Query 043774
Match_columns 485
No_of_seqs 408 out of 2090
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 3.2E-79 7E-84 597.6 25.4 298 37-346 66-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 3.4E-76 7.4E-81 601.4 36.2 302 34-345 30-338 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 2E-73 4.4E-78 597.4 31.3 309 32-347 159-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 1E-72 2.2E-77 590.3 34.0 307 32-348 116-446 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 4.1E-67 8.9E-72 531.0 30.0 288 46-346 30-323 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 1.8E-54 3.9E-59 424.0 22.4 210 130-345 1-240 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 1.3E-53 2.9E-58 416.8 23.1 211 130-346 1-237 (239)
8 cd02620 Peptidase_C1A_Cathepsi 100.0 1.4E-53 3.1E-58 415.9 21.4 205 131-343 1-234 (236)
9 cd02248 Peptidase_C1A Peptidas 100.0 1.4E-52 3E-57 400.8 23.2 207 131-345 1-210 (210)
10 PF00112 Peptidase_C1: Papain 100.0 8.5E-52 1.8E-56 396.2 19.6 212 130-346 1-219 (219)
11 PTZ00364 dipeptidyl-peptidase 100.0 1.9E-50 4.2E-55 428.4 24.0 212 128-345 203-457 (548)
12 PTZ00049 cathepsin C-like prot 100.0 3.3E-50 7.2E-55 430.6 23.4 215 128-348 379-677 (693)
13 smart00645 Pept_C1 Papain fami 100.0 9E-47 1.9E-51 351.4 18.5 166 130-341 1-169 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 1E-43 2.2E-48 340.9 20.2 194 133-329 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 1.2E-41 2.6E-46 374.0 22.3 200 142-348 544-782 (1004)
16 KOG1544 Predicted cysteine pro 100.0 1.5E-40 3.3E-45 321.1 6.5 267 71-345 151-458 (470)
17 KOG4296 Epithelin/granulin [Si 100.0 4.4E-29 9.5E-34 195.4 5.3 81 380-460 1-81 (90)
18 COG4870 Cysteine protease [Pos 99.9 2.8E-28 6.1E-33 242.1 7.0 193 128-329 97-314 (372)
19 smart00277 GRAN Granulin. 99.9 7.5E-23 1.6E-27 148.2 3.9 51 381-437 1-51 (51)
20 cd00585 Peptidase_C1B Peptidas 99.9 1E-21 2.3E-26 205.0 12.7 182 143-329 55-400 (437)
21 PF00396 Granulin: Granulin; 99.7 7.2E-19 1.6E-23 123.8 1.7 43 391-439 1-43 (43)
22 PF08246 Inhibitor_I29: Cathep 99.6 4.1E-16 8.9E-21 118.7 7.3 57 42-98 1-58 (58)
23 PF03051 Peptidase_C1_2: Pepti 99.6 7.9E-15 1.7E-19 153.6 14.7 181 143-328 56-400 (438)
24 smart00848 Inhibitor_I29 Cathe 99.5 5.8E-14 1.3E-18 106.2 5.2 56 42-97 1-57 (57)
25 COG3579 PepC Aminopeptidase C 98.8 2.4E-08 5.2E-13 98.8 8.8 80 246-327 296-401 (444)
26 KOG4128 Bleomycin hydrolases a 97.1 0.00065 1.4E-08 67.8 5.2 75 143-218 63-168 (457)
27 PF13529 Peptidase_C39_2: Pept 96.8 0.011 2.3E-07 51.7 9.9 57 245-313 87-144 (144)
28 PF08127 Propeptide_C1: Peptid 94.4 0.025 5.5E-07 39.7 1.8 35 70-106 3-37 (41)
29 PF05543 Peptidase_C47: Stapho 93.4 1.4 3.1E-05 40.7 11.7 118 147-314 18-145 (175)
30 PF14399 Transpep_BrtH: NlpC/p 81.9 3.1 6.7E-05 42.0 6.2 66 247-328 78-144 (317)
31 PF13956 Ibs_toxin: Toxin Ibs, 80.6 0.8 1.7E-05 26.1 0.7 13 1-13 2-14 (19)
32 PF09778 Guanylate_cyc_2: Guan 74.4 12 0.00026 36.0 7.3 62 245-311 111-180 (212)
33 cd00044 CysPc Calpains, domain 73.9 12 0.00026 38.0 7.8 42 288-329 234-303 (315)
34 COG5178 PRP8 U5 snRNP spliceos 72.3 3 6.5E-05 48.5 3.0 23 354-376 9-31 (2365)
35 COG4990 Uncharacterized protei 62.1 17 0.00037 33.9 5.3 47 245-314 121-168 (195)
36 cd02549 Peptidase_C39A A sub-f 61.1 22 0.00048 30.8 5.9 44 250-313 70-114 (141)
37 PF14625 Lustrin_cystein: Lust 58.6 8 0.00017 27.2 2.1 24 375-398 14-37 (45)
38 KOG1924 RhoA GTPase effector D 55.4 11 0.00024 42.5 3.4 20 457-477 627-646 (1102)
39 PF04885 Stig1: Stigma-specifi 45.3 35 0.00075 30.5 4.4 19 375-393 55-73 (136)
40 smart00289 WR1 Worm-specific r 45.2 18 0.00038 24.3 2.0 27 376-409 12-38 (38)
41 PF08194 DIM: DIM protein; In 43.1 19 0.00041 24.6 1.8 16 1-16 1-16 (36)
42 KOG1924 RhoA GTPase effector D 41.4 31 0.00066 39.2 4.1 17 33-49 83-99 (1102)
43 PF11567 PfUIS3: Plasmodium fa 37.9 22 0.00047 29.1 1.7 29 57-97 18-46 (101)
44 PF00648 Peptidase_C2: Calpain 35.3 56 0.0012 32.7 4.7 28 288-315 212-243 (298)
45 PF08107 Antimicrobial12: Pleu 33.5 14 0.0003 25.9 0.0 21 1-21 1-21 (42)
46 PF11912 DUF3430: Protein of u 32.9 29 0.00063 32.8 2.1 15 1-15 1-15 (212)
47 smart00230 CysPc Calpain-like 30.1 73 0.0016 32.5 4.6 28 288-315 226-255 (318)
48 PF15240 Pro-rich: Proline-ric 28.7 36 0.00078 31.8 1.8 14 5-18 3-16 (179)
49 PF11873 DUF3393: Domain of un 28.6 1.2E+02 0.0026 29.1 5.4 23 56-78 48-70 (204)
50 PF12385 Peptidase_C70: Papain 28.2 4.8E+02 0.01 24.1 10.1 38 246-301 97-135 (166)
51 PRK00888 ftsB cell division pr 26.0 88 0.0019 26.6 3.6 15 1-15 1-15 (105)
52 COG5510 Predicted small secret 25.8 39 0.00084 24.0 1.1 13 1-13 2-14 (44)
53 PF07305 DUF1454: Protein of u 25.5 70 0.0015 30.1 3.1 18 1-18 1-18 (200)
54 PF09403 FadA: Adhesion protei 24.6 1E+02 0.0023 27.2 3.9 18 1-18 1-18 (126)
55 PF10907 DUF2749: Protein of u 23.5 1.5E+02 0.0032 23.0 4.0 17 1-17 1-17 (66)
56 COG5178 PRP8 U5 snRNP spliceos 22.6 64 0.0014 38.4 2.7 22 351-372 9-30 (2365)
57 KOG4654 Uncharacterized conser 21.4 2.7E+02 0.0058 26.3 6.0 76 24-101 111-201 (252)
58 PRK09810 entericidin A; Provis 20.9 84 0.0018 22.1 2.1 15 1-15 2-16 (41)
59 PF02950 Conotoxin: Conotoxin; 20.4 34 0.00073 26.7 0.0 14 1-14 1-15 (75)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-79 Score=597.56 Aligned_cols=298 Identities=43% Similarity=0.814 Sum_probs=263.7
Q ss_pred HHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcC-CCCCeEEecccCCCCCHHHHHHHHhhccccccccccC
Q 043774 37 RVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKN-NPGGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIG 115 (485)
Q Consensus 37 ~~~~~F~~f~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~-~~~s~~~g~N~FsDlt~eEf~~~~~~~~~~~~~~~~~ 115 (485)
...+.|..|+.+|+|+|.+.+|..+|+.||+.|++.+++++. ...+.++|+|+|||||+|||+++|++.+.. .....+
T Consensus 66 ~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~-~~~~~~ 144 (372)
T KOG1542|consen 66 GLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRR-GSKLPG 144 (372)
T ss_pred chHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccc-cccCcc
Confidence 347899999999999999999999999999999999999988 445999999999999999999999887642 111111
Q ss_pred CccccccccccCCCCCCceeccCCCCCCcccCCCCCcchHHHHHHHHHHHHHHHHhCCCcccChhHhhhccCCCCCCCCC
Q 043774 116 NAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGG 195 (485)
Q Consensus 116 ~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~~~LS~Q~l~dC~~~~~gC~GG 195 (485)
.. .... ......||++||||++|.||||||||+||||||||+++++|++++|++|++++||||||+||+..+.||+||
T Consensus 145 ~~-~~~~-~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC~GG 222 (372)
T KOG1542|consen 145 DA-AEAP-IEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDNGCNGG 222 (372)
T ss_pred cc-ccCc-CCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCCcCCCC
Confidence 00 0111 123458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCcCCCCccccCCCCC-CccCCccCcceEEecceeecCCCHHHHHHHHH-cCCeEEEEeccCcccccc
Q 043774 196 YMDYAFEWVINNGGIDTESDYPYTGVDG-TCNITKEETKVVSIDGYKDVEPSDSALLCAAV-QQPISVGMVGSASDFQLY 273 (485)
Q Consensus 196 ~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~C~~~~~~~~~~~i~~y~~v~~~~~~l~~al~-~gPV~v~i~~~~~~f~~Y 273 (485)
.+.+||+|+++.+|+..|++|||++..+ .|...+ ...++.|++|..++.||+.|.+.|. +|||+|+|++ ..+|+|
T Consensus 223 l~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~-~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa--~~mQ~Y 299 (372)
T KOG1542|consen 223 LMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK-SKIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINA--KPMQFY 299 (372)
T ss_pred ChhHHHHHHHHhCCccccccCCccccCCCccccch-hhceEEEeccEecCCCHHHHHHHHHhcCCeEEEEch--HHHHHh
Confidence 9999999999999999999999999888 998765 6677899999999999999998877 5999999997 479999
Q ss_pred CCCeeeC---CCCCCCCccCeEEEEEEeeecC-CeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeeeeceee
Q 043774 274 TSGIYNG---DCSNDPYYIDHAVLIVGYGSEN-GEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346 (485)
Q Consensus 274 ~sGIy~~---~c~~~~~~~~HaV~iVGyg~~~-g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~~~yp~ 346 (485)
.+||+.+ .|+. ..++|||+|||||..+ .++|||||||||++|||+||+|+.||. |.|||+.+++-+.
T Consensus 300 rgGV~~P~~~~Cs~--~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~----N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 300 RGGVSCPSKYICSP--KLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGS----NACGIADMVSSAA 370 (372)
T ss_pred cccccCCCcccCCc--cccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccc----cccccccchhhhh
Confidence 9999987 5765 3599999999999887 899999999999999999999999996 6999999987653
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=3.4e-76 Score=601.44 Aligned_cols=302 Identities=36% Similarity=0.690 Sum_probs=252.0
Q ss_pred ChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcCCCCCeEEecccCCCCCHHHHHHHHhhccccccccc
Q 043774 34 SEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLKKIQKPIGKA 113 (485)
Q Consensus 34 ~~~~~~~~F~~f~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~s~~~g~N~FsDlt~eEf~~~~~~~~~~~~~~~ 113 (485)
.+..+..+|++|+++|+|+|.+.+|+.+|++||++|+++|++||+.+.+|++|+|+|+|||+|||.+++++.........
