Query 043765
Match_columns 452
No_of_seqs 290 out of 4265
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 13:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.7E-51 1.3E-55 425.9 33.2 426 19-449 5-548 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-50 7.5E-55 420.1 30.1 392 57-450 227-715 (768)
3 4eco_A Uncharacterized protein 100.0 9.8E-49 3.3E-53 398.8 21.8 413 25-449 29-597 (636)
4 3t6q_A CD180 antigen; protein- 100.0 1.6E-45 5.5E-50 374.9 33.0 387 57-447 37-531 (606)
5 4ecn_A Leucine-rich repeat pro 100.0 2.2E-46 7.6E-51 387.9 22.2 413 22-449 265-837 (876)
6 3t6q_A CD180 antigen; protein- 100.0 7.9E-45 2.7E-49 369.8 32.4 387 57-450 16-511 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1E-44 3.4E-49 369.1 28.7 388 55-448 34-554 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 9.7E-44 3.3E-48 359.3 24.4 389 55-449 30-528 (570)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-43 8.3E-48 358.9 26.6 387 57-450 15-532 (606)
10 1ziw_A TOLL-like receptor 3; i 100.0 8.6E-43 2.9E-47 359.5 29.7 371 55-428 27-517 (680)
11 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-41 4.6E-46 350.6 36.6 392 57-449 77-594 (680)
12 4eco_A Uncharacterized protein 100.0 2.3E-43 7.7E-48 359.3 19.0 362 77-450 81-577 (636)
13 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-42 1.8E-46 360.6 25.8 390 55-448 26-535 (844)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-41 7.2E-46 338.2 27.9 374 57-449 4-478 (520)
15 4ecn_A Leucine-rich repeat pro 100.0 3.1E-42 1.1E-46 357.0 21.9 365 61-437 433-849 (876)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-41 9.5E-46 339.7 28.2 381 55-449 28-507 (549)
17 2z63_A TOLL-like receptor 4, v 100.0 8.3E-41 2.8E-45 337.8 30.0 371 57-433 56-536 (570)
18 3v47_A TOLL-like receptor 5B a 100.0 8.9E-41 3E-45 328.1 27.9 352 57-432 34-412 (455)
19 3v47_A TOLL-like receptor 5B a 100.0 1.5E-40 5E-45 326.6 28.0 364 57-449 14-405 (455)
20 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-41 2.9E-45 351.4 25.9 388 57-450 8-515 (844)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.3E-40 1.8E-44 330.8 27.8 172 271-449 331-507 (562)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-39 5.8E-44 324.4 23.6 360 55-430 23-483 (520)
23 2z81_A CD282 antigen, TOLL-lik 100.0 6.9E-40 2.4E-44 329.5 20.2 365 57-432 54-514 (549)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-38 4.8E-43 325.6 30.2 390 55-448 54-576 (635)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.9E-39 1.3E-43 324.5 21.7 359 57-431 56-513 (562)
26 2id5_A Lingo-1, leucine rich r 100.0 4.9E-38 1.7E-42 310.4 28.4 321 57-406 15-335 (477)
27 2id5_A Lingo-1, leucine rich r 100.0 9.3E-37 3.2E-41 301.2 27.3 322 79-429 13-334 (477)
28 1o6v_A Internalin A; bacterial 100.0 7E-36 2.4E-40 293.7 31.8 340 56-429 49-389 (466)
29 4g8a_A TOLL-like receptor 4; l 100.0 8.3E-36 2.8E-40 305.0 29.9 388 57-450 35-553 (635)
30 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-36 8.8E-41 280.8 20.9 296 22-329 2-302 (313)
31 1o6v_A Internalin A; bacterial 100.0 3.5E-35 1.2E-39 288.8 27.7 317 57-405 72-389 (466)
32 3o6n_A APL1; leucine-rich repe 100.0 4.6E-35 1.6E-39 281.4 26.2 311 75-429 43-353 (390)
33 4fmz_A Internalin; leucine ric 100.0 2.4E-34 8E-39 272.2 28.6 307 73-428 40-346 (347)
34 3oja_B Anopheles plasmodium-re 100.0 1.9E-34 6.5E-39 291.9 26.7 311 75-429 49-359 (597)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-34 5.5E-39 282.0 24.8 329 57-436 46-395 (457)
36 1jl5_A Outer protein YOPM; leu 100.0 4E-35 1.4E-39 286.0 19.9 300 101-449 91-406 (454)
37 3o6n_A APL1; leucine-rich repe 100.0 1.8E-34 6.3E-39 277.2 24.2 306 57-406 49-354 (390)
38 3bz5_A Internalin-J, INLJ; leu 100.0 1E-34 3.5E-39 283.4 22.4 312 69-429 34-353 (457)
39 4fmz_A Internalin; leucine ric 100.0 2E-33 7E-38 265.7 28.6 306 96-450 39-344 (347)
40 3oja_B Anopheles plasmodium-re 100.0 1E-33 3.5E-38 286.6 25.0 306 57-406 55-360 (597)
41 1jl5_A Outer protein YOPM; leu 100.0 7.7E-33 2.6E-37 269.9 23.0 328 57-437 75-420 (454)
42 1xku_A Decorin; proteoglycan, 100.0 8E-32 2.7E-36 252.9 26.8 288 78-425 32-329 (330)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-32 3.7E-37 256.3 19.5 249 150-426 50-302 (313)
44 2ft3_A Biglycan; proteoglycan, 100.0 4.6E-32 1.6E-36 254.6 23.8 289 78-425 34-330 (332)
45 1xku_A Decorin; proteoglycan, 100.0 1.7E-31 5.8E-36 250.6 27.3 289 126-449 32-329 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 2.5E-36 8.4E-41 297.0 -5.9 354 57-430 7-413 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 9.4E-32 3.2E-36 252.6 24.0 288 126-449 34-330 (332)
48 1z7x_W Ribonuclease inhibitor; 100.0 6E-35 2.1E-39 287.1 -7.7 356 57-433 32-445 (461)
49 4fcg_A Uncharacterized protein 100.0 7.1E-31 2.4E-35 245.5 17.9 278 21-308 22-314 (328)
50 2z80_A TOLL-like receptor 2, v 100.0 5.1E-30 1.7E-34 242.8 19.8 273 57-357 35-315 (353)
51 2z66_A Variable lymphocyte rec 100.0 5.9E-29 2E-33 230.8 21.3 248 57-310 11-263 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 1.4E-29 4.9E-34 239.7 17.0 203 100-308 30-235 (353)
53 3zyi_A Leucine-rich repeat-con 100.0 2.4E-28 8.1E-33 239.1 25.3 246 57-309 58-304 (452)
54 3zyj_A Leucine-rich repeat-con 100.0 2.9E-28 9.9E-33 237.7 25.3 245 57-308 47-292 (440)
55 2z66_A Variable lymphocyte rec 100.0 3.4E-29 1.2E-33 232.4 17.4 282 104-439 10-298 (306)
56 1ozn_A Reticulon 4 receptor; N 100.0 1.6E-28 5.5E-33 225.4 18.6 223 129-404 15-238 (285)
57 1ozn_A Reticulon 4 receptor; N 100.0 4.6E-28 1.6E-32 222.3 20.5 224 57-286 15-240 (285)
58 3zyi_A Leucine-rich repeat-con 100.0 1.4E-27 4.7E-32 233.8 23.4 248 102-380 55-303 (452)
59 3ogk_B Coronatine-insensitive 100.0 6.3E-31 2.2E-35 266.7 -1.0 351 75-429 110-527 (592)
60 3zyj_A Leucine-rich repeat-con 100.0 1.6E-27 5.4E-32 232.5 22.8 248 102-380 44-292 (440)
61 4fcg_A Uncharacterized protein 100.0 5.1E-28 1.7E-32 226.1 17.1 223 56-284 84-314 (328)
62 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-26 1E-30 230.1 25.6 268 77-414 40-307 (622)
63 3ogk_B Coronatine-insensitive 99.9 9.5E-30 3.2E-34 258.0 -0.1 366 57-425 116-548 (592)
64 3o53_A Protein LRIM1, AGAP0063 99.9 4.5E-28 1.5E-32 225.8 9.7 220 149-406 57-278 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 8.1E-26 2.8E-30 227.0 26.5 265 57-391 44-308 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-27 4.6E-32 222.5 12.0 250 57-322 14-265 (317)
67 1wwl_A Monocyte differentiatio 99.9 3.2E-28 1.1E-32 226.2 6.8 159 149-308 94-266 (312)
68 1wwl_A Monocyte differentiatio 99.9 2.6E-28 8.7E-33 226.9 5.3 250 121-429 39-310 (312)
69 3oja_A Leucine-rich immune mol 99.9 1.4E-26 4.9E-31 227.8 14.1 237 71-323 28-266 (487)
70 3oja_A Leucine-rich immune mol 99.9 6.2E-27 2.1E-31 230.4 9.6 245 140-423 21-270 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 6.1E-25 2.1E-29 200.5 19.8 224 57-310 11-239 (276)
72 2z62_A TOLL-like receptor 4, v 99.9 4.3E-25 1.5E-29 201.5 18.7 225 81-335 11-241 (276)
73 2p1m_B Transport inhibitor res 99.9 2.3E-28 7.8E-33 248.0 -5.1 370 75-449 103-516 (594)
74 2o6q_A Variable lymphocyte rec 99.9 4.8E-24 1.7E-28 193.8 22.9 199 57-259 20-218 (270)
75 2o6q_A Variable lymphocyte rec 99.9 6.7E-24 2.3E-28 192.9 22.2 202 78-308 17-218 (270)
76 3rfs_A Internalin B, repeat mo 99.9 2.4E-24 8.3E-29 195.9 17.2 210 73-295 37-246 (272)
77 1p9a_G Platelet glycoprotein I 99.9 1.2E-23 4.2E-28 192.8 20.0 203 73-308 6-208 (290)
78 3goz_A Leucine-rich repeat-con 99.9 2.1E-25 7.2E-30 211.7 4.3 255 58-312 3-301 (362)
79 3rfs_A Internalin B, repeat mo 99.9 1.9E-23 6.5E-28 190.0 16.7 226 78-318 20-245 (272)
80 2p1m_B Transport inhibitor res 99.9 1.9E-26 6.7E-31 233.8 -3.6 387 57-450 47-492 (594)
81 1p9a_G Platelet glycoprotein I 99.9 1.3E-22 4.5E-27 185.9 20.6 202 121-331 6-208 (290)
82 3goz_A Leucine-rich repeat-con 99.9 7.7E-25 2.6E-29 207.8 4.3 227 81-307 2-265 (362)
83 2xwt_C Thyrotropin receptor; s 99.9 1.1E-22 3.9E-27 181.3 15.0 178 78-259 32-218 (239)
84 2ca6_A RAN GTPase-activating p 99.9 1.2E-24 4.2E-29 208.4 1.0 251 140-431 23-319 (386)
85 2ast_B S-phase kinase-associat 99.9 1.9E-24 6.6E-29 203.1 1.9 250 57-316 51-314 (336)
86 2xwt_C Thyrotropin receptor; s 99.9 1.8E-22 6.3E-27 179.9 14.5 195 55-256 33-236 (239)
87 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.4E-26 175.7 19.9 175 57-235 18-192 (251)
88 2ca6_A RAN GTPase-activating p 99.9 2E-24 7E-29 206.9 1.7 242 69-311 24-319 (386)
89 2ast_B S-phase kinase-associat 99.9 1.2E-23 4.2E-28 197.6 6.2 255 127-436 49-314 (336)
90 4glp_A Monocyte differentiatio 99.9 3.1E-22 1E-26 185.7 14.7 159 149-308 90-264 (310)
91 1h6u_A Internalin H; cell adhe 99.9 8.9E-22 3E-26 182.2 17.2 193 74-284 38-230 (308)
92 3m19_A Variable lymphocyte rec 99.9 2.1E-21 7.1E-26 174.4 18.8 181 77-261 14-194 (251)
93 4glp_A Monocyte differentiatio 99.9 1.8E-22 6.2E-27 187.3 11.4 220 57-284 68-307 (310)
94 1h6u_A Internalin H; cell adhe 99.9 2.9E-21 1E-25 178.7 17.4 210 81-310 23-232 (308)
95 4ay9_X Follicle-stimulating ho 99.9 1.1E-20 3.7E-25 178.3 16.9 205 80-288 12-219 (350)
96 4ay9_X Follicle-stimulating ho 99.8 1E-20 3.6E-25 178.4 16.1 240 177-448 12-255 (350)
97 2o6s_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 161.4 15.7 181 80-296 10-190 (208)
98 2o6s_A Variable lymphocyte rec 99.8 3.6E-20 1.2E-24 161.3 15.6 180 57-247 11-190 (208)
99 2v9t_B SLIT homolog 2 protein 99.8 2.8E-19 9.6E-24 156.8 16.2 151 57-211 15-165 (220)
100 3cvr_A Invasion plasmid antige 99.8 2.1E-19 7.2E-24 178.3 14.4 184 78-291 60-250 (571)
101 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 154.1 17.4 150 57-211 23-172 (229)
102 3cvr_A Invasion plasmid antige 99.8 6.9E-19 2.3E-23 174.7 17.3 183 56-267 62-251 (571)
103 1h6t_A Internalin B; cell adhe 99.8 3.8E-19 1.3E-23 163.0 13.8 170 75-284 44-213 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-18 5.9E-23 151.8 16.7 152 57-212 15-167 (220)
105 2v9t_B SLIT homolog 2 protein 99.8 2.3E-18 7.9E-23 151.0 15.9 151 80-234 14-164 (220)
106 2xot_A Amphoterin-induced prot 99.8 8E-19 2.7E-23 166.1 13.7 152 104-259 21-176 (361)
107 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.6E-23 158.8 14.5 151 149-312 67-217 (291)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 3.2E-18 1.1E-22 150.1 15.4 152 80-259 14-166 (220)
109 2xot_A Amphoterin-induced prot 99.8 1.1E-18 3.7E-23 165.3 12.9 151 57-211 22-176 (361)
110 3e6j_A Variable lymphocyte rec 99.8 5.8E-18 2E-22 149.4 16.3 152 79-235 21-172 (229)
111 1m9s_A Internalin B; cell inva 99.8 2.1E-18 7.3E-23 173.0 12.6 169 57-240 47-215 (605)
112 3sb4_A Hypothetical leucine ri 99.8 4.7E-19 1.6E-23 165.6 7.0 123 76-207 24-157 (329)
113 1m9s_A Internalin B; cell inva 99.8 9.2E-18 3.1E-22 168.4 16.5 171 99-285 41-211 (605)
114 4ezg_A Putative uncharacterize 99.7 5.6E-18 1.9E-22 146.0 10.4 110 170-284 84-194 (197)
115 4ezg_A Putative uncharacterize 99.7 3.6E-17 1.2E-21 140.8 13.7 146 57-211 48-194 (197)
116 3sb4_A Hypothetical leucine ri 99.7 6.1E-18 2.1E-22 158.0 9.5 222 197-445 100-327 (329)
117 1xeu_A Internalin C; cellular 99.7 1.2E-17 4E-22 150.6 10.9 164 58-237 24-187 (263)
118 1dce_A Protein (RAB geranylger 99.7 1.4E-19 4.6E-24 180.6 -5.4 122 175-302 442-567 (567)
119 1xeu_A Internalin C; cellular 99.7 2.7E-17 9.3E-22 148.3 9.7 167 77-284 19-185 (263)
120 4fdw_A Leucine rich hypothetic 99.7 2.1E-15 7E-20 144.0 22.7 238 66-317 125-367 (401)
121 4fs7_A Uncharacterized protein 99.7 2.7E-15 9.3E-20 143.6 22.8 334 65-443 59-392 (394)
122 4b8c_D Glucose-repressible alc 99.7 5.8E-18 2E-22 174.0 3.9 181 116-308 215-404 (727)
123 1dce_A Protein (RAB geranylger 99.7 1.4E-19 4.7E-24 180.6 -8.2 122 296-446 442-567 (567)
124 2ell_A Acidic leucine-rich nuc 99.7 1.6E-16 5.6E-21 133.0 11.4 133 76-211 23-160 (168)
125 4fdw_A Leucine rich hypothetic 99.7 7.5E-15 2.6E-19 140.1 23.1 264 125-427 113-382 (401)
126 1w8a_A SLIT protein; signaling 99.7 2.4E-16 8.3E-21 135.0 11.0 111 151-261 30-141 (192)
127 4b8c_D Glucose-repressible alc 99.7 5.7E-18 2E-22 174.1 1.0 177 57-240 177-359 (727)
128 1w8a_A SLIT protein; signaling 99.7 5.4E-16 1.8E-20 132.8 13.2 127 57-187 12-139 (192)
129 2je0_A Acidic leucine-rich nuc 99.7 2E-16 6.9E-21 129.6 9.0 127 77-206 17-148 (149)
130 4fs7_A Uncharacterized protein 99.6 1.5E-14 5.3E-19 138.4 21.1 316 89-447 59-374 (394)
131 2je0_A Acidic leucine-rich nuc 99.6 9.5E-16 3.3E-20 125.6 9.6 124 57-183 21-149 (149)
132 2wfh_A SLIT homolog 2 protein 99.6 5.1E-15 1.7E-19 126.7 14.5 126 57-187 14-139 (193)
133 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7.3E-20 126.2 11.7 133 149-284 23-160 (168)
134 2wfh_A SLIT homolog 2 protein 99.6 5.4E-15 1.8E-19 126.5 13.1 107 151-258 32-138 (193)
135 2o6r_A Variable lymphocyte rec 99.6 6.8E-15 2.3E-19 124.3 13.3 127 57-187 11-137 (177)
136 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 123.0 13.2 128 129-260 11-138 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.6 4.8E-15 1.6E-19 125.0 9.2 133 72-211 14-153 (176)
138 4gt6_A Cell surface protein; l 99.5 2.2E-12 7.4E-17 123.4 24.2 327 70-447 56-386 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.9E-14 9.9E-19 120.2 8.5 109 122-235 16-126 (176)
140 1ds9_A Outer arm dynein; leuci 99.5 1.5E-16 5.1E-21 137.1 -6.3 110 96-211 43-153 (198)
141 4gt6_A Cell surface protein; l 99.5 4.7E-12 1.6E-16 121.1 24.0 311 89-448 51-366 (394)
142 1ds9_A Outer arm dynein; leuci 99.5 4.7E-16 1.6E-20 134.0 -5.6 135 97-237 14-155 (198)
143 3g39_A Variable lymphocyte rec 99.4 5.5E-13 1.9E-17 111.5 11.5 79 57-138 13-91 (170)
144 3g39_A Variable lymphocyte rec 99.4 9.6E-13 3.3E-17 110.0 11.8 108 78-189 10-117 (170)
145 2r9u_A Variable lymphocyte rec 99.4 8.9E-13 3E-17 110.6 11.5 79 57-138 16-94 (174)
146 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 109.4 11.8 106 79-188 14-119 (174)
147 3un9_A NLR family member X1; l 99.3 7.8E-14 2.7E-18 131.7 -1.6 187 222-428 72-283 (372)
148 3un9_A NLR family member X1; l 99.3 1.8E-13 6.1E-18 129.3 -2.5 38 126-163 102-139 (372)
149 2ifg_A High affinity nerve gro 99.2 2.8E-11 9.7E-16 113.6 10.5 103 57-163 12-116 (347)
150 4h09_A Hypothetical leucine ri 99.2 2.9E-09 9.8E-14 101.2 24.4 305 73-417 42-358 (379)
151 4h09_A Hypothetical leucine ri 99.2 2.2E-09 7.5E-14 101.9 23.0 307 96-442 41-359 (379)
152 2ifg_A High affinity nerve gro 99.2 7.8E-11 2.7E-15 110.6 9.4 103 129-235 12-116 (347)
153 2ra8_A Uncharacterized protein 98.8 2.6E-09 8.8E-14 100.0 5.8 153 149-306 171-341 (362)
154 2ra8_A Uncharacterized protein 98.8 3.9E-09 1.3E-13 98.8 6.3 63 197-259 251-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 1.4E-08 4.8E-13 85.7 3.6 107 344-450 37-162 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 3.3E-08 1.1E-12 83.5 2.8 69 70-138 29-106 (185)
157 3e4g_A ATP synthase subunit S, 98.5 5.4E-08 1.8E-12 80.1 3.8 84 344-427 62-151 (176)
158 3rw6_A Nuclear RNA export fact 98.4 6.8E-08 2.3E-12 85.7 2.6 81 364-446 167-258 (267)
159 3rw6_A Nuclear RNA export fact 98.4 5.5E-07 1.9E-11 79.9 8.0 66 75-142 168-237 (267)
160 3e4g_A ATP synthase subunit S, 98.4 1.1E-07 3.8E-12 78.2 3.2 91 359-449 53-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 6.2E-06 2.1E-10 69.1 3.7 106 344-449 42-167 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 4.5E-05 1.5E-09 63.9 4.1 84 344-427 71-169 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0038 1.3E-07 48.6 7.1 55 57-113 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0047 1.6E-07 48.1 6.5 57 80-138 11-68 (130)
165 2lz0_A Uncharacterized protein 63.9 23 0.00078 25.4 6.5 38 168-206 14-51 (100)
166 2lz0_A Uncharacterized protein 59.7 22 0.00074 25.5 5.7 45 65-110 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-51 Score=425.88 Aligned_cols=426 Identities=33% Similarity=0.447 Sum_probs=296.3
Q ss_pred hhcCCChhhHHHHHHHHHhCcCCCCCccCCCCCCCCce--------------eEEeCCCCcccc---CC-----------
Q 043765 19 TASNNITTDQQVLLALKAHITYDPTNFLAQNWTSNTSF--------------SLNISSFNLQGT---IP----------- 70 (452)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~--------------~l~l~~~~~~~~---~~----------- 70 (452)
+++++.++|++|+++||+++. ||. .+.+ |...++| +|+|+++++.|. +|
T Consensus 5 ~~~~~~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccccCCHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 344456789999999999995 777 6666 8643322 789999888775 32
Q ss_pred ------------cCCCCCCCCCEEeCCCCcCCCcCCh--hhhCCCCCCEEeCCCCcCcccCCccc-cCCCCCCEEECcCC
Q 043765 71 ------------PQLGNLSSLVTLDLSQNKLSGDIPS--SIFTMHTLKFLYFSDNQLSGSLSSFT-FNMSSMLVSDLSTN 135 (452)
Q Consensus 71 ------------~~~~~l~~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n 135 (452)
+.++.+++|++|++++|.+++.+|. .+.++++|++|++++|.+.+..|..+ .++++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 5788889999999999999888887 88889999999999888876666544 56666666666666
Q ss_pred CCcccCchHH--h----------------------hcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCC
Q 043765 136 RFSGELPETI--C----------------------NYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIP 191 (452)
Q Consensus 136 ~~~~~~~~~~--~----------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 191 (452)
.+++..|..+ . ..+++|++|++++|.+.+.+|. +.++++|++|++++|.+++.+|
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 6554333321 0 1245566666666665554444 5555555555555555554444
Q ss_pred CCccCCCCccEEE----------------------eecccceecCCcccCCC-CCCCEEEccCCcccccccccccCCCCc
Q 043765 192 KEIGNFTSLQKIS----------------------LIYNKLHGEIPLEVGNL-RNQDTLWLGSNNLVGIVLSTIFNKSAV 248 (452)
Q Consensus 192 ~~~~~l~~L~~L~----------------------l~~n~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L 248 (452)
..++.+++|++|+ +++|.+.+.+|..+... ++|++|++++|.+.+..|..+.++++|
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred HHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence 4444444444444 44444444555555443 667777777777766666666677777
Q ss_pred cEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccC---------------------------CCCCcEEE
Q 043765 249 KEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITN---------------------------ASNLTILE 301 (452)
Q Consensus 249 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~---------------------------~~~L~~L~ 301 (452)
++|++++|.+.+.+|...+..+++|++|++++|.+++.+|..+.+ +++|++|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 777777777666666654446666666666666666555544433 44555555
Q ss_pred eeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCC
Q 043765 302 MGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELT 380 (452)
Q Consensus 302 L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~ 380 (452)
+++|.+.+.+|..+..++.|+.+ +..|.+.+.+|..+..+. +|+.|++++|++.+.+|..+..+++|++|++++|+++
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 55555555666666666666665 667777777777777776 7888888888888778888888888888888888888
Q ss_pred cccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCCceecccc
Q 043765 381 GPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 381 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 449 (452)
+.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..++.+++|++|+++.|
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 888888888888888888888888888888888888888888888888888888888888888888765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-50 Score=420.12 Aligned_cols=392 Identities=30% Similarity=0.437 Sum_probs=272.1
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCC----------------------CcCChhhhCC-CCCCEEeCCCCcC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLS----------------------GDIPSSIFTM-HTLKFLYFSDNQL 113 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~----------------------~~~~~~~~~l-~~L~~L~l~~n~l 113 (452)
+|++++|.+++..|..+..+++|++|++++|.++ +.+|..+... ++|++|++++|.+
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 4555555555444444444444444444444443 3444444433 5555666665555
Q ss_pred cccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCC-CCCEEEccCccccccCCC
Q 043765 114 SGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCK-QLQQLNLGLNDLSGAIPK 192 (452)
Q Consensus 114 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~ 192 (452)
.+.+|..+.++++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++..|.
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence 5555555666666666666666665555555333366666666666666555555555554 566666666666555555
Q ss_pred CccC--CCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCC
Q 043765 193 EIGN--FTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLAL 270 (452)
Q Consensus 193 ~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 270 (452)
.+.. +++|++|++++|.+.+.+|..++.+++|++|++++|.+++..|..+.++++|+.|++++|.+.+.+|..+. .+
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l 465 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YV 465 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GC
T ss_pred hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-CC
Confidence 5544 56677777777777666777777777777777777777777777777777777777777777766666555 67
Q ss_pred CCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchhccceee
Q 043765 271 PNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLY 349 (452)
Q Consensus 271 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~ 349 (452)
++|+.|++++|++++.+|.++.++++|++|++++|.+.+.+|..+..++.|+.+ +..|.+.+.+|..+..++ +|+.|+
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ 544 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLD 544 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEE
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEE
Confidence 777777777777777777777777777777777777777777777777777665 667777777777777776 777777
Q ss_pred cccccCcccCcc--------------------------------------------------------------------
Q 043765 350 IFNCSISGNIPQ-------------------------------------------------------------------- 361 (452)
Q Consensus 350 L~~~~l~~~~~~-------------------------------------------------------------------- 361 (452)
+++|++++.+|.
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 777776655553
Q ss_pred --cccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCccccCCC
Q 043765 362 --VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLT 439 (452)
Q Consensus 362 --~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 439 (452)
.+..+++|+.||+++|++++.+|..+..+++|+.|++++|+++|.+|..+.++++|+.|++++|+++|.+|+.+..++
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 334457788999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccccC
Q 043765 440 SLEGSLLNVAD 450 (452)
Q Consensus 440 ~L~~L~l~~~~ 450 (452)
+|++||++.|.
T Consensus 705 ~L~~L~ls~N~ 715 (768)
T 3rgz_A 705 MLTEIDLSNNN 715 (768)
T ss_dssp CCSEEECCSSE
T ss_pred CCCEEECcCCc
Confidence 99999988763
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.8e-49 Score=398.83 Aligned_cols=413 Identities=15% Similarity=0.248 Sum_probs=354.3
Q ss_pred hhhHHHHHHHHHhCcCCCCCccC------CCCCCC------------------CceeEEeCCCCccccCCcCCCCCCCCC
Q 043765 25 TTDQQVLLALKAHITYDPTNFLA------QNWTSN------------------TSFSLNISSFNLQGTIPPQLGNLSSLV 80 (452)
Q Consensus 25 ~~~~~~l~~~~~~~~~~p~~~~~------~~w~~~------------------~~~~l~l~~~~~~~~~~~~~~~l~~L~ 80 (452)
..|..|+.+++.++....+.... .+|... ....|+|+++++.|.+|++++++++|+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~ 108 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELE 108 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccce
Confidence 46889999999998544443211 124311 122899999999999999999999999
Q ss_pred EEeCCCCcC-----------------------------------------------------------------------
Q 043765 81 TLDLSQNKL----------------------------------------------------------------------- 89 (452)
Q Consensus 81 ~L~ls~n~l----------------------------------------------------------------------- 89 (452)
+|++++|.+
T Consensus 109 ~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l 188 (636)
T 4eco_A 109 VLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188 (636)
T ss_dssp EEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTT
T ss_pred EEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhh
Confidence 999998843
Q ss_pred -------CCcCChhhhCCCCCCEEeCCCCcCccc-----------------CCcccc--CCCCCCEEECcCCCCcccCch
Q 043765 90 -------SGDIPSSIFTMHTLKFLYFSDNQLSGS-----------------LSSFTF--NMSSMLVSDLSTNRFSGELPE 143 (452)
Q Consensus 90 -------~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~ 143 (452)
++ +|..+.++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|.
T Consensus 189 ~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~ 267 (636)
T 4eco_A 189 GQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267 (636)
T ss_dssp TCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT
T ss_pred ccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH
Confidence 34 788899999999999999999985 899988 999999999999999999998
Q ss_pred HHhhcCCCCCEEEccCcc-CCc-cCCccccCC------CCCCEEEccCccccccCCC--CccCCCCccEEEeecccceec
Q 043765 144 TICNYLPNLKALLLNNNM-IHG-KIPSILSKC------KQLQQLNLGLNDLSGAIPK--EIGNFTSLQKISLIYNKLHGE 213 (452)
Q Consensus 144 ~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~ 213 (452)
.+.+ +++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .++.+++|++|++++|.+.|.
T Consensus 268 ~l~~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 268 FLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTT-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred HHhc-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 8887 9999999999998 887 788877776 99999999999999 8888 899999999999999999988
Q ss_pred CCcccCCCCCCCEEEccCCcccccccccccCCCC-ccEEeccCCcCcccCChhhh-cCCCCCcEEeccccceeecCCccc
Q 043765 214 IPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSA-VKEIDLFNNSLSGNLPSRTD-LALPNIDYLGLAINRFSGTIPSFI 291 (452)
Q Consensus 214 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l 291 (452)
+| .++.+++|++|++++|.+. ..|..+.++++ |+.|++++|.+. .+|.... ..+++|+.|++++|.+++..|..+
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 99 8999999999999999999 55666889999 999999999998 7776543 124489999999999999888888
Q ss_pred c-------CCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchh-------ccceeecccccCc
Q 043765 292 T-------NASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSI-------SMERLYIFNCSIS 356 (452)
Q Consensus 292 ~-------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~-------~L~~L~L~~~~l~ 356 (452)
. .+++|++|++++|.+.+..+..+..++.|+.+ +..|.+. .+|..+..... +|+.|++++|+++
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC
Confidence 8 88899999999999986555556667777765 7777777 77766554332 8999999999999
Q ss_pred ccCccccc--CCCCCCEEEccCCcCCcccchhccCCCccceeec------ccCcccccChhhhcCCCCCCEEeCcCCccc
Q 043765 357 GNIPQVIS--NLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFL------SSNKLAGSIPDDLCRLHRLDTLILDGNEFS 428 (452)
Q Consensus 357 ~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l------~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 428 (452)
.+|..+. .+++|++|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|++
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence 7888776 89999999999999998 7888889999999999 56788889999999999999999999999
Q ss_pred ccCCccccCCCCCCceecccc
Q 043765 429 ESIPTCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 429 ~~~~~~~~~~~~L~~L~l~~~ 449 (452)
+.+|..+. ++|+.||++.|
T Consensus 579 ~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 579 RKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp CBCCSCCC--TTCCEEECCSC
T ss_pred CccCHhHh--CcCCEEECcCC
Confidence 78898766 79999999876
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-45 Score=374.93 Aligned_cols=387 Identities=20% Similarity=0.171 Sum_probs=223.1
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
+|++++|++++..|..|.++++|++|++++|++.+..|.+|.++++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence 67777777776666667777777777777777766666667777777777777776666666666666666666666666
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCc------------------------cCCccccCCCCCC--EEEccCccccc--
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHG------------------------KIPSILSKCKQLQ--QLNLGLNDLSG-- 188 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~--~L~l~~n~~~~-- 188 (452)
+++..+..+.. +++|++|++++|.+.+ ..+..|..+++|+ .|++++|.+.+
T Consensus 117 i~~l~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 117 ISSIDFIPLHN-QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp CSCGGGSCCTT-CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred cccCCcchhcc-CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccC
Confidence 65322222222 5555555555555443 2222233333333 33333333222
Q ss_pred -------------------------------------------------------------------------cCCCCcc
Q 043765 189 -------------------------------------------------------------------------AIPKEIG 195 (452)
Q Consensus 189 -------------------------------------------------------------------------~~~~~~~ 195 (452)
..+..|+
T Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~ 275 (606)
T 3t6q_A 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275 (606)
T ss_dssp TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT
T ss_pred hhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhc
Confidence 1122245
Q ss_pred CCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcE
Q 043765 196 NFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDY 275 (452)
Q Consensus 196 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 275 (452)
.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+.++...+..+++|++
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 5566777777777666 566667777777777777777776666666677777777777776665565554446677777
Q ss_pred EeccccceeecC--CccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCch-hhcchhccceeecc
Q 043765 276 LGLAINRFSGTI--PSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSS-IGNLSISMERLYIF 351 (452)
Q Consensus 276 L~l~~n~l~~~~--~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~-~~~~~~~L~~L~L~ 351 (452)
|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..++.|+.+ +..|.+.+..|.. +..+. +|+.|+++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~ 433 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKVLNLS 433 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCEEECT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCEEECC
Confidence 777777666544 5556667777777777776666666666666665554 4445554444332 44444 55555555
Q ss_pred cccCcccCcccccCCCCCCEEEccCCcCCcc---cchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCccc
Q 043765 352 NCSISGNIPQVISNLTNFTVLQLGGNELTGP---VLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFS 428 (452)
Q Consensus 352 ~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 428 (452)
+|.+.+..|..+..+++|++|++++|++++. .+..+..+++|+.|++++|++++..|..|..+++|+.|++++|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 5555554555555555555555555555431 1133444555555555555555444445555555555555555554
Q ss_pred ccCCccccCCCCCCceecc
Q 043765 429 ESIPTCLGNLTSLEGSLLN 447 (452)
Q Consensus 429 ~~~~~~~~~~~~L~~L~l~ 447 (452)
+..|+.+.+++.| +|+++
T Consensus 514 ~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp GGGGGGGTTCCSC-EEECC
T ss_pred cCChhHhCccccc-EEECc
Confidence 4444444444444 44444
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-46 Score=387.95 Aligned_cols=413 Identities=16% Similarity=0.246 Sum_probs=341.1
Q ss_pred CCChhhHHHHHHHHHhCcCCCCCcc---------C--CCC------------CCC------CceeEEeCCCCccccCCcC
Q 043765 22 NNITTDQQVLLALKAHITYDPTNFL---------A--QNW------------TSN------TSFSLNISSFNLQGTIPPQ 72 (452)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~p~~~~---------~--~~w------------~~~------~~~~l~l~~~~~~~~~~~~ 72 (452)
+....|.++++++|+++. +| .|. . -+| .+. ....|+|+++++.|.+|+.
T Consensus 265 ~~~~~d~~ALl~~k~~l~-~~-~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~ 342 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD-GK-NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT-GG-GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGG
T ss_pred ccchHHHHHHHHHHHHcC-CC-CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchH
Confidence 344578999999999984 33 221 1 126 221 1238999999999999999
Q ss_pred CCCCCCCCEEeC-CCCcCCCc-----------------------------------------------------------
Q 043765 73 LGNLSSLVTLDL-SQNKLSGD----------------------------------------------------------- 92 (452)
Q Consensus 73 ~~~l~~L~~L~l-s~n~l~~~----------------------------------------------------------- 92 (452)
++++++|++|+| ++|.+.|.
T Consensus 343 l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~ 422 (876)
T 4ecn_A 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422 (876)
T ss_dssp GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCC
T ss_pred HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccc
Confidence 999999999999 77754332
Q ss_pred -----------------CChhhhCCCCCCEEeCCCCcCcc-----------------cCCcccc--CCCCCCEEECcCCC
Q 043765 93 -----------------IPSSIFTMHTLKFLYFSDNQLSG-----------------SLSSFTF--NMSSMLVSDLSTNR 136 (452)
Q Consensus 93 -----------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~ 136 (452)
+|..|.++++|++|++++|.+++ .+|..++ ++++|++|++++|.
T Consensus 423 l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~ 502 (876)
T 4ecn_A 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502 (876)
T ss_dssp CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT
T ss_pred cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC
Confidence 77889999999999999999997 3888877 99999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCcc-CCc-cCCccccCC-------CCCCEEEccCccccccCCC--CccCCCCccEEEe
Q 043765 137 FSGELPETICNYLPNLKALLLNNNM-IHG-KIPSILSKC-------KQLQQLNLGLNDLSGAIPK--EIGNFTSLQKISL 205 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l 205 (452)
+.+.+|..+.. +++|++|++++|+ +++ .+|..+..+ ++|++|++++|.+. .+|. .++.+++|+.|++
T Consensus 503 l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 503 NMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp TCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred CCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 99899988887 9999999999998 887 677655544 59999999999999 8888 8999999999999
Q ss_pred ecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCC-ccEEeccCCcCcccCChhhhcCC--CCCcEEeccccc
Q 043765 206 IYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSA-VKEIDLFNNSLSGNLPSRTDLAL--PNIDYLGLAINR 282 (452)
Q Consensus 206 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~ 282 (452)
++|.+. .+| .++.+++|+.|++++|.+. ..|..+.++++ |+.|++++|.+. .+|.... .. ++|+.|++++|+
T Consensus 581 s~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 581 VHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNK 655 (876)
T ss_dssp TTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSC
T ss_pred CCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCc
Confidence 999998 788 8999999999999999999 55667888888 999999999998 7775443 33 459999999999
Q ss_pred eeecCCccc---c--CCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchh-------ccceee
Q 043765 283 FSGTIPSFI---T--NASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSI-------SMERLY 349 (452)
Q Consensus 283 l~~~~~~~l---~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~-------~L~~L~ 349 (452)
+++.+|... . .+++|+.|++++|.+...++..+..++.|+.+ ++.|.+. .+|..+..... +|+.|+
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEE
Confidence 987665422 2 34589999999999985444444466677665 6677776 77766554322 899999
Q ss_pred cccccCcccCccccc--CCCCCCEEEccCCcCCcccchhccCCCccceeeccc------CcccccChhhhcCCCCCCEEe
Q 043765 350 IFNCSISGNIPQVIS--NLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSS------NKLAGSIPDDLCRLHRLDTLI 421 (452)
Q Consensus 350 L~~~~l~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~------n~i~~~~~~~~~~l~~L~~L~ 421 (452)
|++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|+
T Consensus 735 Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 735 LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp CCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 9999999 7888886 89999999999999998 677888999999999976 788889999999999999999
Q ss_pred CcCCcccccCCccccCCCCCCceecccc
Q 043765 422 LDGNEFSESIPTCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 422 l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 449 (452)
|++|++ +.+|..+. ++|+.||++.|
T Consensus 813 Ls~N~L-~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 813 IGSNDI-RKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp CCSSCC-CBCCSCCC--SSSCEEECCSC
T ss_pred CCCCCC-CccCHhhc--CCCCEEECCCC
Confidence 999999 78998765 69999999866
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.9e-45 Score=369.84 Aligned_cols=387 Identities=23% Similarity=0.199 Sum_probs=279.8
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++.++.+++ .+|..+. +++++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 6889998887 4666554 479999999999998889999999999999999999998889999999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
+.+..|..+.. +++|++|++++|.+.+..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+.
