BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043774
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 254 bits (649), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 131/223 (58%), Positives = 160/223 (71%), Gaps = 5/223 (2%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP+S+DWRK+G VT VKDQG+CG CW+F TGAIEGI+A+ TG LIS+SEQ++VDCDT
Sbjct: 1 APASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXX 60
Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249
GG D AF WVI NGGI ++++YPYTGVDGTC++ K IDGY +V S SA
Sbjct: 61 XXXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKP--IAARIDGYTNVPNSSSA 118
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTS-GIYNG-DCSNDPYYIDHAVLIVGYGSE-NGEDY 306
LL A +QP+SV + S++ FQLYT GI+ G CS+DP +DH VLIVGYGS DY
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADY 178
Query: 307 WIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKES 349
WIVKNSWGT WGIDGY I R+T+ G CAI+A SYP K +
Sbjct: 179 WIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTKST 221
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 248 bits (632), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 187/328 (57%), Gaps = 11/328 (3%)
Query: 21 EHSIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNP 80
+ SI+G+ N+ S ER+ +LF+ W KH K YK+ +E RF FK+NL+Y+ E
Sbjct: 45 DFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKN 104
Query: 81 GGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRG 140
+ +GLN FADMSN+EF+E Y I + + L+ P +DWR++G
Sbjct: 105 NSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDG--DVNIPEYVDWRQKG 162
Query: 141 IVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYA 200
VTPVK+QGSCGS W+FS IE I + TG+L SEQEL+DCD SYGC+GGY A
Sbjct: 163 AVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSA 222
Query: 201 FEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSALLCAAVQQPI 259
+ V GI + YPY GV C ++ DG + V+P ++ ALL + QP+
Sbjct: 223 LQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPV 281
Query: 260 SVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGI 319
SV + + DFQLY GI+ G C N +DHAV VGYG +Y +++NSWGT WG
Sbjct: 282 SVVLEAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGYGP----NYILIRNSWGTGWGE 334
Query: 320 DGYFYITRDTSLEYGKCAINAMASYPIK 347
+GY I R T YG C + + YP+K
Sbjct: 335 NGYIRIKRGTGNSYGVCGLYTSSFYPVK 362
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 155/221 (70%), Gaps = 5/221 (2%)
Query: 129 EAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT 188
+ P S+DWR+ G V PVK+QG CGSCW+FST A+EGIN +VTGDLISLSEQ+LVDC T
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA 61
Query: 189 SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SD 247
++GC GG+M+ AF++++NNGGI++E YPY G DG CN T VVSID Y++V ++
Sbjct: 62 NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTV-NAPVVSIDSYENVPSHNE 120
Query: 248 SALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYW 307
+L A QP+SV M + DFQLY SGI+ G C+ +HA+ +VGYG+EN +D+W
Sbjct: 121 QSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCN---ISANHALTVVGYGTENDKDFW 177
Query: 308 IVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKE 348
IVKNSWG +WG GY R+ GKC I ASYP+K+
Sbjct: 178 IVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKK 218
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/222 (54%), Positives = 154/222 (69%), Gaps = 6/222 (2%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDT-TS 189
P+S+DWRK+G VT VKDQG CGSCW+FST A+EGIN + T L+SLSEQELVDCDT +
Sbjct: 3 PASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQN 62
Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD-S 248
GC+GG MDYAFE++ GGI TE++YPY DGTC+++KE VSIDG+++V +D +
Sbjct: 63 QGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDEN 122
Query: 249 ALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSE-NGEDYW 307
ALL A QP+SV + SDFQ Y+ G++ G C + +DH V IVGYG+ +G YW
Sbjct: 123 ALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTE---LDHGVAIVGYGTTIDGTKYW 179
Query: 308 IVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKES 349
VKNSWG WG GY + R S + G C I ASYPIK+S
Sbjct: 180 TVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKS 221
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 183/328 (55%), Gaps = 8/328 (2%)
Query: 21 EHSIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNP 80
+ SI+G+ ++ S ER+ +LF W H K Y++ +E RF FK+NL Y+ E
Sbjct: 1 DFSIVGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKN 60
Query: 81 GGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRG 140
+ +GLN+FAD+SN+EF E Y+ + I I + P ++DWRK+G
Sbjct: 61 NSYWLGLNEFADLSNDEFNEKYVGSL---IDATIEQSYDEEFINEDIVNLPENVDWRKKG 117
Query: 141 IVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYA 200
VTPV+ QGSCGSCW+FS +EGIN + TG L+ LSEQELVDC+ S+GC GGY YA
Sbjct: 118 AVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYA 177
Query: 201 FEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA-LLCAAVQQPI 259
E+V N GI S YPY GTC + +V G V+P++ LL A +QP+
Sbjct: 178 LEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPV 236
Query: 260 SVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGI 319
SV + FQLY GI+ G C +D AV VGYG G+ Y ++KNSWGT+WG
Sbjct: 237 SVVVESKGRPFQLYKGGIFEGPCGTK---VDGAVTAVGYGKSGGKGYILIKNSWGTAWGE 293
Query: 320 DGYFYITRDTSLEYGKCAINAMASYPIK 347
GY I R G C + + YP K
Sbjct: 294 KGYIRIKRAPGNSPGVCGLYKSSYYPTK 321
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/220 (54%), Positives = 153/220 (69%), Gaps = 7/220 (3%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-- 188
P +DWR G V +KDQG CGSCW+FST A+EGIN + TGDLISLSEQELVDC T
Sbjct: 2 PDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQN 61
Query: 189 SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDS 248
+ GCDGG+M F+++INNGGI+TE++YPYT +G CN+ ++ K VSID Y++V ++
Sbjct: 62 TRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNE 121
Query: 249 -ALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYW 307
AL A QP+SV + + +FQ Y+SGI+ G C +DHAV IVGYG+E G DYW
Sbjct: 122 WALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTA---VDHAVTIVGYGTEGGIDYW 178
Query: 308 IVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
IVKNSWGT+WG +GY I R+ G+C I ASYP+K
Sbjct: 179 IVKNSWGTTWGEEGYMRIQRNVG-GVGQCGIAKKASYPVK 217
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 152/220 (69%), Gaps = 7/220 (3%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-- 188
P +DWR G V +KDQG CGS W+FST A+EGIN + TGDLISLSEQELVDC T
Sbjct: 2 PDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQN 61
Query: 189 SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDS 248
+ GCDGG+M F+++INNGGI+TE++YPYT +G CN+ ++ K VSID Y++V ++
Sbjct: 62 TRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNE 121
Query: 249 -ALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYW 307
AL A QP+SV + + +FQ Y+SGI+ G C +DHAV IVGYG+E G DYW
Sbjct: 122 WALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTA---VDHAVTIVGYGTEGGIDYW 178
Query: 308 IVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
IVKNSWGT+WG +GY I R+ G+C I ASYP+K
Sbjct: 179 IVKNSWGTTWGEEGYMRIQRNVG-GVGQCGIAKKASYPVK 217
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 152/218 (69%), Gaps = 6/218 (2%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
PS +DWR +G V +K+Q CGSCW+FS A+E IN + TG LISLSEQELVDCDT S+
Sbjct: 2 PSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASH 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDV-EPSDSA 249
GC+GG+M+ AF+++I NGGIDT+ +YPY+ V G+C + +VVSI+G++ V ++SA
Sbjct: 62 GCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYR--LRVVSINGFQRVTRNNESA 119
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
L A QP+SV + + + FQ Y+SGI+ G C +H V+IVGYG+++G++YWIV
Sbjct: 120 LQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQ---NHGVVIVGYGTQSGKNYWIV 176
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
+NSWG +WG GY ++ R+ + G C I + SYP K
Sbjct: 177 RNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK 214
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 147/223 (65%), Gaps = 9/223 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VKDQG CGSCW+FST ++EGINA+ TG L+SLSEQEL+DCDT
Sbjct: 5 PPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADN 64
Query: 191 -GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETK---VVSIDGYKDVEP- 245
GC GG MD AFE++ NNGG+ TE+ YPY GTCN+ + VV IDG++DV
Sbjct: 65 DGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPAN 124
Query: 246 SDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYG-SENGE 304
S+ L A QP+SV + S F Y+ G++ G+C + +DH V +VGYG +E+G+
Sbjct: 125 SEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTE---LDHGVAVVGYGVAEDGK 181
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
YW VKNSWG SWG GY + +D+ G C I ASYP+K
Sbjct: 182 AYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVK 224
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 145/220 (65%), Gaps = 7/220 (3%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-- 188
PS +DWR G V +K QG CG CW+FS +EGIN +VTG LISLSEQEL+DC T
Sbjct: 2 PSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQN 61
Query: 189 SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDS 248
+ GC+GGY+ F+++INNGGI+TE +YPYT DG CN+ + K V+ID Y++V ++
Sbjct: 62 TRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNNE 121
Query: 249 -ALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYW 307
AL A QP+SV + + F+ Y+SGI+ G C IDHAV IVGYG+E G DYW
Sbjct: 122 WALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTA---IDHAVTIVGYGTEGGIDYW 178
Query: 308 IVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
IVKNSW T+WG +GY I R+ G C I M SYP+K
Sbjct: 179 IVKNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYPVK 217
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 217 bits (553), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 148/228 (64%), Gaps = 11/228 (4%)
Query: 129 EAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT 188
+AP S DW K+G++T VK QG CGS W+FS TGAIE +A+ TG+L+SLSEQEL+DC
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 189 SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGY-------- 240
S GC G+ +FEWV+ +GGI +E+DYPY DG C + + K V+ID Y
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDK-VTIDNYGVQILSNE 119
Query: 241 KDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGS 300
++S+L ++QPISV + A DF Y+ GIY+G + PY I+H VLIVGYGS
Sbjct: 120 STESEAESSLQSFVLEQPISVSI--DAKDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGS 177
Query: 301 ENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKE 348
E+G DYWI KNSWG WGIDGY I R+T G C +N ASYPI E
Sbjct: 178 EDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 174/316 (55%), Gaps = 29/316 (9%)
Query: 44 RWKDKHGKAYKHTEEAERRF---RNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFRE 100
+WK H + Y EE RR +N K + E + + +N F DM++EEFR+
Sbjct: 10 KWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ 69
Query: 101 IYLKKIQKPIGKAIGNAKSNLHKTVQSC---EAPSSLDWRKRGIVTPVKDQGSCGSCWSF 157
+ + N K K Q EAP S+DWR++G VTPVK+QG CGS W+F
Sbjct: 70 VM---------NGLQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSSWAF 120
Query: 158 STTGAIEGINALVTGDLISLSEQELVDCD--TTSYGCDGGYMDYAFEWVINNGGIDTESD 215
S TGA+EG TG LISLSEQ LVDC + GC+GG MDYAF++V +NGG+D+E
Sbjct: 121 SATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEES 180
Query: 216 YPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCA-AVQQPISVGMVGSASDFQLYT 274
YPY + +C + + V + G+ D+ + AL+ A A PISV + F Y
Sbjct: 181 YPYEATEESCKYNPKYS-VANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYK 239
Query: 275 SGIY-NGDCSNDPYYIDHAVLIVGYGSE----NGEDYWIVKNSWGTSWGIDGYFYITRDT 329