T Consensus 30 ~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~ 109 (348)
T PTZ00203 30 VGTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAK 109 (348)
T ss_pred cccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCccccccc
Confidence 35567778999999999999998899999999999999999999867799999999999999999988764221100000
Q ss_pred cCCcccccccc-ccCCCCCCceeccCCCCCCcccCCCCCcchHHHHHHHHHHHHHHHHhCCCcccChhHhhhccCCCCCC
Q 043774 114 IGNAKSNLHKT-VQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGC 192 (485)
Q Consensus 114 ~~~~~~~~~~~-~~~~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~~~LS~Q~l~dC~~~~~gC 192 (485)
. ......... ....+||++||||++|+|+||||||.||||||||+++++|+++++++++++.||+|||+||+..+.||
T Consensus 110 ~-~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~~~GC 188 (348)
T PTZ00203 110 Q-HAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDNGC 188 (348)
T ss_pred c-cccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCCCCCC
Confidence 0 000000010 11136899999999999999999999999999999999999999999999999999999999888899
Q ss_pred CCCchHHHHHHHHHc--CCcCCCCccccCCCCC---CccCCccCcceEEecceeecCCCHHHHHHHHHc-CCeEEEEecc
Q 043774 193 DGGYMDYAFEWVINN--GGIDTESDYPYTGVDG---TCNITKEETKVVSIDGYKDVEPSDSALLCAAVQ-QPISVGMVGS 266 (485)
Q Consensus 193 ~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~l~~al~~-gPV~v~i~~~ 266 (485)
+||++..||+|++++ +|+.+|++|||.+.++ .|...........+++|..++.+++.|+.+|++ |||+|+|++
T Consensus 189 ~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a- 267 (348)
T PTZ00203 189 GGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDA- 267 (348)
T ss_pred CCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEEEEEh-
Confidence 999999999999865 6799999999998766 686432222345788998887788899998885 999999997
Q ss_pred CccccccCCCeeeCCCCCCCCccCeEEEEEEeeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeeeecee
Q 043774 267 ASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345 (485)
Q Consensus 267 ~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~~~yp 345 (485)
.+|++|++|||+. |.. ..+||||+|||||+++|++|||||||||++|||+|||||+|+. |.|||+.+++..
T Consensus 268 -~~f~~Y~~GIy~~-c~~--~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~----n~Cgi~~~~~~~ 338 (348)
T PTZ00203 268 -SSFMSYHSGVLTS-CIG--EQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGV----NACLLTGYPVSV 338 (348)
T ss_pred -hhhcCccCceeec-cCC--CCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCC----CcccccceEEEE
Confidence 3899999999985 754 2479999999999988999999999999999999999999985 689999776664
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=2e-73 Score=597.41 Aligned_cols=309 Identities=36% Similarity=0.627 Sum_probs=258.6
Q ss_pred CCChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcC-CCCCeEEecccCCCCCHHHHHHHHhhcccc-c
Q 043774 32 FVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKN-NPGGHVVGLNKFADMSNEEFREIYLKKIQK-P 109 (485)
Q Consensus 32 ~~~~~~~~~~F~~f~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~-~~~s~~~g~N~FsDlt~eEf~~~~~~~~~~-~ 109 (485)
+.+..+....|++|+.+|+|+|.+.+|+.+|+.||++|+++|++||+ .+.+|++|+|+|+|||.|||++++++.... .
T Consensus 159 ~~~n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~ 238 (489)
T PTZ00021 159 LMTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDF 238 (489)
T ss_pred hccChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhcccccccc
Confidence 55667777899999999999999999999999999999999999997 568999999999999999999988764311 0
Q ss_pred ccccc--CCc--cc-c-ccccccC-CCCCCceeccCCCCCCcccCCCCCcchHHHHHHHHHHHHHHHHhCCCcccChhHh
Q 043774 110 IGKAI--GNA--KS-N-LHKTVQS-CEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQEL 182 (485)
Q Consensus 110 ~~~~~--~~~--~~-~-~~~~~~~-~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~~~LS~Q~l 182 (485)
..... ... .. . ....... ..+|++||||+.|.|+||||||.||||||||+++++|++++|++++++.||+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqL 318 (489)
T PTZ00021 239 KSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQEL 318 (489)
T ss_pred ccccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHH
Confidence 00000 000 00 0 0000111 1249999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCchHHHHHHHHHcCCcCCCCccccCCC-CCCccCCccCcceEEecceeecCCCHHHHHHHHHc-CCeE
Q 043774 183 VDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGV-DGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQ-QPIS 260 (485)
Q Consensus 183 ~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~C~~~~~~~~~~~i~~y~~v~~~~~~l~~al~~-gPV~ 260 (485)
+||+..+.||+||++..||.|+++++||++|++|||.+. .+.|.... ....++|++|..++ +++|+++|+. |||+
T Consensus 319 VDCs~~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~-~~~~~~i~~y~~i~--~~~lk~al~~~GPVs 395 (489)
T PTZ00021 319 VDCSFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDR-CKEKYKIKSYVSIP--EDKFKEAIRFLGPIS 395 (489)
T ss_pred hhhccCCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCcccccc-ccccceeeeEEEec--HHHHHHHHHhcCCeE
Confidence 999988899999999999999988889999999999987 47897532 23456788888875 5688989985 9999
Q ss_pred EEEeccCccccccCCCeeeCCCCCCCCccCeEEEEEEeeecCC----------eeEEEEEcCCCCCCCCCceEEEEeCCC
Q 043774 261 VGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENG----------EDYWIVKNSWGTSWGIDGYFYITRDTS 330 (485)
Q Consensus 261 v~i~~~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~~g----------~~yWivkNSWG~~WGe~GY~ri~r~~~ 330 (485)
|+|++. .+|++|++|||++.|+. .++|||+|||||++++ .+|||||||||++|||+|||||+|+.+
T Consensus 396 v~i~a~-~~f~~YkgGIy~~~C~~---~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~ 471 (489)
T PTZ00021 396 VSIAVS-DDFAFYKGGIFDGECGE---EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDEN 471 (489)
T ss_pred EEEEee-cccccCCCCcCCCCCCC---ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCC
Confidence 999985 68999999999988865 4799999999997532 479999999999999999999999875
Q ss_pred CCCCceeeeeeeceeee
Q 043774 331 LEYGKCAINAMASYPIK 347 (485)
Q Consensus 331 ~~~~~CgI~~~~~yp~~ 347 (485)
...|+|||++.++||+.
T Consensus 472 g~~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 472 GLMKTCSLGTEAYVPLI 488 (489)
T ss_pred CCCCCCCCcccceeEec
Confidence 44579999999999975
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1e-72 Score=590.33 Aligned_cols=307 Identities=38% Similarity=0.673 Sum_probs=256.3
Q ss_pred CCChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcCCCCCeEEecccCCCCCHHHHHHHHhhccccccc
Q 043774 32 FVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLKKIQKPIG 111 (485)
Q Consensus 32 ~~~~~~~~~~F~~f~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~s~~~g~N~FsDlt~eEf~~~~~~~~~~~~~ 111 (485)
...+.++...|++|+++|+|+|.+.+|+.+|+.||++|+++|++||. +.+|++|+|+|+|||+|||.+++++.......
T Consensus 116 ~~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~ 194 (448)
T PTZ00200 116 PKLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKS 194 (448)
T ss_pred ccchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-cCCeEEeccccccCCHHHHHHHhccCCCcccc
Confidence 45667788899999999999999999999999999999999999996 57899999999999999999987653321100
Q ss_pred cc--c----------CCcc-ccccc------cc--cCCCCCCceeccCCCCCCcccCCC-CCcchHHHHHHHHHHHHHHH
Q 043774 112 KA--I----------GNAK-SNLHK------TV--QSCEAPSSLDWRKRGIVTPVKDQG-SCGSCWSFSTTGAIEGINAL 169 (485)
Q Consensus 112 ~~--~----------~~~~-~~~~~------~~--~~~~lP~s~DwR~~g~vtpVkdQg-~CGsCwAfA~~~~lE~~~~i 169 (485)
.. . .... ..... .. ....+|++||||+.|.|+|||||| .||||||||+++++|+++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i 274 (448)
T PTZ00200 195 NSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKI 274 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHH
Confidence 00 0 0000 00000 00 011369999999999999999999 99999999999999999999
Q ss_pred HhCCCcccChhHhhhccCCCCCCCCCchHHHHHHHHHcCCcCCCCccccCCCCCCccCCccCcceEEecceeecCCCHHH
Q 043774 170 VTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249 (485)
Q Consensus 170 ~~~~~~~LS~Q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~ 249 (485)
.++..+.||+|||+||+..+.||+||++..|++|+.++ ||++|++|||.+..+.|.... ...+.|.+|..+. ..+.
T Consensus 275 ~~~~~~~LSeQqLvDC~~~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~-~~~~ 350 (448)
T PTZ00200 275 YRDKSVDLSEQELVNCDTKSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK-GKDV 350 (448)
T ss_pred hcCCCeecCHHHHhhccCccCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCC--CCeeEecceEecC-HHHH
Confidence 99999999999999999888999999999999999666 999999999999999997543 2345688887664 4567
Q ss_pred HHHHHHcCCeEEEEeccCccccccCCCeeeCCCCCCCCccCeEEEEEEeee--cCCeeEEEEEcCCCCCCCCCceEEEEe
Q 043774 250 LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGS--ENGEDYWIVKNSWGTSWGIDGYFYITR 327 (485)
Q Consensus 250 l~~al~~gPV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~--~~g~~yWivkNSWG~~WGe~GY~ri~r 327 (485)
+++++..|||+|+|.+. .+|++|++|||++.|+. .++|||+|||||. ++|.+|||||||||++|||+|||||+|
T Consensus 351 l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~---~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r 426 (448)
T PTZ00200 351 LNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGK---SLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLER 426 (448)
T ss_pred HHHHHhcCCEEEEeecc-cccccCCCCccccccCC---CCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEe
Confidence 77788789999999985 68999999999988876 4799999999983 468899999999999999999999999
Q ss_pred CCCCCCCceeeeeeeceeeec
Q 043774 328 DTSLEYGKCAINAMASYPIKE 348 (485)
Q Consensus 328 ~~~~~~~~CgI~~~~~yp~~~ 348 (485)
+.. +.|.|||++.+.||+..
T Consensus 427 ~~~-g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 427 TNE-GTDKCGILTVGLTPVFY 446 (448)
T ss_pred CCC-CCCcCCccccceeeEEe
Confidence 742 46899999999999874
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-67 Score=530.98 Aligned_cols=288 Identities=44% Similarity=0.812 Sum_probs=249.3
Q ss_pred HHHhCCccCChHHHHHHHHHHHHHHHHHHHhcCC-CCCeEEecccCCCCCHHHHHHHHhhccccccccccCCcccccccc
Q 043774 46 KDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNN-PGGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKT 124 (485)
Q Consensus 46 ~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~-~~s~~~g~N~FsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (485)
+.+|.+.|.+..|+..|+.+|++|+++|+.||.. ..+|++|+|+|+|++.+||+..+.+........ ......