T Consensus 93 l~~~~~~~~~~-l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETALSG-PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTTTSS-CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ccccChhhhcc-cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 99666666665 99999999999999976678899999999999999999864434455588999999988887765555
Q ss_pred ccCCCCCCC--EEEccCCcccc----------------------------------------------------------
Q 043765 217 EVGNLRNQD--TLWLGSNNLVG---------------------------------------------------------- 236 (452)
Q Consensus 217 ~~~~l~~L~--~L~l~~~~~~~---------------------------------------------------------- 236 (452)
.++.+++++ ++++++|.+.+
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 555555555 45555444332
Q ss_pred -----------------cccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcE
Q 043765 237 -----------------IVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTI 299 (452)
Q Consensus 237 -----------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 299 (452)
..+..+.++++|+.|++++|.++ .+|..+. .+++|++|++++|.+++..|..+..+++|++
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 22333555667777777777766 5555443 5666677776666666554444555555555
Q ss_pred EEeeCc-------------------------ccceeC--CccccCchhHHHh-hcCCCCcccCCchhhcchhccceeecc
Q 043765 300 LEMGLN-------------------------SFSGFI--PNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIF 351 (452)
Q Consensus 300 L~L~~n-------------------------~l~~~~--~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~ 351 (452)
|++++| .+.+.. +..+..++.|+.+ +..|.+.+..|..+..++ +|+.|+++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~ 408 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLA 408 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT-TCSEEECT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc-cCCeEECC
Confidence 555544 444333 3444555555544 555555555566666665 67777777
Q ss_pred cccCcccCcc-cccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCccccc---ChhhhcCCCCCCEEeCcCCcc
Q 043765 352 NCSISGNIPQ-VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGS---IPDDLCRLHRLDTLILDGNEF 427 (452)
Q Consensus 352 ~~~l~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~l~~n~~ 427 (452)
+|++.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+++|+.|++++|++
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 7776655443 366677777777777777776777777777777777777777652 224577778888888888887
Q ss_pred cccCCccccCCCCCCceeccccC
Q 043765 428 SESIPTCLGNLTSLEGSLLNVAD 450 (452)
Q Consensus 428 ~~~~~~~~~~~~~L~~L~l~~~~ 450 (452)
++..|..+..+++|++|+++.+.
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC
T ss_pred CccChhhhccccCCCEEECCCCc
Confidence 77677778888888888877653
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-44 Score=369.06 Aligned_cols=388 Identities=20% Similarity=0.151 Sum_probs=292.7
Q ss_pred ceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 043765 55 SFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLST 134 (452)
Q Consensus 55 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 134 (452)
..+|++++|++++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 44899999999988888899999999999999999988888899999999999999999988888999999999999999
Q ss_pred CCCcccCchHHhhcCCCCCEEEccCccCCc-cCCccccCCCCCCEEEccCccccccCCCCccCCC---------------
Q 043765 135 NRFSGELPETICNYLPNLKALLLNNNMIHG-KIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFT--------------- 198 (452)
Q Consensus 135 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--------------- 198 (452)
|.+.+..+..+.. +++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..+..++.++
T Consensus 114 n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~ 192 (606)
T 3vq2_A 114 TKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192 (606)
T ss_dssp SCCCCSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC
T ss_pred CccccccccccCC-CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC
Confidence 9998444455555 8999999999999875 5688899999999999999988766665544333
Q ss_pred ------------CccEEEeeccccee------------------------------------------------------
Q 043765 199 ------------SLQKISLIYNKLHG------------------------------------------------------ 212 (452)
Q Consensus 199 ------------~L~~L~l~~n~~~~------------------------------------------------------ 212 (452)
+|++|++++|.+.+
T Consensus 193 l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 272 (606)
T 3vq2_A 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272 (606)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCT
T ss_pred cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccc
Confidence 34445554443210
Q ss_pred --------------------------cCCcccCCCCCCCEEEccCCcccccc-------------------cccccCCCC
Q 043765 213 --------------------------EIPLEVGNLRNQDTLWLGSNNLVGIV-------------------LSTIFNKSA 247 (452)
Q Consensus 213 --------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~-------------------~~~l~~~~~ 247 (452)
.+| .+..+++|++|++++|.+...+ ...+..+++
T Consensus 273 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 351 (606)
T 3vq2_A 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351 (606)
T ss_dssp TCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTT
T ss_pred cccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCC
Confidence 011 2333344555555555442221 112334455
Q ss_pred ccEEeccCCcCccc--CChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCC-ccccCchhHHHh
Q 043765 248 VKEIDLFNNSLSGN--LPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIP-NKIGNLRTLQTA 324 (452)
Q Consensus 248 L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~~ 324 (452)
|+.|++++|.+.+. ++.... .+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..+ ..+..++.|+.+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 55555555555433 233333 67777777777777764 44667778888888888888877766 567777777775
Q ss_pred -hcCCCCcccCCchhhcchhccceeecccccCcc-cCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCc
Q 043765 325 -LSNNPLDGILPSSIGNLSISMERLYIFNCSISG-NIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNK 402 (452)
Q Consensus 325 -~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 402 (452)
+..|.+.+..|..+..+. +|++|++++|++++ ..|..+..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus 430 ~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp ECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 777788888888888887 89999999998887 367788888999999999999988888888889999999999999
Q ss_pred ccccChhhhcCCCCCCEEeCcCCcccccCCccccCCC-CCCceeccc
Q 043765 403 LAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLT-SLEGSLLNV 448 (452)
Q Consensus 403 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~ 448 (452)
+++..|..+..+++|+.|++++|+++ .+|..+..++ +|++|+++.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCS
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccC
Confidence 98888888999999999999999886 6777788886 599988876
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-44 Score=359.29 Aligned_cols=389 Identities=20% Similarity=0.232 Sum_probs=305.1
Q ss_pred ceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 043765 55 SFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLST 134 (452)
Q Consensus 55 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 134 (452)
...|++++|++++..+..|..+++|++|++++|.+++..+.+|.++++|++|++++|++.+..+..|.++++|++|++++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 33789999999888888888899999999999988877778888899999999999988877778888888999999988
Q ss_pred CCCcccCchHHhhcCCCCCEEEccCccCCc-cCCccccCCCCCCEEEccCccccccCCCCccCCCCc----cEEEeeccc
Q 043765 135 NRFSGELPETICNYLPNLKALLLNNNMIHG-KIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSL----QKISLIYNK 209 (452)
Q Consensus 135 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L----~~L~l~~n~ 209 (452)
|.++ .++...+..+++|++|++++|.+.+ .+|..|.++++|++|++++|.+.+..+..++.+++| +.+++++|.
T Consensus 110 n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 110 TNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp SCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred cccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 8887 4544323338888888888888875 357888888888888888888776555555555555 455555544
Q ss_pred cee-----------------------------------------------------------------------------
Q 043765 210 LHG----------------------------------------------------------------------------- 212 (452)
Q Consensus 210 ~~~----------------------------------------------------------------------------- 212 (452)
+.+
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 332
Q ss_pred ----cCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhh-------------------cC
Q 043765 213 ----EIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTD-------------------LA 269 (452)
Q Consensus 213 ----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-------------------~~ 269 (452)
..+..+..+++|+++++++|.+.+. +..+..+ +|+.|++++|.+. .+|.... ..
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEECSC-CBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred hhhhhchhhhcCcCcccEEEecCccchhh-hhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccccc
Confidence 2334455667888888888877753 3445555 6666666666554 3332110 25
Q ss_pred CCCCcEEeccccceeecC--CccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCC-chhhcchhcc
Q 043765 270 LPNIDYLGLAINRFSGTI--PSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILP-SSIGNLSISM 345 (452)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~--~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p-~~~~~~~~~L 345 (452)
+++|+.|++++|.+++.. +..+.++++|++|++++|.+.+..+. +..++.|+.+ +..|.+.+..| ..+..++ +|
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L 423 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NL 423 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT-TC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC-CC
Confidence 678888888888887553 56778889999999999988766555 7788888776 67777777666 4566676 99
Q ss_pred ceeecccccCcccCcccccCCCCCCEEEccCCcCC-cccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcC
Q 043765 346 ERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELT-GPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDG 424 (452)
Q Consensus 346 ~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 424 (452)
+.|++++|.+.+..|..+.++++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 99999999999888999999999999999999997 57888899999999999999999988899999999999999999
Q ss_pred CcccccCCccccCCCCCCceecccc
Q 043765 425 NEFSESIPTCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 425 n~~~~~~~~~~~~~~~L~~L~l~~~ 449 (452)
|++++..|+.+..+++|++|+++.+
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCCCCHHHhhcccCCcEEEecCC
Confidence 9998877888999999999999864
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-43 Score=358.88 Aligned_cols=387 Identities=20% Similarity=0.201 Sum_probs=312.8
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++.++++++. +|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 78999999985 555454 799999999999998888899999999999999999998889999999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccc-cCCCCccCCCCccEEEeecccceecCC
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSG-AIPKEIGNFTSLQKISLIYNKLHGEIP 215 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~ 215 (452)
+++..|..+.. +++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+
T Consensus 92 l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCTTSSTT-CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred ccccChhhcCC-cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 99655777766 9999999999999987777889999999999999999975 568999999999999999999987766
Q ss_pred cccCCCCCCC----EEEccCCccccccccc--------------------------------------------------
Q 043765 216 LEVGNLRNQD----TLWLGSNNLVGIVLST-------------------------------------------------- 241 (452)
Q Consensus 216 ~~~~~l~~L~----~L~l~~~~~~~~~~~~-------------------------------------------------- 241 (452)
..++.+.+++ ++++++|.+.+..+..
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 6665544333 5555555554333322
Q ss_pred ----------------------------------------------------ccCCCCccEEeccCCcCcccCChh----
Q 043765 242 ----------------------------------------------------IFNKSAVKEIDLFNNSLSGNLPSR---- 265 (452)
Q Consensus 242 ----------------------------------------------------l~~~~~L~~L~l~~n~~~~~~~~~---- 265 (452)
+..+++|++|++++|.+ +.+|..
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~ 329 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPF 329 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSS
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCc
Confidence 22233444555555444 233311
Q ss_pred ---------------hhcCCCCCcEEeccccceeec--CCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcC
Q 043765 266 ---------------TDLALPNIDYLGLAINRFSGT--IPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSN 327 (452)
Q Consensus 266 ---------------~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~ 327 (452)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ .|..+..++.|+.+ +..
T Consensus 330 L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~ 408 (606)
T 3vq2_A 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQH 408 (606)
T ss_dssp CCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTT
T ss_pred cceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCC
Confidence 111455666666666666654 36667778888888888887765 34677777887776 777
Q ss_pred CCCcccCC-chhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCc-ccchhccCCCccceeecccCcccc
Q 043765 328 NPLDGILP-SSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTG-PVLVTFDRLQNLQGLFLSSNKLAG 405 (452)
Q Consensus 328 ~~~~~~~p-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~~ 405 (452)
|.+.+..| ..+..+. +|+.|++++|++++..|..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|++++
T Consensus 409 n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 409 STLKRVTEFSAFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp SEEESTTTTTTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CccCCccChhhhhccc-cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 77777777 5677777 99999999999998888999999999999999999987 478889999999999999999999
Q ss_pred cChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCCceeccccC
Q 043765 406 SIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLNVAD 450 (452)
Q Consensus 406 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 450 (452)
..|..+..+++|+.|++++|++++..|..+..+++|++|+++.+.
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 889999999999999999999998889999999999999998764
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.6e-43 Score=359.50 Aligned_cols=371 Identities=23% Similarity=0.195 Sum_probs=224.7
Q ss_pred ceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 043765 55 SFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLST 134 (452)
Q Consensus 55 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 134 (452)
..+|++++|++++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 34899999999987777899999999999999999988888999999999999999999876666799999999999999
Q ss_pred CCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCcc--CCCCccEEEeeccccee
Q 043765 135 NRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIG--NFTSLQKISLIYNKLHG 212 (452)
Q Consensus 135 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~~~~ 212 (452)
|.+.+..|..+.. +++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.+
T Consensus 107 n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 107 NSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp SCCCCCCSCTTTT-CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CccCccChhHccc-cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 9998433344544 89999999999998877778888888999999988888755544333 34667777776666554
Q ss_pred cCCc---------------------------------------------------ccCCCC--CCCEEEccCCccccccc
Q 043765 213 EIPL---------------------------------------------------EVGNLR--NQDTLWLGSNNLVGIVL 239 (452)
Q Consensus 213 ~~~~---------------------------------------------------~~~~l~--~L~~L~l~~~~~~~~~~ 239 (452)
..|. .+..++ +|++|++++|.+.+..+
T Consensus 186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc
Confidence 4443 333332 26666666666666655
Q ss_pred ccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceee-----cCC----ccccCCCCCcEEEeeCccccee
Q 043765 240 STIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSG-----TIP----SFITNASNLTILEMGLNSFSGF 310 (452)
Q Consensus 240 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~----~~l~~~~~L~~L~L~~n~l~~~ 310 (452)
..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|...+ .+| ..|..+++|++|++++|.+.+.
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred ccccCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 6666666666666666665533332211 23333333332221110 001 1233344444444444444444
Q ss_pred CCccccCchhHHHh-----------------------------hcCCCCcccCCchhhcchhccceeecccccCcccCc-
Q 043765 311 IPNKIGNLRTLQTA-----------------------------LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIP- 360 (452)
Q Consensus 311 ~~~~l~~l~~L~~~-----------------------------~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~- 360 (452)
.+..+.++++|+.+ +..|.+.+..|..+..+. +|+.|++++|.+.+.++
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCEEECCS
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC-CCCEEeCCCCcCccccCc
Confidence 44444433333322 223334444444444444 55555555555554333
Q ss_pred ccccCCCCCCEEEccCCcCCccc--------------------------chhccCCCccceeecccCcccccChhhhcCC
Q 043765 361 QVISNLTNFTVLQLGGNELTGPV--------------------------LVTFDRLQNLQGLFLSSNKLAGSIPDDLCRL 414 (452)
Q Consensus 361 ~~~~~~~~L~~L~l~~n~i~~~~--------------------------~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 414 (452)
..+.++++|++|++++|++.+.. |..+..+++|+.|++++|++++..+..|.++
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 34445555555555555444333 3344444455555555555554444444555
Q ss_pred CCCCEEeCcCCccc
Q 043765 415 HRLDTLILDGNEFS 428 (452)
Q Consensus 415 ~~L~~L~l~~n~~~ 428 (452)
++|+.|++++|++.
T Consensus 504 ~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 504 EKLEILDLQHNNLA 517 (680)
T ss_dssp TTCCEEECCSSCCG
T ss_pred cccCEEeCCCCCcc
Confidence 55555555555543
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-41 Score=350.61 Aligned_cols=392 Identities=21% Similarity=0.202 Sum_probs=213.2
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
+|++++|++++..+.+|+.+++|++|++++|.+++..+.+|.++++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 77 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 67777777776555567777777777777777776666677777777777777777777767777777777777777777
Q ss_pred CcccCchHHhh-cCCCCCEEEccCccCCccCCc-----------------------------------------------
Q 043765 137 FSGELPETICN-YLPNLKALLLNNNMIHGKIPS----------------------------------------------- 168 (452)
Q Consensus 137 ~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~----------------------------------------------- 168 (452)
+++..+..+.. .+++|++|++++|.+.+..|.
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 76433333221 135556666655555433332
Q ss_pred ----cccCCC--CCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCccc------------------------
Q 043765 169 ----ILSKCK--QLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEV------------------------ 218 (452)
Q Consensus 169 ----~~~~l~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------------------------ 218 (452)
.|..++ +|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 222222 26666666666655555556666666666666666554444333
Q ss_pred ---------CCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcc-cCChhhhc--CCCCCcEEeccccceeec
Q 043765 219 ---------GNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSG-NLPSRTDL--ALPNIDYLGLAINRFSGT 286 (452)
Q Consensus 219 ---------~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~~--~~~~L~~L~l~~n~l~~~ 286 (452)
..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.. .++...+. ..++|+.|++++|++++.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 334444555555555555555555555555555555543210 11111100 112344444444444444
Q ss_pred CCccccCCCCCcEEEeeCcccceeCC-ccccCchhHHH------------------------h-hcCCCCc--ccCCchh
Q 043765 287 IPSFITNASNLTILEMGLNSFSGFIP-NKIGNLRTLQT------------------------A-LSNNPLD--GILPSSI 338 (452)
Q Consensus 287 ~~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~------------------------~-~~~~~~~--~~~p~~~ 338 (452)
.|.+|..+++|++|++++|.+.+.++ ..+.+++.|+. + +..|.+. +.+|..+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 44455555555555555555544332 23333333333 2 2222222 3445555
Q ss_pred hcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccc--------hhccCCCccceeecccCcccccChhh
Q 043765 339 GNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVL--------VTFDRLQNLQGLFLSSNKLAGSIPDD 410 (452)
Q Consensus 339 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~--------~~~~~~~~L~~L~l~~n~i~~~~~~~ 410 (452)
..+. +|+.|++++|++++..+..|.++++|++|++++|++++..+ ..+..+++|+.|++++|+++...+..
T Consensus 477 ~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 477 QPLR-NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555 (680)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCC-CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 5555 66666666666665555556666666666666666654321 12455566666666666665333334
Q ss_pred hcCCCCCCEEeCcCCcccccCCccccCCCCCCceecccc
Q 043765 411 LCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 411 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 449 (452)
|.++++|+.|++++|++++..+..+..+++|+.|+++.+
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence 566666666666666665433344555556665555543
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-43 Score=359.33 Aligned_cols=362 Identities=20% Similarity=0.289 Sum_probs=319.6
Q ss_pred CCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcC-------------------------------------------
Q 043765 77 SSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQL------------------------------------------- 113 (452)
Q Consensus 77 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------------------------------------- 113 (452)
.+++.|+|+++.+.|.+|.+++++++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5899999999999999999999999999999999843
Q ss_pred -----------------------------------cccCCccccCCCCCCEEECcCCCCccc-----------------C
Q 043765 114 -----------------------------------SGSLSSFTFNMSSMLVSDLSTNRFSGE-----------------L 141 (452)
Q Consensus 114 -----------------------------------~~~~~~~~~~l~~L~~L~l~~n~~~~~-----------------~ 141 (452)
++ +|..++++++|++|++++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 34 778899999999999999999975 8
Q ss_pred chHHh--hcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCcc-ccc-cCCCCccCC------CCccEEEeecccce
Q 043765 142 PETIC--NYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLND-LSG-AIPKEIGNF------TSLQKISLIYNKLH 211 (452)
Q Consensus 142 ~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~ 211 (452)
|..+. . +++|++|++++|.+.+.+|..|.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++
T Consensus 240 p~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 240 TEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TSCCCGGG-CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred chhhhhcc-cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 98887 7 9999999999999999999999999999999999998 887 788888776 99999999999999
Q ss_pred ecCCc--ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCC-CcEEeccccceeecCC
Q 043765 212 GEIPL--EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPN-IDYLGLAINRFSGTIP 288 (452)
Q Consensus 212 ~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~ 288 (452)
.+|. .++.+++|++|++++|.+.+..| .+..+++|+.|++++|.+. .+|..+. .+++ |++|++++|.++ .+|
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccc
Confidence 8888 89999999999999999997777 8899999999999999998 8887765 7888 999999999999 778
Q ss_pred ccccCCC--CCcEEEeeCcccceeCCcccc-------CchhHHHh-hcCCCCcccCCchhhc-chhccceeecccccCcc
Q 043765 289 SFITNAS--NLTILEMGLNSFSGFIPNKIG-------NLRTLQTA-LSNNPLDGILPSSIGN-LSISMERLYIFNCSISG 357 (452)
Q Consensus 289 ~~l~~~~--~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~~-~~~~~~~~~~p~~~~~-~~~~L~~L~L~~~~l~~ 357 (452)
..+..++ +|++|++++|.+.+..|..+. .+..|+.+ +..|.+. .+|..+.. ++ +|+.|++++|+++
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~-~L~~L~Ls~N~l~- 470 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGS-PLSSINLMGNMLT- 470 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTC-CCSEEECCSSCCS-
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCC-CCCEEECCCCCCC-
Confidence 8777655 899999999999998888877 66667665 6777777 67766654 55 9999999999999
Q ss_pred cCccc-ccC-------CCCCCEEEccCCcCCcccchhcc--CCCccceeecccCcccccChhhhcCCCCCCEEeC-----
Q 043765 358 NIPQV-ISN-------LTNFTVLQLGGNELTGPVLVTFD--RLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLIL----- 422 (452)
Q Consensus 358 ~~~~~-~~~-------~~~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l----- 422 (452)
.+|.. +.. +++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcc
Confidence 55554 332 239999999999999 5677776 89999999999999997 8999999999999999
Q ss_pred -cCCcccccCCccccCCCCCCceeccccC
Q 043765 423 -DGNEFSESIPTCLGNLTSLEGSLLNVAD 450 (452)
Q Consensus 423 -~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 450 (452)
++|.+.+.+|..+..+++|++|+++.|.
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCc
Confidence 5678888999999999999999998764
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-42 Score=360.62 Aligned_cols=390 Identities=19% Similarity=0.175 Sum_probs=255.1
Q ss_pred ceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcC-ChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECc
Q 043765 55 SFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDI-PSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLS 133 (452)
Q Consensus 55 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 133 (452)
..+|+|++|.+++..|..|..+++|++|++++|...+.+ |.+|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 348999999999988999999999999999999665555 7889999999999999999998889999999999999999
Q ss_pred CCCCcccCchH-HhhcCCCCCEEEccCccCCccCC-ccccCCCCCCEEEccCccccccCCCCccCC--CCccEEEeeccc
Q 043765 134 TNRFSGELPET-ICNYLPNLKALLLNNNMIHGKIP-SILSKCKQLQQLNLGLNDLSGAIPKEIGNF--TSLQKISLIYNK 209 (452)
Q Consensus 134 ~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~ 209 (452)
+|.+++.+|.. .+..+++|++|++++|.+.+..+ ..|+++++|++|++++|.+.+..+..+..+ ++|+.|+++.|.
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 99998766654 23348999999999999886544 578999999999999998877666666554 555555555555
Q ss_pred ceecCCcccCCC--------------------------------------------------------------------
Q 043765 210 LHGEIPLEVGNL-------------------------------------------------------------------- 221 (452)
Q Consensus 210 ~~~~~~~~~~~l-------------------------------------------------------------------- 221 (452)
+.+..+..++.+
T Consensus 186 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 544333333322
Q ss_pred CCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEE
Q 043765 222 RNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILE 301 (452)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 301 (452)
+++++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+++..+.+|.++++|++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 34555555555555555555666666666666666665333333 23566666666666666655566666666666666
Q ss_pred eeCcccceeCCccccCchhHHHh-hcCCCCccc------------------CCc----------------------hhhc
Q 043765 302 MGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGI------------------LPS----------------------SIGN 340 (452)
Q Consensus 302 L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~------------------~p~----------------------~~~~ 340 (452)
+++|.+.+..+..+..+++|+.+ +..|.+.+. +|. .+..
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~ 424 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence 66666665555556555555554 444433321 000 0112
Q ss_pred chhccceeecccccCcccCcc-cccCCCCCCEEEccCCcCC-----cccchhccCCCccceeecccCcccccChhhhcCC
Q 043765 341 LSISMERLYIFNCSISGNIPQ-VISNLTNFTVLQLGGNELT-----GPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRL 414 (452)
Q Consensus 341 ~~~~L~~L~L~~~~l~~~~~~-~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 414 (452)
++ +|+.|++++|++++..+. .+..+++|+.|++++|.+. +..+..|..+++|+.|++++|++++..|..|..+
T Consensus 425 l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 503 (844)
T 3j0a_A 425 VP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503 (844)
T ss_dssp CT-TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred CC-ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence 22 455555555554432221 2233445555555555543 2223445666777777777777776666667777
Q ss_pred CCCCEEeCcCCcccccCCccccCCCCCCceeccc
Q 043765 415 HRLDTLILDGNEFSESIPTCLGNLTSLEGSLLNV 448 (452)
Q Consensus 415 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 448 (452)
++|+.|++++|++++..+..+. ++|+.|+++.
T Consensus 504 ~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~ 535 (844)
T 3j0a_A 504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISR 535 (844)
T ss_dssp CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEE
T ss_pred hhhheeECCCCCCCccChhhhh--ccccEEECCC
Confidence 7777777777777654343333 4555555544
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=338.19 Aligned_cols=374 Identities=22% Similarity=0.235 Sum_probs=251.6
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
++++++|++++ +|..+. +++++|++++|.+++..|.+|.++++|++|++++|++++..|..|.++++|++|++++|.
T Consensus 4 ~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 45666666653 444343 566666666666655555556666666666666666665555566666666666666666
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCc-cCCccccCCCCCCEEEccCccccccCCCCccCCCCc--cEEEeecccc--e
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHG-KIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSL--QKISLIYNKL--H 211 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~~--~ 211 (452)
++ .+|.. . +++|++|++++|.+.+ .+|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 81 l~-~lp~~--~-l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 81 LV-KISCH--P-TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CC-EEECC--C-CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ee-ecCcc--c-cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 65 45544 2 5666666666666554 245556666666666666665543 234444444 5555555555 3
Q ss_pred ecCCcccCC--------------------------------------------------------CC-------------
Q 043765 212 GEIPLEVGN--------------------------------------------------------LR------------- 222 (452)
Q Consensus 212 ~~~~~~~~~--------------------------------------------------------l~------------- 222 (452)
+..|..+.. ++
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 333333322 22
Q ss_pred --------------CCCEEEccCCcccccccccc-----cCCCCccEEeccCCcCcccCC-hhhhc--CCCCCcEEeccc
Q 043765 223 --------------NQDTLWLGSNNLVGIVLSTI-----FNKSAVKEIDLFNNSLSGNLP-SRTDL--ALPNIDYLGLAI 280 (452)
Q Consensus 223 --------------~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~-~~~~~--~~~~L~~L~l~~ 280 (452)
+|++|++++|.+.+..|..+ .+++.|+.+++++|.+ .+| ..+.. ...+|+.|++++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 45555555555555555555 5566666666666655 344 22221 114577777777
Q ss_pred cceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcc--cCCchhhcchhccceeecccccCcc
Q 043765 281 NRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDG--ILPSSIGNLSISMERLYIFNCSISG 357 (452)
Q Consensus 281 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~--~~p~~~~~~~~~L~~L~L~~~~l~~ 357 (452)
|.+.... .+..+++|++|++++|.+.+..|..+..++.|+.+ +..|.+.+ .+|..+..++ +|+.|++++|++.+
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSY 388 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBC
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCc
Confidence 7765322 13678899999999999988888888888888876 77777776 5667788887 99999999999997
Q ss_pred cCcc-cccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCcc-c
Q 043765 358 NIPQ-VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTC-L 435 (452)
Q Consensus 358 ~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~ 435 (452)
.+|. .+..+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|++. .+|.. +
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 464 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF 464 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHh
Confidence 5665 478899999999999999887776654 79999999999999 78888889999999999999997 57765 8
Q ss_pred cCCCCCCceecccc
Q 043765 436 GNLTSLEGSLLNVA 449 (452)
Q Consensus 436 ~~~~~L~~L~l~~~ 449 (452)
..+++|++|+++.+
T Consensus 465 ~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 465 DRLTSLQKIWLHTN 478 (520)
T ss_dssp TTCTTCCEEECCSS
T ss_pred ccCCcccEEECcCC
Confidence 99999999999864
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-42 Score=357.01 Aligned_cols=365 Identities=17% Similarity=0.203 Sum_probs=310.4
Q ss_pred CCCCccccCCcCCCCCCCCCEEeCCCCcCCC-----------------cCChhhh--CCCCCCEEeCCCCcCcccCCccc
Q 043765 61 SSFNLQGTIPPQLGNLSSLVTLDLSQNKLSG-----------------DIPSSIF--TMHTLKFLYFSDNQLSGSLSSFT 121 (452)
Q Consensus 61 ~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~ 121 (452)
..|++++ +|..|.++++|++|++++|.+++ .+|..+. ++++|++|++++|.+.+.+|..+
T Consensus 433 ~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 433 LTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred ccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence 4488888 89999999999999999999998 3888877 99999999999999999999999
Q ss_pred cCCCCCCEEECcCCC-Ccc-cCchHHhh------cCCCCCEEEccCccCCccCCc--cccCCCCCCEEEccCccccccCC
Q 043765 122 FNMSSMLVSDLSTNR-FSG-ELPETICN------YLPNLKALLLNNNMIHGKIPS--ILSKCKQLQQLNLGLNDLSGAIP 191 (452)
Q Consensus 122 ~~l~~L~~L~l~~n~-~~~-~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~ 191 (452)
.++++|++|++++|. +++ .+|..+.. .+++|++|++++|.+. .+|. .+.++++|++|++++|.+. .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 999999999999998 887 78987765 1349999999999999 7888 8999999999999999998 788
Q ss_pred CCccCCCCccEEEeecccceecCCcccCCCCC-CCEEEccCCcccccccccccCCCC--ccEEeccCCcCcccCChhh--
Q 043765 192 KEIGNFTSLQKISLIYNKLHGEIPLEVGNLRN-QDTLWLGSNNLVGIVLSTIFNKSA--VKEIDLFNNSLSGNLPSRT-- 266 (452)
Q Consensus 192 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~n~~~~~~~~~~-- 266 (452)
.++.+++|+.|++++|.+. .+|..+..+++ |++|++++|.+.. .|..+...+. |+.|++++|.+.+.+|...
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 8999999999999999998 88888999999 9999999999994 4566666654 9999999999987655321
Q ss_pred --hcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCcccc-------CchhHHHh-hcCCCCcccCCc
Q 043765 267 --DLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIG-------NLRTLQTA-LSNNPLDGILPS 336 (452)
Q Consensus 267 --~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~~-~~~~~~~~~~p~ 336 (452)
....++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+. +++.|+.+ ++.|.+. .+|.
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 11456899999999999954444556899999999999999844433333 23367665 7777777 7888
Q ss_pred hhh--cchhccceeecccccCcccCcccccCCCCCCEEEccC------CcCCcccchhccCCCccceeecccCcccccCh
Q 043765 337 SIG--NLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGG------NELTGPVLVTFDRLQNLQGLFLSSNKLAGSIP 408 (452)
Q Consensus 337 ~~~--~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~------n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 408 (452)
.+. .++ +|+.|++++|++++ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|++++|++ +.+|
T Consensus 746 ~l~~~~l~-~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 746 DFRATTLP-YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp GGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred HhhhccCC-CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 887 777 99999999999996 788899999999999976 788889999999999999999999999 5888
Q ss_pred hhhcCCCCCCEEeCcCCcccccCCccccC
Q 043765 409 DDLCRLHRLDTLILDGNEFSESIPTCLGN 437 (452)
Q Consensus 409 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 437 (452)
..+. ++|+.|+|++|++...-+..+..
T Consensus 823 ~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 823 EKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp SCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred Hhhc--CCCCEEECCCCCCCccChHHccc
Confidence 7765 79999999999997644444433
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-41 Score=339.71 Aligned_cols=381 Identities=21% Similarity=0.213 Sum_probs=283.6
Q ss_pred ceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 043765 55 SFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLST 134 (452)
Q Consensus 55 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 134 (452)
..+|++++|++++..|..|..+++|++|++++|++++..|.+|.++++|++|++++|++.+..+..+.++++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 44899999999988888899999999999999999988888899999999999999999987777799999999999999
Q ss_pred CCCcc-cCchHHhhcCCCCCEEEccCccCCccC-CccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeeccccee
Q 043765 135 NRFSG-ELPETICNYLPNLKALLLNNNMIHGKI-PSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHG 212 (452)
Q Consensus 135 n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 212 (452)
|.+++ ..|..+.. +++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..++.+++|++|++++|.+.
T Consensus 108 n~l~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~- 185 (549)
T 2z81_A 108 NPYQTLGVTSLFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA- 185 (549)
T ss_dssp CCCSSSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-
T ss_pred Ccccccchhhhhhc-cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-
Confidence 99874 34555555 899999999999844344 467889999999999999998888888999999999999998875
Q ss_pred cCCcc-cCCCCCCCEEEccCCcccccc--c-ccccCC-------------------------------------------
Q 043765 213 EIPLE-VGNLRNQDTLWLGSNNLVGIV--L-STIFNK------------------------------------------- 245 (452)
Q Consensus 213 ~~~~~-~~~l~~L~~L~l~~~~~~~~~--~-~~l~~~------------------------------------------- 245 (452)
.++.. +..+++|++|++++|.+.+.. + .....+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 33333 356889999999998887642 0 011111
Q ss_pred --------------------------------------------CCccEEeccCCcCcccCChhhhcCCCCCcEEecccc
Q 043765 246 --------------------------------------------SAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAIN 281 (452)
Q Consensus 246 --------------------------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 281 (452)
.+|+.|++++|.+. .+|...+..+++|+.|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 23444444444443 455555445677777777777
Q ss_pred ceeecCC---ccccCCCCCcEEEeeCcccceeCC--ccccCchhHHHh-hcCCCCcccCCchhhcchhccceeecccccC
Q 043765 282 RFSGTIP---SFITNASNLTILEMGLNSFSGFIP--NKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIFNCSI 355 (452)
Q Consensus 282 ~l~~~~~---~~l~~~~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l 355 (452)
.+++..| ..+..+++|++|++++|.+.+..+ ..+..++.|+.+ ++.|.+. .+|..+..+. +|+.|++++|++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~-~L~~L~Ls~N~l 422 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE-KMRFLNLSSTGI 422 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT-TCCEEECTTSCC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc-cccEEECCCCCc
Confidence 7766443 235667777777777777654432 335555555554 5555555 5666666655 777777777776
Q ss_pred cccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCccc
Q 043765 356 SGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCL 435 (452)
Q Consensus 356 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 435 (452)
+ .+|..+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|+.+
T Consensus 423 ~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 423 R-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp S-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred c-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 6 344332 257777777777777632 46899999999999998 6675 5678999999999999998888889
Q ss_pred cCCCCCCceecccc
Q 043765 436 GNLTSLEGSLLNVA 449 (452)
Q Consensus 436 ~~~~~L~~L~l~~~ 449 (452)
..+++|+.|+++.|
T Consensus 494 ~~l~~L~~L~l~~N 507 (549)
T 2z81_A 494 DRLTSLQKIWLHTN 507 (549)
T ss_dssp GGCTTCCEEECCSS
T ss_pred hcCcccCEEEecCC
Confidence 99999999999864
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.3e-41 Score=337.83 Aligned_cols=371 Identities=22% Similarity=0.222 Sum_probs=310.2
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
+|++++|++++..+..|+++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..+..++++++|++|++++|.
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 135 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc
Confidence 89999999998888889999999999999999998878899999999999999999987666679999999999999999
Q ss_pred Ccc-cCchHHhhcCCCCCEEEccCccCCccCCccccCCCCC----CEEEccCcccccc----------------------
Q 043765 137 FSG-ELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQL----QQLNLGLNDLSGA---------------------- 189 (452)
Q Consensus 137 ~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~n~~~~~---------------------- 189 (452)
+.+ .+|..+.+ +++|++|++++|.+.+..+..+..+++| +.+++++|.+.+.
T Consensus 136 l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 214 (570)
T 2z63_A 136 IQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 214 (570)
T ss_dssp CCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCT
T ss_pred cceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccc
Confidence 985 46888777 9999999999998886666666666665 5666666654322
Q ss_pred -----------------------------------------------------------CCCCccCCCCccEEEeecccc
Q 043765 190 -----------------------------------------------------------IPKEIGNFTSLQKISLIYNKL 210 (452)
Q Consensus 190 -----------------------------------------------------------~~~~~~~l~~L~~L~l~~n~~ 210 (452)
.+..+..+++|++|++++|.+
T Consensus 215 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 294 (570)
T 2z63_A 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294 (570)
T ss_dssp THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence 233455567888888888887
Q ss_pred eecCCcccCCCCCCCEEEccCCcccccccccc-------------------cCCCCccEEeccCCcCcccC--ChhhhcC
Q 043765 211 HGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTI-------------------FNKSAVKEIDLFNNSLSGNL--PSRTDLA 269 (452)
Q Consensus 211 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-------------------~~~~~L~~L~l~~n~~~~~~--~~~~~~~ 269 (452)
. .+|..+..+ +|++|++++|.+...+...+ ..+++|+.|++++|.+.+.. +.... .
T Consensus 295 ~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~ 371 (570)
T 2z63_A 295 E-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-G 371 (570)
T ss_dssp C-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHH-T
T ss_pred h-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccc-c
Confidence 7 577777776 77777777777664433211 46778899999999887433 44444 8
Q ss_pred CCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCC-ccccCchhHHHh-hcCCCCcccCCchhhcchhccce
Q 043765 270 LPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIP-NKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMER 347 (452)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~ 347 (452)
+++|++|++++|.+++..+. +..+++|++|++++|.+.+..+ ..+..++.|+.+ +..|.+.+..|..+..++ +|+.
