Query 043775
Match_columns 554
No_of_seqs 254 out of 1015
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 14:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 2E-107 6E-112 921.2 48.0 527 9-554 1-756 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 4E-106 1E-110 909.9 48.4 528 7-554 57-755 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 5.8E-69 2E-73 560.7 24.4 294 257-554 3-378 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 1.6E-48 5.5E-53 411.2 25.0 258 6-273 27-397 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 9.7E-46 3.3E-50 385.0 19.5 244 4-254 8-364 (364)
6 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 1.7E-44 5.7E-49 374.4 25.8 241 5-255 6-353 (354)
7 2wzk_A Cullin-5, CUL-5; UBL co 100.0 3.1E-44 1.1E-48 377.0 19.9 243 3-255 9-381 (391)
8 3tdu_C Cullin-1, CUL-1; E2:E3, 99.8 8.2E-21 2.8E-25 149.4 0.8 56 499-554 18-73 (77)
9 1iuy_A Cullin-3 homologue; win 99.8 8.3E-20 2.9E-24 148.8 2.4 56 499-554 33-88 (92)
10 3o2p_E Cell division control p 99.8 8.6E-20 2.9E-24 147.1 2.3 55 499-554 30-84 (88)
11 2do7_A Cullin-4B, CUL-4B; heli 99.7 2.6E-18 8.9E-23 142.0 2.4 54 499-554 38-91 (101)
12 2jt1_A PEFI protein; solution 91.5 0.24 8.2E-06 38.4 4.8 50 427-478 8-63 (77)
13 3cuo_A Uncharacterized HTH-typ 89.9 0.49 1.7E-05 37.8 5.6 51 422-474 23-73 (99)
14 2dk5_A DNA-directed RNA polyme 88.4 0.5 1.7E-05 37.9 4.5 53 418-472 15-69 (91)
15 1sfx_A Conserved hypothetical 87.6 0.61 2.1E-05 37.7 4.8 50 421-472 18-67 (109)
16 3tgn_A ADC operon repressor AD 87.3 0.85 2.9E-05 39.1 5.8 52 419-473 34-85 (146)
17 1y0u_A Arsenical resistance op 87.3 1.2 4.2E-05 35.5 6.3 56 422-489 30-85 (96)
18 3lmm_A Uncharacterized protein 87.3 0.47 1.6E-05 51.5 4.9 116 422-553 429-569 (583)
19 3g3z_A NMB1585, transcriptiona 87.3 0.8 2.7E-05 39.3 5.6 51 421-473 29-79 (145)
20 3hsr_A HTH-type transcriptiona 87.2 0.66 2.3E-05 39.8 5.0 52 420-473 33-84 (140)
21 2htj_A P fimbrial regulatory p 87.1 1.7 5.9E-05 33.5 6.9 44 427-472 4-47 (81)
22 3jth_A Transcription activator 86.9 1.1 3.9E-05 35.8 6.0 60 422-488 22-81 (98)
23 2d1h_A ST1889, 109AA long hypo 86.0 1.2 4.1E-05 35.9 5.7 51 421-473 19-70 (109)
24 1qgp_A Protein (double strande 85.9 0.81 2.8E-05 35.3 4.3 47 425-473 16-65 (77)
25 3ech_A MEXR, multidrug resista 85.6 0.67 2.3E-05 39.7 4.1 52 420-473 34-85 (142)
26 3nrv_A Putative transcriptiona 85.6 1 3.5E-05 38.8 5.3 52 420-473 37-88 (148)
27 3r0a_A Putative transcriptiona 85.4 0.96 3.3E-05 38.2 4.9 52 419-472 22-75 (123)
28 3cdh_A Transcriptional regulat 85.4 1.4 4.8E-05 38.2 6.2 51 421-473 41-91 (155)
29 3oop_A LIN2960 protein; protei 85.3 0.73 2.5E-05 39.5 4.2 51 421-473 35-85 (143)
30 4hbl_A Transcriptional regulat 85.0 0.91 3.1E-05 39.3 4.7 51 421-473 39-89 (149)
31 2qww_A Transcriptional regulat 84.7 1.2 4.2E-05 38.5 5.5 49 421-471 39-87 (154)
32 2fbh_A Transcriptional regulat 84.6 1.2 4E-05 38.1 5.3 51 421-473 35-86 (146)
33 1xn7_A Hypothetical protein YH 84.6 1.3 4.5E-05 34.3 4.9 43 428-472 7-49 (78)
34 3bpv_A Transcriptional regulat 84.4 0.94 3.2E-05 38.3 4.5 51 421-473 27-77 (138)
35 2frh_A SARA, staphylococcal ac 84.3 0.91 3.1E-05 38.4 4.3 52 420-473 34-87 (127)
36 2fu4_A Ferric uptake regulatio 84.3 1.4 4.6E-05 34.1 5.0 52 420-473 14-72 (83)
37 2gxg_A 146AA long hypothetical 84.3 1.5 5.3E-05 37.4 5.9 50 421-473 35-84 (146)
38 3eco_A MEPR; mutlidrug efflux 84.2 1.1 3.8E-05 38.0 4.9 51 421-473 29-81 (139)
39 3bj6_A Transcriptional regulat 84.1 1.4 4.8E-05 38.0 5.6 51 421-473 38-88 (152)
40 1jgs_A Multiple antibiotic res 83.4 1.2 4E-05 37.8 4.7 51 421-473 32-82 (138)
41 3bro_A Transcriptional regulat 83.1 1.6 5.4E-05 37.0 5.4 51 421-473 32-84 (141)
42 1xmk_A Double-stranded RNA-spe 83.1 1.6 5.4E-05 33.9 4.8 51 423-475 11-62 (79)
43 2fa5_A Transcriptional regulat 82.8 1.5 5.2E-05 38.3 5.3 51 421-473 47-97 (162)
44 1u2w_A CADC repressor, cadmium 82.6 1.8 6E-05 36.4 5.4 61 422-488 41-101 (122)
45 3e6m_A MARR family transcripti 82.6 1.2 4E-05 39.1 4.5 51 421-473 51-101 (161)
46 3k0l_A Repressor protein; heli 82.6 1.1 3.7E-05 39.4 4.3 51 421-473 44-94 (162)
47 1qbj_A Protein (double-strande 82.4 1.8 6.3E-05 33.7 4.9 47 425-473 12-61 (81)
48 2pex_A Transcriptional regulat 82.3 1.5 5.2E-05 37.9 5.1 51 421-473 45-95 (153)
49 3pqk_A Biofilm growth-associat 82.3 3 0.0001 33.5 6.6 60 423-489 23-82 (102)
50 3bdd_A Regulatory protein MARR 82.1 1.4 4.9E-05 37.3 4.7 52 420-473 28-79 (142)
51 1tbx_A ORF F-93, hypothetical 82.1 1 3.4E-05 36.1 3.5 52 420-473 5-60 (99)
52 2nnn_A Probable transcriptiona 81.9 1.1 3.9E-05 37.9 4.0 51 420-472 35-85 (140)
53 1oyi_A Double-stranded RNA-bin 81.7 2 6.7E-05 33.6 4.8 44 427-473 21-64 (82)
54 3deu_A Transcriptional regulat 81.5 1.7 5.7E-05 38.6 5.1 76 372-473 26-102 (166)
55 3cjn_A Transcriptional regulat 81.4 1.5 5.3E-05 38.3 4.8 51 421-473 50-100 (162)
56 2hr3_A Probable transcriptiona 81.4 1.7 5.7E-05 37.2 5.0 52 420-473 32-84 (147)
57 2nyx_A Probable transcriptiona 81.4 1.3 4.4E-05 39.3 4.3 52 420-473 42-93 (168)
58 2a61_A Transcriptional regulat 81.2 1.2 4.1E-05 38.0 3.9 51 421-473 31-81 (145)
59 3bja_A Transcriptional regulat 81.1 0.92 3.2E-05 38.4 3.1 51 421-473 31-81 (139)
60 1ku9_A Hypothetical protein MJ 81.1 2.5 8.5E-05 36.1 6.0 51 421-473 24-75 (152)
61 1bby_A RAP30; average structur 81.0 3.3 0.00011 31.1 5.7 57 425-491 10-66 (69)
62 1lj9_A Transcriptional regulat 81.0 1.3 4.6E-05 37.7 4.2 51 421-473 27-77 (144)
63 1p6r_A Penicillinase repressor 80.8 1.6 5.4E-05 33.7 4.1 53 420-474 6-62 (82)
64 2k02_A Ferrous iron transport 80.8 1.8 6.3E-05 34.2 4.4 43 428-472 7-49 (87)
65 2heo_A Z-DNA binding protein 1 80.7 1.2 4.1E-05 33.3 3.2 46 424-471 11-57 (67)
66 2rdp_A Putative transcriptiona 80.6 1.6 5.6E-05 37.5 4.6 51 421-473 40-90 (150)
67 1s3j_A YUSO protein; structura 80.3 1.4 4.7E-05 38.2 4.0 52 420-473 34-85 (155)
68 2eth_A Transcriptional regulat 80.3 1.7 6E-05 37.6 4.7 51 421-473 42-92 (154)
69 3s2w_A Transcriptional regulat 80.2 1.2 3.9E-05 39.1 3.5 51 421-473 48-98 (159)
70 2bv6_A MGRA, HTH-type transcri 80.1 1.1 3.8E-05 38.2 3.3 51 421-473 35-85 (142)
71 2vn2_A DNAD, chromosome replic 80.1 2.2 7.5E-05 36.3 5.1 54 418-473 27-85 (128)
72 2v79_A DNA replication protein 80.0 1.7 5.7E-05 37.5 4.3 53 417-471 26-83 (135)
73 2fbi_A Probable transcriptiona 80.0 1.2 4.2E-05 37.8 3.5 51 421-473 34-84 (142)
74 2oqg_A Possible transcriptiona 79.8 1.6 5.5E-05 35.8 4.1 49 422-473 20-68 (114)
75 1z91_A Organic hydroperoxide r 79.7 1.5 5.1E-05 37.5 4.1 51 421-473 38-88 (147)
76 1r1u_A CZRA, repressor protein 79.0 2.2 7.5E-05 34.7 4.6 49 422-473 25-73 (106)
77 1ub9_A Hypothetical protein PH 78.9 1.9 6.6E-05 34.2 4.2 49 422-472 15-63 (100)
78 3f3x_A Transcriptional regulat 78.8 1.6 5.6E-05 37.2 4.0 51 420-473 34-84 (144)
79 3fm5_A Transcriptional regulat 78.7 2.2 7.4E-05 36.8 4.8 51 421-473 37-88 (150)
80 4b8x_A SCO5413, possible MARR- 78.1 2 6.7E-05 37.3 4.3 51 421-473 33-85 (147)
81 3jw4_A Transcriptional regulat 78.1 1 3.6E-05 38.8 2.5 51 421-473 39-91 (148)
82 2e1c_A Putative HTH-type trans 77.7 2.4 8.1E-05 38.0 4.8 66 401-471 8-73 (171)
83 3lwf_A LIN1550 protein, putati 77.4 6.5 0.00022 34.7 7.5 46 425-472 31-77 (159)
84 4aik_A Transcriptional regulat 77.3 3.1 0.00011 36.2 5.4 51 421-473 29-80 (151)
85 2fxa_A Protease production reg 76.8 2.2 7.4E-05 39.5 4.4 51 421-473 46-96 (207)
86 1sfu_A 34L protein; protein/Z- 76.6 3.3 0.00011 31.7 4.5 44 428-473 20-63 (75)
87 3nqo_A MARR-family transcripti 76.6 2.4 8.2E-05 38.4 4.6 51 421-473 39-91 (189)
88 2kko_A Possible transcriptiona 76.1 1.7 6E-05 35.6 3.2 46 425-473 27-72 (108)
89 3t8r_A Staphylococcus aureus C 75.9 6.7 0.00023 33.9 7.1 45 426-472 16-61 (143)
90 2w25_A Probable transcriptiona 75.6 3.7 0.00013 35.6 5.4 49 421-471 5-53 (150)
91 3kp7_A Transcriptional regulat 75.5 1.7 5.9E-05 37.5 3.2 49 420-471 35-83 (151)
92 1bja_A Transcription regulator 75.5 3.5 0.00012 33.1 4.6 50 419-470 12-62 (95)
93 3boq_A Transcriptional regulat 75.4 1.7 5.7E-05 37.9 3.1 51 421-473 45-96 (160)
94 2xub_A DNA-directed RNA polyme 75.3 3 0.0001 44.6 5.6 109 434-549 30-162 (534)
95 2pn6_A ST1022, 150AA long hypo 75.1 4 0.00014 35.3 5.5 48 422-471 2-49 (150)
96 2wte_A CSA3; antiviral protein 74.2 3 0.0001 39.7 4.8 50 421-472 150-199 (244)
97 2obp_A Putative DNA-binding pr 73.2 3.8 0.00013 33.0 4.4 52 420-473 13-70 (96)
98 3k69_A Putative transcription 72.9 4.1 0.00014 36.1 5.0 46 425-472 16-61 (162)
99 2cfx_A HTH-type transcriptiona 72.8 4.9 0.00017 34.6 5.5 49 421-471 3-51 (144)
100 2lkp_A Transcriptional regulat 72.4 4.1 0.00014 33.7 4.7 47 423-472 32-78 (119)
101 2xrn_A HTH-type transcriptiona 71.3 4.2 0.00014 38.5 5.1 57 426-490 9-66 (241)
102 2cg4_A Regulatory protein ASNC 70.8 5.3 0.00018 34.6 5.3 49 421-471 6-54 (152)
103 2y75_A HTH-type transcriptiona 70.6 11 0.00037 31.6 7.0 36 435-472 24-59 (129)
104 2p5k_A Arginine repressor; DNA 70.6 6.5 0.00022 28.3 4.9 37 425-461 7-48 (64)
105 1sd4_A Penicillinase repressor 70.4 3.3 0.00011 34.5 3.7 52 420-473 7-62 (126)
106 2dbb_A Putative HTH-type trans 70.3 5.7 0.00019 34.4 5.3 49 421-471 7-55 (151)
107 1okr_A MECI, methicillin resis 70.3 2.5 8.6E-05 35.1 2.8 52 420-473 7-62 (123)
108 3r4k_A Transcriptional regulat 70.3 3.8 0.00013 39.3 4.5 57 426-490 9-66 (260)
109 1i1g_A Transcriptional regulat 70.2 3.9 0.00013 34.9 4.2 49 422-472 3-51 (141)
110 2g9w_A Conserved hypothetical 69.9 6.4 0.00022 33.6 5.5 51 421-473 7-62 (138)
111 1ylf_A RRF2 family protein; st 69.8 5.8 0.0002 34.5 5.3 46 425-472 18-63 (149)
112 1fse_A GERE; helix-turn-helix 69.5 8.3 0.00028 28.5 5.4 40 421-462 12-51 (74)
113 2jsc_A Transcriptional regulat 69.1 5.4 0.00018 33.1 4.7 49 422-473 20-68 (118)
114 2ia0_A Putative HTH-type trans 69.0 5.9 0.0002 35.3 5.2 51 419-471 13-63 (171)
115 2v79_A DNA replication protein 68.8 3.6 0.00012 35.4 3.5 30 517-546 54-83 (135)
116 2cyy_A Putative HTH-type trans 68.1 5.8 0.0002 34.4 4.9 49 421-471 5-53 (151)
117 2p5v_A Transcriptional regulat 67.8 7 0.00024 34.3 5.4 49 421-471 8-56 (162)
118 2yu3_A DNA-directed RNA polyme 67.8 11 0.00037 30.2 5.9 52 419-472 33-86 (95)
119 1r1t_A Transcriptional repress 67.3 7.8 0.00027 32.4 5.3 48 423-473 46-93 (122)
120 1xd7_A YWNA; structural genomi 67.1 8.5 0.00029 33.2 5.7 44 425-472 13-56 (145)
121 3u2r_A Regulatory protein MARR 67.1 2.6 8.8E-05 37.1 2.4 51 421-473 44-96 (168)
122 3mq0_A Transcriptional repress 67.1 5.3 0.00018 38.7 4.8 46 426-473 33-79 (275)
123 1je8_A Nitrate/nitrite respons 66.9 9.2 0.00031 29.4 5.3 40 421-462 22-61 (82)
124 1q1h_A TFE, transcription fact 66.2 7.1 0.00024 31.7 4.8 40 431-472 27-66 (110)
125 2zkz_A Transcriptional repress 65.9 5.5 0.00019 31.9 3.9 48 422-472 26-73 (99)
126 1xn7_A Hypothetical protein YH 65.4 5.5 0.00019 30.7 3.6 29 519-547 21-49 (78)
127 2l02_A Uncharacterized protein 65.4 16 0.00054 28.3 6.1 37 427-463 12-48 (82)
128 3ulq_B Transcriptional regulat 65.3 9.7 0.00033 30.0 5.2 43 418-462 27-69 (90)
129 2pg4_A Uncharacterized protein 64.9 6.1 0.00021 31.2 4.0 45 425-471 17-63 (95)
130 4fx0_A Probable transcriptiona 63.9 8.7 0.0003 33.1 5.2 48 421-470 31-83 (148)
131 3f6o_A Probable transcriptiona 63.7 6.1 0.00021 32.7 4.0 59 423-488 18-76 (118)
132 1p4x_A Staphylococcal accessor 63.7 7.4 0.00025 37.1 5.0 52 420-473 155-208 (250)
133 1x3u_A Transcriptional regulat 61.9 12 0.00042 28.0 5.2 40 421-462 17-56 (79)
134 2k4b_A Transcriptional regulat 61.5 2.1 7.1E-05 34.7 0.5 54 420-475 32-89 (99)
135 3c57_A Two component transcrip 61.0 11 0.00037 29.9 4.8 41 420-462 27-67 (95)
136 1hsj_A Fusion protein consisti 60.7 6.7 0.00023 40.9 4.5 53 419-473 400-454 (487)
137 2vn2_A DNAD, chromosome replic 60.5 4.8 0.00017 34.1 2.8 30 519-548 56-85 (128)
138 2o0y_A Transcriptional regulat 59.7 8.2 0.00028 36.9 4.6 45 427-473 27-72 (260)
139 2p7v_B Sigma-70, RNA polymeras 59.0 14 0.00049 26.9 4.9 41 421-461 6-49 (68)
140 1mkm_A ICLR transcriptional re 58.7 10 0.00036 35.8 5.1 45 426-472 11-56 (249)
141 1p4x_A Staphylococcal accessor 57.7 6.1 0.00021 37.7 3.2 51 420-472 31-83 (250)
142 3f6v_A Possible transcriptiona 56.8 8.3 0.00028 33.7 3.7 49 422-473 57-105 (151)
143 3i4p_A Transcriptional regulat 56.8 15 0.00052 32.1 5.5 45 425-471 5-49 (162)
144 3df8_A Possible HXLR family tr 56.1 16 0.00055 29.8 5.2 47 424-473 28-77 (111)
145 1on2_A Transcriptional regulat 55.8 13 0.00044 31.5 4.8 44 428-473 13-56 (142)
146 2qvo_A Uncharacterized protein 55.8 7.8 0.00027 30.6 3.1 47 421-469 10-60 (95)
147 2k02_A Ferrous iron transport 55.6 5.7 0.00019 31.3 2.1 30 519-548 21-50 (87)
148 2x4h_A Hypothetical protein SS 55.2 17 0.00058 30.5 5.4 52 420-473 10-65 (139)
149 2ia2_A Putative transcriptiona 55.0 15 0.00051 35.1 5.6 55 426-490 24-79 (265)
150 2hzt_A Putative HTH-type trans 55.0 18 0.00062 29.1 5.3 46 425-473 16-62 (107)
151 1z7u_A Hypothetical protein EF 54.6 11 0.00038 30.8 3.9 47 424-473 23-70 (112)
152 2g7u_A Transcriptional regulat 54.6 17 0.00058 34.5 5.9 56 425-490 16-72 (257)
153 2fbk_A Transcriptional regulat 54.3 4.2 0.00014 36.3 1.4 51 421-473 67-120 (181)
154 3b73_A PHIH1 repressor-like pr 53.6 13 0.00046 30.6 4.2 50 421-472 11-62 (111)
155 3t72_q RNA polymerase sigma fa 53.5 17 0.00059 29.2 4.8 37 422-458 21-60 (99)
156 2qlz_A Transcription factor PF 52.9 13 0.00046 34.9 4.7 45 426-473 168-212 (232)
157 2p4w_A Transcriptional regulat 52.7 18 0.00062 33.2 5.4 48 422-472 14-61 (202)
158 1tc3_C Protein (TC3 transposas 52.6 23 0.00079 23.1 4.8 34 426-461 12-45 (51)
159 2jpc_A SSRB; DNA binding prote 52.4 14 0.00048 26.1 3.8 34 427-462 5-38 (61)
160 1uly_A Hypothetical protein PH 52.2 22 0.00076 32.2 6.0 49 421-472 18-66 (192)
161 2rnj_A Response regulator prot 50.9 11 0.00038 29.4 3.3 40 421-462 30-69 (91)
162 4a5n_A Uncharacterized HTH-typ 50.6 22 0.00075 30.2 5.3 46 425-473 28-74 (131)
163 2x48_A CAG38821; archeal virus 49.7 44 0.0015 22.8 6.1 24 436-459 30-53 (55)
164 3to7_A Histone acetyltransfera 49.2 15 0.00053 35.1 4.4 36 426-461 196-232 (276)
165 1tty_A Sigma-A, RNA polymerase 49.2 25 0.00086 27.1 5.1 39 422-460 20-61 (87)
166 2f2e_A PA1607; transcription f 48.6 24 0.00084 30.3 5.4 46 425-473 26-71 (146)
167 2fsw_A PG_0823 protein; alpha- 48.2 20 0.00067 28.9 4.5 45 426-473 28-73 (107)
168 1ku3_A Sigma factor SIGA; heli 47.8 27 0.00092 25.8 4.9 39 422-460 12-53 (73)
169 2l01_A Uncharacterized protein 47.0 26 0.00087 26.8 4.4 37 427-463 14-51 (77)
170 1yyv_A Putative transcriptiona 46.6 26 0.00088 29.5 5.1 49 422-473 34-83 (131)
171 1p4w_A RCSB; solution structur 45.3 26 0.00088 28.1 4.6 40 421-462 35-74 (99)
172 3hug_A RNA polymerase sigma fa 43.8 33 0.0011 26.6 5.1 39 421-461 38-77 (92)
173 2k4b_A Transcriptional regulat 42.2 13 0.00043 30.0 2.3 43 504-550 47-89 (99)
174 2o8x_A Probable RNA polymerase 42.1 41 0.0014 24.1 5.1 39 421-461 16-55 (70)
175 4a0z_A Transcription factor FA 41.7 28 0.00096 31.5 4.8 39 424-462 13-51 (190)
176 2jt1_A PEFI protein; solution 41.1 12 0.00041 28.6 1.9 28 524-551 34-61 (77)
177 2ozu_A Histone acetyltransfera 40.7 26 0.00089 33.7 4.5 29 434-462 211-239 (284)
178 2frh_A SARA, staphylococcal ac 39.7 14 0.00048 30.7 2.3 30 523-552 62-93 (127)
179 2ou2_A Histone acetyltransfera 39.2 24 0.00084 33.9 4.1 26 437-462 212-237 (280)
180 2pq8_A Probable histone acetyl 37.5 19 0.00065 34.6 3.0 36 427-462 197-233 (278)
181 3cuq_B Vacuolar protein-sortin 36.2 75 0.0026 29.4 6.9 83 372-472 114-201 (218)
182 1qgp_A Protein (double strande 36.1 12 0.00041 28.6 1.1 29 524-552 41-69 (77)
183 1p6r_A Penicillinase repressor 35.9 18 0.00061 27.5 2.2 43 504-550 21-63 (82)
184 2lnb_A Z-DNA-binding protein 1 35.5 49 0.0017 25.3 4.4 36 427-462 23-59 (80)
185 1mzb_A Ferric uptake regulatio 35.0 51 0.0017 27.8 5.2 63 420-487 15-84 (136)
186 3kp7_A Transcriptional regulat 35.0 12 0.00039 32.0 1.0 42 503-552 48-93 (151)
187 2fe3_A Peroxide operon regulat 34.9 52 0.0018 28.1 5.3 64 420-488 19-88 (145)
188 2pjp_A Selenocysteine-specific 34.5 18 0.00062 30.0 2.1 105 428-550 12-116 (121)
189 1r7j_A Conserved hypothetical 34.1 58 0.002 25.7 5.0 43 426-472 11-53 (95)
190 2b0l_A GTP-sensing transcripti 33.5 29 0.00098 27.9 3.1 44 428-473 33-77 (102)
191 3mzy_A RNA polymerase sigma-H 33.4 44 0.0015 28.3 4.6 38 421-460 110-147 (164)
192 3k2z_A LEXA repressor; winged 32.1 57 0.002 29.3 5.4 51 421-473 3-58 (196)
193 2h09_A Transcriptional regulat 31.9 49 0.0017 28.2 4.7 41 431-473 48-88 (155)
194 3hrs_A Metalloregulator SCAR; 31.7 49 0.0017 30.3 4.9 45 427-473 10-54 (214)
195 1sd4_A Penicillinase repressor 31.6 29 0.00099 28.4 3.0 26 525-550 39-64 (126)
196 2dk5_A DNA-directed RNA polyme 31.5 30 0.001 27.3 2.8 27 520-546 42-68 (91)
197 1v4r_A Transcriptional repress 31.4 19 0.00065 28.7 1.7 41 431-473 28-69 (102)
198 2o03_A Probable zinc uptake re 31.4 68 0.0023 26.7 5.4 50 421-472 9-64 (131)
199 1z6r_A MLC protein; transcript 31.3 73 0.0025 32.1 6.6 64 426-491 19-85 (406)
200 1bia_A BIRA bifunctional prote 31.2 52 0.0018 32.3 5.3 46 423-470 5-50 (321)
201 1tbx_A ORF F-93, hypothetical 31.1 21 0.00071 28.0 1.9 41 505-549 21-61 (99)
202 2xig_A Ferric uptake regulatio 30.8 65 0.0022 27.7 5.2 52 419-472 23-80 (150)
203 1ku9_A Hypothetical protein MJ 30.8 18 0.00063 30.3 1.6 29 525-553 52-82 (152)
204 2g9w_A Conserved hypothetical 29.6 45 0.0015 28.1 3.9 43 505-551 23-65 (138)
205 3clo_A Transcriptional regulat 28.9 48 0.0017 31.2 4.4 40 420-461 197-236 (258)
206 1j5y_A Transcriptional regulat 28.4 62 0.0021 28.9 4.8 47 425-473 23-71 (187)
207 2r3s_A Uncharacterized protein 27.9 67 0.0023 31.1 5.4 35 436-472 38-72 (335)
208 2w57_A Ferric uptake regulatio 27.9 59 0.002 27.9 4.4 52 419-472 13-71 (150)
209 2qlz_A Transcription factor PF 27.8 27 0.00094 32.7 2.3 46 423-471 12-57 (232)
210 1x19_A CRTF-related protein; m 27.2 92 0.0031 30.6 6.4 43 436-488 63-105 (359)
211 1l3l_A Transcriptional activat 27.2 70 0.0024 29.4 5.2 41 420-462 173-213 (234)
212 3dp7_A SAM-dependent methyltra 26.8 78 0.0027 31.4 5.8 36 435-472 48-83 (363)
213 2qww_A Transcriptional regulat 26.5 32 0.0011 29.1 2.4 22 525-546 66-87 (154)
