Query 043778
Match_columns 405
No_of_seqs 179 out of 2154
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-53 4E-58 444.5 31.3 387 8-404 4-520 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 2.2E-27 4.8E-32 223.1 11.9 194 141-336 1-286 (287)
3 PLN03210 Resistant to P. syrin 99.9 1.2E-25 2.7E-30 246.4 23.8 238 136-393 184-518 (1153)
4 PRK00411 cdc6 cell division co 98.4 2.4E-06 5.1E-11 84.1 11.6 104 135-239 29-136 (394)
5 PTZ00202 tuzin; Provisional 98.3 1.1E-05 2.3E-10 78.0 12.3 73 135-216 261-336 (550)
6 TIGR02928 orc1/cdc6 family rep 98.1 2.6E-05 5.6E-10 75.9 11.7 79 136-214 15-100 (365)
7 cd01128 rho_factor Transcripti 98.1 7E-06 1.5E-10 74.9 6.9 55 156-212 15-71 (249)
8 PRK09376 rho transcription ter 98.1 4.8E-06 1E-10 79.7 5.5 54 156-211 168-223 (416)
9 PF13191 AAA_16: AAA ATPase do 97.9 1.5E-05 3.3E-10 69.4 5.3 44 138-181 2-48 (185)
10 PF13401 AAA_22: AAA domain; P 97.8 3.7E-05 8E-10 62.9 5.6 90 157-248 4-100 (131)
11 PRK08118 topology modulation p 97.8 1.3E-05 2.9E-10 68.8 2.9 35 158-193 2-37 (167)
12 PF01637 Arch_ATPase: Archaeal 97.8 2.5E-05 5.4E-10 70.5 4.3 44 138-181 1-44 (234)
13 TIGR00767 rho transcription te 97.8 8.5E-05 1.8E-09 71.5 8.0 56 156-213 167-224 (415)
14 cd00009 AAA The AAA+ (ATPases 97.7 0.00012 2.6E-09 60.4 7.5 58 139-199 1-58 (151)
15 PRK04841 transcriptional regul 97.6 0.00099 2.2E-08 72.7 15.3 68 136-214 14-83 (903)
16 PRK11331 5-methylcytosine-spec 97.6 0.00033 7.3E-09 68.6 10.1 69 136-207 175-243 (459)
17 TIGR03015 pepcterm_ATPase puta 97.6 0.00097 2.1E-08 61.8 12.7 58 155-216 41-98 (269)
18 TIGR00635 ruvB Holliday juncti 97.4 0.00019 4.2E-09 68.0 5.0 46 136-181 4-54 (305)
19 COG1474 CDC6 Cdc6-related prot 97.4 0.0015 3.3E-08 63.1 10.9 100 136-238 17-120 (366)
20 PF05496 RuvB_N: Holliday junc 97.3 0.00028 6.2E-09 62.5 5.0 50 136-188 24-78 (233)
21 PF13207 AAA_17: AAA domain; P 97.3 0.00019 4.1E-09 57.9 3.5 23 159-181 1-23 (121)
22 KOG2028 ATPase related to the 97.3 0.00069 1.5E-08 63.6 7.0 59 133-199 141-199 (554)
23 PRK07261 topology modulation p 97.3 0.00058 1.3E-08 58.9 6.1 35 159-194 2-37 (171)
24 COG2909 MalT ATP-dependent tra 97.3 0.01 2.2E-07 61.8 15.7 65 146-214 25-91 (894)
25 COG2256 MGS1 ATPase related to 97.2 0.00058 1.3E-08 65.0 6.1 60 123-188 17-76 (436)
26 TIGR02903 spore_lon_C ATP-depe 97.2 0.004 8.7E-08 64.6 12.8 46 136-181 154-199 (615)
27 PRK00080 ruvB Holliday junctio 97.2 0.0005 1.1E-08 65.9 4.9 46 136-181 25-75 (328)
28 PRK13342 recombination factor 97.2 0.0011 2.3E-08 65.7 7.3 46 136-181 12-60 (413)
29 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00079 1.7E-08 64.2 5.5 46 136-181 51-102 (361)
30 PRK06696 uridine kinase; Valid 97.0 0.0011 2.4E-08 59.8 5.5 41 141-181 3-46 (223)
31 PF05621 TniB: Bacterial TniB 97.0 0.042 9E-07 51.2 15.5 81 136-217 34-124 (302)
32 PF05729 NACHT: NACHT domain 96.9 0.0014 3.1E-08 55.6 5.3 41 158-199 1-45 (166)
33 PRK12402 replication factor C 96.9 0.0012 2.6E-08 63.3 5.2 46 136-181 15-60 (337)
34 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0016 3.5E-08 58.6 5.6 54 141-197 22-75 (226)
35 PRK06547 hypothetical protein; 96.9 0.0017 3.7E-08 56.0 5.1 35 147-181 5-39 (172)
36 PRK00440 rfc replication facto 96.8 0.005 1.1E-07 58.5 8.6 46 136-181 17-62 (319)
37 PLN03025 replication factor C 96.8 0.0039 8.5E-08 59.4 7.7 46 136-181 13-58 (319)
38 CHL00095 clpC Clp protease ATP 96.8 0.0015 3.3E-08 70.2 5.1 46 136-181 179-224 (821)
39 PTZ00112 origin recognition co 96.8 0.0098 2.1E-07 62.6 10.4 80 135-214 754-842 (1164)
40 PRK15455 PrkA family serine pr 96.7 0.002 4.4E-08 64.8 5.2 46 136-181 76-127 (644)
41 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0018 4E-08 69.5 5.2 46 136-181 187-232 (852)
42 PF00485 PRK: Phosphoribulokin 96.7 0.0014 3E-08 57.8 3.4 23 159-181 1-23 (194)
43 PTZ00301 uridine kinase; Provi 96.7 0.0021 4.6E-08 57.2 4.6 25 157-181 3-27 (210)
44 PRK12727 flagellar biosynthesi 96.7 0.048 1E-06 54.8 14.4 26 156-181 349-374 (559)
45 COG0466 Lon ATP-dependent Lon 96.7 0.002 4.3E-08 65.6 4.8 50 136-188 323-378 (782)
46 KOG2543 Origin recognition com 96.7 0.015 3.2E-07 55.3 9.9 74 135-214 5-81 (438)
47 PRK08233 hypothetical protein; 96.6 0.0018 3.9E-08 56.1 3.6 25 157-181 3-27 (182)
48 PRK04195 replication factor C 96.6 0.0019 4.1E-08 65.3 4.2 46 136-181 14-63 (482)
49 TIGR02639 ClpA ATP-dependent C 96.6 0.0025 5.4E-08 67.7 5.3 46 136-181 182-227 (731)
50 PHA00729 NTP-binding motif con 96.6 0.003 6.4E-08 56.5 4.9 35 147-181 7-41 (226)
51 PF13238 AAA_18: AAA domain; P 96.6 0.0018 3.9E-08 52.4 3.2 21 160-180 1-21 (129)
52 PRK05480 uridine/cytidine kina 96.6 0.002 4.3E-08 57.4 3.7 26 156-181 5-30 (209)
53 PRK13341 recombination factor 96.6 0.0027 5.9E-08 66.7 5.2 46 136-181 28-76 (725)
54 PRK10865 protein disaggregatio 96.6 0.0026 5.7E-08 68.5 5.2 46 136-181 178-223 (857)
55 PF13173 AAA_14: AAA domain 96.6 0.003 6.4E-08 51.6 4.4 39 157-199 2-40 (128)
56 COG1618 Predicted nucleotide k 96.5 0.0027 5.9E-08 53.0 3.8 25 157-181 5-29 (179)
57 PRK07003 DNA polymerase III su 96.5 0.089 1.9E-06 55.0 15.3 46 136-181 16-62 (830)
58 TIGR01242 26Sp45 26S proteasom 96.5 0.0033 7.2E-08 61.1 5.0 46 136-181 122-180 (364)
59 KOG2004 Mitochondrial ATP-depe 96.5 0.03 6.5E-07 57.3 11.5 47 135-181 410-462 (906)
60 PRK05541 adenylylsulfate kinas 96.5 0.0033 7.3E-08 54.3 4.4 36 156-194 6-41 (176)
61 COG0572 Udk Uridine kinase [Nu 96.5 0.009 1.9E-07 52.9 6.9 26 156-181 7-32 (218)
62 PRK03992 proteasome-activating 96.5 0.0034 7.4E-08 61.5 4.7 46 136-181 131-189 (389)
63 PF13671 AAA_33: AAA domain; P 96.5 0.0027 5.9E-08 52.6 3.5 23 159-181 1-23 (143)
64 TIGR00235 udk uridine kinase. 96.5 0.0025 5.4E-08 56.7 3.5 26 156-181 5-30 (207)
65 cd02019 NK Nucleoside/nucleoti 96.5 0.0026 5.7E-08 45.8 2.9 22 159-180 1-22 (69)
66 PRK14962 DNA polymerase III su 96.4 0.0043 9.2E-08 62.2 5.4 46 136-181 14-60 (472)
67 PHA02544 44 clamp loader, smal 96.4 0.0043 9.4E-08 59.0 5.2 46 136-181 21-67 (316)
68 PRK07667 uridine kinase; Provi 96.4 0.0043 9.3E-08 54.6 4.8 37 145-181 3-41 (193)
69 PRK06762 hypothetical protein; 96.4 0.0029 6.4E-08 54.1 3.6 25 157-181 2-26 (166)
70 PRK09270 nucleoside triphospha 96.4 0.0058 1.3E-07 55.3 5.5 27 155-181 31-57 (229)
71 PRK14961 DNA polymerase III su 96.4 0.0052 1.1E-07 59.7 5.5 46 136-181 16-62 (363)
72 TIGR02881 spore_V_K stage V sp 96.4 0.0055 1.2E-07 56.7 5.4 45 137-181 7-66 (261)
73 PF00004 AAA: ATPase family as 96.4 0.0031 6.8E-08 51.2 3.3 22 160-181 1-22 (132)
74 KOG1532 GTPase XAB1, interacts 96.4 0.017 3.7E-07 52.4 8.1 61 156-217 18-87 (366)
75 TIGR00554 panK_bact pantothena 96.4 0.026 5.6E-07 52.7 9.7 27 155-181 60-86 (290)
76 smart00382 AAA ATPases associa 96.3 0.0053 1.1E-07 49.9 4.6 38 158-198 3-40 (148)
77 TIGR03346 chaperone_ClpB ATP-d 96.3 0.0048 1E-07 66.7 5.3 46 136-181 173-218 (852)
78 TIGR02237 recomb_radB DNA repa 96.3 0.01 2.2E-07 52.8 6.6 48 156-207 11-58 (209)
79 COG2255 RuvB Holliday junction 96.3 0.0069 1.5E-07 55.3 5.3 46 136-181 26-76 (332)
80 PRK03839 putative kinase; Prov 96.2 0.0038 8.3E-08 54.2 3.4 23 159-181 2-24 (180)
81 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0041 8.9E-08 54.2 3.5 26 156-181 2-27 (188)
82 KOG0991 Replication factor C, 96.2 0.0072 1.6E-07 53.5 4.8 69 136-205 27-95 (333)
83 PRK11034 clpA ATP-dependent Cl 96.2 0.0057 1.2E-07 64.7 5.0 45 136-180 186-230 (758)
84 cd02023 UMPK Uridine monophosp 96.2 0.0034 7.4E-08 55.4 2.9 22 159-180 1-22 (198)
85 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.017 3.7E-07 52.3 7.6 51 156-207 18-72 (235)
86 PRK14963 DNA polymerase III su 96.2 0.0055 1.2E-07 61.9 4.7 46 136-181 14-60 (504)
87 PF00448 SRP54: SRP54-type pro 96.2 0.017 3.8E-07 50.8 7.2 57 157-216 1-58 (196)
88 cd02025 PanK Pantothenate kina 96.2 0.0035 7.5E-08 56.4 2.8 23 159-181 1-23 (220)
89 PRK08727 hypothetical protein; 96.2 0.013 2.9E-07 53.1 6.6 56 139-197 23-78 (233)
90 PRK08903 DnaA regulatory inact 96.2 0.011 2.4E-07 53.3 6.0 43 139-181 22-66 (227)
91 PRK08084 DNA replication initi 96.1 0.017 3.6E-07 52.6 7.1 60 136-198 23-83 (235)
92 PRK05564 DNA polymerase III su 96.1 0.026 5.7E-07 53.6 8.7 69 136-204 4-77 (313)
93 TIGR00763 lon ATP-dependent pr 96.1 0.026 5.6E-07 60.5 9.4 46 136-181 320-371 (775)
94 PRK05439 pantothenate kinase; 96.1 0.052 1.1E-06 51.2 10.3 26 156-181 85-110 (311)
95 PRK04040 adenylate kinase; Pro 96.1 0.0056 1.2E-07 53.6 3.5 25 157-181 2-26 (188)
96 PRK14957 DNA polymerase III su 96.1 0.0087 1.9E-07 60.8 5.3 46 136-181 16-62 (546)
97 cd02024 NRK1 Nicotinamide ribo 96.1 0.0045 9.8E-08 54.0 2.9 23 159-181 1-23 (187)
98 PRK06893 DNA replication initi 96.1 0.016 3.5E-07 52.4 6.6 39 156-197 38-76 (229)
99 PRK05896 DNA polymerase III su 96.0 0.0089 1.9E-07 61.0 5.3 46 136-181 16-62 (605)
100 PRK14956 DNA polymerase III su 96.0 0.009 2E-07 59.4 5.1 46 136-181 18-64 (484)
101 PRK14955 DNA polymerase III su 96.0 0.0091 2E-07 58.7 5.2 46 136-181 16-62 (397)
102 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.0051 1.1E-07 53.4 2.9 23 159-181 1-23 (183)
103 TIGR02322 phosphon_PhnN phosph 96.0 0.0059 1.3E-07 52.9 3.3 24 158-181 2-25 (179)
104 cd01393 recA_like RecA is a b 96.0 0.029 6.3E-07 50.5 8.0 48 156-206 18-71 (226)
105 PRK13531 regulatory ATPase Rav 96.0 0.012 2.7E-07 58.3 5.8 44 136-181 20-63 (498)
106 PRK09361 radB DNA repair and r 95.9 0.024 5.2E-07 51.0 7.1 46 156-205 22-67 (225)
107 TIGR03263 guanyl_kin guanylate 95.9 0.0062 1.3E-07 52.7 3.1 23 158-180 2-24 (180)
108 COG1419 FlhF Flagellar GTP-bin 95.9 0.011 2.4E-07 56.9 5.0 72 142-216 184-262 (407)
109 COG1428 Deoxynucleoside kinase 95.9 0.0071 1.5E-07 52.9 3.3 25 157-181 4-28 (216)
110 cd02028 UMPK_like Uridine mono 95.9 0.0061 1.3E-07 52.9 2.9 23 159-181 1-23 (179)
111 PF12061 DUF3542: Protein of u 95.9 0.011 2.5E-07 54.3 4.7 76 9-91 298-373 (402)
112 PF00625 Guanylate_kin: Guanyl 95.9 0.013 2.7E-07 51.1 4.9 36 157-195 2-37 (183)
113 PRK00625 shikimate kinase; Pro 95.9 0.0068 1.5E-07 52.3 3.2 23 159-181 2-24 (173)
114 PRK14960 DNA polymerase III su 95.9 0.012 2.5E-07 60.5 5.3 46 136-181 15-61 (702)
115 cd01394 radB RadB. The archaea 95.9 0.032 7E-07 49.9 7.7 43 156-201 18-60 (218)
116 cd02020 CMPK Cytidine monophos 95.9 0.0065 1.4E-07 50.5 2.9 23 159-181 1-23 (147)
117 PRK06217 hypothetical protein; 95.8 0.0078 1.7E-07 52.4 3.4 23 159-181 3-25 (183)
118 PF00158 Sigma54_activat: Sigm 95.8 0.015 3.2E-07 49.9 5.0 44 138-181 1-46 (168)