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~ 449 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEV 449 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCE
T ss_pred cCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC-cCcE
Confidence 99999999999999976555 9999999999999999987766 567888888876 788888888898888888 9999
Q ss_pred eecccccCc-ccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCc
Q 043765 348 LYIFNCSIS-GNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNE 426 (452)
Q Consensus 348 L~L~~~~l~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 426 (452)
|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|+
T Consensus 450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999999998 5788899999999999999999999889999999999999999999998888889999999999999999
Q ss_pred ccccCCc
Q 043765 427 FSESIPT 433 (452)
Q Consensus 427 ~~~~~~~ 433 (452)
+.+..|.
T Consensus 530 ~~~~~~~ 536 (570)
T 2z63_A 530 WDCSCPR 536 (570)
T ss_dssp BCCCTTT
T ss_pred ccCCCcc
Confidence 9887653
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.9e-41 Score=328.15 Aligned_cols=352 Identities=18% Similarity=0.197 Sum_probs=249.3
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcC-ChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDI-PSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (452)
+|++++|++++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|++.+..|..+.++++|++|++++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 6777777777766777777777777777777765433 456777777777777777777666777777777777777777
Q ss_pred CCcccCchH-HhhcCCCCCEEEccCccCCccCCcc-ccCCCCCCEEEccCccccccCCCCccCC--CCccEEEeecccce
Q 043765 136 RFSGELPET-ICNYLPNLKALLLNNNMIHGKIPSI-LSKCKQLQQLNLGLNDLSGAIPKEIGNF--TSLQKISLIYNKLH 211 (452)
Q Consensus 136 ~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~ 211 (452)
.+++.++.. .+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+ .+|+.|++++|.+.
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~ 193 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccc
Confidence 776544433 2223777777777777777655554 6677777777777777776666666655 56777777777766
Q ss_pred ecCCcc--------cCCCCCCCEEEccCCcccccccccccC---CCCccEEeccCCcCcccCC---------hh--hhcC
Q 043765 212 GEIPLE--------VGNLRNQDTLWLGSNNLVGIVLSTIFN---KSAVKEIDLFNNSLSGNLP---------SR--TDLA 269 (452)
Q Consensus 212 ~~~~~~--------~~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~n~~~~~~~---------~~--~~~~ 269 (452)
+..+.. +..+++|++|++++|.+.+..+..+.. ..+|+.|++++|...+... .. ....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGT
T ss_pred ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccc
Confidence 433222 224566777777777776665554443 2667777777664432110 00 0112
Q ss_pred CCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceee
Q 043765 270 LPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLY 349 (452)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~ 349 (452)
.++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+..+. .+. +|+.|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----------------------~l~-~L~~L~ 329 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-----------------------GLT-HLLKLN 329 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-----------------------TCT-TCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc-----------------------Ccc-cCCEEE
Confidence 35677777777777777777777777777777777777665555444 333 889999
Q ss_pred cccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccc
Q 043765 350 IFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSE 429 (452)
Q Consensus 350 L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 429 (452)
+++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 99999987778888889999999999999988888888899999999999999997666678889999999999999988
Q ss_pred cCC
Q 043765 430 SIP 432 (452)
Q Consensus 430 ~~~ 432 (452)
..|
T Consensus 410 ~~~ 412 (455)
T 3v47_A 410 SCP 412 (455)
T ss_dssp CTT
T ss_pred CCC
Confidence 766
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-40 Score=326.61 Aligned_cols=364 Identities=21% Similarity=0.215 Sum_probs=307.9
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSL-SSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n 135 (452)
.++.++++++. +|. + .+++++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 57888888874 554 3 378999999999999888999999999999999999997444 668999999999999999
Q ss_pred CCcccCchHHhhcCCCCCEEEccCccCCccCCcc--ccCCCCCCEEEccCccccccCCCC-ccCCCCccEEEeeccccee
Q 043765 136 RFSGELPETICNYLPNLKALLLNNNMIHGKIPSI--LSKCKQLQQLNLGLNDLSGAIPKE-IGNFTSLQKISLIYNKLHG 212 (452)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~ 212 (452)
.+++..|..+.. +++|++|++++|.+.+..+.. |..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+
T Consensus 90 ~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 999666777766 999999999999998654444 899999999999999999777765 8899999999999999998
Q ss_pred cCCcccCCC--CCCCEEEccCCccccccccc--------ccCCCCccEEeccCCcCcccCChhhhc--CCCCCcEEeccc
Q 043765 213 EIPLEVGNL--RNQDTLWLGSNNLVGIVLST--------IFNKSAVKEIDLFNNSLSGNLPSRTDL--ALPNIDYLGLAI 280 (452)
Q Consensus 213 ~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~ 280 (452)
..+..+..+ ..++.+++++|.+.+..+.. +..+++|+.|++++|.+.+..+..... ..++++.+++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 888888776 68899999999998776543 336688999999999998777665542 248899999998
Q ss_pred cceeec----------CCcccc--CCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhcccee
Q 043765 281 NRFSGT----------IPSFIT--NASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERL 348 (452)
Q Consensus 281 n~l~~~----------~~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L 348 (452)
|.+.+. .+..+. ..++|++|++++|.+.+..+..+..+ . +|+.|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-----------------------~-~L~~L 304 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-----------------------T-DLEQL 304 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-----------------------T-TCCEE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-----------------------C-CCCEE
Confidence 865432 111222 23689999999998887766655433 3 89999
Q ss_pred ecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCccc
Q 043765 349 YIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFS 428 (452)
Q Consensus 349 ~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 428 (452)
++++|++.+..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++
T Consensus 305 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 99999999888989999999999999999999988999999999999999999999988999999999999999999998
Q ss_pred ccCCccccCCCCCCceecccc
Q 043765 429 ESIPTCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 429 ~~~~~~~~~~~~L~~L~l~~~ 449 (452)
+..++.+..+++|++|+++.+
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSS
T ss_pred cCCHhHhccCCcccEEEccCC
Confidence 755667899999999999864
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-41 Score=351.44 Aligned_cols=388 Identities=21% Similarity=0.196 Sum_probs=299.6
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSL-SSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n 135 (452)
..+.++++++. +|. -.+++++|++++|.+++..+.+|.++++|++|++++|...+.+ |..|.++++|++|++++|
T Consensus 8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 68899999986 454 4579999999999999888999999999999999999665554 788999999999999999
Q ss_pred CCcccCchHHhhcCCCCCEEEccCccCCccCCcc--ccCCCCCCEEEccCccccccCC-CCccCCCCccEEEeeccccee
Q 043765 136 RFSGELPETICNYLPNLKALLLNNNMIHGKIPSI--LSKCKQLQQLNLGLNDLSGAIP-KEIGNFTSLQKISLIYNKLHG 212 (452)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~ 212 (452)
.+.+..|..+.. +++|++|++++|.+.+..+.. |.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+.+
T Consensus 84 ~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccC-CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 999666777766 999999999999998766654 9999999999999999986654 578999999999999999998
Q ss_pred cCCcccCCC--CCCCEEEccCCcccccccccccCCCC------ccEEeccCCcCcccCChhhhc----------------
Q 043765 213 EIPLEVGNL--RNQDTLWLGSNNLVGIVLSTIFNKSA------VKEIDLFNNSLSGNLPSRTDL---------------- 268 (452)
Q Consensus 213 ~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~n~~~~~~~~~~~~---------------- 268 (452)
..+..+..+ ++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+.+..+.....
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 888888877 89999999999998877766666554 888998888765444332221
Q ss_pred ---------------------CCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hc
Q 043765 269 ---------------------ALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LS 326 (452)
Q Consensus 269 ---------------------~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~ 326 (452)
..++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+.+++.|+.+ ++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 12578888888888887777778888888888888888887777777777777765 67
Q ss_pred CCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCccc-----------------------
Q 043765 327 NNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPV----------------------- 383 (452)
Q Consensus 327 ~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~----------------------- 383 (452)
.|.+.+..|..+..++ +|+.|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 323 ~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~ 401 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401 (844)
T ss_dssp SCCCSCCCSCSCSSCT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCT
T ss_pred CCCCCccCHHHhcCCC-CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccc
Confidence 7777777677777776 7888888887777666666777777777777777665311
Q ss_pred -----------------chhccCCCccceeecccCccccc------------------------------ChhhhcCCCC
Q 043765 384 -----------------LVTFDRLQNLQGLFLSSNKLAGS------------------------------IPDDLCRLHR 416 (452)
Q Consensus 384 -----------------~~~~~~~~~L~~L~l~~n~i~~~------------------------------~~~~~~~l~~ 416 (452)
+..+..+++|+.|++++|++++. .+..|.++++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 00122455555666555555432 2234566677
Q ss_pred CCEEeCcCCcccccCCccccCCCCCCceeccccC
Q 043765 417 LDTLILDGNEFSESIPTCLGNLTSLEGSLLNVAD 450 (452)
Q Consensus 417 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 450 (452)
|+.|++++|.+++..|..+..+++|+.|+++.+.
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCC
Confidence 7777777777776667777888888888887653
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.3e-40 Score=330.84 Aligned_cols=172 Identities=28% Similarity=0.348 Sum_probs=133.2
Q ss_pred CCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcc--cCCchhhcchhccce
Q 043765 271 PNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDG--ILPSSIGNLSISMER 347 (452)
Q Consensus 271 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~--~~p~~~~~~~~~L~~ 347 (452)
.+++.|++++|.+.... ....+++|++|++++|.+.+..|..+..++.|+.+ +..|.+.+ .+|..+..++ +|+.
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLET 407 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCE
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-CCCE
Confidence 45677777777665321 12577888888888888887777777777777776 66666665 3345566776 9999
Q ss_pred eecccccCcccCcc-cccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCc
Q 043765 348 LYIFNCSISGNIPQ-VISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNE 426 (452)
Q Consensus 348 L~L~~~~l~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 426 (452)
|++++|++++.+|. .+..+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence 99999999974554 577889999999999999876666543 68999999999998 677777799999999999999
Q ss_pred ccccCCcc-ccCCCCCCceecccc
Q 043765 427 FSESIPTC-LGNLTSLEGSLLNVA 449 (452)
Q Consensus 427 ~~~~~~~~-~~~~~~L~~L~l~~~ 449 (452)
++ .+|.. +..+++|+.|+++.+
T Consensus 485 l~-~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 485 LK-SVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CC-CCCTTSTTTCTTCCCEECCSC
T ss_pred CC-CCCHHHHhcCCCCCEEEecCC
Confidence 97 57765 889999999998864
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=324.41 Aligned_cols=360 Identities=21% Similarity=0.244 Sum_probs=299.9
Q ss_pred ceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 043765 55 SFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLST 134 (452)
Q Consensus 55 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 134 (452)
..+|++++|.+++..|..|..+++|++|++++|++++..|.+|.++++|++|++++|+++ .+|.. .+++|++|++++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence 448999999999888888999999999999999999888999999999999999999998 45554 899999999999
Q ss_pred CCCcc-cCchHHhhcCCCCCEEEccCccCCccCCccccCCCCC--CEEEccCccc--cccCCCCccCCC-----------
Q 043765 135 NRFSG-ELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQL--QQLNLGLNDL--SGAIPKEIGNFT----------- 198 (452)
Q Consensus 135 n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~~~~~l~----------- 198 (452)
|.+++ .+|..+.. +++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 100 N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 100 NAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred Cccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 99986 46777777 9999999999999875 456777777 9999999988 555665555432
Q ss_pred ------------------------------------------------------------------------CccEEEee
Q 043765 199 ------------------------------------------------------------------------SLQKISLI 206 (452)
Q Consensus 199 ------------------------------------------------------------------------~L~~L~l~ 206 (452)
+|++|+++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 78888888
Q ss_pred cccceecCCccc-----CCCCCCCEEEccCCcccccccccccCC---CCccEEeccCCcCcccCChhhhcCCCCCcEEec
Q 043765 207 YNKLHGEIPLEV-----GNLRNQDTLWLGSNNLVGIVLSTIFNK---SAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGL 278 (452)
Q Consensus 207 ~n~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 278 (452)
+|.+.+.+|..+ +.++.|+.+++++|.+ ..+...+..+ .+|+.|++++|.+.+.. ....+++|++|++
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L 331 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML---CPSKISPFLHLDF 331 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEEC
T ss_pred cccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc---chhhCCcccEEEe
Confidence 888888888888 8899999999999988 4332333333 67999999999876322 1137889999999
Q ss_pred cccceeecCCccccCCCCCcEEEeeCcccce--eCCccccCchhHHHh-hcCCCCcccCCch-hhcchhccceeeccccc
Q 043765 279 AINRFSGTIPSFITNASNLTILEMGLNSFSG--FIPNKIGNLRTLQTA-LSNNPLDGILPSS-IGNLSISMERLYIFNCS 354 (452)
Q Consensus 279 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~~-~~~~~~~~~~p~~-~~~~~~~L~~L~L~~~~ 354 (452)
++|.+++..|..+..+++|++|++++|.+.+ ..|..+..++.|+.+ ++.|.+.+.+|.. +..+. +|+.|++++|+
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~-~L~~L~Ls~N~ 410 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK-SLLSLNMSSNI 410 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT-TCCEEECCSSC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc-cCCEEECcCCC
Confidence 9999998888889999999999999999986 455667788888776 7888888767765 45555 99999999999
Q ss_pred CcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhh-hcCCCCCCEEeCcCCccccc
Q 043765 355 ISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDD-LCRLHRLDTLILDGNEFSES 430 (452)
Q Consensus 355 l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~~ 430 (452)
+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|.. +..+++|+.|++++|++...
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 9888777664 79999999999999 566666699999999999999994 5554 89999999999999999764
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.9e-40 Score=329.54 Aligned_cols=365 Identities=19% Similarity=0.184 Sum_probs=294.9
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcc-cCCccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSG-SLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n 135 (452)
+|++++|++++..|..|..+++|++|++++|++++..+..|.++++|++|++++|.+.+ ..+..+.++++|++|++++|
T Consensus 54 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 54 VLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred EEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCC
Confidence 89999999999999999999999999999999998777789999999999999999986 35678999999999999999
Q ss_pred CCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecC-
Q 043765 136 RFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEI- 214 (452)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~- 214 (452)
.+.+.+|...+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..
T Consensus 134 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (549)
T 2z81_A 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213 (549)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCC
T ss_pred ccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccc
Confidence 9655777554445999999999999999889999999999999999999986332223456899999999999876421
Q ss_pred -Cc-ccCC------------------------------------------------------------------------
Q 043765 215 -PL-EVGN------------------------------------------------------------------------ 220 (452)
Q Consensus 215 -~~-~~~~------------------------------------------------------------------------ 220 (452)
+. ....
T Consensus 214 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 293 (549)
T 2z81_A 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293 (549)
T ss_dssp CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence 00 0011
Q ss_pred ---------------CCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChh--hhcCCCCCcEEeccccce
Q 043765 221 ---------------LRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSR--TDLALPNIDYLGLAINRF 283 (452)
Q Consensus 221 ---------------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~l~~n~l 283 (452)
.++++++++++|.+...+...+.++++|+.|++++|.+.+.++.. ....+++|+.|++++|++
T Consensus 294 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 373 (549)
T 2z81_A 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373 (549)
T ss_dssp SCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC
T ss_pred chhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc
Confidence 123445555555554443333457899999999999998765432 234789999999999999
Q ss_pred eecCC--ccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchhccceeecccccCcccCc
Q 043765 284 SGTIP--SFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIP 360 (452)
Q Consensus 284 ~~~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~ 360 (452)
++..+ ..+..+++|++|++++|.+. .+|..+..++.|+.+ ++.|.+. .+|..+. .+|+.|++++|++++..
T Consensus 374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~---~~L~~L~Ls~N~l~~~~- 447 (549)
T 2z81_A 374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP---QTLEVLDVSNNNLDSFS- 447 (549)
T ss_dssp CCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC---TTCSEEECCSSCCSCCC-
T ss_pred cccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc---CCceEEECCCCChhhhc-
Confidence 86543 46889999999999999998 567777888888776 6666654 3443332 38999999999998542
Q ss_pred ccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCC
Q 043765 361 QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIP 432 (452)
Q Consensus 361 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 432 (452)
..+++|++|++++|+++. +|. ...+++|+.|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 448 ---~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 ---LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---ccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 578999999999999995 444 3578999999999999999888889999999999999999987655
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-38 Score=325.58 Aligned_cols=390 Identities=20% Similarity=0.173 Sum_probs=277.6
Q ss_pred ceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 043765 55 SFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLST 134 (452)
Q Consensus 55 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 134 (452)
..+|||++|++++..+.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|++++..+..|.++++|++|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 34899999999988888899999999999999999987788899999999999999999877778899999999999999
Q ss_pred CCCcccCchHHhhcCCCCCEEEccCccCCc-cCCccccCCCCCCEEEccCccccccCCCCccCCCCcc----EEEeeccc
Q 043765 135 NRFSGELPETICNYLPNLKALLLNNNMIHG-KIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQ----KISLIYNK 209 (452)
Q Consensus 135 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~l~~n~ 209 (452)
|.++ .++...+..+++|++|++++|.+.. ..|..+..+++|++|++++|.+.+..+..+..+.+++ .++++.|.
T Consensus 134 N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 134 TNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp SCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 9998 5665544448999999999998875 3567788899999999999988765554443322211 22222222
Q ss_pred ceecCCc-------------------------------------------------------------------------
Q 043765 210 LHGEIPL------------------------------------------------------------------------- 216 (452)
Q Consensus 210 ~~~~~~~------------------------------------------------------------------------- 216 (452)
+....+.
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 2110000
Q ss_pred ------------------------------ccCCCCCCCEEEccCCcccccccc-------------------cccCCCC
Q 043765 217 ------------------------------EVGNLRNQDTLWLGSNNLVGIVLS-------------------TIFNKSA 247 (452)
Q Consensus 217 ------------------------------~~~~l~~L~~L~l~~~~~~~~~~~-------------------~l~~~~~ 247 (452)
.+.....++.|++.++.+...... ....+++
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 011112233333333333222111 1112334
Q ss_pred ccEEeccCCcCcc--cCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCC-ccccCchhHHHh
Q 043765 248 VKEIDLFNNSLSG--NLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIP-NKIGNLRTLQTA 324 (452)
Q Consensus 248 L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~~ 324 (452)
|+.+++++|.+.. ..+.... ...+++.+++..+.+.. .+..+..+++|+.+++..+......+ ..+..+..++..
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDF-GTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHH-SCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccchhhccccccccccccchh-hhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccc
Confidence 4444444444321 1222222 44455555555554443 23345567777777777665544433 345555555544
Q ss_pred -hcCCCCcccCCchhhcchhccceeecccccCc-ccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCc
Q 043765 325 -LSNNPLDGILPSSIGNLSISMERLYIFNCSIS-GNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNK 402 (452)
Q Consensus 325 -~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 402 (452)
+..|.+.+..|..+.... .++.|++++|.+. +..|..|..+++|++|++++|++++..|..|..+++|++|+|++|+
T Consensus 451 ~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp ECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cccccccccccccccccch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 667777777777777777 9999999999754 4577889999999999999999999999999999999999999999
Q ss_pred ccccChhhhcCCCCCCEEeCcCCcccccCCccccCC-CCCCceeccc
Q 043765 403 LAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNL-TSLEGSLLNV 448 (452)
Q Consensus 403 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~ 448 (452)
+++..|..|..+++|+.|++++|++++..|+.+.++ ++|++|+++.
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 998888899999999999999999999889999888 6899999985
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.9e-39 Score=324.49 Aligned_cols=359 Identities=21% Similarity=0.221 Sum_probs=244.1
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
+|++++|++++..|..|..+++|++|++++|++++..|.+|.++++|++|++++|+++ .+|.. .+++|++|++++|.
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFND 132 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSC
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCC
Confidence 6777777777666666777777777777777777666666777777777777777776 34433 67777777777777
Q ss_pred Ccc-cCchHHhhcCCCCCEEEccCccCCccCCccccCCCCC--CEEEccCccc--cccCCCCccC---------------
Q 043765 137 FSG-ELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQL--QQLNLGLNDL--SGAIPKEIGN--------------- 196 (452)
Q Consensus 137 ~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~~~~~--------------- 196 (452)
+++ .+|..+.. +++|++|++++|.+... .+..+++| ++|++++|.+ ++..|..+..
T Consensus 133 l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 133 FDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred ccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 763 23345554 77777777777776532 33444444 7777777766 4444444333
Q ss_pred -----------CCCccEEEeeccc----------------------------ceec----CCcccCCCCCCCEEEccCCc
Q 043765 197 -----------FTSLQKISLIYNK----------------------------LHGE----IPLEVGNLRNQDTLWLGSNN 233 (452)
Q Consensus 197 -----------l~~L~~L~l~~n~----------------------------~~~~----~~~~~~~l~~L~~L~l~~~~ 233 (452)
+++|+.+++++|. +.+. .+..+ ...+|++|++++|.
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccE
Confidence 2233333333331 0000 00000 11256666666666
Q ss_pred ccccccccc-----cCC--------------------------CCccEEeccCCcCcccCChhhhcCCCCCcEEeccccc
Q 043765 234 LVGIVLSTI-----FNK--------------------------SAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINR 282 (452)
Q Consensus 234 ~~~~~~~~l-----~~~--------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 282 (452)
+.+..|..+ .++ .+|+.|++++|.+.... ....+++|++|++++|+
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSC
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCCc
Confidence 665444443 222 34666666666554211 11378899999999999
Q ss_pred eeecCCccccCCCCCcEEEeeCccccee--CCccccCchhHHHh-hcCCCCcccCCch-hhcchhccceeecccccCccc
Q 043765 283 FSGTIPSFITNASNLTILEMGLNSFSGF--IPNKIGNLRTLQTA-LSNNPLDGILPSS-IGNLSISMERLYIFNCSISGN 358 (452)
Q Consensus 283 l~~~~~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~~-~~~~~~~~~~p~~-~~~~~~~L~~L~L~~~~l~~~ 358 (452)
+++..|..+.++++|++|++++|.+.+. .|..+..++.|+.+ ++.|.+.+.+|.. +..+. +|+.|++++|++++.
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE-SILVLNLSSNMLTGS 443 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT-TCCEEECCSSCCCGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc-cCCEEECCCCCCCcc
Confidence 9988888899999999999999998863 34567788888776 7788888767765 44555 999999999999877
Q ss_pred CcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhh-hcCCCCCCEEeCcCCcccccC
Q 043765 359 IPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDD-LCRLHRLDTLILDGNEFSESI 431 (452)
Q Consensus 359 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~ 431 (452)
.|..+. ++|++|++++|+++. +|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+..
T Consensus 444 ~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp GGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred hhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 766554 799999999999995 5555559999999999999999 45655 899999999999999997643
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=310.35 Aligned_cols=321 Identities=19% Similarity=0.196 Sum_probs=279.9
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++.++++++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 68888888874 565553 589999999999998888899999999999999999998889999999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+.
T Consensus 92 l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred CC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 98 67776655599999999999999988888899999999999999999888888899999999999999999865556
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASN 296 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 296 (452)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++...+ ...+|+.|++++|.++...+..+..+++
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccc
Confidence 788999999999999999998888899999999999999988777777766 5669999999999999666568899999
Q ss_pred CcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccC
Q 043765 297 LTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGG 376 (452)
Q Consensus 297 L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~ 376 (452)
|++|++++|.+.+..+..+..++ +|+.|++++|++.+..|..|..+++|++|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELL------------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCT------------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccc------------------------cCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 99999999998876665554332 788999999999988888899999999999999
Q ss_pred CcCCcccchhccCCCccceeecccCccccc
Q 043765 377 NELTGPVLVTFDRLQNLQGLFLSSNKLAGS 406 (452)
Q Consensus 377 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 406 (452)
|++++..+..|..+++|+.|++++|++...
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999988888888899999999999988743
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-37 Score=301.22 Aligned_cols=322 Identities=18% Similarity=0.156 Sum_probs=277.8
Q ss_pred CCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEcc
Q 043765 79 LVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLN 158 (452)
Q Consensus 79 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 158 (452)
-+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..+.. +++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECC
Confidence 467888888887 5666553 68999999999999888889999999999999999998655666665 9999999999
Q ss_pred CccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccc
Q 043765 159 NNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIV 238 (452)
Q Consensus 159 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 238 (452)
+|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 99998666667899999999999999999888888999999999999999998888888999999999999999999888
Q ss_pred cccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCc
Q 043765 239 LSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNL 318 (452)
Q Consensus 239 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l 318 (452)
+..+.++++|+.|++++|.+.+ ++...+..+++|+.|++++|.+.+.++.......+|++|++++|.+.+..+..+
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--- 244 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV--- 244 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH---
T ss_pred hhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh---
Confidence 8889999999999999999884 444445588999999999988777666666666799999999998764332222
Q ss_pred hhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeec
Q 043765 319 RTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFL 398 (452)
Q Consensus 319 ~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 398 (452)
..+. +|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++
T Consensus 245 --------------------~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 245 --------------------RHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp --------------------TTCT-TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred --------------------cCcc-ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 3333 8999999999999888888999999999999999999988999999999999999
Q ss_pred ccCcccccChhhhcCCCCCCEEeCcCCcccc
Q 043765 399 SSNKLAGSIPDDLCRLHRLDTLILDGNEFSE 429 (452)
Q Consensus 399 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 429 (452)
++|++++..+..|..+++|+.|++++|++..
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 9999998777788999999999999999864
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7e-36 Score=293.73 Aligned_cols=340 Identities=26% Similarity=0.407 Sum_probs=273.2
Q ss_pred eeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 043765 56 FSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (452)
.+|+++++++.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|
T Consensus 49 ~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 49 TTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122 (466)
T ss_dssp CEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred cEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC
Confidence 389999999875 44 38889999999999999986543 9999999999999999986655 899999999999999
Q ss_pred CCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCC
Q 043765 136 RFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIP 215 (452)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 215 (452)
.++ .++. +.. +++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+. + .++.+++|++|++++|.+.+ +
T Consensus 123 ~l~-~~~~-~~~-l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~-~- 192 (466)
T 1o6v_A 123 QIT-DIDP-LKN-LTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSD-I- 192 (466)
T ss_dssp CCC-CCGG-GTT-CTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCC-C-
T ss_pred CCC-CChH-HcC-CCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCC-C-
Confidence 998 5554 444 9999999999999874 33 48899999999996 444433 2 38899999999999999874 3
Q ss_pred cccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCC
Q 043765 216 LEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNAS 295 (452)
Q Consensus 216 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 295 (452)
..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+ ++ . ...+++|+.|++++|.+++..+ +..++
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-T-LASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-G-GGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-h-hhcCCCCCEEECCCCccccchh--hhcCC
Confidence 458889999999999999988765 6778999999999999874 33 2 3478999999999999986654 88999
Q ss_pred CCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEc
Q 043765 296 NLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQL 374 (452)
Q Consensus 296 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l 374 (452)
+|++|++++|.+.+..+ +..++.|+.+ +..|.+.+..| +..++ +|+.|++++|++++..| +..+++|++|++
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 99999999999886554 6666766665 56666665433 55565 78888888888875544 567788888888
Q ss_pred cCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccc
Q 043765 375 GGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSE 429 (452)
Q Consensus 375 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 429 (452)
++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88888764 356778888888888888887665 7778888888888888765
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.3e-36 Score=305.04 Aligned_cols=388 Identities=20% Similarity=0.204 Sum_probs=281.9
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
..+.++.+++. +|..+. +++++|+|++|++++..+.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 67888888884 565443 489999999999998888899999999999999999998888899999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccc-cCCCCccCCCCccEEEeecccceecCC
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSG-AIPKEIGNFTSLQKISLIYNKLHGEIP 215 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~ 215 (452)
++ .+|...+.++++|++|++++|.+++..+..|+++++|++|++++|.+.. ..|..++.+++|++|++++|.+.+..+
T Consensus 112 l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 112 IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 98 7777766669999999999999997767789999999999999999975 457788999999999999999987766
Q ss_pred cccCCCCCC----CEEEccCCcccccccccc-------------------------------------------------
Q 043765 216 LEVGNLRNQ----DTLWLGSNNLVGIVLSTI------------------------------------------------- 242 (452)
Q Consensus 216 ~~~~~l~~L----~~L~l~~~~~~~~~~~~l------------------------------------------------- 242 (452)
..+..+.++ ..++++.|.+....+..+
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 666544332 244444444332221111
Q ss_pred ------------------------------------------------------cCCCCccEEeccCCcCcccCChh---
Q 043765 243 ------------------------------------------------------FNKSAVKEIDLFNNSLSGNLPSR--- 265 (452)
Q Consensus 243 ------------------------------------------------------~~~~~L~~L~l~~n~~~~~~~~~--- 265 (452)
.....++.|++.+|.+.......
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 350 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 350 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTT
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchh
Confidence 11112333333333221100000
Q ss_pred ---------------hhcCCCCCcEEeccccceee--cCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcC
Q 043765 266 ---------------TDLALPNIDYLGLAINRFSG--TIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSN 327 (452)
Q Consensus 266 ---------------~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~ 327 (452)
....+++|+.++++.|.+.. ..+..+..+.+|+.+++..+..... +..+..++.++.. +..
T Consensus 351 L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 351 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp CCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTT
T ss_pred hhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhh
Confidence 00023334444444443321 1222333444444444444443322 2334445555443 344
Q ss_pred CCCcccCCc-hhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcC-CcccchhccCCCccceeecccCcccc
Q 043765 328 NPLDGILPS-SIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNEL-TGPVLVTFDRLQNLQGLFLSSNKLAG 405 (452)
Q Consensus 328 ~~~~~~~p~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i-~~~~~~~~~~~~~L~~L~l~~n~i~~ 405 (452)
++.....+. .+..+. +++.+++++|.+.+..+..+..+++++.|++++|.+ .+..|..|..+++|++|++++|++++
T Consensus 430 ~~~~~~~~~~~~~~l~-~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp SEEESTTSSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred cccccccccccccccc-ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 444444443 344555 899999999999988888899999999999999975 44678889999999999999999999
Q ss_pred cChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCCceeccccC
Q 043765 406 SIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLNVAD 450 (452)
Q Consensus 406 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 450 (452)
..|..|.++++|+.|+|++|++++..|..+..+++|+.||++.+.
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 999999999999999999999988778899999999999998764
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-36 Score=280.78 Aligned_cols=296 Identities=28% Similarity=0.399 Sum_probs=214.9
Q ss_pred CCChhhHHHHHHHHHhCcCCCCCccCCCCCCCCceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCC--cCChhhhC
Q 043765 22 NNITTDQQVLLALKAHITYDPTNFLAQNWTSNTSFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSG--DIPSSIFT 99 (452)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~ 99 (452)
.|.+.|.+++++||+++ .+|. .+.. |....++ -.+...|..-..-....++++|++++|.+++ .+|..+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~-~~~~-~l~~-W~~~~~~----C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~ 74 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDL-GNPT-TLSS-WLPTTDC----CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN 74 (313)
T ss_dssp CSCHHHHHHHHHHHHHT-TCCG-GGTT-CCTTSCT----TTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGG
T ss_pred CCCHHHHHHHHHHHHhc-CCcc-cccC-CCCCCCC----CcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhC
Confidence 58889999999999999 4665 4555 8643321 0001222211111112467788888888777 67777888
Q ss_pred CCCCCEEeCCC-CcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCE
Q 043765 100 MHTLKFLYFSD-NQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQ 178 (452)
Q Consensus 100 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 178 (452)
+++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+..+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 88888888874 7777777777788888888888888887777777666 778888888888877777777778888888
Q ss_pred EEccCccccccCCCCccCCC-CccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCc
Q 043765 179 LNLGLNDLSGAIPKEIGNFT-SLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNS 257 (452)
Q Consensus 179 L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 257 (452)
|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..+. |++|++++|.+.+..+..+.++++|+.|++++|.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 88888887777777777776 788888888887777777777776 8888888888877777777788888888888887
Q ss_pred CcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCC
Q 043765 258 LSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNP 329 (452)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~ 329 (452)
+.+.++. +..+++|++|++++|.+++.+|.++..+++|++|++++|.+.+.+|.. ..+++|+.+ +..|+
T Consensus 233 l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 233 LAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred eeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 7655544 236778888888888888777777888888888888888887777765 566666654 55554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.5e-35 Score=288.81 Aligned_cols=317 Identities=26% Similarity=0.408 Sum_probs=269.0
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
+|++++|.+++..+ +..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|.
T Consensus 72 ~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 72 QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 145 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEE
T ss_pred EEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCc
Confidence 89999999987654 8999999999999999986544 9999999999999999986543 8999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
+. .++. +.. +++|++|+++ +.+.+. ..+.++++|++|++++|.+... ..+..+++|++|++++|.+.+..+
T Consensus 146 l~-~~~~-~~~-l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 146 IS-DISA-LSG-LTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp EC-CCGG-GTT-CTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cC-CChh-hcc-CCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-
Confidence 98 5553 444 9999999997 444433 2388999999999999998743 348889999999999999886544
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASN 296 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 296 (452)
++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 288 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTA 288 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred -ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--ccCCCc
Confidence 77899999999999999876 357889999999999999985443 4488999999999999996554 889999
Q ss_pred CcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEcc
Q 043765 297 LTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLG 375 (452)
Q Consensus 297 L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~ 375 (452)
|++|++++|.+.+..+ +..++.|+.+ +..|.+.+..| +..++ +|+.|++++|++++. ..+..+++|+.|+++
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT-TCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc-cCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 9999999999987654 6677777776 77888877665 56666 999999999999954 468899999999999
Q ss_pred CCcCCcccchhccCCCccceeecccCcccc
Q 043765 376 GNELTGPVLVTFDRLQNLQGLFLSSNKLAG 405 (452)
Q Consensus 376 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 405 (452)
+|++++..| +..+++|+.|++++|++++
T Consensus 362 ~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCccCccch--hhcCCCCCEEeccCCcccC
Confidence 999998776 7889999999999999986
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-35 Score=281.44 Aligned_cols=311 Identities=20% Similarity=0.235 Sum_probs=246.5
Q ss_pred CCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCE
Q 043765 75 NLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKA 154 (452)
Q Consensus 75 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 154 (452)
.++++++|+++++.++...+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+.. +++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC-CCCCCE
Confidence 4678899999999888655556788899999999999988777778889999999999999988444444444 889999
Q ss_pred EEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcc
Q 043765 155 LLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNL 234 (452)
Q Consensus 155 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 234 (452)
|++++|.+....+..|..+++|++|++++|.+.+..+..++.+++|++|++++|.+++. .+..+++|+++++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999988854445578889999999999998877777788889999999999988743 356678889999998888
Q ss_pred cccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCcc
Q 043765 235 VGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNK 314 (452)
Q Consensus 235 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 314 (452)
.+.. ..+.|+.|++++|.+.. ++.. ..++|+.|++++|.+++. .++..+++|++|++++|.+.+..|..
T Consensus 199 ~~~~-----~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 199 STLA-----IPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp SEEE-----CCSSCSEEECCSSCCCE-EECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cccC-----CCCcceEEECCCCeeee-cccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 7542 34578999999988873 3332 457899999999988854 46888999999999999887766655
Q ss_pred ccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccc
Q 043765 315 IGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQ 394 (452)
Q Consensus 315 l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 394 (452)
+.. ++ +|+.|++++|+++ .++..+..+++|++|++++|++.+ +|..+..+++|+
T Consensus 268 ~~~-----------------------l~-~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 321 (390)
T 3o6n_A 268 FVK-----------------------MQ-RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLE 321 (390)
T ss_dssp GTT-----------------------CS-SCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCS
T ss_pred ccc-----------------------cc-cCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCccee-cCccccccCcCC
Confidence 443 22 7889999999888 456666778899999999998885 555677788999
Q ss_pred eeecccCcccccChhhhcCCCCCCEEeCcCCcccc
Q 043765 395 GLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSE 429 (452)
Q Consensus 395 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 429 (452)
.|++++|++++. + +..+++|+.|++++|++..
T Consensus 322 ~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 322 NLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 999999998854 3 6778889999999998865
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.4e-34 Score=272.17 Aligned_cols=307 Identities=25% Similarity=0.383 Sum_probs=216.0
Q ss_pred CCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCC
Q 043765 73 LGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNL 152 (452)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 152 (452)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.++ .++ .+.. +++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~~-l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQN-LTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTT-CTTC
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHcC-CCcC
Confidence 3466788888888888763 33 37778888888888888875433 778888888888888877 454 3444 7888
Q ss_pred CEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCC
Q 043765 153 KALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSN 232 (452)
Q Consensus 153 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 232 (452)
++|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 8888888887743 33 7778888888888886553333 37778888888888887763322 677788888888888
Q ss_pred cccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCC
Q 043765 233 NLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIP 312 (452)
Q Consensus 233 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 312 (452)
.+.+..+ +..+++|+.+++++|.+.+..+ ...+++|++|++++|.+++..+ +..+++|++|++++|.+.+.
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence 7776654 6677788888888887763322 3367788888888887775433 77778888888887776532
Q ss_pred ccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCc
Q 043765 313 NKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQN 392 (452)
Q Consensus 313 ~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 392 (452)
.. +..++ +|+.|++++|++++. +.+..+++|++|++++|++++..+..+..+++
T Consensus 259 ~~-----------------------~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 259 NA-----------------------VKDLT-KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp GG-----------------------GTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred hh-----------------------HhcCC-CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 11 12222 777777777777743 34667777888888888777777777777778
Q ss_pred cceeecccCcccccChhhhcCCCCCCEEeCcCCccc
Q 043765 393 LQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFS 428 (452)
Q Consensus 393 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 428 (452)
|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888887776544 777777888888877764
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-34 Score=291.93 Aligned_cols=311 Identities=20% Similarity=0.243 Sum_probs=251.8
Q ss_pred CCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCE
Q 043765 75 NLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKA 154 (452)
Q Consensus 75 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 154 (452)
.+++++.+++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++ +|...+..+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCE
Confidence 46788999999999887666678889999999999999998888889999999999999999984 44444334899999
Q ss_pred EEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcc
Q 043765 155 LLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNL 234 (452)
Q Consensus 155 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 234 (452)
|++++|.+.+..+..|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+.+. .++.++.|+.+++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999998865556678999999999999999888888889999999999999988753 356678899999999888
Q ss_pred cccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCcc
Q 043765 235 VGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNK 314 (452)
Q Consensus 235 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 314 (452)
.+.. ....|+.|++++|.+.. ++.. ..++|+.|++++|.+++. .++..+++|+.|++++|.+.+..|..
