544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=5.7e-05 Score=65.89 Aligned_cols=62 Identities=26% Similarity=0.248 Sum_probs=26.7
Q ss_pred CCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCC-ccccCCCCCCEEECcCCCCc
Q 043765 75 NLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLS-SFTFNMSSMLVSDLSTNRFS 138 (452)
Q Consensus 75 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~ 138 (452)
+++.|++|.||-|+|+..- .+..|++|+.|+|..|.|.+.-. ..+.++++|+.|.|..|+-.
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 4455555555555544321 24444555555555554442100 12334444444444444433
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.64 E-value=0.00015 Score=72.14 Aligned_cols=130 Identities=19% Similarity=0.159 Sum_probs=60.9
Q ss_pred CCCCCEEEccCcccccc--CCCCccCCCCccEEEeecc-cceec----CCcccCCCCCCCEEEccCCc-ccccccccccC
Q 043765 173 CKQLQQLNLGLNDLSGA--IPKEIGNFTSLQKISLIYN-KLHGE----IPLEVGNLRNQDTLWLGSNN-LVGIVLSTIFN 244 (452)
Q Consensus 173 l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~ 244 (452)
++.|+.+.+.++.-... .......++.|++|+++++ ..... .......+++++.++++.+. ++...-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566665555532211 1122344556666666542 11000 01123344566666666655 44333333332
Q ss_pred -CCCccEEeccCCc-CcccCChhhhcCCCCCcEEeccccceeec--CCccccCCCCCcEEEe
Q 043765 245 -KSAVKEIDLFNNS-LSGNLPSRTDLALPNIDYLGLAINRFSGT--IPSFITNASNLTILEM 302 (452)
Q Consensus 245 -~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~L 302 (452)
+++|+.|.+.++. +++.--..+...+++|++|+++.+..... ......++++++.+.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 5666666666555 44333344444666666666665544311 1122334555555443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.02 E-value=0.0017 Score=64.50 Aligned_cols=112 Identities=22% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCCCCCEEeCCCCcCCCc--CChhhhCCCCCCEEeCCCC-cCccc----CCccccCCCCCCEEECcCCC-CcccCchHHh
Q 043765 75 NLSSLVTLDLSQNKLSGD--IPSSIFTMHTLKFLYFSDN-QLSGS----LSSFTFNMSSMLVSDLSTNR-FSGELPETIC 146 (452)
Q Consensus 75 ~l~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~ 146 (452)
.++.|+.+.+.++.-... .......+++|+.|+++.+ ..... .......+.+|+.|+++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467888888877633222 2344567788888888763 11111 11234456788888888877 5544445555
Q ss_pred hcCCCCCEEEccCcc-CCcc-CCccccCCCCCCEEEccCccc
Q 043765 147 NYLPNLKALLLNNNM-IHGK-IPSILSKCKQLQQLNLGLNDL 186 (452)
Q Consensus 147 ~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~~ 186 (452)
..+++|++|.+.++. ++.. +-.....++.|++|++++|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 557888888877666 3321 112335677788888887764
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.98 E-value=0.011 Score=30.45 Aligned_cols=11 Identities=45% Similarity=0.395 Sum_probs=4.2
Q ss_pred ceeecccCccc
Q 043765 394 QGLFLSSNKLA 404 (452)
Q Consensus 394 ~~L~l~~n~i~ 404 (452)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.83 E-value=0.0097 Score=30.68 Aligned_cols=22 Identities=45% Similarity=0.761 Sum_probs=17.7
Q ss_pred CCCEEeCcCCcccccCCccccCC
Q 043765 416 RLDTLILDGNEFSESIPTCLGNL 438 (452)
Q Consensus 416 ~L~~L~l~~n~~~~~~~~~~~~~ 438 (452)
+|+.|++++|+++ .+|..+++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4899999999997 788777653
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.46 E-value=0.00033 Score=68.41 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=47.7
Q ss_pred ccceeecccccCccc----CcccccCCCC-CCEEEccCCcCCccc----chhccCC-CccceeecccCcccccCh----h
Q 043765 344 SMERLYIFNCSISGN----IPQVISNLTN-FTVLQLGGNELTGPV----LVTFDRL-QNLQGLFLSSNKLAGSIP----D 409 (452)
Q Consensus 344 ~L~~L~L~~~~l~~~----~~~~~~~~~~-L~~L~l~~n~i~~~~----~~~~~~~-~~L~~L~l~~n~i~~~~~----~ 409 (452)
++++|++.+|.++.. +...+...++ +..+++..|.+.+.. ...+..+ +.++.++++.|.|++.-. +
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 666777777666532 1122333344 555777777665431 2223333 556677777777665433 3
Q ss_pred hhcCCCCCCEEeCcCCcccc
Q 043765 410 DLCRLHRLDTLILDGNEFSE 429 (452)
Q Consensus 410 ~~~~l~~L~~L~l~~n~~~~ 429 (452)
.+..++.++.+.++.|++..