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~~------~~~~~~ 103 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIKR------DKFTEK 103 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccccc------cccccc
Confidence 6677777777789999999999999999999994 899999999999999999999887655332210 111122
Q ss_pred ccCCCCCCceeccCCC-CCCcccCCCCCcchHHHHHHHHHHHHHHHHhC-CCcccChhHhhhccCC-CCCCCCCchHHHH
Q 043774 125 VQSCEAPSSLDWRKRG-IVTPVKDQGSCGSCWSFSTTGAIEGINALVTG-DLISLSEQELVDCDTT-SYGCDGGYMDYAF 201 (485)
Q Consensus 125 ~~~~~lP~s~DwR~~g-~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~-~~~~LS~Q~l~dC~~~-~~gC~GG~~~~a~ 201 (485)
....++|++||||++| .++||||||.||||||||++++||++++|+++ .++.||+|+|+||+.. +.||+||.+..|+
T Consensus 104 ~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~ 183 (325)
T KOG1543|consen 104 LDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAF 183 (325)
T ss_pred cchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHH
Confidence 2234899999999996 55569999999999999999999999999999 8999999999999984 8899999999999
Q ss_pred HHHHHcCCcCCCCccccCCCCCCccCCccCcceEEecceeecCCCHHHHHHHHHc-CCeEEEEeccCccccccCCCeeeC
Q 043774 202 EWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQ-QPISVGMVGSASDFQLYTSGIYNG 280 (485)
Q Consensus 202 ~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~ 280 (485)
+|+.+++++.++++|||.+.++.|..... ...+.+.++..++.++++|+++|++ |||+|+|++.. +|++|++|||.+
T Consensus 184 ~yi~~~G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~~GVy~~ 261 (325)
T KOG1543|consen 184 KYIKKNGGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYE-DFSLYKGGVYAE 261 (325)
T ss_pred HHHHHhCCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehh-hhhhccCceEeC
Confidence 99999966665999999999999997655 5667788888888779999999986 89999999965 999999999998
Q ss_pred CCCCCCCccCeEEEEEEeeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeeeece-ee
Q 043774 281 DCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASY-PI 346 (485)
Q Consensus 281 ~c~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~~~y-p~ 346 (485)
++.... .++|||+|||||+.++.+|||||||||+.|||+|||||.|+. +.|+|++.++| |+
T Consensus 262 ~~~~~~-~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~----~~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 262 EKGDDK-EGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGV----NKCGIASEASYGPI 323 (325)
T ss_pred CCCCCC-CCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCC----CchhhhcccccCCC
Confidence 755532 589999999999966789999999999999999999999997 48999999988 54
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.8e-54 Score=424.03 Aligned_cols=210 Identities=37% Similarity=0.733 Sum_probs=178.9
Q ss_pred CCCceeccCCC----CCCcccCCCCCcchHHHHHHHHHHHHHHHHhCC------CcccChhHhhhccCCCCCCCCCchHH
Q 043774 130 APSSLDWRKRG----IVTPVKDQGSCGSCWSFSTTGAIEGINALVTGD------LISLSEQELVDCDTTSYGCDGGYMDY 199 (485)
Q Consensus 130 lP~s~DwR~~g----~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~------~~~LS~Q~l~dC~~~~~gC~GG~~~~ 199 (485)
||++||||+.+ +|+||||||.||||||||++++||++++|++++ .+.||+|||+||+..+.||+||++..
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~~~~ 80 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGFPFL 80 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCCHHH
Confidence 79999999998 999999999999999999999999999998876 68899999999998788999999999
Q ss_pred HHHHHHHcCCcCCCCccccCC-CCCCccCCccCcceEEecceeec-----CCCHHHHHHHHH-cCCeEEEEeccCccccc
Q 043774 200 AFEWVINNGGIDTESDYPYTG-VDGTCNITKEETKVVSIDGYKDV-----EPSDSALLCAAV-QQPISVGMVGSASDFQL 272 (485)
Q Consensus 200 a~~~~~~~~Gi~~e~~yPY~~-~~~~C~~~~~~~~~~~i~~y~~v-----~~~~~~l~~al~-~gPV~v~i~~~~~~f~~ 272 (485)
+++|+.++ |+++|++|||.. ..+.|.........+.+..|..+ ..++++|+++|. +|||+|+|++. ++|++
T Consensus 81 a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~~ 158 (243)
T cd02621 81 VGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFDF 158 (243)
T ss_pred HHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-ccccc
Confidence 99998766 899999999998 77889754312222334444333 257889999887 59999999985 68999
Q ss_pred cCCCeeeCC-----CCCCC------CccCeEEEEEEeeecC--CeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeee
Q 043774 273 YTSGIYNGD-----CSNDP------YYIDHAVLIVGYGSEN--GEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAIN 339 (485)
Q Consensus 273 Y~sGIy~~~-----c~~~~------~~~~HaV~iVGyg~~~--g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~ 339 (485)
|++|||+.. |.... ..++|||+|||||++. |++|||||||||++|||+|||||+|+. |.|||+
T Consensus 159 Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~----~~cgi~ 234 (243)
T cd02621 159 YKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT----NECGIE 234 (243)
T ss_pred cCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC----cccCcc
Confidence 999999864 54321 2479999999999876 899999999999999999999999985 589999
Q ss_pred eeecee
Q 043774 340 AMASYP 345 (485)
Q Consensus 340 ~~~~yp 345 (485)
+++.+.
T Consensus 235 ~~~~~~ 240 (243)
T cd02621 235 SQAVFA 240 (243)
T ss_pred cceEee
Confidence 998764
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=1.3e-53 Score=416.79 Aligned_cols=211 Identities=30% Similarity=0.637 Sum_probs=179.9
Q ss_pred CCCceeccCCC---CCCcccCCC---CCcchHHHHHHHHHHHHHHHHhC---CCcccChhHhhhccCCCCCCCCCchHHH
Q 043774 130 APSSLDWRKRG---IVTPVKDQG---SCGSCWSFSTTGAIEGINALVTG---DLISLSEQELVDCDTTSYGCDGGYMDYA 200 (485)
Q Consensus 130 lP~s~DwR~~g---~vtpVkdQg---~CGsCwAfA~~~~lE~~~~i~~~---~~~~LS~Q~l~dC~~~~~gC~GG~~~~a 200 (485)
||++||||+.+ +|+|||||| .||||||||++++||+++.|+++ ..+.||+|||+||+. +.||+||++..+
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~~~~a 79 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGDPGGV 79 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcCHHHH
Confidence 69999999988 999999998 89999999999999999999875 357899999999997 789999999999
Q ss_pred HHHHHHcCCcCCCCccccCCCCCCccCCc--------------cCcceEEecceeecCCCHHHHHHHHH-cCCeEEEEec
Q 043774 201 FEWVINNGGIDTESDYPYTGVDGTCNITK--------------EETKVVSIDGYKDVEPSDSALLCAAV-QQPISVGMVG 265 (485)
Q Consensus 201 ~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~--------------~~~~~~~i~~y~~v~~~~~~l~~al~-~gPV~v~i~~ 265 (485)
++|++++ |+++|++|||.+....|.... .....+.+++|..+. +++.|+++|. +|||+|+|.+
T Consensus 80 ~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~-~~~~i~~~l~~~GPV~v~i~~ 157 (239)
T cd02698 80 YEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS-GRDKMMAEIYARGPISCGIMA 157 (239)
T ss_pred HHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC-CHHHHHHHHHHcCCEEEEEEe
Confidence 9999776 899999999998776665311 112345677777775 5777888776 6999999998
Q ss_pred cCccccccCCCeeeCCCCCCCCccCeEEEEEEeeecC-CeeEEEEEcCCCCCCCCCceEEEEeCC-CCCCCceeeeeeec
Q 043774 266 SASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSEN-GEDYWIVKNSWGTSWGIDGYFYITRDT-SLEYGKCAINAMAS 343 (485)
Q Consensus 266 ~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~~-g~~yWivkNSWG~~WGe~GY~ri~r~~-~~~~~~CgI~~~~~ 343 (485)
. .+|+.|++|||+..+.. ..++|||+|||||+++ |++|||||||||++|||+|||||+|+. ....|+|||++.+.
T Consensus 158 ~-~~f~~Y~~GIy~~~~~~--~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~ 234 (239)
T cd02698 158 T-EALENYTGGVYKEYVQD--PLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCA 234 (239)
T ss_pred c-ccccccCCeEEccCCCC--CcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceE
Confidence 5 58999999999875433 3579999999999876 999999999999999999999999986 22247999999999
Q ss_pred eee
Q 043774 344 YPI 346 (485)
Q Consensus 344 yp~ 346 (485)
|+.
T Consensus 235 ~~~ 237 (239)
T cd02698 235 WAD 237 (239)
T ss_pred EEe
Confidence 874
No 8
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.4e-53 Score=415.89 Aligned_cols=205 Identities=33% Similarity=0.666 Sum_probs=173.7
Q ss_pred CCceeccCC--CC--CCcccCCCCCcchHHHHHHHHHHHHHHHHhC--CCcccChhHhhhccCC-CCCCCCCchHHHHHH
Q 043774 131 PSSLDWRKR--GI--VTPVKDQGSCGSCWSFSTTGAIEGINALVTG--DLISLSEQELVDCDTT-SYGCDGGYMDYAFEW 203 (485)
Q Consensus 131 P~s~DwR~~--g~--vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~--~~~~LS~Q~l~dC~~~-~~gC~GG~~~~a~~~ 203 (485)
|++||||++ ++ |+||+|||.||||||||++++||+++.++++ +.+.||+|||+||+.. +.||+||++..|++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 789999997 44 4599999999999999999999999999888 7789999999999985 889999999999999
Q ss_pred HHHcCCcCCCCccccCCCCCC------------------ccCCcc---CcceEEecceeecCCCHHHHHHHHH-cCCeEE
Q 043774 204 VINNGGIDTESDYPYTGVDGT------------------CNITKE---ETKVVSIDGYKDVEPSDSALLCAAV-QQPISV 261 (485)
Q Consensus 204 ~~~~~Gi~~e~~yPY~~~~~~------------------C~~~~~---~~~~~~i~~y~~v~~~~~~l~~al~-~gPV~v 261 (485)
+.++ |+++|++|||.+.... |..... ....+++..+..+..++++||.+|. +|||+|
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~v 159 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQA 159 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCCHHHHHHHHHHHCCCeEE
Confidence 9876 8999999999876543 332211 1122345556556567889998887 599999
Q ss_pred EEeccCccccccCCCeeeCCCCCCCCccCeEEEEEEeeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeee
Q 043774 262 GMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAM 341 (485)
Q Consensus 262 ~i~~~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~ 341 (485)
+|.+ .++|+.|++|||+..+.. ..++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||++.
T Consensus 160 ~i~~-~~~f~~Y~~Giy~~~~~~--~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi~~~ 232 (236)
T cd02620 160 AFTV-YEDFLYYKSGVYQHTSGK--QLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS----NECGIESE 232 (236)
T ss_pred EEEe-chhhhhcCCcEEeecCCC--CcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC----cccccccc
Confidence 9998 479999999999866543 3579999999999989999999999999999999999999985 68999988
Q ss_pred ec
Q 043774 342 AS 343 (485)
Q Consensus 342 ~~ 343 (485)
++
T Consensus 233 ~~ 234 (236)
T cd02620 233 VV 234 (236)
T ss_pred ee
Confidence 75
No 9
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1.4e-52 Score=400.79 Aligned_cols=207 Identities=57% Similarity=1.073 Sum_probs=184.9
Q ss_pred CCceeccCCCCCCcccCCCCCcchHHHHHHHHHHHHHHHHhCCCcccChhHhhhccCC-CCCCCCCchHHHHHHHHHcCC
Q 043774 131 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNGG 209 (485)
Q Consensus 131 P~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~~~LS~Q~l~dC~~~-~~gC~GG~~~~a~~~~~~~~G 209 (485)
|++||||+.+.++||+|||.||+|||||++++||++++++++..+.||+|+|++|... +.||+||....|++++.++ |
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~-G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG-G 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC-C
Confidence 7899999999999999999999999999999999999999998899999999999985 8899999999999987655 9
Q ss_pred cCCCCccccCCCCCCccCCccCcceEEecceeecC-CCHHHHHHHHHc-CCeEEEEeccCccccccCCCeeeCCCCCCCC
Q 043774 210 IDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVE-PSDSALLCAAVQ-QPISVGMVGSASDFQLYTSGIYNGDCSNDPY 287 (485)
Q Consensus 210 i~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~-~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~ 287 (485)
+++|++|||......|.... ....++|.+|..+. .+++.||++|++ |||+++|.+ .++|+.|++|||+.++.. ..
