Query 043768
Match_columns 98
No_of_seqs 107 out of 1390
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:10:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13499 EF-hand_7: EF-hand do 99.5 2.1E-13 4.5E-18 70.3 7.3 62 26-87 1-66 (66)
2 cd05022 S-100A13 S-100A13: S-1 99.5 2.6E-13 5.7E-18 73.9 7.7 68 24-91 7-77 (89)
3 COG5126 FRQ1 Ca2+-binding prot 99.5 3.3E-13 7.1E-18 80.2 8.2 69 20-88 87-155 (160)
4 smart00027 EH Eps15 homology d 99.5 1.3E-12 2.8E-17 72.1 9.5 74 23-98 8-83 (96)
5 cd05027 S-100B S-100B: S-100B 99.5 1.6E-12 3.4E-17 70.7 8.7 68 24-91 7-81 (88)
6 KOG0027 Calmodulin and related 99.4 3.8E-12 8.3E-17 75.5 8.3 66 23-88 83-148 (151)
7 cd05029 S-100A6 S-100A6: S-100 99.3 1.7E-11 3.8E-16 66.6 8.2 69 25-93 10-83 (88)
8 cd05025 S-100A1 S-100A1: S-100 99.3 2.8E-11 6E-16 66.3 8.9 68 24-91 8-82 (92)
9 cd05031 S-100A10_like S-100A10 99.3 2.3E-11 5E-16 66.9 8.5 68 24-91 7-81 (94)
10 cd05026 S-100Z S-100Z: S-100Z 99.3 1.5E-11 3.1E-16 67.6 7.5 68 24-91 9-83 (93)
11 KOG0027 Calmodulin and related 99.3 1.8E-11 4E-16 72.6 8.3 69 23-91 6-74 (151)
12 cd00052 EH Eps15 homology doma 99.3 5.1E-11 1.1E-15 61.2 8.0 62 28-91 2-63 (67)
13 cd00213 S-100 S-100: S-100 dom 99.3 1E-10 2.2E-15 63.4 8.3 68 24-91 7-81 (88)
14 PF13833 EF-hand_8: EF-hand do 99.2 6.8E-11 1.5E-15 58.6 6.6 52 38-89 1-53 (54)
15 cd00051 EFh EF-hand, calcium b 99.2 1.8E-10 4E-15 57.5 7.8 61 27-87 2-62 (63)
16 COG5126 FRQ1 Ca2+-binding prot 99.2 2.7E-10 5.9E-15 67.8 8.6 66 25-91 20-85 (160)
17 cd05023 S-100A11 S-100A11: S-1 99.2 4.2E-10 9.2E-15 61.3 7.7 69 24-92 8-83 (89)
18 PTZ00183 centrin; Provisional 99.1 7.8E-10 1.7E-14 65.4 9.1 68 22-89 14-81 (158)
19 PTZ00183 centrin; Provisional 99.1 8.3E-10 1.8E-14 65.2 9.0 67 22-88 87-153 (158)
20 PF14658 EF-hand_9: EF-hand do 99.1 4.6E-10 9.9E-15 57.4 6.7 62 29-90 2-65 (66)
21 KOG0028 Ca2+-binding protein ( 99.1 7.3E-10 1.6E-14 65.5 7.9 68 21-88 102-169 (172)
22 cd00252 SPARC_EC SPARC_EC; ext 99.1 9E-10 2E-14 62.7 7.8 63 22-88 45-107 (116)
23 cd05030 calgranulins Calgranul 99.1 1.8E-09 3.9E-14 58.7 7.8 70 24-93 7-83 (88)
24 PTZ00184 calmodulin; Provision 99.1 1.8E-09 4E-14 63.0 8.2 65 24-88 83-147 (149)
25 KOG0028 Ca2+-binding protein ( 99.1 1.7E-09 3.6E-14 64.0 7.6 65 25-89 33-97 (172)
26 PTZ00184 calmodulin; Provision 99.1 3.3E-09 7.2E-14 61.9 8.9 67 24-90 10-76 (149)
27 KOG0034 Ca2+/calmodulin-depend 99.0 2.4E-09 5.3E-14 65.5 7.8 68 22-89 101-175 (187)
28 KOG0037 Ca2+-binding protein, 99.0 3.8E-09 8.2E-14 65.3 8.3 66 26-91 125-190 (221)
29 KOG0044 Ca2+ sensor (EF-Hand s 98.9 4.4E-09 9.4E-14 64.6 6.6 67 27-93 66-132 (193)
30 KOG0030 Myosin essential light 98.9 2E-08 4.3E-13 58.3 7.9 73 20-92 6-80 (152)
31 KOG0031 Myosin regulatory ligh 98.9 2.5E-08 5.5E-13 58.7 8.0 71 18-88 94-164 (171)
32 PLN02964 phosphatidylserine de 98.8 3.8E-08 8.1E-13 69.7 8.9 63 27-89 181-243 (644)
33 KOG0037 Ca2+-binding protein, 98.8 9.1E-08 2E-12 59.3 7.8 71 23-93 55-126 (221)
34 KOG0041 Predicted Ca2+-binding 98.7 1E-07 2.2E-12 58.5 7.6 67 25-91 99-165 (244)
35 PF12763 EF-hand_4: Cytoskelet 98.7 2.2E-07 4.8E-12 52.0 8.1 69 20-91 5-73 (104)
36 PF14788 EF-hand_10: EF hand; 98.7 1.2E-07 2.6E-12 46.1 5.9 50 41-90 1-50 (51)
37 cd05024 S-100A10 S-100A10: A s 98.7 5.8E-07 1.2E-11 49.0 9.0 68 24-92 7-79 (91)
38 KOG0030 Myosin essential light 98.7 1.8E-07 3.8E-12 54.4 7.2 67 21-88 84-150 (152)
39 PF00036 EF-hand_1: EF hand; 98.6 5E-08 1.1E-12 42.3 3.2 26 63-88 2-27 (29)
40 PF00036 EF-hand_1: EF hand; 98.6 7.8E-08 1.7E-12 41.7 3.6 29 26-54 1-29 (29)
41 KOG0044 Ca2+ sensor (EF-Hand s 98.6 2.1E-07 4.6E-12 57.2 6.2 68 22-89 97-175 (193)
42 KOG0036 Predicted mitochondria 98.5 5.5E-07 1.2E-11 60.5 7.0 65 24-88 81-145 (463)
43 KOG0031 Myosin regulatory ligh 98.5 2.3E-06 5E-11 50.6 8.5 65 25-89 32-129 (171)
44 PLN02964 phosphatidylserine de 98.5 9.2E-07 2E-11 62.9 7.9 62 25-90 143-208 (644)
45 PF13405 EF-hand_6: EF-hand do 98.5 3.3E-07 7.1E-12 40.2 3.6 27 26-52 1-27 (31)
46 PRK12309 transaldolase/EF-hand 98.4 1.8E-06 3.9E-11 58.4 7.6 59 21-92 330-388 (391)
47 KOG0036 Predicted mitochondria 98.3 5.5E-06 1.2E-10 55.9 8.0 65 25-89 14-79 (463)
48 KOG0377 Protein serine/threoni 98.3 8.5E-06 1.8E-10 55.6 7.7 65 26-90 548-616 (631)
49 KOG0034 Ca2+/calmodulin-depend 98.2 1.1E-05 2.5E-10 49.5 7.6 64 28-91 69-134 (187)
50 KOG0038 Ca2+-binding kinase in 98.2 6.6E-06 1.4E-10 48.4 5.2 61 30-90 113-178 (189)
51 KOG0040 Ca2+-binding actin-bun 98.2 7.8E-06 1.7E-10 62.4 6.6 63 26-88 2254-2323(2399)
52 PF13202 EF-hand_5: EF hand; P 98.1 5.4E-06 1.2E-10 34.6 3.1 22 28-49 2-23 (25)
53 KOG0377 Protein serine/threoni 98.1 3.4E-05 7.3E-10 52.8 8.2 74 25-98 464-585 (631)
54 PF13202 EF-hand_5: EF hand; P 98.1 7.9E-06 1.7E-10 34.1 3.0 25 63-87 1-25 (25)
55 PF13405 EF-hand_6: EF-hand do 98.0 9.8E-06 2.1E-10 35.4 3.0 27 62-88 1-27 (31)
56 KOG0046 Ca2+-binding actin-bun 97.9 9.5E-05 2.1E-09 51.4 8.0 71 20-91 11-87 (627)
57 KOG4223 Reticulocalbin, calume 97.8 5E-05 1.1E-09 49.8 4.8 67 22-88 74-140 (325)
58 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.3E-05 2.7E-10 45.5 1.5 61 23-85 52-112 (113)
59 KOG0038 Ca2+-binding kinase in 97.7 0.00014 3E-09 43.0 5.0 67 28-94 74-141 (189)
60 PF13833 EF-hand_8: EF-hand do 97.6 0.00033 7.1E-09 34.2 4.7 32 22-53 22-53 (54)
61 KOG4251 Calcium binding protei 97.4 9.6E-05 2.1E-09 47.2 2.3 66 23-88 99-167 (362)
62 KOG4223 Reticulocalbin, calume 97.4 0.00024 5.2E-09 46.7 4.0 61 27-87 243-303 (325)
63 smart00054 EFh EF-hand, calciu 97.4 0.00029 6.3E-09 28.9 3.0 25 28-52 3-27 (29)
64 smart00054 EFh EF-hand, calciu 97.2 0.00047 1E-08 28.3 2.7 27 63-89 2-28 (29)
65 KOG1029 Endocytic adaptor prot 97.2 0.0014 3.1E-08 47.8 6.2 70 26-97 196-267 (1118)
66 PF09279 EF-hand_like: Phospho 97.0 0.003 6.4E-08 33.6 5.1 62 26-88 1-68 (83)
67 KOG2643 Ca2+ binding protein, 96.9 0.00071 1.5E-08 46.3 2.6 54 36-91 210-263 (489)
68 KOG1955 Ral-GTPase effector RA 96.9 0.0022 4.8E-08 44.8 4.8 68 28-97 234-303 (737)
69 PF13499 EF-hand_7: EF-hand do 96.9 0.0015 3.3E-08 33.0 3.2 29 63-91 2-30 (66)
70 KOG0042 Glycerol-3-phosphate d 96.7 0.01 2.2E-07 42.2 6.4 75 19-93 584-661 (680)
71 KOG4065 Uncharacterized conser 96.5 0.024 5.2E-07 32.4 6.0 65 22-86 63-142 (144)
72 KOG2562 Protein phosphatase 2 96.2 0.012 2.6E-07 40.7 4.7 64 27-90 313-380 (493)
73 cd05022 S-100A13 S-100A13: S-1 96.2 0.012 2.7E-07 31.9 4.0 30 25-54 47-76 (89)
74 cd05029 S-100A6 S-100A6: S-100 96.2 0.017 3.6E-07 31.3 4.4 35 20-54 46-80 (88)
75 cd05026 S-100Z S-100Z: S-100Z 96.2 0.019 4.1E-07 31.3 4.6 33 22-54 50-82 (93)
76 KOG2643 Ca2+ binding protein, 96.2 0.0044 9.4E-08 42.6 2.4 56 40-95 403-459 (489)
77 PF05042 Caleosin: Caleosin re 96.0 0.057 1.2E-06 32.9 6.4 65 25-89 7-124 (174)
78 KOG4666 Predicted phosphate ac 96.0 0.019 4.1E-07 38.3 4.7 65 23-88 294-358 (412)
79 cd05030 calgranulins Calgranul 95.9 0.026 5.7E-07 30.4 4.4 32 23-54 49-80 (88)
80 PF12763 EF-hand_4: Cytoskelet 95.9 0.026 5.6E-07 31.6 4.4 36 19-54 37-72 (104)
81 cd05025 S-100A1 S-100A1: S-100 95.9 0.027 5.9E-07 30.5 4.4 33 22-54 49-81 (92)
82 cd05023 S-100A11 S-100A11: S-1 95.9 0.027 5.9E-07 30.5 4.3 32 23-54 50-81 (89)
83 cd00252 SPARC_EC SPARC_EC; ext 95.8 0.019 4.2E-07 32.7 3.8 29 24-52 79-107 (116)
84 KOG2243 Ca2+ release channel ( 95.8 0.025 5.4E-07 44.5 5.2 60 29-89 4061-4120(5019)
85 cd05031 S-100A10_like S-100A10 95.8 0.023 4.9E-07 30.9 3.9 35 21-55 47-81 (94)
86 PF05517 p25-alpha: p25-alpha 95.8 0.14 3.1E-06 30.5 7.6 64 28-91 2-71 (154)
87 cd05027 S-100B S-100B: S-100B 95.7 0.036 7.8E-07 30.0 4.4 34 21-54 47-80 (88)
88 cd00052 EH Eps15 homology doma 95.7 0.035 7.6E-07 27.7 4.1 33 22-54 30-62 (67)
89 cd05024 S-100A10 S-100A10: A s 95.5 0.056 1.2E-06 29.5 4.6 33 22-54 45-77 (91)
90 PF14788 EF-hand_10: EF hand; 95.4 0.071 1.5E-06 26.0 4.3 35 20-54 16-50 (51)
91 cd00051 EFh EF-hand, calcium b 95.4 0.041 8.9E-07 26.3 3.7 28 63-90 2-29 (63)
92 smart00027 EH Eps15 homology d 95.3 0.045 9.8E-07 29.8 3.9 40 22-61 41-85 (96)
93 KOG0169 Phosphoinositide-speci 95.2 0.076 1.6E-06 38.9 5.8 66 25-90 136-201 (746)
94 PF14658 EF-hand_9: EF-hand do 95.1 0.081 1.8E-06 27.2 4.2 33 21-53 31-64 (66)
95 KOG0035 Ca2+-binding actin-bun 94.9 0.073 1.6E-06 39.8 4.9 68 22-89 744-816 (890)
96 KOG0751 Mitochondrial aspartat 94.6 0.28 6E-06 34.9 6.9 59 31-91 80-138 (694)
97 cd00213 S-100 S-100: S-100 dom 94.5 0.13 2.8E-06 27.4 4.4 33 22-54 48-80 (88)
98 KOG3555 Ca2+-binding proteogly 94.5 0.08 1.7E-06 35.7 4.0 62 24-89 249-310 (434)
99 KOG1029 Endocytic adaptor prot 94.4 0.49 1.1E-05 35.4 8.0 59 30-91 21-79 (1118)
100 KOG4251 Calcium binding protei 94.3 0.18 3.9E-06 32.7 5.1 59 27-85 283-341 (362)
101 KOG0041 Predicted Ca2+-binding 93.8 0.083 1.8E-06 33.1 2.9 30 62-91 100-129 (244)
102 KOG4347 GTPase-activating prot 93.6 0.12 2.6E-06 37.4 3.8 55 27-82 557-611 (671)
103 KOG4666 Predicted phosphate ac 93.5 0.36 7.8E-06 32.5 5.6 66 25-90 259-325 (412)
104 PF10591 SPARC_Ca_bdg: Secrete 92.6 0.21 4.6E-06 28.3 3.2 30 21-50 84-113 (113)
105 KOG0751 Mitochondrial aspartat 92.0 0.88 1.9E-05 32.5 6.1 64 27-90 110-208 (694)
106 KOG4578 Uncharacterized conser 91.9 0.16 3.6E-06 34.1 2.5 68 22-89 329-398 (421)
107 PF05042 Caleosin: Caleosin re 91.3 2.3 4.9E-05 26.1 8.0 67 20-87 91-164 (174)
108 PLN02952 phosphoinositide phos 90.4 1.5 3.3E-05 31.9 6.3 53 38-91 13-67 (599)
109 KOG2562 Protein phosphatase 2 90.4 0.86 1.9E-05 32.0 4.9 63 28-91 142-204 (493)
110 KOG3866 DNA-binding protein of 90.4 0.67 1.5E-05 31.1 4.2 59 30-88 249-323 (442)
111 PF08726 EFhand_Ca_insen: Ca2+ 90.1 0.44 9.6E-06 24.7 2.6 29 22-51 3-31 (69)
112 KOG0998 Synaptic vesicle prote 89.1 0.45 9.8E-06 35.9 3.0 74 22-97 8-83 (847)
113 PF07308 DUF1456: Protein of u 88.9 2 4.3E-05 22.1 4.5 46 43-88 15-60 (68)
114 PF09069 EF-hand_3: EF-hand; 88.9 2.5 5.4E-05 23.1 7.5 63 24-89 2-75 (90)
115 PRK12309 transaldolase/EF-hand 88.6 1.1 2.3E-05 31.0 4.3 30 55-84 328-357 (391)
116 PLN02228 Phosphoinositide phos 87.7 8.5 0.00018 28.1 8.4 66 21-88 20-91 (567)
117 KOG0998 Synaptic vesicle prote 86.8 0.36 7.9E-06 36.4 1.3 67 23-91 281-347 (847)
118 PF08414 NADPH_Ox: Respiratory 85.2 3 6.5E-05 23.2 4.1 61 26-91 31-94 (100)
119 KOG1955 Ral-GTPase effector RA 84.8 1.2 2.6E-05 31.8 3.0 36 18-53 258-293 (737)
120 PF14513 DAG_kinase_N: Diacylg 84.7 1.3 2.7E-05 26.2 2.6 49 39-89 5-60 (138)