GIY DCS++ +DH VL+VGYG E +G YW+VKNSWG WG+ GY + +D
Sbjct: 240 EGIYFEPDCSSED--MDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDR 297
Query: 330 SLEYGKCAINAMASYP 345
C I + ASYP
Sbjct: 298 R---NHCGIASAASYP 310
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 173/316 (54%), Gaps = 29/316 (9%)
Query: 44 RWKDKHGKAYKHTEEAERRF---RNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFRE 100
+WK H + Y EE RR +N K + E + + +N F DM++EEFR+
Sbjct: 14 KWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ 73
Query: 101 IYLKKIQKPIGKAIGNAKSNLHKTVQSC---EAPSSLDWRKRGIVTPVKDQGSCGSCWSF 157
+ N K K Q EAP S+DWR++G VTPVK+QG CGS W+F
Sbjct: 74 VM---------NGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSXWAF 124
Query: 158 STTGAIEGINALVTGDLISLSEQELVDCD--TTSYGCDGGYMDYAFEWVINNGGIDTESD 215
S TGA+EG TG LISLSEQ LVDC + GC+GG MDYAF++V +NGG+D+E
Sbjct: 125 SATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEES 184
Query: 216 YPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCA-AVQQPISVGMVGSASDFQLYT 274
YPY + +C + + V + G+ D+ + AL+ A A PISV + F Y
Sbjct: 185 YPYEATEESCKYNPKYS-VANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYK 243
Query: 275 SGIY-NGDCSNDPYYIDHAVLIVGYGSENGED----YWIVKNSWGTSWGIDGYFYITRDT 329
GIY DCS++ +DH VL+VGYG E+ E YW+VKNSWG WG+ GY + +D
Sbjct: 244 EGIYFEPDCSSED--MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 301
Query: 330 SLEYGKCAINAMASYP 345
C I + ASYP
Sbjct: 302 R---NHCGIASAASYP 314
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 144/220 (65%), Gaps = 7/220 (3%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-- 188
PS +DWR G V +K QG CG W+FS +EGIN + +G LISLSEQEL+DC T
Sbjct: 2 PSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQN 61
Query: 189 SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDS 248
+ GCDGGY+ F+++IN+GGI+TE +YPYT DG C++ ++ K V+ID Y++V ++
Sbjct: 62 TRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNNE 121
Query: 249 -ALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYW 307
AL A QP+SV + + F+ Y SGI+ G C +DHA++IVGYG+E G DYW
Sbjct: 122 WALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTA---VDHAIVIVGYGTEGGVDYW 178
Query: 308 IVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
IVKNSW T+WG +GY I R+ G C I M SYP+K
Sbjct: 179 IVKNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYPVK 217
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 207 bits (527), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 140/218 (64%), Gaps = 13/218 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P +DWRK+G VTPVK+QG CGSCW+FST +E IN + TG+LISLSEQ+LVDC+ ++
Sbjct: 2 PEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKNH 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSA 249
GC GG YA++++I+NGGIDTE++YPY V G C K KVV IDGYK V +++A
Sbjct: 62 GCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAK---KVVRIDGYKGVPHCNENA 118
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
L A QP V + S+ FQ Y SGI++G C ++H V+IVGY +DYWIV
Sbjct: 119 LKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTK---LNHGVVIVGY----WKDYWIV 171
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
+NSWG WG GY + R G C I + YP K
Sbjct: 172 RNSWGRYWGEQGYIRMKRVGGC--GLCGIARLPYYPTK 207
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 143/218 (65%), Gaps = 13/218 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P +DWRK+G VTPVK+QGSCGSCW+FST +E IN + TG+LISLSEQELVDCD ++
Sbjct: 2 PEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNH 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVE-PSDSA 249
GC GG +A++++INNGGIDT+++YPY V G C + +KVVSIDGY V ++ A
Sbjct: 62 GCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCNEXA 118
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
L A QP +V + S++ FQ Y+SGI++G C ++H V IVGY + +YWIV
Sbjct: 119 LKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTK---LNHGVTIVGYQA----NYWIV 171
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
+NSWG WG GY + R G C I + YP K
Sbjct: 172 RNSWGRYWGEKGYIRMLRVGGC--GLCGIARLPYYPTK 207
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 157/270 (58%), Gaps = 26/270 (9%)
Query: 87 LNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSC---EAPSSLDWRKRGIVT 143
+N F DM++EEFR++ N K K Q EAP S+DWR++G VT
Sbjct: 2 MNAFGDMTSEEFRQVM---------NGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVT 52
Query: 144 PVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD--TTSYGCDGGYMDYAF 201
PVK+QG CGSCW+FS TGA+EG TG LISLSEQ LVDC + GC+GG MDYAF
Sbjct: 53 PVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAF 112
Query: 202 EWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCA-AVQQPIS 260
++V +NGG+D+E YPY + +C + + V + G+ D+ + AL+ A A PIS
Sbjct: 113 QYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQEKALMKAVATVGPIS 171
Query: 261 VGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSENGED----YWIVKNSWGT 315
V + F Y GIY DCS++ +DH VL+VGYG E+ E YW+VKNSWG
Sbjct: 172 VAIDAGHESFLFYKEGIYFEPDCSSED--MDHGVLVVGYGFESTESDNNKYWLVKNSWGE 229
Query: 316 SWGIDGYFYITRDTSLEYGKCAINAMASYP 345
WG+ GY + +D C I + ASYP
Sbjct: 230 EWGMGGYVKMAKDRR---NHCGIASAASYP 256
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 135/218 (61%), Gaps = 5/218 (2%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR +G VTPVK+QG+CGS W+FST +EGIN +VTG+L+ LSEQELVDCD SY
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPS-DSA 249
GC GGY + ++V NN G+ T YPY C T + V I GYK V + +++
Sbjct: 62 GCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXETS 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
L A QP+SV + FQLY SG+++G C +DHAV VGYG+ +G++Y I+
Sbjct: 121 FLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTK---LDHAVTAVGYGTSDGKNYIII 177
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
KNSWG +WG GY + R + G C + + YP K
Sbjct: 178 KNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK 215
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 181/322 (56%), Gaps = 24/322 (7%)
Query: 35 EERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYV----VEKKNNPGGHVVGLNKF 90
EE + ++ WK H K Y + + R ++ NL+Y+ +E + + +N
Sbjct: 4 EEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHL 63
Query: 91 ADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCE----APSSLDWRKRGIVTPVK 146
DM++EE +QK G + + S + T+ E AP S+D+RK+G VTPVK
Sbjct: 64 GDMTSEEV-------VQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVK 116
Query: 147 DQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVIN 206
+QG CGSCW+FS+ GA+EG TG L++LS Q LVDC + + GC GGYM AF++V
Sbjct: 117 NQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQK 176
Query: 207 NGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQ--PISVGMV 264
N GID+E YPY G + +C + K GY+++ + L AV + P+SV +
Sbjct: 177 NRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 235
Query: 265 GSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYF 323
S + FQ Y+ G+ Y+ C++D ++HAVL VGYG + G +WI+KNSWG +WG GY
Sbjct: 236 ASLTSFQFYSKGVYYDESCNSDN--LNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYI 293
Query: 324 YITRDTSLEYGKCAINAMASYP 345
+ R+ + C I +AS+P
Sbjct: 294 LMARNKN---NACGIANLASFP 312
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 202 bits (513), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 125 VQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVD 184
V E P+ +DWR RG VTPVKDQ CGSCW+FSTTGA+EG + TG L+SLSEQEL+D
Sbjct: 2 VLPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMD 61
Query: 185 CDTT--SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKD 242
C + C GG M+ AF++V+++GGI +E YPY D C E KVV I G+KD
Sbjct: 62 CSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCE-KVVKILGFKD 120
Query: 243 V-EPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGS- 300
V S++A+ A + P+S+ + FQ Y G+++ C D +DH VL+VGYG+
Sbjct: 121 VPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTD---LDHGVLLVGYGTD 177
Query: 301 -ENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346
E+ +D+WI+KNSWGT WG DGY Y+ E G+C + AS+P+
Sbjct: 178 KESKKDFWIMKNSWGTGWGRDGYMYMAMHKG-EEGQCGLLLDASFPV 223
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 135/218 (61%), Gaps = 13/218 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P +DWR +G V P+K+QG CGSCW+FST +E IN + TG+LISLSEQ+LVDC ++
Sbjct: 2 PEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKNH 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDV-EPSDSA 249
GC GGY D A++++I NGGIDTE++YPY G C K KVV IDG K V + +++A
Sbjct: 62 GCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAK---KVVRIDGCKGVPQCNENA 118
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
L A QP V + S+ FQ Y GI+ G C ++H V+IVGY G+DYWIV
Sbjct: 119 LKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTK---LNHGVVIVGY----GKDYWIV 171
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
+NSWG WG GY + R G C I + YP K
Sbjct: 172 RNSWGRHWGEQGYTRMKRVGGC--GLCGIARLPFYPTK 207
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 177/328 (53%), Gaps = 36/328 (10%)
Query: 38 VFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVE--KKNNPG--GHVVGLNKFADM 93
V E ++ +K + ++Y + +E R + F+ LE E +K G + +G+N F DM
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 94 SNEEFREIYLKKIQKPIGKAIGNAKSNLHKT------------VQSCEAPSSLDWRKRGI 141
+ EE + Y + P ++LHK S P+S DWR +G+
Sbjct: 78 TPEEMK-AYTHGLIMP---------ADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGM 127
Query: 142 VTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLI--SLSEQELVDCDTTSYGCDGGYMDY 199
V+PVK+QGSCGS W+FS+TGAIE + G S+SEQ+LVDC + GC GG+M+
Sbjct: 128 VSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMND 187
Query: 200 AFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPI 259
AF +V NGGID+E YPY DG C+ + + GY + D +L V
Sbjct: 188 AFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQV-AARLSGYVYLSGPDENMLADMVATKG 246
Query: 260 SVGMVGSASD-FQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSW 317
V + A D F Y+ G+Y N C + + HAVLIVGYG+ENG+DYW+VKNSWG W
Sbjct: 247 PVAVAFDADDPFGSYSGGVYYNPTCETNKF--THAVLIVGYGNENGQDYWLVKNSWGDGW 304
Query: 318 GIDGYFYITRDTSLEYGKCAINAMASYP 345
G+DGYF I R+ + C I +AS P
Sbjct: 305 GLDGYFKIARNAN---NHCGIAGVASVP 329
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 133/218 (61%), Gaps = 9/218 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VTPVK+Q CGSCW+FST IEGIN ++TG LISLSEQEL+DC+ S+
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDS-A 249
GCDGGY + ++V++N G+ TE +YPY G C ++ V I GYK V +D +
Sbjct: 62 GCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEIS 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
L+ A QP+SV FQ Y GIY G C + DHAV VGY G+ Y ++
Sbjct: 121 LIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTN---TDHAVTAVGY----GKTYLLL 173
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
KNSWG +WG GY I R + G C + + +PIK
Sbjct: 174 KNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK 211
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 176/318 (55%), Gaps = 27/318 (8%)
Query: 40 ELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNN-PGGHVV---GLNKFADMSN 95
E + ++K H K+Y E RR FK+N+ + E G V +N+F DMS
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 96 EEFRE-IYLKKIQKPIGKAIGNAKSNLHKTVQSCEAP--SSLDWRKRGIVTPVKDQGSCG 152
EEF + K QKP NL S + P +S+DWR V+ VKDQG CG
Sbjct: 85 EEFLAYVNRGKAQKP------KHPENLRMPYVSSKKPLAASVDWRSNA-VSEVKDQGQCG 137
Query: 153 SCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT--SYGCDGGYMDYAFEWVINNGGI 210
S WSFSTTGA+EG AL G L SLSEQ L+DC ++ + GCDGG+MD AF + I++ GI
Sbjct: 138 SSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY-IHDYGI 196