214 1xsv_A Hypothetical UPF0122 pr 26.1 94 0.0032 25.2 5.2 40 421-461 26-65 (113)
215 1ufm_A COP9 complex subunit 4; 25.6 1.1E+02 0.0038 23.5 5.2 40 424-463 17-56 (84)
216 1tw3_A COMT, carminomycin 4-O- 25.4 74 0.0025 31.2 5.3 36 435-472 50-85 (360)
217 3hsr_A HTH-type transcriptiona 25.1 25 0.00085 29.4 1.4 24 525-548 61-84 (140)
218 1jko_C HIN recombinase, DNA-in 25.1 73 0.0025 20.8 3.7 32 428-461 14-45 (52)
219 3szt_A QCSR, quorum-sensing co 25.0 67 0.0023 29.8 4.6 41 420-462 175-215 (237)
220 2ip2_A Probable phenazine-spec 24.6 1E+02 0.0035 29.8 6.1 35 436-472 40-74 (334)
221 1s7o_A Hypothetical UPF0122 pr 24.2 91 0.0031 25.4 4.7 39 421-461 23-62 (113)
222 1okr_A MECI, methicillin resis 24.2 36 0.0012 27.7 2.2 44 504-551 22-65 (123)
223 2w48_A Sorbitol operon regulat 23.5 90 0.0031 30.3 5.4 39 432-472 16-55 (315)
224 3k6t_A Female germline-specifi 23.5 51 0.0017 23.8 2.5 37 126-162 8-44 (60)
225 3cuq_B Vacuolar protein-sortin 23.4 44 0.0015 31.0 2.9 103 435-552 93-206 (218)
226 3tqn_A Transcriptional regulat 23.2 93 0.0032 25.1 4.6 40 432-473 27-67 (113)
227 2q0o_A Probable transcriptiona 23.2 74 0.0025 29.3 4.5 41 420-462 175-215 (236)
228 1oef_A Apolipoprotein E; glyco 23.0 43 0.0015 19.7 1.8 20 522-541 1-20 (26)
229 3ke2_A Uncharacterized protein 22.9 1.3E+02 0.0044 24.7 5.1 34 429-463 26-59 (117)
230 2pg4_A Uncharacterized protein 22.9 14 0.00046 29.1 -0.7 29 524-552 40-69 (95)
231 3eyy_A Putative iron uptake re 22.6 75 0.0026 27.1 4.1 52 419-472 15-71 (145)
232 1qbj_A Protein (double-strande 22.6 28 0.00095 26.8 1.1 28 524-551 37-64 (81)
233 2lfw_A PHYR sigma-like domain; 22.6 65 0.0022 27.6 3.7 37 422-459 95-131 (157)
234 3oop_A LIN2960 protein; protei 22.4 30 0.001 28.9 1.4 25 524-548 61-85 (143)
235 2htj_A P fimbrial regulatory p 22.4 37 0.0013 25.6 1.8 25 523-547 23-47 (81)
236 3i53_A O-methyltransferase; CO 22.1 1.3E+02 0.0044 29.1 6.3 35 436-472 37-71 (332)
237 4hbl_A Transcriptional regulat 22.1 31 0.0011 29.2 1.4 25 524-548 65-89 (149)
238 1rp3_A RNA polymerase sigma fa 21.9 93 0.0032 28.1 4.9 36 422-459 189-225 (239)
239 1wi9_A Protein C20ORF116 homol 21.9 24 0.00084 26.5 0.6 43 502-552 17-59 (72)
240 3cuo_A Uncharacterized HTH-typ 21.7 25 0.00086 27.3 0.7 27 525-551 49-75 (99)
241 3mcz_A O-methyltransferase; ad 21.6 1.1E+02 0.0036 29.9 5.6 34 437-472 56-89 (352)
242 1z91_A Organic hydroperoxide r 21.6 57 0.002 27.1 3.1 30 520-549 60-89 (147)
243 3e6m_A MARR family transcripti 21.5 47 0.0016 28.4 2.6 26 523-548 76-101 (161)
244 3eco_A MEPR; mutlidrug efflux 21.3 32 0.0011 28.5 1.3 28 524-551 57-86 (139)
245 3qp6_A CVIR transcriptional re 21.2 87 0.003 29.7 4.6 41 420-462 197-237 (265)
246 1t6s_A Conserved hypothetical 21.1 98 0.0034 27.2 4.5 107 430-546 15-137 (162)
247 3g3z_A NMB1585, transcriptiona 20.9 44 0.0015 27.8 2.2 26 524-549 55-80 (145)
248 1qzz_A RDMB, aclacinomycin-10- 20.8 92 0.0032 30.7 4.9 36 435-472 47-82 (374)
249 3bja_A Transcriptional regulat 20.8 39 0.0013 27.8 1.8 24 524-547 57-80 (139)
250 2nyx_A Probable transcriptiona 20.6 39 0.0013 29.3 1.8 28 524-551 69-98 (168)
251 2ek5_A Predicted transcription 20.6 1.2E+02 0.004 25.3 4.8 40 432-473 22-62 (129)
252 4aik_A Transcriptional regulat 20.4 34 0.0012 29.3 1.3 30 523-552 55-86 (151)
253 3jw4_A Transcriptional regulat 20.4 37 0.0013 28.6 1.6 26 523-548 66-91 (148)
254 3by6_A Predicted transcription 20.3 1E+02 0.0034 25.5 4.3 40 432-473 29-69 (126)
255 3bro_A Transcriptional regulat 20.0 36 0.0012 28.2 1.4 24 525-548 61-84 (141)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=1.7e-107 Score=921.22 Aligned_cols=527 Identities=30% Similarity=0.524 Sum_probs=483.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhhcCC-----------------------CC-----CCc
Q 043775 9 FDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNT-----------------------PN-----NNS 60 (554)
Q Consensus 9 ~e~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vY~~c~~~~-----------------------~~-----~y~ 60 (554)
||++|..|++||++|. .+ +++|..+||+||++|||||+++. |. .|.
T Consensus 1 f~~~W~~L~~ai~~I~---~~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~ 74 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVY---TR---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK 74 (760)
T ss_dssp CHHHHHHHHHHHHHHT---TC---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred ChhhHHHHHHHHHHHH---hc---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence 6899999999999963 33 36999999999999999999871 21 231
Q ss_pred hh----------------------------------------------------hccCC------CCcHHHHHHHHHHHH
Q 043775 61 AS----------------------------------------------------CKRRN------IPGFDEFGLACFRDL 82 (554)
Q Consensus 61 ~~----------------------------------------------------v~~~~------~~~i~~l~l~~fr~~ 82 (554)
.. |++++ .++||++||.+||++
T Consensus 75 ~l~~~l~~~l~~~~~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~ 154 (760)
T 1ldj_A 75 RLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDC 154 (760)
T ss_dssp HHHHHHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHHH
Confidence 11 55554 789999999999999
Q ss_pred HHHHHHHHHHHHHHH----HhcCCccCHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH
Q 043775 83 VYDALKHKAKDAVID----EREREQVDRALLANVLDIFVE------------------------HMLQDTSSYYSRISTN 134 (554)
Q Consensus 83 v~~~i~~~l~~~ll~----eR~g~~id~~~lk~~i~m~~~------------------------~fL~~t~~yY~~~s~~ 134 (554)
||.++++++++++|. +|.|+.||+.+|+++++||++ +||++|+.||+.+|+.
T Consensus 155 vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~ 234 (760)
T 1ldj_A 155 LFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTE 234 (760)
T ss_dssp HTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999998851 8999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHchhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhccCChHHHHHHHHHH
Q 043775 135 WILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFY 214 (554)
Q Consensus 135 ~i~~~~~~~Yl~~ve~~l~eE~~r~~~yL~~~t~~kl~~~~~~~Li~~~~~~ll~~~~sg~~~ll~~~~~~~L~~ly~L~ 214 (554)
|+++.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|.+.|+ +||..||++++.+||++||+|+
T Consensus 235 ~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L~ 310 (760)
T 1ldj_A 235 FLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNLV 310 (760)
T ss_dssp HHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999885 5899999999999999999999
Q ss_pred hhhhhh----------------------------------------HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhcCC
Q 043775 215 RTIRAG----------------------------------------PHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKT 254 (554)
Q Consensus 215 ~~~~~~----------------------------------------l~~~~~~l~~~~F~~~~~f~~~l~~af~~~iN~~ 254 (554)
+++++| ++++|+.++..||++|+.|..++++||+.|+|.+
T Consensus 311 ~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~ 390 (760)
T 1ldj_A 311 SRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNN 390 (760)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSS
T ss_pred CcCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCC
Confidence 999765 8999999999999999999999999999999987
Q ss_pred C------CCCChhhHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhHhccccChHHHHHHHHHHHHHHhcCCCCh-----
Q 043775 255 V------GGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSR----- 323 (554)
Q Consensus 255 ~------~~~~~~e~la~y~D~~lkk~~~~~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~----- 323 (554)
. +..++||+||+|||.+||++. ++.+++|++..|++++.||+|+++||+|+++|+++||+|||.++|.
T Consensus 391 ~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E 469 (760)
T 1ldj_A 391 AVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAE 469 (760)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHH
T ss_pred ccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 2 236899999999999999875 5678899999999999999999999999999999999999999986
Q ss_pred --------------------------hhHHHHHHHHHHHHhhccCCCCCCceeEEeeccCCCCCCCCCCCCCCCCCcHHH
Q 043775 324 --------------------------TLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQM 377 (554)
Q Consensus 324 --------------------------~~s~dl~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~~~~~lP~~l 377 (554)
..|++++..|++++.+. ...+++|+|.|||+|+||.+++.++ .||++|
T Consensus 470 ~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~~----~lP~~l 543 (760)
T 1ldj_A 470 ASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCTF----ALPSEL 543 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSCC----CCCGGG
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCCCC----cCCHHH
Confidence 34677888888877541 2347899999999999999865555 999999
Q ss_pred HHHHHHHHHHHHhcCCCceeEEeecCceEEEEEEEcCceEEEEecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHH
Q 043775 378 IKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRL 457 (554)
Q Consensus 378 ~~~~~~F~~fY~~k~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~ 457 (554)
+.+++.|++||.++|+||+|+|+|++|+|+|+++|++++++|+||++||+||++||+.+++|++||++.|||++++|+++
T Consensus 544 ~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~ 623 (760)
T 1ldj_A 544 ERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQV 623 (760)
T ss_dssp HHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccceeeeecC-----CCCCCCCCCeEEEcccCCCcccccc---------------------------------c
Q 043775 458 LHSLSILYYKILIKEP-----DTKSISRSDYFELNSKFTDRMRGSR---------------------------------S 499 (554)
Q Consensus 458 L~sL~~~k~kiL~~~~-----~~~~~~~~d~f~~N~~F~~~~~ki~---------------------------------R 499 (554)
|++|+ +.+||.+.| +|+++.++|.|.+|.+|++++.||+ |
T Consensus 624 L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVR 701 (760)
T 1ldj_A 624 LQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVR 701 (760)
T ss_dssp HHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheeeehh
Confidence 99996 788998665 7889999999999999999998876 9
Q ss_pred cccccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCCCC
Q 043775 500 LSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF 554 (554)
Q Consensus 500 iMK~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~~y 554 (554)
|||+||+|+|++|+.||++|+++||+|++.+||+|||+|||||||+||++|+++|
T Consensus 702 IMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y 756 (760)
T 1ldj_A 702 IMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTY 756 (760)
T ss_dssp HHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEE
T ss_pred hhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcce
Confidence 9999999999999999999999999999999999999999999999999998876
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=4e-106 Score=909.93 Aligned_cols=528 Identities=30% Similarity=0.541 Sum_probs=488.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhhcCCCC-CCchh-----------------------
Q 043775 7 IEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPN-NNSAS----------------------- 62 (554)
Q Consensus 7 ~~~e~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vY~~c~~~~~~-~y~~~----------------------- 62 (554)
.++|++|..|++||+.| +.++. .++| ||++|++|||||+++.+. .|...
T Consensus 57 ~~~e~~W~~L~~ai~~I---~~~~~-~~~s---~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~~~~l~~~~~~~~ 129 (759)
T 2hye_C 57 NYTQDTWRKLHEAVRAV---QSSTS-IRYN---LEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSV 129 (759)
T ss_dssp CTTTTHHHHHHHHHHTT---STTCC-CSSC---HHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTT
T ss_pred chHHHHHHHHHHHHHHH---HhCCC-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 46799999999999985 55543 4577 999999999999998653 23111
Q ss_pred -------------------------------hccCC-CCcHHHHHHHHHHHHHHHH--HHHHHHHHHHH----HhcCCcc
Q 043775 63 -------------------------------CKRRN-IPGFDEFGLACFRDLVYDA--LKHKAKDAVID----EREREQV 104 (554)
Q Consensus 63 -------------------------------v~~~~-~~~i~~l~l~~fr~~v~~~--i~~~l~~~ll~----eR~g~~i 104 (554)
|+++. .++|+++||.+||++||.+ +++++++++|. +|+|+.|
T Consensus 130 ~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~i 209 (759)
T 2hye_C 130 LFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAV 209 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhcCCCC
Confidence 55554 7899999999999999996 99999999999 9999999
Q ss_pred CHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHchhcCcccHHHHHHH
Q 043775 105 DRALLANVLDIFVE----------HMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLVEK 174 (554)
Q Consensus 105 d~~~lk~~i~m~~~----------~fL~~t~~yY~~~s~~~i~~~~~~~Yl~~ve~~l~eE~~r~~~yL~~~t~~kl~~~ 174 (554)
|+.+|+++++||++ +||++|++||+.+|+.|+++.++++||++|+.++++|.+||..||+++|.++|.++
T Consensus 210 d~~llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~~~t~~~l~~~ 289 (759)
T 2hye_C 210 DRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIAC 289 (759)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHH
T ss_pred cHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 99999999999987 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhhhccCChHHHHHHHHHHhhhhhh----------------------------------
Q 043775 175 VQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAG---------------------------------- 220 (554)
Q Consensus 175 ~~~~Li~~~~~~ll~~~~sg~~~ll~~~~~~~L~~ly~L~~~~~~~---------------------------------- 220 (554)
|+++||.+|++.|++ +||..||++++.+||++||+|++++++|
T Consensus 290 ~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~~~~~~~V~~ll 366 (759)
T 2hye_C 290 VEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDKDMVQDLL 366 (759)
T ss_dssp HHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGGTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCcccHHHHHHHHH
Confidence 999999999999986 4899999999999999999999999775
Q ss_pred -HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhHhccc
Q 043775 221 -PHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYI 299 (554)
Q Consensus 221 -l~~~~~~l~~~~F~~~~~f~~~l~~af~~~iN~~~~~~~~~e~la~y~D~~lkk~~~~~~~~~e~~~~l~~i~~lf~~l 299 (554)
++++|+.++..||++|+.|..++++||+.|+|.+. .++||+||+|||.+||+|. ++.+++|++..|++++.||+|+
T Consensus 367 ~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~Lk~~~-k~~~e~e~e~~L~~i~~lf~~i 443 (759)
T 2hye_C 367 DFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKLRAGN-KEATDEELERTLDKIMILFRFI 443 (759)
T ss_dssp HHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHSSCG-GGCCSTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHhhhhhhhc
Confidence 88999999999999999999999999999999864 5899999999999999865 5567889999999999999999
Q ss_pred cChHHHHHHHHHHHHHHhcCCCCh-------------------------------hhHHHHHHHHHHHHhhccCCCCCCc
Q 043775 300 SDKDLFAEFYRKKLARRLLFDRSR-------------------------------TLARKNQTGFEKYLRYNKNAHAGID 348 (554)
Q Consensus 300 ~~KD~F~~~Y~~~LakRLL~~~s~-------------------------------~~s~dl~~~f~~~~~~~~~~~~~~~ 348 (554)
++||+|+++|+++||+|||.+++. ..|++++..|++++...+ ...+++
T Consensus 444 ~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~-~~~~~~ 522 (759)
T 2hye_C 444 HGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS-DSGPID 522 (759)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCE
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCc
Confidence 999999999999999999999876 447788889988875432 234689
Q ss_pred eeEEeeccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCceeEEeecCceEEEEEEEcCceEEEEecHHHHHH
Q 043775 349 LSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAI 428 (554)
Q Consensus 349 ~~~~VLt~~~WP~~~~~~~~~~~~lP~~l~~~~~~F~~fY~~k~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Q~~I 428 (554)
|+|.|||+|+||.+++.++ .||++|+.+++.|++||.++|+||+|+|+|++|+|+|+++|++++++|+||++||+|
T Consensus 523 ~~v~VLs~~~WP~~~~~~~----~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~i 598 (759)
T 2hye_C 523 LTVNILTMGYWPTYTPMEV----HLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLV 598 (759)
T ss_dssp EEEEEEETTTSCCCCCCCC----CCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHH
T ss_pred eEEEEeCCCCCCCCCCCCC----cCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHH
Confidence 9999999999999876666 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcccCCCcccccc----------
Q 043775 429 LDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMRGSR---------- 498 (554)
Q Consensus 429 LllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~F~~~~~ki~---------- 498 (554)
|++||+.+++|++||++.|||++++|+++|++|+++|.+||.+.|+|+++.++|.|.+|.+|++++.||+
T Consensus 599 LllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~ 678 (759)
T 2hye_C 599 LLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETV 678 (759)
T ss_dssp HHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCH
T ss_pred HHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEeccccccccc
Confidence 9999999999999999999999999999999999888999999999999999999999999999998876
Q ss_pred -----------------------ccccccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCCCC
Q 043775 499 -----------------------SLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF 554 (554)
Q Consensus 499 -----------------------RiMK~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~~y 554 (554)
||||+||+|+|++|+.||++|++ |+|++.+||+|||+|||||||+||++|+++|
T Consensus 679 ~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~~~~~~y 755 (759)
T 2hye_C 679 EEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDYMERDKDNPNQY 755 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEE
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccceecCCCCCCee
Confidence 99999999999999999999998 9999999999999999999999999999876
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=5.8e-69 Score=560.71 Aligned_cols=294 Identities=29% Similarity=0.493 Sum_probs=261.1
Q ss_pred CCChhhHHHHHHHHHhhccC-CCCCCHHHHHHHHHHHhhHhccccChHHHHHHHHHHHHHHhcCCCCh------------
Q 043775 257 GFSSSEQLATFCDNILKKSG-NEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSR------------ 323 (554)
Q Consensus 257 ~~~~~e~la~y~D~~lkk~~-~~~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~------------ 323 (554)
..++||+||+|||.+||++. .++.+++|++..|++++.||+|+++||+|+++|+++||+|||.++|.
