Query 043767
Match_columns 105
No_of_seqs 112 out of 225
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_W 60S ribosomal protein L 100.0 5.4E-46 1.8E-50 271.4 4.9 94 10-103 1-98 (130)
2 3izc_W 60S ribosomal protein R 100.0 1E-45 3.4E-50 267.3 5.2 82 22-103 6-89 (121)
3 4a18_M RPL22, ribosomal protei 100.0 2.3E-45 7.9E-50 264.5 4.3 81 23-103 9-91 (118)
4 3me0_B PAPG protein; immunoglo 47.4 1.3 4.4E-05 32.0 -2.6 58 26-85 32-105 (128)
5 2l9b_B MRNA 3'-END-processing 37.6 15 0.0005 22.9 1.5 20 40-59 25-44 (53)
6 2b3g_B Cellular tumor antigen 33.5 17 0.00057 19.9 1.1 20 36-55 5-24 (28)
7 2kl8_A OR15; structural genomi 33.2 35 0.0012 22.6 2.9 35 45-82 11-45 (85)
8 1ggl_A Protein (cellular retin 31.0 39 0.0013 23.2 3.0 41 46-87 13-57 (134)
9 3sgr_A Tandem repeat of amyloi 29.9 5.7 0.00019 21.3 -1.2 19 53-71 6-24 (25)
10 4a1y_A Myelin P2 protein; tran 28.6 22 0.00075 24.5 1.4 42 45-87 14-59 (133)
11 3fxt_A Nucleoside diphosphate- 27.9 15 0.00051 25.5 0.4 30 30-59 34-63 (113)
12 4a60_A Fatty acid-binding prot 26.1 46 0.0016 23.7 2.7 42 45-87 35-80 (154)
13 1xtz_A Ribose-5-phosphate isom 25.9 1.3E+02 0.0045 23.1 5.5 50 30-82 205-256 (264)
14 1uj6_A Ribose 5-phosphate isom 25.5 1.3E+02 0.0044 22.3 5.3 49 30-81 175-225 (227)
15 2lo0_A Uncharacterized protein 24.4 20 0.00069 23.5 0.5 18 41-58 34-55 (75)
16 3eyr_A Uncharacterized lipopro 23.9 27 0.00094 25.5 1.2 41 44-84 19-70 (178)
17 2f73_A L-FABP, fatty acid-bind 22.7 58 0.002 23.0 2.7 42 46-88 34-79 (149)
18 2an7_A Protein PARD; bacterial 22.1 40 0.0014 22.6 1.6 22 46-68 46-67 (83)
19 3vg7_A Fatty acid-binding prot 21.7 68 0.0023 21.9 2.8 43 45-88 14-60 (132)
20 2cqa_A RUVB-like 2; TIP48, TIP 21.5 69 0.0024 21.7 2.8 32 45-83 51-82 (95)
21 3q6l_A Fatty acid-binding prot 21.1 37 0.0013 24.1 1.4 42 45-87 33-78 (152)
22 2a0a_A DER F 13; beta barrel, 21.1 66 0.0023 21.8 2.6 42 46-88 13-58 (131)
23 3elx_A Ileal bIle acid-binding 20.8 82 0.0028 21.8 3.1 43 45-88 14-61 (138)
24 2lba_A BABP protein; ileal bIl 20.5 64 0.0022 22.2 2.5 41 46-87 16-61 (136)
No 1
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_W
Probab=100.00 E-value=5.4e-46 Score=271.45 Aligned_cols=94 Identities=69% Similarity=0.967 Sum_probs=78.6
Q ss_pred ccccCCCCCC-CCCCCccceeEEEEeeecccCCCccchhHHHHHhhcceee-ccccCCCCCeEEEEeeCCeEEEEecccc
Q 043767 10 MSRGSGGAAG-GGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKV-GGKAGALGDTVTVTRDKTKITVLSDSNF 87 (105)
Q Consensus 10 m~~~~~~~~~-~~~k~kK~~~kF~IDCt~PveD~I~d~a~FEkFL~erIKV-nGKtgnLg~~V~i~r~k~kI~V~s~~pf 87 (105)
|||+.+.+.+ .+.+++|+.++|+||||+||||+|||+++||+|||||||| ||++||||+.|+|++++++|+|+|++||
T Consensus 1 ~~~~~~~~~~~~~~~kkk~~~kF~IDct~PveD~I~d~a~fekfL~erIKV~nGk~gnLg~~V~i~~~k~ki~V~s~~~f 80 (130)