119 PRK00131 aroK shikimate kinase 95.8 0.0082 1.8E-07 51.5 3.5 25 157-181 4-28 (175)
120 TIGR00390 hslU ATP-dependent p 95.8 0.031 6.6E-07 54.5 7.5 46 136-181 12-71 (441)
121 TIGR00150 HI0065_YjeE ATPase, 95.8 0.017 3.8E-07 47.2 5.0 38 144-181 7-46 (133)
122 CHL00081 chlI Mg-protoporyphyr 95.8 0.013 2.8E-07 56.2 4.9 46 136-181 17-62 (350)
123 COG1703 ArgK Putative periplas 95.8 0.012 2.5E-07 54.3 4.3 63 145-208 37-101 (323)
124 COG1102 Cmk Cytidylate kinase 95.8 0.0076 1.7E-07 50.4 2.8 44 159-216 2-45 (179)
125 PF03308 ArgK: ArgK protein; 95.8 0.011 2.3E-07 53.7 4.0 62 144-206 14-77 (266)
126 PRK00300 gmk guanylate kinase; 95.8 0.0082 1.8E-07 53.2 3.3 25 157-181 5-29 (205)
127 PRK00889 adenylylsulfate kinas 95.8 0.0099 2.2E-07 51.3 3.7 25 157-181 4-28 (175)
128 cd02021 GntK Gluconate kinase 95.7 0.0076 1.6E-07 50.5 2.9 22 159-180 1-22 (150)
129 PRK10751 molybdopterin-guanine 95.7 0.0099 2.1E-07 51.0 3.5 26 156-181 5-30 (173)
130 PF01583 APS_kinase: Adenylyls 95.7 0.011 2.4E-07 49.8 3.7 36 157-195 2-37 (156)
131 PRK10787 DNA-binding ATP-depen 95.7 0.026 5.6E-07 60.2 7.3 47 135-181 321-373 (784)
132 PRK14964 DNA polymerase III su 95.7 0.015 3.2E-07 58.3 5.1 44 136-179 13-57 (491)
133 cd00227 CPT Chloramphenicol (C 95.7 0.01 2.2E-07 51.2 3.6 24 158-181 3-26 (175)
134 PF03205 MobB: Molybdopterin g 95.7 0.01 2.2E-07 49.2 3.4 39 158-198 1-39 (140)
135 COG0563 Adk Adenylate kinase a 95.7 0.0091 2E-07 51.7 3.2 23 159-181 2-24 (178)
136 COG1936 Predicted nucleotide k 95.7 0.0085 1.8E-07 50.7 2.8 20 159-178 2-21 (180)
137 PRK10536 hypothetical protein; 95.7 0.028 6.2E-07 51.2 6.3 42 137-180 56-97 (262)
138 PF07728 AAA_5: AAA domain (dy 95.6 0.01 2.2E-07 49.0 3.2 43 160-208 2-44 (139)
139 PTZ00454 26S protease regulato 95.6 0.016 3.4E-07 56.8 5.0 46 136-181 145-203 (398)
140 cd01120 RecA-like_NTPases RecA 95.6 0.014 3.1E-07 49.1 4.1 39 159-200 1-39 (165)
141 CHL00181 cbbX CbbX; Provisiona 95.6 0.019 4.1E-07 53.8 5.3 46 136-181 23-83 (287)
142 PRK10078 ribose 1,5-bisphospho 95.6 0.0098 2.1E-07 51.9 3.2 24 158-181 3-26 (186)
143 cd00071 GMPK Guanosine monopho 95.6 0.0094 2E-07 49.3 2.8 22 159-180 1-22 (137)
144 PF00910 RNA_helicase: RNA hel 95.6 0.0091 2E-07 47.0 2.6 22 160-181 1-22 (107)
145 TIGR00073 hypB hydrogenase acc 95.6 0.014 3E-07 51.9 4.1 31 151-181 16-46 (207)
146 COG1124 DppF ABC-type dipeptid 95.6 0.016 3.6E-07 51.8 4.4 25 156-180 32-56 (252)
147 PRK14527 adenylate kinase; Pro 95.6 0.012 2.6E-07 51.6 3.7 26 156-181 5-30 (191)
148 PRK14949 DNA polymerase III su 95.6 0.016 3.5E-07 61.4 5.1 46 136-181 16-62 (944)
149 COG0467 RAD55 RecA-superfamily 95.6 0.014 3.1E-07 53.8 4.3 51 156-211 22-72 (260)
150 PRK13947 shikimate kinase; Pro 95.6 0.01 2.2E-07 50.9 3.1 23 159-181 3-25 (171)
151 TIGR02397 dnaX_nterm DNA polym 95.6 0.02 4.4E-07 55.3 5.5 46 136-181 14-60 (355)
152 PRK14530 adenylate kinase; Pro 95.6 0.011 2.3E-07 53.0 3.3 23 159-181 5-27 (215)
153 PRK03846 adenylylsulfate kinas 95.6 0.013 2.8E-07 51.8 3.7 27 155-181 22-48 (198)
154 PF08477 Miro: Miro-like prote 95.6 0.012 2.6E-07 46.9 3.2 22 160-181 2-23 (119)
155 cd00820 PEPCK_HprK Phosphoenol 95.6 0.012 2.6E-07 46.1 3.1 22 157-178 15-36 (107)
156 PRK00771 signal recognition pa 95.6 0.21 4.6E-06 49.5 12.5 57 156-216 94-152 (437)
157 PRK13949 shikimate kinase; Pro 95.5 0.011 2.4E-07 50.8 3.1 23 159-181 3-25 (169)
158 PF04665 Pox_A32: Poxvirus A32 95.5 0.019 4.2E-07 51.9 4.7 36 157-195 13-48 (241)
159 PRK14958 DNA polymerase III su 95.5 0.019 4.1E-07 58.2 5.2 46 136-181 16-62 (509)
160 PRK14951 DNA polymerase III su 95.5 0.019 4.2E-07 59.2 5.3 46 136-181 16-62 (618)
161 TIGR02030 BchI-ChlI magnesium 95.5 0.022 4.8E-07 54.5 5.3 45 136-180 4-48 (337)
162 PRK14970 DNA polymerase III su 95.5 0.021 4.6E-07 55.6 5.3 46 136-181 17-63 (367)
163 PRK05703 flhF flagellar biosyn 95.5 0.22 4.7E-06 49.4 12.4 39 157-196 221-259 (424)
164 COG3640 CooC CO dehydrogenase 95.5 0.027 5.8E-07 50.1 5.3 43 159-203 2-44 (255)
165 COG1222 RPT1 ATP-dependent 26S 95.5 0.023 4.9E-07 53.7 5.1 44 138-181 153-209 (406)
166 PRK10463 hydrogenase nickel in 95.5 0.025 5.5E-07 52.6 5.4 31 151-181 98-128 (290)
167 TIGR02902 spore_lonB ATP-depen 95.5 0.019 4.2E-07 58.6 5.1 45 136-180 65-109 (531)
168 TIGR00764 lon_rel lon-related 95.4 0.055 1.2E-06 56.1 8.3 75 136-215 18-92 (608)
169 PRK12323 DNA polymerase III su 95.4 0.021 4.5E-07 58.7 5.1 46 136-181 16-62 (700)
170 TIGR01425 SRP54_euk signal rec 95.4 0.16 3.5E-06 50.0 11.1 26 156-181 99-124 (429)
171 PRK08691 DNA polymerase III su 95.4 0.021 4.5E-07 59.2 5.1 46 136-181 16-62 (709)
172 TIGR02236 recomb_radA DNA repa 95.4 0.069 1.5E-06 50.7 8.4 57 156-214 94-154 (310)
173 PRK05201 hslU ATP-dependent pr 95.4 0.046 1E-06 53.4 7.2 46 136-181 15-74 (443)
174 PRK09087 hypothetical protein; 95.4 0.036 7.8E-07 50.0 6.1 26 156-181 43-68 (226)
175 TIGR01313 therm_gnt_kin carboh 95.4 0.011 2.3E-07 50.4 2.6 22 160-181 1-22 (163)
176 TIGR01287 nifH nitrogenase iro 95.4 0.012 2.5E-07 54.9 3.0 24 158-181 1-24 (275)
177 PTZ00361 26 proteosome regulat 95.4 0.02 4.3E-07 56.7 4.8 46 136-181 183-241 (438)
178 PRK09112 DNA polymerase III su 95.4 0.029 6.4E-07 54.0 5.8 46 136-181 23-69 (351)
179 cd00464 SK Shikimate kinase (S 95.4 0.013 2.9E-07 49.1 3.1 22 160-181 2-23 (154)
180 PF07726 AAA_3: ATPase family 95.4 0.0084 1.8E-07 48.4 1.7 27 160-189 2-28 (131)
181 PRK04301 radA DNA repair and r 95.4 0.066 1.4E-06 51.0 8.1 57 156-214 101-161 (317)
182 PRK13975 thymidylate kinase; P 95.4 0.015 3.3E-07 51.1 3.4 24 158-181 3-26 (196)
183 PRK14737 gmk guanylate kinase; 95.3 0.017 3.6E-07 50.5 3.6 25 156-180 3-27 (186)
184 PRK13765 ATP-dependent proteas 95.3 0.039 8.5E-07 57.2 6.8 74 136-214 31-104 (637)
185 PRK14954 DNA polymerase III su 95.3 0.023 5E-07 58.7 5.1 46 136-181 16-62 (620)
186 PRK05057 aroK shikimate kinase 95.3 0.017 3.6E-07 49.8 3.5 25 157-181 4-28 (172)
187 PRK07940 DNA polymerase III su 95.3 0.027 5.9E-07 55.1 5.3 45 136-180 5-59 (394)
188 PRK06645 DNA polymerase III su 95.3 0.025 5.4E-07 57.1 5.1 46 136-181 21-67 (507)
189 PRK12339 2-phosphoglycerate ki 95.3 0.018 4E-07 50.7 3.7 25 157-181 3-27 (197)
190 PRK06620 hypothetical protein; 95.3 0.042 9.1E-07 49.1 6.1 24 158-181 45-68 (214)
191 PRK14738 gmk guanylate kinase; 95.3 0.017 3.8E-07 51.3 3.6 24 156-179 12-35 (206)
192 COG1126 GlnQ ABC-type polar am 95.3 0.026 5.6E-07 49.7 4.4 36 156-195 27-62 (240)
193 cd02027 APSK Adenosine 5'-phos 95.3 0.015 3.2E-07 48.9 2.9 23 159-181 1-23 (149)
194 PRK14969 DNA polymerase III su 95.2 0.028 6E-07 57.3 5.3 46 136-181 16-62 (527)
195 PRK12608 transcription termina 95.2 0.092 2E-06 50.6 8.5 70 145-216 120-192 (380)
196 KOG2227 Pre-initiation complex 95.2 0.5 1.1E-05 46.4 13.4 104 135-241 149-256 (529)
197 PF10443 RNA12: RNA12 protein; 95.2 0.078 1.7E-06 51.6 8.0 68 141-215 1-72 (431)
198 PRK07994 DNA polymerase III su 95.2 0.028 6E-07 58.2 5.3 46 136-181 16-62 (647)
199 TIGR03689 pup_AAA proteasome A 95.2 0.021 4.5E-07 57.5 4.2 46 136-181 182-240 (512)
200 TIGR00176 mobB molybdopterin-g 95.2 0.016 3.5E-07 49.0 2.9 23 159-181 1-23 (155)
201 PLN02200 adenylate kinase fami 95.2 0.02 4.4E-07 51.9 3.7 26 156-181 42-67 (234)
202 cd02117 NifH_like This family 95.2 0.017 3.8E-07 51.5 3.2 24 158-181 1-24 (212)
203 COG0194 Gmk Guanylate kinase [ 95.1 0.021 4.5E-07 49.1 3.4 24 157-180 4-27 (191)
204 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.078 1.7E-06 48.2 7.5 49 156-209 20-68 (237)
205 PF13521 AAA_28: AAA domain; P 95.1 0.016 3.5E-07 49.3 2.9 20 160-179 2-21 (163)
206 PRK09825 idnK D-gluconate kina 95.1 0.019 4.1E-07 49.7 3.3 24 158-181 4-27 (176)
207 PRK13407 bchI magnesium chelat 95.1 0.029 6.4E-07 53.5 4.8 44 136-179 8-51 (334)
208 PF00005 ABC_tran: ABC transpo 95.1 0.018 3.9E-07 47.3 3.0 35 157-195 11-45 (137)
209 PRK05642 DNA replication initi 95.1 0.069 1.5E-06 48.5 7.1 38 157-197 45-82 (234)
210 PF03266 NTPase_1: NTPase; In 95.1 0.018 4E-07 49.3 3.1 22 160-181 2-23 (168)
211 PRK04182 cytidylate kinase; Pr 95.1 0.02 4.3E-07 49.3 3.4 23 159-181 2-24 (180)
212 TIGR02880 cbbX_cfxQ probable R 95.1 0.036 7.8E-07 51.9 5.3 45 137-181 23-82 (284)
213 PF14532 Sigma54_activ_2: Sigm 95.1 0.029 6.2E-07 46.4 4.1 43 139-181 1-45 (138)
214 PF06309 Torsin: Torsin; Inte 95.1 0.041 8.9E-07 44.3 4.7 45 136-180 25-76 (127)
215 PRK09111 DNA polymerase III su 95.0 0.033 7E-07 57.5 5.2 46 136-181 24-70 (598)
216 PRK13232 nifH nitrogenase redu 95.0 0.019 4.1E-07 53.5 3.2 24 158-181 2-25 (273)
217 PRK14952 DNA polymerase III su 95.0 0.035 7.6E-07 57.0 5.3 46 136-181 13-59 (584)
218 COG1224 TIP49 DNA helicase TIP 95.0 0.056 1.2E-06 51.1 6.1 52 136-188 39-95 (450)
219 cd01133 F1-ATPase_beta F1 ATP 95.0 0.038 8.3E-07 51.0 5.0 53 156-211 68-122 (274)
220 PRK13948 shikimate kinase; Pro 95.0 0.024 5.3E-07 49.2 3.6 26 156-181 9-34 (182)
221 PRK13230 nitrogenase reductase 95.0 0.02 4.3E-07 53.5 3.3 24 158-181 2-25 (279)
222 PF05673 DUF815: Protein of un 95.0 0.044 9.6E-07 49.4 5.2 46 136-181 27-76 (249)
223 PLN02348 phosphoribulokinase 95.0 0.034 7.3E-07 53.8 4.8 27 155-181 47-73 (395)
224 PRK06761 hypothetical protein; 95.0 0.052 1.1E-06 50.5 5.8 24 158-181 4-27 (282)
225 PF03193 DUF258: Protein of un 94.9 0.042 9E-07 46.5 4.7 36 143-181 24-59 (161)
226 PRK13946 shikimate kinase; Pro 94.9 0.024 5.3E-07 49.3 3.5 25 157-181 10-34 (184)
227 TIGR01241 FtsH_fam ATP-depende 94.9 0.036 7.9E-07 56.2 5.2 46 136-181 55-112 (495)
228 cd01672 TMPK Thymidine monopho 94.9 0.022 4.9E-07 49.8 3.3 23 159-181 2-24 (200)
229 PF03029 ATP_bind_1: Conserved 94.9 0.031 6.8E-07 50.8 4.2 20 162-181 1-20 (238)
230 TIGR02173 cyt_kin_arch cytidyl 94.9 0.024 5.2E-07 48.5 3.3 23 159-181 2-24 (171)
231 PRK09435 membrane ATPase/prote 94.9 0.064 1.4E-06 51.1 6.4 37 145-181 42-80 (332)
232 cd02040 NifH NifH gene encodes 94.9 0.022 4.7E-07 52.8 3.2 24 158-181 2-25 (270)
233 PRK14532 adenylate kinase; Pro 94.9 0.023 4.9E-07 49.6 3.1 22 160-181 3-24 (188)
234 cd01131 PilT Pilus retraction 94.9 0.033 7.2E-07 49.1 4.2 24 158-181 2-25 (198)
235 cd02029 PRK_like Phosphoribulo 94.9 0.13 2.8E-06 47.2 8.1 80 159-241 1-86 (277)
236 PRK13236 nitrogenase reductase 94.9 0.024 5.2E-07 53.4 3.5 28 154-181 3-30 (296)
237 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.13 2.8E-06 46.3 8.2 53 156-214 19-71 (229)
238 PF08298 AAA_PrkA: PrkA AAA do 94.9 0.05 1.1E-06 51.7 5.5 46 136-181 61-112 (358)