T Consensus 205 ~~l~-----~~~~L~~L~ls~n~l~~-~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 205 STLA-----IPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp SEEE-----CCTTCSEEECCSSCCCE-EECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cccc-----CCchhheeeccCCcccc-cccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHH
Confidence 7542 34578999999998863 3322 346899999999999863 57888999999999999888776665
Q ss_pred ccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccc
Q 043765 315 IGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQ 394 (452)
Q Consensus 315 l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 394 (452)
+..+ + +|+.|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+
T Consensus 274 ~~~l-----------------------~-~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~ 327 (597)
T 3oja_B 274 FVKM-----------------------Q-RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLE 327 (597)
T ss_dssp GTTC-----------------------S-SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCS
T ss_pred hcCc-----------------------c-CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCC
Confidence 5433 2 78899999998884 56666778899999999998884 566677889999
Q ss_pred eeecccCcccccChhhhcCCCCCCEEeCcCCcccc
Q 043765 395 GLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSE 429 (452)
Q Consensus 395 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 429 (452)
.|++++|++.+. + +..+++|+.|++++|++.+
T Consensus 328 ~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 328 NLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 999999998854 2 6778889999999998865
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-34 Score=282.02 Aligned_cols=329 Identities=17% Similarity=0.195 Sum_probs=240.4
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
+|++++|++++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+++. + +.++++|++|++++|.
T Consensus 46 ~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 46 SLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp EEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSC
T ss_pred EEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCc
Confidence 799999999874 4 588899999999999998864 3 88899999999999998864 3 8889999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .+| +.. +++|++|++++|.+++. + ++.+++|++|++++|...+.+ .++.+++|++|++++|.+++ +|
T Consensus 118 l~-~l~--~~~-l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~- 186 (457)
T 3bz5_A 118 LT-KLD--VSQ-NPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD- 186 (457)
T ss_dssp CS-CCC--CTT-CTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC-
T ss_pred CC-eec--CCC-CCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec-
Confidence 98 455 444 88999999999998863 3 788899999999999655454 47788999999999999885 44
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASN 296 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 296 (452)
++.++.|++|++++|.+++. .+..+++|+.|++++|.+++ +| ...+++|+.|++++|.+++.. +..+++
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~ 255 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD---VSTLSK 255 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred -cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC---HHHCCC
Confidence 78889999999999999876 37788999999999999885 55 337889999999999998754 345666
Q ss_pred CcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcc--------cccCCCC
Q 043765 297 LTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQ--------VISNLTN 368 (452)
Q Consensus 297 L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~--------~~~~~~~ 368 (452)
|+.|+++.|.+... .+..|.+.+.+| +..+. +|+.|++++|...+.+|. .+.++++
T Consensus 256 L~~L~l~~n~L~~L-------------~l~~n~~~~~~~--~~~l~-~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 256 LTTLHCIQTDLLEI-------------DLTHNTQLIYFQ--AEGCR-KIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp CCEEECTTCCCSCC-------------CCTTCTTCCEEE--CTTCT-TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CCEEeccCCCCCEE-------------ECCCCccCCccc--ccccc-cCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 66666665544311 123333334443 12333 666666666655443332 1345566
Q ss_pred CCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhh-------------cCCCCCCEEeCcCCcccccCCccc
Q 043765 369 FTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDL-------------CRLHRLDTLILDGNEFSESIPTCL 435 (452)
Q Consensus 369 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-------------~~l~~L~~L~l~~n~~~~~~~~~~ 435 (452)
|++|++++|++++. .+..+++|+.|++++|++++. + .+ ..+..|..+++++|.++|.+|..+
T Consensus 320 L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l-~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 320 LVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF-S-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC-T-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred CCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc-c-ccccccccCCcEEecceeeecCccccccCcEEEEcChhH
Confidence 67777777777663 255667777777777766642 1 11 223567888999999999888755
Q ss_pred c
Q 043765 436 G 436 (452)
Q Consensus 436 ~ 436 (452)
.
T Consensus 395 ~ 395 (457)
T 3bz5_A 395 L 395 (457)
T ss_dssp B
T ss_pred h
Confidence 3
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4e-35 Score=286.03 Aligned_cols=300 Identities=23% Similarity=0.291 Sum_probs=153.9
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEE
Q 043765 101 HTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLN 180 (452)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 180 (452)
++|++|++++|.+++ +|.. ..+|++|++++|.++ .++.. .++|++|++++|.+++ +| .|.++++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 345555555555543 2321 245555555555554 22211 2455555555555553 44 355555555555
Q ss_pred ccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcc
Q 043765 181 LGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSG 260 (452)
Q Consensus 181 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 260 (452)
+++|++++ +|..+ ++|++|++++|.+.+ +| .++.+++|++|++++|.+++.+. . .++|+.|++++|.+.
T Consensus 160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~-~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD-L---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC-C---CTTCCEEECCSSCCS-
T ss_pred CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC-C---cCcccEEECcCCcCC-
Confidence 55555552 33322 355555555555553 33 35555555666665555554321 1 135556666665555
Q ss_pred cCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhh
Q 043765 261 NLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIG 339 (452)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~ 339 (452)
.+|. +..+++|++|++++|++++ +|.. +++|++|++++|.+.+ +|..+ +.|+.+ ++.|.+.+. |
T Consensus 229 ~lp~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~---~~L~~L~ls~N~l~~l-~---- 293 (454)
T 1jl5_A 229 ELPE--LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELP---QSLTFLDVSENIFSGL-S---- 293 (454)
T ss_dssp SCCC--CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSEE-S----
T ss_pred cccc--cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCccc---CcCCEEECcCCccCcc-c----
Confidence 4442 2255566666666665553 2221 2555666666665554 23222 222222 444444441 1
Q ss_pred cchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCCE
Q 043765 340 NLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDT 419 (452)
Q Consensus 340 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 419 (452)
..+.+|+.|++++|++++ ++. ..++|++|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+.
T Consensus 294 ~~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~ 361 (454)
T 1jl5_A 294 ELPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQ 361 (454)
T ss_dssp CCCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred CcCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccE
Confidence 011255666666665553 111 12578888888888776 3332 477888888888887 4554 4678888
Q ss_pred EeCcCCcccc--cCCccccCC-------------CCCCceecccc
Q 043765 420 LILDGNEFSE--SIPTCLGNL-------------TSLEGSLLNVA 449 (452)
Q Consensus 420 L~l~~n~~~~--~~~~~~~~~-------------~~L~~L~l~~~ 449 (452)
|++++|++.+ .+|..+..+ ++|++|+++.+
T Consensus 362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 8888888877 677777666 67888777754
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-34 Score=277.25 Aligned_cols=306 Identities=17% Similarity=0.177 Sum_probs=264.9
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++++++.++...+..+..+++|++|++++|.+++..+.+|..+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 128 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc
Confidence 79999999987666667899999999999999998778899999999999999999998888899999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .++.+++|+.|++++|.+.+
T Consensus 129 l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~---- 200 (390)
T 3o6n_A 129 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST---- 200 (390)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE----
T ss_pred cC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc----
Confidence 99 88887765599999999999999987788899999999999999999854 36778999999999998763
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASN 296 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 296 (452)
+...+.+++|++++|.+...... ..++|+.|++++|.+.+. .. ...+++|++|++++|.+++..|..+..+++
T Consensus 201 -~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 201 -LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp -EECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred -cCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HH-HcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 33456899999999999877543 347899999999999843 23 348999999999999999988999999999
Q ss_pred CcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccC
Q 043765 297 LTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGG 376 (452)
Q Consensus 297 L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~ 376 (452)
|++|++++|.+.+... .+ ..++ +|+.|++++|++. .+|..+..+++|++|++++
T Consensus 274 L~~L~L~~n~l~~~~~-~~-----------------------~~l~-~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 274 LERLYISNNRLVALNL-YG-----------------------QPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp CCEEECCSSCCCEEEC-SS-----------------------SCCT-TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCS
T ss_pred CCEEECCCCcCcccCc-cc-----------------------CCCC-CCCEEECCCCcce-ecCccccccCcCCEEECCC
Confidence 9999999999875422 11 1223 8999999999998 6777788899999999999
Q ss_pred CcCCcccchhccCCCccceeecccCccccc
Q 043765 377 NELTGPVLVTFDRLQNLQGLFLSSNKLAGS 406 (452)
Q Consensus 377 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 406 (452)
|+++... +..+++|+.|++++|++.+.
T Consensus 328 N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 328 NSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CccceeC---chhhccCCEEEcCCCCccch
Confidence 9998753 66789999999999999864
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1e-34 Score=283.41 Aligned_cols=312 Identities=15% Similarity=0.165 Sum_probs=262.1
Q ss_pred CCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhc
Q 043765 69 IPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNY 148 (452)
Q Consensus 69 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 148 (452)
.+..++++++|++|++++|.+++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+++ ++ +..
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~- 104 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTP- 104 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTT-
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCC-
Confidence 344577889999999999999964 5 699999999999999999964 3 8899999999999999984 55 444
Q ss_pred CCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEE
Q 043765 149 LPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLW 228 (452)
Q Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 228 (452)
+++|++|++++|.+++ ++ +..+++|++|++++|.+++. + ++.+++|++|++++|...+.+ .++.+++|++|+
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 9999999999999986 44 88999999999999999864 3 789999999999999655454 578899999999
Q ss_pred ccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccc
Q 043765 229 LGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 229 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
+++|.+++.. +..+++|+.|++++|.+++. + ...+++|+.|++++|++++ +| +..+++|++|++++|.+.
T Consensus 177 ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 177 CSFNKITELD---VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CCSSCCCCCC---CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred CCCCccceec---cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 9999999864 78899999999999999853 3 3478999999999999997 55 889999999999999998
Q ss_pred eeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccch---
Q 043765 309 GFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLV--- 385 (452)
Q Consensus 309 ~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~--- 385 (452)
+..+..+..++.+. +. . ..|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.
T Consensus 247 ~~~~~~l~~L~~L~--l~--------------~-n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 247 ELDVSTLSKLTTLH--CI--------------Q-TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp CCCCTTCTTCCEEE--CT--------------T-CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred CcCHHHCCCCCEEe--cc--------------C-CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCC
Confidence 87655444443331 10 1 178899999998887776 46889999999999987665554
Q ss_pred -----hccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccc
Q 043765 386 -----TFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSE 429 (452)
Q Consensus 386 -----~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 429 (452)
.+..+++|++|++++|++++. + +..+++|+.|++++|++.+
T Consensus 308 ~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 308 GITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred cceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 356678999999999999974 3 8999999999999999976
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-33 Score=265.73 Aligned_cols=306 Identities=21% Similarity=0.356 Sum_probs=259.6
Q ss_pred hhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCC
Q 043765 96 SIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQ 175 (452)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 175 (452)
.+..+++|++|+++++.+... + .+..+++|++|++++|.++ .++. +.. +++|++|++++|.+.. + +.+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~-l~~L~~L~L~~n~i~~-~-~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP-LSN-LVKLTNLYIGTNKITD-I-SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCC-C-GGGTTCTT
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh-hhc-CCcCCEEEccCCcccC-c-hHHcCCCc
Confidence 356789999999999999843 3 4889999999999999998 5665 444 9999999999999884 3 46899999
Q ss_pred CCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccC
Q 043765 176 LQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFN 255 (452)
Q Consensus 176 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 255 (452)
|++|++++|.+.+. +. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 99999999999844 43 889999999999999765444 458999999999999999987765 78999999999999
Q ss_pred CcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCC
Q 043765 256 NSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILP 335 (452)
Q Consensus 256 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p 335 (452)
|.+. .++. ...+++|+.+++++|.+++..+ +..+++|++|++++|.+.+..+ +
T Consensus 187 n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~-------------------- 239 (347)
T 4fmz_A 187 NQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L-------------------- 239 (347)
T ss_dssp SCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G--------------------
T ss_pred Cccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h--------------------
Confidence 9987 3443 4489999999999999986544 8899999999999998864432 2
Q ss_pred chhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCC
Q 043765 336 SSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLH 415 (452)
Q Consensus 336 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 415 (452)
..++ +|+.|++++|.+++ + +.+..+++|++|++++|++++. ..+..+++|+.|++++|++++..+..+..++
T Consensus 240 ---~~l~-~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 240 ---ANLS-QLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp ---TTCT-TCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred ---hcCC-CCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 2233 89999999999985 3 4588999999999999999975 4578899999999999999999999999999
Q ss_pred CCCEEeCcCCcccccCCccccCCCCCCceeccccC
Q 043765 416 RLDTLILDGNEFSESIPTCLGNLTSLEGSLLNVAD 450 (452)
Q Consensus 416 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 450 (452)
+|+.|++++|++++..| +..+++|++|+++.|.
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 99999999999987555 8899999999888653
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-33 Score=286.62 Aligned_cols=306 Identities=17% Similarity=0.184 Sum_probs=264.6
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++++++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 134 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC
Confidence 79999999988777778899999999999999998888899999999999999999999888899999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .+|..++..+++|++|++++|.+.+..|..|..+++|++|++++|.+++. .++.+++|+.|++++|.+.+
T Consensus 135 l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~---- 206 (597)
T 3oja_B 135 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST---- 206 (597)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE----
T ss_pred CC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc----
Confidence 99 77877655599999999999999988888999999999999999999854 36778999999999998763
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASN 296 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 296 (452)
+.....|+.|++++|.+....... .++|+.|++++|.+.+. ..+ ..+++|+.|++++|.+++..|..|..+++
T Consensus 207 -l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 207 -LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQR 279 (597)
T ss_dssp -EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred -ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhh-ccCCCCCEEECCCCccCCCCHHHhcCccC
Confidence 345578999999999998776543 36899999999999853 333 48999999999999999999999999999
Q ss_pred CcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccC
Q 043765 297 LTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGG 376 (452)
Q Consensus 297 L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~ 376 (452)
|+.|++++|.+.+. |..+. .++ +|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus 280 L~~L~Ls~N~l~~l-~~~~~-----------------------~l~-~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 280 LERLYISNNRLVAL-NLYGQ-----------------------PIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp CCEEECTTSCCCEE-ECSSS-----------------------CCT-TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCS
T ss_pred CCEEECCCCCCCCC-Ccccc-----------------------cCC-CCcEEECCCCCCC-ccCcccccCCCCCEEECCC
Confidence 99999999998754 22222 222 8999999999998 6777788899999999999
Q ss_pred CcCCcccchhccCCCccceeecccCccccc
Q 043765 377 NELTGPVLVTFDRLQNLQGLFLSSNKLAGS 406 (452)
Q Consensus 377 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 406 (452)
|.+++.. +..+++|+.|++++|++.+.
T Consensus 334 N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 334 NSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 9998653 56788999999999998764
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.7e-33 Score=269.93 Aligned_cols=328 Identities=27% Similarity=0.355 Sum_probs=243.1
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
++++++|++++ +|. -.++|++|++++|.+++ +|.. .++|++|++++|++.+. +.. .++|++|++++|.
T Consensus 75 ~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 75 ELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQ 142 (454)
T ss_dssp EEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSC
T ss_pred EEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCC
Confidence 79999999986 344 23789999999999996 5643 48999999999999853 221 2799999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .+| .+.. +++|++|++++|.+++ +|..+ .+|++|++++|.+.+ +| .++.+++|++|++++|.+.+ +|.
T Consensus 143 l~-~lp-~~~~-l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~ 212 (454)
T 1jl5_A 143 LE-KLP-ELQN-SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD 212 (454)
T ss_dssp CS-SCC-CCTT-CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC
T ss_pred CC-CCc-ccCC-CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC
Confidence 99 588 4555 9999999999999985 56543 599999999999985 56 58999999999999999884 454
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASN 296 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 296 (452)
. .++|++|++++|.+...+ .+..+++|+.|++++|.+.+ +|. ..++|+.|++++|++++ +|.. .++
T Consensus 213 ~---~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~ 278 (454)
T 1jl5_A 213 L---PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQS 278 (454)
T ss_dssp C---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred C---cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCc
Confidence 3 258999999999998554 48899999999999999983 553 35899999999999996 4443 489
Q ss_pred CcEEEeeCcccceeCCccccCchhHHHh-hcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEcc
Q 043765 297 LTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLG 375 (452)
Q Consensus 297 L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~ 375 (452)
|++|++++|.+.+.. ... +.|+.+ +..|.+.+ ++ ..+.+|+.|++++|++++ +|.. +++|++|+++
T Consensus 279 L~~L~ls~N~l~~l~-~~~---~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 279 LTFLDVSENIFSGLS-ELP---PNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp CCEEECCSSCCSEES-CCC---TTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred CCEEECcCCccCccc-CcC---CcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 999999999998732 211 233333 56666664 22 232389999999999995 5554 5899999999
Q ss_pred CCcCCcccchhccCCCccceeecccCcccc--cChhhhcCC-------------CCCCEEeCcCCcccc--cCCccccC
Q 043765 376 GNELTGPVLVTFDRLQNLQGLFLSSNKLAG--SIPDDLCRL-------------HRLDTLILDGNEFSE--SIPTCLGN 437 (452)
Q Consensus 376 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l-------------~~L~~L~l~~n~~~~--~~~~~~~~ 437 (452)
+|++++ +|. .+++|+.|++++|++++ .+|..+..+ ++|+.|++++|++.+ .+|..+..
T Consensus 346 ~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 346 FNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------
T ss_pred CCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhh
Confidence 999996 444 47899999999999998 788888777 899999999999987 67755443
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=8e-32 Score=252.87 Aligned_cols=288 Identities=18% Similarity=0.220 Sum_probs=149.5
Q ss_pred CCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEc
Q 043765 78 SLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLL 157 (452)
Q Consensus 78 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 157 (452)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 89 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------------------- 89 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-------------------
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-------------------
Confidence 4556666665555 3343332 45555555555555444444444444444444444444
Q ss_pred cCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccc-
Q 043765 158 NNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVG- 236 (452)
Q Consensus 158 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~- 236 (452)
+..|..|..+++|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 90 ------~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 90 ------KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp ------CBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred ------eeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc
Confidence 333444444444444444444443 2232222 345555555555443333344555555555555555532
Q ss_pred -cccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccc
Q 043765 237 -IVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKI 315 (452)
Q Consensus 237 -~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l 315 (452)
..+..+.++++|+.|++++|.+. .+|... .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred CcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 34445555666666666666655 344332 2567777777777766666667777777777777776655444332
Q ss_pred cCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccC------
Q 043765 316 GNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDR------ 389 (452)
Q Consensus 316 ~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------ 389 (452)
.. ++ +|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 237 ~~-----------------------l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~ 291 (330)
T 1xku_A 237 AN-----------------------TP-HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291 (330)
T ss_dssp GG-----------------------ST-TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred cC-----------------------CC-CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccc
Confidence 22 22 5666666666666 55666666666666666666666555444432
Q ss_pred CCccceeecccCcccc--cChhhhcCCCCCCEEeCcCC
Q 043765 390 LQNLQGLFLSSNKLAG--SIPDDLCRLHRLDTLILDGN 425 (452)
Q Consensus 390 ~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n 425 (452)
.+.++.|++++|++.. ..|..|..++.++.+++++|
T Consensus 292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2444555555554432 23344444455555555444
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-32 Score=256.31 Aligned_cols=249 Identities=24% Similarity=0.356 Sum_probs=181.9
Q ss_pred CCCCEEEccCccCCc--cCCccccCCCCCCEEEccC-ccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCE
Q 043765 150 PNLKALLLNNNMIHG--KIPSILSKCKQLQQLNLGL-NDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDT 226 (452)
Q Consensus 150 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 226 (452)
.++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 568888888888887 7788888888888888884 7777778888888888888888888888777888888888888
Q ss_pred EEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCC-CCcEEeccccceeecCCccccCCCCCcEEEeeCc
Q 043765 227 LWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALP-NIDYLGLAINRFSGTIPSFITNASNLTILEMGLN 305 (452)
Q Consensus 227 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n 305 (452)
|++++|.+.+..|..+.++++|++|++++|.+++.+|..+. .++ +|++|++++|++++..|..+..++ |++|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 88888888877777777777888888888777777776665 454 777777777777777777777665 777777777
Q ss_pred ccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccch
Q 043765 306 SFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLV 385 (452)
Q Consensus 306 ~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 385 (452)
.+.+..+..+..+ . +|+.|++++|++++..+. +..+++|++|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l-----------------------~-~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 208 MLEGDASVLFGSD-----------------------K-NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEECCGGGCCTT-----------------------S-CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred cccCcCCHHHhcC-----------------------C-CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 7665555444322 2 666777777777644444 55667777777777777666666
Q ss_pred hccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCc
Q 043765 386 TFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNE 426 (452)
Q Consensus 386 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 426 (452)
.+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 6666777777777777777666654 566667777777776
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.6e-32 Score=254.64 Aligned_cols=289 Identities=17% Similarity=0.192 Sum_probs=144.3
Q ss_pred CCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEc
Q 043765 78 SLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLL 157 (452)
Q Consensus 78 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 157 (452)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..+.. +++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEEC
Confidence 5666666666665 4444332 46666666666666555555555555555555555555333333333 555555555
Q ss_pred cCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccccc
Q 043765 158 NNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGI 237 (452)
Q Consensus 158 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 237 (452)
++|.+. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. .+.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~ 164 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SGF 164 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GGS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CCC
Confidence 555554 3333222 444455554444443333334444444444444444321 013
Q ss_pred ccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccC
Q 043765 238 VLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGN 317 (452)
Q Consensus 238 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 317 (452)
.+..+..+ +|+.|++++|.+. .+|... .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~- 238 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS- 238 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-
T ss_pred CcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-
Confidence 33334444 5555555555554 233322 24566666666666655555566666666666666655543332222
Q ss_pred chhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccC------CC
Q 043765 318 LRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDR------LQ 391 (452)
Q Consensus 318 l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------~~ 391 (452)
.++ +|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+
T Consensus 239 ----------------------~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 239 ----------------------FLP-TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp ----------------------GCT-TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred ----------------------CCC-CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 222 5556666666555 55555555666666666666665544444432 23
Q ss_pred ccceeecccCccc--ccChhhhcCCCCCCEEeCcCC
Q 043765 392 NLQGLFLSSNKLA--GSIPDDLCRLHRLDTLILDGN 425 (452)
Q Consensus 392 ~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l~~n 425 (452)
.|+.|++++|++. +..|..|..++.|+.+++++|
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 4455555555544 334444455555555555544
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.7e-31 Score=250.65 Aligned_cols=289 Identities=19% Similarity=0.235 Sum_probs=240.4
Q ss_pred CCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEe
Q 043765 126 SMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISL 205 (452)
Q Consensus 126 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 205 (452)
++++++++++.+. .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..++.+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5666667666666 666654 468999999999998777778999999999999999999888999999999999999
Q ss_pred ecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcc-cCChhhhcCCCCCcEEecccccee
Q 043765 206 IYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSG-NLPSRTDLALPNIDYLGLAINRFS 284 (452)
Q Consensus 206 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~ 284 (452)
++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|+.|++++|.+.. .+....+..+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999988 5666554 799999999999999988889999999999999999863 133334448999999999999998
Q ss_pred ecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCccccc
Q 043765 285 GTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVIS 364 (452)
Q Consensus 285 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 364 (452)
. +|..+. ++|++|++++|.+.+..+..+..+ . +|+.|++++|++++..+..+.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l-----------------------~-~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGL-----------------------N-NLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTC-----------------------T-TCCEEECCSSCCCEECTTTGG
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCC-----------------------C-CCCEEECCCCcCceeChhhcc
Confidence 5 444443 899999999999887666555433 3 899999999999988887899
Q ss_pred CCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcC------CCCCCEEeCcCCcccc--cCCcccc
Q 043765 365 NLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCR------LHRLDTLILDGNEFSE--SIPTCLG 436 (452)
Q Consensus 365 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------l~~L~~L~l~~n~~~~--~~~~~~~ 436 (452)
.+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|+. .+.++.+++++|++.. ..|..+.
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 9999999999999999 57778889999999999999999777666654 4789999999999864 3467888
Q ss_pred CCCCCCceecccc
Q 043765 437 NLTSLEGSLLNVA 449 (452)
Q Consensus 437 ~~~~L~~L~l~~~ 449 (452)
.+.+++.++++.+
T Consensus 317 ~~~~l~~l~L~~N 329 (330)
T 1xku_A 317 CVYVRAAVQLGNY 329 (330)
T ss_dssp TCCCGGGEEC---
T ss_pred cccceeEEEeccc
Confidence 8999999998865
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.5e-36 Score=297.05 Aligned_cols=354 Identities=18% Similarity=0.189 Sum_probs=268.5
Q ss_pred eEEeCCCCccccCCcC-CCCCCCCCEEeCCCCcCCC----cCChhhhCCCCCCEEeCCCCcCcccCCccc-cCCC----C
Q 043765 57 SLNISSFNLQGTIPPQ-LGNLSSLVTLDLSQNKLSG----DIPSSIFTMHTLKFLYFSDNQLSGSLSSFT-FNMS----S 126 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~-~~~l~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~----~ 126 (452)
+|++++++++...... +..+++|++|++++|++++ .++..+..+++|++|++++|.+.+..+..+ ..+. +
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 86 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCc
Confidence 7899999987654333 6778999999999999874 346778889999999999999876444333 3455 7
Q ss_pred CCEEECcCCCCcc----cCchHHhhcCCCCCEEEccCccCCccCCcc-----ccCCCCCCEEEccCccccccC----CCC
Q 043765 127 MLVSDLSTNRFSG----ELPETICNYLPNLKALLLNNNMIHGKIPSI-----LSKCKQLQQLNLGLNDLSGAI----PKE 193 (452)
Q Consensus 127 L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~~~~~~----~~~ 193 (452)
|++|++++|.++. .++..+.. +++|++|++++|.+....+.. +...++|++|++++|.++... +..
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRT-LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTS-CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHcc-CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 9999999999884 34555555 899999999999987443332 233568999999999987533 455
Q ss_pred ccCCCCccEEEeecccceecCCcccC-----CCCCCCEEEccCCccccc----ccccccCCCCccEEeccCCcCcccCC-
Q 043765 194 IGNFTSLQKISLIYNKLHGEIPLEVG-----NLRNQDTLWLGSNNLVGI----VLSTIFNKSAVKEIDLFNNSLSGNLP- 263 (452)
Q Consensus 194 ~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~- 263 (452)
+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. .+..+..+++|++|++++|.+.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 66789999999999988754333332 356899999999999874 35567788999999999998864322
Q ss_pred ---hhhhcCCCCCcEEeccccceeec----CCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCc
Q 043765 264 ---SRTDLALPNIDYLGLAINRFSGT----IPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPS 336 (452)
Q Consensus 264 ---~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~ 336 (452)
...+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+. .
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~------~------------- 306 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC------E------------- 306 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH------H-------------
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH------H-------------
Confidence 23333578999999999999864 566778899999999999987644322211 0
Q ss_pred hhhcchhccceeecccccCccc----CcccccCCCCCCEEEccCCcCCcccchhccC-----CCccceeecccCcccc--
Q 043765 337 SIGNLSISMERLYIFNCSISGN----IPQVISNLTNFTVLQLGGNELTGPVLVTFDR-----LQNLQGLFLSSNKLAG-- 405 (452)
Q Consensus 337 ~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-----~~~L~~L~l~~n~i~~-- 405 (452)
.+....++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. +++|+.|++++|++++
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 1111112899999999998865 4556677899999999999998765554432 6799999999999986
Q ss_pred --cChhhhcCCCCCCEEeCcCCccccc
Q 043765 406 --SIPDDLCRLHRLDTLILDGNEFSES 430 (452)
Q Consensus 406 --~~~~~~~~l~~L~~L~l~~n~~~~~ 430 (452)
.+|..+..+++|+.|++++|++++.
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 7788888899999999999999764
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.4e-32 Score=252.55 Aligned_cols=288 Identities=21% Similarity=0.227 Sum_probs=227.7
Q ss_pred CCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEe
Q 043765 126 SMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISL 205 (452)
Q Consensus 126 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 205 (452)
+++.++++++.+. .+|..+ .+++++|++++|.+.+..+..|.++++|++|++++|.+++..|..++.+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4566666666665 666554 357888888888877666677888888888888888887777777888888888888
Q ss_pred ecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcc-cCChhhhcCCCCCcEEecccccee
Q 043765 206 IYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSG-NLPSRTDLALPNIDYLGLAINRFS 284 (452)
Q Consensus 206 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~ 284 (452)
++|.+. .+|..+. ++|++|++++|.+.+..+..+.++++|+.|++++|.+.. ......+..+ +|+.|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 888877 5555544 789999999999998888888999999999999998863 1333333344 9999999999998
Q ss_pred ecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCccccc
Q 043765 285 GTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVIS 364 (452)
Q Consensus 285 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 364 (452)
+ +|..+. ++|++|++++|.+.+..+..+..+ . +|+.|++++|++.+..+..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l-----------------------~-~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRY-----------------------S-KLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTC-----------------------T-TCSCCBCCSSCCCCCCTTGGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCC-----------------------C-CCCEEECCCCcCCcCChhHhh
Confidence 5 444443 789999999998876655544433 3 899999999999987777899
Q ss_pred CCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcC------CCCCCEEeCcCCccc--ccCCcccc
Q 043765 365 NLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCR------LHRLDTLILDGNEFS--ESIPTCLG 436 (452)
Q Consensus 365 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------l~~L~~L~l~~n~~~--~~~~~~~~ 436 (452)
.+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|.. .+.|+.|++++|++. +..|..+.
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 9999999999999999 57777899999999999999999777776655 377999999999987 45677899
Q ss_pred CCCCCCceecccc
Q 043765 437 NLTSLEGSLLNVA 449 (452)
Q Consensus 437 ~~~~L~~L~l~~~ 449 (452)
.+++|+.++++.+
T Consensus 318 ~l~~L~~l~l~~n 330 (332)
T 2ft3_A 318 CVTDRLAIQFGNY 330 (332)
T ss_dssp TBCCSTTEEC---
T ss_pred ccchhhhhhcccc
Confidence 9999999998765
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6e-35 Score=287.14 Aligned_cols=356 Identities=19% Similarity=0.182 Sum_probs=271.9
Q ss_pred eEEeCCCCccc----cCCcCCCCCCCCCEEeCCCCcCCCcCChhhh-CCC----CCCEEeCCCCcCcc----cCCccccC
Q 043765 57 SLNISSFNLQG----TIPPQLGNLSSLVTLDLSQNKLSGDIPSSIF-TMH----TLKFLYFSDNQLSG----SLSSFTFN 123 (452)
Q Consensus 57 ~l~l~~~~~~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~l~----~L~~L~l~~n~l~~----~~~~~~~~ 123 (452)
+|++++|+++. .++..+..+++|++|++++|.+++..+..+. .++ +|++|++++|.++. .++..+..
T Consensus 32 ~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 111 (461)
T 1z7x_W 32 VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111 (461)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS
T ss_pred EEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHcc
Confidence 79999999885 3566788889999999999998765444443 355 79999999999984 56888999
Q ss_pred CCCCCEEECcCCCCcccCchHHhh----cCCCCCEEEccCccCCcc----CCccccCCCCCCEEEccCccccccCCCCcc
Q 043765 124 MSSMLVSDLSTNRFSGELPETICN----YLPNLKALLLNNNMIHGK----IPSILSKCKQLQQLNLGLNDLSGAIPKEIG 195 (452)
Q Consensus 124 l~~L~~L~l~~n~~~~~~~~~~~~----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 195 (452)
+++|++|++++|.+++..+..+.. ..++|++|++++|.++.. ++..+..+++|++|++++|.+....+..+.
T Consensus 112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 191 (461)
T 1z7x_W 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence 999999999999997554554443 245799999999998853 355677889999999999998754333332
Q ss_pred -----CCCCccEEEeecccceec----CCcccCCCCCCCEEEccCCcccccc-----cccccCCCCccEEeccCCcCccc
Q 043765 196 -----NFTSLQKISLIYNKLHGE----IPLEVGNLRNQDTLWLGSNNLVGIV-----LSTIFNKSAVKEIDLFNNSLSGN 261 (452)
Q Consensus 196 -----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~~ 261 (452)
..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++.
T Consensus 192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~ 271 (461)
T 1z7x_W 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271 (461)
T ss_dssp HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH
Confidence 356999999999998853 4667778899999999999987643 22334688999999999998743
Q ss_pred ----CChhhhcCCCCCcEEeccccceeecCCcccc-----CCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcc
Q 043765 262 ----LPSRTDLALPNIDYLGLAINRFSGTIPSFIT-----NASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDG 332 (452)
Q Consensus 262 ----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~ 332 (452)
++..+. .+++|++|++++|.++...+..+. ..++|++|++++|.+.+.....
T Consensus 272 ~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~------------------ 332 (461)
T 1z7x_W 272 GCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH------------------ 332 (461)
T ss_dssp HHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH------------------
T ss_pred HHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH------------------
Confidence 344433 689999999999999764433332 3479999999999876442211
Q ss_pred cCCchhhcchhccceeecccccCcccCcccccC-----CCCCCEEEccCCcCCc----ccchhccCCCccceeecccCcc
Q 043765 333 ILPSSIGNLSISMERLYIFNCSISGNIPQVISN-----LTNFTVLQLGGNELTG----PVLVTFDRLQNLQGLFLSSNKL 403 (452)
Q Consensus 333 ~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~-----~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~i 403 (452)
++..+..++ +|+.|++++|++++..+..+.. .++|++|++++|.+++ .++..+..+++|++|++++|++
T Consensus 333 -l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 333 -FSSVLAQNR-FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp -HHHHHHHCS-SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred -HHHHHhhCC-CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 122334444 8999999999998664444332 6799999999999996 6788888899999999999999
Q ss_pred cccChhhhc-----CCCCCCEEeCcCCcccccCCc
Q 043765 404 AGSIPDDLC-----RLHRLDTLILDGNEFSESIPT 433 (452)
Q Consensus 404 ~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~ 433 (452)
++.....+. ....|+.|++.++......++
T Consensus 411 ~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 411 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp CHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred CHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 865333322 245799999998887654433
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.1e-31 Score=245.51 Aligned_cols=278 Identities=19% Similarity=0.241 Sum_probs=232.9
Q ss_pred cCCChhhHHHHHHHHHhCcCCCCCccCCCCCCCCceeEEeCCCCcccc----CCcCC--CCCCCCCEEeCCCCcCCCcCC
Q 043765 21 SNNITTDQQVLLALKAHITYDPTNFLAQNWTSNTSFSLNISSFNLQGT----IPPQL--GNLSSLVTLDLSQNKLSGDIP 94 (452)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~l~l~~~~~~~~----~~~~~--~~l~~L~~L~ls~n~l~~~~~ 94 (452)
.+...++.+++.+||..+..+|.++... |...... .-.-+...|. .+..+ ...+++++|++++|.++ .+|
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~--~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSN--NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTT--CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhh-hcccccc--cccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence 3456678899999999998888888877 8511100 0011111111 11111 23578999999999998 778
Q ss_pred hhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccC--
Q 043765 95 SSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSK-- 172 (452)
Q Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-- 172 (452)
..+..+++|++|++++|.+. .+|..+.++++|++|++++|.++ .+|..+.. +++|++|++++|.+.+.+|..+..
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEEECCCCCCccccChhHhhcc
Confidence 88889999999999999998 88888999999999999999998 88988877 999999999998888788877654
Q ss_pred -------CCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCC
Q 043765 173 -------CKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNK 245 (452)
Q Consensus 173 -------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 245 (452)
+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|.+.+..|..+.++
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 999999999999998 78888999999999999999998 467789999999999999999999999999999
Q ss_pred CCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccc
Q 043765 246 SAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 246 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+.++++++.+++..+.+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999888888765 8999999999999999999999999999999999877554
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=242.82 Aligned_cols=273 Identities=20% Similarity=0.194 Sum_probs=220.9
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
..++++++++. +|..+. ++|++|++++|++++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 35 ~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 57889999885 565554 589999999999997777789999999999999999998888889999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCC-ccccCCCCCCEEEccCcc-ccccCCCCccCCCCccEEEeecccceecC
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIP-SILSKCKQLQQLNLGLND-LSGAIPKEIGNFTSLQKISLIYNKLHGEI 214 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 214 (452)
++ .+|...+..+++|++|++++|.+....+ ..+..+++|++|++++|. +....+..++.+++|++|++++|.+.+..
T Consensus 112 l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 98 6777755559999999999999985433 478899999999999994 66666778999999999999999999888
Q ss_pred CcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhh--hcCCCCCcEEeccccceee----cCC
Q 043765 215 PLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRT--DLALPNIDYLGLAINRFSG----TIP 288 (452)
Q Consensus 215 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~----~~~ 288 (452)
|..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+... ....+.++.++++.+.+.+ .+|
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 8999999999999999999987766666678999999999999885433322 1246678888888888775 366
Q ss_pred ccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcc
Q 043765 289 SFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISG 357 (452)
Q Consensus 289 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~ 357 (452)
.++..+++|++|++++|.+....+..+.. ++ +|+.|++++|++.+
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~-----------------------l~-~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLKSVPDGIFDR-----------------------LT-SLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCCCCCTTTTTT-----------------------CT-TCCEEECCSSCBCC
T ss_pred HHHhcccCCCEEECCCCCCCccCHHHHhc-----------------------CC-CCCEEEeeCCCccC
Confidence 77889999999999999887333222232 22 67777887777663
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.9e-29 Score=230.77 Aligned_cols=248 Identities=20% Similarity=0.218 Sum_probs=213.4
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCccc--CCccccCCCCCCEEECcC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGS--LSSFTFNMSSMLVSDLST 134 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~ 134 (452)
.+++++++++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 68999998874 555443 6899999999999965555689999999999999998733 356777899999999999
Q ss_pred CCCcccCchHHhhcCCCCCEEEccCccCCccCC-ccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeeccccee-
Q 043765 135 NRFSGELPETICNYLPNLKALLLNNNMIHGKIP-SILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHG- 212 (452)
Q Consensus 135 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~- 212 (452)
|.+. .+|..+.. +++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 88 n~i~-~l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 88 NGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSEE-EEEEEEET-CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred Cccc-cChhhcCC-CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 9998 67777666 9999999999999885544 578899999999999999988888889999999999999999876
Q ss_pred cCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCcccc
Q 043765 213 EIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFIT 292 (452)
Q Consensus 213 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 292 (452)
..|..+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+ ++...+..+++|+.|++++|.+++..+..+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 578889999999999999999999988899999999999999999984 4444445889999999999999998888888
Q ss_pred CCC-CCcEEEeeCccccee
Q 043765 293 NAS-NLTILEMGLNSFSGF 310 (452)
Q Consensus 293 ~~~-~L~~L~L~~n~l~~~ 310 (452)
.++ +|++|++++|.+.+.