T 3iz5_W 1 MARGVAVAAKGGAGGKKKGSVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGAF 80 (130)
T ss_dssp -------------CCCCEEEEEECCCCCCSSSCSCCCSHHHHHHHHHHHHHHSSCCSSSCCCEEEEECSSCEEEEESSSC
T ss_pred CCcccccccccccCCccccceEEEEEecCcccCCeecHHHHHHHHHhheeecCCcccccCCceEEEEeCCEEEEEeccee
Confidence 8888864443 3246677888999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cceee--hhhhhhccccc
Q 043767 88 SKRYL--LLKRLLKLPCA 103 (105)
Q Consensus 88 SKRYL--LTKKyLKK~~~ 103 (105)
||||| |||||||||+-
T Consensus 81 SKRYLKYLTKKyLKKn~L 98 (130)
T 3iz5_W 81 SKRYLKYLTKKYLKKHNV 98 (130)
T ss_dssp SSTTHHHHHHHHHTTSSS
T ss_pred chHHHHHHHHHHHhhcch
Confidence 99999 99999999873
No 2
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=100.00 E-value=1e-45 Score=267.34 Aligned_cols=82 Identities=44% Similarity=0.662 Sum_probs=78.6
Q ss_pred CCCccceeEEEEeeecccCCCccchhHHHHHhhcceeeccccCCCCCeEEEEeeCCeEEEEecccccceee--hhhhhhc
Q 043767 22 AKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYL--LLKRLLK 99 (105)
Q Consensus 22 ~k~kK~~~kF~IDCt~PveD~I~d~a~FEkFL~erIKVnGKtgnLg~~V~i~r~k~kI~V~s~~pfSKRYL--LTKKyLK 99 (105)
++++|+.++|+||||+||||+|||+++||+||||||||||++||||+.|+|+|++++|+|+|++||||||| |||||||
T Consensus 6 ~~~kk~~~kF~iDct~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s~~~fSKRYLKYLTKKyLK 85 (121)
T 3izc_W 6 SRKQKIAKTFTVDVSSPTENGVFDPASYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVSTAKFSGKYLKYLTKKYLK 85 (121)
T ss_dssp CCCCEEEEEEECCCCCSSSCSCCCSHHHHHHHHHHHHHHSSSSSCCCCEEEEECSSEEEEEESSSCSHHHHHHHHHHHHT
T ss_pred ccccceeEEEEEEcCCcccCCeecHHHHHHHHHHHheecCcccccCceEEEEEcCCEEEEEeccccchHHHHHHHHHHhh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccc
Q 043767 100 LPCA 103 (105)
Q Consensus 100 K~~~ 103 (105)
||+-
T Consensus 86 K~~L 89 (121)
T 3izc_W 86 KNQL 89 (121)
T ss_dssp TSSS
T ss_pred hccc
Confidence 9873
No 3
>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M
Probab=100.00 E-value=2.3e-45 Score=264.55 Aligned_cols=81 Identities=48% Similarity=0.769 Sum_probs=76.2
Q ss_pred CCccceeEEEEeeecccCCCccchhHHHHHhhcceeeccccCCCCCeEEEEeeCCeEEEEecccccceee--hhhhhhcc
Q 043767 23 KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYL--LLKRLLKL 100 (105)
Q Consensus 23 k~kK~~~kF~IDCt~PveD~I~d~a~FEkFL~erIKVnGKtgnLg~~V~i~r~k~kI~V~s~~pfSKRYL--LTKKyLKK 100 (105)
+.+|+.++|+||||+||||+|||+++||+||||||||||++||||+.|+|++++++|+|+|++||||||| ||||||||
T Consensus 9 ~~kk~~~kF~iDct~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s~~~fSKRYLKYLTKKyLKK 88 (118)
T 4a18_M 9 QVKKVNLGFKIDCSQPVEDKVILIGEFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFSKRYLKYLTKKYLKK 88 (118)