121 PLN02222 phosphoinositide phos 84.2 11 0.00025 27.5 7.6 64 23-88 23-89 (581)
122 PLN02230 phosphoinositide phos 83.5 16 0.00034 27.0 8.3 67 21-88 25-101 (598)
123 KOG0040 Ca2+-binding actin-bun 82.5 5.6 0.00012 32.6 5.8 61 25-86 2296-2358(2399)
124 PF11116 DUF2624: Protein of u 80.7 7 0.00015 21.1 6.9 52 40-91 13-64 (85)
125 PF00404 Dockerin_1: Dockerin 79.8 3 6.6E-05 16.3 2.6 16 72-87 2-17 (21)
126 PF02761 Cbl_N2: CBL proto-onc 78.3 8.7 0.00019 20.8 5.8 55 39-93 20-74 (85)
127 PF08976 DUF1880: Domain of un 78.1 2.8 6E-05 24.0 2.4 31 58-88 4-34 (118)
128 KOG4286 Dystrophin-like protei 77.7 7.8 0.00017 29.3 5.0 64 25-89 470-533 (966)
129 KOG3555 Ca2+-binding proteogly 77.3 3.4 7.3E-05 28.3 3.0 63 25-87 211-276 (434)
130 cd07313 terB_like_2 tellurium 77.2 6.3 0.00014 21.4 3.7 50 39-88 13-64 (104)
131 KOG2871 Uncharacterized conser 75.6 3.7 8E-05 28.4 2.8 40 22-61 306-345 (449)
132 KOG0169 Phosphoinositide-speci 75.1 22 0.00048 26.8 6.7 65 23-91 170-234 (746)
133 KOG1707 Predicted Ras related/ 74.4 5.4 0.00012 29.1 3.5 32 25-56 315-346 (625)
134 KOG1954 Endocytosis/signaling 73.9 7.1 0.00015 27.3 3.9 58 28-88 447-504 (532)
135 PF12174 RST: RCD1-SRO-TAF4 (R 73.5 11 0.00023 19.5 4.0 48 40-90 7-54 (70)
136 PLN02952 phosphoinositide phos 69.2 44 0.00096 24.8 8.1 66 22-88 35-109 (599)
137 PLN02223 phosphoinositide phos 68.6 43 0.00094 24.4 8.0 67 21-88 12-91 (537)
138 TIGR01639 P_fal_TIGR01639 Plas 67.9 14 0.0003 18.5 3.9 45 41-90 9-53 (61)
139 PF09068 EF-hand_2: EF hand; 65.0 13 0.00028 21.6 3.2 24 28-51 100-123 (127)
140 KOG1265 Phospholipase C [Lipid 64.0 58 0.0012 25.6 7.0 65 24-88 220-298 (1189)
141 PF08461 HTH_12: Ribonuclease 63.2 16 0.00035 18.5 3.1 37 38-74 10-46 (66)
142 KOG4004 Matricellular protein 62.8 6.9 0.00015 24.8 1.9 55 31-87 193-248 (259)
143 KOG4403 Cell surface glycoprot 62.5 46 0.00099 23.8 5.9 65 21-89 64-129 (575)
144 KOG4301 Beta-dystrobrevin [Cyt 62.4 22 0.00049 24.4 4.3 64 27-91 112-175 (434)
145 TIGR03573 WbuX N-acetyl sugar 62.4 35 0.00076 23.1 5.4 31 40-70 301-331 (343)
146 PF09373 PMBR: Pseudomurein-bi 61.9 13 0.00028 16.1 2.3 17 75-91 2-18 (33)
147 KOG4347 GTPase-activating prot 59.8 24 0.00051 26.3 4.3 30 62-91 556-585 (671)
148 TIGR01848 PHA_reg_PhaR polyhyd 58.7 32 0.00069 19.5 5.1 55 33-87 11-75 (107)
149 PF01885 PTS_2-RNA: RNA 2'-pho 58.3 28 0.00061 21.5 4.1 36 36-71 27-62 (186)
150 COG4103 Uncharacterized protei 58.0 39 0.00084 20.2 4.7 58 29-89 34-94 (148)
151 PRK00819 RNA 2'-phosphotransfe 57.0 37 0.0008 21.0 4.4 36 36-71 28-63 (179)
152 PF03672 UPF0154: Uncharacteri 54.7 29 0.00062 17.7 3.9 33 38-70 28-60 (64)
153 KOG0506 Glutaminase (contains 54.0 57 0.0012 23.7 5.3 59 30-88 91-157 (622)
154 KOG3449 60S acidic ribosomal p 53.7 40 0.00087 19.2 5.3 44 28-71 4-47 (112)
155 KOG2301 Voltage-gated Ca2+ cha 53.7 18 0.00039 29.8 3.2 38 20-57 1412-1449(1592)
156 PF09336 Vps4_C: Vps4 C termin 53.7 23 0.0005 17.8 2.7 26 41-66 29-54 (62)
157 PRK00523 hypothetical protein; 53.0 33 0.00071 17.9 3.9 32 39-70 37-68 (72)
158 KOG1707 Predicted Ras related/ 53.0 50 0.0011 24.5 5.0 45 25-69 195-240 (625)
159 PF03979 Sigma70_r1_1: Sigma-7 53.0 20 0.00043 18.9 2.5 46 25-74 7-52 (82)
160 KOG0039 Ferric reductase, NADH 46.4 69 0.0015 23.9 5.1 68 20-88 13-88 (646)
161 PRK09430 djlA Dna-J like membr 44.4 90 0.0019 20.5 5.1 52 37-89 67-120 (267)
162 PF01023 S_100: S-100/ICaBP ty 43.9 36 0.00078 15.8 3.8 29 25-53 6-36 (44)
163 PF04157 EAP30: EAP30/Vps36 fa 43.9 82 0.0018 19.9 6.0 48 27-74 99-149 (223)
164 PRK01844 hypothetical protein; 43.8 49 0.0011 17.3 3.9 32 39-70 36-67 (72)
165 KOG0455 Homoserine dehydrogena 43.7 50 0.0011 22.0 3.6 32 62-96 179-210 (364)
166 COG3763 Uncharacterized protei 43.7 49 0.0011 17.2 4.1 33 38-70 35-67 (71)
167 TIGR00959 ffh signal recogniti 43.6 51 0.0011 23.3 3.9 33 59-94 311-343 (428)
168 PRK10867 signal recognition pa 43.4 51 0.0011 23.3 3.9 33 59-94 312-344 (433)
169 TIGR01425 SRP54_euk signal rec 42.8 44 0.00095 23.7 3.5 30 62-94 314-343 (429)
170 PF07879 PHB_acc_N: PHB/PHA ac 42.7 48 0.001 16.9 3.2 21 33-53 11-31 (64)
171 PRK00771 signal recognition pa 41.9 54 0.0012 23.2 3.9 30 62-94 307-336 (437)
172 COG0541 Ffh Signal recognition 41.5 50 0.0011 23.5 3.6 47 45-94 297-343 (451)
173 PF11829 DUF3349: Protein of u 41.4 59 0.0013 18.0 3.2 29 42-70 20-48 (96)
174 COG1460 Uncharacterized protei 38.9 78 0.0017 18.2 3.5 13 79-91 97-109 (114)
175 PF11593 Med3: Mediator comple 38.0 1.3E+02 0.0028 21.0 5.0 10 23-32 9-18 (379)
176 KOG2419 Phosphatidylserine dec 37.7 21 0.00045 26.8 1.4 62 28-89 440-533 (975)
177 PLN02230 phosphoinositide phos 37.1 65 0.0014 23.9 3.7 32 59-91 27-58 (598)
178 PF10437 Lip_prot_lig_C: Bacte 36.5 68 0.0015 16.8 4.6 42 44-87 44-86 (86)
179 PF14178 YppF: YppF-like prote 35.6 60 0.0013 16.3 2.5 19 76-94 35-53 (60)
180 PTZ00373 60S Acidic ribosomal 34.5 92 0.002 17.8 5.4 42 30-71 8-49 (112)
181 KOG4070 Putative signal transd 34.1 98 0.0021 18.9 3.6 65 27-91 14-87 (180)
182 TIGR02675 tape_meas_nterm tape 33.4 72 0.0016 16.5 2.7 16 38-53 27-42 (75)
183 cd06562 GH20_HexA_HexB-like Be 33.3 93 0.002 21.2 3.9 25 73-97 62-86 (348)
184 PF07624 PSD2: Protein of unkn 33.1 76 0.0017 16.4 5.0 12 42-53 7-18 (76)
185 PF07492 Trehalase_Ca-bi: Neut 32.9 9.9 0.00021 16.3 -0.5 17 65-81 3-19 (30)
186 COG5562 Phage envelope protein 31.9 20 0.00043 21.2 0.5 26 66-91 77-102 (137)
187 PF04614 Pex19: Pex19 protein 31.8 1.5E+02 0.0032 19.3 4.7 54 37-96 158-214 (248)
188 COG1856 Uncharacterized homolo 31.4 56 0.0012 21.4 2.4 27 72-98 65-92 (275)
189 PHA00003 B internal scaffoldin 30.7 61 0.0013 18.4 2.2 53 42-95 65-119 (120)
190 KOG3330 Transport protein part 30.6 33 0.00071 20.9 1.2 17 81-97 37-53 (183)
191 cd00086 homeodomain Homeodomai 30.0 69 0.0015 14.9 5.3 38 25-69 13-50 (59)
192 COG0848 ExbD Biopolymer transp 29.9 80 0.0017 18.5 2.8 24 73-96 103-126 (137)
193 KOG1785 Tyrosine kinase negati 29.6 1.9E+02 0.0042 20.7 4.8 45 39-83 188-232 (563)
194 PF05099 TerB: Tellurite resis 29.4 27 0.00059 19.9 0.8 17 38-54 36-52 (140)
195 cd06403 PB1_Par6 The PB1 domai 27.9 36 0.00079 18.2 1.0 24 68-91 12-35 (80)
196 PHA02105 hypothetical protein 27.3 93 0.002 15.6 3.1 51 41-91 4-59 (68)
197 PRK14981 DNA-directed RNA poly 27.1 1.3E+02 0.0027 17.0 3.8 32 58-93 79-110 (112)
198 PF15017 AF1Q: Drug resistance 26.5 41 0.0009 18.3 1.1 15 36-50 70-84 (87)
199 PF03874 RNA_pol_Rpb4: RNA pol 26.3 1E+02 0.0022 17.1 2.8 60 24-92 56-115 (117)
200 COG2008 GLY1 Threonine aldolas 26.2 50 0.0011 22.7 1.6 21 33-53 103-123 (342)
201 PF00046 Homeobox: Homeobox do 26.1 85 0.0019 14.7 5.9 29 39-69 22-50 (57)
202 COG2818 Tag 3-methyladenine DN 25.6 81 0.0018 19.8 2.3 32 25-56 55-86 (188)
203 KOG2871 Uncharacterized conser 25.5 90 0.002 22.0 2.7 31 60-90 308-338 (449)
204 KOG4403 Cell surface glycoprot 24.7 1.1E+02 0.0024 22.0 3.0 55 37-91 40-98 (575)
205 KOG3741 Poly(A) ribonuclease s 24.6 1.2E+02 0.0025 22.7 3.2 58 30-92 591-650 (655)
206 PF02617 ClpS: ATP-dependent C 24.6 1.1E+02 0.0023 16.0 2.5 39 39-78 14-52 (82)
207 cd08324 CARD_NOD1_CARD4 Caspas 24.5 1.3E+02 0.0028 16.3 5.4 50 37-91 25-74 (85)
208 smart00642 Aamy Alpha-amylase 24.2 1.5E+02 0.0032 17.8 3.3 26 71-96 9-34 (166)
209 KOG0046 Ca2+-binding actin-bun 23.7 1.6E+02 0.0034 21.9 3.7 34 21-54 53-86 (627)
210 cd08032 LARP_7 La RNA-binding 23.7 1.1E+02 0.0024 16.3 2.4 15 67-81 29-43 (82)
211 PF07499 RuvA_C: RuvA, C-termi 23.5 95 0.0021 14.4 4.0 34 45-82 4-37 (47)
212 PF06784 UPF0240: Uncharacteri 23.5 1.9E+02 0.0042 17.9 4.1 50 37-92 113-162 (179)
213 PF06648 DUF1160: Protein of u 23.4 1.6E+02 0.0036 17.0 4.2 46 25-73 37-83 (122)
214 PF06226 DUF1007: Protein of u 22.8 1.1E+02 0.0024 19.3 2.6 25 30-54 55-79 (212)
215 cd05833 Ribosomal_P2 Ribosomal 22.1 1.6E+02 0.0036 16.6 5.4 42 30-71 6-47 (109)
216 KOG1954 Endocytosis/signaling 21.9 1.5E+02 0.0032 21.2 3.2 32 21-52 473-504 (532)
217 PRK03170 dihydrodipicolinate s 21.7 1.4E+02 0.0031 19.5 3.1 19 75-93 16-34 (292)
218 PF05383 La: La domain; Inter 21.5 1.2E+02 0.0027 15.0 2.2 19 31-49 21-39 (61)
219 cd00408 DHDPS-like Dihydrodipi 21.3 1.5E+02 0.0032 19.2 3.1 16 76-91 13-28 (281)
220 cd00950 DHDPS Dihydrodipicolin 21.2 1.5E+02 0.0032 19.3 3.1 17 76-92 16-32 (284)
221 COG3383 Uncharacterized anaero 21.1 2.6E+02 0.0057 22.0 4.5 37 23-59 712-748 (978)
222 cd08330 CARD_ASC_NALP1 Caspase 21.0 1.5E+02 0.0032 15.6 4.4 49 38-91 26-74 (82)
223 TIGR03249 KdgD 5-dehydro-4-deo 20.9 1.5E+02 0.0033 19.5 3.1 16 76-91 21-36 (296)
224 TIGR00674 dapA dihydrodipicoli 20.8 1.5E+02 0.0033 19.3 3.1 16 76-91 14-29 (285)
225 cd00951 KDGDH 5-dehydro-4-deox 20.5 1.6E+02 0.0034 19.4 3.1 16 76-91 16-31 (289)
226 PF13331 DUF4093: Domain of un 20.3 1.6E+02 0.0035 15.8 3.3 10 78-87 77-86 (87)
227 PLN02417 dihydrodipicolinate s 20.0 1.7E+02 0.0036 19.2 3.1 16 76-91 17-32 (280)
No 1
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.50 E-value=2.1e-13 Score=70.29 Aligned_cols=62 Identities=32% Similarity=0.491 Sum_probs=54.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHH----HHHHHHHhhCCCCCCcccHHHHHHHH
Q 043768 26 QLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGW----RAKRALRYADDNGDGFLADKEIDELV 87 (98)
Q Consensus 26 ~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~ef~~~l 87 (98)
+++++|..+|.+++|+|+.+||..++..++...+.. .+..+|+.+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999988665554 45556999999999999999998764
No 2
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.49 E-value=2.6e-13 Score=73.86 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhcC-CCCCcccHHHHHHHHHh-hCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 24 KEQLKGMFWRCDK-NGDGRLSRQELEDAFSY-LGAYIPG-WRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 24 ~~~l~~~f~~~d~-~~~g~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
...+..+|+.||+ +++|+|+..||+.++.. ++..++. .+++.+++.+|.+++|.|+|+||..++..+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3567999999999 99999999999999998 8766777 8999999999999999999999999998875
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.49 E-value=3.3e-13 Score=80.22 Aligned_cols=69 Identities=29% Similarity=0.422 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 20 IPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 20 ~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
.....+++.++|+.||++++|+|+..+|..++..++...+++++..+++.+|.+++|.|++++|...+.