Query: 211 DTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASD- 269
+ES YPY C ++ V ++ GY D+ D L AV Q V + A+D
Sbjct: 197 MSESAYPYEAQGDYCRFDSSQS-VTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDE 255
Query: 270 FQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRD 328
Q Y+ G+ Y+ C+ ++H VL+VGYGS+NG+DYWI+KNSWG+ WG GY+ R+
Sbjct: 256 LQFYSGGLFYDQTCNQSD--LNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRN 313
Query: 329 TSLEYG-KCAINAMASYP 345
YG C I ASYP
Sbjct: 314 ----YGNNCGIATAASYP 327
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 194 bits (493), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 170/315 (53%), Gaps = 20/315 (6%)
Query: 40 ELFQRWKDKHGKAYKHTEEAERRF---RNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNE 96
+L+ +WK + K Y ++ RR +N K+ E+ + + +GLN+F DM+ E
Sbjct: 3 DLWHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFE 62
Query: 97 EFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWS 156
EF+ YL ++ + A + + P +DWR+ G VT VKDQG+CGS W+
Sbjct: 63 EFKAKYLTEMSR----ASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWA 118
Query: 157 FSTTGAIEGINALVTGDLISLSEQELVDCDTT--SYGCDGGYMDYAFEWVINNGGIDTES 214
FSTTG +EG IS SEQ+LVDC + GC GG M+ A+++ + G++TES
Sbjct: 119 FSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQFGLETES 177
Query: 215 DYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALL--CAAVQQPISVGMVGSASDFQL 272
YPYT V+G C K+ V + G+ V L + P +V V SDF +
Sbjct: 178 SYPYTAVEGQCRYNKQ-LGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVA-VDVESDFMM 235
Query: 273 YTSGIYNGD-CSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSL 331
Y SGIY CS P ++HAVL VGYG++ G DYWIVKNSWG SWG GY + R+
Sbjct: 236 YRSGIYQSQTCS--PLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRG- 292
Query: 332 EYGKCAINAMASYPI 346
C I ++AS P+
Sbjct: 293 --NMCGIASLASLPM 305
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 132/224 (58%), Gaps = 15/224 (6%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-- 188
P S+DWRK+G VTPVK+Q CGSCW+FS TGA+EG TG L+SLSEQ LVDC
Sbjct: 2 PKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQG 61
Query: 189 SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDS 248
+ GC+GG+M AF++V NGG+D+E YPY VD C + E V G+ V P
Sbjct: 62 NQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKY-RPENSVAQDTGFTVVAPGKE 120
Query: 249 ALLCAAVQQ--PISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSE---- 301
L AV PISV M S FQ Y SGIY DCS+ +DH VL+VGYG E
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSK--NLDHGVLVVGYGFEGANS 178
Query: 302 NGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+ YW+VKNSWG WG +GY I +D + C I ASYP
Sbjct: 179 DNSKYWLVKNSWGPEWGSNGYVKIAKDKN---NHCGIATAASYP 219
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 24/315 (7%)
Query: 42 FQRWKDKHGKAYKH-TEEAERRF---RNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEE 97
+ WK +GK YK EEA RR +N K + + +E + +G+N DM++EE
Sbjct: 12 WHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEE 71
Query: 98 FREIYLKKIQKPIG-KAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWS 156
+ + ++ P + KSN ++ + P S+DWR++G VT VK QGSCG+ W+
Sbjct: 72 VMSL-MSSLRVPSQWQRNITYKSNPNRIL-----PDSVDWREKGCVTEVKYQGSCGAAWA 125
Query: 157 FSTTGAIEGINALVTGDLISLSEQELVDCDTTSY---GCDGGYMDYAFEWVINNGGIDTE 213
FS GA+E L TG L+SLS Q LVDC T Y GC+GG+M AF+++I+N GID++
Sbjct: 126 FSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSD 185
Query: 214 SDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAV--QQPISVGMVGSASDFQ 271
+ YPY +D C + + + Y ++ +L AV + P+SVG+ F
Sbjct: 186 ASYPYKAMDQKCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFF 244
Query: 272 LYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTS 330
LY SG+ Y C+ + ++H VL+VGYG NG++YW+VKNSWG ++G +GY + R+
Sbjct: 245 LYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 301
Query: 331 LEYGKCAINAMASYP 345
C I + SYP
Sbjct: 302 ---NHCGIASFPSYP 313
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 140/219 (63%), Gaps = 9/219 (4%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP S+D+RK+G VTPVK+QG CGSCW+FS+ GA+EG TG L++L+ Q LVDC + +
Sbjct: 1 APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEN 60
Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249
GC GGYM AF++V N GID+E YPY G D +C + K GY+++ + A
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEA 119
Query: 250 LLCAAVQQ--PISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGEDY 306
L AV P+SV + S + FQ Y++G+ Y+ +CS+D ++HAVL VGYG + G +
Sbjct: 120 ALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDA--LNHAVLAVGYGIQAGNKH 177
Query: 307 WIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
WI+KNSWG SWG GY + R+ + C I +AS+P
Sbjct: 178 WIIKNSWGESWGNAGYILMARNKN---NACGIANLASFP 213
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 140/225 (62%), Gaps = 14/225 (6%)
Query: 129 EAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD-- 186
EAP S+DWR++G VTPVK+QG CGSCW+FS TGA+EG TG LISLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 187 TTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPS 246
+ GC+GG MDYAF++V +NGG+D+E YPY + +C + + V + G+ D+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ 119
Query: 247 DSALLCA-AVQQPISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSENGE 304
+ AL+ A A PISV + F Y GIY DCS++ +DH VL+VGYG E+ E
Sbjct: 120 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED--MDHGVLVVGYGFESTE 177
Query: 305 D----YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
YW+VKNSWG WG+ GY + +D C I + ASYP
Sbjct: 178 SDNNKYWLVKNSWGEEWGMGGYVKMAKDRR---NHCGIASAASYP 219
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 191 bits (486), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 129/218 (59%), Gaps = 5/218 (2%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P ++DWRK+G VTPV+ QGSCGSCW+FS +EGIN + TG L+ LSEQELVDC+ S+
Sbjct: 2 PENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSH 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA- 249
GC GGY YA E+V N GI S YPY GTC + +V G V+P++
Sbjct: 62 GCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGN 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
LL A +QP+SV + FQLY GI+ G C +DHAV VGYG G+ Y ++
Sbjct: 121 LLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTK---VDHAVTAVGYGKSGGKGYILI 177
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
KNSWGT+WG GY I R G C + + YP K
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 130/219 (59%), Gaps = 9/219 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P +DWR++G VTPVK+QGSCGSCW+FS IEGI + TG+L SEQEL+DCD SY
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSA 249
GC+GGY A + V GI + YPY GV C ++ DG + V+P + A
Sbjct: 62 GCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGA 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
LL + QP+SV + + DFQLY GI+ G C N +DHAV VGY G +Y ++
Sbjct: 121 LLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGY----GPNYILI 173
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKE 348
KNSWGT WG +GY I R T YG C + + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 138/218 (63%), Gaps = 9/218 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+D+RK+G VTPVK+QG CGSCW+FS+ GA+EG TG L++LS Q LVDC + +
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSAL 250
GC GGYM AF++V N GID+E YPY G D +C + K GY+++ +
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEKA 120
Query: 251 LCAAVQQ--PISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGEDYW 307
L AV + P+SV + S + FQ Y+ G+ Y+ +CS+D ++HAVL VGYG + G +W
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDN--LNHAVLAVGYGIQKGNKHW 178
Query: 308 IVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
I+KNSWG SWG GY + R+ + C I +AS+P
Sbjct: 179 IIKNSWGESWGNKGYILMARNKN---NACGIANLASFP 213
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 129/218 (59%), Gaps = 5/218 (2%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P ++DWRK+G VTPV+ QGSCGSCW+FS +EGIN + TG L+ LSEQELVDC+ S+
Sbjct: 2 PENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSH 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA- 249
GC GGY YA E+V N GI S YPY GTC + +V G V+P++
Sbjct: 62 GCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGN 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
LL A +QP+SV + FQLY GI+ G C ++HAV VGYG G+ Y ++
Sbjct: 121 LLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTK---VEHAVTAVGYGKSGGKGYILI 177
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
KNSWGT+WG GY I R G C + + YP K
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 139/224 (62%), Gaps = 14/224 (6%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD--T 187
AP S+DWR++G VTPVK+QG CGSCW+FS TGA+EG TG LISLSEQ LVDC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 188 TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
+ GC+GG MDYAF++V +NGG+D+E YPY + +C + + V + G+ D+ +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQE 119
Query: 248 SALLCA-AVQQPISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSENGED 305
AL+ A A PISV + F Y GIY DCS++ +DH VL+VGYG E+ E
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED--MDHGVLVVGYGFESTES 177
Query: 306 ----YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
YW+VKNSWG WG+ GY + +D C I + ASYP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRR---NHCGIASAASYP 218
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 130/219 (59%), Gaps = 9/219 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P +DWR++G VTPVK+QGSCGSCW+FS IEGI + TG+L SEQEL+DCD SY
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSA 249
GC+GGY A + V GI + YPY GV C ++ DG + V+P + A
Sbjct: 62 GCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGA 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
LL + QP+SV + + DFQLY GI+ G C N +DHAV VGY G +Y ++
Sbjct: 121 LLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGY----GPNYILI 173
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKE 348
KNSWGT WG +GY I R T YG C + + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 131/224 (58%), Gaps = 15/224 (6%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-- 188
P S+DWRK+G VTPVK+Q CGS W+FS TGA+EG TG L+SLSEQ LVDC
Sbjct: 2 PKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQG 61
Query: 189 SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDS 248
+ GC+GG+M AF++V NGG+D+E YPY VD C + E V G+ V P
Sbjct: 62 NQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKY-RPENSVAQDTGFTVVAPGKE 120
Query: 249 ALLCAAVQQ--PISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSE---- 301
L AV PISV M S FQ Y SGIY DCS+ +DH VL+VGYG E
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSK--NLDHGVLVVGYGFEGANS 178
Query: 302 NGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+ YW+VKNSWG WG +GY I +D + C I ASYP
Sbjct: 179 DNSKYWLVKNSWGPEWGSNGYVKIAKDKN---NHCGIATAASYP 219
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 131/218 (60%), Gaps = 9/218 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P +DWR++G VTPVK+QGSCGSCW+FS IEGI + TG+L SEQEL+DCD SY
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSY 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSA 249
GC+GGY A + V GI + YPY GV C ++ DG + V+P ++ A
Sbjct: 62 GCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGA 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
LL + QP+SV + + DFQLY GI+ G C N +DHAV VGYG +Y ++
Sbjct: 121 LLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGYGP----NYILI 173
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