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 35899999999999999862 24578999999999999999999999999999999999999999875
Q ss_pred --------------------hhHHHHHHHHHHHHhhccCCCCCCceeEEeeccCCCCCCCC-CCCCCCCCCcHHHHHHHH
Q 043775 324 --------------------TLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKS-SDLNPIFNLPSQMIKCVE 382 (554)
Q Consensus 324 --------------------~~s~dl~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~-~~~~~~~~lP~~l~~~~~ 382 (554)
..|++++..|++++...+....+++|+|.|||+|+||.+++ .+ +.||++|+.+++
T Consensus 83 K~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~----~~lP~~l~~~~~ 158 (382)
T 3dpl_C 83 REVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVF----VSLPTELEDLIP 158 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCC----CCCCHHHHTTHH
T ss_pred HHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCC----ccCCHHHHHHHH
Confidence 23566677777765433222236899999999999999753 34 499999999999
Q ss_pred HHHHHHHhcCCCceeEEeecCceEEEEEEEcCceEEEEecHHHHHHHHHhhCC--CccCHHHHHHHhCCCHHHHHHHHHH
Q 043775 383 VFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNAS--NRLSYSQVITQLNLTHDDLVRLLHS 460 (554)
Q Consensus 383 ~F~~fY~~k~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Q~~ILllFN~~--~~lt~~ei~~~t~i~~~~l~~~L~s 460 (554)
.|++||.++|+||+|+|+|++|+|+|++++++++|+|+||++||+||++||+. +++|++||++.|||++++|+++|++
T Consensus 159 ~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~s 238 (382)
T 3dpl_C 159 EVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWS 238 (382)
T ss_dssp HHHHHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999985 8999999999999999999999999
Q ss_pred hhhc---cceeeeecCC---CCCCCCCCeEEEcccCCCc-----ccc--cc-----------------------------
Q 043775 461 LSIL---YYKILIKEPD---TKSISRSDYFELNSKFTDR-----MRG--SR----------------------------- 498 (554)
Q Consensus 461 L~~~---k~kiL~~~~~---~~~~~~~d~f~~N~~F~~~-----~~k--i~----------------------------- 498 (554)
|++. |.+||.+.|. ++++.++|+|.+|.+|++. .+| |+
T Consensus 239 L~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~ 318 (382)
T 3dpl_C 239 LVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQ 318 (382)
T ss_dssp HHCCTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheee
Confidence 9873 5689999875 3678899999999999872 122 21
Q ss_pred ----ccccccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCCCC
Q 043775 499 ----SLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF 554 (554)
Q Consensus 499 ----RiMK~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~~y 554 (554)
||||+||+|+|++|+.||++|+++||+|++.+||+|||+|||||||+||++|+++|
T Consensus 319 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y 378 (382)
T 3dpl_C 319 EAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTF 378 (382)
T ss_dssp HHHHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred EEEehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999998876
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-48 Score=411.19 Aligned_cols=258 Identities=22% Similarity=0.394 Sum_probs=224.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhhcCCCC-CCchh----------------------
Q 043775 6 LIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPN-NNSAS---------------------- 62 (554)
Q Consensus 6 ~~~~e~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vY~~c~~~~~~-~y~~~---------------------- 62 (554)
+.++|++|..|++||++| +.++. .++| ||+||++||+||+++.+. .|...
T Consensus 27 ~~~~~~~W~~L~~ai~~I---~~~~~-~~~s---~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~l~~~~~~ 99 (410)
T 4ap2_B 27 EKYVNSIWDLLKNAIQEI---QRKNN-SGLS---FEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNN 99 (410)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTTCC-TTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTTS
T ss_pred hhHHHHHHHHHHHHHHHH---HhcCC-CCCC---HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 357999999999999986 55544 3577 999999999999998654 23211
Q ss_pred -------------------------------hccCCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHH----HhcCCccC
Q 043775 63 -------------------------------CKRRNIPGFDEFGLACFRDLVYD--ALKHKAKDAVID----EREREQVD 105 (554)
Q Consensus 63 -------------------------------v~~~~~~~i~~l~l~~fr~~v~~--~i~~~l~~~ll~----eR~g~~id 105 (554)
|++++.++|+++||.+||++||. ++++++++++|. +|.|+.||
T Consensus 100 ~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id 179 (410)
T 4ap2_B 100 NFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVD 179 (410)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 66778999999999999999997 799999999988 99999999
Q ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHchhcCcccHHH
Q 043775 106 RALLANVLDIFVE---------------HMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEK 170 (554)
Q Consensus 106 ~~~lk~~i~m~~~---------------~fL~~t~~yY~~~s~~~i~~~~~~~Yl~~ve~~l~eE~~r~~~yL~~~t~~k 170 (554)
+.+|+++++||++ +||++|++||+.+|+.|++..++++||++|+.++++|.+||..||+++|.++
T Consensus 180 ~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~sT~~k 259 (410)
T 4ap2_B 180 RGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEP 259 (410)
T ss_dssp HHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999875 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhhhhccCChHHHHHHHHHHhhhhhh------------------------------
Q 043775 171 LVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAG------------------------------ 220 (554)
Q Consensus 171 l~~~~~~~Li~~~~~~ll~~~~sg~~~ll~~~~~~~L~~ly~L~~~~~~~------------------------------ 220 (554)
|.++|+++||.+|.+.|++++++||..||++++.+||++||+|++|+++|
T Consensus 260 L~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~~~~~~ 339 (410)
T 4ap2_B 260 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPV 339 (410)
T ss_dssp HHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC------CH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhccccccChH
Confidence 99999999999999999988889999999999999999999999999876
Q ss_pred --------HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhh
Q 043775 221 --------PHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILK 273 (554)
Q Consensus 221 --------l~~~~~~l~~~~F~~~~~f~~~l~~af~~~iN~~~~~~~~~e~la~y~D~~lk 273 (554)
++++|+.+|..||++|+.|..|+++||+.|||.+. +.||+||+|||..--
T Consensus 340 ~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~---~spElla~y~D~~~~ 397 (410)
T 4ap2_B 340 DYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS---RSPEYLAENLYFQSH 397 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC---CCHHHHHHHccCccc
Confidence 99999999999999999999999999999999984 788999999998644
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=9.7e-46 Score=385.02 Aligned_cols=244 Identities=21% Similarity=0.420 Sum_probs=191.8
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhhcCCCC-CCchh--------------------
Q 043775 4 RRLIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPN-NNSAS-------------------- 62 (554)
Q Consensus 4 ~~~~~~e~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vY~~c~~~~~~-~y~~~-------------------- 62 (554)
.++.++|++|..|++||++| +.++. .++| ||+||++||+||+++.+. .|...
T Consensus 8 ~~~~~~~~~W~~L~~ai~~I---~~~~~-~~~s---~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~~~~~~ 80 (364)
T 4eoz_B 8 MDEKYVNSIWDLLKNAIQEI---QRKNN-SGLS---FEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSL 80 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HTTCG-GGCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTT
T ss_pred CChhhHHHHHHHHHHHHHHH---HhcCC-CCCC---HHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34468999999999999986 44443 3577 999999999999998654 23211
Q ss_pred ---------------------------------hccCCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHH----HhcCCc
Q 043775 63 ---------------------------------CKRRNIPGFDEFGLACFRDLVYD--ALKHKAKDAVID----EREREQ 103 (554)
Q Consensus 63 ---------------------------------v~~~~~~~i~~l~l~~fr~~v~~--~i~~~l~~~ll~----eR~g~~ 103 (554)
|++++.++|+++||.+||++||. ++++++++++|. +|.|+.
T Consensus 81 ~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~ 160 (364)
T 4eoz_B 81 NNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEV 160 (364)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCCC
Confidence 67778999999999999999997 899999999988 999999
Q ss_pred cCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHchhcCcccH
Q 043775 104 VDRALLANVLDIFVE---------------HMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGE 168 (554)
Q Consensus 104 id~~~lk~~i~m~~~---------------~fL~~t~~yY~~~s~~~i~~~~~~~Yl~~ve~~l~eE~~r~~~yL~~~t~ 168 (554)
||+.+|+++++||++ +||++|.+||+.+|+.|++..++++||++|+.++++|.+||..||+++|.
T Consensus 161 id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~ 240 (364)
T 4eoz_B 161 VDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTE 240 (364)
T ss_dssp CCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred CCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccH
Confidence 999999999999875 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhccCChHHHHHHHHHHhhhhhh----------------------------
Q 043775 169 EKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAG---------------------------- 220 (554)
Q Consensus 169 ~kl~~~~~~~Li~~~~~~ll~~~~sg~~~ll~~~~~~~L~~ly~L~~~~~~~---------------------------- 220 (554)
++|.++|+++||.+|.+.|++++++||..||++++.+||++||+|++|+++|
T Consensus 241 ~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~ 320 (364)
T 4eoz_B 241 EPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKN 320 (364)
T ss_dssp HHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence 9999999999999999999988889999999999999999999999999876
Q ss_pred ----------HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhcCC
Q 043775 221 ----------PHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKT 254 (554)
Q Consensus 221 ----------l~~~~~~l~~~~F~~~~~f~~~l~~af~~~iN~~ 254 (554)
++++|+.+|..||++|+.|..|+++||+.|||.|
T Consensus 321 ~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 321 PVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp --------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999975
No 6
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=374.36 Aligned_cols=241 Identities=25% Similarity=0.482 Sum_probs=216.5
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhhcCCCC-CCchh---------------------
Q 043775 5 RLIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPN-NNSAS--------------------- 62 (554)
Q Consensus 5 ~~~~~e~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vY~~c~~~~~~-~y~~~--------------------- 62 (554)
...++|++|..|++||++| +.++. .++| ||++|++||+||+++.+. .|...
T Consensus 6 ~~~~~~~~W~~L~~ai~~I---~~~~~-~~~s---~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~ 78 (354)
T 4a64_A 6 PENYTDETWQKLKEAVEAI---QNSTS-IKYN---LEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLD 78 (354)
T ss_dssp CSSSTTHHHHHHHHHHHHH---HTTCC-CCSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGGGGCCSCC
T ss_pred CHHHHHHHHHHHHHHHHHH---HhCCC-CCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4468999999999999996 44543 3577 999999999999998654 23211
Q ss_pred ---------------------------------hccCC-CCcHHHHHHHHHHHHHHH--HHHHHHHHHHHH----HhcCC
Q 043775 63 ---------------------------------CKRRN-IPGFDEFGLACFRDLVYD--ALKHKAKDAVID----ERERE 102 (554)
Q Consensus 63 ---------------------------------v~~~~-~~~i~~l~l~~fr~~v~~--~i~~~l~~~ll~----eR~g~ 102 (554)
|++++ .++|+++||.+||++||. ++++++++++|. +|.|+
T Consensus 79 ~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge 158 (354)
T 4a64_A 79 SVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGE 158 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCC
Confidence 55555 799999999999999997 799999999999 99999
Q ss_pred ccCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHchhcCcccHHHHH
Q 043775 103 QVDRALLANVLDIFVE----------HMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLV 172 (554)
Q Consensus 103 ~id~~~lk~~i~m~~~----------~fL~~t~~yY~~~s~~~i~~~~~~~Yl~~ve~~l~eE~~r~~~yL~~~t~~kl~ 172 (554)
.||+++|+++++||.+ +||++|++||+.+|+.|+++.++++||++|+.++++|.+||..||+++|.++|.
T Consensus 159 ~id~~lik~~i~ml~~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~ 238 (354)
T 4a64_A 159 AIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLI 238 (354)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred CCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 9999999999999876 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhhccCChHHHHHHHHHHhhhhhh--------------------------------
Q 043775 173 EKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAG-------------------------------- 220 (554)
Q Consensus 173 ~~~~~~Li~~~~~~ll~~~~sg~~~ll~~~~~~~L~~ly~L~~~~~~~-------------------------------- 220 (554)
++|+++||.+|.+.|+ ++||..||++++.+||++||+|++|+++|
T Consensus 239 ~~~e~~LI~~h~~~ll---~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~V~~ 315 (354)
T 4a64_A 239 ATVEKQLLGEHLTAIL---QKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMRQE 315 (354)
T ss_dssp HHHHHHHTGGGHHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCccchHHHHHH
Confidence 9999999999999988 37999999999999999999999999877
Q ss_pred ---HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhcCCC
Q 043775 221 ---PHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTV 255 (554)
Q Consensus 221 ---l~~~~~~l~~~~F~~~~~f~~~l~~af~~~iN~~~ 255 (554)
++++|+.+|.+||++|+.|..|+++||+.|||.++
T Consensus 316 LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 316 LDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999999874
No 7
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=3.1e-44 Score=376.97 Aligned_cols=243 Identities=21% Similarity=0.436 Sum_probs=217.5
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhhcCCC---CCCchh-----------------
Q 043775 3 QRRLIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTP---NNNSAS----------------- 62 (554)
Q Consensus 3 ~~~~~~~e~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vY~~c~~~~~---~~y~~~----------------- 62 (554)
++++.+||++|+.|++||++|.. + .+++...||++|++|||||++++. ..|...
T Consensus 9 ~~~~~~~e~~W~~L~~ai~~I~~---~---~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~ 82 (391)
T 2wzk_A 9 NKGSLQFEDKWDFMHPIVLKLLR---Q---ESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLS 82 (391)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHH---T---CCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccccHHHHHHHHHHHHHHHHh---C---CCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45668999999999999999743 2 358888999999999999997422 223211
Q ss_pred ------------------------------------hccC--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 043775 63 ------------------------------------CKRR--------NIPGFDEFGLACFRDLVYDALKHKAKDAVID- 97 (554)
Q Consensus 63 ------------------------------------v~~~--------~~~~i~~l~l~~fr~~v~~~i~~~l~~~ll~- 97 (554)
|+++ +.++|+++||.+||++||.++++++++++|.
T Consensus 83 ~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ll~l 162 (391)
T 2wzk_A 83 HQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKL 162 (391)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 3579999999999999999999999999999
Q ss_pred ---HhcCCccCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 043775 98 ---EREREQVDRALLANVLDIFVE------------------HMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKER 156 (554)
Q Consensus 98 ---eR~g~~id~~~lk~~i~m~~~------------------~fL~~t~~yY~~~s~~~i~~~~~~~Yl~~ve~~l~eE~ 156 (554)
+|.|+.||+++|+++++||++ +||++|++||+.+|++|+++.++++||++|+.+|++|.
T Consensus 163 I~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~ 242 (391)
T 2wzk_A 163 VHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEE 242 (391)
T ss_dssp HHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999963 99999999999999999999999999999999999999
Q ss_pred HHHchhcC----cccHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhccCChHHHHHHHHHHhhhhhh------------
Q 043775 157 DRVSRYLQ----SNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAG------------ 220 (554)
Q Consensus 157 ~r~~~yL~----~~t~~kl~~~~~~~Li~~~~~~ll~~~~sg~~~ll~~~~~~~L~~ly~L~~~~~~~------------ 220 (554)
+||..||+ ++|.++|.++|+++||.+|.+.|++ ||..||++++.+||++||+|++|+++|
T Consensus 243 ~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I 318 (391)
T 2wzk_A 243 KRALRYLETRRECNSVEALMECCVNALVTSFKETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHI 318 (391)
T ss_dssp HHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHH
T ss_pred HHHHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999974 699999999999999999999999775
Q ss_pred ----------------------------HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhcCCC
Q 043775 221 ----------------------------PHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTV 255 (554)
Q Consensus 221 ----------------------------l~~~~~~l~~~~F~~~~~f~~~l~~af~~~iN~~~ 255 (554)
++++|+.+|..||++|+.|..|+++||+.|||.++
T Consensus 319 ~~~G~~~v~~~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 319 ISAGLADMVAAAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCch
Confidence 89999999999999999999999999999999874
No 8
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.79 E-value=8.2e-21 Score=149.43 Aligned_cols=56 Identities=43% Similarity=0.637 Sum_probs=54.8
Q ss_pred ccccccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCCCC
Q 043775 499 SLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF 554 (554)
Q Consensus 499 RiMK~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~~y 554 (554)
||||+||+|+|++|+.||++++++||+|++.+||+|||+|||||||+||++|+++|
T Consensus 18 RIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y 73 (77)
T 3tdu_C 18 RIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTY 73 (77)
T ss_dssp HHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred eeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999998876
No 9
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.76 E-value=8.3e-20 Score=148.79 Aligned_cols=56 Identities=39% Similarity=0.649 Sum_probs=54.9
Q ss_pred ccccccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCCCC
Q 043775 499 SLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF 554 (554)
Q Consensus 499 RiMK~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~~y 554 (554)
||||+||+|+|++|+.||+++|++||+|++.+||+|||.|||||||+||++|+++|
T Consensus 33 RIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y 88 (92)
T 1iuy_A 33 RIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVY 88 (92)
T ss_dssp HHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEE
T ss_pred ehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCee
Confidence 99999999999999999999999999999999999999999999999999998876
No 10
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.76 E-value=8.6e-20 Score=147.11 Aligned_cols=55 Identities=29% Similarity=0.556 Sum_probs=53.5
Q ss_pred ccccccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCCCC
Q 043775 499 SLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF 554 (554)
Q Consensus 499 RiMK~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~~y 554 (554)
||||+||+|+|++|+.||++|+++||+|++.+||+|||.|||||||+|+++| ++|
T Consensus 30 RIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y 84 (88)
T 3o2p_E 30 RIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESY 84 (88)
T ss_dssp HHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEE
T ss_pred hhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeE
Confidence 9999999999999999999999999999999999999999999999999988 765
No 11
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-18 Score=141.96 Aligned_cols=54 Identities=46% Similarity=0.676 Sum_probs=52.7
Q ss_pred ccccccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCCCC
Q 043775 499 SLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF 554 (554)
Q Consensus 499 RiMK~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~~y 554 (554)
||||+||+|+|++|+.||+++|+ |+|++.+||+|||.|||||||+||++|+++|
T Consensus 38 RIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y 91 (101)
T 2do7_A 38 RIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQY 91 (101)
T ss_dssp HHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEE
T ss_pred HHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeE
Confidence 99999999999999999999998 9999999999999999999999999998876
No 12
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=91.46 E-value=0.24 Score=38.41 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=40.4
Q ss_pred HHHHHhhCC------CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCC
Q 043775 427 AILDLFNAS------NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSI 478 (554)
Q Consensus 427 ~ILllFN~~------~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~ 478 (554)
.||...++. ...|+.||++.+|++...+.+.|..|. +.+.|.+.++++.+
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~~ 63 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKGV 63 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSSS
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCCCc
Confidence 355444443 789999999999999999999999996 67889888766554
No 13
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=89.87 E-value=0.49 Score=37.82 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=43.5
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCC
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPD 474 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~ 474 (554)
+..|..||..+.+.+.+|+.||++.+|++...+.++|..|. +.+++...+.
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~~~ 73 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQRD 73 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEEC
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEec
Confidence 45678888888887789999999999999999999999995 5678876543
No 14
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=88.41 E-value=0.5 Score=37.87 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=44.0
Q ss_pred EEEecHHHHHHHHHhhC--CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 418 ELIISTYHAAILDLFNA--SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 418 ~l~vs~~Q~~ILllFN~--~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
...++..|..||....+ ++.++..||++.++++...+.++|..|. +.+++.+.
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE--~kglIkr~ 69 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE--SKKLIKAV 69 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred hcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34567889999987776 6689999999999999999999999996 45666643
No 15
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.65 E-value=0.61 Score=37.66 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=43.7
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
++..|..||..+...+.+|..+|++.+|++...+.++|..|. +.+++.+.
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~--~~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLL--KRGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 577899999888777789999999999999999999999996 56777764
No 16
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=87.33 E-value=0.85 Score=39.10 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=45.2
Q ss_pred EEecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 419 LIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 419 l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+.++..|..||......+ +|..||++.+|++...+.++|..|. +.+++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~--~~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLV--KEGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeEecc
Confidence 457899999999998888 9999999999999999999999996 668888764
No 17
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=87.30 E-value=1.2 Score=35.52 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=43.8
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEccc
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSK 489 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~ 489 (554)
+..+..||.++ ...+|+.||++.+|++...+.++|..|. +.+++.+.+ | .|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~--~~Glv~~~~-g-------~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLE--AGFCIERVG-E-------RWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET-T-------EEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEC-C-------EEEECCC
Confidence 34566677666 4569999999999999999999999996 567887654 2 6777654
No 18
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=87.27 E-value=0.47 Score=51.47 Aligned_cols=116 Identities=11% Similarity=0.072 Sum_probs=48.8
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhc---cceeeeecCCCCCCCCCCeEEEcccCCCcc----
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSIL---YYKILIKEPDTKSISRSDYFELNSKFTDRM---- 494 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~---k~kiL~~~~~~~~~~~~d~f~~N~~F~~~~---- 494 (554)
+..+..||....++..+|..+|++.+|++...+.+.|..|... ..+++...+ +.|.++.......