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 456688899999999999999999999999999999999999999999999999999999999998875
No 4
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.47 E-value=1.3e-12 Score=72.11 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=66.4
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH--hcCCccC
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA--QFGYTLS 98 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~--~~g~~~~ 98 (98)
....+..+|..+|.+++|.|+..++..+++..+ ++.+++..++..+|.+++|.|++++|..++..+. ++|.+|+
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~ 83 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIP 83 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCC
Confidence 345689999999999999999999999999864 7888999999999999999999999999999886 6788874
No 5
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.45 E-value=1.6e-12 Score=70.73 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 24 KEQLKGMFWRCD-KNGDG-RLSRQELEDAFSY-----LGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 24 ~~~l~~~f~~~d-~~~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
...+.++|..+| ++++| +|+..+|+.+++. ++...++.++..+++.+|.+++|.|+|++|..++..+.
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 356899999998 79999 6999999999998 78888889999999999999999999999999998765
No 6
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.39 E-value=3.8e-12 Score=75.45 Aligned_cols=66 Identities=32% Similarity=0.484 Sum_probs=62.7
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
..+.+.++|+.+|++++|+|+..+|+.++..++...+.+++..+++.+|.+++|.|+|++|+..+.
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999999999999999999998875
No 7
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.34 E-value=1.7e-11 Score=66.64 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=61.1
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHh---hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhc
Q 043768 25 EQLKGMFWRCDK-NG-DGRLSRQELEDAFSY---LGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQF 93 (98)
Q Consensus 25 ~~l~~~f~~~d~-~~-~g~i~~~el~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 93 (98)
..+-.+|..|+. ++ +|+|+.+||+.++.. ++..++.+++.++++.+|.+++|.|+|+||..++..+.+.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 456888999997 56 899999999999963 5888899999999999999999999999999999988653
No 8
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.33 E-value=2.8e-11 Score=66.29 Aligned_cols=68 Identities=31% Similarity=0.370 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhc-CCCCCc-ccHHHHHHHHHh-hC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 24 KEQLKGMFWRCD-KNGDGR-LSRQELEDAFSY-LG----AYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 24 ~~~l~~~f~~~d-~~~~g~-i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
.+.+.++|..+| .+++|+ |+..+|+.+++. ++ ..++..++..++..+|.+++|.|++++|..++..+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 467899999997 999994 999999999975 43 345788999999999999999999999999998765
No 9
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.33 E-value=2.3e-11 Score=66.87 Aligned_cols=68 Identities=26% Similarity=0.278 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhcC-CC-CCcccHHHHHHHHHh-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 24 KEQLKGMFWRCDK-NG-DGRLSRQELEDAFSY-----LGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 24 ~~~l~~~f~~~d~-~~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
...+..+|..+|. ++ +|+|+..||..++.. ++..++..++..++..+|.+++|.|++++|..++....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4568999999997 87 699999999999986 45567889999999999999999999999999887643
No 10
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.33 E-value=1.5e-11 Score=67.60 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHhh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 24 KEQLKGMFWRCD-KNGDG-RLSRQELEDAFSYL-----GAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 24 ~~~l~~~f~~~d-~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
...+.++|..|| ++++| .|+..||+.++... ....+..++..++..+|.+++|.|+|+||..++..+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 345788899999 78998 59999999999762 3334777899999999999999999999999998765
No 11
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.32 E-value=1.8e-11 Score=72.55 Aligned_cols=69 Identities=28% Similarity=0.362 Sum_probs=64.6
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
...++..+|..+|++++|+|+..+|..+++.++..++..++..++..+|.+++|.|++++|..++....
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 346789999999999999999999999999999999999999999999999999999999999998654
No 12
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.29 E-value=5.1e-11 Score=61.19 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=56.4
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 28 KGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 28 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
+++|..+|++++|.|+..|+..++..++ .+.+++..++..+|.+++|.|++++|..++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999999999876 4788899999999999999999999999987654
No 13
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.26 E-value=1e-10 Score=63.45 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhcC--CCCCcccHHHHHHHHHh-hCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 24 KEQLKGMFWRCDK--NGDGRLSRQELEDAFSY-LGAY----IPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 24 ~~~l~~~f~~~d~--~~~g~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
.+.+..+|..+|+ +++|.|+..+|..++.. ++.. .+..++..++..+|.+++|.|++++|..++..+.
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4568899999999 89999999999999975 4433 3588999999999999999999999999988765
No 14
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.24 E-value=6.8e-11 Score=58.56 Aligned_cols=52 Identities=29% Similarity=0.518 Sum_probs=48.5
Q ss_pred CCCcccHHHHHHHHHhhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 38 GDGRLSRQELEDAFSYLGAY-IPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
++|.|+.++|..++..++.. ++..++..+|..+|.+++|.|+++||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888888 99999999999999999999999999998864
No 15
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.22 E-value=1.8e-10 Score=57.47 Aligned_cols=61 Identities=34% Similarity=0.505 Sum_probs=56.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 043768 27 LKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELV 87 (98)
Q Consensus 27 l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 87 (98)
+..+|..+|.+++|.|+..++..++..++.+.+...+..+|..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999988999999999999999999999999998765
No 16
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.19 E-value=2.7e-10 Score=67.82 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=59.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
.+++++|..+|++++|.|+..+|..+++.++..++..++.+++..+|. +++.|+|.+|..+|....
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 457999999999999999999999999999999999899999999888 888899998888887644
No 17
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.16 E-value=4.2e-10 Score=61.30 Aligned_cols=69 Identities=26% Similarity=0.239 Sum_probs=58.5
Q ss_pred HHHHHHHHHh-hcCCCCC-cccHHHHHHHHHhh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh
Q 043768 24 KEQLKGMFWR-CDKNGDG-RLSRQELEDAFSYL-----GAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQ 92 (98)
Q Consensus 24 ~~~l~~~f~~-~d~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 92 (98)
...+..+|+. +|++++| .|+..||+.++... +......++..+++.+|.+++|.|+|+||..++..+..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 4567889998 7777876 99999999999874 33456788999999999999999999999999988763
No 18
>PTZ00183 centrin; Provisional
Probab=99.15 E-value=7.8e-10 Score=65.36 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=59.9
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
....++..+|..+|++++|.|+..+|..++..++..++...+..++..+|.+++|.|++++|..++..
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 44456899999999999999999999999998887788888999999999999999999999887754
No 19
>PTZ00183 centrin; Provisional
Probab=99.14 E-value=8.3e-10 Score=65.23 Aligned_cols=67 Identities=25% Similarity=0.392 Sum_probs=59.0
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
...+.+..+|..+|.+++|+|+..+|..++..++..++..++..+|..+|.+++|.|++++|..++.
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 3456788899999999999999999999998888888888999999999999999999999988875
No 20
>PF14658 EF-hand_9: EF-hand domain
Probab=99.14 E-value=4.6e-10 Score=57.42 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=57.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhhCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHHH
Q 043768 29 GMFWRCDKNGDGRLSRQELEDAFSYLGA-YIPGWRAKRALRYADDNGD-GFLADKEIDELVKYA 90 (98)
Q Consensus 29 ~~f~~~d~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~~ 90 (98)
.+|..||+++.|.+...++..+|+..+. .+.+++++.+...+|+++. |.|+++.|..+|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3689999999999999999999999887 8889999999999999999 999999999998743
No 21
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=7.3e-10 Score=65.46 Aligned_cols=68 Identities=26% Similarity=0.401 Sum_probs=63.9
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
..+.+++..+|+.+|.+.+|+|+..+|+.+...++..++++++..++..+|.+++|.|+-++|...+.
T Consensus 102 ~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 102 RDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred cCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 34778899999999999999999999999999999999999999999999999999999999988876
No 22
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.11 E-value=9e-10 Score=62.69 Aligned_cols=63 Identities=25% Similarity=0.159 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
.-...+..+|..+|.+++|.|+..||..+. .......+..+|..+|.+++|.|+++||..++.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 344668999999999999999999999876 235567788999999999999999999999983
No 23
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.07 E-value=1.8e-09 Score=58.70 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcCC--CCCcccHHHHHHHHH-hhCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhc
Q 043768 24 KEQLKGMFWRCDKN--GDGRLSRQELEDAFS-YLGAYIP----GWRAKRALRYADDNGDGFLADKEIDELVKYAAQF 93 (98)
Q Consensus 24 ~~~l~~~f~~~d~~--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 93 (98)
...+-..|..++.. ++|.|+..||+.++. .++..++ ..++..+|..+|.+++|.|+|++|..++..+.+.
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 34567889999865 479999999999997 4454455 8899999999999999999999999999877643
No 24
>PTZ00184 calmodulin; Provisional
Probab=99.07 E-value=1.8e-09 Score=63.02 Aligned_cols=65 Identities=28% Similarity=0.458 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 24 KEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 24 ~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
.+.+..+|..+|.+++|+|+..++..++...+..++...+..++..+|.+++|.|+++||..++.
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 34567778888888888888888888887777777777788888888888888888888877653
No 25
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=1.7e-09 Score=63.96 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=60.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
..++..|..+|+++.|+|+..||..+++.+|..+...++.+++..+|..+.|.|++++|..++..
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999998764
No 26
>PTZ00184 calmodulin; Provisional
Probab=99.05 E-value=3.3e-09 Score=61.90 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 24 KEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 24 ~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
.+.+...|..+|.+++|.|+..+|..++..++..++...+..++..+|.+++|.|++++|..++...
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 3457888888898889999999998888887777777788888888888888889998888877643
No 27
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.03 E-value=2.4e-09 Score=65.47 Aligned_cols=68 Identities=28% Similarity=0.408 Sum_probs=57.2
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh-CCCCC--HH----HHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL-GAYIP--GW----RAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~--~~----~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
...++++.+|+.||.+++|+|+.+|+.+++..+ +...+ .+ .++.++..+|.+++|.|+++||..++..
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 344689999999999999999999999999876 33333 33 3677899999999999999999999875
No 28
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.02 E-value=3.8e-09 Score=65.27 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=61.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 26 QLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 26 ~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
+++.+|..+|.|+.|.|+..||+++|..++..++..-...+++.+|..++|.|.|++|.+++..++
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999988899999999999988765
No 29
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.94 E-value=4.4e-09 Score=64.56 Aligned_cols=67 Identities=28% Similarity=0.328 Sum_probs=60.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhc
Q 043768 27 LKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQF 93 (98)
Q Consensus 27 l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 93 (98)
...+|..+|.+++|.|++.||..++..+..+..++.+..+|+.+|.+++|.|+.+|+..++..++++
T Consensus 66 ~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m 132 (193)
T KOG0044|consen 66 AELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQM 132 (193)
T ss_pred HHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHH
Confidence 4788999999999999999999999988888888889999999999999999999999999988753
No 30
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.90 E-value=2e-08 Score=58.26 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=64.8
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHHHHHh
Q 043768 20 IPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDN--GDGFLADKEIDELVKYAAQ 92 (98)
Q Consensus 20 ~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~l~~~~~ 92 (98)
.....++++.+|..||..++|+|+..++..+++.++..+++.++.+....++.+ +..+|+|++|..++..+.+
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 345568899999999999999999999999999999999999999999998887 4467999999999887763
No 31
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.88 E-value=2.5e-08 Score=58.73 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=65.9
Q ss_pred CCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 18 ASIPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 18 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
.....+++.+..+|..||+++.|.|....|+.+|...+.+.+.+++..+|..+-.+..|.+++..|..++.
T Consensus 94 L~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 94 LNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred hcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 35567788899999999999999999999999999999999999999999999999999999999988875
No 32
>PLN02964 phosphatidylserine decarboxylase
Probab=98.83 E-value=3.8e-08 Score=69.70 Aligned_cols=63 Identities=25% Similarity=0.406 Sum_probs=58.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 27 LKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 27 l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
+.++|..+|.+++|.|+..||..++..++...+++++..+|+.+|.+++|.|+++||..++..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 789999999999999999999999998887788889999999999999999999999999875
No 33
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.75 E-value=9.1e-08 Score=59.26 Aligned_cols=71 Identities=28% Similarity=0.335 Sum_probs=62.8
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhc
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL-GAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQF 93 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 93 (98)
....+...|...|++..|.|+.+||..++... ....+.+.++-++..+|.+.+|+|.++||..+++++.+|
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~W 126 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQW 126 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999843 456788899999999999999999999999999998766
No 34
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.74 E-value=1e-07 Score=58.52 Aligned_cols=67 Identities=27% Similarity=0.327 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
..+..+|..+|.+.||+|+..||+.++..++.+-+.-.+..+++.+|.|.+|.|+|-+|.-++..+.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 3468889999999999999999999999999988888999999999999999999999988776543
No 35
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.72 E-value=2.2e-07 Score=51.95 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=58.8
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 20 IPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 20 ~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
..........+|..+++ .+|+|+..+...++..++ ++.+.+..+|...|.+.+|+++++||+-.++.+.
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 34455678899999886 579999999999988875 7889999999999999999999999999988764
No 36
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.71 E-value=1.2e-07 Score=46.06 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=41.8
Q ss_pred cccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 41 RLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 41 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
++++.|++.+++.++..+++..+..+|+.+|.+++|.++.+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999998765
No 37
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.70 E-value=5.8e-07 Score=48.97 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHh-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh
Q 043768 24 KEQLKGMFWRCDKNGDGRLSRQELEDAFSY-----LGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQ 92 (98)
Q Consensus 24 ~~~l~~~f~~~d~~~~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 92 (98)
...+-.+|..|. .+.+.++..||+.++.. +...-....+..+++.+|.+++|.|+|.||..++..+..
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 345678899987 55679999999999964 233345678999999999999999999999999987753
No 38
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.69 E-value=1.8e-07 Score=54.38 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
....+++-+-++.||++++|+|...+|+.+|..+|..++++++..++.-.. |.+|.|+|++|+.-+.
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 456677888999999999999999999999999999999999999987755 6689999999987653
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.65 E-value=5e-08 Score=42.32 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=13.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 63 AKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 63 ~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
++.+|+.+|.|++|.|+++||..++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34455555555555555555555443
No 40
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.63 E-value=7.8e-08 Score=41.69 Aligned_cols=29 Identities=34% Similarity=0.659 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 26 QLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 26 ~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
++..+|..+|++++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 47889999999999999999999998763
No 41
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.60 E-value=2.1e-07 Score=57.18 Aligned_cols=68 Identities=29% Similarity=0.364 Sum_probs=55.3
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh----CC-------CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL----GA-------YIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
-.++.+...|+.+|.+++|+|+..|+..+++.+ +. ..+.+-+..+|..+|.+.+|.|+++||......
T Consensus 97 t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 345667888999999999999999988888753 21 123456889999999999999999999988764
No 42
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.52 E-value=5.5e-07 Score=60.49 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 24 KEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 24 ~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
+.++.++|..+|.+.+|.|+.+|+...++.++..++.+++.++++-.|.++++.|+++|+.+.+.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 34678999999999999999999999999999999999999999999999999999999987754
No 43
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.50 E-value=2.3e-06 Score=50.61 Aligned_cols=65 Identities=26% Similarity=0.419 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHH---------------------------------HHHHHHHhhC
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGW---------------------------------RAKRALRYAD 71 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~---------------------------------~~~~~~~~~d 71 (98)
.+++++|...|.+.+|.|+.++|+..+.++|..++++ .+...|+.+|
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD 111 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFD 111 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Confidence 4579999999999999999999999999988776543 3566788888
Q ss_pred CCCCCcccHHHHHHHHHH
Q 043768 72 DNGDGFLADKEIDELVKY 89 (98)
Q Consensus 72 ~~~~g~i~~~ef~~~l~~ 89 (98)
.++.|.|.-+.+..+|..
T Consensus 112 ~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 112 DEGSGKIDEDYLRELLTT 129 (171)
T ss_pred ccCCCccCHHHHHHHHHH
Confidence 888888888888887764
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.49 E-value=9.2e-07 Score=62.86 Aligned_cols=62 Identities=23% Similarity=0.202 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhC-CCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLG-AYIPGWR---AKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
+++.+.|..+|++++|++ +..+++.++ ..+++.+ ++.+|..+|.+++|.|+++||..++..+
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 568899999999999997 888889888 4777776 7999999999999999999999998854
No 45
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.48 E-value=3.3e-07 Score=40.23 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=20.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH
Q 043768 26 QLKGMFWRCDKNGDGRLSRQELEDAFS 52 (98)
Q Consensus 26 ~l~~~f~~~d~~~~g~i~~~el~~~l~ 52 (98)
+++.+|..+|.+++|+|+.+||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 366778888888888888888888777
No 46
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.42 E-value=1.8e-06 Score=58.37 Aligned_cols=59 Identities=22% Similarity=0.270 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQ 92 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 92 (98)
......+..+|..+|.+++|.|+.+||.. +..+|..+|.+++|.|+++||...+....+
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 34556789999999999999999999841 467899999999999999999999886554
No 47
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.32 E-value=5.5e-06 Score=55.85 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAY-IPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
.+++.+|..+|.+++|.++..++.+.+..+..+ +..+....++...|.+.+|.++++||...+..