KNSWGT WG +GY I R T YG C + + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 139/224 (62%), Gaps = 14/224 (6%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD--T 187
AP S+DWR++G VTPVK+QG CGSCW+FS TGA+EG TG LISLSEQ LVDC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 188 TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
+ GC+GG MDYAF++V +NGG+D+E YPY + +C + + V + G+ D+ +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQE 119
Query: 248 SALLCA-AVQQPISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSENGED 305
AL+ A A PISV + F Y GIY DCS++ +DH VL+VGYG E+ E
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED--MDHGVLVVGYGFESTES 177
Query: 306 ----YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
YW+VKNSWG WG+ GY + +D C I + ASYP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRR---NHCGIASAASYP 218
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 139/225 (61%), Gaps = 14/225 (6%)
Query: 129 EAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD-- 186
EAP S+DWR++G VTPVK+QG CGS W+FS TGA+EG TG LISLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 187 TTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPS 246
+ GC+GG MDYAF++V +NGG+D+E YPY + +C + + V + G+ D+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ 119
Query: 247 DSALLCA-AVQQPISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSENGE 304
+ AL+ A A PISV + F Y GIY DCS++ +DH VL+VGYG E+ E
Sbjct: 120 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED--MDHGVLVVGYGFESTE 177
Query: 305 D----YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
YW+VKNSWG WG+ GY + +D C I + ASYP
Sbjct: 178 SDNNKYWLVKNSWGEEWGMGGYVKMAKDRR---NHCGIASAASYP 219
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 187 bits (476), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 138/224 (61%), Gaps = 14/224 (6%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD--T 187
AP S+DWR++G VTPVK+QG CGS W+FS TGA+EG TG LISLSEQ LVDC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 188 TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
+ GC+GG MDYAF++V +NGG+D+E YPY + +C + + V + G+ D+ +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQE 119
Query: 248 SALLCA-AVQQPISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSENGED 305
AL+ A A PISV + F Y GIY DCS++ +DH VL+VGYG E+ E
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED--MDHGVLVVGYGFESTES 177
Query: 306 ----YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
YW+VKNSWG WG+ GY + +D C I + ASYP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRR---NHCGIASAASYP 218
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 187 bits (476), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 138/220 (62%), Gaps = 9/220 (4%)
Query: 129 EAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT 188
AP S+D+RK+G VTPVK+QG CGSCW+FS+ GA+EG TG L++LS Q LVDC +
Sbjct: 2 RAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE 61
Query: 189 SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDS 248
+ GC GGYM AF++V N GID+E YPY G + +C + K GY+++ +
Sbjct: 62 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNE 120
Query: 249 ALLCAAVQQ--PISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGED 305
L AV + P+SV + S + FQ Y+ G+ Y+ C++D ++HAVL VGYG + G
Sbjct: 121 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDN--LNHAVLAVGYGIQKGNK 178
Query: 306 YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+WI+KNSWG +WG GY + R+ + C I +AS+P
Sbjct: 179 HWIIKNSWGENWGNKGYILMARNKN---NACGIANLASFP 215
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 136/222 (61%), Gaps = 12/222 (5%)
Query: 131 PSSLDWRKRG-IVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDC--DT 187
P S+DWRK+G V+PVK+QGSCGSCW+FSTTGA+E A+ TG ++SL+EQ+LVDC +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 188 TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
++GC GG AFE++ N GI E YPY G D C ++ + + ++ +D
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKA-IAFVKDVANITMND 120
Query: 248 SALLCAAVQ--QPISVGMVGSASDFQLYTSGIYNG-DCSNDPYYIDHAVLIVGYGSENGE 304
+ AV P+S +DF +Y GIY+ C P ++HAVL VGYG ENG
Sbjct: 121 EEAMVEAVALYNPVSFAF-EVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGI 179
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346
YWIVKNSWG WG++GYF I R ++ C + A ASYPI
Sbjct: 180 PYWIVKNSWGPQWGMNGYFLIERGKNM----CGLAACASYPI 217
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 138/219 (63%), Gaps = 9/219 (4%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP S+D+RK+G VTPVK+QG CGSCW+FS+ GA+EG TG L++LS Q LVDC + +
Sbjct: 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249
GC GGYM AF++V N GID+E YPY G + +C + K GY+++ +
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 119
Query: 250 LLCAAVQQ--PISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGEDY 306
L AV + P+SV + S + FQ Y+ G+ Y+ C++D ++HAVL VGYG + G +
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDN--LNHAVLAVGYGIQKGNKH 177
Query: 307 WIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
WI+KNSWG +WG GY + R+ + C I +AS+P
Sbjct: 178 WIIKNSWGENWGNKGYILMARNKN---NACGIANLASFP 213
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 130/218 (59%), Gaps = 9/218 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P +DWR++G VTPVK+QGSCGS W+FS IEGI + TG+L SEQEL+DCD SY
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSA 249
GC+GGY A + V GI + YPY GV C ++ DG + V+P ++ A
Sbjct: 62 GCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGA 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
LL + QP+SV + + DFQLY GI+ G C N +DHAV VGY G +Y ++
Sbjct: 121 LLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGY----GPNYILI 173
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
KNSWGT WG +GY I R T YG C + + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 129/218 (59%), Gaps = 9/218 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P +DWR++G VTPVK+QGSCGS W+FS IEGI + TG+L SEQEL+DCD SY
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSA 249
GC+GGY A + V GI + YPY GV C ++ DG + V+P + A
Sbjct: 62 GCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGA 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
LL + QP+SV + + DFQLY GI+ G C N +DHAV VGY G +Y ++
Sbjct: 121 LLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGY----GPNYILI 173
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
KNSWGT WG +GY I R T YG C + + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 130/218 (59%), Gaps = 9/218 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P +DWR++G VTPVK+QGSCGS W+FS IEGI + TG+L SEQEL+DCD SY
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSY 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSA 249
GC+GGY A + V GI + YPY GV C ++ DG + V+P ++ A
Sbjct: 62 GCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGA 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
LL + QP+SV + + DFQLY GI+ G C N +DHAV VGYG +Y ++
Sbjct: 121 LLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGYGP----NYILI 173
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
KNSWGT WG +GY I R T YG C + + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 138/224 (61%), Gaps = 14/224 (6%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD--T 187
AP S+DWR++G VTPVK+QG CGS W+FS TGA+EG TG LISLSEQ LVDC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 188 TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
+ GC+GG MDYAF++V +NGG+D+E YPY + +C + + V + G+ D+ +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQE 119
Query: 248 SALLCA-AVQQPISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSENGED 305
AL+ A A PISV + F Y GIY DCS++ +DH VL+VGYG E+ E
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED--MDHGVLVVGYGFESTES 177
Query: 306 ----YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
YW+VKNSWG WG+ GY + +D C I + ASYP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRR---NHCGIASAASYP 218
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 138/219 (63%), Gaps = 9/219 (4%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP S+D+R++G VTPVK+QG CGSCW+FS+ GA+EG TG L++LS Q LVDC + +
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249
GC GGYM AF++V N GID+E YPY G + +C + K GY+++ +
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 119
Query: 250 LLCAAVQQ--PISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGEDY 306
L AV + P+SV + S + FQ Y+ G+ Y+ C++D ++HAVL VGYG G +
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDN--LNHAVLAVGYGESKGNKH 177
Query: 307 WIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
WI+KNSWG +WG+ GY + R+ + C I +AS+P
Sbjct: 178 WIIKNSWGENWGMGGYIKMARNKN---NACGIANLASFP 213
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 138/224 (61%), Gaps = 14/224 (6%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD--T 187
AP S+DWR++G VTPVK+QG CGS W+FS TGA+EG TG LISLSEQ LVDC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 188 TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
+ GC+GG MDYAF++V +NGG+D+E YPY + +C + + V + G+ D+ +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQE 119
Query: 248 SALLCA-AVQQPISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSENGED 305
AL+ A A PISV + F Y GIY DCS++ +DH VL+VGYG E+ E
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED--MDHGVLVVGYGFESTES 177
Query: 306 ----YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
YW+VKNSWG WG+ GY + +D C I + ASYP
Sbjct: 178 DDNKYWLVKNSWGEEWGMGGYVKMAKDRR---NHCGIASAASYP 218
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 137/218 (62%), Gaps = 9/218 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+D+RK+G VTPVK+QG CGSCW+FS+ GA+EG TG L++LS Q LVDC + +
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSAL 250
GC GGYM AF++V N GID+E YPY G + +C + K GY+++ +
Sbjct: 61 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKA 119
Query: 251 LCAAVQQ--PISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGEDYW 307
L AV + P+SV + S + FQ Y+ G+ Y+ C++D ++HAVL VGYG + G +W
Sbjct: 120 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDN--LNHAVLAVGYGIQKGNKHW 177
Query: 308 IVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
I+KNSWG +WG GY + R+ + C I +AS+P
Sbjct: 178 IIKNSWGENWGNKGYILMARNKN---NACGIANLASFP 212
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 136/216 (62%), Gaps = 9/216 (4%)
Query: 133 SLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGC 192
S+D+RK+G VTPVK+QG CGSCW+FS+ GA+EG TG L++LS Q LVDC + + GC
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 61
Query: 193 DGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLC 252
GGYM AF++V N GID+E YPY G + +C + K GY+++ + L
Sbjct: 62 GGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALK 120
Query: 253 AAVQQ--PISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
AV + P+SV + S + FQ Y+ G+ Y+ C++D ++HAVL VGYG + G +WI+
Sbjct: 121 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDN--LNHAVLAVGYGIQKGNKHWII 178
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
KNSWG +WG GY + R+ + C I +AS+P
Sbjct: 179 KNSWGENWGNKGYILMARNKN---NACGIANLASFP 211
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 133/220 (60%), Gaps = 9/220 (4%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD--T 187
AP S+DWR++G VTPVK+QG CG+ ++FS TGA+EG TG LISLSEQ LVDC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 188 TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
+ GC+GG MDYAF++V +NGG+D+E YPY + +C + + V + G+ D+ +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDVGFVDIPKQE 119
Query: 248 SALLCA-AVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYG-SENGED 305