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g--------~~y~L~~~~~~~~~~~~ 500 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHD--------GVWLLGNACREILRKVE 500 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEET--------TEEEECHHHHHHHTSCC
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeC--------CEEEECHHHHHHhcccc
Confidence 5567788888788889999999999999999999999999631 146776542 5677776532111
Q ss_pred ------------------ccccccccccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCCC
Q 043775 495 ------------------RGSRSLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNT 553 (554)
Q Consensus 495 ------------------~ki~RiMK~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~~ 553 (554)
..|-..++.++.++-.|+..- +..+.....+.|..|+++|-|++....+++
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~I~~~l~~~g~it~~di~~l--------~~ls~~qa~~~L~~Lv~~G~l~~~G~gr~t 569 (583)
T 3lmm_A 501 PSPFSPVRYLSTDQAELTNAAMLWLSEVGDLATSDLMAM--------CGVSRGTAKACVDGLVDEERVVAVGGGRSR 569 (583)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccccccccccCChhHHHHHHHHHHHHcCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCcEEEeCCCCce
Confidence 112244555666666555432 335667789999999999999998766554
No 19
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=87.26 E-value=0.8 Score=39.35 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=45.2
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA--GQGLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 578899999988777789999999999999999999999996 568888764
No 20
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=87.20 E-value=0.66 Score=39.75 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=46.4
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.+|..|..||......+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCeEecC
Confidence 3578899999999888999999999999999999999999996 668888765
No 21
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=87.12 E-value=1.7 Score=33.46 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=36.4
Q ss_pred HHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 427 AILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 427 ~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
.||..+.+...+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~--~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLE--KAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 466666666789999999999999999999999996 56777754
No 22
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=86.94 E-value=1.1 Score=35.78 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=46.1
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcc
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNS 488 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~ 488 (554)
+..+..||....+ +.+|+.||++.+|++...+.++|..|. +.+++.....|+ ...|.++.
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g~----~~~y~l~~ 81 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLR--RDGLVTTRKEAQ----TVYYTLKS 81 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECCTT----CCEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCC----EEEEEECH
Confidence 3456667777766 789999999999999999999999995 578887765443 23566654
No 23
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=86.01 E-value=1.2 Score=35.91 Aligned_cols=51 Identities=12% Similarity=0.194 Sum_probs=40.6
Q ss_pred ecHHHHHHHHHhh-CCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFN-ASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN-~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..+|+.+- ..+.+|..||++.+|++...+.++|..|. +.+++.+.+
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~--~~g~v~~~~ 70 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLI--ELGLVVRTK 70 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEeec
Confidence 4566776665443 36789999999999999999999999996 567777654
No 24
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=85.90 E-value=0.81 Score=35.32 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHHHhhCCC---ccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 425 HAAILDLFNASN---RLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 425 Q~~ILllFN~~~---~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+..||.++.+.. .+|..||++.+|++...+.++|..|. +.+++...+
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~g 65 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecC
Confidence 355665555544 89999999999999999999999995 567777654
No 25
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=85.56 E-value=0.67 Score=39.72 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=42.2
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 4688899999998888899999999999999999999999996 668887764
No 26
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=85.56 E-value=1 Score=38.76 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=45.1
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 88 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE--EKKYIEVNG 88 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeec
Confidence 4688899999998888899999999999999999999999996 568887764
No 27
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=85.44 E-value=0.96 Score=38.20 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=43.7
Q ss_pred EEecHHHHHHHHHhhCCCc--cCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 419 LIISTYHAAILDLFNASNR--LSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 419 l~vs~~Q~~ILllFN~~~~--lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+.++..|..||..+-..+. +|..||++.++++...+.++|..|. +.+++.+.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~--~~GlV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH--EKEILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEee
Confidence 3467889999987776555 9999999999999999999999996 56787764
No 28
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=85.37 E-value=1.4 Score=38.21 Aligned_cols=51 Identities=4% Similarity=0.141 Sum_probs=45.3
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 91 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMD--ARGLVTRVA 91 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 578899999999888899999999999999999999999996 567887654
No 29
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=85.28 E-value=0.73 Score=39.50 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=45.2
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLL--RKELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCeeccC
Confidence 578899999888877899999999999999999999999996 568888764
No 30
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=85.00 E-value=0.91 Score=39.32 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=44.4
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+|..|..||......+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE--QSGWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeCC
Confidence 578899999988878899999999999999999999999996 668888764
No 31
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=84.73 E-value=1.2 Score=38.53 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=44.2
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
++..|..||......+.+|..+|++.++++...+.+.+..|. +.+++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLI--SLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 578899999888888889999999999999999999999996 5678877
No 32
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.64 E-value=1.2 Score=38.09 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=44.1
Q ss_pred ecHHHHHHHHHh-hCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLF-NASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllF-N~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||... ...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~--~~glv~r~~ 86 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE--SQGLVRRLA 86 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCeeecC
Confidence 467788899888 777899999999999999999999999996 567887654
No 33
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=84.58 E-value=1.3 Score=34.29 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=37.2
Q ss_pred HHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 428 ILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 428 ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
|+...+++..++++||++.+++++..+.+-|..|. +.+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le--~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLE--SMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 56677888999999999999999999999999996 55667665
No 34
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=84.43 E-value=0.94 Score=38.35 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=44.6
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||.....++.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~--~~glv~~~~ 77 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLE--ESGFIEREQ 77 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeec
Confidence 578899999888888899999999999999999999999996 567777653
No 35
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=84.34 E-value=0.91 Score=38.38 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=44.2
Q ss_pred EecHHHHHHHHHhhCC--CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNAS--NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~--~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|..||...... +.+|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS--QEDYFDKKR 87 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH--HTTSSCCBC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 3577888888777666 789999999999999999999999996 568887764
No 36
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=84.32 E-value=1.4 Score=34.15 Aligned_cols=52 Identities=13% Similarity=0.264 Sum_probs=44.1
Q ss_pred EecHHHHHHHHHhhCC--CccCHHHHHHHh-----CCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNAS--NRLSYSQVITQL-----NLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~--~~lt~~ei~~~t-----~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++.-+..||-.+.+. ..+|++||++.+ +++...+-++|..|. +.+++.+.+
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~--~~Glv~~~~ 72 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD--DAGIVTRHN 72 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCeEEEe
Confidence 4567788899888775 589999999999 999999999999996 567887653
No 37
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=84.30 E-value=1.5 Score=37.36 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=43.6
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||.... .+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~~ 84 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLE--EMGLVVRVR 84 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHH--HCCCEEeec
Confidence 4788999998888 8899999999999999999999999996 567777653
No 38
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=84.24 E-value=1.1 Score=38.00 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=43.6
Q ss_pred ecHHHHHHHHHhhCCC--ccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASN--RLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~--~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+|..|..||......+ .+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~~ 81 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE--RKKLIYRYV 81 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeecC
Confidence 5778999988777654 99999999999999999999999996 567887754
No 39
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=84.05 E-value=1.4 Score=37.99 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=45.0
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 88 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQ--RAGLIERRT 88 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeeecC
Confidence 578899999988887899999999999999999999999996 567887754
No 40
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=83.38 E-value=1.2 Score=37.80 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=44.2
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~gli~r~~ 82 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLV--CKGWVERLP 82 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHH--HCCCEEecC
Confidence 578899999888777789999999999999999999999996 567777653
No 41
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=83.11 E-value=1.6 Score=37.03 Aligned_cols=51 Identities=12% Similarity=0.281 Sum_probs=43.4
Q ss_pred ecHHHHHHHHHhhCCC--ccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASN--RLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~--~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+ .+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~~ 84 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME--IKKLLYRKV 84 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH--HCCCEEeeC
Confidence 5778998888777666 89999999999999999999999996 567777654
No 42
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=83.09 E-value=1.6 Score=33.89 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCCccCHHHHHHHhCCCHH-HHHHHHHHhhhccceeeeecCCC
Q 043775 423 TYHAAILDLFNASNRLSYSQVITQLNLTHD-DLVRLLHSLSILYYKILIKEPDT 475 (554)
Q Consensus 423 ~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~-~l~~~L~sL~~~k~kiL~~~~~~ 475 (554)
..+--||.+.......|..+|++.+||+.. .+.++|..|. +-+++.+.+.|
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~~~g 62 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQGTT 62 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEECSS
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEecCCC
Confidence 446667777777788999999999999998 9999999996 56777665433
No 43
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=82.84 E-value=1.5 Score=38.28 Aligned_cols=51 Identities=12% Similarity=0.095 Sum_probs=44.0
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~glv~r~~ 97 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLL--ERGFIRRET 97 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeec
Confidence 578899999888878899999999999999999999999996 568887653
No 44
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=82.65 E-value=1.8 Score=36.42 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=44.2
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcc
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNS 488 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~ 488 (554)
++.+..||..+...+.+|+.||++.+|++...+.++|..|. ..+++.....|+ ...|.++.
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~~gr----~~~y~l~~ 101 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRKEGK----LALYSLGD 101 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC--------CCEEEESC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEECC----EEEEEECH
Confidence 34455677777656789999999999999999999999996 567887654332 23566654
No 45
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=82.62 E-value=1.2 Score=39.15 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=45.2
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLV--DEGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeeC
Confidence 577899999888877899999999999999999999999996 668888764
No 46
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=82.57 E-value=1.1 Score=39.41 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=45.2
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL--ANGWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCeEecC
Confidence 578899999988888899999999999999999999999996 568887764
No 47
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=82.42 E-value=1.8 Score=33.70 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHHHhhCCC---ccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 425 HAAILDLFNASN---RLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 425 Q~~ILllFN~~~---~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+..||.++.+.. .+|..||++.+|++...+.++|..|. +.+++.+.+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~~g 61 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEES
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecC
Confidence 455665555555 89999999999999999999999995 567777654
No 48
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=82.31 E-value=1.5 Score=37.90 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=44.7
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~~ 95 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQ--AAGLVTRTR 95 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeecC
Confidence 578899999888878899999999999999999999999996 567777654
No 49
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=82.30 E-value=3 Score=33.46 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEccc
Q 043775 423 TYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSK 489 (554)
Q Consensus 423 ~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~ 489 (554)
+....||....+ +.+|+.||++.+|++...+.++|..|. ..+++.....|+ ...|.++..
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g~----~~~y~l~~~ 82 (102)
T 3pqk_A 23 PVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLR--ESGIVETRRNIK----QIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHH--HTTSEEEECSSS----CCEEEECSS
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCC----EEEEEECcH
Confidence 344556665555 569999999999999999999999995 578887765443 346777653
No 50
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=82.10 E-value=1.4 Score=37.34 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=44.8
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~--~~gli~~~~ 79 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLE--ESGYIIRKR 79 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 4678899999888777789999999999999999999999996 557777653
No 51
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=82.08 E-value=1 Score=36.15 Aligned_cols=52 Identities=6% Similarity=0.012 Sum_probs=44.4
Q ss_pred EecHHHHHHHHHhhCCCccCHHHH----HHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQV----ITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei----~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|..||......+.+|..+| ++.++++...+.+.|..|. +.+++.+.+
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le--~~gli~r~~ 60 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLI--QEGFVKERQ 60 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH--HCCCEEEEe
Confidence 357789999998888889999999 8999999999999999996 557777653
No 52
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=81.87 E-value=1.1 Score=37.88 Aligned_cols=51 Identities=8% Similarity=0.041 Sum_probs=44.1
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
.++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~--~~glv~r~ 85 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLD--KRGLIQRS 85 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHH--HTTCEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 3577899999888777799999999999999999999999996 55777764
No 53
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=81.67 E-value=2 Score=33.60 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=34.7
Q ss_pred HHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 427 AILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 427 ~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
-||.+..... +|+.||++.+|++...+.++|..|. +.+++.+.+
T Consensus 21 ~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le--~eG~I~~~~ 64 (82)
T 1oyi_A 21 EAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQ--RSAMVYSSD 64 (82)
T ss_dssp HHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEECS
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeCC
Confidence 3444444444 9999999999999999999999995 567777653
No 54
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=81.53 E-value=1.7 Score=38.55 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCceeEEeecCceEEEEEEEcCceEEEEecHHHHHHHHHhhC-CCccCHHHHHHHhCCC
Q 043775 372 NLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNA-SNRLSYSQVITQLNLT 450 (554)
Q Consensus 372 ~lP~~l~~~~~~F~~fY~~k~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Q~~ILllFN~-~~~lt~~ei~~~t~i~ 450 (554)
.+.-.+..+...+...+...... +.++..|..||..... .+.+|..||++.++++
T Consensus 26 ~l~~~l~~~~~~~~~~~~~~l~~------------------------~glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~ 81 (166)
T 3deu_A 26 PLGSDLARLVRIWRALIDHRLKP------------------------LELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIE 81 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTT------------------------TTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh------------------------cCCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCC
Confidence 44455666666666666543211 1256789999988776 6789999999999999
Q ss_pred HHHHHHHHHHhhhccceeeeecC
Q 043775 451 HDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 451 ~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
...+.+.|..|. +.+++.+.+
T Consensus 82 ~~tvs~~l~~Le--~~GlV~r~~ 102 (166)
T 3deu_A 82 QPSLVRTLDQLE--DKGLISRQT 102 (166)
T ss_dssp HHHHHHHHHHHH--HTTSEEEC-
T ss_pred HhhHHHHHHHHH--HCCCEEeeC
Confidence 999999999996 668888764
No 55
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=81.43 E-value=1.5 Score=38.27 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=44.7
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~~ 100 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQ--ADGLVRREV 100 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEecC
Confidence 578899999988888899999999999999999999999996 567777653
No 56
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.42 E-value=1.7 Score=37.23 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=45.1
Q ss_pred EecHHHHHHHHHhhC-CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNA-SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~-~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|..||..... .+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le--~~glv~r~~ 84 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELE--RGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCEeeCC
Confidence 367889999988877 7889999999999999999999999996 567887764
No 57
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=81.40 E-value=1.3 Score=39.25 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=45.2
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 93 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLV--GAELIDRLP 93 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 4678899999888877789999999999999999999999996 567887653
No 58
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=81.16 E-value=1.2 Score=38.00 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=44.3
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|+.||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~--~~glv~r~~ 81 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLE--ADGYLTRTP 81 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeecC
Confidence 578899999888777789999999999999999999999996 567777653
No 59
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=81.13 E-value=0.92 Score=38.40 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=44.6
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~--~~gli~r~~ 81 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMK--RDGYVMTEK 81 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCeeecc
Confidence 578899999888888899999999999999999999999996 557777653
No 60
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=81.09 E-value=2.5 Score=36.08 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=39.8
Q ss_pred ecHHHHHHHHHhh-CCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFN-ASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN-~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||.... ..+.+|..||++.+|++...+.++|..|. +.+++.+.+
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~--~~G~v~r~~ 75 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE--ELGFVRKVW 75 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 4556666654432 34679999999999999999999999996 568887764
No 61
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=81.02 E-value=3.3 Score=31.09 Aligned_cols=57 Identities=9% Similarity=0.168 Sum_probs=42.6
Q ss_pred HHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcccCC
Q 043775 425 HAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFT 491 (554)
Q Consensus 425 Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~F~ 491 (554)
.-.|.-+|..+.-+|+.+|.+.|+=|+..|+.+|..++ ++.+.++ -...+.+-++|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 34577789999999999999999999999999999885 4554432 124455555553
No 62
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=81.00 E-value=1.3 Score=37.71 Aligned_cols=51 Identities=6% Similarity=0.083 Sum_probs=44.0
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le--~~gli~r~~ 77 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLE--EQGFIYRQE 77 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeec
Confidence 577799999888777899999999999999999999999996 557777653
No 63
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=80.85 E-value=1.6 Score=33.69 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=44.3
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhC----CCHHHHHHHHHHhhhccceeeeecCC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLN----LTHDDLVRLLHSLSILYYKILIKEPD 474 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~----i~~~~l~~~L~sL~~~k~kiL~~~~~ 474 (554)
.++..|..||...-+.+.+|..||++.++ ++...+.+.|..|. +.+++.+.+.
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~--~kGlv~r~~~ 62 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLI--KKGALNHHKE 62 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHH--HTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHH--HCCCeEEEec
Confidence 36788999998887778999999999996 68899999999996 5678877653
No 64
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=80.84 E-value=1.8 Score=34.21 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=37.0
Q ss_pred HHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 428 ILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 428 ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
|+...++...+|++||++.+++++..+.+-|..|. +.+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le--~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERME--AMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHH--TTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 66677888999999999999999999999999996 55666664
No 65
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=80.70 E-value=1.2 Score=33.26 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=35.7
Q ss_pred HHHHHHHHhhCC-CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 424 YHAAILDLFNAS-NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 424 ~Q~~ILllFN~~-~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
..-.||.++.+. ..+|..||++.+|++...+.+.|..|. +.+++..
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~--~~G~I~~ 57 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLK--KEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHH--HTTSEEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEec
Confidence 344577777544 579999999999999999999999996 3455543
No 66
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=80.61 E-value=1.6 Score=37.46 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=44.1
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 90 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRME--RNGLVARVR 90 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeecC
Confidence 578899999888877889999999999999999999999996 557777653
No 67
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=80.31 E-value=1.4 Score=38.18 Aligned_cols=52 Identities=8% Similarity=0.175 Sum_probs=45.0
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~~ 85 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLE--QKNLIARTH 85 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecC
Confidence 3678899999888877889999999999999999999999996 567777654
No 68
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.31 E-value=1.7 Score=37.63 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=44.1
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~~ 92 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLE--KRGLVVREM 92 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeeC
Confidence 578899999888777789999999999999999999999996 567777653
No 69
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=80.16 E-value=1.2 Score=39.07 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=44.0
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 98 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV--DEGYVFRQR 98 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 466788888888777899999999999999999999999996 567887654
No 70
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=80.12 E-value=1.1 Score=38.22 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=44.6
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~--~~gli~r~~ 85 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRME--QVDLIKRER 85 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeec
Confidence 578899999988877889999999999999999999999996 557777654
No 71
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=80.09 E-value=2.2 Score=36.26 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=41.8
Q ss_pred EEEecHHHHHHHHHhh---C--CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 418 ELIISTYHAAILDLFN---A--SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 418 ~l~vs~~Q~~ILllFN---~--~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.+-++.-|+.||+.+- + ....|.++|++.+|++..++.++|..|. +.++|.+.+
T Consensus 27 ~lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le--~kGlI~~~~ 85 (128)
T 2vn2_A 27 QLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL--QKGMIAIEE 85 (128)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH--HTTSSEECC
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 3456777877765443 2 2348999999999999999999999996 668887754
No 72
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=79.98 E-value=1.7 Score=37.52 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=43.0
Q ss_pred EEEEecHHHHHHHHHhhC-----CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 417 IELIISTYHAAILDLFNA-----SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 417 ~~l~vs~~Q~~ILllFN~-----~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
.++-+|.-++.+|+.+-. ....|.++|++.+|++..++.+.|+.|. +.++|..
T Consensus 26 ~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~--~KGlI~i 83 (135)
T 2v79_A 26 KQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFI--QKGFLFI 83 (135)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHH--HHTSCEE
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 356778889888876543 4568999999999999999999999997 4566665
No 73
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.97 E-value=1.2 Score=37.75 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=44.2
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le--~~glv~r~~ 84 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLE--RDGIVRRWK 84 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeec
Confidence 578899999888777789999999999999999999999996 567777653
No 74
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=79.79 E-value=1.6 Score=35.76 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+..+..||..+ ..+.+|+.||++.+|++...+.++|..|. +.+++...+
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~~ 68 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQ--ACGLVESVK 68 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEEe
Confidence 35567777777 44579999999999999999999999995 567877654
No 75
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=79.70 E-value=1.5 Score=37.54 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=44.5
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~glv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRME--QQGLITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHH--HHTSEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHH--HCCCEEecc
Confidence 578899999888777799999999999999999999999996 567887654
No 76
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=78.97 E-value=2.2 Score=34.72 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+..+..||..+. ...+|+.||++.+|++...+.++|..|. +.+++....
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~~ 73 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAKR 73 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 345666776665 4578999999999999999999999996 567777553
No 77
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=78.87 E-value=1.9 Score=34.17 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=40.6
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+..+..||..+...+.+|+.||++.+|++...+.++|..|. +.+++.+.
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~--~~gli~~~ 63 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLE--RNGLVKTY 63 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 55677888777656689999999999999999999999996 55777653
No 78
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=78.78 E-value=1.6 Score=37.23 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=44.1
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|..||......+. |..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 84 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLE--AKGLVRRIR 84 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHH--HCCCEEecc
Confidence 467889999988887777 999999999999999999999996 567887654
No 79
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=78.73 E-value=2.2 Score=36.80 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=41.8
Q ss_pred ecHHHHHHHHHhh-CCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFN-ASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN-~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||.... ..+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE--ERGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH--TTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeeC
Confidence 5678999988775 44578999999999999999999999996 668887754
No 80
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=78.11 E-value=2 Score=37.26 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=41.8
Q ss_pred ecHHHHHHHHHh--hCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLF--NASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllF--N~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+|..|..||... +..+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le--~~Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV--RSGLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCEEEee
Confidence 466777777554 455679999999999999999999999996 668888764
No 81
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=78.06 E-value=1 Score=38.79 Aligned_cols=51 Identities=4% Similarity=0.118 Sum_probs=37.3
Q ss_pred ecHHHHHHHHHhhCC--CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNAS--NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~--~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||...... +.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 91 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE--KKGYIERRI 91 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH--HTTSBCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEeeC
Confidence 577888888877665 789999999999999999999999996 667887664
No 82
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=77.66 E-value=2.4 Score=38.02 Aligned_cols=66 Identities=6% Similarity=0.119 Sum_probs=43.6
Q ss_pred ecCceEEEEEEEcCceEEEEecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 401 YSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 401 ~~lg~~~l~~~~~~~~~~l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
|+.+++.+...-. -...++..+..||.+......+|+.||++.+|++...+.+.|..|. +.+++..
