BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043777
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 141/314 (44%), Gaps = 89/314 (28%)
Query: 1 MAGKSNVLVIGAIGRIGYHFTRRSIEYGHPKFALIRDSASNFN---FSLLRVFH-SGVFD 56
M +S +L+IGA G IG H + S++ GHP F L+R+S ++ N LL F SG
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANI 60
Query: 57 YWGLLEDEKSLLEAVKQVDV---------------------------RFIPSEYGA---G 86
G ++D SL+EAVK VDV RF PSE+G
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDN 120
Query: 87 VFVKDTDVAAFTINALDDPRTLNKLLHLREISHTF------------NMESSGEL----- 129
V + + F + A + + + I +T+ ++ +G
Sbjct: 121 VHAVEPAKSVFEVKA-----KVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRD 175
Query: 130 ------DGTKLYPHLKYTTISDYLDTSV--PR-----------GNIYSFNDLVSLWEEKI 170
DG +K I + +V PR N S N+LV+LWE+KI
Sbjct: 176 KVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKI 235
Query: 171 GKALDRVYVAEDQLLK-------------NIQEKARVLGDQTNFEIEPSFGVEATELYPD 217
K L++ YV E+++LK I V GDQTNFEI P+ GVEA++LYPD
Sbjct: 236 DKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPA-GVEASQLYPD 294
Query: 218 VNYTTVDEYLNQFI 231
V YTTVDEYL+ F+
Sbjct: 295 VKYTTVDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 145/311 (46%), Gaps = 88/311 (28%)
Query: 4 KSNVLVIGAIGRIGYHFTRRSIEYGHPKFALIRDSASNFNF----SLLRVFHS-GVFDYW 58
++ +L++G G IG H SI+ G+P +AL+R + + N L+ + S GV
Sbjct: 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLE 61
Query: 59 GLLEDEKSLLEAVKQVDV---------------------------RFIPSEYGAGVFVKD 91
G + D ++L++A+KQVD+ +F PSE+ G+ V
Sbjct: 62 GDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEF--GLDVDR 119
Query: 92 TDVAAFTINALDDPRTLNKLLHLREISHTFN---------MESSGELDGTKLYPHLKYTT 142
D ++ ++ +++ + +T+ + + +LD T P K
Sbjct: 120 HDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDP-PRDKVVI 178
Query: 143 ISD-------------------------YLDTSV----PRGNIYSFNDLVSLWEEKIGKA 173
+ D L+ +V P+ N + N++++LWE+KIGK
Sbjct: 179 LGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPK-NYLTQNEVIALWEKKIGKT 237
Query: 174 LDRVYVAEDQLLKNIQEKA-------------RVLGDQTNFEIEPSFGVEATELYPDVNY 220
L++ YV+E+Q+LK+IQE + ++ GD +EI+P+ +EA+E YPDV Y
Sbjct: 238 LEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKGDAV-YEIDPAKDIEASEAYPDVTY 296
Query: 221 TTVDEYLNQFI 231
TT DEYLNQF+
Sbjct: 297 TTADEYLNQFV 307
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 133/315 (42%), Gaps = 86/315 (27%)
Query: 1 MAGKSNVLVIGAIGRIGYHFTRRSIEYGHPKFALIR-DSASNFN-FSLLRVFHS-GVFDY 57
M KS VL++G G IG SI GHP + L R + SN + +L F G
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 58 WGLLEDEKSLLEAVKQVDV-------------------------------RFIPSEYGAG 86
L+D + L++A+KQVDV RF+PSE+G
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMD 120
Query: 87 VFVKDTDVAAFTINALDDPRTLNKLLHLREISHTF---NM------ESSGELDGTKLYPH 137
+ + + +I +D R + + + I +T+ NM S +LDG + P
Sbjct: 121 PDIMEHALQPGSITFIDK-RKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPR 179
Query: 138 LKYTTISD---------------YLDTSV-------------PRGNIYSFNDLVSLWEEK 169
K D Y S+ P NI S +++ +WE
Sbjct: 180 DKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERL 239
Query: 170 IGKALDRVYVAEDQLLKNIQEKA---RVL----------GDQTNFEIEPSFGVEATELYP 216
+ LD++Y++ L ++++K+ +++ GD NFEI P+ +EAT+LYP