239 PF08423 Rad51: Rad51; InterP 94.9 0.1 2.2E-06 48.0 7.6 56 156-213 37-96 (256)
240 COG3899 Predicted ATPase [Gene 94.9 0.083 1.8E-06 57.0 7.9 44 138-181 2-48 (849)
241 PF10662 PduV-EutP: Ethanolami 94.8 0.04 8.7E-07 45.6 4.2 24 158-181 2-25 (143)
242 PRK06305 DNA polymerase III su 94.8 0.044 9.6E-07 54.8 5.4 46 136-181 17-63 (451)
243 PRK07471 DNA polymerase III su 94.8 0.044 9.6E-07 53.1 5.2 46 136-181 19-65 (365)
244 cd01428 ADK Adenylate kinase ( 94.8 0.024 5.2E-07 49.6 3.2 22 160-181 2-23 (194)
245 COG1116 TauB ABC-type nitrate/ 94.8 0.025 5.4E-07 50.9 3.2 24 156-179 28-51 (248)
246 PRK08356 hypothetical protein; 94.8 0.027 5.8E-07 49.6 3.4 22 157-178 5-26 (195)
247 PLN02796 D-glycerate 3-kinase 94.8 0.028 6E-07 53.5 3.7 26 156-181 99-124 (347)
248 PF13245 AAA_19: Part of AAA d 94.8 0.033 7.2E-07 40.9 3.3 24 156-179 9-33 (76)
249 COG1763 MobB Molybdopterin-gua 94.8 0.024 5.2E-07 48.0 2.9 25 157-181 2-26 (161)
250 COG0237 CoaE Dephospho-CoA kin 94.8 0.027 5.8E-07 49.7 3.3 23 157-179 2-24 (201)
251 KOG0730 AAA+-type ATPase [Post 94.8 0.32 6.9E-06 49.7 11.1 46 140-188 438-496 (693)
252 COG0003 ArsA Predicted ATPase 94.8 0.053 1.2E-06 51.4 5.5 48 157-207 2-49 (322)
253 PRK12377 putative replication 94.8 0.022 4.7E-07 52.1 2.8 38 156-196 100-137 (248)
254 PRK14531 adenylate kinase; Pro 94.7 0.029 6.2E-07 48.9 3.3 24 158-181 3-26 (183)
255 cd02022 DPCK Dephospho-coenzym 94.7 0.024 5.2E-07 49.1 2.9 21 159-179 1-21 (179)
256 TIGR03499 FlhF flagellar biosy 94.7 0.029 6.3E-07 52.5 3.6 26 156-181 193-218 (282)
257 PF01078 Mg_chelatase: Magnesi 94.7 0.056 1.2E-06 47.6 5.1 42 136-179 3-44 (206)
258 cd01124 KaiC KaiC is a circadi 94.7 0.037 8.1E-07 48.0 4.1 45 159-208 1-45 (187)
259 PTZ00088 adenylate kinase 1; P 94.7 0.026 5.6E-07 51.0 3.1 23 159-181 8-30 (229)
260 cd03269 ABC_putative_ATPase Th 94.7 0.044 9.6E-07 48.7 4.6 36 156-195 25-60 (210)
261 TIGR03574 selen_PSTK L-seryl-t 94.7 0.023 5E-07 52.1 2.9 23 159-181 1-23 (249)
262 PF13086 AAA_11: AAA domain; P 94.7 0.075 1.6E-06 47.6 6.2 53 159-211 19-75 (236)
263 PRK14950 DNA polymerase III su 94.7 0.046 1E-06 56.6 5.3 46 136-181 16-62 (585)
264 PLN02165 adenylate isopentenyl 94.7 0.019 4.2E-07 54.3 2.3 30 152-181 38-67 (334)
265 COG1223 Predicted ATPase (AAA+ 94.7 0.049 1.1E-06 49.2 4.6 46 136-181 121-175 (368)
266 PRK14722 flhF flagellar biosyn 94.7 0.081 1.7E-06 51.2 6.6 60 156-216 136-196 (374)
267 PRK06067 flagellar accessory p 94.7 0.1 2.2E-06 47.2 7.0 53 156-214 24-76 (234)
268 cd03116 MobB Molybdenum is an 94.7 0.032 7E-07 47.3 3.4 24 158-181 2-25 (159)
269 PRK13695 putative NTPase; Prov 94.7 0.037 8.1E-07 47.6 3.9 23 159-181 2-24 (174)
270 cd04139 RalA_RalB RalA/RalB su 94.7 0.027 5.9E-07 47.4 3.0 23 159-181 2-24 (164)
271 PRK01184 hypothetical protein; 94.7 0.027 5.9E-07 48.9 3.1 21 158-179 2-22 (184)
272 PLN02318 phosphoribulokinase/u 94.7 0.039 8.5E-07 56.0 4.5 26 155-180 63-88 (656)
273 cd03225 ABC_cobalt_CbiO_domain 94.7 0.028 6.1E-07 50.0 3.2 26 156-181 26-51 (211)
274 KOG3347 Predicted nucleotide k 94.6 0.027 5.8E-07 46.5 2.6 22 158-179 8-29 (176)
275 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.6 0.029 6.2E-07 50.2 3.2 35 156-194 29-63 (218)
276 PF02562 PhoH: PhoH-like prote 94.6 0.04 8.6E-07 48.7 3.9 52 141-195 5-56 (205)
277 COG2019 AdkA Archaeal adenylat 94.6 0.033 7.2E-07 46.9 3.2 23 157-179 4-26 (189)
278 PF13604 AAA_30: AAA domain; P 94.6 0.062 1.3E-06 47.4 5.2 35 147-181 8-42 (196)
279 TIGR00064 ftsY signal recognit 94.6 0.053 1.1E-06 50.4 4.9 26 156-181 71-96 (272)
280 TIGR00750 lao LAO/AO transport 94.6 0.065 1.4E-06 50.6 5.7 37 145-181 20-58 (300)
281 PRK03731 aroL shikimate kinase 94.6 0.031 6.8E-07 47.9 3.2 24 158-181 3-26 (171)
282 COG1100 GTPase SAR1 and relate 94.6 0.026 5.6E-07 50.4 2.8 24 158-181 6-29 (219)
283 PRK13235 nifH nitrogenase redu 94.6 0.029 6.3E-07 52.2 3.2 24 158-181 2-25 (274)
284 cd02026 PRK Phosphoribulokinas 94.6 0.026 5.7E-07 52.4 2.9 23 159-181 1-23 (273)
285 PRK15453 phosphoribulokinase; 94.6 0.034 7.4E-07 51.3 3.5 26 156-181 4-29 (290)
286 PF01926 MMR_HSR1: 50S ribosom 94.6 0.033 7.1E-07 44.3 3.1 21 160-180 2-22 (116)
287 TIGR00960 3a0501s02 Type II (G 94.6 0.03 6.5E-07 50.1 3.1 35 156-194 28-62 (216)
288 cd03229 ABC_Class3 This class 94.6 0.032 6.8E-07 48.3 3.2 35 156-194 25-59 (178)
289 COG1136 SalX ABC-type antimicr 94.5 0.032 6.9E-07 49.9 3.2 36 156-195 30-65 (226)
290 cd03265 ABC_DrrA DrrA is the A 94.5 0.051 1.1E-06 48.7 4.6 36 156-195 25-60 (220)
291 TIGR01166 cbiO cobalt transpor 94.5 0.031 6.7E-07 48.9 3.1 35 156-194 17-51 (190)
292 PRK11889 flhF flagellar biosyn 94.5 0.032 7E-07 54.0 3.4 26 156-181 240-265 (436)
293 PRK13233 nifH nitrogenase redu 94.5 0.03 6.5E-07 52.1 3.2 24 158-181 3-26 (275)
294 TIGR00602 rad24 checkpoint pro 94.5 0.047 1E-06 56.5 4.8 46 136-181 84-134 (637)
295 smart00072 GuKc Guanylate kina 94.5 0.045 9.8E-07 47.6 4.1 24 157-180 2-25 (184)
296 KOG1969 DNA replication checkp 94.5 0.079 1.7E-06 54.5 6.2 52 156-213 325-376 (877)
297 TIGR02239 recomb_RAD51 DNA rep 94.5 0.14 2.9E-06 48.8 7.6 58 156-215 95-156 (316)
298 TIGR00041 DTMP_kinase thymidyl 94.5 0.036 7.7E-07 48.6 3.4 24 158-181 4-27 (195)
299 PRK08099 bifunctional DNA-bind 94.5 0.032 6.9E-07 54.7 3.4 27 155-181 217-243 (399)
300 PHA02530 pseT polynucleotide k 94.5 0.034 7.5E-07 52.4 3.6 24 158-181 3-26 (300)
301 PRK14493 putative bifunctional 94.5 0.034 7.3E-07 51.6 3.4 24 158-181 2-25 (274)
302 PRK14723 flhF flagellar biosyn 94.5 2.1 4.4E-05 45.4 16.6 58 157-216 185-244 (767)
303 PRK05973 replicative DNA helic 94.5 0.15 3.2E-06 46.3 7.3 49 156-209 63-111 (237)
304 cd01983 Fer4_NifH The Fer4_Nif 94.5 0.034 7.5E-07 42.1 2.9 23 159-181 1-23 (99)
305 KOG0744 AAA+-type ATPase [Post 94.4 0.03 6.6E-07 52.1 2.9 72 157-241 177-250 (423)
306 KOG0734 AAA+-type ATPase conta 94.4 0.056 1.2E-06 53.6 4.9 45 137-181 305-361 (752)
307 TIGR00017 cmk cytidylate kinas 94.4 0.036 7.9E-07 49.6 3.4 24 158-181 3-26 (217)
308 cd03238 ABC_UvrA The excision 94.4 0.035 7.5E-07 48.0 3.1 24 156-179 20-43 (176)
309 cd03222 ABC_RNaseL_inhibitor T 94.4 0.035 7.6E-07 48.0 3.1 26 156-181 24-49 (177)
310 COG1120 FepC ABC-type cobalami 94.4 0.034 7.4E-07 50.8 3.1 36 156-195 27-62 (258)
311 PRK14948 DNA polymerase III su 94.4 0.059 1.3E-06 56.0 5.2 46 136-181 16-62 (620)
312 PRK13231 nitrogenase reductase 94.4 0.034 7.4E-07 51.4 3.2 36 158-197 3-38 (264)
313 cd01862 Rab7 Rab7 subfamily. 94.4 0.033 7.1E-07 47.4 2.9 22 159-180 2-23 (172)
314 TIGR02673 FtsE cell division A 94.4 0.035 7.6E-07 49.5 3.2 35 156-194 27-61 (214)
315 PRK14953 DNA polymerase III su 94.4 0.064 1.4E-06 54.1 5.3 46 136-181 16-62 (486)
316 PF02374 ArsA_ATPase: Anion-tr 94.4 0.051 1.1E-06 51.4 4.4 47 158-207 2-48 (305)
317 cd03263 ABC_subfamily_A The AB 94.4 0.035 7.6E-07 49.7 3.2 35 156-194 27-61 (220)
318 cd03261 ABC_Org_Solvent_Resist 94.4 0.035 7.5E-07 50.4 3.2 26 156-181 25-50 (235)
319 PRK02496 adk adenylate kinase; 94.4 0.04 8.6E-07 47.9 3.4 23 159-181 3-25 (184)
320 PRK10416 signal recognition pa 94.4 0.04 8.7E-07 52.3 3.7 26 156-181 113-138 (318)
321 PRK00698 tmk thymidylate kinas 94.4 0.039 8.5E-07 48.7 3.4 24 158-181 4-27 (205)
322 PF00406 ADK: Adenylate kinase 94.4 0.031 6.7E-07 46.9 2.6 20 162-181 1-20 (151)
323 COG0703 AroK Shikimate kinase 94.4 0.043 9.3E-07 46.8 3.4 28 158-188 3-30 (172)
324 TIGR01351 adk adenylate kinase 94.4 0.036 7.8E-07 49.4 3.2 22 160-181 2-23 (210)
325 PRK12724 flagellar biosynthesi 94.4 0.073 1.6E-06 52.1 5.4 24 157-180 223-246 (432)
326 TIGR02315 ABC_phnC phosphonate 94.4 0.035 7.6E-07 50.6 3.2 35 156-194 27-61 (243)
327 PRK13768 GTPase; Provisional 94.4 0.039 8.4E-07 50.7 3.5 24 158-181 3-26 (253)
328 cd03115 SRP The signal recogni 94.3 0.04 8.6E-07 47.4 3.3 23 159-181 2-24 (173)
329 cd01130 VirB11-like_ATPase Typ 94.3 0.072 1.6E-06 46.5 4.9 37 144-181 13-49 (186)
330 cd03293 ABC_NrtD_SsuB_transpor 94.3 0.036 7.9E-07 49.7 3.2 35 156-194 29-63 (220)
331 TIGR01243 CDC48 AAA family ATP 94.3 0.052 1.1E-06 57.9 4.8 46 136-181 178-236 (733)
332 TIGR01281 DPOR_bchL light-inde 94.3 0.036 7.8E-07 51.3 3.2 23 159-181 2-24 (268)
333 cd03259 ABC_Carb_Solutes_like 94.3 0.037 8E-07 49.3 3.2 25 156-180 25-49 (213)
334 PTZ00035 Rad51 protein; Provis 94.3 0.25 5.5E-06 47.4 9.0 57 156-214 117-177 (337)
335 PRK04328 hypothetical protein; 94.3 0.12 2.5E-06 47.5 6.5 53 156-214 22-74 (249)
336 cd03256 ABC_PhnC_transporter A 94.3 0.037 7.9E-07 50.4 3.2 26 156-181 26-51 (241)
337 COG0542 clpA ATP-binding subun 94.3 0.053 1.1E-06 56.9 4.6 44 136-179 170-213 (786)
338 PLN03187 meiotic recombination 94.3 0.14 3E-06 49.1 7.1 59 156-216 125-187 (344)
339 PRK05342 clpX ATP-dependent pr 94.3 0.056 1.2E-06 53.2 4.6 46 136-181 71-132 (412)
340 cd03297 ABC_ModC_molybdenum_tr 94.3 0.04 8.7E-07 49.2 3.3 34 156-194 23-56 (214)
341 TIGR02238 recomb_DMC1 meiotic 94.3 0.15 3.3E-06 48.4 7.3 58 156-215 95-156 (313)
342 cd03230 ABC_DR_subfamily_A Thi 94.3 0.067 1.5E-06 46.0 4.6 35 156-194 25-59 (173)
343 cd03264 ABC_drug_resistance_li 94.3 0.035 7.5E-07 49.4 2.9 33 159-195 27-59 (211)
344 KOG0731 AAA+-type ATPase conta 94.3 0.052 1.1E-06 56.6 4.4 46 136-181 311-368 (774)
345 TIGR02016 BchX chlorophyllide 94.3 0.038 8.3E-07 52.0 3.3 24 158-181 1-24 (296)
346 smart00173 RAS Ras subfamily o 94.3 0.039 8.4E-07 46.6 3.1 22 159-180 2-23 (164)
347 cd03235 ABC_Metallic_Cations A 94.3 0.036 7.7E-07 49.5 2.9 26 156-181 24-49 (213)
348 cd04163 Era Era subfamily. Er 94.3 0.041 9E-07 46.1 3.2 24 157-180 3-26 (168)
349 PRK13541 cytochrome c biogenes 94.3 0.04 8.6E-07 48.5 3.2 26 156-181 25-50 (195)
350 cd03292 ABC_FtsE_transporter F 94.3 0.039 8.4E-07 49.2 3.2 35 156-194 26-60 (214)
351 PRK14528 adenylate kinase; Pro 94.3 0.042 9.2E-07 47.9 3.3 24 158-181 2-25 (186)
352 cd03260 ABC_PstB_phosphate_tra 94.3 0.039 8.4E-07 49.7 3.2 25 156-180 25-49 (227)
353 PRK07764 DNA polymerase III su 94.2 0.057 1.2E-06 57.8 4.9 46 136-181 15-61 (824)
354 cd02032 Bchl_like This family 94.2 0.039 8.4E-07 51.1 3.3 23 159-181 2-24 (267)
355 COG3638 ABC-type phosphate/pho 94.2 0.13 2.7E-06 46.1 6.2 24 156-179 29-52 (258)
356 PLN03186 DNA repair protein RA 94.2 0.12 2.7E-06 49.5 6.7 58 156-215 122-183 (342)
357 TIGR00455 apsK adenylylsulfate 94.2 0.048 1.1E-06 47.4 3.7 27 155-181 16-42 (184)
358 TIGR02012 tigrfam_recA protein 94.2 0.062 1.4E-06 50.9 4.6 44 156-202 54-97 (321)