AL+ A A PISV + F Y GIY ++HA+L+VGYG N +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYF-SSDCSSSSLNHAMLVVGYGFISNNQK 178
Query: 306 YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
YW+VKNSWG WG+ GY + +D C I + ASYP
Sbjct: 179 YWLVKNSWGEEWGMGGYVKMAKDRR---NHCGIASAASYP 215
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 135/221 (61%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+CW+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 2 PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 61
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 62 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSKYRAATCSKYTELPYGR 120
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 177
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G +GY + R+ C I + SYP
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKG---NHCGIASFPSYP 215
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 135/221 (61%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+CW+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 2 PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 61
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 62 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSKYRAATCSKYTELPYGR 120
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 177
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G +GY + R+ C I + SYP
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKG---NHCGIASFPSYP 215
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 135/221 (61%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+CW+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 5 PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 64
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 65 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSKYRAATCSKYTELPYGR 123
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 124 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 180
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G +GY + R+ C I + SYP
Sbjct: 181 EYWLVKNSWGHNFGEEGYIRMARNKG---NHCGIASFPSYP 218
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 135/221 (61%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+CW+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 3 PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 62
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 63 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSKYRAATCSKYTELPYGR 121
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 178
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G +GY + R+ C I + SYP
Sbjct: 179 EYWLVKNSWGHNFGEEGYIRMARNKG---NHCGIASFPSYP 216
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 135/221 (61%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+CW+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 3 PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 62
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 63 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSKYRAATCSKYTELPYGR 121
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 178
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G +GY + R+ C I + SYP
Sbjct: 179 EYWLVKNSWGHNFGEEGYIRMARNKG---NHCGIASFPSYP 216
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 134/221 (60%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+CW+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 2 PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 61
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 62 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSKYRAATCRKYTELPYGR 120
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 177
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G GY + R+ C I + SYP
Sbjct: 178 EYWLVKNSWGHNFGEKGYIRMARNKG---NHCGIASFPSYP 215
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 127/218 (58%), Gaps = 5/218 (2%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR +G VTPVK QG C SCW+FST +EGIN + TG+L+ LSEQELVDCD SY
Sbjct: 2 PESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQSY 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSA 249
GC+ GY + ++V N GI + YPY TC + V +G V+ ++ +
Sbjct: 62 GCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEGS 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
LL A QP+SV + + DFQ Y GI+ G C +DHAV VGYG G+ Y ++
Sbjct: 121 LLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTK---VDHAVTAVGYGKSGGKGYILI 177
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
KNSWG WG +GY I R + G C + + YPIK
Sbjct: 178 KNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPIK 215
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 135/221 (61%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+CW+FS GA+E L TG L++LS Q LVDC T Y
Sbjct: 2 PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKY 61
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 62 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSKYRAATCSKYTELPYGR 120
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 177
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G +GY + R+ C I + SYP
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKG---NHCGIASFPSYP 215
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 133/221 (60%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+CW+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 2 PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKY 61
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + Y ++
Sbjct: 62 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSAYRAATCRKYTELPYGR 120
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 177
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G GY + R+ C I + SYP
Sbjct: 178 EYWLVKNSWGHNFGEKGYIRMARNKG---NHCGIASFPSYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 134/221 (60%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+ W+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 4 PDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 63
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 64 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSKYRAATCSKYTELPYGR 122
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 123 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 179
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G +GY + R+ C I + SYP
Sbjct: 180 EYWLVKNSWGHNFGEEGYIRMARNKG---NHCGIASFPSYP 217
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 134/221 (60%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+ W+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 3 PDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 62
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 63 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSKYRAATCSKYTELPYGR 121
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 178
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G +GY + R+ C I + SYP
Sbjct: 179 EYWLVKNSWGHNFGEEGYIRMARNKG---NHCGIASFPSYP 216
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 134/221 (60%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+ W+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 2 PDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 61
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 62 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY-DSKYRAATCSKYTELPYGR 120
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 177
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G +GY + R+ C I + SYP
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKG---NHCGIASFPSYP 215
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 134/221 (60%), Gaps = 13/221 (5%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P S+DWR++G VT VK QGSCG+ W+FS GA+E L TG L+SLS Q LVDC T Y
Sbjct: 2 PDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 61
Query: 191 ---GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
GC+GG+M AF+++I+N GID+++ YPY +D C + + + Y ++
Sbjct: 62 GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQY-DSKYRAATCSKYTELPYGR 120
Query: 248 SALLCAAV--QQPISVGMVGSASDFQLYTSGI-YNGDCSNDPYYIDHAVLIVGYGSENGE 304
+L AV + P+SVG+ F LY SG+ Y C+ + ++H VL+VGYG NG+
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGK 177
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
+YW+VKNSWG ++G +GY + R+ C I + SYP
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKG---NHCGIASFPSYP 215
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 171 bits (434), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 133/218 (61%), Gaps = 9/218 (4%)
Query: 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSY 190
P+S+DWR++G VTPV++QG CGSCW+FS+ A+EGIN +VTG L+SLSEQEL+DC+ SY
Sbjct: 2 PTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRSY 61
Query: 191 GCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDV-EPSDSA 249
GC GG+ YA ++V N+ GI YPY GV C ++ + V DG V ++ A
Sbjct: 62 GCRGGFPLYALQYVANS-GIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQA 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIV 309
L+ QP+S+ + FQ Y GI+ G C IDHAV VGYG+ DY ++
Sbjct: 121 LIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTS---IDHAVAAVGYGN----DYILI 173
Query: 310 KNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 347
KNSWGT WG GY I R + G C + + + +P K
Sbjct: 174 KNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK 211
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 14/222 (6%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP+++DWR++G VTPVKDQG CGSCW+FST G IEG + L+SLSEQ LV CDT
Sbjct: 1 APAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTID 60
Query: 190 YGCDGGYMDYAFEWVIN-NGG-IDTESDYPYTGVDG---TCNITKEETKVVSIDGYKDVE 244
+GC GG MD AF W++N NGG + TE+ YPY +G C + E D + D+
Sbjct: 61 FGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITD-HVDL- 118
Query: 245 PSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGE 304
P D + A + + + + A+ F Y GI C+++ +DH VL+VGY +
Sbjct: 119 PQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILT-SCTSE--QLDHGVLLVGYNDASNP 175
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346
YWI+KNSW WG DGY I + T+ +C +N S +
Sbjct: 176 PYWIIKNSWSNMWGEDGYIRIEKGTN----QCLMNQAVSSAV 213
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 125/224 (55%), Gaps = 18/224 (8%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP+++DWR RG VT VKDQG CGSCW+FS G +E L L +LSEQ LV CD T
Sbjct: 1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTD 60
Query: 190 YGCDGGYMDYAFEWVI--NNGGIDTESDYPYT---GVDGTCNITKEETKVVSIDGYKDVE 244
GC GG M+ AFEW++ NNG + TE YPY G+ C T T +I G+ ++
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCT-TSGHTVGATITGHVEL- 118
Query: 245 PSDSALLCA--AVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSEN 302
P D A + A AV P++V + AS + YT G+ S +DH VL+VGY
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAV--DASSWMTYTGGVMTSCVSEQ---LDHGVLLVGYNDSA 173
Query: 303 GEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346
YWI+KNSW T WG +GY I + ++ +C + AS +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAKGSN----QCLVKEEASSAV 213
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 127/224 (56%), Gaps = 18/224 (8%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP+++DWR RG VT VKDQG CGSCW+FS G +E L L +LSEQ LV CD T
Sbjct: 1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTD 60
Query: 190 YGCDGGYMDYAFEWVI--NNGGIDTESDYPYT---GVDGTCNITKEETKVVSIDGYKDVE 244
GC GG M+ AFEW++ NNG + TE YPY G+ C T T +I G+ ++
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCT-TSGHTVGATITGHVEL- 118
Query: 245 PSDSALLCA--AVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSEN 302
P D A + A AV P++V + AS + YT G+ C ++ +DH VL+VGY