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 457999999999999999999999999988766 66677888999999999999999999988764
No 48
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.25 E-value=8.5e-06 Score=55.61 Aligned_cols=65 Identities=25% Similarity=0.274 Sum_probs=57.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhh----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 26 QLKGMFWRCDKNGDGRLSRQELEDAFSYL----GAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 26 ~l~~~f~~~d~~~~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
.+..+|+.+|+|+.|.|+.+||..++..+ ...++.+++.++=+..|.+++|.|++.||...+.-+
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 36889999999999999999999988765 455788899999999999999999999999988654
No 49
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.24 E-value=1.1e-05 Score=49.46 Aligned_cols=64 Identities=22% Similarity=0.428 Sum_probs=47.1
Q ss_pred HHHHHhhcCCCCCc-ccHHHHHHHHHhhCCCCCHH-HHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 28 KGMFWRCDKNGDGR-LSRQELEDAFSYLGAYIPGW-RAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 28 ~~~f~~~d~~~~g~-i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
.+++..++.+++|. |++++|..++..+....+.. .++-+|+.+|.+++|.|+.+|+..++..+-
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~ 134 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV 134 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence 45555666666655 77777777776665444444 688899999999999999999999887653
No 50
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.17 E-value=6.6e-06 Score=48.43 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=42.9
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhC-CCCCHHH----HHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 30 MFWRCDKNGDGRLSRQELEDAFSYLG-AYIPGWR----AKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 30 ~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
+|+.+|-++++.|-..+|...+..+. ..++.++ +++++.++|.+|+|.+++.+|.+++.+.
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 34555556666666666666555442 2355555 5678999999999999999999998763
No 51
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.16 E-value=7.8e-06 Score=62.36 Aligned_cols=63 Identities=25% Similarity=0.416 Sum_probs=56.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCC-------HHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 26 QLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIP-------GWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 26 ~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
++.-+|..||++.+|+++.++|..|++.+|+.+| +.++..++..+|++.+|+|+..+|..+|.
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 3566899999999999999999999999987763 34789999999999999999999999886
No 52
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.12 E-value=5.4e-06 Score=34.60 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=11.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHH
Q 043768 28 KGMFWRCDKNGDGRLSRQELED 49 (98)
Q Consensus 28 ~~~f~~~d~~~~g~i~~~el~~ 49 (98)
+++|..+|.+++|.|+.+||..
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 3445555555555555555544
No 53
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.10 E-value=3.4e-05 Score=52.78 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhh-CCCCC--------------------------------------------
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYL-GAYIP-------------------------------------------- 59 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~-------------------------------------------- 59 (98)
.++...|+.+|+++.|+|+...+..+++.. +.+++
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 457889999999999999999999998753 33322
Q ss_pred --HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH-hcCCccC
Q 043768 60 --GWRAKRALRYADDNGDGFLADKEIDELVKYAA-QFGYTLS 98 (98)
Q Consensus 60 --~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~-~~g~~~~ 98 (98)
.+.++.+|+..|.|.+|.|+.+||...+.-+. ++...|+
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~ 585 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAIS 585 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcC
Confidence 12356689999999999999999999999876 6766553
No 54
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.06 E-value=7.9e-06 Score=34.07 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q 043768 63 AKRALRYADDNGDGFLADKEIDELV 87 (98)
Q Consensus 63 ~~~~~~~~d~~~~g~i~~~ef~~~l 87 (98)
++.+|..+|.+++|.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568999999999999999998864
No 55
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.01 E-value=9.8e-06 Score=35.41 Aligned_cols=27 Identities=30% Similarity=0.693 Sum_probs=23.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 62 RAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 62 ~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
+++.+|+.+|.+++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999999987
No 56
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.93 E-value=9.5e-05 Score=51.44 Aligned_cols=71 Identities=24% Similarity=0.200 Sum_probs=59.2
Q ss_pred CCCcHHH---HHHHHHhhcCCCCCcccHHHHHHHHHhhCCC---CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 20 IPYTKEQ---LKGMFWRCDKNGDGRLSRQELEDAFSYLGAY---IPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 20 ~~~~~~~---l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
...++++ +...|...| +++|+++..++..++...+.. ..+++++.++...+.+.+|.|+|++|..++..+.
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 3445554 577799998 999999999999999886543 3478899999999999999999999999877765
No 57
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=5e-05 Score=49.80 Aligned_cols=67 Identities=22% Similarity=0.172 Sum_probs=58.8
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
.+.+++.+++..+|.+++|.|+..++..++..+.......++..-|..+|.+.+|.|+|+++...+.
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 4667899999999999999999999999998876666677788889999999999999999877654
No 58
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.77 E-value=1.3e-05 Score=45.53 Aligned_cols=61 Identities=31% Similarity=0.321 Sum_probs=43.9
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDE 85 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 85 (98)
-...+...|..+|.+++|.++..|+..+...+ ..++.=++.+++..|.++++.|++.|...
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34557888999999999999999988776644 24444578899999999999999998764
No 59
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.69 E-value=0.00014 Score=42.99 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=55.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHH-HHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcC
Q 043768 28 KGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGW-RAKRALRYADDNGDGFLADKEIDELVKYAAQFG 94 (98)
Q Consensus 28 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~g 94 (98)
+++...|-.|+.|.+++++|..++..++...+.+ .+...|+.+|-++++.|.-+++...+..+.+-+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~e 141 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDE 141 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhcc
Confidence 4555667779999999999999998876655543 577789999999999999999999998876544
No 60
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.57 E-value=0.00033 Score=34.20 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSY 53 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~ 53 (98)
.+.+++..+|..+|.+++|+|+..||..++..
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 77788999999999999999999999988763
No 61
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.45 E-value=9.6e-05 Score=47.19 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=49.7
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh-CCC--CCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL-GAY--IPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~--~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
+.+.+..+|...|.+.+|+|+..|++.++..- ..- -+.++-+-.|..+|++++|.|+|+||.--+.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 34568999999999999999999998887542 110 1112334468999999999999999976544
No 62
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.00024 Score=46.70 Aligned_cols=61 Identities=33% Similarity=0.285 Sum_probs=53.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 043768 27 LKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELV 87 (98)
Q Consensus 27 l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 87 (98)
-...+...|++++|+++..|+..++.-.+......+++.++-..|.+++|+++.+|...-.
T Consensus 243 re~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~ 303 (325)
T KOG4223|consen 243 REQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHY 303 (325)
T ss_pred HHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCc
Confidence 3567788999999999999999988876776778899999999999999999999876543
No 63
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.41 E-value=0.00029 Score=28.93 Aligned_cols=25 Identities=36% Similarity=0.654 Sum_probs=12.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHH
Q 043768 28 KGMFWRCDKNGDGRLSRQELEDAFS 52 (98)
Q Consensus 28 ~~~f~~~d~~~~g~i~~~el~~~l~ 52 (98)
..+|..+|.+++|.|+..+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555555555554443
No 64
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.24 E-value=0.00047 Score=28.25 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=23.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 63 AKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 63 ~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
++.+|..+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988763
No 65
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0014 Score=47.82 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=59.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH--hcCCcc
Q 043768 26 QLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA--QFGYTL 97 (98)
Q Consensus 26 ~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~--~~g~~~ 97 (98)
....+|..+|+...|+++-..-+.+|-.++ ++...+..+|...|.|+||.++.+||.-.+.-+. +-|..|
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~sGq~l 267 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKSGQPL 267 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhcCCCC
Confidence 458899999999999999998888887765 7778899999999999999999999988876553 556544
No 66
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.04 E-value=0.003 Score=33.62 Aligned_cols=62 Identities=10% Similarity=0.168 Sum_probs=50.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhCC--CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHH
Q 043768 26 QLKGMFWRCDKNGDGRLSRQELEDAFSYLGA--YIPGWRAKRALRYADDN----GDGFLADKEIDELVK 88 (98)
Q Consensus 26 ~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~ 88 (98)
++..+|..+.. +.+.++.++|...|..-.. ..+.+.+..++..+.++ ..+.++++.|..+|.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 46789999955 7899999999999976432 35788999999988665 368899999998874
No 67
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.00071 Score=46.30 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=45.5
Q ss_pred CCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 36 KNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 36 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
-+.+|.|++.|...++-.+. .++..++-.|+.+|.|+||-|+.+||..+..-+.
T Consensus 210 lg~~GLIsfSdYiFLlTlLS--~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~ 263 (489)
T KOG2643|consen 210 LGESGLISFSDYIFLLTLLS--IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIR 263 (489)
T ss_pred cCCCCeeeHHHHHHHHHHHc--cCcccceeeeeeeecCCCCcccHHHHHHHHHHHH
Confidence 45689999999888877765 5667788889999999999999999999886553
No 68
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0022 Score=44.79 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=56.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH--hcCCcc
Q 043768 28 KGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA--QFGYTL 97 (98)
Q Consensus 28 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~--~~g~~~ 97 (98)
-.-|+.+-+|..|.|+-.--+..+.... ++-+++..+|...|.+.+|.+++.||...++.+- +-||.+
T Consensus 234 vnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypL 303 (737)
T KOG1955|consen 234 VNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPL 303 (737)
T ss_pred HhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCC
Confidence 5568888899999999888777777654 5668999999999999999999999999998653 556654
No 69
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.91 E-value=0.0015 Score=32.99 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=26.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 63 AKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 63 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
++.+|..+|.+++|.|+.+||..++..+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 57899999999999999999999998653
No 70
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.65 E-value=0.01 Score=42.24 Aligned_cols=75 Identities=20% Similarity=0.151 Sum_probs=63.5
Q ss_pred CCCCcHHHH---HHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhc
Q 043768 19 SIPYTKEQL---KGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQF 93 (98)
Q Consensus 19 ~~~~~~~~l---~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 93 (98)
+..+..+++ +.-|..+|.++.|++...++..+++..+..++.+.+.+.....+..-+|.+...||.+++..+.+.
T Consensus 584 ~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 584 PIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred ccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 334444444 566889999999999999999999998888999999999999999999999999999998876544
No 71
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.024 Score=32.36 Aligned_cols=65 Identities=28% Similarity=0.235 Sum_probs=45.8
Q ss_pred CcHHHHH-HHHHhhcCCCCCcccHHHHHHHHHhh------CC-C--C-CHHHH----HHHHHhhCCCCCCcccHHHHHHH
Q 043768 22 YTKEQLK-GMFWRCDKNGDGRLSRQELEDAFSYL------GA-Y--I-PGWRA----KRALRYADDNGDGFLADKEIDEL 86 (98)
Q Consensus 22 ~~~~~l~-~~f~~~d~~~~g~i~~~el~~~l~~~------~~-~--~-~~~~~----~~~~~~~d~~~~g~i~~~ef~~~ 86 (98)
.+.++++ ..|...|-++++.++--|+..++.-. +. + + ++.++ ..+++--|.+++|.|+|.||...
T Consensus 63 mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 63 MTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4445554 35889999999999999988887543 21 2 2 33343 44566678899999999998653
No 72
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.22 E-value=0.012 Score=40.73 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=44.8
Q ss_pred HHHHHH----hhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 27 LKGMFW----RCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 27 l~~~f~----~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
+.++|. .+-...+|+++.+++.-.+-+....-+...++.+|+.+|.+++|.++..|+.-+....
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq 380 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQ 380 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHH
Confidence 456666 2223456777777776666665555556678899999999999999988876665543
No 73
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.22 E-value=0.012 Score=31.94 Aligned_cols=30 Identities=30% Similarity=0.294 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
+.+..++..+|.+++|.|+++||..++..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 679999999999999999999998888765
No 74
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.19 E-value=0.017 Score=31.28 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 20 IPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 20 ~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
...+.+++.+++..+|.+++|.|+++||..++..+
T Consensus 46 ~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 46 SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 34577889999999999999999999998777654
No 75
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.16 E-value=0.019 Score=31.31 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
.....+..++..+|.+++|.|+++||..++..+
T Consensus 50 ~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 50 KDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred cCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 355679999999999999999999999888765
No 76
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.0044 Score=42.60 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=40.3
Q ss_pred CcccHHHHHHHHHh-hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcCC
Q 043768 40 GRLSRQELEDAFSY-LGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQFGY 95 (98)
Q Consensus 40 g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~g~ 95 (98)
+.|+..+++.+... .+..+++.-++-+|..+|.|+||.++.+||..++++-.+-|+
T Consensus 403 ~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhrgl 459 (489)
T KOG2643|consen 403 ASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHRGL 459 (489)
T ss_pred CCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhccc
Confidence 44555555544432 355555555666899999999999999999999997666554
No 77
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.00 E-value=0.057 Score=32.87 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCC---------------------------------------------
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIP--------------------------------------------- 59 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~--------------------------------------------- 59 (98)
..|++-..-+|.|+||.|.+-|-...++.+|..+-
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 34677788899999999999998777777654431
Q ss_pred --------HHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 60 --------GWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 60 --------~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
...++++|..++..+.+.+++.|+.+++..
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 356888999999888889999999888763
No 78
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.99 E-value=0.019 Score=38.33 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=46.6
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
..+-++-.|++|+.+.||.+...+|..+++.. ..+..-.+..+|...+...+++|.+++|..++.
T Consensus 294 t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 294 TPVIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred cHHHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 34556777888888888888887777777763 224445566678888877788888888877754
No 79
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.90 E-value=0.026 Score=30.42 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=28.2
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
..+.+..+|..+|.+++|.|++++|..++..+
T Consensus 49 ~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 49 NQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 36779999999999999999999998887754
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.89 E-value=0.026 Score=31.61 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=30.0
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 19 SIPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 19 ~~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
...++.+.+..+|...|.+++|+++.+||.-++..+
T Consensus 37 ~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 37 KSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 446778889999999999999999999998877643
No 81
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.88 E-value=0.027 Score=30.47 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
.+.+.+..++..+|++++|.|++++|..++..+
T Consensus 49 ~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 49 KDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred CCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 466789999999999999999999998887764
No 82
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.87 E-value=0.027 Score=30.55 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=27.7
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
....+..++..+|.+++|.|+++||..++..+
T Consensus 50 ~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 50 DPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred CHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45678899999999999999999998887654
No 83
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.82 E-value=0.019 Score=32.72 Aligned_cols=29 Identities=31% Similarity=0.467 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 043768 24 KEQLKGMFWRCDKNGDGRLSRQELEDAFS 52 (98)
Q Consensus 24 ~~~l~~~f~~~d~~~~g~i~~~el~~~l~ 52 (98)
+..+..+|..+|.+++|.||.+||..++.