T Consensus 80 i~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~-~~~f~~y~~Giy~~~~~~-~~ 156 (210)
T cd02248 80 LASESDYPYTGKDGTCKYNS-SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDA-SSSFQFYKGGIYSGPCCS-NT 156 (210)
T ss_pred cCccccCCccCCCCCccCCC-CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEec-CcccccCCCCceeCCCCC-CC
Confidence 99999999998888897643 35567889998887 458889999986 899999998 468999999999875432 24
Q ss_pred ccCeEEEEEEeeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeeeecee
Q 043774 288 YIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345 (485)
Q Consensus 288 ~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~~~yp 345 (485)
.++|||+|||||++.+.+|||||||||++||++|||||+|+. +.|||+..+.||
T Consensus 157 ~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 157 NLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred cCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 679999999999988999999999999999999999999985 689999888775
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=8.5e-52 Score=396.20 Aligned_cols=212 Identities=49% Similarity=0.897 Sum_probs=182.9
Q ss_pred CCCceeccCC-CCCCcccCCCCCcchHHHHHHHHHHHHHHHHh-CCCcccChhHhhhccC-CCCCCCCCchHHHHHHHHH
Q 043774 130 APSSLDWRKR-GIVTPVKDQGSCGSCWSFSTTGAIEGINALVT-GDLISLSEQELVDCDT-TSYGCDGGYMDYAFEWVIN 206 (485)
Q Consensus 130 lP~s~DwR~~-g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~-~~~~~LS~Q~l~dC~~-~~~gC~GG~~~~a~~~~~~ 206 (485)
||++||||+. +.++||+|||.||+|||||+++++|++++++. +..+.||+|+|++|.. .+.+|+||++..|++++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999999 7889999999999998 6789999999999999988
Q ss_pred cCCcCCCCccccCCCC-CCccCCccCcceEEecceeecC-CCHHHHHHHHHc-CCeEEEEeccCccccccCCCeeeCC-C
Q 043774 207 NGGIDTESDYPYTGVD-GTCNITKEETKVVSIDGYKDVE-PSDSALLCAAVQ-QPISVGMVGSASDFQLYTSGIYNGD-C 282 (485)
Q Consensus 207 ~~Gi~~e~~yPY~~~~-~~C~~~~~~~~~~~i~~y~~v~-~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~~-c 282 (485)
+.|+++|++|||.... ..|.........+++..|..+. .+.++|+++|.+ |||+++|.+...+|+.|++|||+.+ +
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~ 160 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDC 160 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSS
T ss_pred cCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccc
Confidence 4599999999999877 6887654333356888888887 469999999997 9999999996546999999999875 4
Q ss_pred CCCCCccCeEEEEEEeeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeeeeceee
Q 043774 283 SNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346 (485)
Q Consensus 283 ~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~~~yp~ 346 (485)
.. ..++|||+|||||++.+++|||||||||++||++|||||+|+.+ ++|||+..++||+
T Consensus 161 ~~--~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 161 SN--ESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp SS--SSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred cc--ccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 43 47899999999999999999999999999999999999999864 5999999999996
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.9e-50 Score=428.43 Aligned_cols=212 Identities=24% Similarity=0.499 Sum_probs=176.4
Q ss_pred CCCCCceeccCCC---CCCcccCCCC---CcchHHHHHHHHHHHHHHHHhC------CCcccChhHhhhccCCCCCCCCC
Q 043774 128 CEAPSSLDWRKRG---IVTPVKDQGS---CGSCWSFSTTGAIEGINALVTG------DLISLSEQELVDCDTTSYGCDGG 195 (485)
Q Consensus 128 ~~lP~s~DwR~~g---~vtpVkdQg~---CGsCwAfA~~~~lE~~~~i~~~------~~~~LS~Q~l~dC~~~~~gC~GG 195 (485)
.+||++||||+.| +|+||||||. ||||||||++++||++++|+++ +.+.||+|+|+||+..++||+||
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdGG 282 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAGG 282 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCCC
Confidence 4799999999987 7999999999 9999999999999999999884 46889999999999888999999
Q ss_pred chHHHHHHHHHcCCcCCCCcc--ccCCCCC---CccCCccCcc-----eEEecceeecCCCHHHHHHHHH-cCCeEEEEe
Q 043774 196 YMDYAFEWVINNGGIDTESDY--PYTGVDG---TCNITKEETK-----VVSIDGYKDVEPSDSALLCAAV-QQPISVGMV 264 (485)
Q Consensus 196 ~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~C~~~~~~~~-----~~~i~~y~~v~~~~~~l~~al~-~gPV~v~i~ 264 (485)
++..|++|+.++ ||++|++| ||.+.++ .|........ ...+.+|..+.+++++|+.+|+ +|||+|+|+
T Consensus 283 ~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaId 361 (548)
T PTZ00364 283 FPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVY 361 (548)
T ss_pred cHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEEE
Confidence 999999999766 99999999 9987655 5875432211 2234455555567888998887 599999999
Q ss_pred ccCccccccCCCeeeC---------CCCC-C-------CCccCeEEEEEEeee-cCCeeEEEEEcCCCC--CCCCCceEE
Q 043774 265 GSASDFQLYTSGIYNG---------DCSN-D-------PYYIDHAVLIVGYGS-ENGEDYWIVKNSWGT--SWGIDGYFY 324 (485)
Q Consensus 265 ~~~~~f~~Y~sGIy~~---------~c~~-~-------~~~~~HaV~iVGyg~-~~g~~yWivkNSWG~--~WGe~GY~r 324 (485)
+. .+|+.|++|||.+ .|.. + ...+||||+|||||+ ++|.+|||||||||+ +|||+||||
T Consensus 362 a~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfR 440 (548)
T PTZ00364 362 AN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRK 440 (548)
T ss_pred ec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEE
Confidence 85 6899999999852 1111 0 135799999999996 578999999999999 999999999
Q ss_pred EEeCCCCCCCceeeeeeecee
Q 043774 325 ITRDTSLEYGKCAINAMASYP 345 (485)
Q Consensus 325 i~r~~~~~~~~CgI~~~~~yp 345 (485)
|+|+. |.|||+++++..
T Consensus 441 I~RG~----N~CGIes~~v~~ 457 (548)
T PTZ00364 441 IARGV----NAYNIESEVVVM 457 (548)
T ss_pred EEcCC----Ccccccceeeee
Confidence 99986 699999998743
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=3.3e-50 Score=430.56 Aligned_cols=215 Identities=28% Similarity=0.534 Sum_probs=177.3
Q ss_pred CCCCCceeccCC----CCCCcccCCCCCcchHHHHHHHHHHHHHHHHhCCC----------cccChhHhhhccCCCCCCC
Q 043774 128 CEAPSSLDWRKR----GIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDL----------ISLSEQELVDCDTTSYGCD 193 (485)
Q Consensus 128 ~~lP~s~DwR~~----g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~----------~~LS~Q~l~dC~~~~~gC~ 193 (485)
.+||++||||+. +.++||+|||.||||||||++++||++++|++++. ..||+|+|+||+..++||+
T Consensus 379 ~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC~ 458 (693)
T PTZ00049 379 DELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGCN 458 (693)
T ss_pred ccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCcC
Confidence 489999999984 67999999999999999999999999999987431 2799999999998889999
Q ss_pred CCchHHHHHHHHHcCCcCCCCccccCCCCCCccCCccC--------------------------------------cceE
Q 043774 194 GGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEE--------------------------------------TKVV 235 (485)
Q Consensus 194 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~--------------------------------------~~~~ 235 (485)
||++..|++|+.++ ||++|++|||.+..+.|...... ...+
T Consensus 459 GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 537 (693)
T PTZ00049 459 GGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARW 537 (693)
T ss_pred CCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccce
Confidence 99999999999776 99999999999888888532110 1122
Q ss_pred EecceeecC--------CCHHHHHHHHH-cCCeEEEEeccCccccccCCCeeeC-------CCCCC------------CC
Q 043774 236 SIDGYKDVE--------PSDSALLCAAV-QQPISVGMVGSASDFQLYTSGIYNG-------DCSND------------PY 287 (485)
Q Consensus 236 ~i~~y~~v~--------~~~~~l~~al~-~gPV~v~i~~~~~~f~~Y~sGIy~~-------~c~~~------------~~ 287 (485)
.++.|..+. ++++.|+.+|. +|||+|+|++. .+|++|++|||+. .|..+ ..
T Consensus 538 y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e 616 (693)
T PTZ00049 538 YAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWE 616 (693)
T ss_pred eeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccccccc
Confidence 344555442 46888998887 59999999984 6899999999974 26432 12
Q ss_pred ccCeEEEEEEeeec--CCe--eEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeeeeceeeec
Q 043774 288 YIDHAVLIVGYGSE--NGE--DYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKE 348 (485)
Q Consensus 288 ~~~HaV~iVGyg~~--~g~--~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~~~yp~~~ 348 (485)
.++|||+|||||.+ +|+ +|||||||||++|||+|||||.|+. |.|||++.++|+...
T Consensus 617 ~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~----N~CGIEs~a~~~~pd 677 (693)
T PTZ00049 617 KVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK----NFSGIESQSLFIEPD 677 (693)
T ss_pred cCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC----CccCCccceeEEeee
Confidence 46999999999964 463 7999999999999999999999986 699999999987543
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=9e-47 Score=351.43 Aligned_cols=166 Identities=63% Similarity=1.193 Sum_probs=148.3
Q ss_pred CCCceeccCCCCCCcccCCCCCcchHHHHHHHHHHHHHHHHhCCCcccChhHhhhccCC-CCCCCCCchHHHHHHHHHcC
Q 043774 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNG 208 (485)
Q Consensus 130 lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~~~LS~Q~l~dC~~~-~~gC~GG~~~~a~~~~~~~~ 208 (485)
||++||||+.++++||+|||.||+|||||++++||+++++++++.+.||+|+|++|... +.||+||++..|++|+.+++
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999974 67999999999999998776
Q ss_pred CcCCCCccccCCCCCCccCCccCcceEEecceeecCCCHHHHHHHHHcCCeEEEEeccCccccccCCCeeeC-CCCCCCC
Q 043774 209 GIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNG-DCSNDPY 287 (485)
Q Consensus 209 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~l~~al~~gPV~v~i~~~~~~f~~Y~sGIy~~-~c~~~~~ 287 (485)
|+++|++|||.. ++.+.+ .+|++|++|||+. .|.. .
T Consensus 81 Gi~~e~~~PY~~---------------------------------------~~~~~~--~~f~~Y~~Gi~~~~~~~~--~ 117 (174)
T smart00645 81 GLETESCYPYTG---------------------------------------SVAIDA--SDFQFYKSGIYDHPGCGS--G 117 (174)
T ss_pred CcccccccCccc---------------------------------------EEEEEc--ccccCCcCeEECCCCCCC--C
Confidence 899999999975 455554 3699999999987 4654 2
Q ss_pred ccCeEEEEEEeeec-CCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeee
Q 043774 288 YIDHAVLIVGYGSE-NGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAM 341 (485)
Q Consensus 288 ~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~ 341 (485)
.++|+|+|||||.+ +|++|||||||||+.|||+|||||+|+. .+.|||+..
T Consensus 118 ~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~---~~~c~i~~~ 169 (174)
T smart00645 118 TLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGK---NNECGIEAS 169 (174)
T ss_pred cccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCC---CCccCceee
Confidence 47999999999986 8899999999999999999999999985 268999554
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=1e-43 Score=340.88 Aligned_cols=194 Identities=35% Similarity=0.523 Sum_probs=165.2
Q ss_pred ceeccCCCCCCcccCCCCCcchHHHHHHHHHHHHHHHHhC--CCcccChhHhhhccCC-----CCCCCCCchHHHHH-HH
Q 043774 133 SLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTG--DLISLSEQELVDCDTT-----SYGCDGGYMDYAFE-WV 204 (485)
Q Consensus 133 s~DwR~~g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~--~~~~LS~Q~l~dC~~~-----~~gC~GG~~~~a~~-~~ 204 (485)
.+|||+.+ ++||+|||.||+|||||+++++|+++.++++ +.+.||+|+|++|... ..||.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999998 9999999999999999999999999999987 8899999999999874 26999999999998 55
Q ss_pred HHcCCcCCCCccccCCCCCCccCC---ccCcceEEecceeecC-CCHHHHHHHHHc-CCeEEEEeccCccccccCCCeee
Q 043774 205 INNGGIDTESDYPYTGVDGTCNIT---KEETKVVSIDGYKDVE-PSDSALLCAAVQ-QPISVGMVGSASDFQLYTSGIYN 279 (485)
Q Consensus 205 ~~~~Gi~~e~~yPY~~~~~~C~~~---~~~~~~~~i~~y~~v~-~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~sGIy~ 279 (485)
. ..||++|++|||......|... ......+++..|..+. .++++||++|.+ |||+++|.+. ..|..|++|+|.
T Consensus 80 ~-~~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~ 157 (223)
T cd02619 80 A-LKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIY 157 (223)
T ss_pred H-HcCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCcccc
Confidence 4 4599999999999877766532 2234557788888877 568899999986 9999999984 789999999872
Q ss_pred ----CCCCCCCCccCeEEEEEEeeecC--CeeEEEEEcCCCCCCCCCceEEEEeCC
Q 043774 280 ----GDCSNDPYYIDHAVLIVGYGSEN--GEDYWIVKNSWGTSWGIDGYFYITRDT 329 (485)
Q Consensus 280 ----~~c~~~~~~~~HaV~iVGyg~~~--g~~yWivkNSWG~~WGe~GY~ri~r~~ 329 (485)
.........++|||+|||||++. +++|||||||||+.||++||+||+|+.