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAV--DASSWMTYTGGVMT-SCVSEA--LDHGVLLVGYNDSA 173
Query: 303 GEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346
YWI+KNSW T WG +GY I + ++ +C + AS +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAKGSN----QCLVKEEASSAV 213
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 114/177 (64%), Gaps = 7/177 (3%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD--T 187
AP S+DWR++G VTPVK+QG CGSCW+FS TGA+EG TG LISLSEQ LVDC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 188 TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
+ GC+GG MDYAF++V +NGG+D+E YPY + +C + + V + G+ D+ +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQE 119
Query: 248 SALLCA-AVQQPISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSEN 302
AL+ A A PISV + F Y GIY DCS++ +DH VL+VGYG E+
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED--MDHGVLVVGYGFES 174
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 125/224 (55%), Gaps = 18/224 (8%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP+++DWR RG VT VKDQG CGSCW+FS G +E L L +L+EQ LV CD T
Sbjct: 1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTD 60
Query: 190 YGCDGGYMDYAFEWVI--NNGGIDTESDYPYT---GVDGTCNITKEETKVVSIDGYKDVE 244
GC GG M+ AFEW++ NNG + TE YPY G+ C T T +I G+ ++
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCT-TSGHTVGATITGHVEL- 118
Query: 245 PSDSALLCA--AVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSEN 302
P D A + A AV P++V + AS + YT G+ S +DH VL+VGY
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAV--DASSWMTYTGGVMTSCVSEQ---LDHGVLLVGYNDGA 173
Query: 303 GEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346
YWI+KNSW T WG +GY I + ++ +C + AS +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAKGSN----QCLVKEEASSAV 213
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 125/224 (55%), Gaps = 18/224 (8%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP+++DWR RG VT VKDQG CGSCW+FS G +E L L +L+EQ LV CD T
Sbjct: 1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTD 60
Query: 190 YGCDGGYMDYAFEWVI--NNGGIDTESDYPYT---GVDGTCNITKEETKVVSIDGYKDVE 244
GC GG M+ AFEW++ NNG + TE YPY G+ C T T +I G+ ++
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCT-TSGHTVGATITGHVEL- 118
Query: 245 PSDSALLCA--AVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSEN 302
P D A + A AV P++V + AS + YT G+ S +DH VL+VGY
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAV--DASSWMTYTGGVMTSCVSEQ---LDHGVLLVGYNDGA 173
Query: 303 GEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346
YWI+KNSW T WG +GY I + ++ +C + AS +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAKGSN----QCLVKEEASSAV 213
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 124/220 (56%), Gaps = 11/220 (5%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP DWR +G VT VKDQG CGSCW+FS TG +EG L G L+SLSEQEL+DCD
Sbjct: 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMD 60
Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249
C GG A+ + N GG++TE DY Y G +C + E+ KV D + +
Sbjct: 61 KACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNEQKL 120
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTSGI---YNGDCSNDPYYIDHAVLIVGYGSENGEDY 306
A + PISV + +A Q Y GI CS P+ IDHAVL+VGYG + +
Sbjct: 121 AAWLAKRGPISVAI--NAFGMQFYRHGISRPLRPLCS--PWLIDHAVLLVGYGQRSDVPF 176
Query: 307 WIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346
W +KNSWGT WG GY+Y+ R + G C +N MAS +
Sbjct: 177 WAIKNSWGTDWGEKGYYYLHRGS----GACGVNTMASSAV 212
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 129/228 (56%), Gaps = 17/228 (7%)
Query: 132 SSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYG 191
++ DWR VTPVKDQ +CGSCW+FS+ G++E A+ LI+LSEQELVDC +YG
Sbjct: 20 AAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYG 79
Query: 192 CDGGYMDYAFEWVINNGGIDTESDYPY-TGVDGTCNITKEETKVVSIDGYKDVEPSDSAL 250
C+GG ++ AFE +I GGI + DYPY + CNI + T+ I Y V P +
Sbjct: 80 CNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDR-CTEKYGIKNYLSV-PDNKLK 137
Query: 251 LCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYG--------SEN 302
PIS+ V + DF Y GI++G+C + ++HAV++VG+G ++
Sbjct: 138 EALRFLGPISIS-VAVSDDFAFYKEGIFDGECGDQ---LNHAVMLVGFGMKEIVNPLTKK 193
Query: 303 GED--YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKE 348
GE Y+I+KNSWG WG G+ I D S KC + A P+ E
Sbjct: 194 GEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 113/177 (63%), Gaps = 7/177 (3%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCD--T 187
AP S+DWR++G VTPVK+QG CGS W+FS TGA+EG TG LISLSEQ LVDC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 188 TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD 247
+ GC+GG MDYAF++V +NGG+D+E YPY + +C + + V + G+ D+ +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQE 119
Query: 248 SALLCA-AVQQPISVGMVGSASDFQLYTSGIY-NGDCSNDPYYIDHAVLIVGYGSEN 302
AL+ A A PISV + F Y GIY DCS++ +DH VL+VGYG E+
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED--MDHGVLVVGYGFES 174
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 128/228 (56%), Gaps = 17/228 (7%)
Query: 132 SSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYG 191
++ DWR VTPVKDQ +CGS W+FS+ G++E A+ LI+LSEQELVDC +YG
Sbjct: 19 AAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYG 78
Query: 192 CDGGYMDYAFEWVINNGGIDTESDYPY-TGVDGTCNITKEETKVVSIDGYKDVEPSDSAL 250
C+GG ++ AFE +I GGI + DYPY + CNI + T+ I Y V P +
Sbjct: 79 CNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDR-CTEKYGIKNYLSV-PDNKLK 136
Query: 251 LCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYG--------SEN 302
PIS+ V + DF Y GI++G+C + ++HAV++VG+G ++
Sbjct: 137 EALRFLGPISIS-VAVSDDFAFYKEGIFDGECGDQ---LNHAVMLVGFGMKEIVNPLTKK 192
Query: 303 GED--YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKE 348
GE Y+I+KNSWG WG G+ I D S KC + A P+ E
Sbjct: 193 GEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 240
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 126/227 (55%), Gaps = 17/227 (7%)
Query: 133 SLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGC 192
+ DWR G VTPVKDQ CGSCW+FS+ G++E A+ L SEQELVDC + GC
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGC 82
Query: 193 DGGYMDYAFEWVINNGGIDTESDYPY-TGVDGTCNITKEETKVVSIDGYKDVEPSDSALL 251
GGY+ AF+ +I+ GG+ ++ DYPY + + TCN+ K + +I Y + P D
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNL-KRCNERYTIKSYVSI-PDDKFKE 140
Query: 252 CAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSEN--GED---- 305
PIS+ + S DF Y G Y+G+C P +HAV++VGYG ++ ED
Sbjct: 141 ALRYLGPISISIAAS-DDFAFYRGGFYDGECGAAP---NHAVILVGYGMKDIYNEDTGRM 196
Query: 306 ----YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKE 348
Y+I+KNSWG+ WG GY + D + C+I A P+ E
Sbjct: 197 EKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLLE 243
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 147/301 (48%), Gaps = 29/301 (9%)
Query: 42 FQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREI 101
F+ +K K+Y E+ E +NF +++YV ++N G +N +D+S +EF+
Sbjct: 8 FEEYKKAFNKSYATFEDEEAARKNFLESVKYV---QSNGGA----INHLSDLSLDEFKNR 60
Query: 102 YLKKIQKPIGKAIGNAKS--NLHKTVQSC----EAPSSLDWRKRGIVTPVKDQGSCGSCW 155
+L +A + K+ +L+ +C AP+ +D R+ VTP++ QG CGS W
Sbjct: 61 FLMS-----AEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAW 115
Query: 156 SFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESD 215
+FS A E + L+EQELVDC + +GC G + E++ +NG + ES
Sbjct: 116 AFSGVAATESAYLAYRDQSLDLAEQELVDC-ASQHGCHGDTIPRGIEYIQHNGVVQ-ESY 173
Query: 216 YPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPIS-VGMVGSASDFQLYT 274
Y Y + +C + + I Y + P ++ + A+ Q S + ++ D +
Sbjct: 174 YRYVAREQSCR--RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFR 231
Query: 275 ----SGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTS 330
I D P Y HAV IVGY + G DYWIV+NSW T+WG +GY Y +
Sbjct: 232 HYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANID 289
Query: 331 L 331
L
Sbjct: 290 L 290
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 128/241 (53%), Gaps = 23/241 (9%)
Query: 126 QSCEAPSSLDWRK-RGI--VTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLIS--LSEQ 180
Q P S DWR RGI V+PV++Q SCGSC+SF++ G +E ++T + + LS Q
Sbjct: 202 QILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQ 261
Query: 181 ELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGY 240
E+V C + GCDGG+ + G+ E+ +PYT D C + + S + Y
Sbjct: 262 EVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEYY 321
Query: 241 KDVEPS---DSALLCAAVQQ--PISVGMVGSASDFQLYTSGIYNGDCSNDPY----YIDH 291
+ AL+ + + P++V DF Y SGIY+ +DP+ +H
Sbjct: 322 YVGGFYGGCNEALMKLELVKHGPMAVAF-EVHDDFLHYHSGIYHHTGLSDPFNPFELTNH 380
Query: 292 AVLIVGYGSE--NGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAIN--AMASYPIK 347
AVL+VGYG + G DYWIVKNSWG+ WG GYF I R T +CAI AMA+ PI
Sbjct: 381 AVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTD----ECAIESIAMAAIPIP 436
Query: 348 E 348
+
Sbjct: 437 K 437
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 126/236 (53%), Gaps = 23/236 (9%)
Query: 131 PSSLDWRK-RGI--VTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLIS--LSEQELVDC 185
P+S DWR GI V+PV++Q SCGSC+SF++ G +E ++T + + LS QE+V C
Sbjct: 208 PTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSC 267
Query: 186 DTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVS-----IDGY 240
+ GC+GG+ + G+ E+ +PYTG D C + ++ + S + G+
Sbjct: 268 SQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGF 327
Query: 241 KDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPY----YIDHAVLIV 296
L P++V DF Y GIY+ DP+ +HAVL+V
Sbjct: 328 YGGCNEALMKLELVHHGPMAVAF-EVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLV 386
Query: 297 GYG--SENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAIN--AMASYPIKE 348
GYG S +G DYWIVKNSWGT WG +GYF I R T +CAI A+A+ PI +
Sbjct: 387 GYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD----ECAIESIAVAATPIPK 438
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 105/212 (49%), Gaps = 11/212 (5%)
Query: 125 VQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVD 184
+ S PS LD R VTP++ QG CGSCW+FS A E + LSEQELVD
Sbjct: 6 INSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVD 65
Query: 185 CDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVE 244
C + +GC G + E++ NG ++ E YPY + C + ++ I Y +
Sbjct: 66 C-ASQHGCHGDTIPRGIEYIQQNGVVE-ERSYPYVAREQRCR--RPNSQHYGISNYCQIY 121
Query: 245 PSDSALLCAAVQQP-ISVGMVGSASDFQLYT----SGIYNGDCSNDPYYIDHAVLIVGYG 299
P D + A+ Q ++ ++ D + + I D P Y HAV IVGYG
Sbjct: 122 PPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNY--HAVNIVGYG 179
Query: 300 SENGEDYWIVKNSWGTSWGIDGYFYITRDTSL 331
S G+DYWIV+NSW T+WG GY Y +L
Sbjct: 180 STQGDDYWIVRNSWDTTWGDSGYGYFQAGNNL 211
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 11/207 (5%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP+ +D R+ VTP++ QG CGSCW+FS A E + L+EQELVDC +
Sbjct: 10 APAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDC-ASQ 68
Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249
+GC G + E++ +NG + ES Y Y + +C + + I Y + P ++
Sbjct: 69 HGCHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSCR--RPNAQRFGISNYCQIYPPNAN 125
Query: 250 LLCAAVQQPIS-VGMVGSASDFQLYT----SGIYNGDCSNDPYYIDHAVLIVGYGSENGE 304
+ A+ Q S + ++ D + I D P Y HAV IVGY + G
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGV 183
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSL 331
DYWIV+NSW T+WG +GY Y + L
Sbjct: 184 DYWIVRNSWDTNWGDNGYGYFAANIDL 210
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 11/207 (5%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP+ +D R+ VTP++ QG CGSCW+FS A E + L+EQELVDC +