359 PF06068 TIP49: TIP49 C-termin 94.2 0.094 2E-06 50.1 5.7 73 136-212 24-105 (398)
360 PRK00279 adk adenylate kinase; 94.2 0.042 9E-07 49.2 3.3 23 159-181 2-24 (215)
361 TIGR02640 gas_vesic_GvpN gas v 94.2 0.057 1.2E-06 49.9 4.3 55 144-206 10-64 (262)
362 TIGR03864 PQQ_ABC_ATP ABC tran 94.2 0.039 8.5E-07 50.1 3.2 35 156-194 26-60 (236)
363 PLN00020 ribulose bisphosphate 94.2 0.048 1E-06 52.2 3.7 26 156-181 147-172 (413)
364 PRK10584 putative ABC transpor 94.2 0.041 8.9E-07 49.6 3.2 35 156-194 35-69 (228)
365 cd03226 ABC_cobalt_CbiO_domain 94.2 0.041 8.8E-07 48.8 3.1 35 156-194 25-59 (205)
366 PRK13540 cytochrome c biogenes 94.2 0.07 1.5E-06 47.1 4.6 36 156-195 26-61 (200)
367 cd04119 RJL RJL (RabJ-Like) su 94.2 0.04 8.7E-07 46.5 3.0 21 160-180 3-23 (168)
368 COG4608 AppF ABC-type oligopep 94.2 0.039 8.5E-07 50.3 3.0 26 156-181 38-63 (268)
369 KOG0989 Replication factor C, 94.2 0.088 1.9E-06 48.8 5.2 56 136-192 36-91 (346)
370 cd03114 ArgK-like The function 94.2 0.04 8.6E-07 46.2 2.9 23 159-181 1-23 (148)
371 PRK09183 transposase/IS protei 94.1 0.041 8.9E-07 50.7 3.2 25 157-181 102-126 (259)
372 KOG0738 AAA+-type ATPase [Post 94.1 0.063 1.4E-06 51.2 4.4 26 156-181 244-269 (491)
373 cd03296 ABC_CysA_sulfate_impor 94.1 0.041 8.9E-07 50.0 3.2 26 156-181 27-52 (239)
374 PF03215 Rad17: Rad17 cell cyc 94.1 0.076 1.6E-06 53.8 5.3 54 136-194 19-77 (519)
375 COG4778 PhnL ABC-type phosphon 94.1 0.071 1.5E-06 45.2 4.2 34 158-195 38-71 (235)
376 PF00308 Bac_DnaA: Bacterial d 94.1 0.11 2.4E-06 46.6 5.9 47 135-181 8-58 (219)
377 cd04155 Arl3 Arl3 subfamily. 94.1 0.068 1.5E-06 45.6 4.4 25 156-180 13-37 (173)
378 cd03224 ABC_TM1139_LivF_branch 94.1 0.043 9.3E-07 49.2 3.2 35 156-194 25-59 (222)
379 PRK15177 Vi polysaccharide exp 94.1 0.041 8.9E-07 49.2 3.0 26 156-181 12-37 (213)
380 TIGR02211 LolD_lipo_ex lipopro 94.1 0.043 9.3E-07 49.2 3.2 35 156-194 30-64 (221)
381 PRK07133 DNA polymerase III su 94.1 0.072 1.6E-06 55.7 5.1 46 136-181 18-64 (725)
382 PRK08116 hypothetical protein; 94.1 0.046 9.9E-07 50.7 3.4 47 158-213 115-161 (268)
383 cd01129 PulE-GspE PulE/GspE Th 94.1 0.083 1.8E-06 48.9 5.1 42 139-180 62-103 (264)
384 COG0541 Ffh Signal recognition 94.1 5 0.00011 39.4 17.0 57 156-216 99-157 (451)
385 TIGR03878 thermo_KaiC_2 KaiC d 94.0 0.098 2.1E-06 48.3 5.5 40 156-198 35-74 (259)
386 PRK13185 chlL protochlorophyll 94.0 0.048 1E-06 50.6 3.4 24 158-181 3-26 (270)
387 KOG2035 Replication factor C, 94.0 0.74 1.6E-05 42.2 10.7 43 137-179 14-56 (351)
388 PF06745 KaiC: KaiC; InterPro 94.0 0.084 1.8E-06 47.5 4.9 48 156-208 18-66 (226)
389 cd04159 Arl10_like Arl10-like 94.0 0.041 8.8E-07 45.8 2.7 21 160-180 2-22 (159)
390 cd03258 ABC_MetN_methionine_tr 94.0 0.046 9.9E-07 49.5 3.2 26 156-181 30-55 (233)
391 cd04113 Rab4 Rab4 subfamily. 94.0 0.046 1E-06 46.0 3.0 21 160-180 3-23 (161)
392 PRK14730 coaE dephospho-CoA ki 94.0 0.051 1.1E-06 47.8 3.3 23 158-180 2-24 (195)
393 cd00983 recA RecA is a bacter 94.0 0.07 1.5E-06 50.6 4.4 44 156-202 54-97 (325)
394 PRK11629 lolD lipoprotein tran 94.0 0.047 1E-06 49.5 3.2 35 156-194 34-68 (233)
395 cd03257 ABC_NikE_OppD_transpor 94.0 0.046 1E-06 49.2 3.1 26 156-181 30-55 (228)
396 TIGR01184 ntrCD nitrate transp 94.0 0.048 1E-06 49.4 3.2 25 157-181 11-35 (230)
397 smart00175 RAB Rab subfamily o 94.0 0.046 9.9E-07 46.0 2.9 22 160-181 3-24 (164)
398 cd03237 ABC_RNaseL_inhibitor_d 94.0 0.047 1E-06 50.0 3.2 25 157-181 25-49 (246)
399 PRK11248 tauB taurine transpor 94.0 0.047 1E-06 50.3 3.2 26 156-181 26-51 (255)
400 PRK13538 cytochrome c biogenes 94.0 0.048 1E-06 48.3 3.2 26 156-181 26-51 (204)
401 cd04138 H_N_K_Ras_like H-Ras/N 94.0 0.049 1.1E-06 45.7 3.1 22 159-180 3-24 (162)
402 PF00142 Fer4_NifH: 4Fe-4S iro 93.9 0.052 1.1E-06 49.4 3.3 24 158-181 1-24 (273)
403 cd03301 ABC_MalK_N The N-termi 93.9 0.049 1.1E-06 48.5 3.2 35 156-194 25-59 (213)
404 TIGR00231 small_GTP small GTP- 93.9 0.046 1E-06 45.2 2.9 23 159-181 3-25 (161)
405 TIGR03608 L_ocin_972_ABC putat 93.9 0.049 1.1E-06 48.2 3.2 34 157-194 24-57 (206)
406 PRK08533 flagellar accessory p 93.9 0.16 3.5E-06 45.9 6.6 53 156-214 23-75 (230)
407 COG4088 Predicted nucleotide k 93.9 0.046 1E-06 47.7 2.8 24 158-181 2-25 (261)
408 cd01673 dNK Deoxyribonucleosid 93.9 0.045 9.7E-07 47.9 2.9 23 159-181 1-23 (193)
409 PF12780 AAA_8: P-loop contain 93.9 0.93 2E-05 42.0 11.6 35 145-180 20-54 (268)
410 PRK10247 putative ABC transpor 93.9 0.049 1.1E-06 49.0 3.2 35 156-194 32-66 (225)
411 PRK06526 transposase; Provisio 93.9 0.045 9.8E-07 50.3 3.0 26 156-181 97-122 (254)
412 cd00876 Ras Ras family. The R 93.9 0.049 1.1E-06 45.5 3.0 21 160-180 2-22 (160)
413 cd03232 ABC_PDR_domain2 The pl 93.9 0.051 1.1E-06 47.7 3.2 25 156-180 32-56 (192)
414 PRK06647 DNA polymerase III su 93.9 0.089 1.9E-06 54.0 5.3 46 136-181 16-62 (563)
415 PRK07952 DNA replication prote 93.9 0.1 2.2E-06 47.6 5.2 36 157-195 99-134 (244)
416 PRK11608 pspF phage shock prot 93.9 0.098 2.1E-06 50.0 5.3 46 136-181 6-53 (326)
417 KOG0733 Nuclear AAA ATPase (VC 93.9 0.077 1.7E-06 53.5 4.6 46 136-181 190-247 (802)
418 PLN03046 D-glycerate 3-kinase; 93.9 0.058 1.3E-06 52.6 3.7 26 156-181 211-236 (460)
419 TIGR00959 ffh signal recogniti 93.9 0.24 5.3E-06 48.9 8.1 26 156-181 98-123 (428)
420 cd03219 ABC_Mj1267_LivG_branch 93.9 0.047 1E-06 49.5 3.0 35 156-194 25-59 (236)
421 PRK07429 phosphoribulokinase; 93.9 0.057 1.2E-06 51.5 3.6 26 156-181 7-32 (327)
422 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.9 0.053 1.1E-06 45.2 3.0 26 156-181 25-50 (144)
423 PF07693 KAP_NTPase: KAP famil 93.8 0.3 6.4E-06 46.5 8.6 73 142-215 2-82 (325)
424 PRK12338 hypothetical protein; 93.8 0.06 1.3E-06 50.8 3.6 25 157-181 4-28 (319)
425 TIGR00678 holB DNA polymerase 93.8 0.34 7.3E-06 42.2 8.2 35 147-181 3-38 (188)
426 cd03246 ABCC_Protease_Secretio 93.8 0.056 1.2E-06 46.5 3.2 26 156-181 27-52 (173)
427 PRK11124 artP arginine transpo 93.8 0.052 1.1E-06 49.5 3.2 36 156-195 27-62 (242)
428 cd00154 Rab Rab family. Rab G 93.8 0.053 1.1E-06 45.0 3.0 22 160-181 3-24 (159)
429 COG0529 CysC Adenylylsulfate k 93.8 0.11 2.4E-06 44.3 4.8 29 153-181 19-47 (197)
430 PRK14965 DNA polymerase III su 93.8 0.095 2.1E-06 54.1 5.4 46 136-181 16-62 (576)
431 PRK08154 anaerobic benzoate ca 93.8 0.098 2.1E-06 49.6 5.1 26 156-181 132-157 (309)
432 PRK10908 cell division protein 93.8 0.054 1.2E-06 48.6 3.2 35 156-194 27-61 (222)
433 cd04124 RabL2 RabL2 subfamily. 93.8 0.054 1.2E-06 45.8 3.0 21 160-180 3-23 (161)
434 cd02034 CooC The accessory pro 93.8 0.061 1.3E-06 43.0 3.1 22 160-181 2-23 (116)
435 COG1123 ATPase components of v 93.8 0.049 1.1E-06 54.7 3.1 26 156-181 316-341 (539)
436 cd03223 ABCD_peroxisomal_ALDP 93.8 0.057 1.2E-06 46.2 3.1 26 156-181 26-51 (166)
437 cd03218 ABC_YhbG The ABC trans 93.8 0.054 1.2E-06 48.9 3.2 35 156-194 25-59 (232)
438 TIGR01189 ccmA heme ABC export 93.8 0.056 1.2E-06 47.6 3.2 35 156-194 25-59 (198)
439 COG0714 MoxR-like ATPases [Gen 93.7 0.2 4.3E-06 48.0 7.2 65 137-209 25-89 (329)
440 cd01864 Rab19 Rab19 subfamily. 93.7 0.054 1.2E-06 45.9 3.0 22 158-179 4-25 (165)
441 cd03268 ABC_BcrA_bacitracin_re 93.7 0.056 1.2E-06 48.0 3.2 36 156-195 25-60 (208)
442 cd03278 ABC_SMC_barmotin Barmo 93.7 0.053 1.1E-06 47.8 3.0 21 159-179 24-44 (197)
443 TIGR01978 sufC FeS assembly AT 93.7 0.053 1.2E-06 49.4 3.1 37 156-194 25-61 (243)
444 TIGR02770 nickel_nikD nickel i 93.7 0.054 1.2E-06 49.0 3.1 26 156-181 11-36 (230)
445 PRK04220 2-phosphoglycerate ki 93.7 0.098 2.1E-06 48.9 4.8 26 156-181 91-116 (301)
446 PRK09354 recA recombinase A; P 93.7 0.15 3.3E-06 48.8 6.2 44 156-202 59-102 (349)
447 TIGR00101 ureG urease accessor 93.7 0.066 1.4E-06 47.3 3.5 24 158-181 2-25 (199)
448 PRK13539 cytochrome c biogenes 93.7 0.057 1.2E-06 48.0 3.2 35 156-194 27-61 (207)
449 cd03262 ABC_HisP_GlnQ_permease 93.7 0.056 1.2E-06 48.1 3.2 35 156-194 25-59 (213)
450 cd03266 ABC_NatA_sodium_export 93.7 0.056 1.2E-06 48.3 3.2 36 156-195 30-65 (218)
451 PRK11022 dppD dipeptide transp 93.7 0.052 1.1E-06 51.9 3.1 26 156-181 32-57 (326)
452 cd03247 ABCC_cytochrome_bd The 93.7 0.059 1.3E-06 46.6 3.2 26 156-181 27-52 (178)
453 PRK05563 DNA polymerase III su 93.7 0.11 2.3E-06 53.6 5.4 46 136-181 16-62 (559)
454 cd03295 ABC_OpuCA_Osmoprotecti 93.7 0.057 1.2E-06 49.2 3.2 35 156-194 26-60 (242)
455 PF13555 AAA_29: P-loop contai 93.7 0.076 1.6E-06 37.1 3.1 20 159-178 25-44 (62)
456 PRK14974 cell division protein 93.7 0.064 1.4E-06 51.3 3.6 56 156-215 139-196 (336)
457 PRK14250 phosphate ABC transpo 93.7 0.056 1.2E-06 49.2 3.2 35 156-194 28-62 (241)
458 cd03214 ABC_Iron-Siderophores_ 93.7 0.06 1.3E-06 46.7 3.2 35 156-194 24-58 (180)
459 PF00071 Ras: Ras family; Int 93.7 0.061 1.3E-06 45.3 3.2 21 160-180 2-22 (162)
460 TIGR02324 CP_lyasePhnL phospho 93.7 0.057 1.2E-06 48.5 3.2 36 156-195 33-68 (224)
461 PRK14247 phosphate ABC transpo 93.7 0.056 1.2E-06 49.5 3.2 26 156-181 28-53 (250)
462 PHA02575 1 deoxynucleoside mon 93.7 0.057 1.2E-06 48.1 3.0 21 159-179 2-22 (227)
463 TIGR02528 EutP ethanolamine ut 93.6 0.052 1.1E-06 44.7 2.7 22 159-180 2-23 (142)
464 TIGR01277 thiQ thiamine ABC tr 93.6 0.059 1.3E-06 48.1 3.2 35 156-194 23-57 (213)
465 cd04136 Rap_like Rap-like subf 93.6 0.058 1.3E-06 45.4 3.0 21 159-179 3-23 (163)
466 cd03216 ABC_Carb_Monos_I This 93.6 0.063 1.4E-06 45.7 3.2 35 156-194 25-59 (163)
467 PRK14242 phosphate transporter 93.6 0.059 1.3E-06 49.5 3.2 25 156-180 31-55 (253)
468 PRK11247 ssuB aliphatic sulfon 93.6 0.059 1.3E-06 49.7 3.2 26 156-181 37-62 (257)
469 PRK14959 DNA polymerase III su 93.6 0.1 2.2E-06 53.7 5.2 46 136-181 16-62 (624)
470 PRK13648 cbiO cobalt transport 93.6 0.095 2.1E-06 48.6 4.6 36 156-195 34-69 (269)
471 PRK10865 protein disaggregatio 93.6 0.11 2.3E-06 56.3 5.6 46 136-181 568-622 (857)
472 PRK14245 phosphate ABC transpo 93.6 0.059 1.3E-06 49.4 3.2 24 156-179 28-51 (250)
473 PRK14971 DNA polymerase III su 93.6 0.28 6.1E-06 51.0 8.4 46 136-181 17-63 (614)
474 cd03252 ABCC_Hemolysin The ABC 93.6 0.059 1.3E-06 48.9 3.2 35 156-194 27-61 (237)
475 COG1484 DnaC DNA replication p 93.6 0.1 2.2E-06 48.0 4.7 38 156-196 104-141 (254)
476 COG1121 ZnuC ABC-type Mn/Zn tr 93.6 0.062 1.3E-06 48.9 3.1 23 157-179 30-52 (254)
477 TIGR00382 clpX endopeptidase C 93.6 0.13 2.8E-06 50.5 5.6 47 135-181 76-140 (413)
478 PRK14241 phosphate transporter 93.6 0.061 1.3E-06 49.6 3.2 26 156-181 29-54 (258)