T Consensus 79 e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 79 EHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45567899999999999999999999883
No 84
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.81 E-value=0.025 Score=44.53 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=52.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 29 GMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 29 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
..|..+|+|+.|.|+..+|..++.. ....+.++++.++.....+.+...++++|+.-+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 3477889999999999999999987 45588899999999999999999999999887654
No 85
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.80 E-value=0.023 Score=30.93 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=30.0
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhC
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLG 55 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~ 55 (98)
..+.+.+..++..+|.+++|.|++++|..++...+
T Consensus 47 ~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 47 QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 34567899999999999999999999998887654
No 86
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.79 E-value=0.14 Score=30.54 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=47.5
Q ss_pred HHHHHhh---cCCCCCcccHHHHHHHHHhh---CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 28 KGMFWRC---DKNGDGRLSRQELEDAFSYL---GAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 28 ~~~f~~~---d~~~~g~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
+.+|..| .......++...|..+|+.. ...++...+.-+|..+-..+...|+|++|..+|..+.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 3444444 45556688999999999875 3447788899999998877777899999999999876
No 87
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.72 E-value=0.036 Score=29.97 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=29.2
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
..+.+++..++..+|++++|.|++++|..++..+
T Consensus 47 ~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 47 IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3566779999999999999999999998887653
No 88
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.70 E-value=0.035 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
.+.+.+..+|..+|.+++|.|++.++..++..+
T Consensus 30 ~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 30 LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 366778999999999999999999998887653
No 89
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.48 E-value=0.056 Score=29.54 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
.....+..++..+|.++||.|++.||..++..+
T Consensus 45 ~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 45 NDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 355678999999999999999999998888765
No 90
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.40 E-value=0.071 Score=25.96 Aligned_cols=35 Identities=34% Similarity=0.636 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 20 IPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 20 ~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
.....+-...+|..+|+.++|.+..+|+...++.+
T Consensus 16 I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 16 IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp ----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 34455667889999999999999999998887653
No 91
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.39 E-value=0.041 Score=26.34 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 63 AKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 63 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
+..+|..+|.+++|.|++++|..++..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 4568899999999999999999988754
No 92
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.29 E-value=0.045 Score=29.83 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh-----CCCCCHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL-----GAYIPGW 61 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~-----~~~~~~~ 61 (98)
.+.+++..++..+|.+.+|.|++++|..++... |.+++.+
T Consensus 41 ~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~ 85 (96)
T smart00027 41 LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPAS 85 (96)
T ss_pred CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 456779999999999999999999998887643 5555443
No 93
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.24 E-value=0.076 Score=38.94 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
.-+..+|...|++.+|.++..+...++..+...+....+..+|++.+..+++.+..++|..+...+
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 346888999999999999999999999988877888888888888888888888888888776654
No 94
>PF14658 EF-hand_9: EF-hand domain
Probab=95.13 E-value=0.081 Score=27.17 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=29.3
Q ss_pred CCcHHHHHHHHHhhcCCCC-CcccHHHHHHHHHh
Q 043768 21 PYTKEQLKGMFWRCDKNGD-GRLSRQELEDAFSY 53 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~-g~i~~~el~~~l~~ 53 (98)
.+.+.+++.+...+||++. |.+++++|..+++.
T Consensus 31 ~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 31 SPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 5677789999999999998 99999999988864
No 95
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.85 E-value=0.073 Score=39.82 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=54.3
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHH-----HHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGW-----RAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~-----~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
....+++++|..+++...|.++.+++..++-.+|...-.+ ++..+.+..|...-|++.+.+|.+.|.+
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 4456789999999999999999999999999888766542 3444556666677788999999998876
No 96
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.58 E-value=0.28 Score=34.86 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=44.9
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 31 FWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 31 f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
-...|.-+||.|+++||+..=..+. .++.-....|..+|..++|.++++++.+++....
T Consensus 80 a~iaD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 80 ASIADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred HhhhhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 3355667889999999876544443 3455667789999999999999999999987543
No 97
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=94.52 E-value=0.13 Score=27.42 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
.....+..++..+|.+++|.|++++|..++...
T Consensus 48 ~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 48 KDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 356779999999999999999999998888764
No 98
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.49 E-value=0.08 Score=35.72 Aligned_cols=62 Identities=24% Similarity=0.113 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 24 KEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 24 ~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
...+..+|..+|.+.+|.++..||..+-.. -.+.=++.+|+..|...+|.|+-.|....+.+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 466899999999999999999998865433 23345788999999999999998887666543
No 99
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.49 Score=35.38 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=48.3
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 30 MFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 30 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
.|..+ +.+.|+|+-..-+.++-.++ ++..-+.++|...|.|.||+++..||+-.|+.+.
T Consensus 21 qF~~L-kp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~ 79 (1118)
T KOG1029|consen 21 QFGQL-KPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIK 79 (1118)
T ss_pred HHhcc-CCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHH
Confidence 34443 35679999998888887766 6667889999999999999999999999988664
No 100
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=94.27 E-value=0.18 Score=32.68 Aligned_cols=59 Identities=25% Similarity=0.185 Sum_probs=48.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 043768 27 LKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDE 85 (98)
Q Consensus 27 l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 85 (98)
.+..=..+|.+.+|.++.+||...+.-........++..++...|.+++.+++.+++..
T Consensus 283 kkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 283 KKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 44445588999999999999998876556666667888899999999999999988654
No 101
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=93.76 E-value=0.083 Score=33.09 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 62 RAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 62 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
.+..+|+.+|.+.||+|++.|+..+|..++
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg 129 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLG 129 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhC
Confidence 356689999999999999999999998764
No 102
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.64 E-value=0.12 Score=37.40 Aligned_cols=55 Identities=25% Similarity=0.206 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHH
Q 043768 27 LKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKE 82 (98)
Q Consensus 27 l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 82 (98)
+.++|..+|...+|.+++.++...+..+...-..+.+.-+|+.+|.+++ ..+.++
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 5788999999999999999988888876544445567778888888777 665554
No 103
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=93.51 E-value=0.36 Score=32.52 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=54.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLG-AYIPGWRAKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
+.+..+|..||.+.+|.+++.+....+..+. ...+...++..|+.++...||.+.-.+|..+++..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV 325 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 5578899999999999999888776666654 44566778889999999999999988888887653
No 104
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=92.63 E-value=0.21 Score=28.30 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDA 50 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~ 50 (98)
...+..+...|...|.+++|.|+..|+..+
T Consensus 84 ~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 84 MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 445556788999999999999999998753
No 105
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=91.95 E-value=0.88 Score=32.46 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=46.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCC------CC-----------------------------HHHHHHHHHhhC
Q 043768 27 LKGMFWRCDKNGDGRLSRQELEDAFSYLGAY------IP-----------------------------GWRAKRALRYAD 71 (98)
Q Consensus 27 l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~------~~-----------------------------~~~~~~~~~~~d 71 (98)
...+|..||+.++|.++.+++..++...... ++ .+...+.|...|
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d 189 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKD 189 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999875321 11 234556677777
Q ss_pred CCCCCcccHHHHHHHHHHH
Q 043768 72 DNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 72 ~~~~g~i~~~ef~~~l~~~ 90 (98)
..++|.|+.-+|...+..+
T Consensus 190 ~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 190 KAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred ccCCCeeeeechHhhhhhh
Confidence 7777777766666665543
No 106
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.87 E-value=0.16 Score=34.08 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=50.2
Q ss_pred CcHH-HHHHHHHhhcCCCCCcccHHHHHHHHHhhC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 22 YTKE-QLKGMFWRCDKNGDGRLSRQELEDAFSYLG-AYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 22 ~~~~-~l~~~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
..++ .+...|..+|++.++-|...|++..-+.+- ..-...=.+.+++..|.+++-.|+++|....+..
T Consensus 329 ~DeeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 329 PDEERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred CChhheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3344 357779999999999999888655444331 1123344678999999999999999999888753
No 107
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.25 E-value=2.3 Score=26.11 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCC-------CCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 043768 20 IPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGA-------YIPGWRAKRALRYADDNGDGFLADKEIDELV 87 (98)
Q Consensus 20 ~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~-------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 87 (98)
.+.....+.++|..+++.+.+.++..|+..+++.--. ..+.-|..-++..+ .+.+|.+..++...++
T Consensus 91 GrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 91 GRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred CcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 3445577999999999988899999999999876211 11223444455444 4668899888776654
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=90.43 E-value=1.5 Score=31.94 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=39.5
Q ss_pred CCCcccHHHHHHHHHhhCC--CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 38 GDGRLSRQELEDAFSYLGA--YIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
+.|.++++++..+.+.+.. ..++.++..+|..+..++ +.++.++|..++...+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 4588899888777776532 236778899998886544 5799999988887765
No 109
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=90.41 E-value=0.86 Score=32.01 Aligned_cols=63 Identities=13% Similarity=0.272 Sum_probs=52.1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 28 KGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 28 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
...|..++.+..|.|+...|...... +..+....+.+++..++..+.+.+.-++|...+..+-
T Consensus 142 ~~~f~k~~~d~~g~it~~~Fi~~~~~-~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli 204 (493)
T KOG2562|consen 142 ASTFRKIDGDDTGHITRDKFINYWMR-GLMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELI 204 (493)
T ss_pred hhhhhhhccCcCCceeHHHHHHHHHh-hhhHHHHHHHHHHHHHhccCccceeccccHHHHHHHH
Confidence 45788899999999999998877665 3446667788899999999999999999998887653
No 110
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.36 E-value=0.67 Score=31.10 Aligned_cols=59 Identities=27% Similarity=0.277 Sum_probs=41.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHh-h----CCCCCHHH-----------HHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 30 MFWRCDKNGDGRLSRQELEDAFSY-L----GAYIPGWR-----------AKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 30 ~f~~~d~~~~g~i~~~el~~~l~~-~----~~~~~~~~-----------~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
.|..+|.+++|.++-.+|-.++.. + ...-.+++ .+.+++.+|.+.+..|++++|...-.
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 455566778999999998887753 2 21111111 34579999999999999999976543
No 111
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.06 E-value=0.44 Score=24.68 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAF 51 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l 51 (98)
.+.+++...|+.+ .++.++||..+|+..+
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 3557899999999 7888999999998764
No 112
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.13 E-value=0.45 Score=35.88 Aligned_cols=74 Identities=27% Similarity=0.382 Sum_probs=59.8
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH--hcCCcc
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA--QFGYTL 97 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~--~~g~~~ 97 (98)
..+..+...|+.+|+.++|.|+-.+-...+...+ ++...+-++|...|..+.|.++...|+..+..+. +.|.++
T Consensus 8 ~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~ 83 (847)
T KOG0998|consen 8 PGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGREL 83 (847)
T ss_pred CccchHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCc
Confidence 3445678899999999999999998777777655 6667778899999999999999999999988765 455543
No 113
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=88.92 E-value=2 Score=22.15 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=33.0
Q ss_pred cHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 43 SRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 43 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
+.+++..++...+..++..++..+++.-+..+--..+-+.+..++.
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 4567888888888888999999888886665444455555666665
No 114
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.92 E-value=2.5 Score=23.07 Aligned_cols=63 Identities=6% Similarity=0.093 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhh-------C----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 24 KEQLKGMFWRCDKNGDGRLSRQELEDAFSYL-------G----AYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 24 ~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
.+.++-+|..+ .|++|.++...|...+... + .+..+..++.+|.... ..-.|+.++|.+.+..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 46678889988 6889999999887777542 2 2235677888888863 3456999999888753
No 115
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=88.61 E-value=1.1 Score=30.99 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCcccHHHHH
Q 043768 55 GAYIPGWRAKRALRYADDNGDGFLADKEID 84 (98)
Q Consensus 55 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 84 (98)
+.......++.+|+.+|.+++|.|+.+||.
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 455667789999999999999999999996
No 116
>PLN02228 Phosphoinositide phospholipase C
Probab=87.69 E-value=8.5 Score=28.07 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=48.9
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCC--CCHHHHHHHHHhhCCC----CCCcccHHHHHHHHH
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAY--IPGWRAKRALRYADDN----GDGFLADKEIDELVK 88 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~--~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~ 88 (98)
..+..++..+|..+.. ++.++.++|...|...... .+.+.+..++..+... ..|.++.+.|..++.
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 3466779999998864 3689999999998876432 4556688888887653 235789999988774
No 117
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.75 E-value=0.36 Score=36.36 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=56.6
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
....+..+|...|.+.+|.|+..+....+.. .+++...+...|...|....|.+++++|.-.+..+.
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 3445677899999999999999998888777 347778899999999999999999998888776654
No 118
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=85.18 E-value=3 Score=23.21 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=38.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCC---CCCCcccHHHHHHHHHHHH
Q 043768 26 QLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADD---NGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 26 ~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~ef~~~l~~~~ 91 (98)
.++.-|..+.. +|+++..+|..|+-.- -+.+-+.++|..+.. -....|+.+|+..++..+.
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIGM~---dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIGMK---DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcCCc---ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 45666776655 8999999999988642 344545555555433 2246799999999998765
No 119
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.77 E-value=1.2 Score=31.82 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 043768 18 ASIPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSY 53 (98)
Q Consensus 18 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~ 53 (98)
....+..++|..+|...|.+.||.++..||+.++-.
T Consensus 258 tKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 258 TKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hhccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 355677888999999999999999999999998854
No 120
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=84.66 E-value=1.3 Score=26.18 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=28.9
Q ss_pred CCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHHH
Q 043768 39 DGRLSRQELEDAFSYLGAYIPGWRAKRALRYADD-------NGDGFLADKEIDELVKY 89 (98)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~l~~ 89 (98)
-+.+++.||.++-+.+. .+...+..+++.+.. +..+.|+++-|..+|..
T Consensus 5 ~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp -S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 46788999888766554 234466777777643 34457999999999874
No 121
>PLN02222 phosphoinositide phospholipase C 2
Probab=84.16 E-value=11 Score=27.53 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=47.2
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCC--CCHHHHHHHHHhhCC-CCCCcccHHHHHHHHH
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAY--IPGWRAKRALRYADD-NGDGFLADKEIDELVK 88 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~--~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~ 88 (98)
...++..+|..+.. ++.++.++|...|...+.. .+.+.+..++..+.. ...+.++++.|..+|.
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 44579999999864 4799999999999876532 456677888877532 2355689998888774
No 122
>PLN02230 phosphoinositide phospholipase C 4
Probab=83.47 E-value=16 Score=26.97 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=46.9
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCC---CCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHH
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGA---YIPGWRAKRALRYADD-------NGDGFLADKEIDELVK 88 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~l~ 88 (98)
..+..++..+|..+..++ +.++.++|...|..-+. ..+.+.+..++..+.. -+.+.++++.|..++.
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 345677999999996444 89999999999987652 2355666666654322 1234689999888764
No 123
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=82.55 E-value=5.6 Score=32.59 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHh--hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSY--LGAYIPGWRAKRALRYADDNGDGFLADKEIDEL 86 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~--~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 86 (98)
-.+.++....||+.+|+|+..+....+-. ..--.+.++++..|+.++. +.-+|+.++.+..
T Consensus 2296 p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~ 2358 (2399)
T KOG0040|consen 2296 PEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN 2358 (2399)
T ss_pred hhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc
Confidence 36888999999999999999998766643 2222566689999999998 4556766665433
No 124
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=80.73 E-value=7 Score=21.12 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=37.2
Q ss_pred CcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 40 GRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 40 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
..+|..||....+.++.+++.++++.+...+-...-.-.+-++=..++..+.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3578889999999999999988888887777655444445555555555543
No 125
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=79.79 E-value=3 Score=16.34 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=8.4
Q ss_pred CCCCCcccHHHHHHHH
Q 043768 72 DNGDGFLADKEIDELV 87 (98)
Q Consensus 72 ~~~~g~i~~~ef~~~l 87 (98)
.+++|.|+.-++.-+-
T Consensus 2 vN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 2 VNGDGKVNAIDLALLK 17 (21)
T ss_dssp TTSSSSSSHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHH
Confidence 4555666555554443
No 126
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=78.28 E-value=8.7 Score=20.77 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=38.8
Q ss_pred CCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhc
Q 043768 39 DGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQF 93 (98)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 93 (98)
+-.++..++...++....-.+..+...+=...|..++++|+.=||.-+.+..+.+
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqPw 74 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQPW 74 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT--G
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHhhH
Confidence 4568999999999987655555666777788999999999987776666554443
No 127
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=78.12 E-value=2.8 Score=24.03 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 58 IPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 58 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
+++++++.+|..+-.+..|.|.|.||..-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6788899999999999999999998876543
No 128
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=77.66 E-value=7.8 Score=29.31 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
..+-.++..||+..+|.|..-+|+-.+-.+......+....+|+.+..++...+ -..|..++..
T Consensus 470 ~~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~d 533 (966)
T KOG4286|consen 470 MCLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHD 533 (966)
T ss_pred HHHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHH
Confidence 456888999999999999988888777777666777888899999987766443 4445555443
No 129
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=77.29 E-value=3.4 Score=28.28 Aligned_cols=63 Identities=17% Similarity=0.064 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHH---hhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFS---YLGAYIPGWRAKRALRYADDNGDGFLADKEIDELV 87 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~---~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 87 (98)
.+|..+|..+-.+..+......+...-. .+..++-..++-.+|+.+|.+.++.++..|+..+-
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 3567788877666655444444333322 22233456788899999999999999999887653
No 130
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=77.22 E-value=6.3 Score=21.42 Aligned_cols=50 Identities=20% Similarity=0.097 Sum_probs=25.3
Q ss_pred CCcccHHHHHHHHHhh--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 39 DGRLSRQELEDAFSYL--GAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 39 ~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
||.++..|...+-..+ ...++..+...++..+........++.+|...+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5666666644443322 1235555555555555544444455555555443
No 131
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.65 E-value=3.7 Score=28.36 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGW 61 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~ 61 (98)
.+.+++++.|+.+|+.++|+|+-.-+..++..++..+++.