T Consensus 8 ~~~~~~~~~~~~~---m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~--~~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGSH---MRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLR--ESGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSSCC
T ss_pred ccccccccccccc---cccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEe
Confidence 4455565554321 1235788888999888888899999999999999999999999996 4566654
No 83
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=77.38 E-value=6.5 Score=34.75 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=35.9
Q ss_pred HHHHHHHhhC-CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 425 HAAILDLFNA-SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 425 Q~~ILllFN~-~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
.+++.+.-+. ...+|.++|++.+++|...+.+.|..|. +.+++...
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~ 77 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSI 77 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEe
Confidence 3444444443 3469999999999999999999999995 67888754
No 84
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=77.28 E-value=3.1 Score=36.16 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=43.2
Q ss_pred ecHHHHHHHHHhhC-CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNA-SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~-~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+|..|..||..... .+..+..||++.++++...+.+.+..|. +.+++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le--~~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE--EKGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH--hCCCeEeec
Confidence 57889999887764 5678889999999999999999999996 668887764
No 85
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=76.76 E-value=2.2 Score=39.49 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=44.9
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le--~~GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE--ERGYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 578899999888777889999999999999999999999996 668887764
No 86
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=76.65 E-value=3.3 Score=31.67 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=36.4
Q ss_pred HHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 428 ILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 428 ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..+.+.+..|..+|+..+|++...+.++|-+|. +.+-+.+.|
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~--kkG~V~~~~ 63 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ--KEDTVKMVP 63 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH--HCCCEecCC
Confidence 35566677789999999999999999999999996 556666655
No 87
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=76.58 E-value=2.4 Score=38.42 Aligned_cols=51 Identities=8% Similarity=0.139 Sum_probs=44.1
Q ss_pred ecHHHHHHHHHhhC--CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNA--SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~--~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+|..|..||..... .+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE--KNGYVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 78899999987764 5689999999999999999999999996 668887754
No 88
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=76.13 E-value=1.7 Score=35.56 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=37.3
Q ss_pred HHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 425 HAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 425 Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+..||..+.+ +.+|+.||++.+|++...+.++|..|. +.+++...+
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~~ 72 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALK--SGGLVEARR 72 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 4456666654 678999999999999999999999995 567887654
No 89
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=75.91 E-value=6.7 Score=33.89 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=34.8
Q ss_pred HHHHHHhhCC-CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 426 AAILDLFNAS-NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 426 ~~ILllFN~~-~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+.+.+.-+.. ..+|.++|++.+|+|...+.+.|..|. +.+++...
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~ 61 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSV 61 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEec
Confidence 3344443433 469999999999999999999999995 67887654
No 90
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=75.58 E-value=3.7 Score=35.57 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=42.1
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
++..+..||........+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLE--SRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 566788888888877889999999999999999999999996 5677754
No 91
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=75.55 E-value=1.7 Score=37.48 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=43.3
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
.++..|..||... ..+.+|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL--NAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH--HTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 4578899999888 77899999999999999999999999996 5678876
No 92
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=75.47 E-value=3.5 Score=33.13 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=44.3
Q ss_pred EEecHHHHHHHHHhhCCCccCHHHHHH-HhCCCHHHHHHHHHHhhhccceeee
Q 043775 419 LIISTYHAAILDLFNASNRLSYSQVIT-QLNLTHDDLVRLLHSLSILYYKILI 470 (554)
Q Consensus 419 l~vs~~Q~~ILllFN~~~~lt~~ei~~-~t~i~~~~l~~~L~sL~~~k~kiL~ 470 (554)
..++.-|..||......+..|..+|++ ..+++...+-+++.+|. +.+++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~--r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLI--KKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHH--TTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHH--HCCCee
Confidence 456788999999888878999999999 99999999999999996 667776
No 93
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=75.37 E-value=1.7 Score=37.91 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=44.2
Q ss_pred ecHHHHHHHHHh-hCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLF-NASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllF-N~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||... ...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le--~~Gli~r~~ 96 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLI--KDGMVVKAM 96 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHH--HHTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeec
Confidence 688899999888 577789999999999999999999999996 568887764
No 94
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=75.33 E-value=3 Score=44.63 Aligned_cols=109 Identities=11% Similarity=0.120 Sum_probs=77.4
Q ss_pred CCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcccCCCcccccc---------------
Q 043775 434 ASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMRGSR--------------- 498 (554)
Q Consensus 434 ~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~F~~~~~ki~--------------- 498 (554)
.++.+|+.+|...|+++...++..|..|. +.+++.-.+.+. ....|.+|.+ .-..+++
T Consensus 30 ~~G~ltL~~I~~~t~L~~~~Vk~~L~vLI--Qh~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk~l~~i~~~~G~~ 102 (534)
T 2xub_A 30 RTGSQPLRVIAHDTGTSLDQVKKALCVLV--QHNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPRYIYTTKTLYSDT 102 (534)
T ss_dssp HHCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETT---TEEEEEECHH--HHHGGGGHHHHHHHHHHHHHHH
T ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHHHHH--hcCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHHHHHHHHHHhcHH
Confidence 35789999999999999999999999996 677776443211 1245666642 2222333
Q ss_pred --cccc---ccccCChHHHHHHHHHHhccC----CCCChHHHHHHHHhhhhhcccccCCC
Q 043775 499 --SLSH---HRKVLGHQQLVSECIELLGRM----FKPAVKAFKKRIEGLISQDYLERYPE 549 (554)
Q Consensus 499 --RiMK---~~k~l~~~~L~~ev~~~l~~~----F~~~~~~iK~~Ie~LIereyl~Rd~~ 549 (554)
.||. ..+.++.++|+..+...+... =.+++..+...+..|++.+||.|.+.
T Consensus 103 a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 103 GELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 2332 267788889988887665321 12578899999999999999999764
No 95
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=75.08 E-value=4 Score=35.28 Aligned_cols=48 Identities=10% Similarity=0.219 Sum_probs=41.1
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
+..+..||.....+..+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLE--KDGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEE
Confidence 34567788888888899999999999999999999999996 5677764
No 96
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=74.18 E-value=3 Score=39.72 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=43.1
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
++..|..||..+...+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le--~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELK--KFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 466788999887777789999999999999999999999996 56777764
No 97
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=73.22 E-value=3.8 Score=32.98 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=42.8
Q ss_pred EecHHHHHHHHHhhCC------CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNAS------NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~------~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
-+++.|..+|..+... ..+++.+|++.++++...|.++|..|. +.+++...+
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe--~~GLV~r~~ 70 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ--AAGLADVSV 70 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH--HCCCEEeec
Confidence 3678899998866544 679999999999999999999999995 567776543
No 98
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=72.92 E-value=4.1 Score=36.12 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 425 HAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 425 Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
.+.+.|.-+....+|.++|++.+++|...+.+.|..|. +.+++...
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s~ 61 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTGT 61 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEee
Confidence 44444555555679999999999999999999999995 67777654
No 99
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=72.82 E-value=4.9 Score=34.56 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=41.0
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
++..+-.||....+...+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLE--SFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEE
Confidence 355677788888877889999999999999999999999996 4566654
No 100
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=72.38 E-value=4.1 Score=33.67 Aligned_cols=47 Identities=11% Similarity=0.232 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 423 TYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 423 ~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
..|..||..+.+ +..|+.+|++.+|++...+.++|..|. +.+++...
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le--~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLR--NLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHH--HHCSEEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 567778877766 679999999999999999999999996 46666544
No 101
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=71.28 E-value=4.2 Score=38.47 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=44.6
Q ss_pred HHHHHHhhCCC-ccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcccC
Q 043775 426 AAILDLFNASN-RLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKF 490 (554)
Q Consensus 426 ~~ILllFN~~~-~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~F 490 (554)
..||.+|...+ .+|+.||++.+|++...+.+.|..|. +.+.+.+.+. +..|.+...+
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~~------~~~Y~lg~~~ 66 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALGP------AGGFRLGPAL 66 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECGG------GCEEEECSHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeCC------CCeEEECHHH
Confidence 35777887654 79999999999999999999999996 6788877642 3467665543
No 102
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=70.80 E-value=5.3 Score=34.61 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=41.8
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
++..+..||.+..+...+|+.||++.+|++...+.+.|..|. +.+++..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMK--QAGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HHTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HcCCcce
Confidence 556777888888888899999999999999999999999996 4566654
No 103
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=70.62 E-value=11 Score=31.61 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=31.5
Q ss_pred CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 435 SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 435 ~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
...+|..+|++.+|+|...+.+.|..|. +.+++...
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~ 59 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSI 59 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEec
Confidence 4579999999999999999999999996 67787654
No 104
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=70.57 E-value=6.5 Score=28.28 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCccCHHHHHHHh-----CCCHHHHHHHHHHh
Q 043775 425 HAAILDLFNASNRLSYSQVITQL-----NLTHDDLVRLLHSL 461 (554)
Q Consensus 425 Q~~ILllFN~~~~lt~~ei~~~t-----~i~~~~l~~~L~sL 461 (554)
+..|+.+.+..+.+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 45566666777899999999999 99999999999955
No 105
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=70.37 E-value=3.3 Score=34.46 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=44.4
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhC----CCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLN----LTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~----i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.+|..|..||...-+.+.+|..||++.++ ++...+.+.|..|. +.+++.+.+
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~R~~ 62 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLY--KKEIIKRYK 62 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HCCceEEEe
Confidence 46889999998887788999999999997 57999999999996 567887764
No 106
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=70.32 E-value=5.7 Score=34.37 Aligned_cols=49 Identities=20% Similarity=0.410 Sum_probs=41.7
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
++..+..||.++.+...+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLK--KLGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHH--HHTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 456777888888888899999999999999999999999996 4566653
No 107
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=70.29 E-value=2.5 Score=35.09 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=44.0
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhC----CCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLN----LTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~----i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|..||......+.+|..+|++.++ ++...+.+.|..|. +.+++.+.+
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~--~~Glv~r~~ 62 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLY--KKGFIDRKK 62 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHTSEEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH--HCCCeEEEe
Confidence 46788999998877778899999999999 78999999999996 567887654
No 108
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=70.25 E-value=3.8 Score=39.29 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=45.4
Q ss_pred HHHHHHhhC-CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcccC
Q 043775 426 AAILDLFNA-SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKF 490 (554)
Q Consensus 426 ~~ILllFN~-~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~F 490 (554)
..||.+|.. ...+|+.||++.+|++...+.+.|..|. ..+.|.+.+. +..|.+-..+
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~--~~G~v~~~~~------~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQ--EAGFVEQVEG------ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHH--HTTSEEECSS------SSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEcCC------CCcEEcCHHH
Confidence 357888886 4689999999999999999999999996 5788887653 3566665544
No 109
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=70.19 E-value=3.9 Score=34.86 Aligned_cols=49 Identities=12% Similarity=0.282 Sum_probs=40.5
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+..+..||..+.....+|+.||++.+|++...+.+.|..|. +.+++.+.
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~~ 51 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALE--EKGIIEGY 51 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HHTSSCCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEecc
Confidence 34567788888777889999999999999999999999996 45777543
No 110
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=69.89 E-value=6.4 Score=33.58 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=44.0
Q ss_pred ecHHHHHHHHHhhC-CCccCHHHHHHHhC----CCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNA-SNRLSYSQVITQLN----LTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~-~~~lt~~ei~~~t~----i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+|..|..||...-+ .+.+|..||++.++ ++...+.+.|..|. +.+++.+.+
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~r~~ 62 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA--KKNLVLQIR 62 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH--HCCCEEEEe
Confidence 57889999988877 58899999999998 89999999999996 567887764
No 111
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=69.83 E-value=5.8 Score=34.45 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=35.9
Q ss_pred HHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 425 HAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 425 Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
.+.+.+.-+....+|.++|++.+++|...+.+.|..|. +.+++...
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s~ 63 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVN 63 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEc
Confidence 33444444444579999999999999999999999995 67887654
No 112
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=69.45 E-value=8.3 Score=28.47 Aligned_cols=40 Identities=5% Similarity=0.215 Sum_probs=33.1
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
++.-|..|+.++ ...+|.+||++.+|++...+..++..+.
T Consensus 12 L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 12 LTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567778888777 4567999999999999999988887764
No 113
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=69.13 E-value=5.4 Score=33.09 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=39.4
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++.+..||..+.+ ...++.||++.+|++...+.++|..|. +.+++....
T Consensus 20 ~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~~ 68 (118)
T 2jsc_A 20 DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLR--GCGLVVATY 68 (118)
T ss_dssp SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHT--TTTSEEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEEE
Confidence 4556677766664 468999999999999999999999995 567877653
No 114
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=69.01 E-value=5.9 Score=35.34 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=43.0
Q ss_pred EEecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 419 LIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 419 l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
..++..+..||.+......+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 13 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~--~~G~I~~ 63 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQ--ERGVIER 63 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEe
Confidence 45677888899888888899999999999999999999999996 4566653
No 115
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=68.82 E-value=3.6 Score=35.40 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=27.0
Q ss_pred HHHhccCCCCChHHHHHHHHhhhhhccccc
Q 043775 517 IELLGRMFKPAVKAFKKRIEGLISQDYLER 546 (554)
Q Consensus 517 ~~~l~~~F~~~~~~iK~~Ie~LIereyl~R 546 (554)
.+.++.+...++..|-+.|..|+++|||+|
T Consensus 54 ~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 54 PNQLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 356777888999999999999999999999
No 116
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=68.06 E-value=5.8 Score=34.35 Aligned_cols=49 Identities=8% Similarity=0.210 Sum_probs=41.6
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
++..+..||.+...+..+|+.||++.+|++...+.+.|..|. +.+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLR--ESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHH--HHTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEE
Confidence 456777888888888899999999999999999999999996 4566654
No 117
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=67.81 E-value=7 Score=34.29 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=41.6
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
++..+..||....+...+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLE--DAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEee
Confidence 456677888888888889999999999999999999999996 5566654
No 118
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.80 E-value=11 Score=30.21 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=43.7
Q ss_pred EEecHHHHHHHHHhhC--CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 419 LIISTYHAAILDLFNA--SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 419 l~vs~~Q~~ILllFN~--~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
-.++..|..|+-+..+ ++.++..||...|+|+...+.+.|..|.. .+++...
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~--k~lIK~V 86 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKAV 86 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--CCCEEEe
Confidence 3568899999988876 66799999999999999999999999963 4566554
No 119
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=67.27 E-value=7.8 Score=32.39 Aligned_cols=48 Identities=13% Similarity=0.249 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 423 TYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 423 ~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
..+..||..+.+ +.+++.||++.+|++...+.++|..|. +.+++....
T Consensus 46 ~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le--~~Glv~~~~ 93 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLR--NLRLVSYRK 93 (122)
T ss_dssp HHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 345667766654 579999999999999999999999996 467776543
No 120
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=67.09 E-value=8.5 Score=33.21 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 425 HAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 425 Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
.+++.+.-+.. . |.++|++.+++|...|.+.|..|. +.+++...
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~ 56 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSR 56 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEee
Confidence 34444444444 5 999999999999999999999995 77888754
No 121
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=67.09 E-value=2.6 Score=37.15 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=40.5
Q ss_pred ecHHHHHHHHHhhC--CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNA--SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~--~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||..... .+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 96 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD--DRGLVLRTR 96 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEeecC
Confidence 57789988887766 4689999999999999999999999996 668887754
No 122
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=67.06 E-value=5.3 Score=38.69 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=37.5
Q ss_pred HHHHHHhhCCC-ccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 426 AAILDLFNASN-RLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 426 ~~ILllFN~~~-~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
..||.+|.+.. .+|+.||++.+|+|...+.+.|..|. ..+.|.+.+
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~--~~G~v~~~~ 79 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMT--ELDLLARSA 79 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHH--HTTSEEECT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEECC
Confidence 35888898654 69999999999999999999999996 568888764
No 123
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=66.95 E-value=9.2 Score=29.38 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=32.9
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
++.-|..|+.++ ...+|.+||++.+|++...++.++....
T Consensus 22 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 22 LTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 566777777776 4678999999999999999998887664
No 124
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=66.24 E-value=7.1 Score=31.69 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=33.3
Q ss_pred HhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 431 LFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 431 lFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
++...+.+|..+|++.+|++...+.++|..|. ..+++...
T Consensus 27 l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~--~~GlV~~~ 66 (110)
T 1q1h_A 27 LLDKGTEMTDEEIANQLNIKVNDVRKKLNLLE--EQGFVSYR 66 (110)
T ss_dssp HHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHH--HHTSCEEE
T ss_pred HHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 34556579999999999999999999999996 56777655
No 125
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=65.93 E-value=5.5 Score=31.88 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=36.1
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
++....||..+-..+.+|+.||++.+|++...+.++|..|. .. ++...
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~--~~-lv~~~ 73 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR--GK-VLKRN 73 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB--TT-TBEEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HH-hhhhe
Confidence 44555666333334679999999999999999999999995 45 66544
No 126
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=65.42 E-value=5.5 Score=30.69 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=26.0
Q ss_pred HhccCCCCChHHHHHHHHhhhhhcccccC
Q 043775 519 LLGRMFKPAVKAFKKRIEGLISQDYLERY 547 (554)
Q Consensus 519 ~l~~~F~~~~~~iK~~Ie~LIereyl~Rd 547 (554)
+|..+|.+++..|.+-++.|.++|+|+|.
T Consensus 21 eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 21 QISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34456999999999999999999999997
No 127
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=65.41 E-value=16 Score=28.33 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=32.3
Q ss_pred HHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhh
Q 043775 427 AILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSI 463 (554)
Q Consensus 427 ~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~ 463 (554)
.|--+.|+...+|+++|++.||++++++..+|--|+.
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 4555677778999999999999999999999999974
No 128
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=65.29 E-value=9.7 Score=29.98 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=35.4
Q ss_pred EEEecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 418 ELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 418 ~l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
...+|.-|.-||.++- ..+|.+||++.+|++...++.++..+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456778888887776 578999999999999999999988875
No 129
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=64.92 E-value=6.1 Score=31.18 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=36.8
Q ss_pred HHHHHHHhhCCC-ccCHHHHHHHhCCCHHH-HHHHHHHhhhccceeeee
Q 043775 425 HAAILDLFNASN-RLSYSQVITQLNLTHDD-LVRLLHSLSILYYKILIK 471 (554)
Q Consensus 425 Q~~ILllFN~~~-~lt~~ei~~~t~i~~~~-l~~~L~sL~~~k~kiL~~ 471 (554)
+..+|..+...+ .+|..||++.++++... +.+.|..|. +.+++..
T Consensus 17 ~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le--~~Glv~~ 63 (95)
T 2pg4_A 17 ILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLI--RAGLVKE 63 (95)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHH--HTTSEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHH--HCCCeec
Confidence 455677776665 89999999999999999 999999996 5566653
No 130
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=63.92 E-value=8.7 Score=33.12 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=37.5
Q ss_pred ecHHHHHHHHHhhCC-----CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeee
Q 043775 421 ISTYHAAILDLFNAS-----NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILI 470 (554)
Q Consensus 421 vs~~Q~~ILllFN~~-----~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~ 470 (554)
++..|..||...... +.+|..||++.++++...+.+.+..|. +.+++.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le--~~glVr 83 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMR--RDGLVR 83 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHH--HTTSBC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEE
Confidence 577899988777654 359999999999999999999999996 456663
No 131
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=63.72 E-value=6.1 Score=32.67 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcc
Q 043775 423 TYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNS 488 (554)
Q Consensus 423 ~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~ 488 (554)
+....||.+..+ +.+|+.||++.+|++...+.++|..|. +.+++.....|+ ...|.++.
T Consensus 18 ~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~~~gr----~~~y~l~~ 76 (118)
T 3f6o_A 18 PTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTHKQGR----VRTCAIEK 76 (118)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEEEETT----EEEEEECS
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEEecCC----EEEEEECH
Confidence 445566665554 678999999999999999999999995 578887654321 23566654
No 132
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=63.66 E-value=7.4 Score=37.12 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=44.0
Q ss_pred EecHHHHHHHHHhhCCC--ccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLFNASN--RLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~--~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.+|..|..||......+ .+|..||++.++++...+.+.+..|. +.+++.+.+
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe--~~GlV~R~~ 208 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK--KQGYLIKER 208 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeeC
Confidence 35788999998776654 59999999999999999999999996 668888764
No 133
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=61.91 E-value=12 Score=27.96 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=31.9
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
+|.-|..|+.++ ...+|.+||++.+|++...+..++....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355666777776 5678999999999999999988877663
No 134
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=61.52 E-value=2.1 Score=34.75 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=43.1
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhC----CCHHHHHHHHHHhhhccceeeeecCCC
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLN----LTHDDLVRLLHSLSILYYKILIKEPDT 475 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~----i~~~~l~~~L~sL~~~k~kiL~~~~~~ 475 (554)
.++..|..||...-+.+.+|..||++.++ ++...+.+.|..|. +.+++.+.+.|
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe--~KGlV~R~~~g 89 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLV--KKEMLSTEKEG 89 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH--HTTSCEEEEET
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH--HCCCEEEEeCC
Confidence 35677888887776677899999999997 46889999999996 56788776543
No 135
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=61.02 E-value=11 Score=29.93 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=33.8
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
.++.-|.-|+.++ ...+|.+||++.+|++...++.++....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3677788888776 5678999999999999999988877664
No 136
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=60.71 E-value=6.7 Score=40.93 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=46.3
Q ss_pred EEecHHHHHHHHHhhCC--CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 419 LIISTYHAAILDLFNAS--NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 419 l~vs~~Q~~ILllFN~~--~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+.+|..|..||....++ +.+|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~~ 454 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKKR 454 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCEE
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecC
Confidence 34688999999988877 899999999999999999999999996 667887653
No 137
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=60.53 E-value=4.8 Score=34.06 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=24.9
Q ss_pred HhccCCCCChHHHHHHHHhhhhhcccccCC
Q 043775 519 LLGRMFKPAVKAFKKRIEGLISQDYLERYP 548 (554)
Q Consensus 519 ~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~ 548 (554)
+++.+...++..|.++|..|+++|||+|..