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 22222234689999999999887 899999999999999999999999985
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=373.96 Aligned_cols=200 Identities=26% Similarity=0.468 Sum_probs=158.6
Q ss_pred CCcccCCCCCcchHHHHHHHHHHHHHHHHhCCCcccChhHhhhccC--CCCCCCCCchH-HHHHHHHHcCCcCCCCcccc
Q 043774 142 VTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDT--TSYGCDGGYMD-YAFEWVINNGGIDTESDYPY 218 (485)
Q Consensus 142 vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~~~LS~Q~l~dC~~--~~~gC~GG~~~-~a~~~~~~~~Gi~~e~~yPY 218 (485)
..||||||.||+|||||+++++|++++++++..+.||+|||+||+. .+.||.||+.. .++.|+.+++||++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 5799999999999999999999999999999999999999999986 36899999755 55588878878999999999
Q ss_pred CC--CCCCccCCcc-----------------CcceEEecceeecCC-----C----HHHHHHHHHc-CCeEEEEeccCcc
Q 043774 219 TG--VDGTCNITKE-----------------ETKVVSIDGYKDVEP-----S----DSALLCAAVQ-QPISVGMVGSASD 269 (485)
Q Consensus 219 ~~--~~~~C~~~~~-----------------~~~~~~i~~y~~v~~-----~----~~~l~~al~~-gPV~v~i~~~~~~ 269 (485)
.. ..+.|..... ....+.+.+|..+.. + +++|+.+|++ |||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 5667864211 011234456655531 1 3688888886 9999999973 6
Q ss_pred cccc-CCCeee-CCCCCCCCccCeEEEEEEeeec-----CCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeeee
Q 043774 270 FQLY-TSGIYN-GDCSNDPYYIDHAVLIVGYGSE-----NGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMA 342 (485)
Q Consensus 270 f~~Y-~sGIy~-~~c~~~~~~~~HaV~iVGyg~~-----~g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~~ 342 (485)
|+.| .+|||. ..|+. ..++|||+|||||.+ .|++|||||||||+.|||+|||||.|.. .+.|||+...
T Consensus 702 f~~Y~~sGIyv~~~Cgs--~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g---~n~CGin~i~ 776 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGD--DTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG---PSHCEDNFIH 776 (1004)
T ss_pred HHhhhcCCccccCCCCC--CcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC---CCCCccchhe
Confidence 8888 489865 45865 257999999999963 2579999999999999999999999842 3689988776
Q ss_pred ceeeec
Q 043774 343 SYPIKE 348 (485)
Q Consensus 343 ~yp~~~ 348 (485)
.+++..
T Consensus 777 t~~~fn 782 (1004)
T PTZ00462 777 SVVIFN 782 (1004)
T ss_pred eeeeEe
Confidence 666554
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=321.07 Aligned_cols=267 Identities=24% Similarity=0.428 Sum_probs=205.1
Q ss_pred HHHHHhcCCCCCeEEecc-cCCCCCHHHHHHHHhhccccccccccCCccccccccccCCCCCCceeccCC--CCCCcccC
Q 043774 71 EYVVEKKNNPGGHVVGLN-KFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKR--GIVTPVKD 147 (485)
Q Consensus 71 ~~I~~~N~~~~s~~~g~N-~FsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~--g~vtpVkd 147 (485)
++|++.|.++.+|.++.. +|..||.++-.+..|+...+.+.....+ ..........+||+.||-|++ +++.++.|
T Consensus 151 d~iE~in~G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMN--Ei~~~l~p~~~LPE~F~As~KWp~liH~plD 228 (470)
T KOG1544|consen 151 DMIEAINQGNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMN--EIYTVLNPGEVLPEAFEASEKWPNLIHEPLD 228 (470)
T ss_pred HHHHHHhcCCccccccchhhhhcccccccceeeecccCchhhhhhHH--hHhhccCcccccchhhhhhhcCCccccCccc
Confidence 489999999999998754 9999999987777777664433221100 111112223589999999997 89999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhCC--CcccChhHhhhccC-CCCCCCCCchHHHHHHHHHcCCcCCCCccccCC----
Q 043774 148 QGSCGSCWSFSTTGAIEGINALVTGD--LISLSEQELVDCDT-TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTG---- 220 (485)
Q Consensus 148 Qg~CGsCwAfA~~~~lE~~~~i~~~~--~~~LS~Q~l~dC~~-~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~---- 220 (485)
||+|++.|||+++++...+++|.... ...||+|+|++|.. ..+||+||+++.|+=|+.+. |++...+|||.+
T Consensus 229 QgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~~ 307 (470)
T KOG1544|consen 229 QGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQAG 307 (470)
T ss_pred cCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCCC
Confidence 99999999999999999999987643 46799999999988 66899999999999888655 999999999974
Q ss_pred CCCCcc------------------CCccC-cceEEecceeecCCCHHHHHHHHH-cCCeEEEEeccCccccccCCCeeeC
Q 043774 221 VDGTCN------------------ITKEE-TKVVSIDGYKDVEPSDSALLCAAV-QQPISVGMVGSASDFQLYTSGIYNG 280 (485)
Q Consensus 221 ~~~~C~------------------~~~~~-~~~~~i~~y~~v~~~~~~l~~al~-~gPV~v~i~~~~~~f~~Y~sGIy~~ 280 (485)
..+.|- ....+ ..++..+.-+.|..+|++|++.|+ +|||-+.|.+ .++|..|++|||.+
T Consensus 308 ~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~V-HEDFF~YkgGiY~H 386 (470)
T KOG1544|consen 308 PAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEV-HEDFFLYKGGIYSH 386 (470)
T ss_pred CCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhh-hhhhhhhccceeec
Confidence 223332 11111 134445544556677888887776 6999988877 68999999999986
Q ss_pred CCCC------CCCccCeEEEEEEeeecCC-----eeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeeeecee
Q 043774 281 DCSN------DPYYIDHAVLIVGYGSENG-----EDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345 (485)
Q Consensus 281 ~c~~------~~~~~~HaV~iVGyg~~~g-----~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~~~yp 345 (485)
.... ....+.|+|.|.|||++.+ .+|||..||||+.|||+|||||.|+. |.|-|+++..-+
T Consensus 387 ~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGv----NecdIEsfvIgA 458 (470)
T KOG1544|consen 387 TPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGV----NECDIESFVIGA 458 (470)
T ss_pred cccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccc----cchhhhHhhhhh
Confidence 4322 1124689999999997632 58999999999999999999999997 589999876543
No 17
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms]
Probab=99.95 E-value=4.4e-29 Score=195.43 Aligned_cols=81 Identities=38% Similarity=1.092 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCeeceecCCCcccccccCcCCCCceecCCCCCCCCCCCCCcCCCCCccccccCCccchhhhhhhccccCC
Q 043774 380 CGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAKHKL 459 (485)
Q Consensus 380 c~~~~~c~~~~tcc~~~~~~~~~~~~~ccp~~~~~cc~d~~hccp~g~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 459 (485)
||.+++||+++||||+...+.+|+.|||||+++||||.|+.||||+|||+||+.+++|+.+.++++++++++|++|++.+
T Consensus 1 Cd~~~~Cp~~~TCCcl~e~~~~cfsWgCCp~e~A~CCdD~~hCCPh~ypVCD~~~~~Cl~k~ns~~sikal~kkpA~~~~ 80 (90)
T KOG4296|consen 1 CDSYTECPDSETCCCLYEYGGYCFSWGCCPMESAVCCDDRSHCCPHGYPVCDLQRSTCLMKKNSPTSIKALKKKPAIKTL 80 (90)
T ss_pred CCcceecCCCCceEEeeecCceeceeccccCCcceeecCCCccCCCCCcccccccceeeccCCCcccchhhccCCccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 043774 460 P 460 (485)
Q Consensus 460 ~ 460 (485)
+
T Consensus 81 ~ 81 (90)
T KOG4296|consen 81 E 81 (90)
T ss_pred c
Confidence 6
No 18
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-28 Score=242.11 Aligned_cols=193 Identities=31% Similarity=0.444 Sum_probs=130.3
Q ss_pred CCCCCceeccCCCCCCcccCCCCCcchHHHHHHHHHHHHHHHHhCCCcccChhHhhhccC--CCCCC-----CCCchHHH
Q 043774 128 CEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDT--TSYGC-----DGGYMDYA 200 (485)
Q Consensus 128 ~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~~~LS~Q~l~dC~~--~~~gC-----~GG~~~~a 200 (485)
..+|+.||||+.|.|+||||||.||+||||++++++|+.+.-.. ...+|+..+..--. ..++| +||....+
T Consensus 97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~ 174 (372)
T COG4870 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMS 174 (372)
T ss_pred ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccc
Confidence 46899999999999999999999999999999999999875433 34555554443221 22333 37777777
Q ss_pred HHHHHHcCCcCCCCccccCCCCCCccCCccCcceEEecceeecC-----CCHHHHHHHHHc-CCeE--EEEeccCccccc
Q 043774 201 FEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVE-----PSDSALLCAAVQ-QPIS--VGMVGSASDFQL 272 (485)
Q Consensus 201 ~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~-----~~~~~l~~al~~-gPV~--v~i~~~~~~f~~ 272 (485)
..|+.+..|.+.|.+-||......|.......+.+ ..-..++ -+...|++++.. |-++ +.|++. .+..
T Consensus 175 ~a~l~e~sgpv~et~d~y~~~s~~~~~~~p~~k~~--~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~--~~~~ 250 (372)
T COG4870 175 AAYLTEWSGPVYETDDPYSENSYFSPTNLPVTKHV--QEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDAT--NSLG 250 (372)
T ss_pred cccccccCCcchhhcCccccccccCCcCCchhhcc--ccceecccchhhhcccchHHHHhhhccccceeEEecc--cccc
Confidence 77888888999999999987766665432221111 1111122 123346666653 5443 224442 2222
Q ss_pred cCCCeeeCCCCCCCCccCeEEEEEEeeec----------CCeeEEEEEcCCCCCCCCCceEEEEeCC
Q 043774 273 YTSGIYNGDCSNDPYYIDHAVLIVGYGSE----------NGEDYWIVKNSWGTSWGIDGYFYITRDT 329 (485)
Q Consensus 273 Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~----------~g~~yWivkNSWG~~WGe~GY~ri~r~~ 329 (485)
..-+.|..... ...+|||+||||+|. .|.+.||||||||+.||++|||||+|..
T Consensus 251 ~~~~~~~~~s~---~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 251 ICIPYPYVDSG---ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred cccCCCCCCcc---ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 22233332221 367999999999975 2467999999999999999999999975
No 19
>smart00277 GRAN Granulin.
Probab=99.87 E-value=7.5e-23 Score=148.16 Aligned_cols=51 Identities=45% Similarity=1.174 Sum_probs=48.8
Q ss_pred CCCCCCCCCCeeceecCCCcccccccCcCCCCceecCCCCCCCCCCCCCcCCCCCcc
Q 043774 381 GDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLC 437 (485)
Q Consensus 381 ~~~~~c~~~~tcc~~~~~~~~~~~~~ccp~~~~~cc~d~~hccp~g~~~c~~~~~~c 437 (485)
|+.++||+++|||++.+| .||||||++||||+|+.||||+|| +||++.++|
T Consensus 1 d~~~~Cp~~~TCC~~~~g-----~wgCCP~~~AvCC~D~~hCCP~gy-~Cd~~~~~C 51 (51)
T smart00277 1 DSATSCPDGTTCCLLPQG-----SWGCCPLPNAVCCEDGIHCCPHGY-HCDTDGGTC 51 (51)
T ss_pred CCcccCCCCCeEcCCCCC-----CEECCCCCCCCccCCCCccCCCCC-eeCCCCCcC
Confidence 567899999999999998 999999999999999999999999 999999987
No 20
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.86 E-value=1e-21 Score=205.02 Aligned_cols=182 Identities=26% Similarity=0.385 Sum_probs=126.6
Q ss_pred CcccCCCCCcchHHHHHHHHHHHHHHHH-hCCCcccChhHhhhccC----------------------------CCCCCC
Q 043774 143 TPVKDQGSCGSCWSFSTTGAIEGINALV-TGDLISLSEQELVDCDT----------------------------TSYGCD 193 (485)
Q Consensus 143 tpVkdQg~CGsCwAfA~~~~lE~~~~i~-~~~~~~LS~Q~l~dC~~----------------------------~~~gC~ 193 (485)
.||+||++.|.||.||+..+||..+..+ ..+.+.||+.++.--+. ...-.+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 3899999999999999999999988774 45689999998865211 133468
Q ss_pred CCchHHHHHHHHHcCCcCCCCccccCCC---------------------------CCC----------------------
Q 043774 194 GGYMDYAFEWVINNGGIDTESDYPYTGV---------------------------DGT---------------------- 224 (485)
Q Consensus 194 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~~~---------------------- 224 (485)
||....+...+.++ |+++++.||-+.. .+.