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~ 345 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEP 345 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCH
Confidence 3467899999999999999999999999998887545443
No 132
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=75.11 E-value=22 Score=26.85 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=50.3
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
....+..+|+..+...++++...++.........++ ++..+|..+..+ .+.++.+++..++...+
T Consensus 170 ~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 170 SESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred hHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhc
Confidence 344567788888888899999999888887766544 677788877766 77889888888887765
No 133
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=74.35 E-value=5.4 Score=29.14 Aligned_cols=32 Identities=38% Similarity=0.536 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCC
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGA 56 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~ 56 (98)
+-+..+|..+|.|+||.++..|+..++.....
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 34688999999999999999999999998643
No 134
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.91 E-value=7.1 Score=27.33 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=40.7
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 28 KGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 28 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
..+|..+.+ -+|+|+-..-+..+-.+ .++.+-+-++|+..|.+.+|.++-+||.-.=.
T Consensus 447 de~fy~l~p-~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefala~h 504 (532)
T KOG1954|consen 447 DEIFYTLSP-VNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFALANH 504 (532)
T ss_pred Hhhhhcccc-cCceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHHHHHH
Confidence 445555433 35777765555444433 37777888999999999999999999965533
No 135
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=73.55 E-value=11 Score=19.55 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=28.2
Q ss_pred CcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 40 GRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 40 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
-++++..|..++... ++...+..+...++.=..+.|+.++|...+..+
T Consensus 7 p~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 355555555555543 444555555555544446778888888877653
No 136
>PLN02952 phosphoinositide phospholipase C
Probab=69.20 E-value=44 Score=24.76 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=45.0
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCC--CCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHH
Q 043768 22 YTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGA--YIPGWRAKRALRYADD-------NGDGFLADKEIDELVK 88 (98)
Q Consensus 22 ~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~l~ 88 (98)
....++..+|..+.. +.+.++.++|...|..... ..+.+.+..++..+-. .....++++.|..++.
T Consensus 35 ~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 35 EPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred CChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 356678999998864 4478999999999987653 2455666666554311 1234588998888874
No 137
>PLN02223 phosphoinositide phospholipase C
Probab=68.58 E-value=43 Score=24.45 Aligned_cols=67 Identities=10% Similarity=-0.055 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh---C--CCCCHHHHHHHHHhhCCCC--------CCcccHHHHHHHH
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL---G--AYIPGWRAKRALRYADDNG--------DGFLADKEIDELV 87 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~---~--~~~~~~~~~~~~~~~d~~~--------~g~i~~~ef~~~l 87 (98)
....+.+..+|..+- ++.|.++...+...++.+ + ...+.++++.++..+-... .+.++++.|..++
T Consensus 12 ~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 345677999999984 677899999998888433 2 3355666666666543322 2568999888877
Q ss_pred H
Q 043768 88 K 88 (98)
Q Consensus 88 ~ 88 (98)
.
T Consensus 91 ~ 91 (537)
T PLN02223 91 F 91 (537)
T ss_pred c
Confidence 4
No 138
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=67.88 E-value=14 Score=18.48 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 41 RLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 41 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
.+|.+|+...+..+...++..++..+|..+- .+....|......+
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~-----~~er~k~~~M~~~L 53 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQVH-----GIERDKFVDMQENL 53 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHHHH-----HHHHHhHHHHHHHH
Confidence 4678888888888888888888877776644 23334455554444
No 139
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=65.00 E-value=13 Score=21.56 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=10.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHH
Q 043768 28 KGMFWRCDKNGDGRLSRQELEDAF 51 (98)
Q Consensus 28 ~~~f~~~d~~~~g~i~~~el~~~l 51 (98)
..++..||++++|.|..-.++.++
T Consensus 100 n~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 100 NWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHHHhCCCCCCeeehhHHHHHH
Confidence 444455555555555554444443
No 140
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=64.05 E-value=58 Score=25.65 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhh----------CCCCCHHHHHHHHHhhCCCCC----CcccHHHHHHHHH
Q 043768 24 KEQLKGMFWRCDKNGDGRLSRQELEDAFSYL----------GAYIPGWRAKRALRYADDNGD----GFLADKEIDELVK 88 (98)
Q Consensus 24 ~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~d~~~~----g~i~~~ef~~~l~ 88 (98)
..++.++|..+..+..-++|..+|..++..- ...+....+..++..+..+.+ |.++.+-|+..+.
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 3567889999888888999999999999753 222456678888888887743 6777777766553
No 141
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=63.20 E-value=16 Score=18.51 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=30.1
Q ss_pred CCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCC
Q 043768 38 GDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNG 74 (98)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 74 (98)
.++-++...+...+...+..++++.++..++.++.+|
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4466788888888888788888888998888888765
No 142
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=62.77 E-value=6.9 Score=24.78 Aligned_cols=55 Identities=25% Similarity=0.197 Sum_probs=26.5
Q ss_pred HHhhcC-CCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 043768 31 FWRCDK-NGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELV 87 (98)
Q Consensus 31 f~~~d~-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 87 (98)
|-.+|. .-+|+++..||.-+-.-+ -+.+.=+..+|...|.+.++.|.++|....+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 344443 235666666654422111 1222234455666666666666666655443
No 143
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=62.53 E-value=46 Score=23.80 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=41.9
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSY-LGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
....+.++.+-+..|.|.+|-|+.+|-...++. +.+.-+.....+.|. ..+..|+.+++-..+..
T Consensus 64 klg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH----~dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 64 KLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFH----GDDKHITVEDLWEAWKE 129 (575)
T ss_pred hhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhcc----CCccceeHHHHHHHHHh
Confidence 455678899999999999999999997777764 333222222222332 23556777766555543
No 144
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=62.42 E-value=22 Score=24.45 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 27 LKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 27 l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
+..+...+|+.+.|+++.....-++..+..+--.+.++.+|.... +.+|-+.+-.|.++++.+.
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHH
Confidence 355667888899999888777777766544444456777776654 5577788888888887654
No 145
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=62.35 E-value=35 Score=23.11 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=12.1
Q ss_pred CcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 043768 40 GRLSRQELEDAFSYLGAYIPGWRAKRALRYA 70 (98)
Q Consensus 40 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 70 (98)
|.||.+|-...++......+.+.++.+++.+
T Consensus 301 G~itReeal~~v~~~d~~~~~~~~~~~~~~l 331 (343)
T TIGR03573 301 GRITREEAIELVKEYDGEFPKEDLEYFLKYL 331 (343)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 4444444444343332223333344444443
No 146
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=61.88 E-value=13 Score=16.06 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=12.9
Q ss_pred CCcccHHHHHHHHHHHH
Q 043768 75 DGFLADKEIDELVKYAA 91 (98)
Q Consensus 75 ~g~i~~~ef~~~l~~~~ 91 (98)
.|.|+++++..+..++.
T Consensus 2 ~~~i~~~~~~d~a~rv~ 18 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVN 18 (33)
T ss_pred CceecHHHHHHHHHHHH
Confidence 46788888888877765
No 147
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=59.80 E-value=24 Score=26.30 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 62 RAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 62 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
-+..+|...|.+++|.++|.+|+..+..+.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 467899999999999999999999887654
No 148
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=58.67 E-value=32 Score=19.47 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=29.3
Q ss_pred hhcCCCCCcccHHHHHHHHHhh----------CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 043768 33 RCDKNGDGRLSRQELEDAFSYL----------GAYIPGWRAKRALRYADDNGDGFLADKEIDELV 87 (98)
Q Consensus 33 ~~d~~~~g~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 87 (98)
.+|+....+|+.+++..+++.- |.-++..-+.+++-+...++...+..+=+.+++
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlI 75 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQII 75 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 4566666777777777776541 222344445555555555554444444333333
No 149
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=58.31 E-value=28 Score=21.54 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhC
Q 043768 36 KNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYAD 71 (98)
Q Consensus 36 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 71 (98)
.+.+|+++.++|...+..-+..++.+++..+...-+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 578999999999888887666677888888776644
No 150
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.98 E-value=39 Score=20.23 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=40.1
Q ss_pred HHHHhhcCCCCCcccHHH---HHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 29 GMFWRCDKNGDGRLSRQE---LEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 29 ~~f~~~d~~~~g~i~~~e---l~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
-+|+....| |.++..| ++.++.. .+.++.+++..++.....-+...+++-.|...+.+
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 457776554 4445544 5555555 45688888888888877777777888888877763
No 151
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=57.04 E-value=37 Score=20.96 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=26.9
Q ss_pred CCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhC
Q 043768 36 KNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYAD 71 (98)
Q Consensus 36 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 71 (98)
.|.+|+++.++|...++.-+..++.+.+.++...-|
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 468899999999988876455577887777765544
No 152
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=54.68 E-value=29 Score=17.74 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=26.9
Q ss_pred CCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 043768 38 GDGRLSRQELEDAFSYLGAYIPGWRAKRALRYA 70 (98)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 70 (98)
.+--|+.+-++..+.+.|..+++..+.++++..
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 355688888999999999999999888887654
No 153
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=54.02 E-value=57 Score=23.72 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHh---hCC-----CCCCcccHHHHHHHHH
Q 043768 30 MFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRY---ADD-----NGDGFLADKEIDELVK 88 (98)
Q Consensus 30 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~---~d~-----~~~g~i~~~ef~~~l~ 88 (98)
+|..+.....++++.--|..+|+++|..-++..+.++|.. ++. ..-+.++-+-|..++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 4666666667999999999999999988777666665433 332 2224467777766543
No 154
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=53.73 E-value=40 Score=19.17 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhC
Q 043768 28 KGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYAD 71 (98)
Q Consensus 28 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 71 (98)
-..|..+...++...+..++..++...+.....+.+..++..+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 34566666777778889999999999998899988988888875
No 155
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=53.71 E-value=18 Score=29.82 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=32.2
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCC
Q 043768 20 IPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAY 57 (98)
Q Consensus 20 ~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~ 57 (98)
+...-+...+++..+|++..|+|...++...++.+..+
T Consensus 1412 s~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~pp 1449 (1592)
T KOG2301|consen 1412 SEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPP 1449 (1592)
T ss_pred CcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCc
Confidence 34555778999999999999999999999999987544
No 156
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=53.66 E-value=23 Score=17.76 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=19.0
Q ss_pred cccHHHHHHHHHhhCCCCCHHHHHHH
Q 043768 41 RLSRQELEDAFSYLGAYIPGWRAKRA 66 (98)
Q Consensus 41 ~i~~~el~~~l~~~~~~~~~~~~~~~ 66 (98)
.|+.++|..+++.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888899999888777777776543
No 157
>PRK00523 hypothetical protein; Provisional
Probab=52.99 E-value=33 Score=17.95 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=26.9
Q ss_pred CCcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 043768 39 DGRLSRQELEDAFSYLGAYIPGWRAKRALRYA 70 (98)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 70 (98)
+--|+.+-++..+.+.|..+++..+.++++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45678888999999999999999998888765
No 158
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=52.97 E-value=50 Score=24.48 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHH-hhCCCCCHHHHHHHHHh
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFS-YLGAYIPGWRAKRALRY 69 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~-~~~~~~~~~~~~~~~~~ 69 (98)
..+.++|...|.+.+|.++-.|+-..-. .++.++...++..+-..
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~v 240 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNV 240 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHH
Confidence 3578999999999999999999765533 34556665555444333
No 159
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=52.96 E-value=20 Score=18.92 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCC
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNG 74 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 74 (98)
+.++++...- ...|++|+.++..+|.... ++.+.+..++..+...|
T Consensus 7 ~~i~~Li~~g--K~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 7 EAIKKLIEKG--KKKGYLTYDEINDALPEDD--LDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp HHHHHHHHHH--HHHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH--hhcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHHCC
Confidence 4455555542 3468999999988887533 56677777777766443
No 160
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.42 E-value=69 Score=23.91 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=48.6
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh---C-----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 043768 20 IPYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL---G-----AYIPGWRAKRALRYADDNGDGFLADKEIDELVK 88 (98)
Q Consensus 20 ~~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~---~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 88 (98)
....+.+++-+|..+|. .+|.++.+++..++..+ + .....+-...++...|.+..+.+..+++..++.
T Consensus 13 ~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 13 DCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred CCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 34566779999999998 88999999988877643 1 112233456678888888888887777666655
No 161
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=44.41 E-value=90 Score=20.49 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=29.2
Q ss_pred CCCCcccHHHHHHHHHhh--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 043768 37 NGDGRLSRQELEDAFSYL--GAYIPGWRAKRALRYADDNGDGFLADKEIDELVKY 89 (98)
Q Consensus 37 ~~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 89 (98)
.-||.++..|+. ..+.+ ...++.++.+.+...+........++.+|...+..
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 458999999986 33432 13356666333334443333444667776666543
No 162
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=43.93 E-value=36 Score=15.76 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=18.9
Q ss_pred HHHHHHHHhhcC--CCCCcccHHHHHHHHHh
Q 043768 25 EQLKGMFWRCDK--NGDGRLSRQELEDAFSY 53 (98)
Q Consensus 25 ~~l~~~f~~~d~--~~~g~i~~~el~~~l~~ 53 (98)
..+-.+|..|.. ++...++..||+.++..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 345667777652 23457888888887764
No 163
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=43.89 E-value=82 Score=19.90 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=22.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhC---CCCCHHHHHHHHHhhCCCC
Q 043768 27 LKGMFWRCDKNGDGRLSRQELEDAFSYLG---AYIPGWRAKRALRYADDNG 74 (98)
Q Consensus 27 l~~~f~~~d~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~ 74 (98)
+-+++........|.|+..|+...+...- .-++++++....+.+..-+
T Consensus 99 i~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg 149 (223)
T PF04157_consen 99 IAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLG 149 (223)
T ss_dssp HHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcC
Confidence 34444444444556667666666665421 1234444444444444433
No 164
>PRK01844 hypothetical protein; Provisional
Probab=43.83 E-value=49 Score=17.31 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=26.7
Q ss_pred CCcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 043768 39 DGRLSRQELEDAFSYLGAYIPGWRAKRALRYA 70 (98)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 70 (98)
+--|+.+-++..+.+.|..+++..+.++++..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45678888999999999999999988888765
No 165
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=43.73 E-value=50 Score=22.02 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=23.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcCCc
Q 043768 62 RAKRALRYADDNGDGFLADKEIDELVKYAAQFGYT 96 (98)
Q Consensus 62 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~g~~ 96 (98)
.+..+|+++..++.|.++|.+.+...+ |.||+
T Consensus 179 TLsYifne~s~gk~~~~sfsdvVk~AK---klGYT 210 (364)
T KOG0455|consen 179 TLSYIFNELSDGKPGTLSFSDVVKAAK---KLGYT 210 (364)
T ss_pred cHHHHHHHhhcCCCCcccHHHHHHHHH---HcCCC
Confidence 467789999988888888876665554 66664
No 166
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.69 E-value=49 Score=17.23 Aligned_cols=33 Identities=6% Similarity=0.142 Sum_probs=27.0
Q ss_pred CCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 043768 38 GDGRLSRQELEDAFSYLGAYIPGWRAKRALRYA 70 (98)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 70 (98)
++-.|+.+-++..+.+.|..+++..+.++++..