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHhhhHHHHHhhcccCcccc
Confidence 34456677777777776654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.40 E-value=0.00033 Score=68.40 Aligned_cols=84 Identities=27% Similarity=0.381 Sum_probs=40.8
Q ss_pred CCEEeCCCCcCccc----CCccccCCCCCCEEECcCCCCcccCchHHhhcC----CCCCEEEccCccCCcc----CCccc
Q 043765 103 LKFLYFSDNQLSGS----LSSFTFNMSSMLVSDLSTNRFSGELPETICNYL----PNLKALLLNNNMIHGK----IPSIL 170 (452)
Q Consensus 103 L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l----~~L~~L~l~~n~l~~~----~~~~~ 170 (452)
+..+.|.+|.+... +...+...+.|..|++++|.+.+.-...+.+.+ ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55555555555432 223344556666666666666533222332222 2244555555555422 22334
Q ss_pred cCCCCCCEEEccCccc
Q 043765 171 SKCKQLQQLNLGLNDL 186 (452)
Q Consensus 171 ~~l~~L~~L~l~~n~~ 186 (452)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455566666666554
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=0.016 Score=48.62 Aligned_cols=84 Identities=20% Similarity=0.144 Sum_probs=55.2
Q ss_pred ccceeecccccCcccCcccccCCCCCCEEEccCCcCCc-ccchhcc-CCCccceeecccC-cccccChhhhcCCCCCCEE
Q 043765 344 SMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTG-PVLVTFD-RLQNLQGLFLSSN-KLAGSIPDDLCRLHRLDTL 420 (452)
Q Consensus 344 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~-~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L 420 (452)
.++.++-+++.+..+--+.+..+++++.|.+.+|.-.+ ...+-+. -.++|+.|++++| +|++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 67788888887776666667777788888887774322 1111111 2477888888866 4666655677777778777
Q ss_pred eCcCCcc
Q 043765 421 ILDGNEF 427 (452)
Q Consensus 421 ~l~~n~~ 427 (452)
.+.+=+-
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 7766544
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.84 E-value=0.12 Score=27.78 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=11.1
Q ss_pred CCCCEEECcCCCCcccCchHHh
Q 043765 125 SSMLVSDLSTNRFSGELPETIC 146 (452)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~ 146 (452)
++|++|++++|.+. .+|..++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34555555555555 5555544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.84 E-value=0.12 Score=27.78 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=11.1
Q ss_pred CCCCEEECcCCCCcccCchHHh
Q 043765 125 SSMLVSDLSTNRFSGELPETIC 146 (452)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~ 146 (452)
++|++|++++|.+. .+|..++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34555555555555 5555544
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.20 E-value=0.0017 Score=55.45 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=41.7
Q ss_pred CCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCC
Q 043765 73 LGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNL 152 (452)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 152 (452)
+..+...+.||++.|++. .....|.-++.|.+||++.|.+. ..|.++..+..++.++++.|..+ ..|....+ .+++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k-~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK-EPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc-cCCc
Confidence 455556666666666554 22334555556666666666554 34444444444444444444443 44444433 4444
Q ss_pred CEEEccCcc
Q 043765 153 KALLLNNNM 161 (452)
Q Consensus 153 ~~L~l~~n~ 161 (452)
++++..+|.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 444444333
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=0.029 Score=47.13 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=39.3
Q ss_pred CCCEEEccCCcCCcccchhccCCCccceeecccCcccccC-hhhhc-CCCCCCEEeCcCC-cccccCCccccCCCCCCce
Q 043765 368 NFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSI-PDDLC-RLHRLDTLILDGN-EFSESIPTCLGNLTSLEGS 444 (452)
Q Consensus 368 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L 444 (452)