T Consensus 56 ~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 56 ELAERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 444466778899999999999999999954
No 138
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=59.65 E-value=8.2 Score=36.88 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=37.9
Q ss_pred HHHHHhhC-CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 427 AILDLFNA-SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 427 ~ILllFN~-~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.||.+|.. ...+|+.||++.+|++...+.+.|..|. +.+.+.+.+
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~--~~G~v~~~~ 72 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMC--ARSVLTSRA 72 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEECT
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEECC
Confidence 57777864 4689999999999999999999999996 567887764
No 139
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=59.04 E-value=14 Score=26.89 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=29.0
Q ss_pred ecHHHHHHHHH-h--hCCCccCHHHHHHHhCCCHHHHHHHHHHh
Q 043775 421 ISTYHAAILDL-F--NASNRLSYSQVITQLNLTHDDLVRLLHSL 461 (554)
Q Consensus 421 vs~~Q~~ILll-F--N~~~~lt~~ei~~~t~i~~~~l~~~L~sL 461 (554)
++.-|--|+.+ | +..+.+|++||++.+|++...++..+..-
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555543 3 33467999999999999999888766544
No 140
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=58.73 E-value=10 Score=35.81 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=37.8
Q ss_pred HHHHHHhhCCC-ccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 426 AAILDLFNASN-RLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 426 ~~ILllFN~~~-~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
..||.+|.+.+ .+|+.||++.+|++...+.+.|..|. +.+++.+.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~ 56 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLE--EKGFVLRK 56 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEC
Confidence 45787887654 79999999999999999999999996 56777664
No 141
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=57.74 E-value=6.1 Score=37.71 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=43.8
Q ss_pred EecHHHHHHHHHhhC--CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 420 IISTYHAAILDLFNA--SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~--~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
.+|..|..||+...+ .+.+|..||++.++++...+.+.|..|. +.+++.+.
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe--~~G~i~R~ 83 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV--KHSYISKV 83 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH--HTTSCEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEec
Confidence 468899999988866 4589999999999999999999999996 56777765
No 142
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=56.83 E-value=8.3 Score=33.65 Aligned_cols=49 Identities=8% Similarity=0.178 Sum_probs=40.0
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++....||.+.. ...+|+.||++.+|++...+.++|..|. +.+++....
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~--~aGlV~~~~ 105 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT--EAGLVTPRK 105 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 455677777666 4679999999999999999999999995 577887653
No 143
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=56.82 E-value=15 Score=32.13 Aligned_cols=45 Identities=11% Similarity=0.255 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 425 HAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 425 Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
-..||.+...+..+|+.+|++.+|++...+.+.|..|. +.+++..
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~--~~g~i~~ 49 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKME--EDGVIRR 49 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHH--HTTSSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeee
Confidence 34678888888899999999999999999999999996 4566653
No 144
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=56.14 E-value=16 Score=29.80 Aligned_cols=47 Identities=11% Similarity=0.282 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCCccC--HHHHHHHh-CCCHHHHHHHHHHhhhccceeeeecC
Q 043775 424 YHAAILDLFNASNRLS--YSQVITQL-NLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 424 ~Q~~ILllFN~~~~lt--~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
....||....+ +..+ +.||++.+ |++...+.++|..|. +.+++.+.+
T Consensus 28 wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~~ 77 (111)
T 3df8_A 28 YTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERRS 77 (111)
T ss_dssp THHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred cHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEee
Confidence 34556655553 4445 99999999 999999999999996 678887764
No 145
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=55.81 E-value=13 Score=31.48 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=35.5
Q ss_pred HHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 428 ILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 428 ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
|+.+....+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 13 i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le--~~Glv~r~~ 56 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLD--KDEYLIYEK 56 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEET
T ss_pred HHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEee
Confidence 33344455689999999999999999999999996 567887664
No 146
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=55.81 E-value=7.8 Score=30.59 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=35.7
Q ss_pred ecHHHHHHHHHhh-CCCc---cCHHHHHHHhCCCHHHHHHHHHHhhhccceee
Q 043775 421 ISTYHAAILDLFN-ASNR---LSYSQVITQLNLTHDDLVRLLHSLSILYYKIL 469 (554)
Q Consensus 421 vs~~Q~~ILllFN-~~~~---lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL 469 (554)
++.-+..||+.+- ..+. +|..+|++.++++...+.+.|..|. +.+++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFE--EAKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HTTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCcCc
Confidence 3455666666553 2233 9999999999999999999999996 45666
No 147
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=55.57 E-value=5.7 Score=31.33 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=26.5
Q ss_pred HhccCCCCChHHHHHHHHhhhhhcccccCC
Q 043775 519 LLGRMFKPAVKAFKKRIEGLISQDYLERYP 548 (554)
Q Consensus 519 ~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~ 548 (554)
+|..+|..++..|.+-|+.|.++|+|+|..
T Consensus 21 eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 21 QLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 455579999999999999999999999974
No 148
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=55.25 E-value=17 Score=30.51 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=38.8
Q ss_pred EecHHHHHHHHHh----hCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 420 IISTYHAAILDLF----NASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 420 ~vs~~Q~~ILllF----N~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.++..|.-+|..+ ...+.+|+.+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le--~~Gli~r~~ 65 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLE--EKGLVKKKE 65 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHH--HCCCEEecC
Confidence 3455555554433 345689999999999999999999999996 557777653
No 149
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=54.97 E-value=15 Score=35.11 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=43.4
Q ss_pred HHHHHHhhC-CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcccC
Q 043775 426 AAILDLFNA-SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKF 490 (554)
Q Consensus 426 ~~ILllFN~-~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~F 490 (554)
..||.+|.. ...+|+.||++.+|++...+.+.|..|. ..+.+.+. +..|.+...+
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~--~~G~v~~~--------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLV--ELGYVATD--------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEES--------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEec--------CCEEEEcHHH
Confidence 357888874 5689999999999999999999999996 56777764 2467765544
No 150
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=54.95 E-value=18 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=36.7
Q ss_pred HHHHHHHhhCCCccCHHHHHHHh-CCCHHHHHHHHHHhhhccceeeeecC
Q 043775 425 HAAILDLFNASNRLSYSQVITQL-NLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 425 Q~~ILllFN~~~~lt~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
...||.... .+.+++.||++.+ |++...+.+.|..|. +.+++.+.+
T Consensus 16 ~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le--~~GlI~r~~ 62 (107)
T 2hzt_A 16 KXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELE--ADGVINRIV 62 (107)
T ss_dssp HHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEEee
Confidence 344555444 4679999999999 999999999999996 568887653
No 151
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=54.62 E-value=11 Score=30.77 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCccCHHHHHHHh-CCCHHHHHHHHHHhhhccceeeeecC
Q 043775 424 YHAAILDLFNASNRLSYSQVITQL-NLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 424 ~Q~~ILllFN~~~~lt~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
....||....+ +.+++.||++.+ |++...+.++|..|. +.+++.+.+
T Consensus 23 ~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le--~~GlI~r~~ 70 (112)
T 1z7u_A 23 WKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREME--KDGLVHRES 70 (112)
T ss_dssp THHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHH--HHTSEEEEE
T ss_pred cHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCCEEEee
Confidence 45556654443 679999999999 999999999999996 668887653
No 152
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=54.60 E-value=17 Score=34.50 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=43.9
Q ss_pred HHHHHHHhhC-CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcccC
Q 043775 425 HAAILDLFNA-SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKF 490 (554)
Q Consensus 425 Q~~ILllFN~-~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~F 490 (554)
...||.+|.. ...+|+.||++.+|++...+.+.|..|. ..+.+.+. +..|.+...+
T Consensus 16 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~--~~G~v~~~--------~~~Y~Lg~~~ 72 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQ--KLGYVAGS--------GGRWSLTPRV 72 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE--------TTEEEECGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeC--------CCEEEEcHHH
Confidence 3457888875 4579999999999999999999999996 56777764 2467776554
No 153
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=54.31 E-value=4.2 Score=36.31 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=42.4
Q ss_pred ecHHHHHHHHHhhCCC---ccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFNASN---RLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~---~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
++..|..||......+ .+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 120 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL--EKGLIERRE 120 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH--HHTSEECCC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCEEecC
Confidence 5778998888776544 39999999999999999999999996 567887654
No 154
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=53.63 E-value=13 Score=30.59 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=42.1
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHh--CCCHHHHHHHHHHhhhccceeeeec
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQL--NLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t--~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+....-.||.+......+|+.+|++.+ |++...+.++|..|. +.+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le--~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA--DHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEec
Confidence 455567788888776799999999999 999999999999996 67888764
No 155
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=53.54 E-value=17 Score=29.16 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=25.9
Q ss_pred cHHHH-HHHHHhh--CCCccCHHHHHHHhCCCHHHHHHHH
Q 043775 422 STYHA-AILDLFN--ASNRLSYSQVITQLNLTHDDLVRLL 458 (554)
Q Consensus 422 s~~Q~-~ILllFN--~~~~lt~~ei~~~t~i~~~~l~~~L 458 (554)
+.-|- +|.+.|- +.+.+|++||++.+|++...++..+
T Consensus 21 p~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~ 60 (99)
T 3t72_q 21 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 60 (99)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 44343 4445552 3468999999999999998776543
No 156
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=52.90 E-value=13 Score=34.89 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=35.4
Q ss_pred HHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 426 AAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 426 ~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+.|+.+. .++..|.++|++.+|++..++..+|..|. +.+++.+..
T Consensus 168 ~~l~~~l-~~~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~~~ 212 (232)
T 2qlz_A 168 AILHYLL-LNGRATVEELSDRLNLKEREVREKISEMA--RFVPVKIIN 212 (232)
T ss_dssp HHHHHHH-HSSEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEEET
T ss_pred HHHHHHH-hcCCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEEec
Confidence 3344343 34689999999999999999999999995 778886543
No 157
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=52.68 E-value=18 Score=33.17 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=39.4
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
++.+..||.+.. .+.+|+.||++.+|++...+.++|..|. +.+++...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le--~~GLV~~~ 61 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILE--EAGLIESR 61 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 456677776665 4679999999999999999999999996 56788764
No 158
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=52.55 E-value=23 Score=23.13 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=25.9
Q ss_pred HHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHh
Q 043775 426 AAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSL 461 (554)
Q Consensus 426 ~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL 461 (554)
..|+.++.+ .+|..+|++.+|++...+.+.+...
T Consensus 12 ~~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 345555543 5799999999999999998877543
No 159
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=52.44 E-value=14 Score=26.06 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=26.5
Q ss_pred HHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 427 AILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 427 ~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
-|+.++ .+.+|.+||++.+|++...+..++....
T Consensus 5 ~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 5 QVLKLI--DEGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHH--HTSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHH--HcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344444 3467999999999999999998887764
No 160
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=52.25 E-value=22 Score=32.21 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=40.0
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
.+..+..||.+.. .+.+|+.||++.+|++...+.++|..|. +.+++...
T Consensus 18 ~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le--~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLK--EAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 3556667776666 4689999999999999999999999996 56777765
No 161
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=50.93 E-value=11 Score=29.43 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=31.6
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
++.-|.-|+.++ ...+|.+||++.+|++...++.++....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455666666666 4578999999999999999998887664
No 162
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=50.59 E-value=22 Score=30.17 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=37.5
Q ss_pred HHHHHHHhhCCCccCHHHHHHHh-CCCHHHHHHHHHHhhhccceeeeecC
Q 043775 425 HAAILDLFNASNRLSYSQVITQL-NLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 425 Q~~ILllFN~~~~lt~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.+.||.... .+..++.||++.+ ||+...|.+.|..|. +.+++.+.+
T Consensus 28 ~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le--~~GLV~R~~ 74 (131)
T 4a5n_A 28 KGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELE--ADGIVHREV 74 (131)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHH--HCCCEEEEe
Confidence 445665554 5689999999999 999999999999996 678888763
No 163
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=49.70 E-value=44 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.7
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHH
Q 043775 436 NRLSYSQVITQLNLTHDDLVRLLH 459 (554)
Q Consensus 436 ~~lt~~ei~~~t~i~~~~l~~~L~ 459 (554)
..+|..||++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 457999999999999999888763
No 164
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=49.19 E-value=15 Score=35.07 Aligned_cols=36 Identities=11% Similarity=0.346 Sum_probs=29.4
Q ss_pred HHHHH-HhhCCCccCHHHHHHHhCCCHHHHHHHHHHh
Q 043775 426 AAILD-LFNASNRLSYSQVITQLNLTHDDLVRLLHSL 461 (554)
Q Consensus 426 ~~ILl-lFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL 461 (554)
..|+- +.+..+.+|+++|++.|||..+++..+|+.|
T Consensus 196 ~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 196 DTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 34443 3344568999999999999999999999999
No 165
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=49.16 E-value=25 Score=27.07 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=27.2
Q ss_pred cHHHHHHH-HHh--hCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 043775 422 STYHAAIL-DLF--NASNRLSYSQVITQLNLTHDDLVRLLHS 460 (554)
Q Consensus 422 s~~Q~~IL-llF--N~~~~lt~~ei~~~t~i~~~~l~~~L~s 460 (554)
|.-|--|+ +.| .+.+.+|++||++.+|++...++..+..
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~r 61 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444 433 3346799999999999999887765543
No 166
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=48.64 E-value=24 Score=30.25 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 425 HAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 425 Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
-..||.... .+.+++.||++.+|++...+.++|..|. +.+++.+.+
T Consensus 26 ~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le--~~GlI~r~~ 71 (146)
T 2f2e_A 26 SMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLV--EHGVMVAVP 71 (146)
T ss_dssp HHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEEe
Confidence 344554333 3579999999999999999999999996 678888764
No 167
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=48.15 E-value=20 Score=28.87 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHHhhCCCccCHHHHHHHh-CCCHHHHHHHHHHhhhccceeeeecC
Q 043775 426 AAILDLFNASNRLSYSQVITQL-NLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 426 ~~ILllFN~~~~lt~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
..||.... .+.+++.||++.+ |++...+.++|..|. +.+++.+.+
T Consensus 28 ~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~~ 73 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLC--GKGLIKKKQ 73 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHH--HCCCEEEee
Confidence 34554443 5679999999999 599999999999996 678887653
No 168
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=47.78 E-value=27 Score=25.75 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=26.8
Q ss_pred cHHHHHHH-HHh--hCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 043775 422 STYHAAIL-DLF--NASNRLSYSQVITQLNLTHDDLVRLLHS 460 (554)
Q Consensus 422 s~~Q~~IL-llF--N~~~~lt~~ei~~~t~i~~~~l~~~L~s 460 (554)
+.-|-.|+ +.| .+.+.+|++||++.+|++...+...+..
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444 434 2335799999999999999888775543
No 169
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=47.02 E-value=26 Score=26.79 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=32.6
Q ss_pred HHHHHhhCCCccCHHHHHHHhCC-CHHHHHHHHHHhhh
Q 043775 427 AILDLFNASNRLSYSQVITQLNL-THDDLVRLLHSLSI 463 (554)
Q Consensus 427 ~ILllFN~~~~lt~~ei~~~t~i-~~~~l~~~L~sL~~ 463 (554)
.|--+.|+...+|+.+|++.||+ +++++..+|--|+.
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 45567788889999999999999 99999999999974
No 170
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=46.63 E-value=26 Score=29.54 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=38.2
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHh-CCCHHHHHHHHHHhhhccceeeeecC
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQL-NLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
......||.... .+.+++.||++.+ |++...+.++|..|. +.+++.+.+
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le--~~GlV~r~~ 83 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALE--QDGFLNRVS 83 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHH--HHTCEEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCcEEEEe
Confidence 334455665544 4679999999999 799999999999996 678887653
No 171
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=45.29 E-value=26 Score=28.06 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=32.5
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
+|.-|..||.++- +.+|.+||++.+|++...++..+..+.
T Consensus 35 Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 35 LSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp CCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5667777776664 578999999999999999988887764
No 172
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.79 E-value=33 Score=26.58 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=27.5
Q ss_pred ecHHHHHHHHH-hhCCCccCHHHHHHHhCCCHHHHHHHHHHh
Q 043775 421 ISTYHAAILDL-FNASNRLSYSQVITQLNLTHDDLVRLLHSL 461 (554)
Q Consensus 421 vs~~Q~~ILll-FN~~~~lt~~ei~~~t~i~~~~l~~~L~sL 461 (554)
++.-|--|+.+ | .+.+|+.||++.+|++...++..+...
T Consensus 38 L~~~~r~vl~l~~--~~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 38 LSAEHRAVIQRSY--YRGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp SCHHHHHHHHHHH--TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34455555544 4 346899999999999998887765543
No 173
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=42.17 E-value=13 Score=30.01 Aligned_cols=43 Identities=9% Similarity=0.140 Sum_probs=30.0
Q ss_pred cccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCC
Q 043775 504 RKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPEN 550 (554)
Q Consensus 504 ~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d 550 (554)
...++..||... +...-.++...|...|+.|.++|||+|..+.
T Consensus 47 ~~~~t~~eL~~~----l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~g 89 (99)
T 2k4b_A 47 LGEARVDEIYAQ----IPQELEWSLATVKTLLGRLVKKEMLSTEKEG 89 (99)
T ss_dssp HSCEEHHHHHHT----CCGGGCCCHHHHHHHHHHHHHTTSCEEEEET
T ss_pred CCCCCHHHHHHH----HhcccCCCHhhHHHHHHHHHHCCCEEEEeCC
Confidence 445555555543 3322245788999999999999999997643
No 174
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=42.14 E-value=41 Score=24.12 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=27.5
Q ss_pred ecHHHHHHHHH-hhCCCccCHHHHHHHhCCCHHHHHHHHHHh
Q 043775 421 ISTYHAAILDL-FNASNRLSYSQVITQLNLTHDDLVRLLHSL 461 (554)
Q Consensus 421 vs~~Q~~ILll-FN~~~~lt~~ei~~~t~i~~~~l~~~L~sL 461 (554)
++.-|-.|+.+ |- +.+|++||++.+|++...+.+.+...
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555543 43 35899999999999998887766544
No 175
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=41.65 E-value=28 Score=31.54 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=36.0
Q ss_pred HHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 424 YHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 424 ~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
-|-.||-+.+++..+|++||++.+++++..+.+=|.-|.
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~ 51 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLN 51 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhc
Confidence 367899999999999999999999999999999999886
No 176
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=41.11 E-value=12 Score=28.63 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=22.5
Q ss_pred CCCChHHHHHHHHhhhhhcccccCCCCC
Q 043775 524 FKPAVKAFKKRIEGLISQDYLERYPENP 551 (554)
Q Consensus 524 F~~~~~~iK~~Ie~LIereyl~Rd~~d~ 551 (554)
|..++..|.+-+..|-++|||+|+.+.+
T Consensus 34 lgvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 34 AGLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred HCCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 3346667889999999999999987644
No 177
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=40.65 E-value=26 Score=33.66 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 434 ASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 434 ~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
..+.+|++||++.|||..+++..+|+.|-
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l~ 239 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHLR 239 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 34689999999999999999999999993
No 178
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=39.69 E-value=14 Score=30.73 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=23.9
Q ss_pred CCCCChHHHHHHHHhhhhhcccccC--CCCCC
Q 043775 523 MFKPAVKAFKKRIEGLISQDYLERY--PENPN 552 (554)
Q Consensus 523 ~F~~~~~~iK~~Ie~LIereyl~Rd--~~d~~ 552 (554)
++..+.+.+-+.|..|.++|||+|. +.|+.
T Consensus 62 ~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 93 (127)
T 2frh_A 62 HLNYKQPQVVKAVKILSQEDYFDKKRNEHDER 93 (127)
T ss_dssp HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 3556788899999999999999994 44543
No 179
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=39.22 E-value=24 Score=33.85 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=24.7
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 437 RLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 437 ~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
.+|++||++.|||..+++..+|+.|-
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 79999999999999999999999993
No 180
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=37.48 E-value=19 Score=34.56 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=24.3
Q ss_pred HHHHHh-hCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 427 AILDLF-NASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 427 ~ILllF-N~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
.|+-.+ +..+.+|++||++.|||..+++..+|+.|-
T Consensus 197 ~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 233 (278)
T 2pq8_A 197 VLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLN 233 (278)
T ss_dssp HHHHHTC-------CHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHCC
Confidence 444333 334589999999999999999999999993
No 181
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=36.16 E-value=75 Score=29.37 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=61.6
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCceeEEeecCceEEEEEEEcCceEEEEe-----cHHHHHHHHHhhCCCccCHHHHHHH
Q 043775 372 NLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELII-----STYHAAILDLFNASNRLSYSQVITQ 446 (554)
Q Consensus 372 ~lP~~l~~~~~~F~~fY~~k~~~RkL~W~~~lg~~~l~~~~~~~~~~l~v-----s~~Q~~ILllFN~~~~lt~~ei~~~ 446 (554)
.=|..+..+.+.++. ||.+---.+|+++.+.++. +..|..||-+......+|..++++.
T Consensus 114 VSp~Dl~~A~~~l~~----------------Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~g~vt~~~la~~ 177 (218)
T 3cuq_B 114 LSPEDLVNACKMLEA----------------LKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKL 177 (218)
T ss_dssp CCHHHHHHHHHTTTT----------------TTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHTSCBCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----------------cCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 568889888887654 3433222345545554543 3588999887788889999999999
Q ss_pred hCCCHHHHHHHHHHhhhccceeeeec
Q 043775 447 LNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 447 t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
.|.+....+..|..+. +.+++...
T Consensus 178 l~ws~~~a~e~L~~~e--~~G~l~~D 201 (218)
T 3cuq_B 178 VGMSVLLAKERLLLAE--KMGHLCRD 201 (218)
T ss_dssp HTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred hCCCHHHHHHHHHHHH--HcCCEEEE
Confidence 9999999999999885 56788775
No 182
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=36.07 E-value=12 Score=28.56 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=24.1
Q ss_pred CCCChHHHHHHHHhhhhhcccccCCCCCC
Q 043775 524 FKPAVKAFKKRIEGLISQDYLERYPENPN 552 (554)
Q Consensus 524 F~~~~~~iK~~Ie~LIereyl~Rd~~d~~ 552 (554)
+..+...|.++|..|.+.|+|+|.++.+.