T ss_dssp ---CCCEEEEEECHHHHHTTCCCHHHHHHHHHHHCCBTTBSSCCTTTEEEEECSSEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred ccceeeEEEEEEccCcccCceecHHHHHHHHHHHhhccCcccccCCeEEEEEcCCEEEEEeccccchHHHHHHHHHHhhh
Confidence 4568889999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccc
Q 043767 101 PCA 103 (105)
Q Consensus 101 ~~~ 103 (105)
|+-
T Consensus 89 ~~L 91 (118)
T 4a18_M 89 QDL 91 (118)
T ss_dssp TTC
T ss_pred ccc
Confidence 873
No 4
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=47.42 E-value=1.3 Score=32.02 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=34.4
Q ss_pred cceeEEEEeeecccCCCccch-hHH-------HHH-------hhcceeeccc-cCCCCCeEEEEeeCCeEEEEecc
Q 043767 26 KKGATFTIDCAKPVEDKIMDI-ASL-------EKF-------LQERIKVGGK-AGALGDTVTVTRDKTKITVLSDS 85 (105)
Q Consensus 26 K~~~kF~IDCt~PveD~I~d~-a~F-------EkF-------L~erIKVnGK-tgnLg~~V~i~r~k~kI~V~s~~ 85 (105)
....-|+|-|+.|+. -+|.+ ++. ++| |-.+|.+||. .|.++-.......+ .++|.|..
T Consensus 32 t~~~~isV~Ct~p~~-Vki~lt~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~~~~~~~~~s~-tvtV~S~L 105 (128)
T 3me0_B 32 YAAQTLSVSCDVPAN-IRFMLLRNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGETTMRWYKAGTQ-NLTIGSRL 105 (128)
T ss_dssp EEEEEEEEEESSCEE-EEEEEEECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEEEEEESSSEEE-EEEEEEEE
T ss_pred EEeeEEEEEeCCCce-EEEEEecCCcccccccCceEEecCCCeEEEEEECCeeccceeEEEEecCCc-EEEEEEEE
Confidence 345689999999974 44444 311 344 5678999998 66655432221122 36666654
No 5
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=37.58 E-value=15 Score=22.95 Aligned_cols=20 Identities=20% Similarity=0.622 Sum_probs=17.4
Q ss_pred CCCccchhHHHHHhhcceee
Q 043767 40 EDKIMDIASLEKFLQERIKV 59 (105)
Q Consensus 40 eD~I~d~a~FEkFL~erIKV 59 (105)
.+.++|+..|..||.|...+
T Consensus 25 K~~~ld~~klv~~L~dqV~i 44 (53)
T 2l9b_B 25 NTNLLDAQKLVNFLNDQVEI 44 (53)
T ss_dssp CSSCCCHHHHHHHHHHTCCC
T ss_pred cccccCHHHHHHHHHhcccc
Confidence 56789999999999997765
No 6
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=33.53 E-value=17 Score=19.94 Aligned_cols=20 Identities=15% Similarity=0.506 Sum_probs=16.9
Q ss_pred ecccCCCccchhHHHHHhhc
Q 043767 36 AKPVEDKIMDIASLEKFLQE 55 (105)
Q Consensus 36 t~PveD~I~d~a~FEkFL~e 55 (105)
++.++|-.+.+.+.|++|.+
T Consensus 5 sqa~ddlmlspddi~qw~s~ 24 (28)
T 2b3g_B 5 SQAMDDLMLSPDDIEQWFTE 24 (28)
T ss_dssp GGTTGGGGCCHHHHHHHHHC
T ss_pred hhHHHhhhcChHHHHHHhhc
Confidence 45678999999999999875
No 7
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=33.17 E-value=35 Score=22.62 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=28.0
Q ss_pred chhHHHHHhhcceeeccccCCCCCeEEEEeeCCeEEEE
Q 043767 45 DIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVL 82 (105)
Q Consensus 45 d~a~FEkFL~erIKVnGKtgnLg~~V~i~r~k~kI~V~ 82 (105)
|+..||+-|.|-|. .+..+...|+-+-++|.+.+.