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 355788888899999999999999888887754
No 167
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=43.57 E-value=51 Score=23.29 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=22.2
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcC
Q 043768 59 PGWRAKRALRYADDNGDGFLADKEIDELVKYAAQFG 94 (98)
Q Consensus 59 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~g 94 (98)
.+++..++.+..- .|..++++|..-+..+.++|
T Consensus 311 ~~~~~~~~~~~~~---~~~f~l~d~~~q~~~~~kmG 343 (428)
T TIGR00959 311 DEEEAKKLAEKMK---KGQFDLEDFLEQLRQIKKMG 343 (428)
T ss_pred CHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcC
Confidence 3444455555443 36788899988888887776
No 168
>PRK10867 signal recognition particle protein; Provisional
Probab=43.42 E-value=51 Score=23.34 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=21.8
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcC
Q 043768 59 PGWRAKRALRYADDNGDGFLADKEIDELVKYAAQFG 94 (98)
Q Consensus 59 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~g 94 (98)
..++..++.+..- .|..++++|..-+..+.++|
T Consensus 312 ~~~~~~~~~~~~~---~g~f~l~d~~~q~~~~~kmG 344 (433)
T PRK10867 312 DEEKAEKLAKKLK---KGKFDLEDFLEQLQQMKKMG 344 (433)
T ss_pred CHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcC
Confidence 3444444554444 35788899988888887776
No 169
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=42.79 E-value=44 Score=23.66 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcC
Q 043768 62 RAKRALRYADDNGDGFLADKEIDELVKYAAQFG 94 (98)
Q Consensus 62 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~g 94 (98)
+..++.+..- .|..++++|..-+..+.++|
T Consensus 314 ~~~~~~~k~~---~~~f~l~D~~~q~~~i~kmG 343 (429)
T TIGR01425 314 NEKALIEKLK---EGTFTLRDMYEQFQNLLKMG 343 (429)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHhcc
Confidence 3444454443 36788999999888888776
No 170
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=42.75 E-value=48 Score=16.91 Aligned_cols=21 Identities=5% Similarity=0.116 Sum_probs=18.2
Q ss_pred hhcCCCCCcccHHHHHHHHHh
Q 043768 33 RCDKNGDGRLSRQELEDAFSY 53 (98)
Q Consensus 33 ~~d~~~~g~i~~~el~~~l~~ 53 (98)
.+|.....+|+.+++..+++.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 578888899999999998876
No 171
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=41.91 E-value=54 Score=23.21 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=20.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcC
Q 043768 62 RAKRALRYADDNGDGFLADKEIDELVKYAAQFG 94 (98)
Q Consensus 62 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~g 94 (98)
+..++.+... .|..++++|..-+..+.++|
T Consensus 307 ~~~~~~~~~~---~~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 307 EEEKDVEKMM---KGKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred HHHHHHHHHH---cCCcCHHHHHHHHHHHHhcC
Confidence 3444444443 36788999988888888776
No 172
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.51 E-value=50 Score=23.54 Aligned_cols=47 Identities=9% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcC
Q 043768 45 QELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQFG 94 (98)
Q Consensus 45 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~g 94 (98)
-|+..+++........++.+++.+.+- .|..++++|..-+..+.++|
T Consensus 297 GDv~sLvEk~~~~~d~e~a~~~~~kl~---~g~FtL~Df~~Ql~~m~kmG 343 (451)
T COG0541 297 GDVLSLIEKAEEVVDEEEAEKLAEKLK---KGKFTLEDFLEQLEQMKKMG 343 (451)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHccC
Confidence 344444544443344445555555444 35577888887777776664
No 173
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=41.40 E-value=59 Score=18.02 Aligned_cols=29 Identities=3% Similarity=-0.036 Sum_probs=15.3
Q ss_pred ccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 043768 42 LSRQELEDAFSYLGAYIPGWRAKRALRYA 70 (98)
Q Consensus 42 i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 70 (98)
+...+..-++..+...++++++.++-..+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAEL 48 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 44555555555555556666665555554
No 174
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.87 E-value=78 Score=18.16 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=5.7
Q ss_pred cHHHHHHHHHHHH
Q 043768 79 ADKEIDELVKYAA 91 (98)
Q Consensus 79 ~~~ef~~~l~~~~ 91 (98)
+-++...++..+.
T Consensus 97 s~E~l~~Ildiv~ 109 (114)
T COG1460 97 SDEELDKILDIVD 109 (114)
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444433
No 175
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.97 E-value=1.3e+02 Score=21.01 Aligned_cols=10 Identities=20% Similarity=0.159 Sum_probs=4.5
Q ss_pred cHHHHHHHHH
Q 043768 23 TKEQLKGMFW 32 (98)
Q Consensus 23 ~~~~l~~~f~ 32 (98)
.-|+|+..+.
T Consensus 9 ~LeeLe~kLa 18 (379)
T PF11593_consen 9 KLEELEEKLA 18 (379)
T ss_pred cHHHHHHHHh
Confidence 3344444444
No 176
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=37.71 E-value=21 Score=26.84 Aligned_cols=62 Identities=24% Similarity=0.277 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCH---------HHHHHHHHhhCCCCC-----------------------
Q 043768 28 KGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPG---------WRAKRALRYADDNGD----------------------- 75 (98)
Q Consensus 28 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~---------~~~~~~~~~~d~~~~----------------------- 75 (98)
.+++..+|.+.++++++.++......++.-... -+...++..+|..++
T Consensus 440 ~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~ 519 (975)
T KOG2419|consen 440 KRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSF 519 (975)
T ss_pred hhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccccc
Confidence 566778888889988887776665544211111 124567888888888
Q ss_pred CcccHHHHHHHHHH
Q 043768 76 GFLADKEIDELVKY 89 (98)
Q Consensus 76 g~i~~~ef~~~l~~ 89 (98)
|.++.+|.+.++..
T Consensus 520 ~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 520 GVVTVDELVALLAL 533 (975)
T ss_pred CeeEHHHHHHHHHH
Confidence 88999998888774
No 177
>PLN02230 phosphoinositide phospholipase C 4
Probab=37.10 E-value=65 Score=23.92 Aligned_cols=32 Identities=9% Similarity=0.201 Sum_probs=22.4
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 59 PGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 59 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
+..++..+|..+..++ +.++.++|..++...+
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 4567778888875443 6788888888776654
No 178
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=36.49 E-value=68 Score=16.80 Aligned_cols=42 Identities=31% Similarity=0.284 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHhhCCC-CCCcccHHHHHHHH
Q 043768 44 RQELEDAFSYLGAYIPGWRAKRALRYADDN-GDGFLADKEIDELV 87 (98)
Q Consensus 44 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~l 87 (98)
..+|...| .|.++..+.+...+..++.. .-+.++.+||.+++
T Consensus 44 i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 45555544 36667888888888887543 33568888887764
No 179
>PF14178 YppF: YppF-like protein
Probab=35.64 E-value=60 Score=16.34 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=14.2
Q ss_pred CcccHHHHHHHHHHHHhcC
Q 043768 76 GFLADKEIDELVKYAAQFG 94 (98)
Q Consensus 76 g~i~~~ef~~~l~~~~~~g 94 (98)
|.|+..+|..+++.+-+.|
T Consensus 35 gei~i~eYR~lvreLE~~G 53 (60)
T PF14178_consen 35 GEISINEYRNLVRELEANG 53 (60)
T ss_pred CcccHHHHHHHHHHHHHhC
Confidence 5688888888888776443
No 180
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=34.49 E-value=92 Score=17.76 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=33.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhC
Q 043768 30 MFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYAD 71 (98)
Q Consensus 30 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 71 (98)
.+..+-..++..++..++..+|...+..+....+..+++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 344444566777899999999999998888888888888775
No 181
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=34.07 E-value=98 Score=18.85 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=35.7
Q ss_pred HHHHHHhhcC----CCCC-cccHHHHHHHHHhhC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 27 LKGMFWRCDK----NGDG-RLSRQELEDAFSYLG----AYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 27 l~~~f~~~d~----~~~g-~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
+.+.|+.|.. ..+| .++-..+..+|...+ ..++.-.+.-.|..+-...-..++|++|...+..+.
T Consensus 14 ~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 14 LEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred HHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 4444444433 3333 355556666666542 333333444455555545556788888887777665
No 182
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=33.36 E-value=72 Score=16.52 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=12.5
Q ss_pred CCCcccHHHHHHHHHh
Q 043768 38 GDGRLSRQELEDAFSY 53 (98)
Q Consensus 38 ~~g~i~~~el~~~l~~ 53 (98)
..|++..+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4688888888888765
No 183
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=33.31 E-value=93 Score=21.17 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=21.3
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCcc
Q 043768 73 NGDGFLADKEIDELVKYAAQFGYTL 97 (98)
Q Consensus 73 ~~~g~i~~~ef~~~l~~~~~~g~~~ 97 (98)
..+|..+.+|+..++.+....|++|
T Consensus 62 ~~~~~YT~~di~eiv~yA~~rgI~v 86 (348)
T cd06562 62 SPSEVYTPEDVKEIVEYARLRGIRV 86 (348)
T ss_pred CCCceECHHHHHHHHHHHHHcCCEE
Confidence 3467899999999999999988876
No 184
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=33.14 E-value=76 Score=16.40 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=5.5
Q ss_pred ccHHHHHHHHHh
Q 043768 42 LSRQELEDAFSY 53 (98)
Q Consensus 42 i~~~el~~~l~~ 53 (98)
-+..+|+..|..
T Consensus 7 ~~~~eLk~~L~~ 18 (76)
T PF07624_consen 7 EGAAELKQYLAE 18 (76)
T ss_pred CCHHHHHHHHHH
Confidence 344445544443
No 185
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=32.90 E-value=9.9 Score=16.30 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=9.7
Q ss_pred HHHHhhCCCCCCcccHH
Q 043768 65 RALRYADDNGDGFLADK 81 (98)
Q Consensus 65 ~~~~~~d~~~~g~i~~~ 81 (98)
.++..-|.+++-+|+.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 34555566666666543
No 186
>COG5562 Phage envelope protein [General function prediction only]
Probab=31.91 E-value=20 Score=21.16 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=19.0
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 66 ALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 66 ~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
+-..+.....|..+|++|..-+...+
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~AG 102 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAEAG 102 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHhCC
Confidence 34445566788999999998887654
No 187
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=31.79 E-value=1.5e+02 Score=19.30 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=26.7
Q ss_pred CCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCC---cccHHHHHHHHHHHHhcCCc
Q 043768 37 NGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDG---FLADKEIDELVKYAAQFGYT 96 (98)
Q Consensus 37 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g---~i~~~ef~~~l~~~~~~g~~ 96 (98)
.+.+.++.+++...-+++ .-+.++...|+..... .-.++....++..++.+|..
T Consensus 158 ~n~~~l~~ed~~rY~~Q~------~~v~~I~~~fE~~~~~d~~~~~~~~i~~lmqemQ~~G~P 214 (248)
T PF04614_consen 158 ENKSKLSAEDYERYEKQY------ELVKEICAIFEKPPYDDEDPERREKIMELMQEMQELGQP 214 (248)
T ss_dssp HHCCCS-HHHHHHHHHHH------HHHHHHHHHHHH--TT--HHHHHHHHHHHHHHHHHT---
T ss_pred hCcCcCCHHHHHHHHHHH------HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHcCCC
Confidence 344466666655555443 2244455555543222 35566777777777777764
No 188
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=31.44 E-value=56 Score=21.35 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=20.2
Q ss_pred CCCCCcccHHHHHHHHHHHH-hcCCccC
Q 043768 72 DNGDGFLADKEIDELVKYAA-QFGYTLS 98 (98)
Q Consensus 72 ~~~~g~i~~~ef~~~l~~~~-~~g~~~~ 98 (98)
.+.+|.|-+..|.+.++++. ..|+.|+
T Consensus 65 m~srg~VPl~kf~d~lK~lke~~~l~in 92 (275)
T COG1856 65 MDSRGKVPLWKFKDELKALKERTGLLIN 92 (275)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhCeEEE
Confidence 34567888889999998887 5676653
No 189
>PHA00003 B internal scaffolding protein
Probab=30.71 E-value=61 Score=18.41 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=35.3
Q ss_pred ccHHHHHHHHH-hhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH-HHHhcCC
Q 043768 42 LSRQELEDAFS-YLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVK-YAAQFGY 95 (98)
Q Consensus 42 i~~~el~~~l~-~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~-~~~~~g~ 95 (98)
++.+.-+.++. .+|.-...+.-.+++..+|.+ +-.|...||+.+=. .+.+|||
T Consensus 65 ~~iEagk~~c~RrFGgAtcddksa~iya~FD~~-d~rVQpaEFYRFnD~ei~k~GY 119 (120)
T PHA00003 65 ADIEAGKAICARRFGGATCDDKSAKIYAQFDPN-DRRVQPAEFYRFNDGEINKYGY 119 (120)
T ss_pred HHHHHHHHHHHHHcCCCCcchHHHHHhcccCcc-cceechhHheecccchhhhccc
Confidence 34444444443 456666667777789999976 45799999987744 4557775
No 190
>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.61 E-value=33 Score=20.93 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhcCCcc
Q 043768 81 KEIDELVKYAAQFGYTL 97 (98)
Q Consensus 81 ~ef~~~l~~~~~~g~~~ 97 (98)
+++..+=..+.+||+.|
T Consensus 37 ed~e~Vn~qLdkMGyNi 53 (183)
T KOG3330|consen 37 EDPEDVNKQLDKMGYNI 53 (183)
T ss_pred cCHHHHHHHHHhccchh
Confidence 34445555566666654
No 191
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=29.95 E-value=69 Score=14.93 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRY 69 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 69 (98)
..|..+|.. +.+.+..++..+...++ ++...+..+|..
T Consensus 13 ~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 13 EELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 345666665 55788888888888876 677788877754
No 192
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=29.90 E-value=80 Score=18.55 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=19.9
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCc
Q 043768 73 NGDGFLADKEIDELVKYAAQFGYT 96 (98)
Q Consensus 73 ~~~g~i~~~ef~~~l~~~~~~g~~ 96 (98)
..|+.+.|+++..++..+.+.|+.
T Consensus 103 ~aD~~v~y~~vv~vm~~l~~aG~~ 126 (137)
T COG0848 103 RADKNVKYGTVVKVMDLLKEAGFK 126 (137)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCc
Confidence 456789999999999999877753
No 193
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=29.63 E-value=1.9e+02 Score=20.67 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=32.3
Q ss_pred CCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q 043768 39 DGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEI 83 (98)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 83 (98)
.-.+.+..|.+++.......+.-++..+-...|..++++|+.=||
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEF 232 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEF 232 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehh
Confidence 446778888888887655455566677777888899998864443
No 194
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=29.44 E-value=27 Score=19.88 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=9.3
Q ss_pred CCCcccHHHHHHHHHhh
Q 043768 38 GDGRLSRQELEDAFSYL 54 (98)
Q Consensus 38 ~~g~i~~~el~~~l~~~ 54 (98)
-||.++..|...+...+
T Consensus 36 aDG~v~~~E~~~i~~~~ 52 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLL 52 (140)
T ss_dssp TTSS--CHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 46777777766555443
No 195
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=27.91 E-value=36 Score=18.17 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=15.3
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHH
Q 043768 68 RYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 68 ~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
+.+..+.+...+|++|..++..+-
T Consensus 12 RRFsl~r~~~~~f~ef~~ll~~lH 35 (80)
T cd06403 12 RRFSLDRNKPGKFEDFYKLLEHLH 35 (80)
T ss_pred EEEEeccccCcCHHHHHHHHHHHh
Confidence 334444555677888888877654
No 196
>PHA02105 hypothetical protein
Probab=27.35 E-value=93 Score=15.57 Aligned_cols=51 Identities=10% Similarity=0.011 Sum_probs=26.7
Q ss_pred cccHHHHHHHHHhh---CCCCCHHHHHHHHHhhCCCCC--CcccHHHHHHHHHHHH
Q 043768 41 RLSRQELEDAFSYL---GAYIPGWRAKRALRYADDNGD--GFLADKEIDELVKYAA 91 (98)
Q Consensus 41 ~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~~--g~i~~~ef~~~l~~~~ 91 (98)
+++.+|+..++..- ..++..+-+.++-..+...+- -.++++||-..+-.+.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ip 59 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFIP 59 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccccc
Confidence 35666666666542 333444444444333333333 2468888877765443
No 197
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=27.14 E-value=1.3e+02 Score=17.01 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhc
Q 043768 58 IPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQF 93 (98)
Q Consensus 58 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 93 (98)
-+.++++.++.... ..++-+++..++..+.++
T Consensus 79 ~~~dElrai~~~~~----~~~~~e~l~~ILd~l~k~ 110 (112)
T PRK14981 79 ETRDELRAIFAKER----YTLSPEELDEILDIVKKY 110 (112)
T ss_pred CCHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHh
Confidence 44566777776552 356677777777766543
No 198
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=26.52 E-value=41 Score=18.28 Aligned_cols=15 Identities=13% Similarity=0.512 Sum_probs=11.1
Q ss_pred CCCCCcccHHHHHHH
Q 043768 36 KNGDGRLSRQELEDA 50 (98)
Q Consensus 36 ~~~~g~i~~~el~~~ 50 (98)
.++.|+||...++++
T Consensus 70 dD~gGWITPsNIkqi 84 (87)
T PF15017_consen 70 DDGGGWITPSNIKQI 84 (87)
T ss_pred CCCCccccchhhhhh
Confidence 345689998887765
No 199
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=26.33 E-value=1e+02 Score=17.10 Aligned_cols=60 Identities=12% Similarity=0.212 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh
Q 043768 24 KEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQ 92 (98)
Q Consensus 24 ~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 92 (98)
.+.+..+...+..- | ++..+..+++... +-+..++..++...+ .+++-++...++..+.+
T Consensus 56 ~e~~~~l~~~L~~~--~-L~~~E~~qi~Nl~--P~~~~El~~ii~~~~----~r~~ee~l~~iL~~v~~ 115 (117)
T PF03874_consen 56 PESIKELREELKKF--G-LTEFEILQIINLR--PTTAVELRAIIESLE----SRFSEEDLEEILDLVSK 115 (117)
T ss_dssp HHHHHHHHHHHTTS--T-S-HHHHHHHHHH----SSHHHHHHHSTTGT----TTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--c-CCHHHHHHHhcCC--CCCHHHHHHHHHHhc----cCCCHHHHHHHHHHHHH
Confidence 34444444444321 2 5666665555542 233455555554443 35666777777766553
No 200
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=26.22 E-value=50 Score=22.69 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=16.4
Q ss_pred hhcCCCCCcccHHHHHHHHHh
Q 043768 33 RCDKNGDGRLSRQELEDAFSY 53 (98)
Q Consensus 33 ~~d~~~~g~i~~~el~~~l~~ 53 (98)
..++..+|+++.+++...+..