T Consensus 245 ~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCTTCCEEECTTCCEECS
T ss_pred hhhccCCEEEccCCCeecc
Confidence 885 999999999998754
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=239.73 Aligned_cols=203 Identities=20% Similarity=0.200 Sum_probs=92.7
Q ss_pred CCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEE
Q 043765 100 MHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQL 179 (452)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 179 (452)
++.....+++++.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444455666666655 2333222 25555555555555 3333222225555555555555554444445555555555
Q ss_pred EccCccccccCCCCccCCCCccEEEeecccceecCCc--ccCCCCCCCEEEccCC-cccccccccccCCCCccEEeccCC
Q 043765 180 NLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL--EVGNLRNQDTLWLGSN-NLVGIVLSTIFNKSAVKEIDLFNN 256 (452)
Q Consensus 180 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n 256 (452)
++++|.+++..+..++.+++|++|++++|.+.+ +|. .+..+++|++|++++| .+....+..+.++++|++|++++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 555555543222234455555555555555442 222 3444555555555544 234444444444444444444444
Q ss_pred cCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccc
Q 043765 257 SLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 257 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
.+.+..+..+. .+++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 185 ~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 185 DLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp TCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CcCccCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 44433333222 4444444444444443222222333444444444444443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.4e-28 Score=239.13 Aligned_cols=246 Identities=20% Similarity=0.218 Sum_probs=216.6
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++.++.+++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 58 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 68889888874 565554 689999999999998889999999999999999999998888999999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCc-cccccCCCCccCCCCccEEEeecccceecCC
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLN-DLSGAIPKEIGNFTSLQKISLIYNKLHGEIP 215 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 215 (452)
++ .+|...+..+++|++|++++|.+....+..|.++++|++|++++| .+....+..|..+++|++|++++|.+.+ +|
T Consensus 135 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 212 (452)
T 3zyi_A 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP 212 (452)
T ss_dssp CS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC
T ss_pred CC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc
Confidence 98 677665556999999999999999777778999999999999995 4554445578999999999999999984 44
Q ss_pred cccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCC
Q 043765 216 LEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNAS 295 (452)
Q Consensus 216 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 295 (452)
.+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..+.. +..+++|+.|++++|++++..+..|..++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 5888999999999999999999999999999999999999998554544 44899999999999999988888899999
Q ss_pred CCcEEEeeCcccce
Q 043765 296 NLTILEMGLNSFSG 309 (452)
Q Consensus 296 ~L~~L~L~~n~l~~ 309 (452)
+|+.|++++|.+..
T Consensus 291 ~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 291 YLVELHLHHNPWNC 304 (452)
T ss_dssp TCCEEECCSSCEEC
T ss_pred CCCEEEccCCCcCC
Confidence 99999999998763
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=237.69 Aligned_cols=245 Identities=20% Similarity=0.235 Sum_probs=213.5
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++.++.+++. +|..+. ++++.|++++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 47 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 68888888874 565554 689999999999998888899999999999999999998888899999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCcc-ccccCCCCccCCCCccEEEeecccceecCC
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLND-LSGAIPKEIGNFTSLQKISLIYNKLHGEIP 215 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 215 (452)
++ .++...+..+++|++|++++|.+....+..|..+++|++|++++|. +....+..|..+++|++|++++|.++ .+|
T Consensus 124 l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred CC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 98 6776655559999999999999997777789999999999999954 45444557899999999999999988 555
Q ss_pred cccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCC
Q 043765 216 LEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNAS 295 (452)
Q Consensus 216 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 295 (452)
.+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+..+ ..+..+++|+.|++++|++++..+..|..++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 58889999999999999999999999999999999999999984444 4445899999999999999988888899999
Q ss_pred CCcEEEeeCcccc
Q 043765 296 NLTILEMGLNSFS 308 (452)
Q Consensus 296 ~L~~L~L~~n~l~ 308 (452)
+|+.|++++|.+.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 9999999999875
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.4e-29 Score=232.38 Aligned_cols=282 Identities=18% Similarity=0.200 Sum_probs=142.6
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCcc--CCccccCCCCCCEEEc
Q 043765 104 KFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGK--IPSILSKCKQLQQLNL 181 (452)
Q Consensus 104 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l 181 (452)
+.++++++.++ .+|..+. +++++|++++|.++ .+|..++..+++|++|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 35566655555 2232221 34555555555554 44444333355555555555554421 1233334444444444
Q ss_pred cCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccccccc-ccccCCCCccEEeccCCcCcc
Q 043765 182 GLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVL-STIFNKSAVKEIDLFNNSLSG 260 (452)
Q Consensus 182 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~ 260 (452)
++|.+ . .++..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+
T Consensus 86 s~n~i------------------------~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 86 SFNGV------------------------I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp CSCSE------------------------E-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CCCcc------------------------c-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc
Confidence 44444 4 233334444555555555554444433 344455555555555555543
Q ss_pred cCChhhhcCCCCCcEEeccccceee-cCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhh
Q 043765 261 NLPSRTDLALPNIDYLGLAINRFSG-TIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIG 339 (452)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~ 339 (452)
..+..+ ..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+..+..+..+
T Consensus 141 ~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--------------------- 198 (306)
T 2z66_A 141 AFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL--------------------- 198 (306)
T ss_dssp CSTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC---------------------
T ss_pred cchhhc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC---------------------
Confidence 333222 245555555555555554 345556666666666666666554444333322
Q ss_pred cchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCC-ccceeecccCcccccCh--hhhcCCCC
Q 043765 340 NLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQ-NLQGLFLSSNKLAGSIP--DDLCRLHR 416 (452)
Q Consensus 340 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~--~~~~~l~~ 416 (452)
+ +|+.|++++|++++..+..+..+++|++|++++|++++..+..+..++ +|+.|++++|++.+.-+ .....+..
T Consensus 199 --~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 199 --S-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp --T-TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred --C-CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 1 566666666666655555566666677777777766666666666663 67777777776654321 11122223
Q ss_pred CCEEeCcCCcccccCCccccCCC
Q 043765 417 LDTLILDGNEFSESIPTCLGNLT 439 (452)
Q Consensus 417 L~~L~l~~n~~~~~~~~~~~~~~ 439 (452)
.+.+.+..+.+....|+.+.+.+
T Consensus 276 ~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 276 QRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp TGGGBSCGGGCBEEESGGGTTCB
T ss_pred hhhhhccccccccCCchhhCCce
Confidence 34445555555555666555543
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.6e-28 Score=225.38 Aligned_cols=223 Identities=22% Similarity=0.214 Sum_probs=117.4
Q ss_pred EEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecc
Q 043765 129 VSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYN 208 (452)
Q Consensus 129 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 208 (452)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 3444444444 444433 345666666666665544455666666666666666665555555666666666666666
Q ss_pred c-ceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecC
Q 043765 209 K-LHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTI 287 (452)
Q Consensus 209 ~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 287 (452)
. +....+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+. .++...+..+++|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence 4 44333455555566666666666555555555555555555555555554 222222224444555555555444443
Q ss_pred CccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCC
Q 043765 288 PSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLT 367 (452)
Q Consensus 288 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 367 (452)
+.++..+++|++|++++| ++++..|..+..++
T Consensus 170 ~~~~~~l~~L~~L~l~~n------------------------------------------------~l~~~~~~~~~~l~ 201 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQN------------------------------------------------RVAHVHPHAFRDLG 201 (285)
T ss_dssp TTTTTTCTTCCEEECCSS------------------------------------------------CCCEECTTTTTTCT
T ss_pred HHHhcCccccCEEECCCC------------------------------------------------cccccCHhHccCcc
Confidence 334444444444444444 44444444444555
Q ss_pred CCCEEEccCCcCCcccchhccCCCccceeecccCccc
Q 043765 368 NFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLA 404 (452)
Q Consensus 368 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 404 (452)
+|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 202 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 5555555555555544444555555555555555554
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.6e-28 Score=222.34 Aligned_cols=224 Identities=21% Similarity=0.243 Sum_probs=174.7
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+++++++++. +|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 68888888874 45433 4689999999999987777788999999999999999988778888889999999999987
Q ss_pred -CcccC-chHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecC
Q 043765 137 -FSGEL-PETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEI 214 (452)
Q Consensus 137 -~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 214 (452)
+. .+ |..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..
T Consensus 92 ~l~-~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 92 QLR-SVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TCC-CCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred Ccc-ccCHHHhcC-CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 66 55 444444 888888888888888776777888888888888888888666666788888888888888887655
Q ss_pred CcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeec
Q 043765 215 PLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGT 286 (452)
Q Consensus 215 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 286 (452)
+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+. .++...+..+++|+.|++++|.+.+.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCccCC
Confidence 556777888888888888888777777777777888888777776 34444444677777777777776643
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.4e-27 Score=233.76 Aligned_cols=248 Identities=19% Similarity=0.130 Sum_probs=174.8
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEc
Q 043765 102 TLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNL 181 (452)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 181 (452)
..+.++.++..++ .+|..+. +++++|++++|.+++..+..+.. +++|++|++++|.+.+..+..|.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3567888887777 3444333 57788888888887444444544 788888888888887766677888888888888
Q ss_pred cCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccC-CcccccccccccCCCCccEEeccCCcCcc
Q 043765 182 GLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGS-NNLVGIVLSTIFNKSAVKEIDLFNNSLSG 260 (452)
Q Consensus 182 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 260 (452)
++|.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++ +.+....+..+.++++|+.|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-
Confidence 88887766666677788888888888887755556677778888888877 4455555556777777888888777776
Q ss_pred cCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhc
Q 043765 261 NLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGN 340 (452)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~ 340 (452)
.++. ...+++|+.|++++|.+++..|..|.++++|+.|++++|.+.+..+..+..+
T Consensus 210 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---------------------- 265 (452)
T 3zyi_A 210 DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL---------------------- 265 (452)
T ss_dssp SCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC----------------------
T ss_pred cccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC----------------------
Confidence 3442 2266777777777777777777777777777777777777766555444332
Q ss_pred chhccceeecccccCcccCcccccCCCCCCEEEccCCcCC
Q 043765 341 LSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELT 380 (452)
Q Consensus 341 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~ 380 (452)
+ +|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus 266 -~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 266 -A-SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -T-TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred -C-CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 2 6777777777777555566667777777777777664
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.3e-31 Score=266.68 Aligned_cols=351 Identities=14% Similarity=0.105 Sum_probs=157.3
Q ss_pred CCCCCCEEeCCCCcCCCcCChhhhCC-C-CCCEEeCCCCc-Ccc-cCCccccCCCCCCEEECcCCCCccc----CchHHh
Q 043765 75 NLSSLVTLDLSQNKLSGDIPSSIFTM-H-TLKFLYFSDNQ-LSG-SLSSFTFNMSSMLVSDLSTNRFSGE----LPETIC 146 (452)
Q Consensus 75 ~l~~L~~L~ls~n~l~~~~~~~~~~l-~-~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~ 146 (452)
.+++|++|++++|.+++..+..+... + +|++|++++|. +.. .++....++++|++|++++|.+++. ++. +.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HH
Confidence 46667777777766654444444432 2 36666666654 111 1222233566666666666665433 222 22
Q ss_pred hcCCCCCEEEccCccCC----ccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccce-----------
Q 043765 147 NYLPNLKALLLNNNMIH----GKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLH----------- 211 (452)
Q Consensus 147 ~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~----------- 211 (452)
..+++|++|++++|.+. ..++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 22666666666666654 1223334456666666666666552 3444555555555555432111
Q ss_pred ---------------ecCCcccCCCCCCCEEEccCCccccccc-ccccCCCCccEEeccCCcCcccCChhhhcCCCCCcE
Q 043765 212 ---------------GEIPLEVGNLRNQDTLWLGSNNLVGIVL-STIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDY 275 (452)
Q Consensus 212 ---------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 275 (452)
+.+|..+..+++|++|++++|.+.+... ..+..+++|+.|+++ +.+.+.........+++|++
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence 1233334444455555555544432221 223444555555554 22221111222224455555
Q ss_pred Eeccc-----------cceeec-CCccccCCCCCcEEEeeCcccceeCCccccC-chhHHHh-hc----CCCCccc----
Q 043765 276 LGLAI-----------NRFSGT-IPSFITNASNLTILEMGLNSFSGFIPNKIGN-LRTLQTA-LS----NNPLDGI---- 333 (452)
Q Consensus 276 L~l~~-----------n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~~-~~----~~~~~~~---- 333 (452)
|++++ +.++.. .+.....+++|++|+++.+.+++..+..+.. ++.|+.+ +. .+.+.+.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 55551 333321 1111233555555555544444332222211 2222222 11 2222221
Q ss_pred -CCchhhcchhccceeeccccc--CcccCcccc-cCCCCCCEEEccCCcCCc-ccchhccCCCccceeecccCccccc-C
Q 043765 334 -LPSSIGNLSISMERLYIFNCS--ISGNIPQVI-SNLTNFTVLQLGGNELTG-PVLVTFDRLQNLQGLFLSSNKLAGS-I 407 (452)
Q Consensus 334 -~p~~~~~~~~~L~~L~L~~~~--l~~~~~~~~-~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~~~-~ 407 (452)
++..+..++ +|+.|++++|. +++..+..+ ..+++|++|++++|++++ ..+..+..+++|+.|++++|++++. +
T Consensus 427 ~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 427 GVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 222233343 55555554332 333222222 234555555555555554 2233334555555666655555433 2
Q ss_pred hhhhcCCCCCCEEeCcCCcccc
Q 043765 408 PDDLCRLHRLDTLILDGNEFSE 429 (452)
Q Consensus 408 ~~~~~~l~~L~~L~l~~n~~~~ 429 (452)
+.....+++|+.|++++|+++.
T Consensus 506 ~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHhcCccCeeECcCCcCCH
Confidence 2233445555566666555544
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=232.49 Aligned_cols=248 Identities=17% Similarity=0.144 Sum_probs=184.8
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEc
Q 043765 102 TLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNL 181 (452)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 181 (452)
..+.++.++..++ .+|..+. .++++|++++|.+.+..+..+.. +++|++|++++|.+....+..|.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSS-CSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhC-CCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 3567888888887 4554443 67888888888888444444444 888888888888888776778888888888888
Q ss_pred cCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccC-CcccccccccccCCCCccEEeccCCcCcc
Q 043765 182 GLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGS-NNLVGIVLSTIFNKSAVKEIDLFNNSLSG 260 (452)
Q Consensus 182 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 260 (452)
++|.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++ +.+....+..+.++++|+.|++++|.++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 88888866666788888888888888888766666788888888888887 4455555567778888888888888876
Q ss_pred cCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhc
Q 043765 261 NLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGN 340 (452)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~ 340 (452)
.+|. ...+++|+.|++++|.+++..+..|.++++|++|++++|.+.+..+..+..++
T Consensus 199 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--------------------- 255 (440)
T 3zyj_A 199 EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ--------------------- 255 (440)
T ss_dssp SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT---------------------
T ss_pred cccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC---------------------
Confidence 5553 23677888888888888877777788888888888888877766555444332
Q ss_pred chhccceeecccccCcccCcccccCCCCCCEEEccCCcCC
Q 043765 341 LSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELT 380 (452)
Q Consensus 341 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~ 380 (452)
+|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus 256 ---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 256 ---SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ---TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ---CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 6777888888877666666777778888888877764
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.1e-28 Score=226.14 Aligned_cols=223 Identities=21% Similarity=0.238 Sum_probs=206.0
Q ss_pred eeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 043765 56 FSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (452)
..|++++|+++ .+|+.+.++++|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|
T Consensus 84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 38999999998 67888989999999999999999 88999999999999999999999 77889999999999999999
Q ss_pred CCcccCchHHh--------hcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeec
Q 043765 136 RFSGELPETIC--------NYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIY 207 (452)
Q Consensus 136 ~~~~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 207 (452)
.+.+.+|..+. ..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTT
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcC
Confidence 88888888763 24899999999999998 78888999999999999999998 5677799999999999999
Q ss_pred ccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEecccccee
Q 043765 208 NKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFS 284 (452)
Q Consensus 208 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 284 (452)
|.+.+.+|..++.+++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+. .+++++.+++..+.+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECCGGGSC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCCHHHHH
Confidence 999989999999999999999999999999999999999999999999999999998887 9999999998876554
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=3.1e-26 Score=230.08 Aligned_cols=268 Identities=22% Similarity=0.296 Sum_probs=200.2
Q ss_pred CCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEE
Q 043765 77 SSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALL 156 (452)
Q Consensus 77 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 156 (452)
.++++|++++|.++ .+|..+. ++|++|++++|.+++ +|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 36899999999998 6676665 799999999999984 444 5789999999999988 6776 378999999
Q ss_pred ccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccc
Q 043765 157 LNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVG 236 (452)
Q Consensus 157 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 236 (452)
+++|.+++ +|. .+++|+.|++++|.++. +|.. +++|++|++++|.+.+ +|. .+.+|+.|++++|.+++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 99999884 444 56889999999999874 5543 4788999999988873 443 34678888888888887
Q ss_pred cccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCcccc
Q 043765 237 IVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIG 316 (452)
Q Consensus 237 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 316 (452)
+. ..+++|+.|++++|.+. .+|. ..++|+.|++++|.++. +|. .+++|++|++++|.+.+. |..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p~~-- 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-PVL-- 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-CCC--
T ss_pred Cc----ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-CCC--
Confidence 54 34677888888888877 3443 34678888888888873 333 247788888888877642 211
Q ss_pred CchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCcccee
Q 043765 317 NLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGL 396 (452)
Q Consensus 317 ~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 396 (452)
+ ++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|
T Consensus 240 ------------------------l-~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 240 ------------------------P-SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp ------------------------C-TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred ------------------------C-CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 1 17788888888877 4554 4677888888888887 456677788888888
Q ss_pred ecccCcccccChhhhcCC
Q 043765 397 FLSSNKLAGSIPDDLCRL 414 (452)
Q Consensus 397 ~l~~n~i~~~~~~~~~~l 414 (452)
++++|++++..|..+..+
T Consensus 290 ~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 290 NLEGNPLSERTLQALREI 307 (622)
T ss_dssp ECCSCCCCHHHHHHHHHH
T ss_pred EecCCCCCCcCHHHHHhc
Confidence 888888887777666543
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=9.5e-30 Score=258.03 Aligned_cols=366 Identities=14% Similarity=0.133 Sum_probs=232.9
Q ss_pred eEEeCCCCccccCCcCCCC-CCC-CCEEeCCCCc-CCC-cCChhhhCCCCCCEEeCCCCcCccc----CCccccCCCCCC
Q 043765 57 SLNISSFNLQGTIPPQLGN-LSS-LVTLDLSQNK-LSG-DIPSSIFTMHTLKFLYFSDNQLSGS----LSSFTFNMSSML 128 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~-l~~-L~~L~ls~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~ 128 (452)
+|+|++|.+++..+..+.. ++. |++|++++|. ++. .++.....+++|++|++++|.+.+. ++.....+++|+
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~ 195 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc
Confidence 7888888776544443433 223 6666666654 111 1112223556666666666655433 222334556666
Q ss_pred EEECcCCCCcc----cCchHHhhcCCCCCEEEccCccCCc--------------------------cCCccccCCCCCCE
Q 043765 129 VSDLSTNRFSG----ELPETICNYLPNLKALLLNNNMIHG--------------------------KIPSILSKCKQLQQ 178 (452)
Q Consensus 129 ~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------~~~~~~~~l~~L~~ 178 (452)
+|++++|.+++ .++..+.. +++|++|++++|.+.+ ..+..+..+++|+.
T Consensus 196 ~L~L~~n~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~ 274 (592)
T 3ogk_B 196 VLNFYMTEFAKISPKDLETIARN-CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274 (592)
T ss_dssp EEECTTCCCSSCCHHHHHHHHHH-CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCE
T ss_pred EEEeeccCCCccCHHHHHHHHhh-CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccc
Confidence 66666665541 22222222 5566666666555432 12233445556666
Q ss_pred EEccCccccccCCCCccCCCCccEEEeecccceecCC-cccCCCCCCCEEEccCCccc-ccccccccCCCCccEEeccC-
Q 043765 179 LNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIP-LEVGNLRNQDTLWLGSNNLV-GIVLSTIFNKSAVKEIDLFN- 255 (452)
Q Consensus 179 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~- 255 (452)
+++.++.. ..+|..+..+++|++|++++|.+.+... ..+..+++|++|+++ +.+. ...+.....+++|++|++++
T Consensus 275 L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 275 LGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp EEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecC
Confidence 66655432 2556667788999999999998764332 346889999999999 4444 33334446788999999993
Q ss_pred ----------CcCcccCChhhhcCCCCCcEEeccccceeecCCccccC-CCCCcEEEee----Cccccee-----CCccc
Q 043765 256 ----------NSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITN-ASNLTILEMG----LNSFSGF-----IPNKI 315 (452)
Q Consensus 256 ----------n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~~~L~~L~L~----~n~l~~~-----~~~~l 315 (452)
+.+++.........+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 45553333333447899999999999998766666655 9999999997 5566543 22223
Q ss_pred cCchhHHHh-hc--CCCCcccCCchhhcchhccceeecccccCccc-CcccccCCCCCCEEEccCCcCCcc-cchhccCC
Q 043765 316 GNLRTLQTA-LS--NNPLDGILPSSIGNLSISMERLYIFNCSISGN-IPQVISNLTNFTVLQLGGNELTGP-VLVTFDRL 390 (452)
Q Consensus 316 ~~l~~L~~~-~~--~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~ 390 (452)
.+++.|+.+ +. .+.+.+..+..+....++|+.|++++|++++. ++..+.++++|++|++++|.+++. ++.....+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 445555554 32 22355555555555333899999999999863 455567899999999999998764 34445679
Q ss_pred CccceeecccCcccccChhhh-cCCCCCCEEeCcCC
Q 043765 391 QNLQGLFLSSNKLAGSIPDDL-CRLHRLDTLILDGN 425 (452)
Q Consensus 391 ~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~n 425 (452)
++|++|++++|++++.....+ ..+|.+....+..+
T Consensus 513 ~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 999999999999987644444 46788877777665
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=4.5e-28 Score=225.76 Aligned_cols=220 Identities=17% Similarity=0.175 Sum_probs=134.5
Q ss_pred CCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEE
Q 043765 149 LPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLW 228 (452)
Q Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 228 (452)
+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|++|++++|.+.+..+. .+++|++|+
T Consensus 57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~ 126 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIY 126 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEE
T ss_pred CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEE
Confidence 4455555555554443222 445555555555555544211 225556666666655533222 245566777
Q ss_pred ccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccc
Q 043765 229 LGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 229 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
+++|.+++..+..+..+++|+.|++++|.+.+..+......+++|++|++++|.+++.. ....+++|++|++++|.+.
T Consensus 127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC
T ss_pred CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCC
Confidence 77777766666666667777777777777765444444445677777777777777542 2334777888888877776
Q ss_pred eeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCC-cccchhc
Q 043765 309 GFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELT-GPVLVTF 387 (452)
Q Consensus 309 ~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~ 387 (452)
+..+. + ..++ +|+.|++++|+++ .+|..+..+++|+.|++++|++. +..+..+
T Consensus 205 ~l~~~-~-----------------------~~l~-~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 205 FMGPE-F-----------------------QSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EECGG-G-----------------------GGGT-TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cchhh-h-----------------------cccC-cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 43322 2 2222 7778888888777 45666777788888888888887 5667777
Q ss_pred cCCCccceeecccC-ccccc
Q 043765 388 DRLQNLQGLFLSSN-KLAGS 406 (452)
Q Consensus 388 ~~~~~L~~L~l~~n-~i~~~ 406 (452)
..++.|+.++++++ .+.+.
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSS
T ss_pred hccccceEEECCCchhccCC
Confidence 77788888877744 34433
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=8.1e-26 Score=227.04 Aligned_cols=265 Identities=24% Similarity=0.350 Sum_probs=220.3
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.|++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|++++|.
T Consensus 44 ~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 44 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp EEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCC
T ss_pred EEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCc
Confidence 7999999998 5677665 89999999999998 4555 57999999999999984 444 78999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .+|. .+++|++|++++|.++. +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|
T Consensus 113 l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~- 177 (622)
T 3g06_A 113 LT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP- 177 (622)
T ss_dssp CC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC-
T ss_pred CC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc-
Confidence 98 6776 27899999999999984 5653 4899999999999984 454 34789999999999984 55
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASN 296 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 296 (452)
..+++|+.|++++|.++++.. ..++|+.|++++|.+. .++. .+++|+.|++++|.+++ +| ..+++
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred --ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc-CC---CCCCc
Confidence 457899999999999987543 2478999999999987 5553 45899999999999996 44 46789
Q ss_pred CcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccC
Q 043765 297 LTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGG 376 (452)
Q Consensus 297 L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~ 376 (452)
|+.|++++|.+.+. |.. + .+|+.|++++|+++ .+|..+..+++|+.|++++
T Consensus 243 L~~L~Ls~N~L~~l-p~~--------------------------~-~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 243 LKELMVSGNRLTSL-PML--------------------------P-SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSCC-CCC--------------------------C-TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CcEEECCCCCCCcC-Ccc--------------------------c-ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 99999999988732 221 1 28999999999999 7888899999999999999
Q ss_pred CcCCcccchhccCCC
Q 043765 377 NELTGPVLVTFDRLQ 391 (452)
Q Consensus 377 n~i~~~~~~~~~~~~ 391 (452)
|++.+..+..+..++
T Consensus 294 N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 294 NPLSERTLQALREIT 308 (622)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHhcc
Confidence 999998888766544
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-27 Score=222.52 Aligned_cols=250 Identities=20% Similarity=0.205 Sum_probs=208.8
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
..+++.+++.......+..+++|++|++++|++++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 45667777766555566778899999999999998888899999999999999999986654 8999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .++ . .++|++|++++|.+.+..+. .+++|++|++++|.+++..+..++.+++|++|++++|.+.+..+.
T Consensus 92 l~-~l~----~-~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 92 VQ-ELL----V-GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EE-EEE----E-CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cc-ccc----C-CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 98 444 2 58999999999999865444 468899999999999987788899999999999999999876666
Q ss_pred cc-CCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCC
Q 043765 217 EV-GNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNAS 295 (452)
Q Consensus 217 ~~-~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 295 (452)
.+ ..+++|++|++++|.+++... ...+++|+.|++++|.+. .++.... .+++|+.|++++|.++. +|..+..++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~~-l~~~~~~l~ 237 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQ 237 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred HHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCcccc-hhhHhhcCC
Confidence 66 478999999999999998743 345899999999999998 4555544 88999999999999994 567789999
Q ss_pred CCcEEEeeCcccc-eeCCccccCchhHH
Q 043765 296 NLTILEMGLNSFS-GFIPNKIGNLRTLQ 322 (452)
Q Consensus 296 ~L~~L~L~~n~l~-~~~~~~l~~l~~L~ 322 (452)
+|+.|++++|.+. +..+..+..++.++
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred CCCEEEccCCCccCcCHHHHHhccccce
Confidence 9999999999987 44555555554443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.2e-28 Score=226.22 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=95.6
Q ss_pred CCCCCEEEccCccCCccCCccc--cCCCCCCEEEccCccccccCCCCccCC-----CCccEEEeecccceecCCcccCCC
Q 043765 149 LPNLKALLLNNNMIHGKIPSIL--SKCKQLQQLNLGLNDLSGAIPKEIGNF-----TSLQKISLIYNKLHGEIPLEVGNL 221 (452)
Q Consensus 149 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l 221 (452)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|.+.+..+..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6677777777777766666654 6677777777777777654 5555555 677777777777765555666677
Q ss_pred CCCCEEEccCCccccc--ccccc--cCCCCccEEeccCCcCcc--cCChhhhcCCCCCcEEeccccceeecCC-ccccCC
Q 043765 222 RNQDTLWLGSNNLVGI--VLSTI--FNKSAVKEIDLFNNSLSG--NLPSRTDLALPNIDYLGLAINRFSGTIP-SFITNA 294 (452)
Q Consensus 222 ~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~ 294 (452)
++|++|++++|.+.+. .+..+ .++++|++|++++|.+.+ .++...+..+++|++|++++|.+++..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 7777777777765543 11222 566667777777666652 2222333355666666666666665443 234445
Q ss_pred CCCcEEEeeCcccc
Q 043765 295 SNLTILEMGLNSFS 308 (452)
Q Consensus 295 ~~L~~L~L~~n~l~ 308 (452)
++|++|++++|.++
T Consensus 253 ~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CCCCEEECCCCccC
Confidence 55555555555544
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.6e-28 Score=226.88 Aligned_cols=250 Identities=19% Similarity=0.175 Sum_probs=160.9
Q ss_pred ccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCC-ccCCcccc-------CCCCCCEEEccCccccccCCC
Q 043765 121 TFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIH-GKIPSILS-------KCKQLQQLNLGLNDLSGAIPK 192 (452)
Q Consensus 121 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~ 192 (452)
++...+|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 44556677777777777 677777662 778888888874 34555444 688999999999999888887
Q ss_pred Cc--cCCCCccEEEeecccceecCCcccCCC-----CCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCC--
Q 043765 193 EI--GNFTSLQKISLIYNKLHGEIPLEVGNL-----RNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLP-- 263 (452)
Q Consensus 193 ~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-- 263 (452)
.+ +.+++|++|++++|.+.+. |..++.+ ++|++|++++|.+.+..+..+.++++|+.|++++|.+.+.++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8899999999999998865 7767666 888888888888888887888888888888888887654321
Q ss_pred hhh-hcCCCCCcEEeccccceee---cCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhh
Q 043765 264 SRT-DLALPNIDYLGLAINRFSG---TIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIG 339 (452)
Q Consensus 264 ~~~-~~~~~~L~~L~l~~n~l~~---~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~ 339 (452)
... +..+++|++|++++|.+++ .....+.++++|++|++
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L------------------------------------- 235 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL------------------------------------- 235 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC-------------------------------------
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC-------------------------------------
Confidence 111 1245555555555555542 11122334444455554
Q ss_pred cchhccceeecccccCcccCc-ccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCCCCC
Q 043765 340 NLSISMERLYIFNCSISGNIP-QVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLD 418 (452)
Q Consensus 340 ~~~~~L~~L~L~~~~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 418 (452)
++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+
T Consensus 236 -----------s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~ 299 (312)
T 1wwl_A 236 -----------SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVG 299 (312)
T ss_dssp -----------TTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEE
T ss_pred -----------CCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCC
Confidence 4444443332 22334455555555555555 3333333 5566666666666543 33 55566666
Q ss_pred EEeCcCCcccc
Q 043765 419 TLILDGNEFSE 429 (452)
Q Consensus 419 ~L~l~~n~~~~ 429 (452)
.|++++|++++
T Consensus 300 ~L~L~~N~l~~ 310 (312)
T 1wwl_A 300 NLSLKGNPFLD 310 (312)
T ss_dssp EEECTTCTTTC
T ss_pred EEeccCCCCCC
Confidence 66666666543
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-26 Score=227.84 Aligned_cols=237 Identities=21% Similarity=0.206 Sum_probs=203.3
Q ss_pred cCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCC
Q 043765 71 PQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLP 150 (452)
Q Consensus 71 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 150 (452)
.....+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .+|. .+
T Consensus 28 ~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~ 99 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GP 99 (487)
T ss_dssp TTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CT
T ss_pred HhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CC
Confidence 334455699999999999998888899999999999999999987665 899999999999999998 4442 48
Q ss_pred CCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccC-CCCCCCEEEc
Q 043765 151 NLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVG-NLRNQDTLWL 229 (452)
Q Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l 229 (452)
+|++|++++|.+.+..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+.+..|..+. .++.|++|++
T Consensus 100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 999999999999866544 468899999999999988888999999999999999999987787776 7999999999
Q ss_pred cCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccc-
Q 043765 230 GSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS- 308 (452)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~- 308 (452)
++|.+++..+ ...+++|+.|++++|.+++ ++..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.
T Consensus 177 s~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 177 QYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp TTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred CCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHc-CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 9999998743 4468999999999999985 554444 88999999999999996 5677899999999999999987
Q ss_pred eeCCccccCchhHHH
Q 043765 309 GFIPNKIGNLRTLQT 323 (452)
Q Consensus 309 ~~~~~~l~~l~~L~~ 323 (452)
+.+|..+..++.++.
T Consensus 252 ~~~~~~~~~l~~L~~ 266 (487)
T 3oja_A 252 GTLRDFFSKNQRVQT 266 (487)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred cchHHHHHhCCCCcE
Confidence 556666666666654
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.2e-27 Score=230.41 Aligned_cols=245 Identities=19% Similarity=0.200 Sum_probs=159.1
Q ss_pred cCchHHhhc---CCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 140 ELPETICNY---LPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 140 ~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
.+|..+... +++|++|++++|.+.+..|..|..+++|++|++++|.+++..| ++.+++|++|++++|.+.+..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-- 96 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-- 96 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE--
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC--
Confidence 455555541 2378888888888887767788888888888888888875544 778888888888888877432
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCcccc-CCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFIT-NAS 295 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~~~ 295 (452)
..++|++|++++|.+.+..+.. +++|+.|++++|.+.+..+..+. .+++|+.|++++|.+++..|..+. .++
T Consensus 97 ---~~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 97 ---VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp ---ECTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ---CCCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 2267777777777777665543 45677777777777644443333 566777777777777766655554 567
Q ss_pred CCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEcc
Q 043765 296 NLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLG 375 (452)
Q Consensus 296 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~ 375 (452)
+|++|++++|.+.+..+.. .++ +|+.|++++|.+++.. ..+..+++|+.|+++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~-------------------------~l~-~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKGQV-------------------------VFA-KLKTLDLSSNKLAFMG-PEFQSAAGVTWISLR 222 (487)
T ss_dssp TCCEEECTTSCCCEEECCC-------------------------CCT-TCCEEECCSSCCCEEC-GGGGGGTTCSEEECT
T ss_pred cccEEecCCCccccccccc-------------------------cCC-CCCEEECCCCCCCCCC-HhHcCCCCccEEEec
Confidence 7777777777665442211 111 6666666666666433 335666666666666
Q ss_pred CCcCCcccchhccCCCccceeecccCccc-ccChhhhcCCCCCCEEeCc
Q 043765 376 GNELTGPVLVTFDRLQNLQGLFLSSNKLA-GSIPDDLCRLHRLDTLILD 423 (452)
Q Consensus 376 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~ 423 (452)
+|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 223 ~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 223 NNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666664 4455566666666666666666 4555556666666655554
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6.1e-25 Score=200.52 Aligned_cols=224 Identities=19% Similarity=0.197 Sum_probs=133.2
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.++..+.+++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~~-ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSS-CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccc-cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 45566666553 444443 467788888887776666677777777777777777776655566666666666666666
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCcccccc-CCCCccCCCCccEEEeecccceecCC
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGA-IPKEIGNFTSLQKISLIYNKLHGEIP 215 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~ 215 (452)
+++..+..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..++.+++|++|++++|.++
T Consensus 88 l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~---- 162 (276)
T 2z62_A 88 IQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---- 162 (276)
T ss_dssp CCEECTTTTTT-CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC----
T ss_pred cCccChhhhcC-CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC----
Confidence 66333333333 66666666666666544444455555566666655555432 3444555555555555555444
Q ss_pred cccCCCCCCCEEEccCCcccccccccccCCCCcc----EEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccc
Q 043765 216 LEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVK----EIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFI 291 (452)
Q Consensus 216 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 291 (452)
+..+..+..+++|+ .+++++|.+. .++...+ ...+|+.|++++|.+++..+..|
T Consensus 163 --------------------~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 163 --------------------SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp --------------------EECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTT
T ss_pred --------------------cCCHHHhhhhhhccccceeeecCCCccc-ccCcccc-CCCcccEEECCCCceeecCHhHh
Confidence 44333333333333 5666666665 3333333 33467777777777776655566
Q ss_pred cCCCCCcEEEeeCccccee
Q 043765 292 TNASNLTILEMGLNSFSGF 310 (452)
Q Consensus 292 ~~~~~L~~L~L~~n~l~~~ 310 (452)
..+++|+.|++++|.+.+.