T Consensus 11 dleafekalkemir---qarkfagtvtytldgndleir 45 (85)
T 2kl8_A 11 DLEAFEKALKEMIR---QARKFAGTVTYTLDGNDLEIR 45 (85)
T ss_dssp SHHHHHHHHHHHHH---HHTTTTCEEEEEECSSCEEEE
T ss_pred cHHHHHHHHHHHHH---HHHhhcceEEEEecCCeeEEE
Confidence 67899999999886 456678889999999875543
No 8
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=31.01 E-value=39 Score=23.16 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=28.0
Q ss_pred hhHHHHHhhcceeeccccCC----CCCeEEEEeeCCeEEEEecccc
Q 043767 46 IASLEKFLQERIKVGGKAGA----LGDTVTVTRDKTKITVLSDSNF 87 (105)
Q Consensus 46 ~a~FEkFL~erIKVnGKtgn----Lg~~V~i~r~k~kI~V~s~~pf 87 (105)
..+||.||.. +=|+=-+-+ +.-.+.|+.+++.+++.+..+|
T Consensus 13 seNfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 57 (134)
T 1ggl_A 13 QKNMEDYLQA-LNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTF 57 (134)
T ss_dssp EECHHHHHHH-TTCCTTTTTTGGGCCCEEEEEECSSEEEEEEECSS
T ss_pred CcCHHHHHHH-hCCCHHHHhhhhcCCcEEEEEEcCCEEEEEEEcCC
Confidence 5689999975 333322222 2346889999999999887775
No 9
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=29.85 E-value=5.7 Score=21.26 Aligned_cols=19 Identities=47% Similarity=0.786 Sum_probs=11.5
Q ss_pred hhcceeeccccCCCCCeEE
Q 043767 53 LQERIKVGGKAGALGDTVT 71 (105)
Q Consensus 53 L~erIKVnGKtgnLg~~V~ 71 (105)
|-+-|.|+||..-||+.|.
T Consensus 6 lgdvievggklkvlgdvie 24 (25)
T 3sgr_A 6 LGDVIEVGGKLKVLGDVIE 24 (26)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred eeeeeeeCcEEEEeeeEEe
Confidence 3455667777666666553
No 10
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=28.61 E-value=22 Score=24.54 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=28.6
Q ss_pred chhHHHHHhhcceeec---cccC-CCCCeEEEEeeCCeEEEEecccc
Q 043767 45 DIASLEKFLQERIKVG---GKAG-ALGDTVTVTRDKTKITVLSDSNF 87 (105)
Q Consensus 45 d~a~FEkFL~erIKVn---GKtg-nLg~~V~i~r~k~kI~V~s~~pf 87 (105)
+..+||.||.. +=|+ -+.+ .+.-.+.|+.+++.+++.+..+|
T Consensus 14 ~sENfdeylka-lGv~~~~Rk~a~~~kp~~~I~~~Gd~~tikt~s~~ 59 (133)
T 4a1y_A 14 SSENFDDYMKA-LGVGLATRKLGNLAKPTVIISKKGDIITIRTESTF 59 (133)
T ss_dssp EEESHHHHHHH-HTCCHHHHHHHHHCCCEEEEEEETTEEEEEEEETT
T ss_pred eccCHHHHHHH-cCCCHHHHHhHhhCCCeEEEEECCCEEEEEEecCC
Confidence 35689999965 2222 0222 23457899999999999887776
No 11
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=27.88 E-value=15 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=22.5