Sbjct: 240 SEQNLDKIYISSQDFLADMKDKSYEEKIVRCHLYQIFFRGDLYNFEIGPN-AIEATKLYP 298
Query: 217 DVNYTTVDEYLNQFI 231
+V Y T+D YL +++
Sbjct: 299 EVKYVTMDSYLERYV 313
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 70/157 (44%), Gaps = 49/157 (31%)
Query: 88 FVKDTDVAAFTINALDDPRTLNKLLHLREISHTFNMESSGELDGTKLYPHLKYTTISDYL 147
FV TD+ FT+ +DD RTLNK +H R
Sbjct: 195 FVAGTDIGKFTMKTVDDVRTLNKSVHFR-------------------------------- 222
Query: 148 DTSVPRGNIYSFNDLVSLWEEKIGKALDRVYVAEDQLL----KNIQEKARVL-------- 195
P N + N+L S+WE+KIG+ L RV V ED LL +NI ++ V
Sbjct: 223 ----PSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFI 278
Query: 196 -GDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI 231
G Q NF I+ VE T LYP+ ++ TV+E ++I
Sbjct: 279 KGCQVNFSIDGPEDVEVTTLYPEDSFRTVEECFGEYI 315
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 54/166 (32%)
Query: 83 YGAG----VFVKDTDVAAFTINALDDPRTLNKLLHLREISHTFNMESSGELDGTKLYPHL 138
YG G V + D+A +TI DPR N+++ R
Sbjct: 180 YGTGETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYR----------------------- 216
Query: 139 KYTTISDYLDTSVPRGNIYSFNDLVSLWEEKIGKALDRVYVAEDQLLKNIQEKAR----- 193
P NI S N+L+SLWE K G + +V++ ++QL++ QE +
Sbjct: 217 -------------PPKNIISQNELISLWEAKSGLSFKKVHMPDEQLVRLSQELPQPQNIP 263
Query: 194 --------VLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI 231
V GD ++E+ +EA+ LYP++ +T++D L+ FI
Sbjct: 264 VSILHSIFVKGDLMSYEMRKD-DIEASNLYPELEFTSIDGLLDLFI 308
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 6 NVLVIGAIGRIGYHFTRRSIEYGHPKFALIRDSASNFNFSLLRV---FHS-GVFDYWGLL 61
+++ G G IG R S+ + HP F R + S +++ F S GV G +
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 62 EDEKSLLEAVKQVDV 76
E+ + ++ +KQVD+
Sbjct: 66 EEHEKMVSVLKQVDI 80
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 125/300 (41%), Gaps = 75/300 (25%)
Query: 4 KSNVLVIGAIGRIGYHFTRRSIEYGHPKFALIRDSASNFNFSLLRVFHS-GVFDYWGLLE 62
KS +L+ G G IG H + S++ GHP + R ++S +LL F S G G L+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKT--TLLDEFQSLGAIIVKGELD 68
Query: 63 DEKSLLEAVKQVDV---------------------------RFIPSEYGAG--------- 86
+ + L+E +K+VDV RF+PS++G
Sbjct: 69 EHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPP 128
Query: 87 --VFVKDTDVAAFTINALDDPRT-----------LNKLLHLREISHTFNMESSGELDGTK 133
++ + I + P T +N LL + + +GE
Sbjct: 129 FEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAKFAM 188
Query: 134 LYPH------LKYTTISDYLDTSV---PRGNIYSFNDLVSLWEEKIGKALDRVYVAEDQ- 183
Y +K T L+ V P NI + +L+S WE+KIGK +++V E++
Sbjct: 189 NYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEI 248
Query: 184 --LLKNIQEKARVL----------GDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI 231
L K + E + G +++ + + VEA+ LYP++ +TT+DE L+ F+
Sbjct: 249 VALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDELLDIFV 307
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 125/300 (41%), Gaps = 75/300 (25%)
Query: 4 KSNVLVIGAIGRIGYHFTRRSIEYGHPKFALIRDSASNFNFSLLRVFHS-GVFDYWGLLE 62
KS +L+ G G IG H + S++ GHP + R ++S +LL F S G G L+
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKT--TLLDEFQSLGAIIVKGELD 64
Query: 63 DEKSLLEAVKQVDV---------------------------RFIPSEYGAG--------- 86
+ + L+E +K+VDV RF+PS++G
Sbjct: 65 EHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPP 124
Query: 87 --VFVKDTDVAAFTINALDDPRT-----------LNKLLHLREISHTFNMESSGELDGTK 133