T Consensus 221 ~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTCCSCCEEECCSSCBCCC
T ss_pred cccccccEEEccCCccccc
Confidence 7777888888888877643
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.3e-25 Score=201.52 Aligned_cols=225 Identities=21% Similarity=0.217 Sum_probs=145.0
Q ss_pred EEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCc
Q 043765 81 TLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNN 160 (452)
Q Consensus 81 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 160 (452)
.++.++..++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~------------------------ 63 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------------------------ 63 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC------------------------
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc------------------------
Confidence 3444444444 3443332 356666666666654444445555555555555544
Q ss_pred cCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccccc-cc
Q 043765 161 MIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGI-VL 239 (452)
Q Consensus 161 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~ 239 (452)
+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+
T Consensus 64 -l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~ 142 (276)
T 2z62_A 64 -IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142 (276)
T ss_dssp -CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred -CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCc
Confidence 4433344455555555555555555544445555556666666666655544444566677777777777777664 36
Q ss_pred ccccCCCCccEEeccCCcCcccCChhhhcCCCCCc----EEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccc
Q 043765 240 STIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNID----YLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKI 315 (452)
Q Consensus 240 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l 315 (452)
..+.++++|+.|++++|.+++..+.. +..+++++ .+++++|.+++..+..+. ..+|++|++++|.+.+..+..+
T Consensus 143 ~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTT
T ss_pred hhhccCCCCCEEECCCCCCCcCCHHH-hhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHh
Confidence 77888899999999999998443333 33555565 899999999977766665 4589999999999998877778
Q ss_pred cCchhHHHh-hcCCCCcccCC
Q 043765 316 GNLRTLQTA-LSNNPLDGILP 335 (452)
Q Consensus 316 ~~l~~L~~~-~~~~~~~~~~p 335 (452)
..++.|+.+ +..|++.+..|
T Consensus 221 ~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TTCCSCCEEECCSSCBCCCTT
T ss_pred cccccccEEEccCCcccccCC
Confidence 888888776 88888887654
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.3e-28 Score=247.98 Aligned_cols=370 Identities=11% Similarity=0.104 Sum_probs=159.3
Q ss_pred CCCCCCEEeCCCCcCCCcCChhhh-CCCCCCEEeCCCC-cCccc-CCccccCCCCCCEEECcCCCCcccCchHHh---hc
Q 043765 75 NLSSLVTLDLSQNKLSGDIPSSIF-TMHTLKFLYFSDN-QLSGS-LSSFTFNMSSMLVSDLSTNRFSGELPETIC---NY 148 (452)
Q Consensus 75 ~l~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~ 148 (452)
.+++|++|+++++.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455666666666666554444443 4666666666666 33321 333334566666666666665533322221 12
Q ss_pred CCCCCEEEccCcc--CCc-cCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecc-------cceecCCccc
Q 043765 149 LPNLKALLLNNNM--IHG-KIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYN-------KLHGEIPLEV 218 (452)
Q Consensus 149 l~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-------~~~~~~~~~~ 218 (452)
+++|++|++++|. +.. .++..+..+++|++|++++|.....++..+..+++|++|++..+ .+.+ ++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence 4566666666664 110 01111234566666666666322224444555566666664332 1221 22234
Q ss_pred CCCCCCCEE-EccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceee-cCCccccCCCC
Q 043765 219 GNLRNQDTL-WLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSG-TIPSFITNASN 296 (452)
Q Consensus 219 ~~l~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~ 296 (452)
.++++|+.+ .+.+... ...+..+..+++|++|++++|.+.+.........+++|+.|++++| ++. .++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 444455544 2221111 1112222234445555555554432222222224455555555544 221 11111223445
Q ss_pred CcEEEeeC---------cccceeCCccc-cCchhHHHh-hcCCCCcccCCchhh-cchhccceeecc--c----ccCccc
Q 043765 297 LTILEMGL---------NSFSGFIPNKI-GNLRTLQTA-LSNNPLDGILPSSIG-NLSISMERLYIF--N----CSISGN 358 (452)
Q Consensus 297 L~~L~L~~---------n~l~~~~~~~l-~~l~~L~~~-~~~~~~~~~~p~~~~-~~~~~L~~L~L~--~----~~l~~~ 358 (452)
|++|++.+ +.+++.....+ ..++.|+.+ +..+.+.+..+..+. .++ +|+.|+++ + +.+++.
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP-NMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT-TCCEEEEEESSTTCCCTTTCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC-CcceeEeecccCCCcccccCC
Confidence 55554422 11111100000 011122211 222233322222232 233 56666665 2 233311
Q ss_pred -----CcccccCCCCCCEEEccCCcCCcccchhccC-CCccceeecccCcccccChhhh-cCCCCCCEEeCcCCcccccC
Q 043765 359 -----IPQVISNLTNFTVLQLGGNELTGPVLVTFDR-LQNLQGLFLSSNKLAGSIPDDL-CRLHRLDTLILDGNEFSESI 431 (452)
Q Consensus 359 -----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~n~~~~~~ 431 (452)
++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 111133455566666654 444433333333 5556666666665554433333 44566666666666554322
Q ss_pred C-ccccCCCCCCceecccc
Q 043765 432 P-TCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 432 ~-~~~~~~~~L~~L~l~~~ 449 (452)
. .....+++|++|+++.|
T Consensus 498 ~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSC 516 (594)
T ss_dssp HHHTGGGGGGSSEEEEESS
T ss_pred HHHHHHhCCCCCEEeeeCC
Confidence 2 23344555666555533
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4.8e-24 Score=193.78 Aligned_cols=199 Identities=25% Similarity=0.333 Sum_probs=138.5
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+++++++++. +|..+. +++++|++++|++++..+.+|.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 20 ~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 20 SVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 68888888874 555443 578888888888876666678888888888888888876666666777778888887777
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+..+.
T Consensus 97 l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 97 LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 77 55555444477777777777777766566667777777777777777655555566677777777777776654445
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCc
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLS 259 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 259 (452)
.|..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 5666666677777666666666555666666666666666554
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6.7e-24 Score=192.85 Aligned_cols=202 Identities=24% Similarity=0.284 Sum_probs=135.0
Q ss_pred CCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEc
Q 043765 78 SLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLL 157 (452)
Q Consensus 78 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 157 (452)
..+.++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.++ .++..++..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 5678999998888 4565443 67889999999888777677888888888888888887 666666555778888888
Q ss_pred cCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccccc
Q 043765 158 NNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGI 237 (452)
Q Consensus 158 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 237 (452)
++|.+....+..|..+++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 88777755555667777777777777777655555566666666666666666544333455555555555555555554
Q ss_pred ccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccc
Q 043765 238 VLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 238 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
.+..+.++ ++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 173 ~~~~~~~l-------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKL-------------------------TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTC-------------------------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccC-------------------------CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 44444444 45555555555555444445666666666666666654
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.4e-24 Score=195.94 Aligned_cols=210 Identities=22% Similarity=0.296 Sum_probs=142.0
Q ss_pred CCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCC
Q 043765 73 LGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNL 152 (452)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 152 (452)
+..+++|+.|++++|.++. + ..+..+++|++|++++|.+.+. ..+.++++|++|++++|.++ .++...+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence 4456778888888877763 2 2467777888888888777642 36677777777777777777 4444433337777
Q ss_pred CEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCC
Q 043765 153 KALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSN 232 (452)
Q Consensus 153 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 232 (452)
++|++++|.+.+..+..|..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..++.+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 77777777777555556677777777777777777555555677777777777777776555555667777777777777
Q ss_pred cccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCC
Q 043765 233 NLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNAS 295 (452)
Q Consensus 233 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 295 (452)
.+++..+..+..+++|+.|++++|.+.+ .+++++.++++.|.++|.+|.+++.++
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 7777666666677777777777776542 344566666666666666666555443
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.2e-23 Score=192.78 Aligned_cols=203 Identities=21% Similarity=0.238 Sum_probs=116.9
Q ss_pred CCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCC
Q 043765 73 LGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNL 152 (452)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 152 (452)
+.++++++++++++++++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.++ .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 456677777777777776 4454443 57777777777777666666777777777777777666 33332 225666
Q ss_pred CEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCC
Q 043765 153 KALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSN 232 (452)
Q Consensus 153 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 232 (452)
++|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 66666666665 44555555666666666666655444444555555555555555554333333444444444444444
Q ss_pred cccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccc
Q 043765 233 NLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 233 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
+++..++..+. .+++|+.|++++|+++ .+|..+...++|+.+++++|.+.
T Consensus 159 ~l~~l~~~~~~-------------------------~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLN-------------------------GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTT-------------------------TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhc-------------------------CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 44444433334 4455555555555555 33444445556666666666654
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.1e-25 Score=211.65 Aligned_cols=255 Identities=17% Similarity=0.118 Sum_probs=199.7
Q ss_pred EEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCC----hhhhCCC-CCCEEeCCCCcCcccCCccccCC-----CCC
Q 043765 58 LNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIP----SSIFTMH-TLKFLYFSDNQLSGSLSSFTFNM-----SSM 127 (452)
Q Consensus 58 l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L 127 (452)
.+++.+++++.+|..+...++|++|++++|.+++..+ .++..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5789999999888877777789999999999997666 7788898 99999999999998777777665 999
Q ss_pred CEEECcCCCCcccCchHHhhc---C-CCCCEEEccCccCCccCCcc----ccC-CCCCCEEEccCccccccCC----CCc
Q 043765 128 LVSDLSTNRFSGELPETICNY---L-PNLKALLLNNNMIHGKIPSI----LSK-CKQLQQLNLGLNDLSGAIP----KEI 194 (452)
Q Consensus 128 ~~L~l~~n~~~~~~~~~~~~~---l-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~l~~n~~~~~~~----~~~ 194 (452)
++|++++|.+++..+..+... + ++|++|++++|.+++..+.. +.. .++|++|++++|.++...+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999999986666654431 3 89999999999998655443 334 3699999999999975333 334
Q ss_pred cCCC-CccEEEeecccceecCCcc----cCCC-CCCCEEEccCCcccccc----cccccC-CCCccEEeccCCcCcccCC
Q 043765 195 GNFT-SLQKISLIYNKLHGEIPLE----VGNL-RNQDTLWLGSNNLVGIV----LSTIFN-KSAVKEIDLFNNSLSGNLP 263 (452)
Q Consensus 195 ~~l~-~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~l~~n~~~~~~~ 263 (452)
...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+.+.. +..+.. .++|+.|++++|.+.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4555 9999999999998655433 3445 59999999999998743 334444 4699999999999985433
Q ss_pred h---hhhcCCCCCcEEeccccceeec-------CCccccCCCCCcEEEeeCcccceeCC
Q 043765 264 S---RTDLALPNIDYLGLAINRFSGT-------IPSFITNASNLTILEMGLNSFSGFIP 312 (452)
Q Consensus 264 ~---~~~~~~~~L~~L~l~~n~l~~~-------~~~~l~~~~~L~~L~L~~n~l~~~~~ 312 (452)
. .....+++|+.|++++|.+... ++..+..+++|++|++++|.+.+..+
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 2 2334778999999999985432 33467788999999999999876544
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.9e-23 Score=190.00 Aligned_cols=226 Identities=18% Similarity=0.253 Sum_probs=148.6
Q ss_pred CCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEc
Q 043765 78 SLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLL 157 (452)
Q Consensus 78 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 157 (452)
.+..+++.++.+.+. .....+++|+.|++++|.+... ..+..+++|++|++++|.+. .++ .+.. +++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l~~-l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-ALKE-LTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GGTT-CTTCCEEEC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hhcC-CCCCCEEEC
Confidence 344455555555533 2355677888888888877632 34677788888888888776 333 4444 777888888
Q ss_pred cCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccccc
Q 043765 158 NNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGI 237 (452)
Q Consensus 158 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 237 (452)
++|.+++..+..|..+++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 87777766566677777777777777777766566667777777777777777755555566777777777777777766
Q ss_pred ccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccC
Q 043765 238 VLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGN 317 (452)
Q Consensus 238 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 317 (452)
.+..+..+++|+.|++++|.+.+. +...+..+++|+.|++++|.+.+ .+++++.++++.|.+.|.+|..++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CHHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 666666677777777777766633 33333356666666666665543 2445666666666666666655544
Q ss_pred c
Q 043765 318 L 318 (452)
Q Consensus 318 l 318 (452)
+
T Consensus 245 ~ 245 (272)
T 3rfs_A 245 V 245 (272)
T ss_dssp B
T ss_pred c
Confidence 3
No 80
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.9e-26 Score=233.78 Aligned_cols=387 Identities=14% Similarity=0.100 Sum_probs=262.7
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCC---cCC------------hhhhCCCCCCEEeCCCCcCcccCCccc
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSG---DIP------------SSIFTMHTLKFLYFSDNQLSGSLSSFT 121 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~---~~~------------~~~~~l~~L~~L~l~~n~l~~~~~~~~ 121 (452)
.+++..+.... .+..+.++++|++|+++++.... ..| .....+++|++|++++|.+++..+..+
T Consensus 47 ~l~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 47 KVFIGNCYAVS-PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp EEEESSTTSSC-HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred EEeeccccccC-HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 56666544321 12235678899999999875321 111 123468899999999999887666666
Q ss_pred c-CCCCCCEEECcCC-CCcccCchHHhhcCCCCCEEEccCccCCccCCcc----ccCCCCCCEEEccCcc--ccc-cCCC
Q 043765 122 F-NMSSMLVSDLSTN-RFSGELPETICNYLPNLKALLLNNNMIHGKIPSI----LSKCKQLQQLNLGLND--LSG-AIPK 192 (452)
Q Consensus 122 ~-~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~--~~~-~~~~ 192 (452)
. .+++|++|++++| .++......+...+++|++|++++|.+++..+.. ...+++|++|++++|. +.. .++.
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 5 6999999999999 5543323344444999999999999876544333 3477899999999986 221 1112
Q ss_pred CccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCc-------ccccccccccCCCCccEE-eccCCcCcccCCh
Q 043765 193 EIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNN-------LVGIVLSTIFNKSAVKEI-DLFNNSLSGNLPS 264 (452)
Q Consensus 193 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L-~l~~n~~~~~~~~ 264 (452)
.+..+++|+.|++++|...+.++..+..+++|++|++..+. +.+.. ..+.++++|+.+ .+.+... +.++.
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~l~~~~~L~~Ls~~~~~~~-~~l~~ 283 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS-VALSGCKELRCLSGFWDAVP-AYLPA 283 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH-HHHHTCTTCCEEECCBTCCG-GGGGG
T ss_pred HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH-HHHhcCCCcccccCCcccch-hhHHH
Confidence 23457999999999984333467778889999999966543 33433 367889999999 4443322 23443
Q ss_pred hhhcCCCCCcEEeccccceeecC-CccccCCCCCcEEEeeCccccee-CCccccCchhHHHh-h---------cCCCCcc
Q 043765 265 RTDLALPNIDYLGLAINRFSGTI-PSFITNASNLTILEMGLNSFSGF-IPNKIGNLRTLQTA-L---------SNNPLDG 332 (452)
Q Consensus 265 ~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~~-~---------~~~~~~~ 332 (452)
... .+++|++|++++|.++... ...+..+++|++|++++| +... .+.....++.|+.+ + ..+.+.+
T Consensus 284 ~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 284 VYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GHH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 333 6899999999999977532 234678999999999988 3322 22222234444443 2 2233333
Q ss_pred cCCchhh-cchhccceeecccccCcccCccccc-CCCCCCEEEcc--C----CcCCcc-----cchhccCCCccceeecc
Q 043765 333 ILPSSIG-NLSISMERLYIFNCSISGNIPQVIS-NLTNFTVLQLG--G----NELTGP-----VLVTFDRLQNLQGLFLS 399 (452)
Q Consensus 333 ~~p~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~L~~L~l~--~----n~i~~~-----~~~~~~~~~~L~~L~l~ 399 (452)
.....+. .++ +|+.|.++.+.+++..+..+. .+++|++|+++ + +.+++. ++..+..+++|+.|+++
T Consensus 362 ~~l~~l~~~~~-~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 362 QGLVSVSMGCP-KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHHHCT-TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHhch-hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence 3233333 355 899999988888866555554 58999999999 4 566632 22336678999999998
Q ss_pred cCcccccChhhhcC-CCCCCEEeCcCCcccccCCccc-cCCCCCCceeccccC
Q 043765 400 SNKLAGSIPDDLCR-LHRLDTLILDGNEFSESIPTCL-GNLTSLEGSLLNVAD 450 (452)
Q Consensus 400 ~n~i~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~~~ 450 (452)
+ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|+++.|.
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 7 777665566655 8999999999999976544444 779999999998653
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.3e-22 Score=185.93 Aligned_cols=202 Identities=24% Similarity=0.279 Sum_probs=150.3
Q ss_pred ccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCc
Q 043765 121 TFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSL 200 (452)
Q Consensus 121 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 200 (452)
+.+++++++++++++.++ .+|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+++..+ .+.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 445555666666666555 555554 3567777777777776666677777777777777777764332 2667788
Q ss_pred cEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccc
Q 043765 201 QKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAI 280 (452)
Q Consensus 201 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 280 (452)
++|++++|.+. .+|..+..+++|++|++++|++++..+..+.++++|+.|++++|.+. .++...+..+++|+.|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCC
Confidence 88888888776 56777778888888888888888888788888888999999998887 55666555889999999999
Q ss_pred cceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh-hcCCCCc
Q 043765 281 NRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA-LSNNPLD 331 (452)
Q Consensus 281 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~-~~~~~~~ 331 (452)
|++++..+..|..+++|+.|++++|.+. .+|..+.....|+.+ +..|++.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 9999777778899999999999999998 555555555555554 5666654
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=7.7e-25 Score=207.77 Aligned_cols=227 Identities=21% Similarity=0.174 Sum_probs=140.6
Q ss_pred EEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCC----ccccCCC-CCCEEECcCCCCcccCchHHhhc----CCC
Q 043765 81 TLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLS----SFTFNMS-SMLVSDLSTNRFSGELPETICNY----LPN 151 (452)
Q Consensus 81 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~----l~~ 151 (452)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+... .++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788899988877767666779999999999987666 6777888 89999999999886656655541 278
Q ss_pred CCEEEccCccCCccCCcc----ccCC-CCCCEEEccCccccccCCCCc----cC-CCCccEEEeecccceecC----Ccc
Q 043765 152 LKALLLNNNMIHGKIPSI----LSKC-KQLQQLNLGLNDLSGAIPKEI----GN-FTSLQKISLIYNKLHGEI----PLE 217 (452)
Q Consensus 152 L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~----~~~ 217 (452)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 889999888887555443 3444 788888888888765444332 22 247777777777766322 222
Q ss_pred cCCCC-CCCEEEccCCcccccccccc----cCC-CCccEEeccCCcCccc----CChhhhcCCCCCcEEeccccceeecC
Q 043765 218 VGNLR-NQDTLWLGSNNLVGIVLSTI----FNK-SAVKEIDLFNNSLSGN----LPSRTDLALPNIDYLGLAINRFSGTI 287 (452)
Q Consensus 218 ~~~l~-~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~ 287 (452)
+...+ +|++|++++|.+++..+..+ ... ++|+.|++++|.+.+. ++.......++|++|++++|.++...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33343 66666666666665544322 233 3566666666665531 22222212335555555555554332
Q ss_pred C----ccccCCCCCcEEEeeCccc
Q 043765 288 P----SFITNASNLTILEMGLNSF 307 (452)
Q Consensus 288 ~----~~l~~~~~L~~L~L~~n~l 307 (452)
+ ..+..+++|++|++++|.+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCc
Confidence 2 2234445555555555543
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.1e-22 Score=181.30 Aligned_cols=178 Identities=19% Similarity=0.164 Sum_probs=97.3
Q ss_pred CCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCc-CcccCCccccCCCCCCEEECcC-CCCcccCchHHhhcCCCCCEE
Q 043765 78 SLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQ-LSGSLSSFTFNMSSMLVSDLST-NRFSGELPETICNYLPNLKAL 155 (452)
Q Consensus 78 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L 155 (452)
++++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |.++ .++...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 67777777777776656667777777777777775 6655555666666666666666 6665 4443333335666666
Q ss_pred EccCccCCccCCccccCCCCCC---EEEccCc-cccccCCCCccCCCCcc-EEEeecccceecCCcccCCCCCCCEEEcc
Q 043765 156 LLNNNMIHGKIPSILSKCKQLQ---QLNLGLN-DLSGAIPKEIGNFTSLQ-KISLIYNKLHGEIPLEVGNLRNQDTLWLG 230 (452)
Q Consensus 156 ~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 230 (452)
++++|.+++ +|. |..+++|+ +|++++| .+....+..|..+++|+ +|++++|.+. .+|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 666666553 343 55555555 5555555 55444444455555555 5555555554 222221111444444444
Q ss_pred CCc-ccccccccccCC-CCccEEeccCCcCc
Q 043765 231 SNN-LVGIVLSTIFNK-SAVKEIDLFNNSLS 259 (452)
Q Consensus 231 ~~~-~~~~~~~~l~~~-~~L~~L~l~~n~~~ 259 (452)
+|+ +++..+..+.++ ++|+.|++++|.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 442 444444444444 44444444444443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.2e-24 Score=208.42 Aligned_cols=251 Identities=18% Similarity=0.196 Sum_probs=130.4
Q ss_pred cCchHHhhcCCCCCEEEccCccCCccC----CccccCCCCCCEEEccCccc---cccCCCCc-------cCCCCccEEEe
Q 043765 140 ELPETICNYLPNLKALLLNNNMIHGKI----PSILSKCKQLQQLNLGLNDL---SGAIPKEI-------GNFTSLQKISL 205 (452)
Q Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~---~~~~~~~~-------~~l~~L~~L~l 205 (452)
.++..+.. +++|++|++++|.+.... +..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 45566655 788888888888777542 23466778888888877643 33333332 44555556665
Q ss_pred eccccee----cCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCC---------CC
Q 043765 206 IYNKLHG----EIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLAL---------PN 272 (452)
Q Consensus 206 ~~n~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~---------~~ 272 (452)
++|.+.+ .++..+..+++|++|++++|.+....+..+... +. .+ ++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--------------------l~-~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--------------------LQ-ELAVNKKAKNAPP 160 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--------------------HH-HHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--------------------HH-HHhhhhhcccCCC
Confidence 5555543 233344455555555555555543322222211 00 11 45
Q ss_pred CcEEecccccee-ecCC---ccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhcccee
Q 043765 273 IDYLGLAINRFS-GTIP---SFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERL 348 (452)
Q Consensus 273 L~~L~l~~n~l~-~~~~---~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L 348 (452)
|++|++++|+++ ..++ ..+..+++|++|++++|.+.... ...+ .|..+..++ +|+.|
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g------~~~l------------~~~~l~~~~-~L~~L 221 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG------IEHL------------LLEGLAYCQ-ELKVL 221 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH------HHHH------------HHTTGGGCT-TCCEE
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhH------HHHH------------HHHHhhcCC-CccEE
Confidence 555555555554 1222 23445555555555555443110 0000 001122222 55666
Q ss_pred ecccccCc----ccCcccccCCCCCCEEEccCCcCCcc----cchhccC--CCccceeecccCcccc----cChhhh-cC
Q 043765 349 YIFNCSIS----GNIPQVISNLTNFTVLQLGGNELTGP----VLVTFDR--LQNLQGLFLSSNKLAG----SIPDDL-CR 413 (452)
Q Consensus 349 ~L~~~~l~----~~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~--~~~L~~L~l~~n~i~~----~~~~~~-~~ 413 (452)
++++|.++ ..+|..+..+++|++|++++|.+++. ++..+.. +++|+.|++++|++++ .+|..+ .+
T Consensus 222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 66666554 34455555666666666666666553 3334422 6666666666666665 355555 44
Q ss_pred CCCCCEEeCcCCcccccC
Q 043765 414 LHRLDTLILDGNEFSESI 431 (452)
Q Consensus 414 l~~L~~L~l~~n~~~~~~ 431 (452)
+++|+.|++++|++++..
T Consensus 302 l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 302 MPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTSBSCTTS
T ss_pred CCCceEEEccCCcCCcch
Confidence 666666666666665543
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.9e-24 Score=203.11 Aligned_cols=250 Identities=17% Similarity=0.246 Sum_probs=183.6
Q ss_pred eEEeCCCCccccCCcCCCCC--CCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCccc-CCccccCCCCCCEEECc
Q 043765 57 SLNISSFNLQGTIPPQLGNL--SSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGS-LSSFTFNMSSMLVSDLS 133 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~ 133 (452)
.++++++++. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+++
T Consensus 51 ~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 51 TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp EEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred eeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 6899988876 3445555 7899999999998876554 56789999999999988755 77778889999999999
Q ss_pred CCCCcccCchHHhhcCCCCCEEEccCc-cCCc-cCCccccCCCCCCEEEccCc-ccccc-CCCCccCCC-CccEEEeecc
Q 043765 134 TNRFSGELPETICNYLPNLKALLLNNN-MIHG-KIPSILSKCKQLQQLNLGLN-DLSGA-IPKEIGNFT-SLQKISLIYN 208 (452)
Q Consensus 134 ~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~l~~n 208 (452)
+|.+++..+..+.. +++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|
T Consensus 127 ~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 127 GLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 99888777777776 899999999998 5664 25566778889999999998 77643 455677788 8999999888
Q ss_pred c--ce-ecCCcccCCCCCCCEEEccCCc-ccccccccccCCCCccEEeccCCc-CcccCChhhhcCCCCCcEEeccccce
Q 043765 209 K--LH-GEIPLEVGNLRNQDTLWLGSNN-LVGIVLSTIFNKSAVKEIDLFNNS-LSGNLPSRTDLALPNIDYLGLAINRF 283 (452)
Q Consensus 209 ~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~l 283 (452)
. ++ +.++..+..+++|++|++++|. +++..+..+.++++|+.|++++|. +....... ...+++|+.|++++| +
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS-S
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc-c
Confidence 4 43 3456667778888888888888 666666677888888888888884 22111112 236788888888877 3
Q ss_pred eecCCccccCC-CCCcEEEeeCcccceeCCcccc
Q 043765 284 SGTIPSFITNA-SNLTILEMGLNSFSGFIPNKIG 316 (452)
Q Consensus 284 ~~~~~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~ 316 (452)
+. ..+..+ .+++.|++++|.+++..|..+.
T Consensus 284 ~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 284 PD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 32 123222 2355566778887776665544
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.8e-22 Score=179.91 Aligned_cols=195 Identities=13% Similarity=0.118 Sum_probs=169.8
Q ss_pred ceeEEeCCCCccccCCcCCCCCCCCCEEeCCCCc-CCCcCChhhhCCCCCCEEeCCC-CcCcccCCccccCCCCCCEEEC
Q 043765 55 SFSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNK-LSGDIPSSIFTMHTLKFLYFSD-NQLSGSLSSFTFNMSSMLVSDL 132 (452)
Q Consensus 55 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l 132 (452)
...|++++|++++..+..|..+++|++|++++|+ +++..+.+|.++++|++|++++ |.+++..+..|.++++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 3489999999998888889999999999999997 8877777899999999999998 9999887889999999999999
Q ss_pred cCCCCcccCchHHhhcCCCCC---EEEccCc-cCCccCCccccCCCCCC-EEEccCccccccCCCCccCCCCccEEEeec
Q 043765 133 STNRFSGELPETICNYLPNLK---ALLLNNN-MIHGKIPSILSKCKQLQ-QLNLGLNDLSGAIPKEIGNFTSLQKISLIY 207 (452)
Q Consensus 133 ~~n~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 207 (452)
++|.++ .+|. +.. +++|+ +|++++| .+....+..|..+++|+ +|++++|.++...+..+.. ++|++|++++
T Consensus 113 ~~n~l~-~lp~-~~~-l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 113 FNTGLK-MFPD-LTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEECCC-SCCC-CTT-CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCc-cccc-ccc-ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 999998 5776 444 88888 9999999 99877777899999999 9999999998444444555 8999999999
Q ss_pred cc-ceecCCcccCCC-CCCCEEEccCCcccccccccccCCCCccEEeccCC
Q 043765 208 NK-LHGEIPLEVGNL-RNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNN 256 (452)
Q Consensus 208 n~-~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 256 (452)
|+ +++..+..|..+ ++|++|++++|.+++.++. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 95 886667789999 9999999999999977654 5678888888775
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.3e-21 Score=175.71 Aligned_cols=175 Identities=21% Similarity=0.274 Sum_probs=113.0
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
++++++++++. +|..+. +++++|++++|++++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 18 ~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 18 EVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp EEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 67888888774 554443 578888888888887777778888888888888888877666667777777777777777
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+.
T Consensus 95 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 95 LA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 76 44444433366677777766666644444556666666666666666544444555555566666555555544344
Q ss_pred ccCCCCCCCEEEccCCccc
Q 043765 217 EVGNLRNQDTLWLGSNNLV 235 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~ 235 (452)
.+..+++|++|++++|.+.
T Consensus 174 ~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTCTTCCEEECCSCCBC
T ss_pred HHhCCCCCCEEEeeCCcee
Confidence 4445555555555555443
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2e-24 Score=206.87 Aligned_cols=242 Identities=20% Similarity=0.217 Sum_probs=181.3
Q ss_pred CCcCCCCCCCCCEEeCCCCcCCCcCC----hhhhCCCCCCEEeCCCCcC---cccCCccc-------cCCCCCCEEECcC
Q 043765 69 IPPQLGNLSSLVTLDLSQNKLSGDIP----SSIFTMHTLKFLYFSDNQL---SGSLSSFT-------FNMSSMLVSDLST 134 (452)
Q Consensus 69 ~~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l---~~~~~~~~-------~~l~~L~~L~l~~ 134 (452)
++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45556778889999999998876533 3466788999999988643 34445443 6889999999999
Q ss_pred CCCcc----cCchHHhhcCCCCCEEEccCccCCccCCcc----ccCC---------CCCCEEEccCcccc-ccCC---CC
Q 043765 135 NRFSG----ELPETICNYLPNLKALLLNNNMIHGKIPSI----LSKC---------KQLQQLNLGLNDLS-GAIP---KE 193 (452)
Q Consensus 135 n~~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~l~~n~~~-~~~~---~~ 193 (452)
|.+++ .+|..+.. +++|++|++++|.+....+.. +..+ ++|++|++++|.++ ..++ ..
T Consensus 104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 99885 36666666 889999999999886433332 3333 88999999999886 2333 35
Q ss_pred ccCCCCccEEEeeccccee-----cCCcccCCCCCCCEEEccCCccc----ccccccccCCCCccEEeccCCcCccc---
Q 043765 194 IGNFTSLQKISLIYNKLHG-----EIPLEVGNLRNQDTLWLGSNNLV----GIVLSTIFNKSAVKEIDLFNNSLSGN--- 261 (452)
Q Consensus 194 ~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~n~~~~~--- 261 (452)
+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6678899999999998762 23347788899999999999986 55566788889999999999988754
Q ss_pred -CChhhh-cCCCCCcEEeccccceee----cCCccc-cCCCCCcEEEeeCcccceeC
Q 043765 262 -LPSRTD-LALPNIDYLGLAINRFSG----TIPSFI-TNASNLTILEMGLNSFSGFI 311 (452)
Q Consensus 262 -~~~~~~-~~~~~L~~L~l~~n~l~~----~~~~~l-~~~~~L~~L~L~~n~l~~~~ 311 (452)
++..+. ..+++|+.|++++|.++. .+|..+ .++++|++|++++|.+.+..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 233332 138899999999999987 366666 66899999999999887554
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.2e-23 Score=197.62 Aligned_cols=255 Identities=14% Similarity=0.161 Sum_probs=124.9
Q ss_pred CCEEECcCCCCcccCchHHhhcC--CCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEE
Q 043765 127 MLVSDLSTNRFSGELPETICNYL--PNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKIS 204 (452)
Q Consensus 127 L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 204 (452)
++.++++++.+. +..+.. + ++++++++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 49 ~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~--------------- 108 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS--------------- 108 (336)
T ss_dssp SSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH---------------
T ss_pred heeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH---------------
Confidence 456666665554 222222 3 5566666666555543333 33455555555555554432
Q ss_pred eecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCC-cCccc-CChhhhcCCCCCcEEecccc-
Q 043765 205 LIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNN-SLSGN-LPSRTDLALPNIDYLGLAIN- 281 (452)
Q Consensus 205 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~~L~~L~l~~n- 281 (452)
.++..+..+++|++|++++|.+.+..+..+.++++|++|++++| .+++. ++.. ...+++|++|++++|
T Consensus 109 --------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 109 --------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCF 179 (336)
T ss_dssp --------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCT
T ss_pred --------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCC
Confidence 03334444445555555555444444444445555555555555 33321 2222 224555555555555
Q ss_pred ceeec-CCccccCCC-CCcEEEeeCcc--cceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeeccccc-Cc
Q 043765 282 RFSGT-IPSFITNAS-NLTILEMGLNS--FSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCS-IS 356 (452)
Q Consensus 282 ~l~~~-~~~~l~~~~-~L~~L~L~~n~--l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~-l~ 356 (452)
.+++. ++..+..++ +|++|++++|. ++. +.+|..+..++ +|+.|++++|. ++
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~----------------------~~l~~~~~~~~-~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQK----------------------SDLSTLVRRCP-NLVHLDLSDSVMLK 236 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH----------------------HHHHHHHHHCT-TCSEEECTTCTTCC
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCH----------------------HHHHHHHhhCC-CCCEEeCCCCCcCC
Confidence 55532 344455556 66666666653 210 01111222333 66666666666 45
Q ss_pred ccCcccccCCCCCCEEEccCCc-CCcccchhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCccc
Q 043765 357 GNIPQVISNLTNFTVLQLGGNE-LTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCL 435 (452)
Q Consensus 357 ~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 435 (452)
+..+..+..+++|++|++++|. ++......+..+++|+.|++++| +++..-..+. ..+..|++++|.+++..|..+
T Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 4555556666666666666663 33333334556666777777666 4432222221 123444466666666665544
Q ss_pred c
Q 043765 436 G 436 (452)
Q Consensus 436 ~ 436 (452)
+
T Consensus 314 ~ 314 (336)
T 2ast_B 314 G 314 (336)
T ss_dssp S
T ss_pred c
Confidence 4
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3.1e-22 Score=185.71 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=96.8
Q ss_pred CCCCCEEEccCccCCccCCccc--cCCCCCCEEEccCccccccCC----CCccCCCCccEEEeecccceecCCcccCCCC
Q 043765 149 LPNLKALLLNNNMIHGKIPSIL--SKCKQLQQLNLGLNDLSGAIP----KEIGNFTSLQKISLIYNKLHGEIPLEVGNLR 222 (452)
Q Consensus 149 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 222 (452)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4668888888888877777766 777888888888888775433 2234567777777777777666666677777
Q ss_pred CCCEEEccCCccccc---cc-ccccCCCCccEEeccCCcCcccCCh---hhhcCCCCCcEEeccccceeecCCccccCC-
Q 043765 223 NQDTLWLGSNNLVGI---VL-STIFNKSAVKEIDLFNNSLSGNLPS---RTDLALPNIDYLGLAINRFSGTIPSFITNA- 294 (452)
Q Consensus 223 ~L~~L~l~~~~~~~~---~~-~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~- 294 (452)
+|++|++++|.+.+. .+ ..+..+++|++|++++|.++ .++. ..+..+++|++|++++|++++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 777777777766532 11 22345666666666666664 2222 122345556666666665555444444333
Q ss_pred --CCCcEEEeeCcccc
Q 043765 295 --SNLTILEMGLNSFS 308 (452)
Q Consensus 295 --~~L~~L~L~~n~l~ 308 (452)
++|++|++++|.+.
T Consensus 249 ~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCTTCCCEECCSSCCC
T ss_pred CcCcCCEEECCCCCCC
Confidence 34444444444443
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=8.9e-22 Score=182.17 Aligned_cols=193 Identities=23% Similarity=0.286 Sum_probs=115.1
Q ss_pred CCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCC
Q 043765 74 GNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLK 153 (452)
Q Consensus 74 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 153 (452)
..+++|++|+++++.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++ .+.. +++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTTCC
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCCCC
Confidence 356677788888777763 33 57777777777777777774433 677777777777777776 343 3333 67777
Q ss_pred EEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCc
Q 043765 154 ALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNN 233 (452)
Q Consensus 154 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 233 (452)
+|++++|.+.+ ++ .+..+++|++|++++|.+++..+ ++.+++|++|++++|.+.+ ++. +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 77777777664 22 26666777777777776653322 5566666666666666553 222 5555666666666665
Q ss_pred ccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEecccccee
Q 043765 234 LVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFS 284 (452)
Q Consensus 234 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 284 (452)
+++..+ +..+++|+.|++++|.+.+.. . ...+++|+.|++++|.++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS-P--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG-G--GTTCTTCCEEEEEEEEEE
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc-c--ccCCCCCCEEEccCCeee
Confidence 554433 445555555555555554222 1 124455555555555554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.1e-21 Score=174.35 Aligned_cols=181 Identities=22% Similarity=0.242 Sum_probs=141.5
Q ss_pred CCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEE
Q 043765 77 SSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALL 156 (452)
Q Consensus 77 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 156 (452)
...++++++++.++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+++ ++...+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEE
Confidence 35678999999888 5565554 688999999999988888888888999999999988884 4444333388888888
Q ss_pred ccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccc
Q 043765 157 LNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVG 236 (452)
Q Consensus 157 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 236 (452)
+++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 88888886666777888888888888888886666667788888888888888875555567788888888888888887
Q ss_pred cccccccCCCCccEEeccCCcCccc
Q 043765 237 IVLSTIFNKSAVKEIDLFNNSLSGN 261 (452)
Q Consensus 237 ~~~~~l~~~~~L~~L~l~~n~~~~~ 261 (452)
..+..+..+++|+.|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777777777888888888777643
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=187.26 Aligned_cols=220 Identities=19% Similarity=0.187 Sum_probs=167.5
Q ss_pred eEEeCCCCccccCCc---CCCCCCCCCEEeCCCCcCCCcCChhh--hCCCCCCEEeCCCCcCcccCC----ccccCCCCC
Q 043765 57 SLNISSFNLQGTIPP---QLGNLSSLVTLDLSQNKLSGDIPSSI--FTMHTLKFLYFSDNQLSGSLS----SFTFNMSSM 127 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L 127 (452)
.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 68 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L 147 (310)
T 4glp_A 68 RLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGL 147 (310)
T ss_dssp EEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCC
T ss_pred EEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCC
Confidence 678888776532111 12234679999999999988888887 889999999999999886544 344578999
Q ss_pred CEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCcc--C--CccccCCCCCCEEEccCccccccCCC----CccCCCC
Q 043765 128 LVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGK--I--PSILSKCKQLQQLNLGLNDLSGAIPK----EIGNFTS 199 (452)
Q Consensus 128 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~ 199 (452)
++|++++|.+.+..+..+.. +++|++|++++|.+.+. + +..+..+++|++|++++|.++ .++. .++.+++
T Consensus 148 ~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 148 KVLSIAQAHSPAFSCEQVRA-FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQ 225 (310)
T ss_dssp CEEEEECCSSCCCCTTSCCC-CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCC
T ss_pred CEEEeeCCCcchhhHHHhcc-CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCC
Confidence 99999999998444444444 89999999999987642 2 233468889999999999986 2232 2467789
Q ss_pred ccEEEeecccceecCCcccCCC---CCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEE
Q 043765 200 LQKISLIYNKLHGEIPLEVGNL---RNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYL 276 (452)
Q Consensus 200 L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 276 (452)
|++|++++|.+.+..|..+..+ ++|++|++++|.++.++ ..+. ++|+.|++++|.+++ +|. ...+++|+.|
T Consensus 226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~~~--~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L 299 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP-KGLP--AKLRVLDLSSNRLNR-APQ--PDELPEVDNL 299 (310)
T ss_dssp CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC-SCCC--SCCSCEECCSCCCCS-CCC--TTSCCCCSCE
T ss_pred CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh-hhhc--CCCCEEECCCCcCCC-Cch--hhhCCCccEE
Confidence 9999999999987767777776 69999999999998654 4443 789999999999984 343 2478999999
Q ss_pred ecccccee
Q 043765 277 GLAINRFS 284 (452)
Q Consensus 277 ~l~~n~l~ 284 (452)
++++|.++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 99999886
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.9e-21 Score=178.67 Aligned_cols=210 Identities=17% Similarity=0.274 Sum_probs=175.4
Q ss_pred EEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCc
Q 043765 81 TLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNN 160 (452)
Q Consensus 81 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 160 (452)
.+.+..+.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++. +.. +++|++|++++|
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~-l~~L~~L~L~~n 95 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKN-LTKITELELSGN 95 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTT-CCSCCEEECCSC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-Hcc-CCCCCEEEccCC
Confidence 3445555555432 35568899999999999985 44 6889999999999999998 5665 544 999999999999
Q ss_pred cCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccc
Q 043765 161 MIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLS 240 (452)
Q Consensus 161 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 240 (452)
.+.+ + ..+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++..+
T Consensus 96 ~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 96 PLKN-V-SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp CCSC-C-GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred cCCC-c-hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-
Confidence 9985 3 368999999999999999985 34 389999999999999999854 32 8899999999999999998765
Q ss_pred cccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCccccee
Q 043765 241 TIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGF 310 (452)
Q Consensus 241 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 310 (452)
+..+++|+.|++++|.+.+ ++. ...+++|++|++++|.+++.. .+..+++|+.|++++|.+.+.