Q ss_pred EEEEeeecccCCCccchhHHHHHhhcceee
Q 043767 30 TFTIDCAKPVEDKIMDIASLEKFLQERIKV 59 (105)
Q Consensus 30 kF~IDCt~PveD~I~d~a~FEkFL~erIKV 59 (105)
-.+||+...-.-..+|++.|...|++-|.-
T Consensus 34 GV~Vd~~~l~~~~~~d~~~F~~~L~~SL~~ 63 (113)
T 3fxt_A 34 GISVRLARLDALDRLDAAAFQKGLQAAVQQ 63 (113)
T ss_dssp CEEEEHHHHTTTSCBCHHHHHHHHHHHHHH
T ss_pred CEEEeCCccCCcCcCCHHHHHHHHHHHHHH
Confidence 367998763112468999999999998876
No 12
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=26.06 E-value=46 Score=23.72 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=29.0
Q ss_pred chhHHHHHhhcceeec---cccC-CCCCeEEEEeeCCeEEEEecccc
Q 043767 45 DIASLEKFLQERIKVG---GKAG-ALGDTVTVTRDKTKITVLSDSNF 87 (105)
Q Consensus 45 d~a~FEkFL~erIKVn---GKtg-nLg~~V~i~r~k~kI~V~s~~pf 87 (105)
+..+||.||.. +=|+ -+.+ .+.-.+.|+.+++.+++.+..+|
T Consensus 35 ssENfdeymka-lGV~~~~Rk~a~~~kp~~eI~q~Gd~~tikt~st~ 80 (154)
T 4a60_A 35 SSENFEDYMKE-LGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSF 80 (154)
T ss_dssp EEESHHHHHHH-HTCCHHHHHHHTTSCCEEEEEEETTEEEEEEEETT
T ss_pred eccCHHHHHHH-hCCCHHHHHHHhcCCceEEEEEcCCEEEEEEEcCC
Confidence 35689999975 3333 1222 34457899999999999887775
No 13
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=25.86 E-value=1.3e+02 Score=23.08 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=35.0
Q ss_pred EEEEeeecccCCCccchhHHHHHhhcceee--ccccCCCCCeEEEEeeCCeEEEE
Q 043767 30 TFTIDCAKPVEDKIMDIASLEKFLQERIKV--GGKAGALGDTVTVTRDKTKITVL 82 (105)
Q Consensus 30 kF~IDCt~PveD~I~d~a~FEkFL~erIKV--nGKtgnLg~~V~i~r~k~kI~V~ 82 (105)
-|.|||.-+ .|-|+..++..|..--=| +|---++.+.|-|...++.++++
T Consensus 205 N~IlD~~f~---~i~dp~~l~~~l~~i~GVVe~GlF~~~a~~vi~~~~~G~~~~~ 256 (264)
T 1xtz_A 205 NFIIDADFG---EISDPRKLHREIKLLVGVVETGLFIDNASKAYFGNSDGSVEVT 256 (264)
T ss_dssp CEEEEEECS---SBSCHHHHHHHHHTSTTEEEESEECSCCSEEEEECTTSCEEEE
T ss_pred CEEEEeeCC---CCCCHHHHHHHHhcCCCccccceEecCCCEEEEEeCCceEEee
Confidence 599999775 388999999999653223 45555667778787766655544
No 14
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=25.53 E-value=1.3e+02 Score=22.31 Aligned_cols=49 Identities=20% Similarity=0.109 Sum_probs=34.7
Q ss_pred EEEEeeecccCCCccchhHHHHHhhcceee--ccccCCCCCeEEEEeeCCeEEE
Q 043767 30 TFTIDCAKPVEDKIMDIASLEKFLQERIKV--GGKAGALGDTVTVTRDKTKITV 81 (105)