479 PRK09544 znuC high-affinity zi 93.6 0.061 1.3E-06 49.4 3.2 26 156-181 29-54 (251)
480 cd03273 ABC_SMC2_euk Eukaryoti 93.5 0.066 1.4E-06 49.1 3.4 25 156-180 24-48 (251)
481 TIGR00972 3a0107s01c2 phosphat 93.5 0.062 1.3E-06 49.2 3.2 38 156-194 26-65 (247)
482 cd00879 Sar1 Sar1 subfamily. 93.5 0.059 1.3E-06 46.9 2.9 24 157-180 19-42 (190)
483 COG4136 ABC-type uncharacteriz 93.5 0.13 2.8E-06 42.7 4.6 37 156-195 27-65 (213)
484 cd03254 ABCC_Glucan_exporter_l 93.5 0.094 2E-06 47.3 4.3 36 156-195 28-63 (229)
485 PRK06851 hypothetical protein; 93.5 0.83 1.8E-05 44.2 10.9 56 138-199 199-254 (367)
486 cd03215 ABC_Carb_Monos_II This 93.5 0.064 1.4E-06 46.6 3.1 35 156-194 25-59 (182)
487 cd03233 ABC_PDR_domain1 The pl 93.5 0.061 1.3E-06 47.6 3.0 39 156-195 32-70 (202)
488 PRK10867 signal recognition pa 93.5 0.29 6.3E-06 48.5 7.9 26 156-181 99-124 (433)
489 PRK11264 putative amino-acid A 93.5 0.064 1.4E-06 49.1 3.2 26 156-181 28-53 (250)
490 PRK14274 phosphate ABC transpo 93.5 0.064 1.4E-06 49.4 3.2 25 156-180 37-61 (259)
491 cd03228 ABCC_MRP_Like The MRP 93.5 0.067 1.5E-06 45.9 3.1 26 156-181 27-52 (171)
492 cd03267 ABC_NatA_like Similar 93.5 0.065 1.4E-06 48.7 3.2 35 156-194 46-80 (236)
493 TIGR03740 galliderm_ABC gallid 93.5 0.11 2.4E-06 46.6 4.7 35 156-194 25-59 (223)
494 COG4619 ABC-type uncharacteriz 93.5 0.066 1.4E-06 45.3 2.9 22 158-179 30-51 (223)
495 TIGR03410 urea_trans_UrtE urea 93.5 0.063 1.4E-06 48.4 3.1 35 156-194 25-59 (230)
496 PRK10744 pstB phosphate transp 93.5 0.064 1.4E-06 49.5 3.2 25 156-180 38-62 (260)
497 PF07724 AAA_2: AAA domain (Cd 93.5 0.087 1.9E-06 45.3 3.7 40 157-198 3-42 (171)
498 PRK00023 cmk cytidylate kinase 93.5 0.074 1.6E-06 48.0 3.5 24 158-181 5-28 (225)
499 cd04123 Rab21 Rab21 subfamily. 93.5 0.066 1.4E-06 44.8 3.0 22 160-181 3-24 (162)
500 TIGR02974 phageshock_pspF psp 93.5 0.12 2.7E-06 49.4 5.2 44 138-181 1-46 (329)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-53 Score=444.51 Aligned_cols=387 Identities=40% Similarity=0.697 Sum_probs=326.3
Q ss_pred cccchhhhhhhHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHH
Q 043778 8 SCDSNITRCPDCTVRKASSIRDLQKNLEALPRELQKLVETRNDVRIRVIVAEQQKMKRLEQVEPWFSRVQDAESEVAKLM 87 (405)
Q Consensus 8 ~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~ayd~eD~l 87 (405)
.++..++++.+++.++...+.+.++++..|+++|..|+.++.| ++.++.+ ...+..|...++++.|+++|.+
T Consensus 4 ~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~ 75 (889)
T KOG4658|consen 4 CVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRDD-LERRVNWEEDVGDLVYLAEDII 75 (889)
T ss_pred EEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999999999999999999 5555544 4778899999999999999999
Q ss_pred HHHHHHhhh----------------hhcCCcCCCCccchhhh----------------ccccccccc-cCCCCCCcCCCC
Q 043778 88 LERNWELKK----------------LCLGGCCSKSCKSSYKV----------------EGDFQEVAQ-RLPENPVDARPV 134 (405)
Q Consensus 88 d~~~~~~~~----------------~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~~~~~~ 134 (405)
+.+...... .|+.+.|..+....+.+ ++.++.+.. ..+......+|.
T Consensus 76 ~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~ 155 (889)
T KOG4658|consen 76 WLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPI 155 (889)
T ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCC
Confidence 998765421 23334444444433332 333444443 122222333443
Q ss_pred cccc-ccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccC-CCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 043778 135 ALTI-VGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLD-EPNYFDVVIWAVASKVVEIEKIQESIAKK 212 (405)
Q Consensus 135 ~~~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 212 (405)
.+.. ||.+..++++.+.|.+++..+++|+||||+||||||+.++|+. . ++.+|+.++||+||+.|+...++.+|+..
T Consensus 156 ~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~-~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 156 QSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKF-DEVGNHFDGVIWVVVSKEFTTRKIQQTILER 234 (889)
T ss_pred CccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhccc-chhcccCceEEEEEEcccccHHhHHHHHHHH
Confidence 3333 9999999999999999888999999999999999999999999 6 99999999999999999999999999999
Q ss_pred hCCCCCCCCcccHHHHHHHHHHHHcccch---------------------------------------------------
Q 043778 213 IGFFNESWESKTVQEKAVDIFNILSKKKY--------------------------------------------------- 241 (405)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~l~~~L~~kr~--------------------------------------------------- 241 (405)
++..+..+......+.+..|.+.|+.|||
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 98766656666678999999999999999
Q ss_pred -----HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh-----------hhhCCCCHHHHHHHHHHHhhh---------
Q 043778 242 -----EDAWKLFEEKVGRDILDSHPNIPELVETVAKECG-----------AMASRKTHQEWEYAIEVWRNE--------- 296 (405)
Q Consensus 242 -----~ds~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~C~-----------~l~~~~~~~~W~~~l~~l~~~--------- 296 (405)
+|||.||++.+|.....+++.+.++|++|+++|+ +|+.+.+.++|+++.+.+.+.
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 9999999999998866777779999999999998 678999999999999988665
Q ss_pred --c--cHhhhhccCCCCccccccc----------eeHHHHHHHHHHhCCCCCCC-chhHHHHHHHHHHHHHHcCccccc-
Q 043778 297 --Y--TLVYSYDFLPSDVGRFCLL----------IDIDQLVDFWICEGFLDEYD-GIAARNQGYCIVGTLLHACLLEEE- 360 (405)
Q Consensus 297 --~--~l~~sy~~Lp~~~~k~cfl----------i~~~~Li~~Wiaeg~~~~~~-~~~~e~~a~~~~~~Lv~r~ll~~~- 360 (405)
+ +|++||++||+ ++|+||+ |+++.|+.+|+||||+.... +..+++.|++|+++|+++||++.+
T Consensus 395 ~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 1 99999999996 7999999 99999999999999999955 448999999999999999999985
Q ss_pred ---CCCeEEeChhHHHHHHHHHcccccccccEEEecCCCCccCCCCC
Q 043778 361 ---EGNRVKMHDVIRDMALWIASTFENKNEKFLVLAGVGLTAAPSVG 404 (405)
Q Consensus 361 ---~~~~~~~Hdlvrd~a~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 404 (405)
+..+|+|||+||++|.++|++.|.+++.+++.+|.+..+.|.++
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~ 520 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVK 520 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcccccccc
Confidence 34799999999999999999999888889999988888888753
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.94 E-value=2.2e-27 Score=223.12 Aligned_cols=194 Identities=32% Similarity=0.579 Sum_probs=160.2
Q ss_pred chHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 043778 141 LESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIGFFNE 218 (405)
Q Consensus 141 r~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~ 218 (405)
||.++++|.+.|.. ++.++|+|+||||+||||||..++++. .++.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 68899999999988 689999999999999999999999986 578999999999999999999999999999987644
Q ss_pred CC-CcccHHHHHHHHHHHHcccch--------------------------------------------------------
Q 043778 219 SW-ESKTVQEKAVDIFNILSKKKY-------------------------------------------------------- 241 (405)
Q Consensus 219 ~~-~~~~~~~~~~~l~~~L~~kr~-------------------------------------------------------- 241 (405)
.. ...+.......+++.|.++++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 456778899999999999988
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh-----------hhhCCCCHHHHHHHHHHHhhh----------c--c
Q 043778 242 EDAWKLFEEKVGRDILDSHPNIPELVETVAKECG-----------AMASRKTHQEWEYAIEVWRNE----------Y--T 298 (405)
Q Consensus 242 ~ds~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~C~-----------~l~~~~~~~~W~~~l~~l~~~----------~--~ 298 (405)
+||++||.+.++.......+.+.+.+++|+++|+ .|+.+.+..+|..+++.+... + +
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999976652334556688999999999 232334678999998877654 1 8
Q ss_pred HhhhhccCCCCccccccc----------eeHHHHHHHHHHhCCCCCCC
Q 043778 299 LVYSYDFLPSDVGRFCLL----------IDIDQLVDFWICEGFLDEYD 336 (405)
Q Consensus 299 l~~sy~~Lp~~~~k~cfl----------i~~~~Li~~Wiaeg~~~~~~ 336 (405)
+.+||+.||+ ++|+||+ |+++.|+++|++|||++.++
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 9999999999 6999998 99999999999999998753
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1.2e-25 Score=246.38 Aligned_cols=238 Identities=21% Similarity=0.258 Sum_probs=170.5
Q ss_pred cccccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEe---CCC-----------
Q 043778 136 LTIVGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVA---SKV----------- 199 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~v---s~~----------- 199 (405)
+.+||++..++++..+|.- ++.++|+||||||+||||||+.+|+ ++..+|++.+|+.- +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~---~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS---RLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH---HHhhcCCeEEEeeccccccchhhcccccccc
Confidence 5689999999999988853 4789999999999999999999999 44789999888741 211
Q ss_pred CC-HHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHcccch-------------------------------------
Q 043778 200 VE-IEKIQESIAKKIGFFNESWESKTVQEKAVDIFNILSKKKY------------------------------------- 241 (405)
Q Consensus 200 ~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~------------------------------------- 241 (405)
++ ...++..++..+..... ...... ..+++.|.++|+
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~~----~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYHL----GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCCH----HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 11 12344455444421110 000000 223344444443
Q ss_pred ------------------HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh----------hhhCCCCHHHHHHHHHHH
Q 043778 242 ------------------EDAWKLFEEKVGRDILDSHPNIPELVETVAKECG----------AMASRKTHQEWEYAIEVW 293 (405)
Q Consensus 242 ------------------~ds~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~C~----------~l~~~~~~~~W~~~l~~l 293 (405)
++||+||+..||... ..+.++.+++++|+++|+ .....++..+|..++++|
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 899999999998765 345568899999999999 223457899999999999
Q ss_pred hhh----c--cHhhhhccCCCCccccccc----e---eHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHcCccccc
Q 043778 294 RNE----Y--TLVYSYDFLPSDVGRFCLL----I---DIDQLVDFWICEGFLDEYDGIAARNQGYCIVGTLLHACLLEEE 360 (405)
Q Consensus 294 ~~~----~--~l~~sy~~Lp~~~~k~cfl----i---~~~~Li~~Wiaeg~~~~~~~~~~e~~a~~~~~~Lv~r~ll~~~ 360 (405)
... + +|++||++||++..|.||+ + .....+..|++++.... +..++.|+++||++..