T Consensus 169 -l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISD-ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred -hcCCCCCCEEECCCCccCc-Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 8899999999999999984 443 348999999999999999655 389999999999999998753
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.1e-20 Score=178.25 Aligned_cols=205 Identities=16% Similarity=0.120 Sum_probs=146.7
Q ss_pred CEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCE-EEcc
Q 043765 80 VTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKA-LLLN 158 (452)
Q Consensus 80 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~-L~l~ 158 (452)
++++.++++++ .+|..+ .+++++|++++|+|+...+.+|.++++|++|++++|.+.+.+|...+..++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888888 667655 3689999999999987666788999999999999999876788777666787775 5566
Q ss_pred CccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeec-ccceecCCcccCCCC-CCCEEEccCCcccc
Q 043765 159 NNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIY-NKLHGEIPLEVGNLR-NQDTLWLGSNNLVG 236 (452)
Q Consensus 159 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~-~L~~L~l~~~~~~~ 236 (452)
+|++....|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6888877778888888899999988888766555566667777888765 345544444555553 56777777777776
Q ss_pred cccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCC
Q 043765 237 IVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIP 288 (452)
Q Consensus 237 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 288 (452)
+.+..+. ..+|+++++.++...+.+|...+..+++|+.|++++|+++...+
T Consensus 169 i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 169 IHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp ECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred CChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 6555443 34677777765333336666655566777777777777764443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1e-20 Score=178.39 Aligned_cols=240 Identities=16% Similarity=0.150 Sum_probs=163.0
Q ss_pred CEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccc-cccccccCCCCccE-Eecc
Q 043765 177 QQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVG-IVLSTIFNKSAVKE-IDLF 254 (452)
Q Consensus 177 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~-L~l~ 254 (452)
++++.+++.++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|.+.+ +.+.+|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888887 5666552 578888888888885555578888888888888888765 44456777777665 4555
Q ss_pred CCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeC-cccceeCCccccCchhHHHhhcCCCCccc
Q 043765 255 NNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGL-NSFSGFIPNKIGNLRTLQTALSNNPLDGI 333 (452)
Q Consensus 255 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~~~~~~~~~~~ 333 (452)
.|.+. .++...+..+++|++|++++|+++...+..+....++..+++.+ +.+....+..+..
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~---------------- 151 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG---------------- 151 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT----------------
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh----------------
Confidence 67776 55555555788888888888888866666666667777777765 3444443333332
Q ss_pred CCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccC-CcCCcccchhccCCCccceeecccCcccccChhhhc
Q 043765 334 LPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGG-NELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLC 412 (452)
Q Consensus 334 ~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 412 (452)
....++.|++++|+++...+.. ....+|+++++.+ |.++...+..|..+++|+.|++++|+++. +|. .
T Consensus 152 -------~~~~l~~L~L~~N~i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~ 220 (350)
T 4ay9_X 152 -------LSFESVILWLNKNGIQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--Y 220 (350)
T ss_dssp -------SBSSCEEEECCSSCCCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--S
T ss_pred -------cchhhhhhccccccccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--h
Confidence 2225777888888887433333 3456788888864 56665555667788888888888888874 332 2
Q ss_pred CCCCCCEEeCcCCcccccCCccccCCCCCCceeccc
Q 043765 413 RLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLNV 448 (452)
Q Consensus 413 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 448 (452)
.+..|+.|.+.++...+.+| .+..+++|+.++++.
T Consensus 221 ~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 24556677776666666677 367777788777653
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.5e-20 Score=161.37 Aligned_cols=181 Identities=22% Similarity=0.257 Sum_probs=97.3
Q ss_pred CEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccC
Q 043765 80 VTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNN 159 (452)
Q Consensus 80 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 159 (452)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.++ .++..
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~--------------- 70 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNG--------------- 70 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT---------------
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChh---------------
Confidence 45666666655 333322 245666666666666444444555555555555555554 33333
Q ss_pred ccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccccccc
Q 043765 160 NMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVL 239 (452)
Q Consensus 160 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 239 (452)
.|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 71 ---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 71 ---------VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp ---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ---------hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 33444444444444444443333334444555555555555443333344555555555555555555555
Q ss_pred ccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCC
Q 043765 240 STIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASN 296 (452)
Q Consensus 240 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 296 (452)
..+..+++|+.|++++|.+.+ .+++++.|+++.|.++|.+|.+++.++.
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 555666666666666665542 3456777777777777777766665543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.6e-20 Score=161.29 Aligned_cols=180 Identities=24% Similarity=0.249 Sum_probs=147.4
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+++++++++. +|..+ .+++++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.
T Consensus 11 ~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 68889988875 44433 4689999999999997777778999999999999999997777788999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 88 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred CC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 98 6666554448999999999999987666678889999999999999986666668888999999999886653
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCC
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLSTIFNKSA 247 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 247 (452)
.++.++.|+++.|.+++..|..++.++.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3557778888888888877776665543
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.8e-19 Score=156.82 Aligned_cols=151 Identities=23% Similarity=0.263 Sum_probs=127.7
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+++++++++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|++.+..|..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 68899998875 555443 689999999999997777789999999999999999998888899999999999999999
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccce
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLH 211 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 211 (452)
++ .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 92 l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 98 777776666889999999999988777788888888888888888888766667888888888888888765
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.1e-19 Score=178.32 Aligned_cols=184 Identities=25% Similarity=0.268 Sum_probs=113.8
Q ss_pred CCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEc
Q 043765 78 SLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLL 157 (452)
Q Consensus 78 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 157 (452)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +. .+|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP---ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh---cCCCEEEC
Confidence 78888888888775 55544 267888888888777 444 346777777777777773 666 32 27777777
Q ss_pred cCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccccc
Q 043765 158 NNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGI 237 (452)
Q Consensus 158 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 237 (452)
++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++.+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence 7777764 444 46777777777777764 444 45677777777777664 554 44 6677777777766644
Q ss_pred ccccccCCCCc-------cEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccc
Q 043765 238 VLSTIFNKSAV-------KEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFI 291 (452)
Q Consensus 238 ~~~~l~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 291 (452)
+. +.. +| +.|++++|.++ .+|..++ .+++|+.|++++|.+++..|..+
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSCCHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcCCCcCHHHH
Confidence 33 332 44 55555555555 4555444 35555555555555555444443
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.1e-18 Score=154.06 Aligned_cols=150 Identities=23% Similarity=0.327 Sum_probs=116.7
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+++++++++. +|..+. ++|++|++++|.+++..+..|..+++|++|++++|++....+..|.++++|++|++++|.
T Consensus 23 ~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 78999988874 555443 789999999999998888888999999999999999886666677888888888888888
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccce
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLH 211 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 211 (452)
++ .++...+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 100 l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 87 555555444788888888888877 56777777778888888888777555556777777777777777665
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=6.9e-19 Score=174.65 Aligned_cols=183 Identities=25% Similarity=0.332 Sum_probs=145.2
Q ss_pred eeEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 043765 56 FSLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (452)
..|++++|++++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|++++|
T Consensus 62 ~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 62 SELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp SEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 379999999987 66655 378999999999988 566 457899999999999986 555 555 8999999999
Q ss_pred CCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCC
Q 043765 136 RFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIP 215 (452)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 215 (452)
.++ .+|. . +++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|
T Consensus 131 ~l~-~lp~---~-l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 131 QLT-MLPE---L-PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp CCS-CCCC---C-CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred cCC-CCCC---c-CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 998 4777 2 8899999999999885 555 56889999999999885 666 65 88999999999988 666
Q ss_pred cccCCCCCC-------CEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhh
Q 043765 216 LEVGNLRNQ-------DTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTD 267 (452)
Q Consensus 216 ~~~~~l~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 267 (452)
. +.. +| +.|++++|.++.++ ..+..+++|+.|++++|.+++.+|..+.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp C-CC----------CCEEEECCSSCCCCCC-GGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcceecC-HHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 6 544 66 99999999998754 4556689999999999999877766544
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=3.8e-19 Score=162.99 Aligned_cols=170 Identities=24% Similarity=0.291 Sum_probs=83.4
Q ss_pred CCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCE
Q 043765 75 NLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKA 154 (452)
Q Consensus 75 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 154 (452)
.+++|++|++++|.+.+. + .+..+++|++|++++|++.+..+ +.++++|++|++++|.++ .++. +.. +++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKD-LKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GTT-CTTCCE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hcc-CCCCCE
Confidence 455666666666666532 2 35556666666666666654332 555555555555555554 2322 222 555555
Q ss_pred EEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcc
Q 043765 155 LLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNL 234 (452)
Q Consensus 155 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 234 (452)
|++++|.+.+. ..+..+++|++|++++|.+++. ..+..++ +|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~------------------------~L~~L~L~~N~l 168 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT------------------------KLDTLSLEDNQI 168 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCT------------------------TCSEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCC------------------------CCCEEEccCCcc
Confidence 55555555422 2344445555555555544422 2334444 444444444444
Q ss_pred cccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEecccccee
Q 043765 235 VGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFS 284 (452)
Q Consensus 235 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 284 (452)
.+..+ +..+++|+.|++++|.+++ ++. ...+++|+.|++++|.++
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~~--l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LRA--LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CGG--GTTCTTCSEEEEEEEEEE
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Chh--hccCCCCCEEECcCCccc
Confidence 44332 4444445555555554442 221 224555555555555554
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=151.78 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=123.6
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCC-hhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIP-SSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (452)
.++++++.++. +|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 68999999875 565553 467899999999987644 45788999999999999998877778889999999999999
Q ss_pred CCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeeccccee
Q 043765 136 RFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHG 212 (452)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 212 (452)
.++ .++...+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|..+++|++|++++|.+..
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 988 4555444448888999998888887778888888888888888888887777888888888888888887763
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=2.3e-18 Score=150.96 Aligned_cols=151 Identities=23% Similarity=0.242 Sum_probs=86.6
Q ss_pred CEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccC
Q 043765 80 VTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNN 159 (452)
Q Consensus 80 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 159 (452)
+.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCC
Confidence 56777777776 4554443 57777777777777665556666666666666666666333444433 56666666666
Q ss_pred ccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcc
Q 043765 160 NMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNL 234 (452)
Q Consensus 160 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 234 (452)
|.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+++++++|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666544334455555566666655555544455555555555555555555543333444444444444444444
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=8e-19 Score=166.14 Aligned_cols=152 Identities=22% Similarity=0.219 Sum_probs=77.8
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhh-cCCCCCEEEccCccCCccCCccccCCCCCCEEEcc
Q 043765 104 KFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICN-YLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLG 182 (452)
Q Consensus 104 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 182 (452)
+.++++++.++. +|..+. ..+++|++++|.++ .++...+. .+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 466676666663 333322 23555666666555 33333322 35555555555555554444455555555555555
Q ss_pred CccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccc---cCCCCccEEeccCCcCc
Q 043765 183 LNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTI---FNKSAVKEIDLFNNSLS 259 (452)
Q Consensus 183 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~ 259 (452)
+|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+ ..+++|+.|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 555554444445555555555555555554444455555555555555555554444333 23444444444444444
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.6e-18 Score=158.79 Aligned_cols=151 Identities=25% Similarity=0.351 Sum_probs=104.5
Q ss_pred CCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEE
Q 043765 149 LPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLW 228 (452)
Q Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 228 (452)
+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ + ..+..+++|++|+
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY 140 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEE
Confidence 4555555555555543222 4555555555555555542 22 25556666666666666553 2 3566677777788
Q ss_pred ccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccc
Q 043765 229 LGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 229 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
+++|.+++. ..+..+++|+.|++++|.+.+..+ ...+++|+.|++++|.+++. + .+..+++|+.|++++|.+.
T Consensus 141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ccCCcCCcc--hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 877777766 467889999999999999985433 44899999999999999864 4 4899999999999999987
Q ss_pred eeCC
Q 043765 309 GFIP 312 (452)
Q Consensus 309 ~~~~ 312 (452)
....
T Consensus 214 ~~~~ 217 (291)
T 1h6t_A 214 NKPI 217 (291)
T ss_dssp CCCE
T ss_pred CCcc
Confidence 6433
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=150.08 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=70.6
Q ss_pred CEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCC-ccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEcc
Q 043765 80 VTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLS-SFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLN 158 (452)
Q Consensus 80 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 158 (452)
+++++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------- 70 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence 45666666655 3443332 234555666555554322 23444444444444444444
Q ss_pred CccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccc
Q 043765 159 NNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIV 238 (452)
Q Consensus 159 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 238 (452)
+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..
T Consensus 71 -----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 71 -----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp -----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred -----EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 333334444444444444444444333333444444444444444444333444444444444444444444444
Q ss_pred cccccCCCCccEEeccCCcCc
Q 043765 239 LSTIFNKSAVKEIDLFNNSLS 259 (452)
Q Consensus 239 ~~~l~~~~~L~~L~l~~n~~~ 259 (452)
+..+..+++|+.|++++|++.
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEE
T ss_pred HHHhcCCCCCCEEEecCcCCc
Confidence 444444455555555555443
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=165.27 Aligned_cols=151 Identities=30% Similarity=0.276 Sum_probs=99.6
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhh-CCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIF-TMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (452)
.+++++++++. +|..+. +.++.|++++|++++..+..+. ++++|++|++++|++.+..+..|.++++|++|++++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 67888888775 554443 4578888888888766666666 7788888888888887666667777777777777777
Q ss_pred CCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCc---cCCCCccEEEeecccce
Q 043765 136 RFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEI---GNFTSLQKISLIYNKLH 211 (452)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~~~ 211 (452)
.++ .++...+..+++|++|++++|.+....+..|..+++|++|++++|.++...+..| ..+++|+.|++++|.+.
T Consensus 99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 776 4444444446777777777777766556666666777777777776663322223 34555555555555554
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.8e-18 Score=149.43 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=104.8
Q ss_pred CCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEcc
Q 043765 79 LVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLN 158 (452)
Q Consensus 79 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 158 (452)
-+.++.+++.++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+. .+|...+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 467888888877 4555443 78888888888888777777888888888888888876 6665554447777777777
Q ss_pred CccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccc
Q 043765 159 NNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLV 235 (452)
Q Consensus 159 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~ 235 (452)
+|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77777555555667777777777777776 55666666666666666666666444444555555666666555554
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2.1e-18 Score=172.99 Aligned_cols=169 Identities=25% Similarity=0.403 Sum_probs=111.0
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+.+ + ..+..+++|++|++++|.
T Consensus 47 ~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 47 QIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp CCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSC
T ss_pred EEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCC
Confidence 566777776643 2 36667777777777777765433 6677777777777777764 2 256677777777777777
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPL 216 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 216 (452)
+. .++ .+.. +++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.+ + .
T Consensus 121 l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~ 191 (605)
T 1m9s_A 121 IS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-R 191 (605)
T ss_dssp CC-CCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-G
T ss_pred CC-CCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-h
Confidence 76 333 3444 67777777777777643 456677777777777777764444 6677777777777777664 2 3
Q ss_pred ccCCCCCCCEEEccCCcccccccc
Q 043765 217 EVGNLRNQDTLWLGSNNLVGIVLS 240 (452)
Q Consensus 217 ~~~~l~~L~~L~l~~~~~~~~~~~ 240 (452)
.+..+++|+.|++++|.+.+.+..
T Consensus 192 ~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp GGTTCTTCSEEECCSEEEECCCCC
T ss_pred HHccCCCCCEEEccCCcCcCCccc
Confidence 566677777777777777655433
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=4.7e-19 Score=165.59 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=74.0
Q ss_pred CCCCCEEeCCCCcCCCcCChhhhC-CCCCCEEeCCCCcCc--ccCCccccCCCCCCEEECcCCCCcccCchHHhhc----
Q 043765 76 LSSLVTLDLSQNKLSGDIPSSIFT-MHTLKFLYFSDNQLS--GSLSSFTFNMSSMLVSDLSTNRFSGELPETICNY---- 148 (452)
Q Consensus 76 l~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---- 148 (452)
+.++++|.++++ +.......+.. +++|++|||++|++. ......+ +.++.+.+..+ .+|+..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc----ccCHHHhcccccc
Confidence 567888888764 22111223444 778888888888876 2222222 22344444444 455566665
Q ss_pred ----CCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeec
Q 043765 149 ----LPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIY 207 (452)
Q Consensus 149 ----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 207 (452)
+++|+.+++.+ .++...+.+|.+|++|+.+++.+|.+....+..|..+.++..+....
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 77777777777 66655556777777777777777777656666666655555554433
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=9.2e-18 Score=168.39 Aligned_cols=171 Identities=23% Similarity=0.299 Sum_probs=83.7
Q ss_pred CCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCE
Q 043765 99 TMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQ 178 (452)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 178 (452)
.+++|+.|++++|.+... + .+..+++|+.|+|++|.+. .++. +.. +++|++|++++|.+.+ ++ .+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LTN-LKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG-GGG-CTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh-hcc-CCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 344444444444444421 1 2444444444444444444 2222 222 5555555555555542 22 3455555555
Q ss_pred EEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcC
Q 043765 179 LNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSL 258 (452)
Q Consensus 179 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 258 (452)
|++++|.+.+ + +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 5555555542 2 2345555555555555555432 345555555555555555555444 55555555555555555
Q ss_pred cccCChhhhcCCCCCcEEeccccceee
Q 043765 259 SGNLPSRTDLALPNIDYLGLAINRFSG 285 (452)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~l~~n~l~~ 285 (452)
.+ ++ . ...+++|+.|++++|.+.+
T Consensus 188 ~~-l~-~-l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 188 SD-LR-A-LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CB-CG-G-GTTCTTCSEEECCSEEEEC
T ss_pred CC-Ch-H-HccCCCCCEEEccCCcCcC
Confidence 42 22 1 2245556666666555554
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=5.6e-18 Score=145.95 Aligned_cols=110 Identities=14% Similarity=0.195 Sum_probs=44.6
Q ss_pred ccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCc-ccccccccccCCCCc
Q 043765 170 LSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNN-LVGIVLSTIFNKSAV 248 (452)
Q Consensus 170 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L 248 (452)
+..+++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|. +.... .+..+++|
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L 161 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPEL 161 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSC
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCC
Confidence 3334444444444444433333334444444444444444443333334444444444444443 22221 24444444
Q ss_pred cEEeccCCcCcccCChhhhcCCCCCcEEecccccee
Q 043765 249 KEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFS 284 (452)
Q Consensus 249 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 284 (452)
+.|++++|.+.+ ++ . ...+++|+.|++++|++.
T Consensus 162 ~~L~l~~n~i~~-~~-~-l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 162 KSLNIQFDGVHD-YR-G-IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CEEECTTBCCCC-CT-T-GGGCSSCCEEEECBC---
T ss_pred CEEECCCCCCcC-hH-H-hccCCCCCEEEeeCcccC
Confidence 444444444442 22 1 124455555555555443
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3.6e-17 Score=140.84 Aligned_cols=146 Identities=15% Similarity=0.251 Sum_probs=90.3
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+++++|+++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 48 ~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 48 YITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp EEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred EEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 5677777666 334 46666777777777775542 2356667777777777777666566666667777777777777
Q ss_pred CcccCchHHhhcCCCCCEEEccCcc-CCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccce
Q 043765 137 FSGELPETICNYLPNLKALLLNNNM-IHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLH 211 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 211 (452)
+++..+..+.. +++|++|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++.
T Consensus 124 i~~~~~~~l~~-l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 124 HDDSILTKINT-LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CBGGGHHHHTT-CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred cCcHhHHHHhh-CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 66545555554 6667777777666 43 333 46666666666666666653 33 4566666666666666554
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=6.1e-18 Score=158.01 Aligned_cols=222 Identities=10% Similarity=0.041 Sum_probs=134.9
Q ss_pred CCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcC---cccCChhhhcCCCCC
Q 043765 197 FTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSL---SGNLPSRTDLALPNI 273 (452)
Q Consensus 197 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~---~~~~~~~~~~~~~~L 273 (452)
+++|+.+++.. .++......|.++++|+.+++.+|.+..+.+.+|.++.++..+....... ...+....+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666665 45444445566666666666666666666666666665555555443211 012223333344555
Q ss_pred c-EEeccccc-eeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecc
Q 043765 274 D-YLGLAINR-FSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIF 351 (452)
Q Consensus 274 ~-~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~ 351 (452)
+ .+.+.... +.......-....+++.+.+.++-... ....+. ..+. +|+.++++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-------~~~~l~----------------~~~~-~L~~l~L~ 234 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNA-------DFKLIR----------------DYMP-NLVSLDIS 234 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHH-------HHHHHH----------------HHCT-TCCEEECT
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHH-------HHHHHH----------------HhcC-CCeEEECC
Confidence 4 33332211 100000011124455666665442110 000010 0122 88888888
Q ss_pred cccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccc-eeecccCcccccChhhhcCCCCCCEEeCcCCccccc
Q 043765 352 NCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQ-GLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSES 430 (452)
Q Consensus 352 ~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 430 (452)
+|+++...+.+|.+|++|+++++.+| ++.....+|.+|++|+ .+++.+ .++..-+..|.+|++|+.+++++|.+...
T Consensus 235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp TBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred CCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 88888666778888889999999887 7777778888888898 888888 67766667888999999999888888665
Q ss_pred CCccccCCCCCCcee
Q 043765 431 IPTCLGNLTSLEGSL 445 (452)
Q Consensus 431 ~~~~~~~~~~L~~L~ 445 (452)
-+.+|.+|++|+.++
T Consensus 313 ~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 313 GDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTTTCTTCCCCEEE
T ss_pred chhhhcCCcchhhhc
Confidence 566888888888764
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.2e-17 Score=150.63 Aligned_cols=164 Identities=19% Similarity=0.233 Sum_probs=89.3
Q ss_pred EEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCC
Q 043765 58 LNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRF 137 (452)
Q Consensus 58 l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 137 (452)
++++++.+++.. .+..+++|++|++++|+++. ++ .+..+++|++|++++|++++..+ +.++++|++|++++|.+
T Consensus 24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence 445555554332 34556666666666666653 33 45666666666666666664333 55666666666666666
Q ss_pred cccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcc
Q 043765 138 SGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLE 217 (452)
Q Consensus 138 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 217 (452)
+ .+|... .++|++|++++|.+++. ..+..+++|++|++++|.+++. + .++.+++|++|++++|.+.+. ..
T Consensus 98 ~-~l~~~~---~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 98 K-NLNGIP---SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp S-CCTTCC---CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred C-CcCccc---cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH
Confidence 5 333321 15566666666665532 2355556666666666655532 2 355555555555555555533 34
Q ss_pred cCCCCCCCEEEccCCccccc
Q 043765 218 VGNLRNQDTLWLGSNNLVGI 237 (452)
Q Consensus 218 ~~~l~~L~~L~l~~~~~~~~ 237 (452)
+..+++|+.|++++|.+...
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 55555555555555555443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.4e-19 Score=180.58 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=77.6
Q ss_pred CCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEecc
Q 043765 175 QLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLF 254 (452)
Q Consensus 175 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 254 (452)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++++ .+.++++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence 36667777776663 454 666667777777777666 56666666777777777777766642 56667777777777
Q ss_pred CCcCcccC-ChhhhcCCCCCcEEeccccceeecCCc---cccCCCCCcEEEe
Q 043765 255 NNSLSGNL-PSRTDLALPNIDYLGLAINRFSGTIPS---FITNASNLTILEM 302 (452)
Q Consensus 255 ~n~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~L~L 302 (452)
+|.+++.. |..+. .+++|+.|++++|.+++.++. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHh-cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77766443 54444 667777777777777654432 1234677777653
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.7e-17 Score=148.26 Aligned_cols=167 Identities=19% Similarity=0.232 Sum_probs=72.4
Q ss_pred CCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEE
Q 043765 77 SSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALL 156 (452)
Q Consensus 77 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 156 (452)
.+++.++++++.+++. + .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++.
T Consensus 19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~------------- 80 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP------------- 80 (263)
T ss_dssp HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-------------
T ss_pred HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-------------
Confidence 3444455555555422 2 34455555555555555542 22 3344444444444444444 2222
Q ss_pred ccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccc
Q 043765 157 LNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVG 236 (452)
Q Consensus 157 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 236 (452)
+..+++|++|++++|.+++ ++.. .. ++|++|++++|.+++ + ..+..+++|++|++++|.+++
T Consensus 81 -------------l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 81 -------------LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp -------------GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB
T ss_pred -------------hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC
Confidence 4444444444444444432 2211 11 444444444444442 1 234444445555555544444
Q ss_pred cccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEecccccee
Q 043765 237 IVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFS 284 (452)
Q Consensus 237 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 284 (452)
.. .+..+++|+.|++++|.+.+. . ....+++|+.|++++|.++
T Consensus 143 ~~--~l~~l~~L~~L~L~~N~i~~~--~-~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 143 IV--MLGFLSKLEVLDLHGNEITNT--G-GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CG--GGGGCTTCCEEECTTSCCCBC--T-TSTTCCCCCEEEEEEEEEE
T ss_pred Ch--HHccCCCCCEEECCCCcCcch--H-HhccCCCCCEEeCCCCccc
Confidence 32 344444555555555544422 1 1124444555555555444
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=2.1e-15 Score=143.96 Aligned_cols=238 Identities=11% Similarity=0.076 Sum_probs=177.2
Q ss_pred cccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHH
Q 043765 66 QGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETI 145 (452)
Q Consensus 66 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 145 (452)
+..-..+|..+ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+....+.+|.+|.+|+.+++..|.++ .++...
T Consensus 125 ~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~a 199 (401)
T 4fdw_A 125 KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPAST 199 (401)
T ss_dssp CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTT
T ss_pred CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-Eechhh
Confidence 33344567664 7888888766 665566677774 688888875 666667778888999999999888887 788888
Q ss_pred hhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCC
Q 043765 146 CNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQD 225 (452)
Q Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 225 (452)
+. +.+|+.+.+..+ +......+|.++++|+.+++..+ +......+|.. .+|+.+.+.. .+.......|.++++|+
T Consensus 200 F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~ 274 (401)
T 4fdw_A 200 FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELA 274 (401)
T ss_dssp TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCC
T ss_pred Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCC
Confidence 77 688998888754 66566678888889999988875 44455566766 7888888844 45545567788888999
Q ss_pred EEEccCCccc-----ccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEE
Q 043765 226 TLWLGSNNLV-----GIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTIL 300 (452)
Q Consensus 226 ~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 300 (452)
.+.+.++.+. .+...+|.++++|+.+.+.+ .+. .++...|..+.+|+.+++..+ ++.+...+|.+| +|+.+
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred EEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 9988877665 56677888888899888884 455 677777778888998888554 666677788888 89999
Q ss_pred EeeCcccceeCCccccC
Q 043765 301 EMGLNSFSGFIPNKIGN 317 (452)
Q Consensus 301 ~L~~n~l~~~~~~~l~~ 317 (452)
++.+|.........+.+
T Consensus 351 ~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 351 KVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp EECCSSCCBCCCSSCCC
T ss_pred EEcCCCCcccccccccC
Confidence 98888765544444443
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=2.7e-15 Score=143.63 Aligned_cols=334 Identities=10% Similarity=0.018 Sum_probs=194.3
Q ss_pred ccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchH
Q 043765 65 LQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPET 144 (452)
Q Consensus 65 ~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 144 (452)
++..-..+|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ +......+|.++.+|+.+.+..+ +. .+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence 34445556777777777777643 55455567777777777777644 44455566777777776655543 22 33334
Q ss_pred HhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCC
Q 043765 145 ICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQ 224 (452)
Q Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 224 (452)
.+..+.. ....+.. ........+|.++.+|+.+.+..+... .....|..+++|+.+++..+ +.......|.++..|
T Consensus 135 aF~~~~~-~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDF-KEITIPE-GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCC-SEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccc-cccccCc-cccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 4432332 2222222 112233345666677777766554322 44455666666666666544 222334455566666
Q ss_pred CEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeC
Q 043765 225 DTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGL 304 (452)
Q Consensus 225 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~ 304 (452)
+.+.+..+... . .+.......|+.+.+.... . .+....+..+..++.+.+..+... ....+|..++.++.+....
T Consensus 211 ~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 211 ENMEFPNSLYY-L-GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CBCCCCTTCCE-E-CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred ceeecCCCceE-e-ehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 65555443221 1 1122233455555554321 1 333344445556666665544332 3444555666666555543
Q ss_pred cccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccc
Q 043765 305 NSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVL 384 (452)
Q Consensus 305 n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 384 (452)
+.+. . ..+..+. +|+.+.+..+ +...-..+|.+|++|+.+++..+ ++....
T Consensus 286 ~~i~---~-----------------------~~F~~~~-~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 336 (394)
T 4fs7_A 286 VIVP---E-----------------------KTFYGCS-SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK 336 (394)
T ss_dssp SEEC---T-----------------------TTTTTCT-TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred eeec---c-----------------------ccccccc-cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence 3211 1 1223333 7888888654 55456677889999999999644 666677
Q ss_pred hhccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCCc
Q 043765 385 VTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEG 443 (452)
Q Consensus 385 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 443 (452)
.+|.+|.+|+.+.+..+ ++..-..+|.+|++|+.+++..+- ..+..+|.+|++|+.
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~--~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL--EQYRYDFEDTTKFKW 392 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG--GGGGGGBCTTCEEEE
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC--EEhhheecCCCCCcE
Confidence 88999999999999776 665556789999999999997652 234567888988876
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=5.8e-18 Score=174.02 Aligned_cols=181 Identities=22% Similarity=0.288 Sum_probs=90.5
Q ss_pred cCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCcc
Q 043765 116 SLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIG 195 (452)
Q Consensus 116 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 195 (452)
..+..+..+.+|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 34555666666777777776666 66666665 677777777777766 56666667777777777777766 5566667
Q ss_pred CCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCC-ccEEeccCCcCcccCChhhhcCCCCCc
Q 043765 196 NFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSA-VKEIDLFNNSLSGNLPSRTDLALPNID 274 (452)
Q Consensus 196 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~L~ 274 (452)
.+++|++|++++|.+. .+|..|+.+++|++|++++|.+.+..+..+..... ...+++++|.+.+.+|. .++
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~ 362 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERR 362 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C--
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccc
Confidence 7777777777777665 55666777777777777777776666655543221 12355666666554443 344
Q ss_pred EEecccc--------ceeecCCccccCCCCCcEEEeeCcccc
Q 043765 275 YLGLAIN--------RFSGTIPSFITNASNLTILEMGLNSFS 308 (452)
Q Consensus 275 ~L~l~~n--------~l~~~~~~~l~~~~~L~~L~L~~n~l~ 308 (452)
.|+++.| .+.+..+..+..+..++...+++|.+.
T Consensus 363 ~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 363 FIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------------------------CCC
T ss_pred eeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 4445444 233333334445555555666666553
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.4e-19 Score=180.57 Aligned_cols=122 Identities=24% Similarity=0.304 Sum_probs=96.8
Q ss_pred CCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEcc
Q 043765 296 NLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLG 375 (452)
Q Consensus 296 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~ 375 (452)
.|+.|++++|.+.+ +|. + ..+. +|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~-----------------------~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-L-----------------------EQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQAS 494 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-G-----------------------GGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-c-----------------------cccc-cCcEeecCccccc-ccchhhhcCCCCCEEECC
Confidence 47788888887764 222 2 2333 8889999999888 788888899999999999
Q ss_pred CCcCCcccchhccCCCccceeecccCcccccC-hhhhcCCCCCCEEeCcCCcccccCCc---cccCCCCCCceec
Q 043765 376 GNELTGPVLVTFDRLQNLQGLFLSSNKLAGSI-PDDLCRLHRLDTLILDGNEFSESIPT---CLGNLTSLEGSLL 446 (452)
Q Consensus 376 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~l 446 (452)
+|.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|++.+..|. .+..+++|+.||+
T Consensus 495 ~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 495 DNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999987 45 7888999999999999999776 88999999999999999999775442 3345788888764
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.6e-16 Score=133.04 Aligned_cols=133 Identities=22% Similarity=0.173 Sum_probs=97.0
Q ss_pred CCCCCEEeCCCCcCC-CcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCE
Q 043765 76 LSSLVTLDLSQNKLS-GDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKA 154 (452)
Q Consensus 76 l~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 154 (452)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCE
Confidence 367788888888776 56676677778888888888887754 66777888888888888887556655555 788888
Q ss_pred EEccCccCCccC-CccccCCCCCCEEEccCccccccCC---CCccCCCCccEEEeecccce
Q 043765 155 LLLNNNMIHGKI-PSILSKCKQLQQLNLGLNDLSGAIP---KEIGNFTSLQKISLIYNKLH 211 (452)
Q Consensus 155 L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~ 211 (452)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888888877432 2567778888888888888774433 35677777777777777765
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=7.5e-15 Score=140.07 Aligned_cols=264 Identities=13% Similarity=0.097 Sum_probs=157.8
Q ss_pred CCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEE
Q 043765 125 SSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKIS 204 (452)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 204 (452)
..++.+.+..+ ++ .++...|..+ +|+.+.+.++ ++.....+|.++ +|+.+.+.. .+....+..|..+++|+.++
T Consensus 113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 44455554432 22 3444444422 5666665544 443444455553 466666654 34434445566666666666
Q ss_pred eecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEecccccee
Q 043765 205 LIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFS 284 (452)
Q Consensus 205 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 284 (452)
+..|.++......|. ...|+.+.+.. .++.+...+|.++++|+.+++..+ +. .++...|.. .+|+.+.+ .+.++
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL-PNGVT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEE-ETTCC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEe-CCCcc
Confidence 666655533333343 46666666653 355566666777777777777653 33 555555534 67777777 34455
Q ss_pred ecCCccccCCCCCcEEEeeCcccc-----eeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccC
Q 043765 285 GTIPSFITNASNLTILEMGLNSFS-----GFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNI 359 (452)
Q Consensus 285 ~~~~~~l~~~~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~ 359 (452)
.+...+|.+|++|+.+++.++.+. ...+.+ |..+. +|+.+.+.+ .+...-
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a-----------------------F~~c~-~L~~l~l~~-~i~~I~ 315 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC-----------------------LEGCP-KLARFEIPE-SIRILG 315 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT-----------------------TTTCT-TCCEECCCT-TCCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHH-----------------------hhCCc-cCCeEEeCC-ceEEEh
Confidence 566667888888888888776553 122222 33333 677777763 455455
Q ss_pred cccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccChhhhcCCC-CCCEEeCcCCcc
Q 043765 360 PQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLH-RLDTLILDGNEF 427 (452)
Q Consensus 360 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~~ 427 (452)
..+|.+|++|+.+.|..+ ++.....+|.+| +|+.+.+.+|.+....+..|.+++ .++.|.+..+.+
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 667778888888888544 666666778778 888888888877655556677764 677777776654
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=2.4e-16 Score=134.96 Aligned_cols=111 Identities=22% Similarity=0.274 Sum_probs=57.2
Q ss_pred CCCEEEccCccCCccCCc-cccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEc
Q 043765 151 NLKALLLNNNMIHGKIPS-ILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWL 229 (452)
Q Consensus 151 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 229 (452)
++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444555555544433322 2444555555555555555444445555555555555555555444444555555555555
Q ss_pred cCCcccccccccccCCCCccEEeccCCcCccc
Q 043765 230 GSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGN 261 (452)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 261 (452)
++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 55555555555555555555666665555543
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=5.7e-18 Score=174.09 Aligned_cols=177 Identities=21% Similarity=0.217 Sum_probs=108.2
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEe-----CCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLD-----LSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSD 131 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~-----ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 131 (452)
.++|.++++... +..+.....|+.+. ++.|.+. ..+..+..+++|+.|+|++|.+. .+|..+.++++|++|+
T Consensus 177 ~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 177 KIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLY 253 (727)
T ss_dssp -----------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCB
T ss_pred eEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEE
Confidence 677777777653 33332333333322 3333333 45677888888999999988887 5666666888899999
Q ss_pred CcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccce
Q 043765 132 LSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLH 211 (452)
Q Consensus 132 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 211 (452)
|++|.++ .+|..+.. +++|++|+|++|.++ .+|..|..+++|++|++++|.++ .+|..|+.+++|++|++++|.+.
T Consensus 254 Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 254 LNGNSLT-ELPAEIKN-LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CTTSCCS-CCCGGGGG-GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred eeCCcCc-ccChhhhC-CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 9999888 88887766 888999999998888 67888888888999999988887 67777888889999999988888
Q ss_pred ecCCcccCCCCC-CCEEEccCCcccccccc
Q 043765 212 GEIPLEVGNLRN-QDTLWLGSNNLVGIVLS 240 (452)
Q Consensus 212 ~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~ 240 (452)
+.+|..+..+.. ...+++++|.+.+..|.