.++.+|=++..|..+.-+.+..+++++.|.+.+|.--+.+ -+.+. -.++|+.|+|++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3455555666666555555566666666666655422111 11122 2356666666666 4443333344555555554
Q ss_pred ec
Q 043765 445 LL 446 (452)
Q Consensus 445 ~l 446 (452)
.+
T Consensus 182 ~l 183 (221)
T KOG3864|consen 182 HL 183 (221)
T ss_pred Hh
Confidence 43
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.85 E-value=0.11 Score=24.73 Aligned_cols=8 Identities=38% Similarity=0.497 Sum_probs=2.9
Q ss_pred CEEeCCCC
Q 043765 104 KFLYFSDN 111 (452)
Q Consensus 104 ~~L~l~~n 111 (452)
+.|++++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.00 E-value=0.099 Score=27.46 Aligned_cols=11 Identities=27% Similarity=0.604 Sum_probs=3.4
Q ss_pred CCEEEccCCcC
Q 043765 369 FTVLQLGGNEL 379 (452)
Q Consensus 369 L~~L~l~~n~i 379 (452)
|++|+|++|+|
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33333333333
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.37 E-value=0.46 Score=25.40 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=6.3
Q ss_pred CCCEEEccCCcCCc
Q 043765 368 NFTVLQLGGNELTG 381 (452)
Q Consensus 368 ~L~~L~l~~n~i~~ 381 (452)
+|++|++++|+|..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.37 E-value=0.46 Score=25.40 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=6.3
Q ss_pred CCCEEEccCCcCCc
Q 043765 368 NFTVLQLGGNELTG 381 (452)
Q Consensus 368 ~L~~L~l~~n~i~~ 381 (452)
+|++|++++|+|..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.13 E-value=0.017 Score=49.56 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=65.2
Q ss_pred hhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCC
Q 043765 96 SIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQ 175 (452)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 175 (452)
.+....+.+.||++.|++. ..-..|.-+..+..|+++.|.+. .+|..+.+ ...++.++...|..+ ..|.+++..++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCccccccCC
Confidence 4566778888999988876 33345566677778888888887 77877776 667777777777665 66777888888
Q ss_pred CCEEEccCcccc
Q 043765 176 LQQLNLGLNDLS 187 (452)
Q Consensus 176 L~~L~l~~n~~~ 187 (452)
++++++.++.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888777754
No 85
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=85.27 E-value=1.2 Score=27.38 Aligned_cols=28 Identities=36% Similarity=0.738 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHhCcCCCCCccCCCCCCC
Q 043765 25 TTDQQVLLALKAHITYDPTNFLAQNWTSN 53 (452)
Q Consensus 25 ~~~~~~l~~~~~~~~~~p~~~~~~~w~~~ 53 (452)
..|.++|+.||.++..+|.+.+.. |...
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~ 29 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSS-WNPS 29 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT---TT
T ss_pred cHHHHHHHHHHHhcccccCccccc-CCCc
Confidence 468899999999997778777777 9875
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.11 E-value=1.6 Score=42.78 Aligned_cols=66 Identities=23% Similarity=0.173 Sum_probs=35.7
Q ss_pred CCCCCCCEEeCCCCcCCCc--CChhhhCCCCCCEEeCCCC--cCcccCCccccCCCCCCEEECcCCCCcc
Q 043765 74 GNLSSLVTLDLSQNKLSGD--IPSSIFTMHTLKFLYFSDN--QLSGSLSSFTFNMSSMLVSDLSTNRFSG 139 (452)
Q Consensus 74 ~~l~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 139 (452)
.+++.+..++|++|++... +..--...++|..|+|++| .+.....-.=-....|++|-+.+|++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3456777777888876522 1112234577778888777 3332111111123445667777776653
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.71 E-value=3.5 Score=22.13 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=8.8
Q ss_pred CCCCEEeCCCCcCc
Q 043765 101 HTLKFLYFSDNQLS 114 (452)
Q Consensus 101 ~~L~~L~l~~n~l~ 114 (452)
++|+.|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.05 E-value=2.6 Score=23.05 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=8.7
Q ss_pred CCCCEEEccCCcCCc
Q 043765 367 TNFTVLQLGGNELTG 381 (452)
Q Consensus 367 ~~L~~L~l~~n~i~~ 381 (452)
++|++|+|++|.++.