Q Consensus 30 kF~IDCt~PveD~I~d~a~FEkFL~erIKV--nGKtgnLg~~V~i~r~k~kI~V 81 (105)
-|.|||.-+ .|.|+..++..|..--=| +|---++.+.|-|...++.+++
T Consensus 175 n~ilD~~~~---~i~~~~~l~~~l~~i~GVve~GlF~~~a~~~~~~~~~g~~~~ 225 (227)
T 1uj6_A 175 HLIADCRFG---PIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEEL 225 (227)
T ss_dssp CEEEEECCC---SCSCHHHHHHHHHTSTTEEEESEECSCCSEEEEEETTEEEEE
T ss_pred CEEEEeeCC---CCCCHHHHHHHHhCCCCcceeccEecCCCEEEEEeCCCeEEe
Confidence 599999764 488999999999753223 4555566777877776665554
No 15
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=24.43 E-value=20 Score=23.55 Aligned_cols=18 Identities=22% Similarity=0.656 Sum_probs=14.1
Q ss_pred CCccchhHH----HHHhhccee
Q 043767 41 DKIMDIASL----EKFLQERIK 58 (105)
Q Consensus 41 D~I~d~a~F----EkFL~erIK 58 (105)
-.+++..+| +-||++|||
T Consensus 34 ~~vl~TeeFW~DL~gFL~qRlk 55 (75)
T 2lo0_A 34 ESVVATEAFWDDLQGFLEQRLK 55 (75)
T ss_dssp STTTTSHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHHhcC
Confidence 456776654 889999998
No 16
>3eyr_A Uncharacterized lipoprotein YCEB; ER542 NESG X-RAY YCEB_COLI P0AB26, structural genomics, PSI- 2, protein structure initiative; 2.01A {Escherichia coli K12} PDB: 3l6i_A
Probab=23.89 E-value=27 Score=25.53 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=30.0
Q ss_pred cchhHHHHHhhcceeeccccCCCCC----------eEEEEe-eCCeEEEEec
Q 043767 44 MDIASLEKFLQERIKVGGKAGALGD----------TVTVTR-DKTKITVLSD 84 (105)
Q Consensus 44 ~d~a~FEkFL~erIKVnGKtgnLg~----------~V~i~r-~k~kI~V~s~ 84 (105)
+.-++.++||++++..+-+.|..|- .|+|.+ +.++|.++.+
T Consensus 19 iSE~elq~yL~k~~~~~~~~g~~gl~~~~v~L~n~~v~ig~~~~nrv~l~~~ 70 (178)
T 3eyr_A 19 ITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGD 70 (178)
T ss_dssp EEHHHHHHHHHHHCCCEEEEEETTTEEEEEEEEEEEEEESSSSTTCEEEEEE
T ss_pred ECHHHHHHHHHHhCChhheeccCceeEEEEEEcCceEecCCCCCCEEEEEEE
Confidence 3456799999999988878876552 355556 5678888776
No 17
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=22.75 E-value=58 Score=22.98 Aligned_cols=42 Identities=7% Similarity=0.173 Sum_probs=28.1
Q ss_pred hhHHHHHhhcceeecc---cc-CCCCCeEEEEeeCCeEEEEeccccc
Q 043767 46 IASLEKFLQERIKVGG---KA-GALGDTVTVTRDKTKITVLSDSNFS 88 (105)
Q Consensus 46 ~a~FEkFL~erIKVnG---Kt-gnLg~~V~i~r~k~kI~V~s~~pfS 88 (105)
..+||.||.. +=|+= +. ..+.-.+.|+.+++.+++.+..+|.