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 777666544321 12356667777665554
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=5.4e-16 Score=132.80 Aligned_cols=127 Identities=23% Similarity=0.231 Sum_probs=71.2
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCCh-hhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPS-SIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (452)
.+++++++++ .+|..+.. ++++|++++|.+++..+. .|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777764 34544432 667777777766654443 3666666666666666666555556666666666666666
Q ss_pred CCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCcccc
Q 043765 136 RFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLS 187 (452)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 187 (452)
.+++..+..+.. +++|++|++++|.+++..|..|..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTT-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcC-CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555322222222 555555555555555444555555555555555555544
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2e-16 Score=129.64 Aligned_cols=127 Identities=22% Similarity=0.209 Sum_probs=75.4
Q ss_pred CCCCEEeCCCCcCC-CcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEE
Q 043765 77 SSLVTLDLSQNKLS-GDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKAL 155 (452)
Q Consensus 77 ~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 155 (452)
+++++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+.++++|++|++++|.+++.+|..+.. +++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCEE
Confidence 45666666666665 45555556666666666666666544 45566666666666666666445554444 6667777
Q ss_pred EccCccCCcc-CCccccCCCCCCEEEccCccccccCC---CCccCCCCccEEEee
Q 043765 156 LLNNNMIHGK-IPSILSKCKQLQQLNLGLNDLSGAIP---KEIGNFTSLQKISLI 206 (452)
Q Consensus 156 ~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~ 206 (452)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7766666542 22556666666666666666654333 245556666666553
No 130
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1.5e-14 Score=138.40 Aligned_cols=316 Identities=9% Similarity=-0.030 Sum_probs=225.1
Q ss_pred CCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCc
Q 043765 89 LSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPS 168 (452)
Q Consensus 89 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (452)
++.....+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++ .++...+.++.+|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecce
Confidence 45455678999999999999754 77677788999999999999765 44 677777777889988877654 4434556
Q ss_pred cccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccCCCCc
Q 043765 169 ILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAV 248 (452)
Q Consensus 169 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 248 (452)
+|.++..++....... ......+|..+++|+.+.+..+... .....|.++.+|+.+.+..+ ++.+...++.++..|
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCccc--cccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 7777655444433332 2234467888999999999765432 45567888899999988765 666667788888889
Q ss_pred cEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCC
Q 043765 249 KEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNN 328 (452)
Q Consensus 249 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~ 328 (452)
+.+.+..+.. .+....+ ...+|+.+.+... ++.....+|.++..++.+.+..+... .....+..+.
T Consensus 211 ~~i~~~~~~~--~i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~--------- 276 (394)
T 4fs7_A 211 ENMEFPNSLY--YLGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS--------- 276 (394)
T ss_dssp CBCCCCTTCC--EECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT---------
T ss_pred ceeecCCCce--Eeehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccc---------
Confidence 8888776543 2333333 5678888887643 33355567888999999988766432 3333333322
Q ss_pred CCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcccccCh
Q 043765 329 PLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLAGSIP 408 (452)
Q Consensus 329 ~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 408 (452)
.++.+...... .....|..+++|+.+.+..+ +......+|.+|++|+.+++..+ ++..-.
T Consensus 277 ---------------~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 336 (394)
T 4fs7_A 277 ---------------GLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK 336 (394)
T ss_dssp ---------------TCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred ---------------ccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence 55555555432 23346788999999999765 66667788999999999999754 665556
Q ss_pred hhhcCCCCCCEEeCcCCcccccCCccccCCCCCCceecc
Q 043765 409 DDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447 (452)
Q Consensus 409 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 447 (452)
.+|.+|++|+.+.+..+ +...-..+|.+|++|+.+++.
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 78999999999999877 433335689999999998874
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=9.5e-16 Score=125.60 Aligned_cols=124 Identities=23% Similarity=0.203 Sum_probs=109.2
Q ss_pred eEEeCCCCcc-ccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 043765 57 SLNISSFNLQ-GTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTN 135 (452)
Q Consensus 57 ~l~l~~~~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (452)
.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 7999999998 78898899999999999999999865 77899999999999999999878888888999999999999
Q ss_pred CCccc-CchHHhhcCCCCCEEEccCccCCccCC---ccccCCCCCCEEEccC
Q 043765 136 RFSGE-LPETICNYLPNLKALLLNNNMIHGKIP---SILSKCKQLQQLNLGL 183 (452)
Q Consensus 136 ~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~ 183 (452)
.+++. .+..+.. +++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 99 ~i~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 99 KIKDLSTIEPLKK-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCCSHHHHGGGGG-CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCChHHHHHHhh-CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99842 2255555 9999999999999986655 4788999999998863
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=5.1e-15 Score=126.70 Aligned_cols=126 Identities=24% Similarity=0.300 Sum_probs=83.3
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+++++++++. +|..+. +++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57888888774 454442 57888888888877 566777788888888888888776666667777777777777777
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCcccc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLS 187 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 187 (452)
++ .++...+..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 90 l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 76 333333333666666666666666444445556666666666666553
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=2.1e-15 Score=126.20 Aligned_cols=133 Identities=24% Similarity=0.315 Sum_probs=78.5
Q ss_pred CCCCCEEEccCccCC-ccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEE
Q 043765 149 LPNLKALLLNNNMIH-GKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTL 227 (452)
Q Consensus 149 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 227 (452)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 355666666666665 44555566666666666666666533 456666666666666666665455555556666666
Q ss_pred EccCCccccccc-ccccCCCCccEEeccCCcCcccCCh---hhhcCCCCCcEEecccccee
Q 043765 228 WLGSNNLVGIVL-STIFNKSAVKEIDLFNNSLSGNLPS---RTDLALPNIDYLGLAINRFS 284 (452)
Q Consensus 228 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~l~ 284 (452)
++++|.+++... ..+..+++|+.|++++|.+.+ ++. ..+..+++|++|+++.|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666665432 455566666666666666652 222 23335556666666555554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=5.4e-15 Score=126.52 Aligned_cols=107 Identities=25% Similarity=0.334 Sum_probs=50.0
Q ss_pred CCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEcc
Q 043765 151 NLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLG 230 (452)
Q Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 230 (452)
+|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4444444444444 333444444444444444444443333444444444444444444443333344444444445554
Q ss_pred CCcccccccccccCCCCccEEeccCCcC
Q 043765 231 SNNLVGIVLSTIFNKSAVKEIDLFNNSL 258 (452)
Q Consensus 231 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 258 (452)
+|.++...+..+..+++|+.|++++|++
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4444444444444445555555555444
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=6.8e-15 Score=124.25 Aligned_cols=127 Identities=24% Similarity=0.305 Sum_probs=73.6
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+++++++++. +|..+ .+++++|++++|++++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 11 ~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 56777777664 33322 2567777777777765555556667777777777777665555555666666666666666
Q ss_pred CcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCcccc
Q 043765 137 FSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLS 187 (452)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 187 (452)
++ .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 88 l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 65 333333222555555655555555433333455555555555555544
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.1e-14 Score=122.97 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=70.0
Q ss_pred EEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecc
Q 043765 129 VSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYN 208 (452)
Q Consensus 129 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 208 (452)
.++++++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..++.+++|++|++++|
T Consensus 11 ~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3444444444 444333 345566666666555444444555666666666666665444444555666666666666
Q ss_pred cceecCCcccCCCCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcc
Q 043765 209 KLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSG 260 (452)
Q Consensus 209 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 260 (452)
.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6554444445555666666666666655555555555666666666665543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=4.8e-15 Score=125.04 Aligned_cols=133 Identities=22% Similarity=0.209 Sum_probs=102.0
Q ss_pred CCCCCCCCCEEeCCCCcCCCcCChhhhCCC-CCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCC
Q 043765 72 QLGNLSSLVTLDLSQNKLSGDIPSSIFTMH-TLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLP 150 (452)
Q Consensus 72 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 150 (452)
.+..+++|++|++++|+++. ++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.++ .+|..++..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 35667889999999998884 454 44444 899999999998865 67888899999999999988 56666644488
Q ss_pred CCCEEEccCccCCccCCc--cccCCCCCCEEEccCccccccCCCC----ccCCCCccEEEeecccce
Q 043765 151 NLKALLLNNNMIHGKIPS--ILSKCKQLQQLNLGLNDLSGAIPKE----IGNFTSLQKISLIYNKLH 211 (452)
Q Consensus 151 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~~~ 211 (452)
+|++|++++|.+. .+|. .+..+++|++|++++|.+. ..|.. +..+++|+.|+++.|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999886 4454 6778888888888888887 44543 677778888887777654
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=2.2e-12 Score=123.41 Aligned_cols=327 Identities=10% Similarity=0.072 Sum_probs=158.3
Q ss_pred CcCCCCCC-CCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCc---CcccCCccccCCCCCCEEECcCCCCcccCchHH
Q 043765 70 PPQLGNLS-SLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQ---LSGSLSSFTFNMSSMLVSDLSTNRFSGELPETI 145 (452)
Q Consensus 70 ~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 145 (452)
..+|..++ .|+.+.+..+ ++.....+|.++.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++ .++...
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhh
Confidence 34455553 4666666543 444445566666666666665442 34344455666666665555443 22 344444
Q ss_pred hhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCC
Q 043765 146 CNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQD 225 (452)
Q Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 225 (452)
+..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +......+|.. ..|+.+.+..+-.. .....|..+..++
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccc
Confidence 444566666666442 22233445555666666655443 22122233332 44555555443222 2334445555555
Q ss_pred EEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCc
Q 043765 226 TLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLN 305 (452)
Q Consensus 226 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n 305 (452)
................+........... .+.....+..+.+. +.++.....+|.+|+.|+.+.+..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALI------------RYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEE------------ECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT
T ss_pred eecccccccccccceeeccccccccccc------------ccccccccceEEcC-CcceEcccceeeecccccEEecccc
Confidence 4444332222111100000000000000 00011222333332 2334345557778888888777654
Q ss_pred ccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccch
Q 043765 306 SFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLV 385 (452)
Q Consensus 306 ~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 385 (452)
.. .....++.++. .|+.+.+. +.++.....+|.+|++|+.++|..+ ++.....
T Consensus 276 ~~-~I~~~aF~~c~------------------------~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 276 VV-SIGTGAFMNCP------------------------ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp CC-EECTTTTTTCT------------------------TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred cc-eecCccccccc------------------------ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 32 12223333322 55666664 2344344556777777777777643 5555566
Q ss_pred hccCCCccceeecccCcccccChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCCceecc
Q 043765 386 TFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLEGSLLN 447 (452)
Q Consensus 386 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 447 (452)
+|.+|.+|+.+.+..+ ++..-..+|.+|++|+.+++.++.... ..+..+++|+.+.+.
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 7777777777777543 444445677777777777777765422 345666677765553
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.9e-14 Score=120.21 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=54.3
Q ss_pred cCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCcc
Q 043765 122 FNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQ 201 (452)
Q Consensus 122 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 201 (452)
.++.+|++|++++|.++ .+|. +....++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34445555555555554 3332 333233666666666665533 3455556666666666665533323335555555
Q ss_pred EEEeecccceecCCc--ccCCCCCCCEEEccCCccc
Q 043765 202 KISLIYNKLHGEIPL--EVGNLRNQDTLWLGSNNLV 235 (452)
Q Consensus 202 ~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~~~~~ 235 (452)
+|++++|.+. .+|. .+..+++|++|++++|.+.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 5555555553 2332 3444444444544444444
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.5e-16 Score=137.12 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=51.4
Q ss_pred hhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCC
Q 043765 96 SIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQ 175 (452)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 175 (452)
.+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|..+.. +++|++|++++|.+++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-CCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 55555555555555555553 33 4444555555555555554 44443333 4455555555555542 22 3444444
Q ss_pred CCEEEccCccccccCC-CCccCCCCccEEEeecccce
Q 043765 176 LQQLNLGLNDLSGAIP-KEIGNFTSLQKISLIYNKLH 211 (452)
Q Consensus 176 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~ 211 (452)
|++|++++|.++...+ ..+..+++|++|++++|.+.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 5555555544442111 23344444444444444443
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=4.7e-12 Score=121.11 Aligned_cols=311 Identities=10% Similarity=0.093 Sum_probs=190.0
Q ss_pred CCCcCChhhhCCC-CCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC---CcccCchHHhhcCCCCCEEEccCccCCc
Q 043765 89 LSGDIPSSIFTMH-TLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR---FSGELPETICNYLPNLKALLLNNNMIHG 164 (452)
Q Consensus 89 l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (452)
++.....+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++ .+....|..+.+|+.+.+..+ ++.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cce
Confidence 3434456787774 5899988654 666677788888999988887653 44 566666666777877776654 343
Q ss_pred cCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCcccccccccccC
Q 043765 165 KIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGIVLSTIFN 244 (452)
Q Consensus 165 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 244 (452)
....+|..+.+|+.+.+..+. .......|..+..|+.+.+..+ +.......|. ...|+.+.+..+ .......++.+
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~ 203 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSE 203 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTT
T ss_pred ehhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCc-ccccccchhhh
Confidence 445667777888888776443 2244456677777777777654 2222233343 345666666432 23334445566
Q ss_pred CCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHHh
Q 043765 245 KSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQTA 324 (452)
Q Consensus 245 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~ 324 (452)
+..++.......... .+....+........ ....+.....+..+.+... +......+
T Consensus 204 c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ip~~-v~~i~~~a---------- 260 (394)
T 4gt6_A 204 CFALSTITSDSESYP-AIDNVLYEKSANGDY-----------ALIRYPSQREDPAFKIPNG-VARIETHA---------- 260 (394)
T ss_dssp CTTCCEEEECCSSSC-BSSSCEEEECTTSCE-----------EEEECCTTCCCSEEECCTT-EEEECTTT----------
T ss_pred ccccceecccccccc-cccceeecccccccc-----------cccccccccccceEEcCCc-ceEcccce----------
Confidence 666666555443322 111111100000000 0001122333344433221 11122222
Q ss_pred hcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCccc
Q 043765 325 LSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKLA 404 (452)
Q Consensus 325 ~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 404 (452)
+..+. .|+.+.+.++... .....|.++++|+.+.+. +.++.....+|.+|.+|+.+.+..+ ++
T Consensus 261 -------------F~~c~-~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 261 -------------FDSCA-YLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp -------------TTTCS-SCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred -------------eeecc-cccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc
Confidence 33343 7788888655443 566778999999999996 5666677788999999999999765 55
Q ss_pred ccChhhhcCCCCCCEEeCcCCcccccC-CccccCCCCCCceeccc
Q 043765 405 GSIPDDLCRLHRLDTLILDGNEFSESI-PTCLGNLTSLEGSLLNV 448 (452)
Q Consensus 405 ~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~ 448 (452)
.....+|.+|.+|+.+.+..+ +. .+ ..+|.+|++|+.+++..
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESS
T ss_pred EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECC
Confidence 455678999999999999765 43 34 46899999999988764
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=4.7e-16 Score=133.99 Aligned_cols=135 Identities=19% Similarity=0.253 Sum_probs=74.4
Q ss_pred hhCCCCCCEEeCCCCcCcccCCc------cccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccc
Q 043765 97 IFTMHTLKFLYFSDNQLSGSLSS------FTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSIL 170 (452)
Q Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (452)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.++ .+| .+.. +++|++|++++|.+. .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchh
Confidence 44555666666666666655544 5566666666666666665 355 4433 566666666666655 444444
Q ss_pred cCCCCCCEEEccCccccccCCCCccCCCCccEEEeecccceecCC-cccCCCCCCCEEEccCCccccc
Q 043765 171 SKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIP-LEVGNLRNQDTLWLGSNNLVGI 237 (452)
Q Consensus 171 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~ 237 (452)
..+++|++|++++|.+++ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 455566666666665553 22 34555556666666555542111 2345555555555555555443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=5.5e-13 Score=111.48 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=39.1
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+++++++++. +|..+. +++++|++++|++++..|..|.++++|++|++++|++++..+..|.++++|++|++++|.
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 45555555553 333332 455555555555555445555555555555555555554433344444444444444444
Q ss_pred Cc
Q 043765 137 FS 138 (452)
Q Consensus 137 ~~ 138 (452)
++
T Consensus 90 l~ 91 (170)
T 3g39_A 90 LK 91 (170)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=9.6e-13 Score=110.01 Aligned_cols=108 Identities=27% Similarity=0.334 Sum_probs=95.0
Q ss_pred CCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEc
Q 043765 78 SLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLL 157 (452)
Q Consensus 78 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 157 (452)
..+++++++|.++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|.++ .+|...+..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 3589999999998 466655 389999999999999888999999999999999999999 777776655999999999
Q ss_pred cCccCCccCCccccCCCCCCEEEccCcccccc
Q 043765 158 NNNMIHGKIPSILSKCKQLQQLNLGLNDLSGA 189 (452)
Q Consensus 158 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 189 (452)
++|++++..+..|..+++|++|++++|.+...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99999977677899999999999999998743
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=8.9e-13 Score=110.60 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=39.9
Q ss_pred eEEeCCCCccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCC
Q 043765 57 SLNISSFNLQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNR 136 (452)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 136 (452)
.+++++++++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|++++..+..|.++++|++|++++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4566666554 3444332 455555555555555555555555555555555555554333334444444444444444
Q ss_pred Cc
Q 043765 137 FS 138 (452)
Q Consensus 137 ~~ 138 (452)
++
T Consensus 93 l~ 94 (174)
T 2r9u_A 93 LK 94 (174)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.4e-12 Score=109.37 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=93.9
Q ss_pred CCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEcc
Q 043765 79 LVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLN 158 (452)
Q Consensus 79 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 158 (452)
-+.+++++|+++ .+|..+. ++|++|++++|++.+..|..|.++++|++|++++|.++ .+|...+..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 478999999997 6676554 89999999999999888999999999999999999999 6777766559999999999
Q ss_pred CccCCccCCccccCCCCCCEEEccCccccc
Q 043765 159 NNMIHGKIPSILSKCKQLQQLNLGLNDLSG 188 (452)
Q Consensus 159 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 188 (452)
+|.+.+..+..|..+++|++|++++|.+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999996666679999999999999999873
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=7.8e-14 Score=131.74 Aligned_cols=187 Identities=14% Similarity=0.148 Sum_probs=99.0
Q ss_pred CCCCEEEccCCccccccccccc-----CCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccc-----
Q 043765 222 RNQDTLWLGSNNLVGIVLSTIF-----NKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFI----- 291 (452)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l----- 291 (452)
+.+++|++++|.++......+. ..++|+.|++++|.+.+.....+...+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566666666666543333222 225677777777766533333333344567777777776654322222
Q ss_pred cCCCCCcEEEeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCccc----CcccccCCC
Q 043765 292 TNASNLTILEMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGN----IPQVISNLT 367 (452)
Q Consensus 292 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~ 367 (452)
...++|++|++++|.++...... + +..+...+ +|++|+|++|.+++. ++..+..++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~------l-------------~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAV------L-------------MEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHH------H-------------HHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHHH------H-------------HHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 24566777777777664321111 1 01112222 677777777776643 244455566
Q ss_pred CCCEEEccCCcCCccc----chhccCCCccceeecccCcccccChhhhcCC---CC--CCEEe--CcCCccc
Q 043765 368 NFTVLQLGGNELTGPV----LVTFDRLQNLQGLFLSSNKLAGSIPDDLCRL---HR--LDTLI--LDGNEFS 428 (452)
Q Consensus 368 ~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l---~~--L~~L~--l~~n~~~ 428 (452)
+|++|++++|.|++.. +..+..+++|++|+|++|.|++.....+..+ .. |+.+. +..+.+.
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 7777777777776532 2334456777777777777765544444332 11 55555 5555554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.8e-13 Score=129.30 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=15.5
Q ss_pred CCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCC
Q 043765 126 SMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIH 163 (452)
Q Consensus 126 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (452)
+|++|++++|.+++.....+...+++|++|++++|.++
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 44444444444432222222222344455555555443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.8e-11 Score=113.61 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=89.0
Q ss_pred eEEeCCC-CccccCCcCCCCCCCCCEEeCCC-CcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 043765 57 SLNISSF-NLQGTIPPQLGNLSSLVTLDLSQ-NKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLST 134 (452)
Q Consensus 57 ~l~l~~~-~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 134 (452)
.++++++ ++++ +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++.+..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 5788988 7875 677 99999999999996 999987778899999999999999999988888999999999999999
Q ss_pred CCCcccCchHHhhcCCCCCEEEccCccCC
Q 043765 135 NRFSGELPETICNYLPNLKALLLNNNMIH 163 (452)
Q Consensus 135 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (452)
|.++ .+|...+..++ |++|++.+|.+.
T Consensus 90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred Cccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 9998 67777766344 999999988876
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.23 E-value=2.9e-09 Score=101.15 Aligned_cols=305 Identities=8% Similarity=0.043 Sum_probs=197.6
Q ss_pred CCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCC
Q 043765 73 LGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNL 152 (452)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 152 (452)
+....+++.+.+.. .++.....+|.++.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +. .+....+. ..+|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~-~~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ-GTDL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT-TCCC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceec-cCCc
Confidence 34456788887764 345455677888888888888654 555666677776 6777766543 33 56666666 4578
Q ss_pred CEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEeeccccee------------cCCcccCC
Q 043765 153 KALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHG------------EIPLEVGN 220 (452)
Q Consensus 153 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~------------~~~~~~~~ 220 (452)
+.+.+.++- .......|.++ +++.+.+..+ +.......|..+..++.+.+..+.... .....+..
T Consensus 116 ~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 888887643 32333445443 5666665544 232444566677777777665432210 11123344
Q ss_pred CCCCCEEEccCCcccccccccccCCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEE
Q 043765 221 LRNQDTLWLGSNNLVGIVLSTIFNKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTIL 300 (452)
Q Consensus 221 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 300 (452)
...+..+.+... ........+..+..++.+.+..+ +. .+....+..+..|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus 193 ~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 AKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccccccc-eeEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 555666655432 23344456677788888888654 32 455666668889999988765 555666789999999999
Q ss_pred EeeCcccceeCCccccCchhHHHhhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCC
Q 043765 301 EMGLNSFSGFIPNKIGNLRTLQTALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELT 380 (452)
Q Consensus 301 ~L~~n~l~~~~~~~l~~l~~L~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~ 380 (452)
.+..+ +......++.+ +. +|+.+.+.++.++..-..+|.+|++|+.+.|..+ ++
T Consensus 269 ~l~~~-i~~i~~~aF~~-----------------------c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~ 322 (379)
T 4h09_A 269 NFYAK-VKTVPYLLCSG-----------------------CS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK 322 (379)
T ss_dssp EECCC-CSEECTTTTTT-----------------------CT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred ccccc-ceecccccccc-----------------------cc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence 88654 33233333333 33 7888888888887666778999999999999654 66
Q ss_pred cccchhccCCCccceeecccCcccccChhhhcCCCCC
Q 043765 381 GPVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLHRL 417 (452)
Q Consensus 381 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 417 (452)
.....+|.+|++|+.+.+..+ ++..-..+|.+++.+
T Consensus 323 ~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 323 TIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 666778999999999998654 554445677776543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.22 E-value=2.2e-09 Score=101.94 Aligned_cols=307 Identities=8% Similarity=-0.010 Sum_probs=204.1
Q ss_pred hhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCcccCchHHhhcCCCCCEEEccCccCCccCCccccCCCC
Q 043765 96 SIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFSGELPETICNYLPNLKALLLNNNMIHGKIPSILSKCKQ 175 (452)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 175 (452)
.+....+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .+....|..+ +|+.+.+..+ +......+|.. .+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 455667899999865 466677789999999999999765 55 6777777745 7888887654 44344456665 48
Q ss_pred CCEEEccCccccccCCCCccCCCCccEEEeecccceecCCcccCCCCCCCEEEccCCccccc------------cccccc
Q 043765 176 LQQLNLGLNDLSGAIPKEIGNFTSLQKISLIYNKLHGEIPLEVGNLRNQDTLWLGSNNLVGI------------VLSTIF 243 (452)
Q Consensus 176 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~l~ 243 (452)
|+.+.+..+-.. .....|.. .+++.+.+..+ ++......+..+..++...+........ ....+.
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCcccc-cccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 999999765432 33344554 36777766544 3334456677888888877765432211 112333
Q ss_pred CCCCccEEeccCCcCcccCChhhhcCCCCCcEEeccccceeecCCccccCCCCCcEEEeeCcccceeCCccccCchhHHH
Q 043765 244 NKSAVKEIDLFNNSLSGNLPSRTDLALPNIDYLGLAINRFSGTIPSFITNASNLTILEMGLNSFSGFIPNKIGNLRTLQT 323 (452)
Q Consensus 244 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 323 (452)
....+..+.+..... .+....+....+++.+.+..+ +......+|.++..|+.+.+..+ +......++.+
T Consensus 192 ~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~------ 261 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN------ 261 (379)
T ss_dssp TTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTT------
T ss_pred cccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccce------
Confidence 445555555544321 233344446777888777544 44455667888888888888654 33333333333
Q ss_pred hhcCCCCcccCCchhhcchhccceeecccccCcccCcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCcc
Q 043765 324 ALSNNPLDGILPSSIGNLSISMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNKL 403 (452)
Q Consensus 324 ~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 403 (452)
+. .|+.+.+..+ +.......|.+|++|+.+.+.++.++.....+|.+|.+|+.+.+..+ +
T Consensus 262 -----------------~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l 321 (379)
T 4h09_A 262 -----------------CT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L 321 (379)
T ss_dssp -----------------CT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred -----------------ee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c
Confidence 33 6777777543 44455667899999999999999998888889999999999999765 5
Q ss_pred cccChhhhcCCCCCCEEeCcCCcccccCCccccCCCCCC
Q 043765 404 AGSIPDDLCRLHRLDTLILDGNEFSESIPTCLGNLTSLE 442 (452)
Q Consensus 404 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 442 (452)
+..-..+|.+|++|+.+.+..+ +...-..+|.+|..++
T Consensus 322 ~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 322 KTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp CEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred cEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 5455678999999999999765 3322245777775443
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=7.8e-11 Score=110.60 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=71.9
Q ss_pred EEECcCC-CCcccCchHHhhcCCCCCEEEccC-ccCCccCCccccCCCCCCEEEccCccccccCCCCccCCCCccEEEee
Q 043765 129 VSDLSTN-RFSGELPETICNYLPNLKALLLNN-NMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLI 206 (452)
Q Consensus 129 ~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 206 (452)
.++++++ .++ .+|. +.. +++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..|..|..+++|+.|+++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4577776 676 6777 544 77777888875 77776666677777777777777777777767777777777777777
Q ss_pred cccceecCCcccCCCCCCCEEEccCCccc
Q 043765 207 YNKLHGEIPLEVGNLRNQDTLWLGSNNLV 235 (452)
Q Consensus 207 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~ 235 (452)
+|.+.+..+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7777744444444444 777777777665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=2.6e-09 Score=99.96 Aligned_cols=153 Identities=12% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCCCCEEEccCccCCccCCccccCCCCCCEEEccCccccccCCCCcc--CCCCccEEEeecc--cceec-----CCccc-
Q 043765 149 LPNLKALLLNNNMIHGKIPSILSKCKQLQQLNLGLNDLSGAIPKEIG--NFTSLQKISLIYN--KLHGE-----IPLEV- 218 (452)
Q Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n--~~~~~-----~~~~~- 218 (452)
+|+|+.|++++|.-. .++. +. +++|++|++..|.+.......+. .+|+|+.|+++.+ ...+. +...+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 667777777665311 2222 32 56777777776665432222222 5677777776531 11100 11112
Q ss_pred -CCCCCCCEEEccCCccccccccccc---CCCCccEEeccCCcCcccCChhhh---cCCCCCcEEeccccceeecCCccc
Q 043765 219 -GNLRNQDTLWLGSNNLVGIVLSTIF---NKSAVKEIDLFNNSLSGNLPSRTD---LALPNIDYLGLAINRFSGTIPSFI 291 (452)
Q Consensus 219 -~~l~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~l 291 (452)
..+++|++|++.+|.+.+..+..+. .+++|+.|+++.|.+.+.-...+. ..+++|+.|+++.|.++...-..+
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 2467888888887777643322222 467788888888877643222222 246788888888887765433333
Q ss_pred cC-CCCCcEEEeeCcc
Q 043765 292 TN-ASNLTILEMGLNS 306 (452)
Q Consensus 292 ~~-~~~L~~L~L~~n~ 306 (452)
.. + -..++++.+.
T Consensus 328 ~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 328 QKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHC--CSEEECCSBC
T ss_pred HHHc--CCEEEecCCc
Confidence 32 2 3457777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=3.9e-09 Score=98.77 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=25.9
Q ss_pred CCCccEEEeecccceecCCccc---CCCCCCCEEEccCCccccccc----ccccCCCCccEEeccCCcCc
Q 043765 197 FTSLQKISLIYNKLHGEIPLEV---GNLRNQDTLWLGSNNLVGIVL----STIFNKSAVKEIDLFNNSLS 259 (452)
Q Consensus 197 l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~n~~~ 259 (452)
+++|+.|++.+|.+....+..+ ..+++|++|+++.|.+.+... ..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4455555555544432111111 123445555555554443211 11123344555555555443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=1.4e-08 Score=85.70 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=86.1
Q ss_pred ccceeecccc-cCccc----CcccccCCCCCCEEEccCCcCCccc----chhccCCCccceeecccCccccc----Chhh
Q 043765 344 SMERLYIFNC-SISGN----IPQVISNLTNFTVLQLGGNELTGPV----LVTFDRLQNLQGLFLSSNKLAGS----IPDD 410 (452)
Q Consensus 344 ~L~~L~L~~~-~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~----~~~~ 410 (452)
.|++|+|++| .+... +...+...++|++|+|++|.|+... ...+...++|++|+|++|.|.+. +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 8999999999 88753 4455667899999999999997643 44556678999999999999864 4566
Q ss_pred hcCCCCCCEEeC--cCCccccc----CCccccCCCCCCceeccccC
Q 043765 411 LCRLHRLDTLIL--DGNEFSES----IPTCLGNLTSLEGSLLNVAD 450 (452)
Q Consensus 411 ~~~l~~L~~L~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~~~ 450 (452)
+...++|+.|++ ++|.+... +.+.+...++|++|+++.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 778899999999 88999753 45677788999999998764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=3.3e-08 Score=83.46 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=38.4
Q ss_pred CcCCCCCCCCCEEeCCCC-cCCCc----CChhhhCCCCCCEEeCCCCcCccc----CCccccCCCCCCEEECcCCCCc
Q 043765 70 PPQLGNLSSLVTLDLSQN-KLSGD----IPSSIFTMHTLKFLYFSDNQLSGS----LSSFTFNMSSMLVSDLSTNRFS 138 (452)
Q Consensus 70 ~~~~~~l~~L~~L~ls~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~ 138 (452)
...+...+.|++|++++| .+... +...+...++|++|+|++|.+... +...+...++|++|++++|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 334556667777777777 66532 233445556677777777766532 2223334455555555555554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=5.4e-08 Score=80.08 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=71.5
Q ss_pred ccceeecccccCcccCcccccCCCCCCEEEccCCc-CCcccchhccCC----CccceeecccCc-ccccChhhhcCCCCC
Q 043765 344 SMERLYIFNCSISGNIPQVISNLTNFTVLQLGGNE-LTGPVLVTFDRL----QNLQGLFLSSNK-LAGSIPDDLCRLHRL 417 (452)
Q Consensus 344 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~----~~L~~L~l~~n~-i~~~~~~~~~~l~~L 417 (452)
.|+.|++++|.++..-...+.+|++|++|+|++|. |++.....+..+ ++|++|+|++|. |++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 79999999999987766778899999999999995 887666666653 589999999985 887666678889999
Q ss_pred CEEeCcCCcc
Q 043765 418 DTLILDGNEF 427 (452)
Q Consensus 418 ~~L~l~~n~~ 427 (452)
+.|++++|+-
T Consensus 142 ~~L~L~~c~~ 151 (176)
T 3e4g_A 142 KYLFLSDLPG 151 (176)
T ss_dssp CEEEEESCTT
T ss_pred CEEECCCCCC
Confidence 9999999964
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=6.8e-08 Score=85.68 Aligned_cols=81 Identities=25% Similarity=0.325 Sum_probs=62.1
Q ss_pred cCCCCCCEEEccCCcCCc--ccchhccCCCccceeecccCcccccChhhhcCCC--CCCEEeCcCCcccccCC-------
Q 043765 364 SNLTNFTVLQLGGNELTG--PVLVTFDRLQNLQGLFLSSNKLAGSIPDDLCRLH--RLDTLILDGNEFSESIP------- 432 (452)
Q Consensus 364 ~~~~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~------- 432 (452)
..+++|+.|+|++|+|.+ .++..+..+++|+.|+|++|+|.+. ..+..+. +|+.|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457889999999999887 4456667889999999999998864 3344444 89999999999987665
Q ss_pred ccccCCCCCCceec
Q 043765 433 TCLGNLTSLEGSLL 446 (452)
Q Consensus 433 ~~~~~~~~L~~L~l 446 (452)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 24677888888653
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=5.5e-07 Score=79.88 Aligned_cols=66 Identities=26% Similarity=0.317 Sum_probs=33.7
Q ss_pred CCCCCCEEeCCCCcCCC--cCChhhhCCCCCCEEeCCCCcCcccCCccccCCC--CCCEEECcCCCCcccCc
Q 043765 75 NLSSLVTLDLSQNKLSG--DIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMS--SMLVSDLSTNRFSGELP 142 (452)
Q Consensus 75 ~l~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~ 142 (452)
.+++|++|+|++|.+++ .++..+..+++|++|+|++|++.+. ..+..+. +|++|++++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34556666666666554 2334445556666666666655533 1122222 55555555555554333
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=1.1e-07 Score=78.18 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=71.5
Q ss_pred CcccccCCCCCCEEEccCCcCCcccchhccCCCccceeecccCc-ccccChhhhcCC----CCCCEEeCcCCc-ccccCC
Q 043765 359 IPQVISNLTNFTVLQLGGNELTGPVLVTFDRLQNLQGLFLSSNK-LAGSIPDDLCRL----HRLDTLILDGNE-FSESIP 432 (452)
Q Consensus 359 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~ 432 (452)
+|.....-..|++||++++.|+......+..|++|+.|+|++|. +++..-..+..+ ++|+.|+|++|. ++..--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433334579999999999998888888899999999999995 887655666664 589999999995 766444
Q ss_pred ccccCCCCCCceecccc
Q 043765 433 TCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 433 ~~~~~~~~L~~L~l~~~ 449 (452)
..+.++++|++|+++.|
T Consensus 133 ~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HHGGGCTTCCEEEEESC
T ss_pred HHHhcCCCCCEEECCCC
Confidence 56778999999888743
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.90 E-value=6.2e-06 Score=69.11 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=81.7
Q ss_pred ccceeecccc-cCccc----CcccccCCCCCCEEEccCCcCCc----ccchhccCCCccceeecccCccccc----Chhh
Q 043765 344 SMERLYIFNC-SISGN----IPQVISNLTNFTVLQLGGNELTG----PVLVTFDRLQNLQGLFLSSNKLAGS----IPDD 410 (452)
Q Consensus 344 ~L~~L~L~~~-~l~~~----~~~~~~~~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~ 410 (452)
.|+.|+|+++ .+... +...+..-+.|++|+|++|.|+. .+...+...+.|+.|+|++|.|.+. +.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 8999999985 77643 45556677899999999999986 3445566789999999999999864 3445
Q ss_pred hcCCCCCCEEeCcCC---cccc----cCCccccCCCCCCceecccc
Q 043765 411 LCRLHRLDTLILDGN---EFSE----SIPTCLGNLTSLEGSLLNVA 449 (452)
Q Consensus 411 ~~~l~~L~~L~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~~ 449 (452)
+...+.|+.|+|++| .+.. .+.+.+..-+.|+.|+++.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 677789999999876 3432 25567788889999888754
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=4.5e-05 Score=63.91 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=54.2
Q ss_pred ccceeecccccCccc----CcccccCCCCCCEEEccCCcCCcc----cchhccCCCccceeecccC---cccc----cCh
Q 043765 344 SMERLYIFNCSISGN----IPQVISNLTNFTVLQLGGNELTGP----VLVTFDRLQNLQGLFLSSN---KLAG----SIP 408 (452)
Q Consensus 344 ~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n---~i~~----~~~ 408 (452)
.|+.|+|++|.+.+. +...+..-+.|++|+|++|.|+.. +.+.+...+.|++|+|++| .+.+ .+.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 677777777777643 233344557788888888887653 3334555677888888755 3332 234
Q ss_pred hhhcCCCCCCEEeCcCCcc
Q 043765 409 DDLCRLHRLDTLILDGNEF 427 (452)
Q Consensus 409 ~~~~~l~~L~~L~l~~n~~ 427 (452)
+.+...+.|+.|+++.|.+
T Consensus 151 ~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCcCeEeccCCCc
Confidence 4566678888888887765
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0038 Score=48.61 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=29.8
Q ss_pred eEEeCCCCcc-ccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCCCcC
Q 043765 57 SLNISSFNLQ-GTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSDNQL 113 (452)
Q Consensus 57 ~l~l~~~~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 113 (452)
.++.++++++ ..+|..+. +++++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4666666665 23443322 2466666666666654445555555566555555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.0047 Score=48.08 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=37.7
Q ss_pred CEEeCCCCcCC-CcCChhhhCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCCCc
Q 043765 80 VTLDLSQNKLS-GDIPSSIFTMHTLKFLYFSDNQLSGSLSSFTFNMSSMLVSDLSTNRFS 138 (452)
Q Consensus 80 ~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 138 (452)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777775 24453321 35777888888877666666777777777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.90 E-value=23 Score=25.41 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=16.9
Q ss_pred ccccCCCCCCEEEccCccccccCCCCccCCCCccEEEee
Q 043765 168 SILSKCKQLQQLNLGLNDLSGAIPKEIGNFTSLQKISLI 206 (452)
Q Consensus 168 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 206 (452)
.+|.+|.+|+.+.+..+- +..-..+|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEc
Confidence 444555555555444331 21333344445555555444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.71 E-value=22 Score=25.52 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=22.0
Q ss_pred ccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhCCCCCCEEeCCC
Q 043765 65 LQGTIPPQLGNLSSLVTLDLSQNKLSGDIPSSIFTMHTLKFLYFSD 110 (452)
Q Consensus 65 ~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~ 110 (452)
++..-..+|..+..|+.+.+-.+ ++.....+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334445555555555555443 2323344555555555555543
Done!