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 355666666666654
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.42 E-value=40 Score=32.86 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=28.7
Q ss_pred ccceeecccccCcccCcc---cccCCCCCCEEEccCCcCCc----ccchhccCCCccceeecccCc
Q 043765 344 SMERLYIFNCSISGNIPQ---VISNLTNFTVLQLGGNELTG----PVLVTFDRLQNLQGLFLSSNK 402 (452)
Q Consensus 344 ~L~~L~L~~~~l~~~~~~---~~~~~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~ 402 (452)
-+..+.++.|........ ....-+.+.+|++++|.... .+|........++.+..+.|.
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 455666666665532211 12234567777777775543 223333333344444444443
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.67 E-value=5.1 Score=21.51 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=5.3
Q ss_pred CCEEECcCCCCc
Q 043765 127 MLVSDLSTNRFS 138 (452)
Q Consensus 127 L~~L~l~~n~~~ 138 (452)
|++|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 344444444443
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=54.25 E-value=9.6 Score=20.19 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=10.9
Q ss_pred CCCCCEEeCcCCcc
Q 043765 414 LHRLDTLILDGNEF 427 (452)
Q Consensus 414 l~~L~~L~l~~n~~ 427 (452)
+++|++|+|++|+-
T Consensus 1 c~~L~~L~l~~C~~ 14 (26)
T smart00367 1 CPNLRELDLSGCTN 14 (26)
T ss_pred CCCCCEeCCCCCCC
Confidence 47788888888853
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.05 E-value=13 Score=36.82 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=40.5
Q ss_pred ccceeecccccCccc--CcccccCCCCCCEEEccCC--cCCccc-chhccCCCccceeecccCcccc
Q 043765 344 SMERLYIFNCSISGN--IPQVISNLTNFTVLQLGGN--ELTGPV-LVTFDRLQNLQGLFLSSNKLAG 405 (452)
Q Consensus 344 ~L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~l~~n--~i~~~~-~~~~~~~~~L~~L~l~~n~i~~ 405 (452)
.+..+.|++|++... +.......+.|+.|+|++| .+.... ...+ +...|++|-+.+|++..
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCT 284 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCcccc
Confidence 788889999987632 2222345688999999999 443211 1122 24668889999998764
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=31.05 E-value=1.9e+02 Score=28.54 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=10.8
Q ss_pred eEEeCCCCccccCCcCC
Q 043765 57 SLNISSFNLQGTIPPQL 73 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~ 73 (452)
.++++-|.+....|..+
T Consensus 169 ~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 169 QHDLSPNPIGDKVPIHL 185 (553)
T ss_pred hhccCCCcccccCCccc
Confidence 67777777765555443
No 94
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.89 E-value=65 Score=23.84 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=6.0
Q ss_pred ChhHHHHHHHHH
Q 043765 1 MITVSLIHCLLL 12 (452)
Q Consensus 1 m~~~~~~~~~~~ 12 (452)
|+...++++.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 665554444443
No 95
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=24.64 E-value=43 Score=17.92 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=9.8
Q ss_pred ccCCCCCCceeccccC
Q 043765 435 LGNLTSLEGSLLNVAD 450 (452)
Q Consensus 435 ~~~~~~L~~L~l~~~~ 450 (452)
|.+|+++..||++.++
T Consensus 2 F~~~~~~~~ldls~wd 17 (26)
T TIGR02167 2 FSGCSSLTSLDVSNWD 17 (26)
T ss_pred CCcccccccccccccc
Confidence 4556666666666554
No 96
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=23.87 E-value=98 Score=20.06 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=15.9
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCChhh
Q 043765 1 MITVSLIHCLLLSLVVAATASNNITTD 27 (452)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (452)
|+...++...+.+.++....+.|.+.+
T Consensus 1 MR~~lLf~aiLalsla~s~gavCeesQ 27 (59)
T PF03823_consen 1 MRSTLLFAAILALSLARSFGAVCEESQ 27 (59)
T ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 666666665555555555566665544
Done!