T Consensus 103 ~~~~g~~Gklt~e~v~~~i~~ 123 (342)
T COG2008 103 PIVPGADGKLTPEDVEAAIRP 123 (342)
T ss_pred ccCCCCCCCcCHHHHHHhhcC
Confidence 445668899999999887764
No 201
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=26.07 E-value=85 Score=14.70 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=21.7
Q ss_pred CCcccHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 043768 39 DGRLSRQELEDAFSYLGAYIPGWRAKRALRY 69 (98)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 69 (98)
+.+++..+...+...++ ++...+..+|..
T Consensus 22 ~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 22 NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred hcccccccccccccccc--ccccccccCHHH
Confidence 67778888888777775 677778777753
No 202
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=25.59 E-value=81 Score=19.76 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCC
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYLGA 56 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~ 56 (98)
+.++++|..||++.--..+.+++..++...+.
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch
Confidence 55788999999888777888888887776543
No 203
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.55 E-value=90 Score=21.96 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 043768 60 GWRAKRALRYADDNGDGFLADKEIDELVKYA 90 (98)
Q Consensus 60 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 90 (98)
.++++..|..+|..++|.|+..-|..++..+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 5679999999999999999988888887754
No 204
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=24.75 E-value=1.1e+02 Score=22.02 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=39.0
Q ss_pred CCCCcccHHHHHHHHHh---hC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 37 NGDGRLSRQELEDAFSY---LG-AYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 37 ~~~g~i~~~el~~~l~~---~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
.++...+..||+.+..- ++ ..+.-+.++.+.+.+|.|.+|.|+.+|--.++..-.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdm 98 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDM 98 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHh
Confidence 45556666666554321 22 445567889999999999999999998888777543
No 205
>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]
Probab=24.62 E-value=1.2e+02 Score=22.69 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=36.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCc--ccHHHHHHHHHHHHh
Q 043768 30 MFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGF--LADKEIDELVKYAAQ 92 (98)
Q Consensus 30 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~--i~~~ef~~~l~~~~~ 92 (98)
+|+..|.|+.-+++...+.++|..+.-+..+ -+.....|+... |+|.|+..++.....
T Consensus 591 lFHqvtedg~p~lDlaHvl~CLNKLDAG~~E-----kI~LvSrDE~t~IIvSY~ELK~~le~t~~ 650 (655)
T KOG3741|consen 591 LFHQVTEDGKPWLDLAHVLQCLNKLDAGIQE-----KILLVSRDELTCIIVSYKELKTILEKTFR 650 (655)
T ss_pred hheEeccCCChhhhHHHHHHHhhhccccchh-----heeEeccCCCcEEEEEHHHHHHHHHHhhc
Confidence 3556666677778888888888776543322 233444444444 588888887765443
No 206
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=24.56 E-value=1.1e+02 Score=15.97 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=26.3
Q ss_pred CCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcc
Q 043768 39 DGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFL 78 (98)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i 78 (98)
|..=+++....+|.... ..+.++...+....+..|...|
T Consensus 14 De~ht~~~Vi~~L~~~~-~~s~~~A~~~a~~v~~~G~avv 52 (82)
T PF02617_consen 14 DEVHTFEQVIDVLRRVF-GCSEEQARQIAMEVHREGRAVV 52 (82)
T ss_dssp -SSSBHHHHHHHHHHHC----HHHHHHHHHHHHHHSEEEE
T ss_pred CCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHhHcCCEee
Confidence 34446777777887754 5888888888888888877654
No 207
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=24.45 E-value=1.3e+02 Score=16.29 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=35.3
Q ss_pred CCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 37 NGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 37 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
-++|.|+-++...+... +.+.+.+++++..+... |....+-|..++..++
T Consensus 25 l~n~~it~E~y~~V~a~---~T~qdkmRkLld~v~ak--G~~~k~~F~~iL~e~~ 74 (85)
T cd08324 25 LKNDYFSTEDAEIVCAC---PTQPDKVRKILDLVQSK--GEEVSEYFLYLLQQLA 74 (85)
T ss_pred hccCCccHHHHHHHHhC---CCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHH
Confidence 36789998885544332 46778899999886654 4456677888887765
No 208
>smart00642 Aamy Alpha-amylase domain.
Probab=24.23 E-value=1.5e+02 Score=17.84 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=19.0
Q ss_pred CCCCCCcccHHHHHHHHHHHHhcCCc
Q 043768 71 DDNGDGFLADKEIDELVKYAAQFGYT 96 (98)
Q Consensus 71 d~~~~g~i~~~ef~~~l~~~~~~g~~ 96 (98)
+.++++.-+++...+-+.++..+|++
T Consensus 9 ~~~~~~~G~~~gi~~~l~yl~~lG~~ 34 (166)
T smart00642 9 DGNGDGGGDLQGIIEKLDYLKDLGVT 34 (166)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHCCCC
Confidence 44566667788888888888888765
No 209
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=23.74 E-value=1.6e+02 Score=21.86 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
....+.++.+....+++.+|.+++++|..++..+
T Consensus 53 ~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 53 YFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred chhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3446778888999999999999999988766543
No 210
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=23.68 E-value=1.1e+02 Score=16.33 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=7.0
Q ss_pred HHhhCCCCCCcccHH
Q 043768 67 LRYADDNGDGFLADK 81 (98)
Q Consensus 67 ~~~~d~~~~g~i~~~ 81 (98)
.+..+.+.+|.|..+
T Consensus 29 ~~~~~~~~dG~Vpl~ 43 (82)
T cd08032 29 REQIEKSRDGYIDIS 43 (82)
T ss_pred HHHhcCCCCCCEeHH
Confidence 334444445555444
No 211
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=23.55 E-value=95 Score=14.35 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=20.4
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHH
Q 043768 45 QELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKE 82 (98)
Q Consensus 45 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 82 (98)
+|...++..+| ++..++..++..+.. ...++.++
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~ 37 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEE 37 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHH
Confidence 45666777776 666778888777754 22344554
No 212
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=23.46 E-value=1.9e+02 Score=17.86 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh
Q 043768 37 NGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAAQ 92 (98)
Q Consensus 37 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 92 (98)
-..|+++..+...+|..-...+....++.+=..+ .|+.++..+++.++..
T Consensus 113 vPkGkltl~qal~lL~~Hq~~P~~WtaekIA~eY------~L~~~dv~~iL~yF~~ 162 (179)
T PF06784_consen 113 VPKGKLTLRQALELLNNHQLDPETWTAEKIAQEY------KLDEKDVKNILKYFKP 162 (179)
T ss_pred CCCCceeHHHHHHHHHHhccCccccCHHHHHHHh------CCCHHHHHHHHHhcCC
Confidence 3679999998888887654333322233333333 3566666677766543
No 213
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=23.38 E-value=1.6e+02 Score=17.05 Aligned_cols=46 Identities=9% Similarity=0.132 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhh-CCCCCHHHHHHHHHhhCCC
Q 043768 25 EQLKGMFWRCDKNGDGRLSRQELEDAFSYL-GAYIPGWRAKRALRYADDN 73 (98)
Q Consensus 25 ~~l~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~ 73 (98)
+.+..+|.+|- ++.|+.+.++.++... |..++..++..+...+-.+
T Consensus 37 ~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~n 83 (122)
T PF06648_consen 37 DKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYNN 83 (122)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHcc
Confidence 45666777665 4778888888888865 3567877776665554433
No 214
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=22.84 E-value=1.1e+02 Score=19.25 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=20.1
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhh
Q 043768 30 MFWRCDKNGDGRLSRQELEDAFSYL 54 (98)
Q Consensus 30 ~f~~~d~~~~g~i~~~el~~~l~~~ 54 (98)
+..-+|.+++|.++.+|+..+....
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3446789999999999998887754
No 215
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=22.09 E-value=1.6e+02 Score=16.59 Aligned_cols=42 Identities=7% Similarity=0.177 Sum_probs=32.5
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhC
Q 043768 30 MFWRCDKNGDGRLSRQELEDAFSYLGAYIPGWRAKRALRYAD 71 (98)
Q Consensus 30 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 71 (98)
.|..+-..++..+|.+++..++...+.......+..+++.+.
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 344444566778999999999999998888877777777765
No 216
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.89 E-value=1.5e+02 Score=21.23 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 043768 21 PYTKEQLKGMFWRCDKNGDGRLSRQELEDAFS 52 (98)
Q Consensus 21 ~~~~~~l~~~f~~~d~~~~g~i~~~el~~~l~ 52 (98)
.++-.-+.++|...|.|.+|.++.+||.-+-.
T Consensus 473 klpnsvlgkiwklad~d~dg~ld~eefala~h 504 (532)
T KOG1954|consen 473 KLPNSVLGKIWKLADIDKDGMLDDEEFALANH 504 (532)
T ss_pred cCchhHHHhhhhhhcCCcccCcCHHHHHHHHH
Confidence 34445679999999999999999999865543
No 217
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.67 E-value=1.4e+02 Score=19.51 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=10.2
Q ss_pred CCcccHHHHHHHHHHHHhc
Q 043768 75 DGFLADKEIDELVKYAAQF 93 (98)
Q Consensus 75 ~g~i~~~ef~~~l~~~~~~ 93 (98)
+|.|+++.+...+.++...
T Consensus 16 dg~iD~~~l~~~i~~l~~~ 34 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIAN 34 (292)
T ss_pred CCCcCHHHHHHHHHHHHHc
Confidence 3456666666555555433
No 218
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=21.53 E-value=1.2e+02 Score=15.00 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=10.6
Q ss_pred HHhhcCCCCCcccHHHHHH
Q 043768 31 FWRCDKNGDGRLSRQELED 49 (98)
Q Consensus 31 f~~~d~~~~g~i~~~el~~ 49 (98)
....+.+++|+|+...+..
T Consensus 21 ~~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 21 RSQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHHCTTTTTBEEHHHHTT
T ss_pred HHHHHhcCCCcEeHHHHHc
Confidence 3445555667777665443
No 219
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.29 E-value=1.5e+02 Score=19.20 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=7.5
Q ss_pred CcccHHHHHHHHHHHH
Q 043768 76 GFLADKEIDELVKYAA 91 (98)
Q Consensus 76 g~i~~~ef~~~l~~~~ 91 (98)
|.|+++.+...+.++.
T Consensus 13 g~iD~~~~~~~i~~l~ 28 (281)
T cd00408 13 GEVDLDALRRLVEFLI 28 (281)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 3455554444444443
No 220
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=21.19 E-value=1.5e+02 Score=19.28 Aligned_cols=17 Identities=12% Similarity=0.419 Sum_probs=8.9
Q ss_pred CcccHHHHHHHHHHHHh
Q 043768 76 GFLADKEIDELVKYAAQ 92 (98)
Q Consensus 76 g~i~~~ef~~~l~~~~~ 92 (98)
|.|+++.+...+.++..
T Consensus 16 g~iD~~~~~~~i~~l~~ 32 (284)
T cd00950 16 GSVDFDALERLIEFQIE 32 (284)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 44555555555555443
No 221
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=21.13 E-value=2.6e+02 Score=22.00 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=31.2
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCC
Q 043768 23 TKEQLKGMFWRCDKNGDGRLSRQELEDAFSYLGAYIP 59 (98)
Q Consensus 23 ~~~~l~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~ 59 (98)
.+.+++++++.+.+-++++-+++-+..+...++..+.
T Consensus 712 tERRiQrlykvleP~gdsrpDW~Iiq~vA~~lG~~wn 748 (978)
T COG3383 712 TERRIQRLYKVLEPLGDSRPDWEIIQEVANALGAGWN 748 (978)
T ss_pred hHHHHHHHHHHhccccCCCccHHHHHHHHHHhcCCCC
Confidence 3567899999999999999999999988888876554
No 222
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=21.02 E-value=1.5e+02 Score=15.63 Aligned_cols=49 Identities=4% Similarity=0.123 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 043768 38 GDGRLSRQELEDAFSYLGAYIPGWRAKRALRYADDNGDGFLADKEIDELVKYAA 91 (98)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 91 (98)
+.|.|+.++...+-.. +.+.+.++.++..+... |...+..|...+....
T Consensus 26 ~~~Vit~e~~~~I~a~---~T~~~kar~Lld~l~~k--G~~A~~~F~~~L~e~~ 74 (82)
T cd08330 26 GKKVITQEQYSEVRAE---KTNQEKMRKLFSFVRSW--GASCKDIFYQILREEE 74 (82)
T ss_pred HCCCCCHHHHHHHHcC---CCcHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhC
Confidence 4578887776554442 36677888899887764 5577888888887554
No 223
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=20.92 E-value=1.5e+02 Score=19.54 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=7.6
Q ss_pred CcccHHHHHHHHHHHH
Q 043768 76 GFLADKEIDELVKYAA 91 (98)
Q Consensus 76 g~i~~~ef~~~l~~~~ 91 (98)
|.|+++.+..++.++.
T Consensus 21 g~iD~~~l~~li~~l~ 36 (296)
T TIGR03249 21 GSFDEAAYRENIEWLL 36 (296)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 3455555555544443
No 224
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.80 E-value=1.5e+02 Score=19.33 Aligned_cols=16 Identities=13% Similarity=0.393 Sum_probs=7.9
Q ss_pred CcccHHHHHHHHHHHH
Q 043768 76 GFLADKEIDELVKYAA 91 (98)
Q Consensus 76 g~i~~~ef~~~l~~~~ 91 (98)
|.|+++.+...+.++.
T Consensus 14 g~iD~~~~~~~i~~l~ 29 (285)
T TIGR00674 14 GSVDFAALEKLIDFQI 29 (285)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 4455555555555443
No 225
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=20.50 E-value=1.6e+02 Score=19.40 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=7.7
Q ss_pred CcccHHHHHHHHHHHH
Q 043768 76 GFLADKEIDELVKYAA 91 (98)
Q Consensus 76 g~i~~~ef~~~l~~~~ 91 (98)
|.|+++.+..++.++.
T Consensus 16 g~iD~~~l~~l~~~l~ 31 (289)
T cd00951 16 GSFDEDAYRAHVEWLL 31 (289)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 3455555555544443
No 226
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=20.31 E-value=1.6e+02 Score=15.83 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=6.9
Q ss_pred ccHHHHHHHH
Q 043768 78 LADKEIDELV 87 (98)
Q Consensus 78 i~~~ef~~~l 87 (98)
|+.+||...+
T Consensus 77 it~~e~~~al 86 (87)
T PF13331_consen 77 ITREEFEEAL 86 (87)
T ss_pred CCHHHHHHHh
Confidence 7777776654
No 227
>PLN02417 dihydrodipicolinate synthase
Probab=20.04 E-value=1.7e+02 Score=19.23 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=7.7
Q ss_pred CcccHHHHHHHHHHHH
Q 043768 76 GFLADKEIDELVKYAA 91 (98)
Q Consensus 76 g~i~~~ef~~~l~~~~ 91 (98)
|.|+++.+..++.++.
T Consensus 17 g~iD~~~~~~~i~~l~ 32 (280)
T PLN02417 17 GRFDLEAYDSLVNMQI 32 (280)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 3455555555554443
Done!