T Consensus 135 GGqw~m~~~li~KY-GvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIEKY-GLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHHHc-CCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887655 9999999985410 000
Q ss_pred c----cC---------------Cc--c----------------------------CcceEEe-----------cceeecC
Q 043774 225 C----NI---------------TK--E----------------------------ETKVVSI-----------DGYKDVE 244 (485)
Q Consensus 225 C----~~---------------~~--~----------------------------~~~~~~i-----------~~y~~v~ 244 (485)
| .. .. . -.+.+.+ ..|..+
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nv- 292 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNV- 292 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEec-
Confidence 0 00 00 0 0000000 112222
Q ss_pred CCHHHHH----HHHHc-CCeEEEEeccCccccccCCCeeeCCCCC-------------------CCCccCeEEEEEEeee
Q 043774 245 PSDSALL----CAAVQ-QPISVGMVGSASDFQLYTSGIYNGDCSN-------------------DPYYIDHAVLIVGYGS 300 (485)
Q Consensus 245 ~~~~~l~----~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~~c~~-------------------~~~~~~HaV~iVGyg~ 300 (485)
..+.|+ ++|.. +||.+++++. .|..|++||++..... .....+|||+|||||.
T Consensus 293 -p~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~ 369 (437)
T cd00585 293 -PMDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDL 369 (437)
T ss_pred -CHHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEe
Confidence 244555 44555 5999999984 5779999999653110 0124689999999995
Q ss_pred -cCCe-eEEEEEcCCCCCCCCCceEEEEeCC
Q 043774 301 -ENGE-DYWIVKNSWGTSWGIDGYFYITRDT 329 (485)
Q Consensus 301 -~~g~-~yWivkNSWG~~WGe~GY~ri~r~~ 329 (485)
++|+ .||+||||||+.||++||++|+++-
T Consensus 370 D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~w 400 (437)
T cd00585 370 DEDGKPVKWKVENSWGEKVGKKGYFVMSDDW 400 (437)
T ss_pred cCCCCcceEEEEcccCCCCCCCcceehhHHH
Confidence 4576 6999999999999999999999874
No 21
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=99.73 E-value=7.2e-19 Score=123.81 Aligned_cols=43 Identities=56% Similarity=1.328 Sum_probs=40.6
Q ss_pred eeceecCCCcccccccCcCCCCceecCCCCCCCCCCCCCcCCCCCcccc
Q 043774 391 TCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLK 439 (485)
Q Consensus 391 tcc~~~~~~~~~~~~~ccp~~~~~cc~d~~hccp~g~~~c~~~~~~c~~ 439 (485)
|||++.++ .|||||+++||||+|+.||||+|| +||++.++|+|
T Consensus 1 TCC~~~~g-----~~~CCP~~~avCC~D~~hCCP~G~-~C~~~~~~C~k 43 (43)
T PF00396_consen 1 TCCKTPSG-----GYGCCPYPNAVCCSDGKHCCPHGY-TCDPDGGSCIK 43 (43)
T ss_dssp EEEE-TTS-----SEEEEETSSSTTSSTTTTSSSTTS-EEECTTTEEES
T ss_pred CCcccCCC-----CccccCCCCCCccCCCCccCCCcC-EECCCCCEEcC
Confidence 89999998 899999999999999999999999 99999999986
No 22
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.64 E-value=4.1e-16 Score=118.73 Aligned_cols=57 Identities=47% Similarity=0.778 Sum_probs=51.4
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhc-CCCCCeEEecccCCCCCHHHH
Q 043774 42 FQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKK-NNPGGHVVGLNKFADMSNEEF 98 (485)
Q Consensus 42 F~~f~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N-~~~~s~~~g~N~FsDlt~eEf 98 (485)
|++|+++|+|+|.+.+|+.+|+.+|++|+++|.+|| .++.+|++|+|+|+|||.+||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 899999999999999999999999999999999999 688999999999999999997
No 23
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.60 E-value=7.9e-15 Score=153.61 Aligned_cols=181 Identities=28% Similarity=0.430 Sum_probs=105.6
Q ss_pred CcccCCCCCcchHHHHHHHHHHHHHHHHhC-CCcccChhHhh----------------hccC------------CCCCCC
Q 043774 143 TPVKDQGSCGSCWSFSTTGAIEGINALVTG-DLISLSEQELV----------------DCDT------------TSYGCD 193 (485)
Q Consensus 143 tpVkdQg~CGsCwAfA~~~~lE~~~~i~~~-~~~~LS~Q~l~----------------dC~~------------~~~gC~ 193 (485)
.||.||.+.|.||.||+..+++..+..+.+ +.+.||+.+|. +... .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 389999999999999999999999888766 67999999875 2211 123468
Q ss_pred CCchHHHHHHHHHcCCcCCCCccccCCC---------------------------CC-----------------------
Q 043774 194 GGYMDYAFEWVINNGGIDTESDYPYTGV---------------------------DG----------------------- 223 (485)
Q Consensus 194 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~~----------------------- 223 (485)
||....+...+.++ ||++.+.||-+.. .+
T Consensus 136 GGqw~~~~nli~KY-GvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIKKY-GVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHHHH----BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHc-CcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877665 9999999986410 00
Q ss_pred ---CccCC------ccCc---------------------------------------ceEEec-----------ceeecC
Q 043774 224 ---TCNIT------KEET---------------------------------------KVVSID-----------GYKDVE 244 (485)
Q Consensus 224 ---~C~~~------~~~~---------------------------------------~~~~i~-----------~y~~v~ 244 (485)
.+... .... +.+.+. .|.+++
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 00000 0000 001000 112222
Q ss_pred CCHHHHH----HHHHcC-CeEEEEeccCccccccCCCeeeCCCCC-------------------CCCccCeEEEEEEee-
Q 043774 245 PSDSALL----CAAVQQ-PISVGMVGSASDFQLYTSGIYNGDCSN-------------------DPYYIDHAVLIVGYG- 299 (485)
Q Consensus 245 ~~~~~l~----~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~~-------------------~~~~~~HaV~iVGyg- 299 (485)
.+.|+ ++|..| ||-.+-++. . +...+.||.+...-. .....+|||+|||.+
T Consensus 295 --id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~ 370 (438)
T PF03051_consen 295 --IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDL 370 (438)
T ss_dssp --HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE
T ss_pred --HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEe
Confidence 34444 445566 999999995 3 345578987532210 112358999999999
Q ss_pred ecCCe-eEEEEEcCCCCCCCCCceEEEEeC
Q 043774 300 SENGE-DYWIVKNSWGTSWGIDGYFYITRD 328 (485)
Q Consensus 300 ~~~g~-~yWivkNSWG~~WGe~GY~ri~r~ 328 (485)
|++|+ .+|+|+||||+..|.+||+.|+.+
T Consensus 371 D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 371 DEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp -TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred ccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 46776 699999999999999999999965
No 24
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.47 E-value=5.8e-14 Score=106.21 Aligned_cols=56 Identities=48% Similarity=0.864 Sum_probs=52.8
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcC-CCCCeEEecccCCCCCHHH
Q 043774 42 FQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKN-NPGGHVVGLNKFADMSNEE 97 (485)
Q Consensus 42 F~~f~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~-~~~s~~~g~N~FsDlt~eE 97 (485)
|++|+.+|+|.|.+.+|..+|+.+|++|++.|+.||. ++.+|++|+|+|+|||.+|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 6889999999999999999999999999999999997 5589999999999999886
No 25
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.76 E-value=2.4e-08 Score=98.84 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=54.9
Q ss_pred CHHHHHHHHH----cC-CeEEEEeccCccccccCCCeeeCCC-------CC------------CCCccCeEEEEEEee-e
Q 043774 246 SDSALLCAAV----QQ-PISVGMVGSASDFQLYTSGIYNGDC-------SN------------DPYYIDHAVLIVGYG-S 300 (485)
Q Consensus 246 ~~~~l~~al~----~g-PV~v~i~~~~~~f~~Y~sGIy~~~c-------~~------------~~~~~~HaV~iVGyg-~ 300 (485)
+.+.++++.. .| +|=.+-++. .+..-+.||.+-+- +. ......|||+|.|.+ |
T Consensus 296 ~me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d 373 (444)
T COG3579 296 DMERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLD 373 (444)
T ss_pred cHHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccc
Confidence 3455655432 35 888887774 56667778764210 00 001246999999999 5
Q ss_pred cCCe-eEEEEEcCCCCCCCCCceEEEEe
Q 043774 301 ENGE-DYWIVKNSWGTSWGIDGYFYITR 327 (485)
Q Consensus 301 ~~g~-~yWivkNSWG~~WGe~GY~ri~r 327 (485)
++|. --|.|.||||..=|.+|||-++-
T Consensus 374 ~~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 374 ETGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred cCCCceeeEeecccccccCCCceEeehH
Confidence 5554 47999999999999999999874
No 26
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00065 Score=67.81 Aligned_cols=75 Identities=24% Similarity=0.320 Sum_probs=54.5
Q ss_pred CcccCCCCCcchHHHHHHHHHHHHHHHHhC-CCcccChhHhhh--------------------ccC----------CCCC
Q 043774 143 TPVKDQGSCGSCWSFSTTGAIEGINALVTG-DLISLSEQELVD--------------------CDT----------TSYG 191 (485)
Q Consensus 143 tpVkdQg~CGsCwAfA~~~~lE~~~~i~~~-~~~~LS~Q~l~d--------------------C~~----------~~~g 191 (485)
+||.||..-|-||.|+.+..+.--+..+-+ ..+.||..+|+- |.. .+.-
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 699999999999999999987655544433 357788888753 211 1233
Q ss_pred CCCCchHHHHHHHHHcCCcCCCCcccc
Q 043774 192 CDGGYMDYAFEWVINNGGIDTESDYPY 218 (485)
Q Consensus 192 C~GG~~~~a~~~~~~~~Gi~~e~~yPY 218 (485)
-+||....-...+.++ |+.+.++|+-
T Consensus 143 ~DGGqw~MfvNlVkKY-GviPKkcy~~ 168 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKKY-GVIPKKCYLH 168 (457)
T ss_pred CCCchHHHHHHHHHHh-CCCcHHhccc
Confidence 4789888877777555 9999999874
No 27
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.79 E-value=0.011 Score=51.73 Aligned_cols=57 Identities=25% Similarity=0.412 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHcC-CeEEEEeccCccccccCCCeeeCCCCCCCCccCeEEEEEEeeecCCeeEEEEEcCC
Q 043774 245 PSDSALLCAAVQQ-PISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSW 313 (485)
Q Consensus 245 ~~~~~l~~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 313 (485)
.+.+.|++.|.+| ||.+.+....... .+..+.. ...+|.|+|+||+++. +++|..+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~~------~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYDG------TYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS-----TTEEEEE-------TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcCC------CcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 4668899999986 9999987421111 1112221 1468999999998743 78888877
No 28
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=94.40 E-value=0.025 Score=39.69 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCCCeEEecccCCCCCHHHHHHHHhhcc
Q 043774 70 LEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLKKI 106 (485)
Q Consensus 70 l~~I~~~N~~~~s~~~g~N~FsDlt~eEf~~~~~~~~ 106 (485)
-++|+..|+.+.+|++|.| |.+.+.++++.+ +|..