T Consensus 41 Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~ 69 (77)
T 1qgp_A 41 LGTPKKEINRVLYSLAKKGKLQKEAGTPP 69 (77)
T ss_dssp HCCCHHHHHHHHHHHHHHTSEEEECSSSC
T ss_pred HCcCHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 34677889999999999999999776553
No 183
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=35.93 E-value=18 Score=27.45 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=31.0
Q ss_pred cccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCC
Q 043775 504 RKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPEN 550 (554)
Q Consensus 504 ~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d 550 (554)
...++..+|...+-.. -..+...+...|+.|.++|||+|..++
T Consensus 21 ~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~g 63 (82)
T 1p6r_A 21 HSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKEG 63 (82)
T ss_dssp SSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEecC
Confidence 4456666666555321 235788899999999999999997643
No 184
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=35.53 E-value=49 Score=25.26 Aligned_cols=36 Identities=14% Similarity=0.336 Sum_probs=30.8
Q ss_pred HHHHHhhC-CCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 427 AILDLFNA-SNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 427 ~ILllFN~-~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
.||-.+.+ ...++..+|++.+|++.+++.++|..|.
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46665655 4689999999999999999999999995
No 185
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.01 E-value=51 Score=27.76 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=46.7
Q ss_pred EecHHHHHHHHHhhCC--CccCHHHHHHHh-----CCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEc
Q 043775 420 IISTYHAAILDLFNAS--NRLSYSQVITQL-----NLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELN 487 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~--~~lt~~ei~~~t-----~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N 487 (554)
.++.-...||-.+.+. ..+|.+||.+.+ +++...+-|+|..|. ..+++.+...+. ....|.++
T Consensus 15 r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~~---~~~~Y~~~ 84 (136)
T 1mzb_A 15 KVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFE--AAGLVVRHNFDG---GHAVFELA 84 (136)
T ss_dssp CCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEECSSS---SSCEEEES
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH--HCCcEEEEEeCC---CceEEEeC
Confidence 4566777888777653 579999999998 899999999999996 567887653211 12457664
No 186
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=34.98 E-value=12 Score=32.01 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=26.3
Q ss_pred ccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccc----CCCCCC
Q 043775 503 HRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLER----YPENPN 552 (554)
Q Consensus 503 ~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~R----d~~d~~ 552 (554)
....++..+|-.. ...+.+.+-+.|..|.++|||+| ++.|+.
T Consensus 48 ~~~~~t~~eLa~~--------l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 48 SIEALTVGQITEK--------QGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHSCBCHHHHHHH--------HCSCSSHHHHHHHHHHHTTSEEC----------
T ss_pred HcCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 4445565555433 23566779999999999999998 666654
No 187
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.91 E-value=52 Score=28.08 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=47.7
Q ss_pred EecHHHHHHHHHhhC-CCccCHHHHHHHh-----CCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcc
Q 043775 420 IISTYHAAILDLFNA-SNRLSYSQVITQL-----NLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNS 488 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~-~~~lt~~ei~~~t-----~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~ 488 (554)
.++.-...||-.+.+ ...+|.+||.+.+ +++...+-|+|..|. ..+++.+...+. ....|.++.
T Consensus 19 r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~~---~~~~Y~~~~ 88 (145)
T 2fe3_A 19 RITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR--ESGLVKELTYGD---ASSRFDFVT 88 (145)
T ss_dssp CCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH--HTTSEEEECCTT---SCCEEEECC
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH--HCCCEEEEeeCC---CceEEECCC
Confidence 456777788877754 5679999999999 899999999999996 568887653211 134577653
No 188
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=34.50 E-value=18 Score=30.02 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=70.5
Q ss_pred HHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcccCCCccccccccccccccC
Q 043775 428 ILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMRGSRSLSHHRKVL 507 (554)
Q Consensus 428 ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~F~~~~~ki~RiMK~~k~l 507 (554)
|+-.|.. +..++.|+++.+|++++.+...|..|. +.+.|.+.+ .+.|.-...+..-...|+.+++....+
T Consensus 12 i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~--~~G~l~~i~-------~~~~~~~~~~~~~~~~l~~~~~~~~~i 81 (121)
T 2pjp_A 12 AEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAA--QQGIITAIV-------KDRYYRNDRIVEFANMIRDLDQECGST 81 (121)
T ss_dssp HGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEE-------TTEEEEHHHHHHHHHHHHHHHHHHSSE
T ss_pred HHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEec-------CCceECHHHHHHHHHHHHHHHHHCCCc
Confidence 3444543 567999999999999999999999886 445554432 355555444444444455666667777
Q ss_pred ChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCC
Q 043775 508 GHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPEN 550 (554)
Q Consensus 508 ~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d 550 (554)
+..++-..+ ..+......-+|.|=..++-.|.++.
T Consensus 82 t~ae~Rd~l--------g~sRK~ai~lLE~~Dr~g~TrR~gd~ 116 (121)
T 2pjp_A 82 CAADFRDRL--------GVGRKLAIQILEYFDRIGFTRRRGND 116 (121)
T ss_dssp EHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEEETTE
T ss_pred cHHHHHHHH--------CCcHHHHHHHHHHHhhcCCeEeeCCE
Confidence 776665544 24555566778888888888887653
No 189
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=34.06 E-value=58 Score=25.65 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=34.7
Q ss_pred HHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 426 AAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 426 ~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+-||-.... + ++..+|+..+|+++..+.+.+..|. +.+++.+.
T Consensus 11 ~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~--~~GLI~~~ 53 (95)
T 1r7j_A 11 QAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLM--DLEIIRQE 53 (95)
T ss_dssp HHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 345555554 3 9999999999999999999999995 56788765
No 190
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=33.51 E-value=29 Score=27.93 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=35.6
Q ss_pred HHHHhhCCCcc-CHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 428 ILDLFNASNRL-SYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 428 ILllFN~~~~l-t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
|+-.+...+.+ |..+|++.+|++...+.++|.-|. ..+++...+
T Consensus 33 I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~--~~GlI~~~~ 77 (102)
T 2b0l_A 33 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLE--SAGVIESRS 77 (102)
T ss_dssp HTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 44455556667 999999999999999999999996 567777665
No 191
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=33.39 E-value=44 Score=28.26 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=28.3
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHS 460 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~s 460 (554)
+|.-|-.|+..+ .+.+|++||++.+|++...++..+.-
T Consensus 110 L~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 110 FSKFEKEVLTYL--IRGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 455666666643 46789999999999999888765543
No 192
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=32.05 E-value=57 Score=29.27 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=37.5
Q ss_pred ecHHHHHHHHHhh----C-CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 421 ISTYHAAILDLFN----A-SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 421 vs~~Q~~ILllFN----~-~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+|.-|.-||.... + ....|+.||++.+|++...+.++|..|. +.+.+.+.+
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le--~~G~i~~~~ 58 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALE--KKGYIERKN 58 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC-
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHH--HCCCEEecC
Confidence 3556777765443 2 2368999999999999999999999996 456666543
No 193
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=31.89 E-value=49 Score=28.18 Aligned_cols=41 Identities=12% Similarity=0.271 Sum_probs=33.1
Q ss_pred HhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 431 LFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 431 lFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.....+.+|..+|++.+|++...+.++|..|. +.+++.+.+
T Consensus 48 ~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le--~~Glv~r~~ 88 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGVSQPTVAKMLKRLA--TMGLIEMIP 88 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHH--HTTCEEEET
T ss_pred HHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHH--HCCCEEEec
Confidence 33344678999999999999999999999996 457777654
No 194
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=31.72 E-value=49 Score=30.32 Aligned_cols=45 Identities=13% Similarity=0.327 Sum_probs=37.2
Q ss_pred HHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 427 AILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 427 ~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+|+.+-.+.+.++..+|++.++++...+.++|..|. +.+++.+.+
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le--~~GlV~r~~ 54 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL--AEELLIKDK 54 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEEec
Confidence 344444567789999999999999999999999996 568887765
No 195
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=31.60 E-value=29 Score=28.42 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHhhhhhcccccCCCC
Q 043775 525 KPAVKAFKKRIEGLISQDYLERYPEN 550 (554)
Q Consensus 525 ~~~~~~iK~~Ie~LIereyl~Rd~~d 550 (554)
.++...+...|+.|.++|||+|..++
T Consensus 39 ~~~~~Tvt~~l~rLe~kGlv~R~~~~ 64 (126)
T 1sd4_A 39 EVSDKTIRTLITRLYKKEIIKRYKSE 64 (126)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCChhhHHHHHHHHHHCCceEEEeCC
Confidence 45788999999999999999997653
No 196
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=31.45 E-value=30 Score=27.28 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=22.8
Q ss_pred hccCCCCChHHHHHHHHhhhhhccccc
Q 043775 520 LGRMFKPAVKAFKKRIEGLISQDYLER 546 (554)
Q Consensus 520 l~~~F~~~~~~iK~~Ie~LIereyl~R 546 (554)
|..+...+...+.++|..|.+++||+|
T Consensus 42 La~~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 42 VRYKSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 344566788999999999999999995
No 197
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=31.41 E-value=19 Score=28.67 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=34.4
Q ss_pred HhhCCCcc-CHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 431 LFNASNRL-SYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 431 lFN~~~~l-t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
.+...+.+ |..+|++.+|++...+.++|..|. ..+++...+
T Consensus 28 ~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~--~~Gli~~~~ 69 (102)
T 1v4r_A 28 ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLK--SEGLVSSRG 69 (102)
T ss_dssp SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT--TSSCCEEET
T ss_pred CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeC
Confidence 34556677 999999999999999999999995 567887665
No 198
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.41 E-value=68 Score=26.74 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=39.9
Q ss_pred ecHHHHHHHHHhh-CCCccCHHHHHHHh-----CCCHHHHHHHHHHhhhccceeeeec
Q 043775 421 ISTYHAAILDLFN-ASNRLSYSQVITQL-----NLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 421 vs~~Q~~ILllFN-~~~~lt~~ei~~~t-----~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+|.--..||-.|. ..+.+|.+||.+.+ +++...+-|+|..|. ..+++.+.
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~--e~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMA--SSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH--TTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCEEEE
Confidence 3455567776665 45689999999998 899999999999996 56788764
No 199
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=31.33 E-value=73 Score=32.10 Aligned_cols=64 Identities=8% Similarity=0.061 Sum_probs=44.2
Q ss_pred HHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCC---CCCCCCCeEEEcccCC
Q 043775 426 AAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDT---KSISRSDYFELNSKFT 491 (554)
Q Consensus 426 ~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~---~~~~~~d~f~~N~~F~ 491 (554)
..||-+...+..+|..||++.||++...+.+.+..|. ..+++...+.. ..=.+...+.+|.++.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~--~~g~i~~~~~~~~~~~GR~~~~l~~~~~~~ 85 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEML--EAHLVQELEIKEAGNRGRPAVGLVVETEAW 85 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEC-------------CEEECCTTC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEeecccCCCCCCCCCeEEEEcCCcc
Confidence 4577777778899999999999999999999999996 45777654321 1112445678887753
No 200
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=31.24 E-value=52 Score=32.28 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeee
Q 043775 423 TYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILI 470 (554)
Q Consensus 423 ~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~ 470 (554)
.-+..||.+.++...+|.+||++.+|++...+.+.|..|. ..+++.
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~--~~G~~i 50 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR--DWGVDV 50 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHH--HTTCCC
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCcE
Confidence 3456677777888899999999999999999999999996 344443
No 201
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=31.08 E-value=21 Score=28.03 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=30.3
Q ss_pred ccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCC
Q 043775 505 KVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPE 549 (554)
Q Consensus 505 k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~ 549 (554)
..++..+|..++ ..++..+.+.+-+.|..|.++|||+|..+
T Consensus 21 ~~~~~~el~~~l----a~~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 21 EGIATYDLYKKV----NAEFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp TTCBHHHHHHHH----HTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCcCHHHHHHHH----HHHcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 345555554333 34577899999999999999999999654
No 202
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.83 E-value=65 Score=27.67 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=41.1
Q ss_pred EEecHHHHHHHHHhhC-CCccCHHHHHHHh-----CCCHHHHHHHHHHhhhccceeeeec
Q 043775 419 LIISTYHAAILDLFNA-SNRLSYSQVITQL-----NLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 419 l~vs~~Q~~ILllFN~-~~~lt~~ei~~~t-----~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+.++.-...||-.+.+ .+.+|.+||.+.+ +++...+-|+|..|. ..+++.+.
T Consensus 23 ~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~ 80 (150)
T 2xig_A 23 LKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLE--KENFISVL 80 (150)
T ss_dssp --CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCcEEEE
Confidence 3567777788877754 4689999999998 899999999999996 56787764
No 203
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=30.80 E-value=18 Score=30.31 Aligned_cols=29 Identities=7% Similarity=0.105 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHhhhhhcccccC--CCCCCC
Q 043775 525 KPAVKAFKKRIEGLISQDYLERY--PENPNT 553 (554)
Q Consensus 525 ~~~~~~iK~~Ie~LIereyl~Rd--~~d~~~ 553 (554)
..+.+.+-+.+..|.++|||+|. ++|+..
T Consensus 52 ~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~ 82 (152)
T 1ku9_A 52 KISKGNVSMSLKKLEELGFVRKVWIKGERKN 82 (152)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTTCSSC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecCCCceE
Confidence 35778899999999999999996 455543
No 204
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=29.61 E-value=45 Score=28.06 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=28.2
Q ss_pred ccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCC
Q 043775 505 KVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENP 551 (554)
Q Consensus 505 k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~ 551 (554)
..++..+|...+ ...-..+...|...|+.|.++|||+|..+++
T Consensus 23 ~~~t~~el~~~l----~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r 65 (138)
T 2g9w_A 23 EPQTVRQVHEAL----SARRDLAYTTVMAVLQRLAKKNLVLQIRDDR 65 (138)
T ss_dssp SCEEHHHHHHHH----TTTCCCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred CCCCHHHHHHHH----hccCCCCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 345555554443 2222357889999999999999999987543
No 205
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.91 E-value=48 Score=31.20 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=32.5
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHh
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSL 461 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL 461 (554)
.+|.-|-.|+.++ .+.+|.+||++.+|++...++.++...
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra 236 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNI 236 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3667777777776 378999999999999999988877655
No 206
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=28.41 E-value=62 Score=28.87 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=35.5
Q ss_pred HHHHHHHhhC-CCccCHHHHHHHhCCCHHHHHHHHHHhhhcccee-eeecC
Q 043775 425 HAAILDLFNA-SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKI-LIKEP 473 (554)
Q Consensus 425 Q~~ILllFN~-~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~ki-L~~~~ 473 (554)
+..||.++.+ ...+|..||++.+|++...+.+.|..|.. .++ +...+
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~--~G~~I~~~~ 71 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS--LGYNIVATP 71 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH--HTCCCEEET
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEC
Confidence 4456666664 45699999999999999999999999963 445 44333
No 207
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=27.87 E-value=67 Score=31.11 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=30.8
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 436 NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 436 ~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+.+|++||++.+|+++..+.+.|..|+ ..+++...
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~--~~g~l~~~ 72 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLV--IIGFMTKQ 72 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHH--hcCCeEec
Confidence 689999999999999999999999997 46788653
No 208
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.86 E-value=59 Score=27.93 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=42.0
Q ss_pred EEecHHHHHHHHHhhCC--CccCHHHHHHHh-----CCCHHHHHHHHHHhhhccceeeeec
Q 043775 419 LIISTYHAAILDLFNAS--NRLSYSQVITQL-----NLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 419 l~vs~~Q~~ILllFN~~--~~lt~~ei~~~t-----~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+.+|.-...||-.+.+. ..+|.+||.+.+ +++...+-|+|..|. ..+++.+.
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~ 71 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFD--DAGIVTRH 71 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HCCcEEEE
Confidence 34667777888777653 579999999998 899999999999996 56787764
No 209
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=27.79 E-value=27 Score=32.73 Aligned_cols=46 Identities=9% Similarity=0.178 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeee
Q 043775 423 TYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIK 471 (554)
Q Consensus 423 ~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 471 (554)
.....||.+..+ ..+|+.||++.+|++...+.++|..|. +.+++..
T Consensus 12 ~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le--~aGLV~~ 57 (232)
T 2qlz_A 12 KVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIME--REGVLQS 57 (232)
T ss_dssp HHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHH--HTTSEEE
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 345556665554 679999999999999999999999996 5677776
No 210
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=27.23 E-value=92 Score=30.64 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=35.5
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcc
Q 043775 436 NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNS 488 (554)
Q Consensus 436 ~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~ 488 (554)
..+|++||++.+|+++..+.+.|..|+ ..++|.+.+ +.|..+.
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~--~~gll~~~~--------~~y~~t~ 105 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLR--QMRVINLED--------GKWSLTE 105 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET--------TEEEECH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHH--hCCCeEeeC--------CeEecCH
Confidence 689999999999999999999999997 467887642 3677664
No 211
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=27.21 E-value=70 Score=29.45 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=35.3
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
..|.-|.-||.++ ...+|.+||++.+|+++..++.++....
T Consensus 173 ~Lt~~e~~vl~~~--~~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 173 WLDPKEATYLRWI--AVGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4788888888776 4678999999999999999999998775
No 212
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=26.84 E-value=78 Score=31.36 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=31.1
Q ss_pred CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 435 SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 435 ~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
...+|++||++.+|+++..+.+.|..|+. .+++.+.
T Consensus 48 ~~~~t~~eLA~~~g~~~~~l~rlLr~l~~--~g~l~~~ 83 (363)
T 3dp7_A 48 REGYTLQEISGRTGLTRYAAQVLLEASLT--IGTILLE 83 (363)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCeEec
Confidence 46899999999999999999999999974 5788654
No 213
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=26.46 E-value=32 Score=29.14 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.9
Q ss_pred CCChHHHHHHHHhhhhhccccc
Q 043775 525 KPAVKAFKKRIEGLISQDYLER 546 (554)
Q Consensus 525 ~~~~~~iK~~Ie~LIereyl~R 546 (554)
..+.+.+-+.|..|.++|||+|
T Consensus 66 ~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 66 IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEe
Confidence 3578889999999999999999
No 214
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.10 E-value=94 Score=25.22 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=27.7
Q ss_pred ecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHh
Q 043775 421 ISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSL 461 (554)
Q Consensus 421 vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL 461 (554)
+|.-|-.|+.+.- ...+|++||++.+|++...++..+...
T Consensus 26 L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra 65 (113)
T 1xsv_A 26 LTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRT 65 (113)
T ss_dssp SCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455555554431 245799999999999998887766544
No 215
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=25.64 E-value=1.1e+02 Score=23.52 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhh
Q 043775 424 YHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSI 463 (554)
Q Consensus 424 ~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~ 463 (554)
.+-.++-...-...++++.|++.++++.+++...|..|+.
T Consensus 17 ~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~ 56 (84)
T 1ufm_A 17 IEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMIT 56 (84)
T ss_dssp HHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 3444555556688999999999999999999999999974
No 216
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=25.38 E-value=74 Score=31.25 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=31.1
Q ss_pred CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 435 SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 435 ~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
....|++||++.+|+++..+.+.|..|+ ..+++...
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~--~~g~~~~~ 85 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLV--AIGLLEED 85 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCEEec
Confidence 3579999999999999999999999996 46788763
No 217
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=25.14 E-value=25 Score=29.44 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.3
Q ss_pred CCChHHHHHHHHhhhhhcccccCC
Q 043775 525 KPAVKAFKKRIEGLISQDYLERYP 548 (554)
Q Consensus 525 ~~~~~~iK~~Ie~LIereyl~Rd~ 548 (554)
..+++.+-+.|..|.++|||+|.+
T Consensus 61 ~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 61 FLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCChhhHHHHHHHHHHCCCeEecC
Confidence 468889999999999999999864
No 218
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=25.11 E-value=73 Score=20.83 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=23.8
Q ss_pred HHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHh
Q 043775 428 ILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSL 461 (554)
Q Consensus 428 ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL 461 (554)
|+.++.+ .+|+.+|++.+|++...+.+.+...
T Consensus 14 i~~l~~~--g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 14 ISRLLEK--GHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHT--TCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHc--CCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 3334443 3899999999999999888876543
No 219
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=24.99 E-value=67 Score=29.78 Aligned_cols=41 Identities=7% Similarity=0.081 Sum_probs=35.4
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
..|.-|.-||.+.- ...|.+||++.+|+++..++.++..+.
T Consensus 175 ~Lt~re~~vl~~~~--~G~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 175 RLTARETEMLKWTA--VGKTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46778888887773 578999999999999999999998885
No 220
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=24.60 E-value=1e+02 Score=29.80 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=31.0
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 436 NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 436 ~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+.+|++||++.+|+++..+.+.|..|+ ..+++...
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~--~~g~l~~~ 74 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLV--AFEIFQGD 74 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHH--hCCceEec
Confidence 579999999999999999999999997 46788764
No 221
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=24.21 E-value=91 Score=25.39 Aligned_cols=39 Identities=5% Similarity=0.284 Sum_probs=27.9
Q ss_pred ecHHHHHHHHH-hhCCCccCHHHHHHHhCCCHHHHHHHHHHh
Q 043775 421 ISTYHAAILDL-FNASNRLSYSQVITQLNLTHDDLVRLLHSL 461 (554)
Q Consensus 421 vs~~Q~~ILll-FN~~~~lt~~ei~~~t~i~~~~l~~~L~sL 461 (554)
+|+-|..|+.+ +- +.+|+.||++.+|++...+...+...
T Consensus 23 L~~~~r~vl~l~y~--~g~s~~EIA~~lgiS~~tV~~~l~ra 62 (113)
T 1s7o_A 23 LTDKQMNYIELYYA--DDYSLAEIADEFGVSRQAVYDNIKRT 62 (113)
T ss_dssp SCHHHHHHHHHHHH--TCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45555555544 33 35799999999999998887766544
No 222
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=24.17 E-value=36 Score=27.69 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=30.8
Q ss_pred cccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCC
Q 043775 504 RKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENP 551 (554)
Q Consensus 504 ~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~ 551 (554)
...++..+|...+-.. ...+.+.+.+.|+.|.++|||+|..+|+
T Consensus 22 ~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~r 65 (123)
T 1okr_A 22 KKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDNK 65 (123)
T ss_dssp HSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred CCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecCC
Confidence 3445556665554321 2357888999999999999999976553
No 223
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=23.54 E-value=90 Score=30.33 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=31.8
Q ss_pred hhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeee-ec
Q 043775 432 FNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILI-KE 472 (554)
Q Consensus 432 FN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~-~~ 472 (554)
....+.+|.+||++.+|++...+.|-|..|. +.+++. +.