T Consensus 415 ~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~ 484 (1153)
T PLN03210 415 RNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDV----------NIGLKNLVDKSLIHVR 484 (1153)
T ss_pred HhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCc----------hhChHHHHhcCCEEEc
Confidence 875 3 9999999998744899999 1 12345778888765543 1238899999999875
Q ss_pred CCCeEEeChhHHHHHHHHHcccc--cccccEEEec
Q 043778 361 EGNRVKMHDVIRDMALWIASTFE--NKNEKFLVLA 393 (405)
Q Consensus 361 ~~~~~~~Hdlvrd~a~~~~~~~~--~~~~~~~~~~ 393 (405)
.+.++|||++|+||+.++.++. +.+..+++.+
T Consensus 485 -~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~ 518 (1153)
T PLN03210 485 -EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA 518 (1153)
T ss_pred -CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH
Confidence 4679999999999999997753 2344555543
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.40 E-value=2.4e-06 Score=84.08 Aligned_cols=104 Identities=16% Similarity=0.075 Sum_probs=73.1
Q ss_pred ccccccchHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 043778 135 ALTIVGLESIFDKLWRCLTE----EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIA 210 (405)
Q Consensus 135 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 210 (405)
++.++||++++++|...|.. .....+.|+|++|+|||++++.++++. ......-..+++......+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 46789999999999988743 245567899999999999999999876 3222223456666666667888999999
Q ss_pred HHhCCCCCCCCcccHHHHHHHHHHHHccc
Q 043778 211 KKIGFFNESWESKTVQEKAVDIFNILSKK 239 (405)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 239 (405)
.++.....+....+..+....+.+.+..+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDER 136 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 99865221112234556666677776543
No 5
>PTZ00202 tuzin; Provisional
Probab=98.27 E-value=1.1e-05 Score=77.95 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=57.7
Q ss_pred ccccccchHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043778 135 ALTIVGLESIFDKLWRCLTEE---QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAK 211 (405)
Q Consensus 135 ~~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 211 (405)
...|+||+.+...|...|.+. ..+++.|.|++|+|||||++.+.... . + ..+++... +..+++..|+.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~-~qL~vNpr---g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M-PAVFVDVR---GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c-eEEEECCC---CHHHHHHHHHH
Confidence 477999999999999888642 35699999999999999999999844 2 2 23333322 67999999999
Q ss_pred HhCCC
Q 043778 212 KIGFF 216 (405)
Q Consensus 212 ~l~~~ 216 (405)
+||.+
T Consensus 332 ALGV~ 336 (550)
T PTZ00202 332 ALGVP 336 (550)
T ss_pred HcCCC
Confidence 99974
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.11 E-value=2.6e-05 Score=75.86 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=59.5
Q ss_pred cccccchHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---CEEEEEEeCCCCCHHHHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTE----EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF---DVVIWAVASKVVEIEKIQES 208 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F---~~~~wv~vs~~~~~~~l~~~ 208 (405)
+.++||+.++++|...|.. .....+.|+|++|+|||++++.++++..+..... -..+|+......+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999998863 3456799999999999999999998641111111 14566766666677888999
Q ss_pred HHHHhC
Q 043778 209 IAKKIG 214 (405)
Q Consensus 209 i~~~l~ 214 (405)
|+.++.
T Consensus 95 i~~~l~ 100 (365)
T TIGR02928 95 LANQLR 100 (365)
T ss_pred HHHHHh
Confidence 999883
No 7
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.10 E-value=7e-06 Score=74.93 Aligned_cols=55 Identities=22% Similarity=0.152 Sum_probs=46.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCC--CCHHHHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKV--VEIEKIQESIAKK 212 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~i~~~ 212 (405)
.-..++|+|++|+|||||++.++++. ... +|+.++|+.++.. ++..++++.+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~ 71 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TKN-HPEVYLIVLLIDERPEEVTDMQRSVKGE 71 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-ccc-cCCeEEEEEEccCCCccHHHHHHHhccE
Confidence 45689999999999999999999976 433 8999999997776 7899999999433
No 8
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.08 E-value=4.8e-06 Score=79.65 Aligned_cols=54 Identities=22% Similarity=0.145 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCC--CHHHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVV--EIEKIQESIAK 211 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~ 211 (405)
.-...+|+|++|+||||||+.||++. .. ++|+.++||.+++.. ...++++.|..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg 223 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKG 223 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcC
Confidence 55789999999999999999999977 43 389999999998887 77888888863
No 9
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.91 E-value=1.5e-05 Score=69.36 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=32.0
Q ss_pred cccchHHHHHHHHHhh---cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 138 IVGLESIFDKLWRCLT---EEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 138 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|+||+++++++...|. ....+.+.|+|.+|+|||+|.+.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999993 2367899999999999999999998866
No 10
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.81 E-value=3.7e-05 Score=62.90 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=60.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCC--CCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDE--PNYFDVVIWAVASKVVEIEKIQESIAKKIGFFNESWESKTVQEKAVDIFN 234 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~--~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 234 (405)
-+++.|+|.+|+|||+++..+.++.... ...-..++|+..+...+...+...|+.+++..... ..+..++...+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHH
Confidence 4688999999999999999999854100 00034667999888789999999999999876432 3456666677777
Q ss_pred HHcccch-----HHHHHHH
Q 043778 235 ILSKKKY-----EDAWKLF 248 (405)
Q Consensus 235 ~L~~kr~-----~ds~~Lf 248 (405)
.+...+. ||+-.|+
T Consensus 82 ~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHCTEEEEEEETTHHHH
T ss_pred HHHhcCCeEEEEeChHhcC
Confidence 7766654 5555543
No 11
>PRK08118 topology modulation protein; Reviewed
Probab=97.80 E-value=1.3e-05 Score=68.80 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCCEEEE
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEP-NYFDVVIW 193 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~-~~F~~~~w 193 (405)
+.|.|+|++|+||||||+.+++.. ... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhc
Confidence 358999999999999999999976 443 46777775
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.77 E-value=2.5e-05 Score=70.50 Aligned_cols=44 Identities=34% Similarity=0.371 Sum_probs=37.0
Q ss_pred cccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 138 IVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 138 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|+||+.++++|.+.+..+..+.+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 68999999999999987767899999999999999999999854
No 13
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.76 E-value=8.5e-05 Score=71.54 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCC--CCHHHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKV--VEIEKIQESIAKKI 213 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~i~~~l 213 (405)
.-..++|+|++|+|||||++.+++.. . .++|+..+|+.+.+. ..+.++++.++..+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~V 224 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEV 224 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceE
Confidence 55789999999999999999999966 3 347999999998865 78999999995544
No 14
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.72 E-value=0.00012 Score=60.44 Aligned_cols=58 Identities=29% Similarity=0.269 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCC
Q 043778 139 VGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKV 199 (405)
Q Consensus 139 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~ 199 (405)
+|++..+..+...+.......+.|+|++|+|||+|++.+++.. . ..-..++++..+..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhh
Confidence 3678888888888877667789999999999999999999965 2 22234556655443
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.65 E-value=0.00099 Score=72.74 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=48.2
Q ss_pred cccccchHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC-CCCHHHHHHHHHHHh
Q 043778 136 LTIVGLESIFDKLWRCLTE-EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK-VVEIEKIQESIAKKI 213 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i~~~l 213 (405)
+.++-|..- .+.|.. ...+++.|.|++|.||||++....+.. +.++|+++.. +-++..++..++..+
T Consensus 14 ~~~~~R~rl----~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~-------~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRERL----LAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGK-------NNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchHH----HHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhC-------CCeEEEecCcccCCHHHHHHHHHHHH
Confidence 445666644 444433 357899999999999999999987622 2689999864 446666777777777
Q ss_pred C
Q 043778 214 G 214 (405)
Q Consensus 214 ~ 214 (405)
+
T Consensus 83 ~ 83 (903)
T PRK04841 83 Q 83 (903)
T ss_pred H
Confidence 4
No 16
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.64 E-value=0.00033 Score=68.58 Aligned_cols=69 Identities=17% Similarity=0.062 Sum_probs=56.2
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQE 207 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 207 (405)
.++++.+...+.+...|... +.|.+.|++|+|||++|+.+++.. .....|+.+.||.++..++..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 45678888999999888753 467789999999999999999876 4456788899999998888776554
No 17
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.62 E-value=0.00097 Score=61.84 Aligned_cols=58 Identities=24% Similarity=0.325 Sum_probs=42.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIGFF 216 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~ 216 (405)
.+..++.|+|++|+|||||++.+++.. .. ... ..+|+ +....+..+++..|+..++.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~ 98 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLE 98 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCC
Confidence 355689999999999999999999865 32 111 22333 233467788999999998765
No 18
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.40 E-value=0.00019 Score=67.95 Aligned_cols=46 Identities=30% Similarity=0.458 Sum_probs=38.9
Q ss_pred cccccchHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-----EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|++..++.|..++.. .....+.++|++|+|||+||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999888862 345668899999999999999999865
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0015 Score=63.15 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=72.4
Q ss_pred cccccchHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTE----EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAK 211 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 211 (405)
+.+.+|+++++++...|.. +.+.-+.|+|.+|+|||+.++.+...........+ +++|..-...++..++..|++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4589999999999987753 34445999999999999999999996622112222 788888888899999999999
Q ss_pred HhCCCCCCCCcccHHHHHHHHHHHHcc
Q 043778 212 KIGFFNESWESKTVQEKAVDIFNILSK 238 (405)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~~~l~~~L~~ 238 (405)
+++... ....+..+.-..+.+.+..
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSK 120 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHh
Confidence 996321 2234455555666666655
No 20
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.35 E-value=0.00028 Score=62.49 Aligned_cols=50 Identities=28% Similarity=0.358 Sum_probs=32.8
Q ss_pred cccccchHHHHHHHHHhh-----cCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC
Q 043778 136 LTIVGLESIFDKLWRCLT-----EEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF 188 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F 188 (405)
+++||-+.-+.++.-.+. ++.+.-+.+||++|+||||||..+.+.. ...|
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~ 78 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNF 78 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--E
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCe
Confidence 557887777666544433 2356778899999999999999999965 4555
No 21
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.33 E-value=0.00019 Score=57.89 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999854
No 22
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.29 E-value=0.00069 Score=63.57 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=39.3
Q ss_pred CCccccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCC
Q 043778 133 PVALTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKV 199 (405)
Q Consensus 133 ~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~ 199 (405)
..+..++|-+.. |.+.+..+.+..+.+||++|+||||||+.+.+.. +.+ ..-||.+|..
T Consensus 141 vGQ~hlv~q~gl---lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~--SyrfvelSAt 199 (554)
T KOG2028|consen 141 VGQSHLVGQDGL---LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKH--SYRFVELSAT 199 (554)
T ss_pred cchhhhcCcchH---HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCC--ceEEEEEecc
Confidence 334555555333 3344455677888899999999999999999855 333 2445665543
No 23
>PRK07261 topology modulation protein; Provisional
Probab=97.28 E-value=0.00058 Score=58.88 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCC-CCCCEEEEE
Q 043778 159 IIGLYGMGSVGKTTLLILINNKFLDEP-NYFDVVIWA 194 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~~~~~-~~F~~~~wv 194 (405)
.|.|+|++|+||||||+.+.... ... -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEec
Confidence 58999999999999999998754 322 234555553
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.27 E-value=0.01 Score=61.78 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=49.2
Q ss_pred HHHHHHhhcC-CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhC
Q 043778 146 DKLWRCLTEE-QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKV-VEIEKIQESIAKKIG 214 (405)
Q Consensus 146 ~~l~~~L~~~-~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~ 214 (405)
..|.+.|.+. +.+.+.|.-|+|.|||||+-...... ..=.-+.|.+.++. -++......++..++
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 4566667665 78999999999999999998887522 12246899998764 567778888888775
No 25
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.00058 Score=65.02 Aligned_cols=60 Identities=25% Similarity=0.286 Sum_probs=41.1
Q ss_pred cCCCCCCcCCCCccccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC
Q 043778 123 RLPENPVDARPVALTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF 188 (405)
Q Consensus 123 ~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F 188 (405)
+.-|..+++...+.+++|-+..+. +++..+.+.-...||++|+||||||+.+.... ...|
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lr---r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f 76 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLR---RAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF 76 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHH---HHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce
Confidence 333444555445566666654444 34455677788899999999999999999843 5555
No 26
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.24 E-value=0.004 Score=64.59 Aligned_cols=46 Identities=33% Similarity=0.263 Sum_probs=40.0
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|.+.....+.+.+.......+.|+|++|+||||||+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999988888876667789999999999999999998865
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.16 E-value=0.0005 Score=65.89 Aligned_cols=46 Identities=30% Similarity=0.424 Sum_probs=38.7
Q ss_pred cccccchHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-----EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|++..++.+...+.. .....+.|+|++|+|||+||+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 5689999999988877752 245678899999999999999999965
No 28
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.15 E-value=0.0011 Score=65.72 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=37.1
Q ss_pred cccccchHHHHH---HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDK---LWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+..+.. +.+++..+....+.++|++|+||||||+.+.+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457887776555 7777777777788899999999999999999854
No 29
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.10 E-value=0.00079 Score=64.22 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=40.1
Q ss_pred cccccchHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.++.++++++++.. ..-+++.++|++|+||||||..+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999998864 245789999999999999999999866
No 30
>PRK06696 uridine kinase; Validated
Probab=97.02 E-value=0.0011 Score=59.82 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=33.7
Q ss_pred chHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 141 LESIFDKLWRCLTE---EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 141 r~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|..-+++|.+.+.. +...+|+|.|.+|+||||||+.+....