T Consensus 34 sENfdeylka-lGV~~~~Rk~a~~~kp~~eI~~~Gd~~tikt~st~k 79 (149)
T 2f73_A 34 QENFEAFMKA-IGLPEELIQKGKDIKGVSEIVQNGKHFKFTITAGSK 79 (149)
T ss_dssp EECHHHHHHH-TTCCHHHHHHHTTCCCEEEEEEETTEEEEEEEETTE
T ss_pred CcCHHHHHHH-cCCCHHHHhhhccCCceEEEEEeCCEEEEEEEeCCe
Confidence 4579999975 22221 22 2344578899999999988877753
No 18
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=22.06 E-value=40 Score=22.61 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=18.2
Q ss_pred hhHHHHHhhcceeeccccCCCCC
Q 043767 46 IASLEKFLQERIKVGGKAGALGD 68 (105)
Q Consensus 46 ~a~FEkFL~erIKVnGKtgnLg~ 68 (105)
..+++.||..||. +|.+|++..
T Consensus 46 w~el~~~l~~ri~-~gl~g~~s~ 67 (83)
T 2an7_A 46 WQELKTMLGNRIN-DGLAGKVST 67 (83)
T ss_dssp HHHHHHHSCSCCC-SSCCSCCSS
T ss_pred HHHHHHHHHHHHH-HHHcCCCCc
Confidence 4679999999995 899998753
No 19
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=21.66 E-value=68 Score=21.94 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=29.2
Q ss_pred chhHHHHHhhcceeecc---ccC-CCCCeEEEEeeCCeEEEEeccccc
Q 043767 45 DIASLEKFLQERIKVGG---KAG-ALGDTVTVTRDKTKITVLSDSNFS 88 (105)
Q Consensus 45 d~a~FEkFL~erIKVnG---Ktg-nLg~~V~i~r~k~kI~V~s~~pfS 88 (105)
+..+||.||.. +=|+= +.+ .+.-.+.|+.+++.+++.+..+|.
T Consensus 14 sseNfdeymka-lGv~~~~rk~~~~~kp~~~I~~~Gd~~~ikt~s~~k 60 (132)
T 3vg7_A 14 SQENFEAFMKA-IGLPEELIQKGKDIKGVSEIVQNGKHFKFTITAGSK 60 (132)
T ss_dssp EEESHHHHHHH-TTCCHHHHHHHTTCCCEEEEEEETTEEEEEEEETTE
T ss_pred eccCHHHHHHH-hCCCHHHHHHHHhCCCEEEEEEcCCEEEEEEEEcCc
Confidence 35689999976 33321 223 334578999999998888877753
No 20
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=21.54 E-value=69 Score=21.67 Aligned_cols=32 Identities=22% Similarity=0.514 Sum_probs=26.0
Q ss_pred chhHHHHHhhcceeeccccCCCCCeEEEEeeCCeEEEEe
Q 043767 45 DIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLS 83 (105)
Q Consensus 45 d~a~FEkFL~erIKVnGKtgnLg~~V~i~r~k~kI~V~s 83 (105)
++.=.|++++++|.+ ||.|.|..+-++|.-..
T Consensus 51 g~~i~e~L~kekV~~-------GDVI~Id~~sG~V~klG 82 (95)
T 2cqa_A 51 GTKMIESLTKDKVQA-------GDVITIDKATGKISKLG 82 (95)
T ss_dssp CSHHHHHHHHTTCCT-------TSEEEEETTTTEEEEEE
T ss_pred CHHHHHHHHHcCcee-------CCEEEEEccCCEEEEEE
Confidence 345589999998877 89999999888877654
No 21
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=21.11 E-value=37 Score=24.12 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=28.5
Q ss_pred chhHHHHHhhcceeecc---ccC-CCCCeEEEEeeCCeEEEEecccc
Q 043767 45 DIASLEKFLQERIKVGG---KAG-ALGDTVTVTRDKTKITVLSDSNF 87 (105)
Q Consensus 45 d~a~FEkFL~erIKVnG---Ktg-nLg~~V~i~r~k~kI~V~s~~pf 87 (105)
+..+||.||.. +=|+= +.+ .+.-.+.|+.+++.+++.+..+|
T Consensus 33 ssENfdeymka-lGv~~~~Rk~a~~~kp~~eI~~~Gd~~tikt~st~ 78 (152)
T 3q6l_A 33 SSENFDDYMKE-VGVGFATRKVAGMAKPNMIISVNGDVITIKSESTF 78 (152)
T ss_dssp EEESHHHHHHH-HTCCHHHHHHHHHCCCEEEEEEETTEEEEEEECSS
T ss_pred eccCHHHHHHH-hCCCHHHHHHHHhCCCeEEEEEcCCEEEEEEEecc
Confidence 35689999976 33321 112 23457889999999999887776
No 22
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=21.07 E-value=66 Score=21.83 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=28.1
Q ss_pred hhHHHHHhhcceeecc---ccCC-CCCeEEEEeeCCeEEEEeccccc
Q 043767 46 IASLEKFLQERIKVGG---KAGA-LGDTVTVTRDKTKITVLSDSNFS 88 (105)
Q Consensus 46 ~a~FEkFL~erIKVnG---Ktgn-Lg~~V~i~r~k~kI~V~s~~pfS 88 (105)
..+|+.||.. +=|+= +.++ +.-.+.|+.+++.+++.+..+|.