++ + I + P T +N LL + + +GE
Sbjct: 125 FEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAKFAM 184
Query: 134 LYPH------LKYTTISDYLDTSV---PRGNIYSFNDLVSLWEEKIGKALDRVYVAEDQ- 183
Y +K T L+ V P NI + +L+S WE+KIGK +++V E++
Sbjct: 185 NYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEI 244
Query: 184 --LLKNIQEKARVL----------GDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI 231
L K + E + G +++ + + VEA+ LYP++ +TT+DE L+ F+
Sbjct: 245 VALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDELLDIFV 303
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 125/300 (41%), Gaps = 75/300 (25%)
Query: 4 KSNVLVIGAIGRIGYHFTRRSIEYGHPKFALIRDSASNFNFSLLRVFHS-GVFDYWGLLE 62
KS +L+ G G IG H + S++ GHP + R ++S +LL F S G G L+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKT--TLLDEFQSLGAIIVKGELD 68
Query: 63 DEKSLLEAVKQVDV---------------------------RFIPSEYGAG--------- 86
+ + L+E +K+VDV RF+PS++G
Sbjct: 69 EHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPP 128
Query: 87 --VFVKDTDVAAFTINALDDPRT-----------LNKLLHLREISHTFNMESSGELDGTK 133
++ + I + P T +N LL + + +GE
Sbjct: 129 FEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAKFAM 188
Query: 134 LYPH------LKYTTISDYLDTSV---PRGNIYSFNDLVSLWEEKIGKALDRVYVAEDQ- 183
Y +K T L+ V P NI + +L+S WE+KIGK +++V E++
Sbjct: 189 NYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEI 248
Query: 184 --LLKNIQEKARVL----------GDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI 231
L K + E + G +++ + + VEA+ LYP++ +TT+DE L+ F+
Sbjct: 249 VALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDELLDIFV 307
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 125/300 (41%), Gaps = 75/300 (25%)
Query: 4 KSNVLVIGAIGRIGYHFTRRSIEYGHPKFALIRDSASNFNFSLLRVFHS-GVFDYWGLLE 62
KS +L+ G G IG H + S++ GHP + R ++S +LL F S G G L+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKT--TLLDEFQSLGAIIVKGELD 68
Query: 63 DEKSLLEAVKQVDV---------------------------RFIPSEYGAG--------- 86
+ + L+E +K+VDV RF+PS++G
Sbjct: 69 EHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPP 128
Query: 87 --VFVKDTDVAAFTINALDDPRT-----------LNKLLHLREISHTFNMESSGELDGTK 133
++ + I + P T +N LL + + +GE
Sbjct: 129 FEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAKFAM 188
Query: 134 LYPH------LKYTTISDYLDTSV---PRGNIYSFNDLVSLWEEKIGKALDRVYVAEDQ- 183
Y +K T L+ V P NI + +L+S WE+KIGK +++V E++
Sbjct: 189 NYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEI 248
Query: 184 --LLKNIQEKARVL----------GDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI 231
L K + E + G +++ + + VEA+ LYP++ +TT+DE L+ F+
Sbjct: 249 VALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDELLDIFV 307
>pdb|2P7V|A Chain A, Crystal Structure Of The Escherichia Coli Regulator Of
Sigma 70, Rsd, In Complex With Sigma 70 Domain 4
Length = 158
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 11/79 (13%)
Query: 123 MESSGEL-DGTKLYPHLKYTT--ISDY----LDTSVPRGNIYSFNDLVSLWEEKIGKALD 175
+E +G+L K++P L+ T I DY L+T++ N F ++S IG+AL+
Sbjct: 80 LEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLS----DIGEALE 135
Query: 176 RVYVAEDQLLKNIQEKARV 194
+V ED+L+ + + ARV
Sbjct: 136 ARFVLEDKLILLVLDAARV 154
>pdb|4AP5|A Chain A, Crystal Structure Of Human Pofut2