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 55667777777753 467899999999999999999999855
No 31
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.98 E-value=0.042 Score=51.15 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=57.9
Q ss_pred cccccch---HHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC----CEEEEEEeCCCCCHHHH
Q 043778 136 LTIVGLE---SIFDKLWRCLTEE---QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF----DVVIWAVASKVVEIEKI 205 (405)
Q Consensus 136 ~~~vGr~---~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F----~~~~wv~vs~~~~~~~l 205 (405)
+..||.. ..+++|.++|..+ ...-+.|||.+|.|||+++++..... -....= -.++.|.+...++...+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEEecCCCCChHHH
Confidence 3445543 3455666666554 34569999999999999999998644 211111 14677788889999999
Q ss_pred HHHHHHHhCCCC
Q 043778 206 QESIAKKIGFFN 217 (405)
Q Consensus 206 ~~~i~~~l~~~~ 217 (405)
...|+.+++.+-
T Consensus 113 Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 113 YSAILEALGAPY 124 (302)
T ss_pred HHHHHHHhCccc
Confidence 999999998764
No 32
>PF05729 NACHT: NACHT domain
Probab=96.94 E-value=0.0014 Score=55.56 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCC----CCEEEEEEeCCC
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEPNY----FDVVIWAVASKV 199 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~----F~~~~wv~vs~~ 199 (405)
+++.|+|.+|+||||+++.+.... ..... +...+|+.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 45 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDI 45 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhh
Confidence 578999999999999999998866 33332 345666665543
No 33
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.92 E-value=0.0012 Score=63.32 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=39.9
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|++..++.+.+++..+....+.++|++|+||||+|+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999998887766678899999999999999998854
No 34
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.90 E-value=0.0016 Score=58.63 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=39.4
Q ss_pred chHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeC
Q 043778 141 LESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVAS 197 (405)
Q Consensus 141 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs 197 (405)
.+..++.+.+++.......+.|+|++|+|||+||+.+++.. .......++++.+
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~ 75 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLA 75 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHH
Confidence 45567777777655567789999999999999999999865 2233345666543
No 35
>PRK06547 hypothetical protein; Provisional
Probab=96.87 E-value=0.0017 Score=55.96 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=28.3
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 147 KLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 147 ~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+...+......+|+|.|++|+||||||..+....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444555678899999999999999999998854
No 36
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.83 E-value=0.005 Score=58.55 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=40.2
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|++..++.+..++..+....+.++|++|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999987766668999999999999999998854
No 37
>PLN03025 replication factor C subunit; Provisional
Probab=96.81 E-value=0.0039 Score=59.45 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=38.3
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.|..++..++..-+.++|++|+||||+|..+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4578988888888888777666667799999999999999998854
No 38
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.78 E-value=0.0015 Score=70.19 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=39.5
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++||+.+++.+++.|......-+.++|++|+|||++|..+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999987655566799999999999999988754
No 39
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.76 E-value=0.0098 Score=62.61 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=57.3
Q ss_pred ccccccchHHHHHHHHHhhc----CC-ceEEEEEcCCCCcHHHHHHHHHhhccCC--CCCCC--EEEEEEeCCCCCHHHH
Q 043778 135 ALTIVGLESIFDKLWRCLTE----EQ-VGIIGLYGMGSVGKTTLLILINNKFLDE--PNYFD--VVIWAVASKVVEIEKI 205 (405)
Q Consensus 135 ~~~~vGr~~~~~~l~~~L~~----~~-~~vi~I~G~~GiGKTtLA~~v~~~~~~~--~~~F~--~~~wv~vs~~~~~~~l 205 (405)
++.++||+++.++|...|.. .+ ..++-|.|++|.|||+.++.|.+..... ..... .+++|....-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 46789999999999988753 23 3567899999999999999998754111 11122 3456655555677788
Q ss_pred HHHHHHHhC
Q 043778 206 QESIAKKIG 214 (405)
Q Consensus 206 ~~~i~~~l~ 214 (405)
+..|..+|.
T Consensus 834 YqvI~qqL~ 842 (1164)
T PTZ00112 834 YQVLYKQLF 842 (1164)
T ss_pred HHHHHHHHc
Confidence 888888884
No 40
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.74 E-value=0.002 Score=64.77 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=40.0
Q ss_pred cccccchHHHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT------EEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.++.++++++.|. +..-+++.++|++|+||||||+.+.+-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 457999999999999883 3456799999999999999999999855
No 41
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.73 E-value=0.0018 Score=69.51 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=40.0
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++||+.++.+++..|......-+.++|++|+||||+|..+.+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987766667799999999999999998743
No 42
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.71 E-value=0.0014 Score=57.78 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
||+|.|++|+||||||+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999866
No 43
>PTZ00301 uridine kinase; Provisional
Probab=96.70 E-value=0.0021 Score=57.22 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998744
No 44
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.048 Score=54.79 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|++|+||||++..+....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999998887644
No 45
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.002 Score=65.65 Aligned_cols=50 Identities=28% Similarity=0.332 Sum_probs=41.6
Q ss_pred cccccchHHHHHHHHHhhc----C--CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC
Q 043778 136 LTIVGLESIFDKLWRCLTE----E--QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF 188 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~----~--~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F 188 (405)
.+.+|.+...++|++.|.- + +-.++++||++|+|||.|++.|.... .+.|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf 378 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF 378 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE
Confidence 5679999999999998741 2 45799999999999999999999854 5666
No 46
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.66 E-value=0.015 Score=55.26 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=62.8
Q ss_pred ccccccchHHHHHHHHHhhcCC---ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043778 135 ALTIVGLESIFDKLWRCLTEEQ---VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAK 211 (405)
Q Consensus 135 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 211 (405)
.+.+.+|+..+..+..++-+.. +..|-|.|-+|.|||.+.+.+++.. . -..+|++.-..++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n---~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---N---LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---C---CcceeeehHHhccHHHHHHHHHH
Confidence 3678899999999998887642 4566899999999999999999855 2 24689999999999999999999
Q ss_pred HhC
Q 043778 212 KIG 214 (405)
Q Consensus 212 ~l~ 214 (405)
+++
T Consensus 79 ~~~ 81 (438)
T KOG2543|consen 79 KSQ 81 (438)
T ss_pred Hhc
Confidence 985
No 47
>PRK08233 hypothetical protein; Provisional
Probab=96.63 E-value=0.0018 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|.|.+|+||||||..+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999854
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=96.63 E-value=0.0019 Score=65.27 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHhhc---C-CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE---E-QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~---~-~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+...+.+.+|+.. + ..+.+.|+|++|+||||+|+.+.++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999998864 2 26789999999999999999999855
No 49
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.63 E-value=0.0025 Score=67.73 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++||+.++..+++.|......-+.++|++|+|||++|+.+.+..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999887655567799999999999999998753
No 50
>PHA00729 NTP-binding motif containing protein
Probab=96.62 E-value=0.003 Score=56.46 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 147 KLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 147 ~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555566789999999999999999998853
No 51
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.60 E-value=0.0018 Score=52.43 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043778 160 IGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~ 180 (405)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999984
No 52
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.59 E-value=0.002 Score=57.45 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+..+|+|.|.+|+|||||++.+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999844
No 53
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.59 E-value=0.0027 Score=66.73 Aligned_cols=46 Identities=39% Similarity=0.554 Sum_probs=35.7
Q ss_pred cccccchHHHH---HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFD---KLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+..+. .+.+.+..+....+.++|++|+||||||+.+++..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45788776653 45566666667778899999999999999999854
No 54
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.59 E-value=0.0026 Score=68.48 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=39.9
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++||+.++.++++.|......-+.++|++|+|||+||..+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987666667799999999999999998844
No 55
>PF13173 AAA_14: AAA domain
Probab=96.59 E-value=0.003 Score=51.57 Aligned_cols=39 Identities=28% Similarity=0.240 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCC
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKV 199 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~ 199 (405)
-+++.|.|+.|+|||||+++++.+. . ....++|++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCH
Confidence 4689999999999999999999865 2 3355677766554
No 56
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.0027 Score=52.98 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..-|.|.|++|+|||||++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999876
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.089 Score=55.03 Aligned_cols=46 Identities=26% Similarity=0.311 Sum_probs=39.1
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++||.+..++.|.+++..+. .+.+.++|..|+||||+|+.+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999998765 4567899999999999999887744
No 58
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.51 E-value=0.0033 Score=61.10 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=37.5
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++.|++..+++|.+.+.. ...+-+.++|++|+|||+||+.+++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999998887642 124569999999999999999999955
No 59
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.03 Score=57.30 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=40.1
Q ss_pred ccccccchHHHHHHHHHhhc----C--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 135 ALTIVGLESIFDKLWRCLTE----E--QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 135 ~~~~vGr~~~~~~l~~~L~~----~--~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.+|+++-++++++.+-- + +-.+++.+|++|||||.+|+.|....
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 35679999999999998742 2 67899999999999999999999855
No 60
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.50 E-value=0.0033 Score=54.30 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
...+|.+.|++|+||||+|+.+++.. ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45699999999999999999999865 4455555555
No 61
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.009 Score=52.87 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.+|||.|.+|+||||+|+.+....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999955
No 62
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.46 E-value=0.0034 Score=61.54 Aligned_cols=46 Identities=26% Similarity=0.258 Sum_probs=37.5
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++.|++..++++.+.+.. ..++-|.++|++|+|||++|+.+++..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 4578999999988876632 135678999999999999999999855
No 63
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.46 E-value=0.0027 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999754
No 64
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.46 E-value=0.0025 Score=56.72 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|++|+|||||++.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999855
No 65
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.45 E-value=0.0026 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+|+|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999985
No 66
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.0043 Score=62.17 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=38.4
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+.....|.+.+..+.+ +.+.++|++|+||||+|+.+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689988888888888877655 568999999999999999998754
No 67
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.43 E-value=0.0043 Score=59.01 Aligned_cols=46 Identities=11% Similarity=-0.007 Sum_probs=39.4
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+...+.+..++..+. ..++.++|++|+||||+|+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 567999999999999987764 5677789999999999999999854
No 68
>PRK07667 uridine kinase; Provisional
Probab=96.43 E-value=0.0043 Score=54.57 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=28.7
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.+.+.+.. +...+|+|-|.+|+||||+|..+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555543 345799999999999999999999855
No 69
>PRK06762 hypothetical protein; Provisional
Probab=96.42 E-value=0.0029 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999843
No 70
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.40 E-value=0.0058 Score=55.33 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+...+|+|.|++|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999999855
No 71
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.0052 Score=59.70 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=39.5
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|-+..++.+.+.+..+. .+.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 568999999999998887764 4678999999999999999998754
No 72
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.39 E-value=0.0055 Score=56.67 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=32.1
Q ss_pred ccccchHHHHHHHH---Hhh-------c-----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 137 TIVGLESIFDKLWR---CLT-------E-----EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 137 ~~vGr~~~~~~l~~---~L~-------~-----~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++|.+..++.|.+ ++. . +...-+.++|++|+||||+|+.+++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 47888776665543 321 0 134567899999999999999998753
No 73
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.37 E-value=0.0031 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|.|+|++|+||||+|+.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999999965
No 74
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.36 E-value=0.017 Score=52.38 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=37.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE--e-----CCCCCHHHH--HHHHHHHhCCCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV--A-----SKVVEIEKI--QESIAKKIGFFN 217 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~--v-----s~~~~~~~l--~~~i~~~l~~~~ 217 (405)
.+.+|.++||+|+||||+.+.++.+. ..+..-..++=.. | .-+.++++. .+....+.+..+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 46789999999999999999999876 3222212222111 1 123345543 667777765543
No 75
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.35 E-value=0.026 Score=52.74 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+.+|+|.|..|+||||||+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998876533
No 76
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.35 E-value=0.0053 Score=49.92 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
..+.|+|++|+||||+++.+.... .......+++..+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEE
Confidence 578999999999999999999855 22222455554433
No 77
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.33 E-value=0.0048 Score=66.65 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=39.4
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++||+.++.+++..|......-+.++|++|+|||++|..+....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987655666789999999999999988743
No 78
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.32 E-value=0.01 Score=52.82 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQE 207 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 207 (405)
.-+++.|+|++|+|||+|+.++.... ...-..++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 46799999999999999999987654 23346889998865 66655544
No 79
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.0069 Score=55.29 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=37.7
Q ss_pred cccccchHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-----EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|-+.-+++|.=.+.. +.+--+.++|++|.||||||.-+.+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 4689988887777666642 367789999999999999999999965
No 80
>PRK03839 putative kinase; Provisional
Probab=96.25 E-value=0.0038 Score=54.17 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|.|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999854
No 81
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.24 E-value=0.0041 Score=54.18 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+..+|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998743
No 82
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.22 E-value=0.0072 Score=53.54 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=50.3
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKI 205 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l 205 (405)
.++||-++.++.+.-...+++..-+.|.||+|+||||-+..+.+.. --...-+.++-...|+...+.-+
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGIDvV 95 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGIDVV 95 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccHHH
Confidence 4689999999988887788888889999999999999777777644 11223356666666666554433
No 83
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.22 E-value=0.0057 Score=64.67 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=38.4
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+.++||+.++.++++.|......-+.++|++|+|||++|+.+.+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999988754445568999999999999999874
No 84
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.21 E-value=0.0034 Score=55.40 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+|+|.|++|+||||||+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 85
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.21 E-value=0.017 Score=52.33 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCC----CCEEEEEEeCCCCCHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNY----FDVVIWAVASKVVEIEKIQE 207 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~----F~~~~wv~vs~~~~~~~l~~ 207 (405)
.-.++.|+|.+|+|||+||.++.-.. ..... ...++|++....++...+..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 45799999999999999999997533 21221 36889999877777655443
No 86
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.0055 Score=61.88 Aligned_cols=46 Identities=28% Similarity=0.238 Sum_probs=39.1
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|-+...+.|.+.+..+. .+.+.++|++|+||||+|+.+.+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999988888888887764 4577999999999999999998765
No 87
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.19 E-value=0.017 Score=50.81 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK-VVEIEKIQESIAKKIGFF 216 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i~~~l~~~ 216 (405)
+++|.++|+.|+||||.+-.+.... ..+ -..+..++... .....+=++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4799999999999999666665544 222 33566666543 234555677788888754
No 88
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.18 E-value=0.0035 Score=56.39 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|+|.|.+|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999855
No 89
>PRK08727 hypothetical protein; Validated
Probab=96.17 E-value=0.013 Score=53.15 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeC
Q 043778 139 VGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVAS 197 (405)
Q Consensus 139 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs 197 (405)
+|-......+.....+.....+.|+|.+|+|||.|++.+.+.. . .....+.|+++.
T Consensus 23 ~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~-~--~~~~~~~y~~~~ 78 (233)
T PRK08727 23 AAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA-E--QAGRSSAYLPLQ 78 (233)
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEEeHH
Confidence 3333344444333333344569999999999999999998865 2 223355677643
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.15 E-value=0.011 Score=53.29 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=29.6
Q ss_pred ccchHH-HHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 139 VGLESI-FDKLWRCLTE-EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 139 vGr~~~-~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.+.. ...+.++... .....+.|+|.+|+|||+||+.+++..
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 354433 3344444332 345678899999999999999999854
No 91
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.14 E-value=0.017 Score=52.57 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=38.6
Q ss_pred cccccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 136 LTIVGLES-IFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 136 ~~~vGr~~-~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
+.++|.+. ....+.++....+...+.|+|++|+|||+|++.+.+.. . ..-..+.|+++..