T Consensus 3 de~I~~IN~~~~tWkAG~N-F~~~~~~~ik~L-lGv~ 37 (41)
T PF08127_consen 3 DEFIDYINSKNTTWKAGRN-FENTSIEYIKRL-LGVL 37 (41)
T ss_dssp HHHHHHHHHCT-SEEE-----SSB-HHHHHHC-S-B-
T ss_pred HHHHHHHHcCCCcccCCCC-CCCCCHHHHHHH-cCCC
Confidence 3678888888899999999 899998888775 4543
No 29
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=93.40 E-value=1.4 Score=40.74 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=64.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHH--------HHhCCCcccChhHhhhccCCCCCCCCCchHHHHHHHHHcCCcCCCCcccc
Q 043774 147 DQGSCGSCWSFSTTGAIEGINA--------LVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPY 218 (485)
Q Consensus 147 dQg~CGsCwAfA~~~~lE~~~~--------i~~~~~~~LS~Q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY 218 (485)
.||.=+=|-+||.+++|-.... +.+.-...+|+++|.+++. .+...++|.... |....
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~--------~~~~~i~y~ks~-g~~~~----- 83 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL--------TPNQMIKYAKSQ-GRNPQ----- 83 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B---------HHHHHHHHHHT-TEEEE-----
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC--------CHHHHHHHHHHc-Ccchh-----
Confidence 4888899999999998765421 1111235678888877642 345667775433 43210
Q ss_pred CCCCCCccCCccCcceEEecceeecCCCHHHHHHHHHc-CCeEEEEeccCccccccCCCeeeCCCCCCCCccCeEEEEEE
Q 043774 219 TGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQ-QPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVG 297 (485)
Q Consensus 219 ~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVG 297 (485)
+..-..+-+.+++.+.+ .|+.+...... + ++....+|||+|||
T Consensus 84 ---------------------~~n~~~s~~eV~~~~~~nk~i~i~~~~v~-------~--------~~~~~~gHAlavvG 127 (175)
T PF05543_consen 84 ---------------------YNNRMPSFDEVKKLIDNNKGIAILADRVE-------Q--------TNGPHAGHALAVVG 127 (175)
T ss_dssp ---------------------EECS---HHHHHHHHHTT-EEEEEEEETT-------S--------CTTB--EEEEEEEE
T ss_pred ---------------------HhcCCCCHHHHHHHHHcCCCeEEEecccc-------c--------CCCCccceeEEEEe
Confidence 11001245677887775 57776555321 1 11135789999999
Q ss_pred eee-cCCeeEEEEEcCCC
Q 043774 298 YGS-ENGEDYWIVKNSWG 314 (485)
Q Consensus 298 yg~-~~g~~yWivkNSWG 314 (485)
|-. .+|.++.++=|=|-
T Consensus 128 ya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 128 YAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEEETTSEEEEEEE-TT-
T ss_pred eeecCCCCeEEEEeCCcc
Confidence 985 56789999967663
No 30
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=81.89 E-value=3.1 Score=41.97 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHHHHHHHcC-CeEEEEeccCccccccCCCeeeCCCCCCCCccCeEEEEEEeeecCCeeEEEEEcCCCCCCCCCceEEE
Q 043774 247 DSALLCAAVQQ-PISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYI 325 (485)
Q Consensus 247 ~~~l~~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~ri 325 (485)
.+.|+++|.+| ||.|.++.. +..|...-|. ....+|.|+|+||++++ ..|.++- +....+.++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~~------~~~~~H~i~v~G~d~~~-~~~~v~D------~~~~~~~~~ 141 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYYK------KHHADHYIVVYGYDEEE-DVFYVSD------PPSYEPGRL 141 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCccccc------cccCCcEEEEEEEeCCC-CEEEEEc------CCCCcceee
Confidence 45677778887 999998763 3334332221 12468999999999764 4566653 334455666
Q ss_pred EeC
Q 043774 326 TRD 328 (485)
Q Consensus 326 ~r~ 328 (485)
+++
T Consensus 142 ~~~ 144 (317)
T PF14399_consen 142 PYE 144 (317)
T ss_pred cHH
Confidence 654
No 31
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=80.58 E-value=0.8 Score=26.06 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=7.3
Q ss_pred ChhhHHHHHHHHH
Q 043774 1 MGFQLAILFLILA 13 (485)
Q Consensus 1 m~~~~~~~~l~l~ 13 (485)
||++++++.|+++
T Consensus 2 Mk~vIIlvvLLli 14 (19)
T PF13956_consen 2 MKLVIILVVLLLI 14 (19)
T ss_pred ceehHHHHHHHhc
Confidence 6776655555443
No 32
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=74.35 E-value=12 Score=35.96 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHcC-CeEEEEeccCccccc---cCCCeee----CCCCCCCCccCeEEEEEEeeecCCeeEEEEEc
Q 043774 245 PSDSALLCAAVQQ-PISVGMVGSASDFQL---YTSGIYN----GDCSNDPYYIDHAVLIVGYGSENGEDYWIVKN 311 (485)
Q Consensus 245 ~~~~~l~~al~~g-PV~v~i~~~~~~f~~---Y~sGIy~----~~c~~~~~~~~HaV~iVGyg~~~g~~yWivkN 311 (485)
-..++|...|..| |+.|-++.. +.. -+.-.+. .-++.++...+|-|+|+||+.+.+ =++++|
T Consensus 111 vs~~ei~~hl~~g~~aIvLVd~~---~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~--~~~yrd 180 (212)
T PF09778_consen 111 VSIQEIIEHLSSGGPAIVLVDAS---LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATK--EFEYRD 180 (212)
T ss_pred ccHHHHHHHHhCCCcEEEEEccc---cccChhhcccccccccccccCCCCCccEEEEEEEeecCCCC--eEEEeC
Confidence 3567888888875 555555542 211 0222221 112334457799999999986543 244454
No 33
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=73.91 E-value=12 Score=38.04 Aligned_cols=42 Identities=26% Similarity=0.592 Sum_probs=34.2
Q ss_pred ccCeEEEEEEeeecC--CeeEEEEEcCCCCC--CC------------------------CCceEEEEeCC
Q 043774 288 YIDHAVLIVGYGSEN--GEDYWIVKNSWGTS--WG------------------------IDGYFYITRDT 329 (485)
Q Consensus 288 ~~~HaV~iVGyg~~~--g~~yWivkNSWG~~--WG------------------------e~GY~ri~r~~ 329 (485)
..+||-.|+++...+ |.+...|||-||.. || ++|.|||+.+.
T Consensus 234 ~~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~d 303 (315)
T cd00044 234 VKGHAYSVLDVREVQEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFED 303 (315)
T ss_pred ccCcceEEeEEEEEccCceEEEEecCCccCCCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhHH
Confidence 458999999998766 88999999999952 22 58999999874
No 34
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=72.32 E-value=3 Score=48.53 Aligned_cols=23 Identities=48% Similarity=1.071 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 043774 354 PYSPPSEPPPLPSPPPPPPPSPS 376 (485)
Q Consensus 354 ~~~p~~~~~~~~~~~p~p~~~~~ 376 (485)
||||||+|...|++.|||+++++
T Consensus 9 ppppppppg~epps~pppPppPg 31 (2365)
T COG5178 9 PPPPPPPPGFEPPSQPPPPPPPG 31 (2365)
T ss_pred CcccccCCCCCCCCCCCCccCCC
Confidence 34444455555555555554443
No 35
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.11 E-value=17 Score=33.92 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHcC-CeEEEEeccCccccccCCCeeeCCCCCCCCccCeEEEEEEeeecCCeeEEEEEcCCC
Q 043774 245 PSDSALLCAAVQQ-PISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWG 314 (485)
Q Consensus 245 ~~~~~l~~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG 314 (485)
.+..+|+.+|.+| ||.+-... |.. ..-|+|+|+||++. |+..-+.||
T Consensus 121 ksl~~ik~ql~kg~PV~iw~T~----~~~---------------~s~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 121 KSLSDIKGQLLKGRPVVIWVTN----FHS---------------YSIHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred CcHHHHHHHHhcCCcEEEEEec----ccc---------------cceeeeEeeccccc----ceEeccccc
Confidence 5788899988886 88764432 222 12599999999864 456667774
No 36
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=61.10 E-value=22 Score=30.76 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHHHHHcC-CeEEEEeccCccccccCCCeeeCCCCCCCCccCeEEEEEEeeecCCeeEEEEEcCC
Q 043774 250 LLCAAVQQ-PISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSW 313 (485)
Q Consensus 250 l~~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 313 (485)
+++.+..| ||.+.+... . .....+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~----------~-------~~~~~gH~vVv~g~~~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG----------V-------SITPSGHAMVVIGYDR---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC----------c-------ccCCCCeEEEEEEEcC---CCCEEEECCC
Confidence 66777765 998876540 0 0113589999999981 1235566665
No 37
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=58.65 E-value=8 Score=27.23 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCCCCeeceecCC
Q 043774 375 PSPTQCGDFSYCPSGETCCCIFGF 398 (485)
Q Consensus 375 ~~~~~c~~~~~c~~~~tcc~~~~~ 398 (485)
-.++.|.....||.+.+|=....+
T Consensus 14 ~~~~~C~~~~~CP~~y~C~~~~~~ 37 (45)
T PF14625_consen 14 GQPVSCSPDNSCPSGYSCHFSTSG 37 (45)
T ss_pred CCeeECcCCCCCCCcCEeeecCCC
Confidence 355799777889999998443333
No 38
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=55.38 E-value=11 Score=42.46 Aligned_cols=20 Identities=20% Similarity=0.667 Sum_probs=11.8
Q ss_pred cCCCCcccchhhhhccccccc
Q 043774 457 HKLPWTKIEETEKMHQSLQWK 477 (485)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~ 477 (485)
...+|.+| .+.+.++..+|-
T Consensus 627 rr~nW~kI-~p~d~s~~cFWv 646 (1102)
T KOG1924|consen 627 RRFNWSKI-VPRDLSENCFWV 646 (1102)
T ss_pred ccCCcccc-CccccCccceee
Confidence 34577774 445557777774
No 39
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=45.30 E-value=35 Score=30.52 Aligned_cols=19 Identities=37% Similarity=0.922 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCCCeec
Q 043774 375 PSPTQCGDFSYCPSGETCC 393 (485)
Q Consensus 375 ~~~~~c~~~~~c~~~~tcc 393 (485)
+.+.+|.....++.+.+||
T Consensus 55 ~~~~iC~~~~~~~~~~~CC 73 (136)
T PF04885_consen 55 KDPWICSAKGKCSPGPTCC 73 (136)
T ss_pred CCchhhcCCCCCCCCCccc
Confidence 3566888888889999999
No 40
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=45.19 E-value=18 Score=24.26 Aligned_cols=27 Identities=41% Similarity=0.827 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCCeeceecCCCcccccccCcC
Q 043774 376 SPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCP 409 (485)
Q Consensus 376 ~~~~c~~~~~c~~~~tcc~~~~~~~~~~~~~ccp 409 (485)
.+..|.....||++.+|=.. . ...|||
T Consensus 12 ~~~~C~~~~~CP~g~~C~~~--~-----~~~CC~ 38 (38)
T smart00289 12 SPVRCSPNGSCPSGYSCQNS--K-----QGICCP 38 (38)
T ss_pred CCeECCCCCCCCCCCEEecC--C-----CcccCc
Confidence 45688888899999998533 3 466665
No 41
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=43.09 E-value=19 Score=24.57 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=8.2
Q ss_pred ChhhHHHHHHHHHHHh
Q 043774 1 MGFQLAILFLILASAA 16 (485)
Q Consensus 1 m~~~~~~~~l~l~~~~ 16 (485)
||...+.++|+||+++
T Consensus 1 Mk~l~~a~~l~lLal~ 16 (36)
T PF08194_consen 1 MKCLSLAFALLLLALA 16 (36)
T ss_pred CceeHHHHHHHHHHHH
Confidence 8887553333333333
No 42
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=41.38 E-value=31 Score=39.17 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=9.7
Q ss_pred CChHHHHHHHHHHHHHh
Q 043774 33 VSEERVFELFQRWKDKH 49 (485)
Q Consensus 33 ~~~~~~~~~F~~f~~~~ 49 (485)
.++.++..+|++-..+-
T Consensus 83 ls~~e~~~~F~~~~~dm 99 (1102)
T KOG1924|consen 83 LSSNEVLELFELMGEDM 99 (1102)
T ss_pred ccHHHHHHHHHHHhhhc
Confidence 45556666666655443
No 43
>PF11567 PfUIS3: Plasmodium falciparum UIS3 membrane protein; InterPro: IPR021626 UIS3 is a membrane protein essential for sporozoite development in infected hepatocytes. This family is 130-229 of the Plasmodium falciparum UIS3 protein which is compact and has an all alpha-helical structure.PfUIS3(130-229) interacts with lipids, phospholipid lysosomes, the human liver fatty acid-binding protein and with the lipid phosphatidylethanolamine. The interaction with liver fatty acid-binding protein provides the parasite with a method to import essential fatty acids/lipids during rapid growth phases of sporozoites []. ; PDB: 2VWA_C.