T Consensus 16 l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~--~~G~v~iri 55 (315)
T 2w48_A 16 LYYEQDMTQAQIARELGIYRTTISRLLKRGR--EQGIVTIAI 55 (315)
T ss_dssp HHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEEe
Confidence 3445569999999999999999999999995 567775 44
No 224
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=23.47 E-value=51 Score=23.77 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHchh
Q 043775 126 SYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRY 162 (554)
Q Consensus 126 ~yY~~~s~~~i~~~~~~~Yl~~ve~~l~eE~~r~~~y 162 (554)
+|-.+.-.....-.+.+.-+.+++..+++|..||+.-
T Consensus 8 eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~ 44 (60)
T 3k6t_A 8 EYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVA 44 (60)
T ss_dssp HHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333334455667788999999999988763
No 225
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=23.41 E-value=44 Score=30.97 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCccCHHHHHHHhC-------CCHHHHHHHHHHhhhcccee-eeecCCCCCCCCCCeEEE---cccCCCccccccccccc
Q 043775 435 SNRLSYSQVITQLN-------LTHDDLVRLLHSLSILYYKI-LIKEPDTKSISRSDYFEL---NSKFTDRMRGSRSLSHH 503 (554)
Q Consensus 435 ~~~lt~~ei~~~t~-------i~~~~l~~~L~sL~~~k~ki-L~~~~~~~~~~~~d~f~~---N~~F~~~~~ki~RiMK~ 503 (554)
.+-+++.|+-...+ ++++++.+++..|..-+.++ |.+-+. ....| ..+......+|-.++..
T Consensus 93 GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~s-------g~~vvqs~~~~~~~~~~~il~~~~~ 165 (218)
T 3cuq_B 93 GGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDS-------GVMVIELQSHKEEEMVASALETVSE 165 (218)
T ss_dssp TSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTT-------SBEEEEETTCCGGGGHHHHHHHHHH
T ss_pred CCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEECC-------CcEEEEcCCCchHHHHHHHHHHHHH
Confidence 34567777766553 89999999988885322222 111111 11111 11111122223233344
Q ss_pred cccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCC
Q 043775 504 RKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPN 552 (554)
Q Consensus 504 ~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~ 552 (554)
...++..+| ..+|..++...+..++.++..|.+=||+....
T Consensus 166 ~g~vt~~~l--------a~~l~ws~~~a~e~L~~~e~~G~l~~D~~~eg 206 (218)
T 3cuq_B 166 KGSLTSEEF--------AKLVGMSVLLAKERLLLAEKMGHLCRDDSVEG 206 (218)
T ss_dssp TSCBCHHHH--------HHHHTCCHHHHHHHHHHHHHTTSEEEEESSSC
T ss_pred CCCcCHHHH--------HHHhCCCHHHHHHHHHHHHHcCCEEEECCCCc
Confidence 444544433 33467899999999999999999999965433
No 226
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=23.20 E-value=93 Score=25.11 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=33.3
Q ss_pred hhCCCcc-CHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 432 FNASNRL-SYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 432 FN~~~~l-t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
|...+.+ |..+|++..|++...+.++|..|. ..++|...|
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~--~~Gli~~~~ 67 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSKAYQSLL--DDNVIEKRR 67 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEec
Confidence 3445677 999999999999999999999996 567887665
No 227
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=23.17 E-value=74 Score=29.31 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=34.7
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
.+|.-|.-||.+.- +..|.+||++.+|++...++.++....
T Consensus 175 ~Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 175 MLSPREMLCLVWAS--KGKTASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp SCCHHHHHHHHHHH--TTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888887763 578999999999999999999998775
No 228
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=22.97 E-value=43 Score=19.66 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=16.8
Q ss_pred cCCCCChHHHHHHHHhhhhh
Q 043775 522 RMFKPAVKAFKKRIEGLISQ 541 (554)
Q Consensus 522 ~~F~~~~~~iK~~Ie~LIer 541 (554)
++|.|-++.||+.++.+.|+
T Consensus 1 ~~~~P~~e~ik~q~~~i~e~ 20 (26)
T 1oef_A 1 SWFEPLVEDMQRQWAGLVEK 20 (26)
T ss_dssp CCCTTHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 36899999999999988764
No 229
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=22.92 E-value=1.3e+02 Score=24.74 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=28.0
Q ss_pred HHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhh
Q 043775 429 LDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSI 463 (554)
Q Consensus 429 LllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~ 463 (554)
..+..+ +.-|+..|.+.||||...++..|..|..
T Consensus 26 a~lId~-~~~nvp~L~~~TGmPRRTiQd~I~aL~e 59 (117)
T 3ke2_A 26 AHLMDD-ARHNLLSLGKLTGMPRRTLQDAIASFAD 59 (117)
T ss_dssp HHHHHH-SCCCHHHHHHHHCCCHHHHHHHHHTGGG
T ss_pred HHHHhc-CCCCHHHHHHHHCCCHhHHHHHHHHhhh
Confidence 334444 5559999999999999999999999964
No 230
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=22.90 E-value=14 Score=29.05 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=23.6
Q ss_pred CCCChHH-HHHHHHhhhhhcccccCCCCCC
Q 043775 524 FKPAVKA-FKKRIEGLISQDYLERYPENPN 552 (554)
Q Consensus 524 F~~~~~~-iK~~Ie~LIereyl~Rd~~d~~ 552 (554)
+..+.+. +-+.|..|.++|||++++.|+.
T Consensus 40 l~is~~t~vs~~l~~Le~~Glv~~~~~drR 69 (95)
T 2pg4_A 40 SGVSEKTFFMGLKDRLIRAGLVKEETLSYR 69 (95)
T ss_dssp HCCCHHHHHTTHHHHHHHTTSEEEEEEETT
T ss_pred HCCCchHHHHHHHHHHHHCCCeecCCCCCC
Confidence 3457788 9999999999999998776653
No 231
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.62 E-value=75 Score=27.06 Aligned_cols=52 Identities=8% Similarity=0.191 Sum_probs=40.5
Q ss_pred EEecHHHHHHHHHhhCCCccCHHHHHHHh-----CCCHHHHHHHHHHhhhccceeeeec
Q 043775 419 LIISTYHAAILDLFNASNRLSYSQVITQL-----NLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 419 l~vs~~Q~~ILllFN~~~~lt~~ei~~~t-----~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
+.+|.--..||-.+.+.+.+|.+||.+.+ +++...+-|+|..|. ..+++.+.
T Consensus 15 ~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~--e~Glv~~i 71 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLE--ELGLVSHA 71 (145)
T ss_dssp CCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHH--HCCcEEEE
Confidence 34566667787666554589999999887 789999999999996 56777764
No 232
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=22.60 E-value=28 Score=26.83 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.3
Q ss_pred CCCChHHHHHHHHhhhhhcccccCCCCC
Q 043775 524 FKPAVKAFKKRIEGLISQDYLERYPENP 551 (554)
Q Consensus 524 F~~~~~~iK~~Ie~LIereyl~Rd~~d~ 551 (554)
+..+...|.++|..|.+.|+|++.+..+
T Consensus 37 Lgvsr~tV~~~L~~Le~~G~I~~~g~~~ 64 (81)
T 1qbj_A 37 LGTPKKEINRVLYSLAKKGKLQKEAGTP 64 (81)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEESSSS
T ss_pred HCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 4467788999999999999999876554
No 233
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=22.59 E-value=65 Score=27.57 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=25.6
Q ss_pred cHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHH
Q 043775 422 STYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLH 459 (554)
Q Consensus 422 s~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~ 459 (554)
+.-|-.|+.+. ..+.+|++||++.+|++...++..|.
T Consensus 95 p~~~r~vl~L~-~~~g~s~~EIA~~lgis~~tV~~~l~ 131 (157)
T 2lfw_A 95 TPLSRQALLLT-AMEGFSPEDAAYLIEVDTSEVETLVT 131 (157)
T ss_dssp CTTHHHHHTTT-SSSCCCHHHHHHTTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44444444442 23468999999999999988766554
No 234
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=22.45 E-value=30 Score=28.89 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHhhhhhcccccCC
Q 043775 524 FKPAVKAFKKRIEGLISQDYLERYP 548 (554)
Q Consensus 524 F~~~~~~iK~~Ie~LIereyl~Rd~ 548 (554)
...+.+.+-+.|..|.++|||+|..
T Consensus 61 l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 61 TKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HCCCHhhHHHHHHHHHHCCCeeccC
Confidence 3468888999999999999999854
No 235
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=22.40 E-value=37 Score=25.62 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=21.4
Q ss_pred CCCCChHHHHHHHHhhhhhcccccC
Q 043775 523 MFKPAVKAFKKRIEGLISQDYLERY 547 (554)
Q Consensus 523 ~F~~~~~~iK~~Ie~LIereyl~Rd 547 (554)
.+..+...+.+.+..|.+.|+|++.
T Consensus 23 ~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 23 ALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3556888899999999999999964
No 236
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=22.12 E-value=1.3e+02 Score=29.08 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=30.9
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 436 NRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 436 ~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
..+|++||++.+|+++..+.+.|..|+. .+++...
T Consensus 37 g~~t~~elA~~~~~~~~~l~rlLr~l~~--~gl~~~~ 71 (332)
T 3i53_A 37 GHRTAAEIASAAGAHADSLDRLLRHLVA--VGLFTRD 71 (332)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCcEEec
Confidence 5899999999999999999999999974 6788764
No 237
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=22.11 E-value=31 Score=29.16 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=20.6
Q ss_pred CCCChHHHHHHHHhhhhhcccccCC
Q 043775 524 FKPAVKAFKKRIEGLISQDYLERYP 548 (554)
Q Consensus 524 F~~~~~~iK~~Ie~LIereyl~Rd~ 548 (554)
+..+++.+-+.|..|.++|||+|.+
T Consensus 65 l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 65 LDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 3468889999999999999999864
No 238
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=21.90 E-value=93 Score=28.10 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=25.8
Q ss_pred cHHHHHHH-HHhhCCCccCHHHHHHHhCCCHHHHHHHHH
Q 043775 422 STYHAAIL-DLFNASNRLSYSQVITQLNLTHDDLVRLLH 459 (554)
Q Consensus 422 s~~Q~~IL-llFN~~~~lt~~ei~~~t~i~~~~l~~~L~ 459 (554)
+.-|-.|+ +.|- +.+|++||++.+|++...++..+.
T Consensus 189 ~~~~r~vl~l~~~--~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 189 PEREKLVIQLIFY--EELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp CHHHHHHHHHHHT--SCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHh--cCCCHHHHHHHhCCCHHHHHHHHH
Confidence 44444444 4453 468999999999999988776553
No 239
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=21.90 E-value=24 Score=26.52 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=30.5
Q ss_pred cccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCC
Q 043775 502 HHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPN 552 (554)
Q Consensus 502 K~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~ 552 (554)
|.+|.+..++| +..|..+.+++-.||+.|.+.+-|.---+|+.
T Consensus 17 k~~Kvv~LedL--------A~~F~l~t~~~i~RI~~Le~~g~ltGViDDRG 59 (72)
T 1wi9_A 17 KKSKVVLLEDL--------AFQMGLRTQDAINRIQDLLTEGTLTGVIDDRG 59 (72)
T ss_dssp HHCSEECHHHH--------HHHHCSCHHHHHHHHHHHHHHSSSCEEECTTC
T ss_pred HHcCeeeHHHH--------HHHhCCChHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 44555544443 34588999999999999999987776444444
No 240
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=21.70 E-value=25 Score=27.29 Aligned_cols=27 Identities=4% Similarity=0.122 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHhhhhhcccccCCCCC
Q 043775 525 KPAVKAFKKRIEGLISQDYLERYPENP 551 (554)
Q Consensus 525 ~~~~~~iK~~Ie~LIereyl~Rd~~d~ 551 (554)
..+.+.+-+.+..|.+.|+|++..+.+
T Consensus 49 ~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 49 GLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 467888999999999999999876544
No 241
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=21.64 E-value=1.1e+02 Score=29.94 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.4
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 437 RLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 437 ~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
.+|++||++.+|+++..+.+.|..|+. .+++.+.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~--~gll~~~ 89 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAA--LGLLTKE 89 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHH--CCCeEec
Confidence 899999999999999999999999974 5788764
No 242
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=21.63 E-value=57 Score=27.10 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=24.8
Q ss_pred hccCCCCChHHHHHHHHhhhhhcccccCCC
Q 043775 520 LGRMFKPAVKAFKKRIEGLISQDYLERYPE 549 (554)
Q Consensus 520 l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~ 549 (554)
+..++..+.+.+-+.|..|.++|||+|..+
T Consensus 60 la~~l~~~~~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 60 MGEQLYLDSGTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHTSEECCBC
T ss_pred HHHHHCCCcCcHHHHHHHHHHCCCEEeccC
Confidence 334567889999999999999999999643
No 243
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=21.48 E-value=47 Score=28.39 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHHHhhhhhcccccCC
Q 043775 523 MFKPAVKAFKKRIEGLISQDYLERYP 548 (554)
Q Consensus 523 ~F~~~~~~iK~~Ie~LIereyl~Rd~ 548 (554)
++..+.+.+-+.|..|.++|||+|..
T Consensus 76 ~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 76 LGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 45678899999999999999999864
No 244
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=21.32 E-value=32 Score=28.49 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCCChHHHHHHHHhhhhhcccccC--CCCC
Q 043775 524 FKPAVKAFKKRIEGLISQDYLERY--PENP 551 (554)
Q Consensus 524 F~~~~~~iK~~Ie~LIereyl~Rd--~~d~ 551 (554)
+..+.+.+-+.|..|.++|||+|. +.|+
T Consensus 57 l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 57 LQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred hCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 346888899999999999999985 4444
No 245
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=21.19 E-value=87 Score=29.66 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=35.5
Q ss_pred EecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhh
Q 043775 420 IISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462 (554)
Q Consensus 420 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~ 462 (554)
..|.-|.-||.+.- +..|..||++.+|+++..++.++....
T Consensus 197 ~Lt~re~~vl~~~~--~G~s~~eIA~~l~is~~TV~~~~~~~~ 237 (265)
T 3qp6_A 197 PLSQREYDIFHWMS--RGKTNWEIATILNISERTVKFHVANVI 237 (265)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888888773 578999999999999999999998875
No 246
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=21.08 E-value=98 Score=27.16 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=62.8
Q ss_pred HHhhCCCccCHHHHHHHhC--CCHHHHHHHHHHhhhc----cceeeeecCCCCCCCCCCeEEEcccCCCccccccccccc
Q 043775 430 DLFNASNRLSYSQVITQLN--LTHDDLVRLLHSLSIL----YYKILIKEPDTKSISRSDYFELNSKFTDRMRGSRSLSHH 503 (554)
Q Consensus 430 llFN~~~~lt~~ei~~~t~--i~~~~l~~~L~sL~~~----k~kiL~~~~~~~~~~~~d~f~~N~~F~~~~~ki~RiMK~ 503 (554)
++|-..+.+|.++|++.++ ++.+++...|..|... ..++-... +..+=.|....+|..- |+|..+.
T Consensus 15 lLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~-----v~~gy~l~t~~~~~~~---v~~~~~~ 86 (162)
T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHA-----IAGGYRFLTEPEFADL---VRQLLAP 86 (162)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEE-----ETTEEEEEECGGGHHH---HHHHHSC
T ss_pred HHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEE-----ECCEEEEEEcHHHHHH---HHHHhcc
Confidence 4666778899999999999 9999999999988631 11221111 1112233345555422 2244433
Q ss_pred cc--cCChHHHHHHHHHHhccCCCCChHHHH--------HHHHhhhhhccccc
Q 043775 504 RK--VLGHQQLVSECIELLGRMFKPAVKAFK--------KRIEGLISQDYLER 546 (554)
Q Consensus 504 ~k--~l~~~~L~~ev~~~l~~~F~~~~~~iK--------~~Ie~LIereyl~R 546 (554)
.+ .++...| ||...+.-+=+.+..+|. ..|..|+++|+|+-
T Consensus 87 ~~~~~LS~aaL--EtLaiIay~qPiTR~eI~~irGv~~~~~v~~L~e~glI~e 137 (162)
T 1t6s_A 87 VIQRRLSRSML--EVLAVVAWHQPVTKGEIQQIRGASPDYSIDRLLARGLIEV 137 (162)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHCSEEHHHHHHHHTCCCCSHHHHHHHTTSEEE
T ss_pred cccCccCHHHH--HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHCCCEEE
Confidence 32 3444443 455544433344555544 56999999999984
No 247
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=20.86 E-value=44 Score=27.85 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=21.9
Q ss_pred CCCChHHHHHHHHhhhhhcccccCCC
Q 043775 524 FKPAVKAFKKRIEGLISQDYLERYPE 549 (554)
Q Consensus 524 F~~~~~~iK~~Ie~LIereyl~Rd~~ 549 (554)
+..+.+.+-+.|..|.++|||+|..+
T Consensus 55 l~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 55 WSLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HCCCHHHHHHHHHHHHHCCCEeeccC
Confidence 34678889999999999999999543
No 248
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=20.84 E-value=92 Score=30.69 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=31.3
Q ss_pred CCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeec
Q 043775 435 SNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKE 472 (554)
Q Consensus 435 ~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 472 (554)
...+|++||++.+|+++..+.+.|..|+ ..+++...
T Consensus 47 ~~~~t~~eLA~~~g~~~~~l~r~Lr~L~--~~Gll~~~ 82 (374)
T 1qzz_A 47 AGADTLAGLADRTDTHPQALSRLVRHLT--VVGVLEGG 82 (374)
T ss_dssp TTCCSHHHHHHHHTCCHHHHHHHHHHHH--HTTSEECC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHh--hCCCEEEe
Confidence 3579999999999999999999999997 46788763
No 249
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=20.84 E-value=39 Score=27.77 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=20.5
Q ss_pred CCCChHHHHHHHHhhhhhcccccC
Q 043775 524 FKPAVKAFKKRIEGLISQDYLERY 547 (554)
Q Consensus 524 F~~~~~~iK~~Ie~LIereyl~Rd 547 (554)
+..+.+.+-+.|..|.++|||+|.
T Consensus 57 l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 57 MGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp CSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HCCChhHHHHHHHHHHHCCCeeec
Confidence 456777799999999999999984
No 250
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=20.61 E-value=39 Score=29.26 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHhhhhhcccccC--CCCC
Q 043775 524 FKPAVKAFKKRIEGLISQDYLERY--PENP 551 (554)
Q Consensus 524 F~~~~~~iK~~Ie~LIereyl~Rd--~~d~ 551 (554)
...+.+.+-+.|..|.++|||+|. +.|+
T Consensus 69 l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 69 LGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred hCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 346888899999999999999994 4444
No 251
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=20.56 E-value=1.2e+02 Score=25.27 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=33.6
Q ss_pred hhCCCcc-CHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 432 FNASNRL-SYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 432 FN~~~~l-t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
|...+.+ |..+|++..|++...+.++|..|. ..+++...|
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~--~~Gli~~~~ 62 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNGLTLLV--EAGILYKKR 62 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHH--TTTSEEEET
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEec
Confidence 3455678 999999999999999999999996 567887665
No 252
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=20.44 E-value=34 Score=29.31 Aligned_cols=30 Identities=7% Similarity=0.158 Sum_probs=24.0
Q ss_pred CCCCChHHHHHHHHhhhhhcccccC--CCCCC
Q 043775 523 MFKPAVKAFKKRIEGLISQDYLERY--PENPN 552 (554)
Q Consensus 523 ~F~~~~~~iK~~Ie~LIereyl~Rd--~~d~~ 552 (554)
++..+.+.+-+.|..|.++|||+|. ++|+.
T Consensus 55 ~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR 86 (151)
T 4aik_A 55 AIGIEQPSLVRTLDQLEEKGLITRHTSANDRR 86 (151)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred HHCcCHHHHHHHHHHHHhCCCeEeecCCCCCc
Confidence 4557888899999999999999974 55543
No 253
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=20.43 E-value=37 Score=28.55 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=17.3
Q ss_pred CCCCChHHHHHHHHhhhhhcccccCC
Q 043775 523 MFKPAVKAFKKRIEGLISQDYLERYP 548 (554)
Q Consensus 523 ~F~~~~~~iK~~Ie~LIereyl~Rd~ 548 (554)
++..+.+.+-+.|..|.++|||+|..
T Consensus 66 ~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 66 FFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp C------CHHHHHHHHHHTTSBCCC-
T ss_pred HHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 34567777899999999999999864
No 254
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=20.27 E-value=1e+02 Score=25.55 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=33.6
Q ss_pred hhCCCcc-CHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecC
Q 043775 432 FNASNRL-SYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP 473 (554)
Q Consensus 432 FN~~~~l-t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 473 (554)
+...+.+ |..+|++..|++...+.++|..|. ..+++...|
T Consensus 29 ~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~--~~Gli~~~~ 69 (126)
T 3by6_A 29 LSANDQLPSVRETALQEKINPNTVAKAYKELE--AQKVIRTIP 69 (126)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEec
Confidence 3445678 999999999999999999999996 567887665
No 255
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=20.05 E-value=36 Score=28.16 Aligned_cols=24 Identities=8% Similarity=-0.044 Sum_probs=21.0
Q ss_pred CCChHHHHHHHHhhhhhcccccCC
Q 043775 525 KPAVKAFKKRIEGLISQDYLERYP 548 (554)
Q Consensus 525 ~~~~~~iK~~Ie~LIereyl~Rd~ 548 (554)
..+.+.+-+.|..|.++|||+|.+
T Consensus 61 ~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 61 SIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcchHHHHHHHHHHCCCEEeeC
Confidence 467888999999999999999853
Done!