pdb|4AP5|B Chain B, Crystal Structure Of Human Pofut2
Length = 408
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 174 LDRVYVAEDQLLKNIQEKARVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYL 227
LD+V+VA D + K +E ++L + F EP++ E ELY D +D+++
Sbjct: 304 LDKVFVATDAVRKEYEELKKLLPEMVRF--EPTW--EELELYKDGGVAIIDQWI 353
>pdb|4AP6|A Chain A, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|B Chain B, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|C Chain C, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|D Chain D, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
Length = 422
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 174 LDRVYVAEDQLLKNIQEKARVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYL 227
LD+V+VA D + K +E ++L + F EP++ E ELY D +D+++
Sbjct: 318 LDKVFVATDAVRKEYEELKKLLPEMVRF--EPTW--EELELYKDGGVAIIDQWI 367
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
pdb|3BTN|B Chain B, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
Length = 448
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 53 GVFDYWGLLEDEKSLLEAVKQVDVRFIPSEYGAGVFVKDTDVAAFTINALDDPRTLNKLL 112
G + L++ + LLE K++DV+ I ++ K+ V ++AL D R + +
Sbjct: 166 GNMKFGTTLKNCRHLLECAKELDVQIIGVKFHVSSACKEYQV---YVHALSDARCVFDM- 221
Query: 113 HLREISHTFNM-ESSGELDGTKLYPHLKYTTISDYLDTSVPRGN 155
E T NM + G GT++ IS LD P G+
Sbjct: 222 -AGEFGFTMNMLDIGGGFTGTEIQLEEVNHVISPLLDIYFPEGS 264
>pdb|3DDY|A Chain A, Structure Of Lumazine Protein, An Optical Transponder Of
Luminescent Bacteria
Length = 186
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 175 DRVYVAEDQLLKNIQEKARVLGDQTNFEIEPSFG 208
D VY DQ L GDQ N EI P FG
Sbjct: 57 DMVYFDIDQALGTTTFDGLKEGDQVNLEIHPKFG 90
>pdb|2XF2|A Chain A, Pvc-At
pdb|2XF2|E Chain E, Pvc-At
Length = 688
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 168 EKIGKALDRVYVAEDQLLKN---IQEKARVLGDQTNFEIEPSFGVEATELYP 216
E++ +D Y A D + + + + A L +F +EPS G A+ LYP
Sbjct: 566 ERMANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYP 617
>pdb|3GEM|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
Length = 260
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 7 VLVIGAIGRIGYHFTRRSIEYGH 29
+L+ GA R+G H R +E+GH
Sbjct: 30 ILITGASQRVGLHCALRLLEHGH 52
>pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42)
Length = 212
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 130 DGTKLYPHLK-------YTTISDYLDTSVPRGNIYSFNDLVSLWE-EKIGKALDRVYVAE 181
D KL P + + DY+ +P I S ++ +E E KAL+ + V
Sbjct: 40 DSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKP 99
Query: 182 DQL---LKNIQEK--ARVLGDQTNFEIEPSFGVEATELYPDVNYTTV 223
D + ++ E+ AR LG++ NFE E +A +++P V+ ++
Sbjct: 100 DVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASI 146
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 69 EAVKQVDVRFIPSEYGAGV---FVKDTDVAAFTINALDDPRTLNKLLHLREISHTFNMES 125
++VK V V + SE V F+K + F I LD L K H+ I +F +
Sbjct: 66 DSVKLVTVNLVNSEQNQQVVEDFIKANKLT-FPI-VLDSKGELXKEYHIITIPTSFLLNE 123
Query: 126 SGELDGTKLYP 136
GE++ TK+ P
Sbjct: 124 KGEIEKTKIGP 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,085,067
Number of Sequences: 62578
Number of extensions: 297692
Number of successful extensions: 936
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 50
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)