Probab=37.95 E-value=22 Score=29.10 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCeEEecccCCCCCHHH
Q 043774 57 EEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEE 97 (485)
Q Consensus 57 ~E~~~R~~iF~~Nl~~I~~~N~~~~s~~~g~N~FsDlt~eE 97 (485)
+--.+||.+|.+|++...+|- |++|+.++
T Consensus 18 DvpiKrfN~F~Dn~rla~qhH------------F~~LSn~Q 46 (101)
T PF11567_consen 18 DVPIKRFNIFMDNARLAAQHH------------FSNLSNEQ 46 (101)
T ss_dssp ---HHHHHHHHHHHHHHHHHH------------HHHS-HHH
T ss_pred cccHHHHHHHHHHHHHHHHHH------------HHhcCcHH
Confidence 445799999999999876664 78888775
No 44
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=35.27 E-value=56 Score=32.70 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=20.2
Q ss_pred ccCeEEEEEEeeecCC----eeEEEEEcCCCC
Q 043774 288 YIDHAVLIVGYGSENG----EDYWIVKNSWGT 315 (485)
Q Consensus 288 ~~~HaV~iVGyg~~~g----~~yWivkNSWG~ 315 (485)
..+||-.|+++...++ ...-.|||-||.
T Consensus 212 ~~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~ 243 (298)
T PF00648_consen 212 VPGHAYAVLDVREVNGNGEGHRLVKLRNPWGS 243 (298)
T ss_dssp BTTS-EEEEEEEEEEETTEEEEEEEEE-TTSS
T ss_pred ccceeEEEEEEEeeccccceeEEEEEcCCCcc
Confidence 4589999999985433 567889999985
No 45
>PF08107 Antimicrobial12: Pleurocidin family; InterPro: IPR012515 This family consists of the pleurocidin family of antimicrobial peptides. Pleurocidins are found in the skin mucous secretions of the winter flounder (Pleuronectes americanus) and these peptides exhibit antimicrobial activity against Escherichia coli. Pleurocidin is predicted to assume an amphipathic alpha-helical conformation similar to other linear antimicrobial peptides and may play a role in innate host defence [].; GO: 0042742 defense response to bacterium; PDB: 1Z64_A 2OJM_A 2JOS_A.
Probab=33.47 E-value=14 Score=25.92 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCc
Q 043774 1 MGFQLAILFLILASAASLPSE 21 (485)
Q Consensus 1 m~~~~~~~~l~l~~~~~~~~~ 21 (485)
||+.+++|.|+++++-+-++|
T Consensus 1 Mk~~a~flvl~lvvlMaePgE 21 (42)
T PF08107_consen 1 MKCTALFLVLFLVVLMAEPGE 21 (42)
T ss_dssp ---------------------
T ss_pred ChhHHHHHHHHHHHHHcCccc
Confidence 899988888888777666555
No 46
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=32.93 E-value=29 Score=32.77 Aligned_cols=15 Identities=27% Similarity=0.518 Sum_probs=8.5
Q ss_pred ChhhHHHHHHHHHHH
Q 043774 1 MGFQLAILFLILASA 15 (485)
Q Consensus 1 m~~~~~~~~l~l~~~ 15 (485)
||+.++||||++++.
T Consensus 1 MKll~~lilli~~~~ 15 (212)
T PF11912_consen 1 MKLLISLILLILLII 15 (212)
T ss_pred CcHHHHHHHHHHHHH
Confidence 898655555444443
No 47
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=30.07 E-value=73 Score=32.48 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=22.5
Q ss_pred ccCeEEEEEEeeecCCee--EEEEEcCCCC
Q 043774 288 YIDHAVLIVGYGSENGED--YWIVKNSWGT 315 (485)
Q Consensus 288 ~~~HaV~iVGyg~~~g~~--yWivkNSWG~ 315 (485)
..+||=.|++...-++.+ -..|||-||.
T Consensus 226 v~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 226 VKGHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred ccCccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 358999999998655555 8999999983
No 48
>PF15240 Pro-rich: Proline-rich
Probab=28.69 E-value=36 Score=31.81 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhcC
Q 043774 5 LAILFLILASAASL 18 (485)
Q Consensus 5 ~~~~~l~l~~~~~~ 18 (485)
||||.++||||++|
T Consensus 3 lVLLSvALLALSSA 16 (179)
T PF15240_consen 3 LVLLSVALLALSSA 16 (179)
T ss_pred hHHHHHHHHHhhhc
Confidence 44455666666665
No 49
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=28.62 E-value=1.2e+02 Score=29.08 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Q 043774 56 TEEAERRFRNFKNNLEYVVEKKN 78 (485)
Q Consensus 56 ~~E~~~R~~iF~~Nl~~I~~~N~ 78 (485)
......-+..|..|++.+--.|.
T Consensus 48 ~~~~~~l~~~~~~~i~~~WG~~e 70 (204)
T PF11873_consen 48 TNGLDILMGQFSKNIEKIWGKNE 70 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455667788888888776554
No 50
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=28.20 E-value=4.8e+02 Score=24.07 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=26.2
Q ss_pred CHHHHHHHHHc-CCeEEEEeccCccccccCCCeeeCCCCCCCCccCeEEEEEEeeec
Q 043774 246 SDSALLCAAVQ-QPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSE 301 (485)
Q Consensus 246 ~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~ 301 (485)
..+.+..+|.+ ||+-|++... +. ....|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P----------------~~--~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP----------------GD--SWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC----------------CC--cceeeEEEEEeecCC
Confidence 45778888875 9999886541 11 134699999998744
No 51
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.97 E-value=88 Score=26.56 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=8.9
Q ss_pred ChhhHHHHHHHHHHH
Q 043774 1 MGFQLAILFLILASA 15 (485)
Q Consensus 1 m~~~~~~~~l~l~~~ 15 (485)
||..+++++++++.+
T Consensus 1 m~~~~~vll~ll~~l 15 (105)
T PRK00888 1 MRLLTLLLLALLVWL 15 (105)
T ss_pred CcHHHHHHHHHHHHH
Confidence 777765555554443
No 52
>COG5510 Predicted small secreted protein [Function unknown]
Probab=25.79 E-value=39 Score=24.00 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=6.7
Q ss_pred ChhhHHHHHHHHH
Q 043774 1 MGFQLAILFLILA 13 (485)
Q Consensus 1 m~~~~~~~~l~l~ 13 (485)
||..+++++++++
T Consensus 2 mk~t~l~i~~vll 14 (44)
T COG5510 2 MKKTILLIALVLL 14 (44)
T ss_pred chHHHHHHHHHHH
Confidence 6775544444443
No 53
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=25.46 E-value=70 Score=30.13 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=12.2
Q ss_pred ChhhHHHHHHHHHHHhcC
Q 043774 1 MGFQLAILFLILASAASL 18 (485)
Q Consensus 1 m~~~~~~~~l~l~~~~~~ 18 (485)
||+..++++++++.+..+
T Consensus 1 mK~~~~l~~~~~~~l~~~ 18 (200)
T PF07305_consen 1 MKKIAILLLLLLLTLPVS 18 (200)
T ss_pred CchHHHHHHHHHhccccc
Confidence 899877776666555543
No 54
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=24.59 E-value=1e+02 Score=27.15 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHhcC
Q 043774 1 MGFQLAILFLILASAASL 18 (485)
Q Consensus 1 m~~~~~~~~l~l~~~~~~ 18 (485)
||..+|+++|++-+++.+
T Consensus 1 MKK~ll~~~lllss~sfa 18 (126)
T PF09403_consen 1 MKKILLLGMLLLSSISFA 18 (126)
T ss_dssp ------------------
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 888665544443333333
No 55
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=23.53 E-value=1.5e+02 Score=23.00 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=9.5
Q ss_pred ChhhHHHHHHHHHHHhc
Q 043774 1 MGFQLAILFLILASAAS 17 (485)
Q Consensus 1 m~~~~~~~~l~l~~~~~ 17 (485)
|.-.++|.|++.+++.+
T Consensus 1 ms~~viIaL~~avaa~a 17 (66)
T PF10907_consen 1 MSRRVIIALVVAVAAAA 17 (66)
T ss_pred CCcchhHHHHHHHHhhh
Confidence 66666666665544443
No 56
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=22.59 E-value=64 Score=38.38 Aligned_cols=22 Identities=55% Similarity=1.260 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 043774 351 APSPYSPPSEPPPLPSPPPPPP 372 (485)
Q Consensus 351 ~~~~~~p~~~~~~~~~~~p~p~ 372 (485)
.|+|||||.=++|-++++|||+
T Consensus 9 ppppppppg~epps~pppPppP 30 (2365)
T COG5178 9 PPPPPPPPGFEPPSQPPPPPPP 30 (2365)
T ss_pred CcccccCCCCCCCCCCCCccCC
Confidence 3444444443333333333433
No 57
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=2.7e+02 Score=26.34 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=45.9
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHhCCccCCh--------------HHHHHHHHHHHHHHHHH-HHhcCCCCCeEEecc
Q 043774 24 IIGHDFNEFVSEERVFELFQRWKDKHGKAYKHT--------------EEAERRFRNFKNNLEYV-VEKKNNPGGHVVGLN 88 (485)
Q Consensus 24 i~~~~~~~~~~~~~~~~~F~~f~~~~~k~Y~~~--------------~E~~~R~~iF~~Nl~~I-~~~N~~~~s~~~g~N 88 (485)
+|++++.-+....+++++|-+-...| |.+.+- .|+.....-=..|+..| +-+|....+| ..+|
T Consensus 111 fIs~GDafl~~pde~ddLfYeii~mh-knFdn~~S~vlrlstnagq~kdaaskv~~AL~ni~aiiehfnpKiedy-aavn 188 (252)
T KOG4654|consen 111 FISNGDAFLIRPDELDDLFYEIIHMH-KNFDNFSSKVLRLSTNAGQIKDAASKVLGALNNILAIIEHFNPKIEDY-AAVN 188 (252)
T ss_pred HHhCCCeeeeCchHHHHHHHHHHHHh-cchhhHHHHHHHhccccccCchHHHHHHHHHHHHHHHHHhcCchhhhH-HHhc
Confidence 34566666677778888887766555 333221 23332333334565554 4456655556 6789
Q ss_pred cCCCCCHHHHHHH
Q 043774 89 KFADMSNEEFREI 101 (485)
Q Consensus 89 ~FsDlt~eEf~~~ 101 (485)
+...+|.+|..+.
T Consensus 189 hi~qlsadeV~eV 201 (252)
T KOG4654|consen 189 HIPQLSADEVEEV 201 (252)
T ss_pred ccccccHHHHHHH
Confidence 9999999987664
No 58
>PRK09810 entericidin A; Provisional
Probab=20.95 E-value=84 Score=22.12 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=7.5
Q ss_pred ChhhHHHHHHHHHHH
Q 043774 1 MGFQLAILFLILASA 15 (485)
Q Consensus 1 m~~~~~~~~l~l~~~ 15 (485)
||..+++++++++++
T Consensus 2 Mkk~~~l~~~~~~~L 16 (41)
T PRK09810 2 MKRLIVLVLLASTLL 16 (41)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666655444444333
No 59
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=20.41 E-value=34 Score=26.72 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=0.0
Q ss_pred Chhh-HHHHHHHHHH
Q 043774 1 MGFQ-LAILFLILAS 14 (485)
Q Consensus 1 m~~~-~~~~~l~l~~ 14 (485)
||+. |+|++||||.
T Consensus 1 mKLt~vliVavLllt 15 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLT 15 (75)
T ss_dssp ---------------
T ss_pred CCcchHHHHHHHHHH
Confidence 8887 4555554444
Done!