T Consensus 13 seNfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~k 58 (131)
T 2a0a_A 13 SEKFDEFLDK-LGVGFMVKTAAKTLKPTFEVAIENDQYIFRSLSTFK 58 (131)
T ss_dssp CCSHHHHHHH-HTCCHHHHTGGGTTCCEEEEEECSSCEEEEECCTTS
T ss_pred CcCHHHHHHH-cCCCHHHHHHhhcCCceEEEEEcCCEEEEEEEcCCe
Confidence 5679999975 22321 2223 34578899999999998877653
No 23
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=20.81 E-value=82 Score=21.78 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=29.6
Q ss_pred chhHHHHHhhcceeecc---ccCC-CCCeEEEEeeCCeEEEEeccc-cc
Q 043767 45 DIASLEKFLQERIKVGG---KAGA-LGDTVTVTRDKTKITVLSDSN-FS 88 (105)
Q Consensus 45 d~a~FEkFL~erIKVnG---Ktgn-Lg~~V~i~r~k~kI~V~s~~p-fS 88 (105)
+..+||.||.. +=|+= +.++ +.-.+.|+.+++.+++.+..+ |.
T Consensus 14 ssENfdeymka-lGv~~~~Rk~~~~~kp~~~I~~~Gd~~tikt~s~~~k 61 (138)
T 3elx_A 14 SQEGYEPFCKL-IGIPDDVIAKGRDFKLVTEIVQNGDDFTWTQYYPNNH 61 (138)
T ss_dssp EEESHHHHHHH-TTCCHHHHHHTTTCCCEEEEEEETTEEEEEEEEGGGE
T ss_pred eccCHHHHHHH-hCCCHHHHhHHhcCCceEEEEEcCCEEEEEEEEcCCc
Confidence 35689999976 33321 2333 345788999999999988877 63
No 24
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=20.47 E-value=64 Score=22.19 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=27.3
Q ss_pred hhHHHHHhhcceeecc---ccCC-CCCeEEEEeeCCeEEEEec-ccc
Q 043767 46 IASLEKFLQERIKVGG---KAGA-LGDTVTVTRDKTKITVLSD-SNF 87 (105)
Q Consensus 46 ~a~FEkFL~erIKVnG---Ktgn-Lg~~V~i~r~k~kI~V~s~-~pf 87 (105)
..+||.||.. +=|+= +.++ +.-.+.|+.+++.+++.+. .+|
T Consensus 16 sENfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~tikt~~s~~ 61 (136)
T 2lba_A 16 DENYDDFVKK-IGLPADKIEMGRNCKIVTEVVQNGNDFTWTQHFPGG 61 (136)
T ss_dssp EESHHHHHHH-HTCCHHHHTTTSSCCCEEEECEETTEEEEEEECTTS
T ss_pred CcCHHHHHHH-hCCCHHHHHhhccCCcEEEEEEcCCEEEEEEEeCCC
Confidence 5679999974 22321 2223 3356889999999998887 665
Done!