Sbjct: 10 APAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC-ASQ 68
Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249
+GC G + E++ +NG + ES Y Y + +C + + I Y + P +
Sbjct: 69 HGCHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSCR--RPNAQRFGISNYCQIYPPNVN 125
Query: 250 LLCAAVQQPIS-VGMVGSASDFQLYT----SGIYNGDCSNDPYYIDHAVLIVGYGSENGE 304
+ A+ Q S + ++ D + I D P Y HAV IVGY + G
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGV 183
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSL 331
DYWIV+NSW T+WG +GY Y + L
Sbjct: 184 DYWIVRNSWDTNWGDNGYGYFAANIDL 210
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 11/207 (5%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
AP+ +D R+ VTP++ QG CGS W+FS A E + L+EQELVDC +
Sbjct: 10 APAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDC-ASQ 68
Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249
+GC G + E++ +NG + ES Y Y + +C + + I Y + P ++
Sbjct: 69 HGCHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSCR--RPNAQRFGISNYCQIYPPNAN 125
Query: 250 LLCAAVQQPIS-VGMVGSASDFQLYT----SGIYNGDCSNDPYYIDHAVLIVGYGSENGE 304
+ A+ Q S + ++ D + I D P Y HAV IVGY + G
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGV 183
Query: 305 DYWIVKNSWGTSWGIDGYFYITRDTSL 331
DYWIV+NSW T+WG +GY Y + L
Sbjct: 184 DYWIVRNSWDTNWGDNGYGYFAANIDL 210
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 112/275 (40%), Gaps = 44/275 (16%)
Query: 94 SNEEFREIYLKKIQKPIGKAIGNAKSNLHKT-VQSCEAPSSLD----WRKRGIVTPVKDQ 148
+ F + + +++ G +G K + + P+S D W + + ++DQ
Sbjct: 27 AGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQ 86
Query: 149 GSCGSCWSFSTTGAIEGINALVTGDLISL--SEQELVDC--DTTSYGCDGGYMDYAFEWV 204
GSCGSCW+F AI + T +S+ S ++L+ C GC+GGY A+ +
Sbjct: 87 GSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFW 146
Query: 205 INNGGID----------------------TESDYPYTGVDGTCNITK----------EET 232
G + S P TG T +K ++
Sbjct: 147 TRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQD 206
Query: 233 KVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHA 292
K + Y V S+ ++ + G SDF LY SG+Y HA
Sbjct: 207 KHYGYNSYS-VSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGE--MMGGHA 263
Query: 293 VLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
+ I+G+G ENG YW+V NSW T WG +G+F I R
Sbjct: 264 IRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 298
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 103/235 (43%), Gaps = 36/235 (15%)
Query: 122 HKTVQSCEAPSSLDWRKRGIV---TPVKDQ---GSCGSCWSFSTTGAI-EGINALVTGDL 174
H+ + + P S DWR V + ++Q CGSCW+ ++T A+ + IN G
Sbjct: 28 HEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAW 87
Query: 175 IS--LSEQELVDCDTTSYGCDGG----YMDYAFEWVINNGGIDTESDYPYTGVD------ 222
S LS Q ++DC C+GG DYA + GI E+ Y D
Sbjct: 88 PSTLLSVQNVIDCGNAG-SCEGGNDLSVWDYAHQ-----HGIPDETCNNYQAKDQECDKF 141
Query: 223 ---GTCNITKE-----ETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYT 274
GTCN KE + + Y + + + PIS G++ + YT
Sbjct: 142 NQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER-LANYT 200
Query: 275 SGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDT 329
GIY D YI+H V + G+G +G +YWIV+NSWG WG G+ I T
Sbjct: 201 GGIYAE--YQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTST 253
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 131 PSSLD----WRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISL--SEQELVD 184
P+S D W + + ++DQGSCGSCW+F AI + T +S+ S ++L+
Sbjct: 3 PASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLT 62
Query: 185 C--DTTSYGCDGGYMDYAFEWVINNGGID----------------------TESDYPYTG 220
C GC+GGY A+ + G + S P TG
Sbjct: 63 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 122
Query: 221 VDGTCNITK----------EETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDF 270
T +K ++ K + Y V S+ ++ + G SDF
Sbjct: 123 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYS-VSNSEKDIMAEIYKNGPVEGAFSVYSDF 181
Query: 271 QLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
LY SG+Y HA+ I+G+G ENG YW+V NSW T WG +G+F I R
Sbjct: 182 LLYKSGVYQH--VTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 236
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 131 PSSLD----WRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISL--SEQELVD 184
P+S D W + + ++DQGSCGSCW+F AI + T +S+ S ++L+
Sbjct: 2 PASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLT 61
Query: 185 C--DTTSYGCDGGYMDYAFEWVINNGGID----------------------TESDYPYTG 220
C GC+GGY A+ + G + S P TG
Sbjct: 62 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 121
Query: 221 VDGTCNITK----------EETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDF 270
T +K ++ K + Y V S+ ++ + G SDF
Sbjct: 122 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYS-VSNSEKDIMAEIYKNGPVEGAFSVYSDF 180
Query: 271 QLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
LY SG+Y HA+ I+G+G ENG YW+V NSW T WG +G+F I R
Sbjct: 181 LLYKSGVYQH--VTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 235
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 131 PSSLD----WRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISL--SEQELVD 184
P+S D W + + ++DQGSCGSCW+F AI + T +S+ S ++L+
Sbjct: 4 PASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLT 63
Query: 185 C--DTTSYGCDGGYMDYAFEWVINNGGID----------------------TESDYPYTG 220
C GC+GGY A+ + G + S P TG
Sbjct: 64 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 123
Query: 221 VDGTCNITK----------EETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDF 270
T +K ++ K + Y V S+ ++ + G SDF
Sbjct: 124 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYS-VSNSEKDIMAEIYKNGPVEGAFSVYSDF 182
Query: 271 QLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
LY SG+Y HA+ I+G+G ENG YW+V NSW T WG +G+F I R
Sbjct: 183 LLYKSGVYQH--VTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 237
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 112/278 (40%), Gaps = 52/278 (18%)
Query: 93 MSNEEFREI-YLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLD----WRKRGIVTPVKD 147
M N RE L + K A K + PSS D W + + D
Sbjct: 56 MQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIAD 115
Query: 148 QGSCGSCWS----------FSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYM 197
Q +CGSCW+ F T G ++ ++ + GDL++ C GC+GG
Sbjct: 116 QSACGSCWAVAAASAMSDRFCTMGGVQDVH-ISAGDLLAC-------CSDCGDGCNGGDP 167
Query: 198 DYAFEWVINNGGI-DTESDYPYTGVD-------------------GTCNITKEETKVVSI 237
D A+ + + G + D YP+ CN T ++ + +
Sbjct: 168 DRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVV 227
Query: 238 DGYKD-----VEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHA 292
+ Y+ ++ D + + P V DF Y SG+Y+ + Y HA
Sbjct: 228 N-YRSWTSYALQGEDDYMRELFFRGPFEVAF-DVYEDFIAYNSGVYHH--VSGQYLGGHA 283
Query: 293 VLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTS 330
V +VG+G+ NG YW + NSW T WG+DGYF I R +S
Sbjct: 284 VRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 321
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 112/278 (40%), Gaps = 52/278 (18%)
Query: 93 MSNEEFREI-YLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLD----WRKRGIVTPVKD 147
M N RE L + K A K + PSS D W + + D
Sbjct: 33 MQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIAD 92
Query: 148 QGSCGSCWS----------FSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYM 197
Q +CGSCW+ F T G ++ ++ + GDL++ C GC+GG
Sbjct: 93 QSACGSCWAVAAASAMSDRFCTMGGVQDVH-ISAGDLLAC-------CSDCGDGCNGGDP 144
Query: 198 DYAFEWVINNGGI-DTESDYPYTGVD-------------------GTCNITKEETKVVSI 237
D A+ + + G + D YP+ CN T ++ + +
Sbjct: 145 DRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVV 204
Query: 238 DGYKD-----VEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHA 292
+ Y+ ++ D + + P V DF Y SG+Y+ + Y HA
Sbjct: 205 N-YRSWTSYALQGEDDYMRELFFRGPFEVAF-DVYEDFIAYNSGVYHH--VSGQYLGGHA 260
Query: 293 VLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTS 330
V +VG+G+ NG YW + NSW T WG+DGYF I R +S
Sbjct: 261 VRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 298
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 101/239 (42%), Gaps = 43/239 (17%)
Query: 129 EAPSSLDWRKR----GIVTPVKDQGSCGSCWSFSTTGAIEGINALVTG--DLISLSEQEL 182
E PSS D RK+ + ++DQ CGSCW+F A+ + + +G + LS +L
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 183 VDC-DTTSYGCDGGYMDYAFEWVINNGGI---------------------DTESDYPYTG 220
+ C ++ GC+GG + A+++ + G + T+ YP G
Sbjct: 62 LSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121
Query: 221 VD----GTCNIT--KEETKVVSIDGYKDVEPSDSALLCAAVQQ------PISVGMVGSAS 268
C T K+ + D ++ + A+Q+ P+ G
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFT-VYE 180
Query: 269 DFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
DF Y SGIY HA+ I+G+G EN YW++ NSW WG +GYF I R
Sbjct: 181 DFLNYKSGIYKHITGET--LGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVR 237
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 112/278 (40%), Gaps = 52/278 (18%)
Query: 93 MSNEEFREI-YLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLD----WRKRGIVTPVKD 147
M N RE L + K A K + PSS D W + + D
Sbjct: 34 MQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIAD 93
Query: 148 QGSCGSCWS----------FSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYM 197
Q +CGSCW+ F T G ++ ++ + GDL++ C GC+GG
Sbjct: 94 QSACGSCWAVAAASAMSDRFCTMGGVQDVH-ISAGDLLAC-------CSDCGDGCNGGDP 145
Query: 198 DYAFEWVINNGGI-DTESDYPYTGVD-------------------GTCNITKEETKVVSI 237
D A+ + + G + D YP+ C+ T ++ + +
Sbjct: 146 DRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVV 205
Query: 238 DGYKD-----VEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHA 292
+ Y+ ++ D + + P V DF Y SG+Y+ + Y HA
Sbjct: 206 N-YRSWTSYALQGEDDYMRELFFRGPFEVAF-DVYEDFIAYNSGVYHH--VSGQYLGGHA 261
Query: 293 VLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTS 330
V +VG+G+ NG YW + NSW T WG+DGYF I R +S
Sbjct: 262 VRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 299
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 99/226 (43%), Gaps = 36/226 (15%)
Query: 131 PSSLDWRKRGIV---TPVKDQ---GSCGSCWSFSTTGAI-EGINALVTGDLIS--LSEQE 181
P S DWR V + ++Q CGSCW+ ++T A+ + IN G S LS Q
Sbjct: 2 PKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQN 61
Query: 182 LVDCDTTSYGCDGG----YMDYAFEWVINNGGIDTESDYPYTGVD---------GTCNIT 228
++DC C+GG DYA + GI E+ Y D GTCN
Sbjct: 62 VIDCGNAG-SCEGGNDLSVWDYAHQ-----HGIPDETCNNYQAKDQECDKFNQCGTCNEF 115
Query: 229 KE-----ETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCS 283
KE + + Y + + + PIS G++ + YT GIY
Sbjct: 116 KECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER-LANYTGGIYAE--Y 172
Query: 284 NDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDT 329
D YI+H V + G+G +G +YWIV+NSWG WG G+ I T
Sbjct: 173 QDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTST 218
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 98/236 (41%), Gaps = 41/236 (17%)
Query: 131 PSSLD----WRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISL--SEQELVD 184
P+S D W + + ++DQGSCGS W+F AI + T +S+ S ++L+
Sbjct: 8 PASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLT 67
Query: 185 C--DTTSYGCDGGYMDYAFEWVINNGGIDT---ESDY---PYT---------GVDGTCNI 227
C GC+GGY A+ + G + ES PY+ G C
Sbjct: 68 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTG 127
Query: 228 TKEETKVVSI--DGYK--------------DVEPSDSALLCAAVQQPISVGMVGSASDFQ 271
+ K I GY V S+ ++ + G SDF
Sbjct: 128 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFL 187
Query: 272 LYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
LY SG+Y HA+ I+G+G ENG YW+V NSW T WG +G+F I R
Sbjct: 188 LYKSGVYQH--VTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 241
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 96/236 (40%), Gaps = 41/236 (17%)
Query: 131 PSSLD----WRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISL--SEQELVD 184
P S D W + ++DQGSCGSCW+F A+ + T +++ S ++L+
Sbjct: 2 PESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLT 61
Query: 185 C--DTTSYGCDGGYMDYAFEWVINNGGID----------------------TESDYPYTG 220
C GC+GGY A+ + G + + P TG
Sbjct: 62 CCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTG 121
Query: 221 VDGT--CNITKEETKVVSID-----GYKDVEPSDSA--LLCAAVQQPISVGMVGSASDFQ 271
T CN E S GY SDS ++ + G SDF
Sbjct: 122 EGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFL 181
Query: 272 LYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
Y SG+Y + + HA+ I+G+G ENG YW+V NSW WG +G+F I R
Sbjct: 182 TYKSGVYKHEAGD--VMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR 235
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 96/236 (40%), Gaps = 41/236 (17%)
Query: 131 PSSLD----WRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISL--SEQELVD 184
P S D W + ++DQGSCGSCW+F A+ + T +++ S ++L+
Sbjct: 8 PESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLT 67
Query: 185 C--DTTSYGCDGGYMDYAFEWVINNGGID----------------------TESDYPYTG 220
C GC+GGY A+ + G + + P TG
Sbjct: 68 CCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTG 127
Query: 221 VDGT--CNITKEETKVVSID-----GYKDVEPSDSA--LLCAAVQQPISVGMVGSASDFQ 271
T CN E S GY SDS ++ + G SDF
Sbjct: 128 EGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFL 187
Query: 272 LYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
Y SG+Y + + HA+ I+G+G ENG YW+V NSW WG +G+F I R
Sbjct: 188 TYKSGVYKHEAGD--VMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR 241
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 112/277 (40%), Gaps = 46/277 (16%)
Query: 93 MSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTV---QSCEAPSSLD----WRKRGIVTPV 145
+ F + + ++K G +G K L + V + P S D W + +
Sbjct: 25 QAGRNFYNVDISYLKKLCGTVLGGPK--LPERVGFSEDINLPESFDAREQWSNCPTIAQI 82
Query: 146 KDQGSCGSCWSFSTTGAIEGINALVTGDLISL--SEQELVDC--DTTSYGCDGGYMDYAF 201
+DQGSCGS W+F A+ + T +++ S ++L+ C GC+GGY A+
Sbjct: 83 RDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAW 142
Query: 202 E-WV---INNGGIDTESD--YPYT------------------GVDGTCNITKEETKVVSI 237
W + +GG+ PYT G CN E S
Sbjct: 143 NFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSY 202
Query: 238 D-----GYKDVEPSDSA--LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYID 290
GY SDS ++ + G SDF Y SG+Y + +
Sbjct: 203 KEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGD--VMGG 260
Query: 291 HAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
HA+ I+G+G ENG YW+V NSW WG +G+F I R
Sbjct: 261 HAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR 297
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 131 PSSLDWRK-RGI--VTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLIS--LSEQELVDC 185
P+S DWR GI V+PV++Q SCGSC+SF++ G +E ++T + + LS QE+V C
Sbjct: 2 PTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSC 61
Query: 186 DTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKE 230
+ GC+GG+ + G+ E+ +PYTG D C + ++
Sbjct: 62 SQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKED 106
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 131 PSSLDWRKRGIVTP----VKDQGSCGSCWSFSTTGAIEG---------INALVTGDLISL 177
P S D R++ P ++DQGSCGSCW+F AI +N V+ + +
Sbjct: 2 PESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLT 61
Query: 178 SEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTE-----------------SDYPYTG 220
G + + + +++ G ++ S P TG
Sbjct: 62 CCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTG 121
Query: 221 VDGTCNITK----------EETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDF 270
T +K +E K Y V ++ ++ + G SDF
Sbjct: 122 EGDTPKCSKTCEPGYSPSYKEDKHFGCSSYS-VANNEKEIMAEIYKNGPVEGAFSVYSDF 180
Query: 271 QLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
LY SG+Y + HA+ I+G+G ENG YW+V NSW T WG +G+F I R
Sbjct: 181 LLYKSGVYQH--VSGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 235
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 12/72 (16%)
Query: 285 DPY----YIDHAVLIVGYG--SENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAI 338
DP+ +HAVL+VGYG S +G DYWIVKNSWGT WG +GYF I R T +CAI
Sbjct: 1 DPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD----ECAI 56
Query: 339 N--AMASYPIKE 348
A+A+ PI +
Sbjct: 57 ESIAVAATPIPK 68
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 131 PSSLDWRKRGIVTP----VKDQGSCGSCWSFSTTGAIEG---------INALVTGDLISL 177
P S D R++ P ++DQGSCGSCW+F AI +N V+ + +
Sbjct: 2 PESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLT 61
Query: 178 SEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTE-----------------SDYPYTG 220
G + + + +++ G ++ S P TG
Sbjct: 62 CCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTG 121
Query: 221 VDGTCNITK----------EETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDF 270
T +K +E K Y V ++ ++ + G SDF
Sbjct: 122 EGDTPKCSKTCEPGYSPSYKEDKHFGCSSYS-VANNEKEIMAEIYKNGPVEGAFSVYSDF 180
Query: 271 QLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
LY SG+Y + HA+ I+G+G ENG YW+V NSW T WG +G+F I R
Sbjct: 181 LLYKSGVYQH--VSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR 235
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 268 SDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
SDF LY SG+Y + HA+ I+G+G ENG YW+V NSW T WG +G+F I R
Sbjct: 130 SDFLLYKSGVY--QHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR 187
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 268 SDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 327
SDF LY SG+Y HA+ I+G+G ENG YW+V NSW T WG +G+F I R
Sbjct: 129 SDFLLYKSGVYQH--VTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 186
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 38/217 (17%)
Query: 145 VKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYG--CDGGYMDYAFE 202
V+DQG+C + W F++ +E I + + +S + +C + CD G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 203 WVINN-GGIDTESDYPYTGV------------------DGTCNITKEETKVVSIDGYKDV 243
+I + G + ES+YPY V +G K E + GY
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 244 EPSDSALLCAAVQQPISVGMVGSASDFQL----------YTSGIYNGDCSNDPYYIDHAV 293
E A + I ++ S ++ C +D DHAV
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDT--ADHAV 201
Query: 294 LIVGYGS---ENGE--DYWIVKNSWGTSWGIDGYFYI 325
IVGYG+ GE YWIV+NSWG WG +GYF +
Sbjct: 202 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 38/217 (17%)
Query: 145 VKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYG--CDGGYMDYAFE 202
V+DQG+C + W F++ +E I + + +S + +C + CD G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 203 WVINN-GGIDTESDYPYTGV------------------DGTCNITKEETKVVSIDGYKDV 243
+I + G + ES+YPY V +G K E + GY
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 244 EPSDSALLCAAVQQPISVGMVGSASDFQL----------YTSGIYNGDCSNDPYYIDHAV 293
E A + I ++ S ++ C +D DHAV
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDT--ADHAV 202
Query: 294 LIVGYGS---ENGE--DYWIVKNSWGTSWGIDGYFYI 325
IVGYG+ GE YWIV+NSWG WG +GYF +
Sbjct: 203 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 40 ELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFR 99
+ F ++ + K+Y EE +RR+ FKNNL Y+ + + +N F D+S +EFR
Sbjct: 23 DAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFR 82
Query: 100 EIYL 103
YL
Sbjct: 83 RKYL 86
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 306 YWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
YW+VKNSWG WG+ GY + +D C I + ASYP
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRR---NHCGIASAASYP 40
>pdb|2JYV|A Chain A, Human Granulin F
Length = 72
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 379 QCGDFSY-CPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLC 437
QC D + CP TCC + +D W GCCP A CC CCP CD+ C
Sbjct: 5 QCPDSQFECPDFSTCCVM---VDGSW--GCCPMPQASCCEDRVHCCPHG-AFCDLVHTRC 58
Query: 438 LK 439
+K
Sbjct: 59 IK 60
>pdb|2JYT|A Chain A, Human Granulin C, Isomer 1
pdb|2JYU|A Chain A, Human Granulin C, Isomer 2
Length = 69
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 380 CGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLK 439
C + S CPS +TCC + +GCCP AVCCS Q CCP Y + EG C K
Sbjct: 5 CDNVSSCPSSDTCCQLTSGE-----WGCCPIPEAVCCSDHQHCCPQGYTC--VAEGQCQK 57
>pdb|2JYE|A Chain A, Human Granulin A
Length = 72
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 386 CPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYL 445
CP G TCC + +GCCP+ AVCC CCPA + CD ++G C +K L
Sbjct: 12 CPDGYTCCRLQS-----GAWGCCPFTQAVCCEDHIHCCPAGF-TCDTQKGTCEQKLAAAL 65
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 84/216 (38%), Gaps = 50/216 (23%)
Query: 145 VKDQGSCGSCWSFSTTGAI--EGINALVTGDLIS------LSEQELVDCDTTSYGCDGGY 196
V DQG GSC + + AI E I+ + + I +E+++ D G
Sbjct: 69 VYDQGRIGSCTANALAAAIQFERIHDKQSPEFIPSRLFIYYNERKI----EGHVNYDSGA 124
Query: 197 MDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEE-------TKVVSIDGYKDVE----- 244
M V++ G+ E ++PY D + EE +K S YKD +
Sbjct: 125 MIRDGIKVLHKLGVCPEKEWPYG--DTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKIT 182
Query: 245 -------PSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCS--------NDPYYI 289
D C AV P G F +Y S + N ND
Sbjct: 183 EYSRVAQDIDHLKACLAVGSPFVFG-------FSVYNSWVGNNSLPVRIPLPTKNDTLEG 235
Query: 290 DHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYI 325
HAVL VGY E ++ ++NSWG + G DGYF++
Sbjct: 236 GHAVLCVGYDDEI--RHFRIRNSWGNNVGEDGYFWM 269
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 7/41 (17%)
Query: 131 PSSLD----WRKRGIVTPVKDQGSCGSCWSFSTTGAIEGIN 167
P+S D W + + ++DQGSCGSCW+F GA+E I+
Sbjct: 2 PASFDAREQWPQCPTIKEIRDQGSCGSCWAF---GAVEAIS 39
>pdb|1FWO|A Chain A, The Solution Structure Of A 35-Residue Fragment From The
GranulinEPITHELIN-Like Subdomain Of Rice Oryzain Beta
(Rob 382-416 (C398s,C399s,C407s,C413s))
Length = 35
Score = 35.4 bits (80), Expect = 0.072, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 380 CGDFSYCPSGETCCCIFGFLDFCWIYGCCPYE 411
C D CP+G TC FGF + ++GC P E
Sbjct: 4 CDDNFSCPAGSTCSSAFGFRNLSLVWGCSPVE 35
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 7/41 (17%)
Query: 131 PSSLDWRKRGIVTP----VKDQGSCGSCWSFSTTGAIEGIN 167
P S D R++ P ++DQGSCGSCW+F GA+E I+
Sbjct: 2 PESFDAREQWPNCPTIKEIRDQGSCGSCWAF---GAVEAIS 39
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 290 DHAVLIVGYGS-ENGEDYWIVKNSWGTSWGIDGYFYITR 327
DH I G + G +Y+ VKNSWGT+ +G +Y ++
Sbjct: 317 DHGXQIYGIAKDQEGNEYYXVKNSWGTNSKYNGIWYASK 355
>pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1752
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 192 CDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALL 251
+ G + A EWV+ GI+ GVD T + +++ I G +E + SALL
Sbjct: 1299 IEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILG---IEATRSALL 1355
>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor
Etv6 Protein
Length = 118
Score = 28.5 bits (62), Expect = 8.1, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 31 EFVSEERVFELFQRWKDKHGKAYKHTEE--AERRFRNFKNNLEYVVEKKNNPGGHVVGLN 88
+ +S+ R +E F RW+DK K ++ + R + N KN EK + H LN
Sbjct: 17 QLLSDSR-YENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLN 75
Query: 89 KFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSS 133
+ E + + + ++ P G H Q PSS
Sbjct: 76 I---IRKEPGQRLLFRFMKTPDEIMSGRTDRLEHLESQELSGPSS 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,228,050
Number of Sequences: 62578
Number of extensions: 686722
Number of successful extensions: 2095
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1660
Number of HSP's gapped (non-prelim): 153
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)