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~--~~~~~v~y~~~~~ 83 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL-S--QRGRAVGYVPLDK 83 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEEHHH
Confidence 44456333 34444444444455688999999999999999999865 2 2223556776543
No 92
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.026 Score=53.62 Aligned_cols=69 Identities=22% Similarity=0.364 Sum_probs=49.7
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcc---CCCCCCCEEEEEEe-CCCCCHHH
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKFL---DEPNYFDVVIWAVA-SKVVEIEK 204 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~~---~~~~~F~~~~wv~v-s~~~~~~~ 204 (405)
.+++|-+...+.+.+.+..+. .+.+.++|+.|+||||+|+.++.... ....|+|...|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 457898888999999997764 56889999999999999999987431 12456676666542 33344444
No 93
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.11 E-value=0.026 Score=60.48 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=36.9
Q ss_pred cccccchHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.+.+++.. ....++.++|++|+|||++|+.+.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578988888888876541 134589999999999999999999854
No 94
>PRK05439 pantothenate kinase; Provisional
Probab=96.10 E-value=0.052 Score=51.18 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..-+|+|.|.+|+||||+|+.+....
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999988744
No 95
>PRK04040 adenylate kinase; Provisional
Probab=96.07 E-value=0.0056 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999854
No 96
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.0087 Score=60.79 Aligned_cols=46 Identities=24% Similarity=0.288 Sum_probs=39.0
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|-+..++.|.+.+..+. .+.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999888764 4568899999999999999998744
No 97
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.06 E-value=0.0045 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999853
No 98
>PRK06893 DNA replication initiation factor; Validated
Probab=96.06 E-value=0.016 Score=52.42 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVAS 197 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs 197 (405)
....+.++|++|+|||+|++.+.+.. ......+.|+++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~---~~~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY---LLNQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEeeHH
Confidence 34578999999999999999999965 2223355677654
No 99
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.0089 Score=61.05 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=39.5
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.+.+.+..+. .+.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999887654 5678899999999999999998754
No 100
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.009 Score=59.36 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|-+..+..|..++..+.+ +.+.++|+.|+||||+|+.+.+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999899999999887764 468999999999999999998854
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.0091 Score=58.75 Aligned_cols=46 Identities=24% Similarity=0.200 Sum_probs=38.8
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+...+.|.+.+..+.+ +.+.++|+.|+||||+|..+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888888888887654 468899999999999999988755
No 102
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.01 E-value=0.0051 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998844
No 103
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.01 E-value=0.0059 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.|+|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998754
No 104
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.00 E-value=0.029 Score=50.46 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC------CEEEEEEeCCCCCHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF------DVVIWAVASKVVEIEKIQ 206 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F------~~~~wv~vs~~~~~~~l~ 206 (405)
.-.++.|+|.+|+|||+||..+.... ...- ..++|++....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 45799999999999999999987643 2222 567899887777765543
No 105
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.98 E-value=0.012 Score=58.33 Aligned_cols=44 Identities=9% Similarity=0.019 Sum_probs=37.3
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|+++.++.+...+..++ -|.|.|++|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 568999999999888887543 57789999999999999999854
No 106
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.93 E-value=0.024 Score=51.03 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=34.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKI 205 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l 205 (405)
.-.++.|+|.+|+|||+||.++.... ...-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHHH
Confidence 45799999999999999999988754 2234678899876 5555443
No 107
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.92 E-value=0.0062 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
++|+|+|+.|+|||||++.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999999983
No 108
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.92 E-value=0.011 Score=56.90 Aligned_cols=72 Identities=25% Similarity=0.182 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhhcC----CceEEEEEcCCCCcHHH-HHHHHHhhccCCCCCCCEEEEEEeCCCCC--HHHHHHHHHHHhC
Q 043778 142 ESIFDKLWRCLTEE----QVGIIGLYGMGSVGKTT-LLILINNKFLDEPNYFDVVIWAVASKVVE--IEKIQESIAKKIG 214 (405)
Q Consensus 142 ~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTt-LA~~v~~~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~i~~~l~ 214 (405)
.+....+..++..+ +.++|++||+.|||||| ||+..+.-. . ...-.-+..++.. .+. ..+=++....-++
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~-~-~~~~~kVaiITtD-tYRIGA~EQLk~Ya~im~ 260 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV-M-LKKKKKVAIITTD-TYRIGAVEQLKTYADIMG 260 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH-h-hccCcceEEEEec-cchhhHHHHHHHHHHHhC
Confidence 33445555555544 47899999999999998 888776532 1 1222345566543 232 2222444444444
Q ss_pred CC
Q 043778 215 FF 216 (405)
Q Consensus 215 ~~ 216 (405)
.+
T Consensus 261 vp 262 (407)
T COG1419 261 VP 262 (407)
T ss_pred Cc
Confidence 43
No 109
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0071 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999976
No 110
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.90 E-value=0.0061 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|+|.|.+|+||||||..+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999865
No 111
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.90 E-value=0.011 Score=54.32 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=65.3
Q ss_pred ccchhhhhhhHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHH
Q 043778 9 CDSNITRCPDCTVRKASSIRDLQKNLEALPRELQKLVETRNDVRIRVIVAEQQKMKRLEQVEPWFSRVQDAESEVAKLML 88 (405)
Q Consensus 9 ~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~ayd~eD~ld 88 (405)
++.+++.|.+...+....+.-++.+++-++.+++.|+.||+.+ ++++..+++. ....+.++...||++|.++|
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeeee
Confidence 5667778888888888888889999999999999999999997 6665556544 99999999999999999999
Q ss_pred HHH
Q 043778 89 ERN 91 (405)
Q Consensus 89 ~~~ 91 (405)
.+-
T Consensus 371 aCi 373 (402)
T PF12061_consen 371 ACI 373 (402)
T ss_pred hhh
Confidence 864
No 112
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.90 E-value=0.013 Score=51.09 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.++|.|+|+.|+|||||+..+.... ...|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999855 67785544444
No 113
>PRK00625 shikimate kinase; Provisional
Probab=95.89 E-value=0.0068 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.337 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998854
No 114
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.012 Score=60.54 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=39.9
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+...+.|.+++..+. .+.+.++|+.|+||||+|+.+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999998765 5688999999999999999988754
No 115
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.88 E-value=0.032 Score=49.94 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=32.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVE 201 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~ 201 (405)
.-.++.|.|.+|+||||||.++.... ...=..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 46799999999999999999988754 22234677887655543
No 116
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.86 E-value=0.0065 Score=50.47 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999854
No 117
>PRK06217 hypothetical protein; Validated
Probab=95.85 E-value=0.0078 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|.|++|+||||||+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999865
No 118
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.83 E-value=0.015 Score=49.93 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=32.2
Q ss_pred cccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 138 IVGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 138 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|....+.++.+.+.. ....-|.|+|..|+||+.+|+.|++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46777777877777653 333566799999999999999999954
No 119
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.83 E-value=0.0082 Score=51.46 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.++|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999854
No 120
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.81 E-value=0.031 Score=54.55 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHhhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEE--------------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.+.-.+... ..+-|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789888888876555431 24688999999999999999999855
No 121
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.80 E-value=0.017 Score=47.24 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=28.2
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 144 IFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 144 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+..++.+.|.. ..-.+|.+.|.-|+|||||++.+.+..
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444432 244689999999999999999999865
No 122
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.78 E-value=0.013 Score=56.16 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=39.9
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.+||-+..+..|...+.++++.-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999888888888888877778899999999999999997643
No 123
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.78 E-value=0.012 Score=54.27 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=43.8
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHH
Q 043778 145 FDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQES 208 (405)
Q Consensus 145 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 208 (405)
-.+|+..+.. ++..+|+|.|.||+|||||.-.+-... ....|=-.++=|+-|.+++--.|+.+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccccc
Confidence 3456666543 578899999999999999998888766 44454445555556667765555443
No 124
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.0076 Score=50.36 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 043778 159 IIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIGFF 216 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~ 216 (405)
+|.|-|++|+||||+|+.+.++. . -.| .+.-.++++|+...+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-g--l~~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-G--LKL-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-C--Cce-----------eeccHHHHHHHHHcCCC
Confidence 78999999999999999999866 2 111 12335667777766543
No 125
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.78 E-value=0.011 Score=53.68 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHH
Q 043778 144 IFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQ 206 (405)
Q Consensus 144 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 206 (405)
...++++.+.. ++..+|+|.|+||+|||||.-.+.... +.+.+=-.++=|+-|.+++--.|+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCccc
Confidence 45566666653 478899999999999999999988766 433333345555555566554444
No 126
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.76 E-value=0.0082 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|+|++|+|||||++.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999854
No 127
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.76 E-value=0.0099 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|.|+|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999865
No 128
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.75 E-value=0.0076 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+|.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999874
No 129
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.74 E-value=0.0099 Score=51.02 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+++|+|..|+|||||+..+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45699999999999999999999755
No 130
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.73 E-value=0.011 Score=49.80 Aligned_cols=36 Identities=25% Similarity=0.087 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
..+|-|.|.+|+||||||+.+.+.. . ..-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L-~--~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL-F--ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH-H--HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEec
Confidence 4689999999999999999999866 2 2223455553
No 131
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.72 E-value=0.026 Score=60.17 Aligned_cols=47 Identities=30% Similarity=0.287 Sum_probs=39.0
Q ss_pred ccccccchHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 135 ALTIVGLESIFDKLWRCLTE------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 135 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+++|.+..++.++++|.. ....++.++|++|+||||+|+.+....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999988752 245689999999999999999999844
No 132
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.015 Score=58.33 Aligned_cols=44 Identities=30% Similarity=0.349 Sum_probs=37.7
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHh
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.++||-+..++.|.+.+..+.+ +.+.++|+.|+||||+|+.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 5689999888888888877654 4899999999999999999876
No 133
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.71 E-value=0.01 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998743
No 134
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.71 E-value=0.01 Score=49.22 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
.+|.|+|..|+|||||++.+.+.. . +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEccC
Confidence 489999999999999999999876 3 13344444454443
No 135
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.0091 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999853
No 136
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.0085 Score=50.71 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 043778 159 IIGLYGMGSVGKTTLLILIN 178 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~ 178 (405)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999987
No 137
>PRK10536 hypothetical protein; Provisional
Probab=95.66 E-value=0.028 Score=51.20 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 137 TIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 137 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.+.++......++..|.+. .++.+.|++|+|||+||..+..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 3566777788888888663 49999999999999999998875
No 138
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.65 E-value=0.01 Score=49.03 Aligned_cols=43 Identities=28% Similarity=0.175 Sum_probs=30.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHH
Q 043778 160 IGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQES 208 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 208 (405)
|.++|++|+|||+||+.+.... .. ...-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEeccccccccceee
Confidence 6789999999999999999844 11 2334566777777766543
No 139
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.65 E-value=0.016 Score=56.84 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=36.2
Q ss_pred cccccchHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT----E---------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.|.+..+++|.+.+. . ..++-+.++|++|+|||+||+.+.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 457788888887776553 1 135779999999999999999999854
No 140
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.64 E-value=0.014 Score=49.06 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCC
Q 043778 159 IIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVV 200 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~ 200 (405)
++.|.|++|+||||++..+.... ...-..++|++....+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 47899999999999999998855 2233577788766544
No 141
>CHL00181 cbbX CbbX; Provisional
Probab=95.64 E-value=0.019 Score=53.81 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=31.7
Q ss_pred cccccchHHHHHHHHHh---h-----c-------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCL---T-----E-------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L---~-----~-------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|.+..+++|.+.. . . .....+.++|++|+||||+|+.+++..
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35788877666554432 1 0 122347889999999999999997743
No 142
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.62 E-value=0.0098 Score=51.94 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.|+|++|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999998743
No 143
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.61 E-value=0.0094 Score=49.29 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999984
No 144
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.60 E-value=0.0091 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|-|+|.+|+|||+||..+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999977644
No 145
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.60 E-value=0.014 Score=51.93 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=26.6
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 151 CLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 151 ~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+...++++|+++|..|+|||||..++.+..
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999999998854
No 146
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.016 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|.+|+|||||++.+..-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 4468999999999999999999863
No 147
>PRK14527 adenylate kinase; Provisional
Probab=95.60 E-value=0.012 Score=51.59 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|+|++|+||||+|+.+....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 148
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.016 Score=61.44 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=39.5
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|-+..++.|.+.+..+.+ +.+.++|+.|+||||+|+.+.+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999887654 456899999999999999999855
No 149
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.59 E-value=0.014 Score=53.82 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=39.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAK 211 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 211 (405)
.-+++.|.|.+|+|||+++.+..... ......++||+..+. ..++.+.+.+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 56799999999999999999988754 455788999988764 4455555443
No 150
>PRK13947 shikimate kinase; Provisional
Probab=95.57 E-value=0.01 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999854
No 151
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.57 E-value=0.02 Score=55.31 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=39.0
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.+.+.+..+. .+.+.++|++|+||||+|+.+....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999987764 4578899999999999999887653
No 152
>PRK14530 adenylate kinase; Provisional
Probab=95.57 E-value=0.011 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|+|++|+||||+|+.+....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 153
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.56 E-value=0.013 Score=51.77 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....+|.|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998844
No 154
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.56 E-value=0.012 Score=46.92 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999755
No 155
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.55 E-value=0.012 Score=46.12 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 043778 157 VGIIGLYGMGSVGKTTLLILIN 178 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~ 178 (405)
-..++|+|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 156
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.55 E-value=0.21 Score=49.52 Aligned_cols=57 Identities=25% Similarity=0.211 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVE--IEKIQESIAKKIGFF 216 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~i~~~l~~~ 216 (405)
.+.+|.++|.+|+||||++..+.... ... .+ .++.|+. +.+. ..+-+..+...++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~~-g~-kV~lV~~-D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KKK-GL-KVGLVAA-DTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HHc-CC-eEEEecC-CCCCHHHHHHHHHHHHHcCCc
Confidence 46899999999999999999998766 322 22 3344443 2233 344566667776554
No 157
>PRK13949 shikimate kinase; Provisional
Probab=95.55 E-value=0.011 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.288 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-|.|+|++|+||||+++.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999855
No 158
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.54 E-value=0.019 Score=51.89 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.++|+|.+|+|||||...+.... ...|..+.+++
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEe
Confidence 3468899999999999999999854 77887776664
No 159
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.019 Score=58.23 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=39.4
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++||-+..++.|.+++..+.+ +.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999987654 467899999999999999988754
No 160
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.52 E-value=0.019 Score=59.15 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=38.8
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++||-+..++.|.+.+..+.+ +.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689988888899999887654 678999999999999999996643
No 161
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.51 E-value=0.022 Score=54.49 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=38.0
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..+||-+..+..|+-.+.+++..-+.|.|.+|+|||||++.+..-
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 457999988888877777776677889999999999999999753
No 162
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.021 Score=55.56 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=39.5
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+...+.+.+.+..+. .+.+.++|++|+||||+|..+.+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999998764 4588999999999999999998754
No 163
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.49 E-value=0.22 Score=49.42 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEe
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVA 196 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~v 196 (405)
.++++++|++|+||||++..+.... .....-..+..|+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEEC
Confidence 4699999999999999888877644 20112234556654
No 164
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.48 E-value=0.027 Score=50.13 Aligned_cols=43 Identities=28% Similarity=0.384 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHH
Q 043778 159 IIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIE 203 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 203 (405)
.|+|.|.||+||||+|..+.....+ ++-| .++-|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCCc-eEEEEeCCCCCChH
Confidence 6899999999999999995553312 2212 34445555555443
No 165
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.023 Score=53.66 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 138 IVGLESIFDKLWRCLT----E---------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 138 ~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+=|.+..+++|.+... + +.++-|.++|++|.|||-||++|.|+-
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3457888888777654 1 257789999999999999999999943
No 166
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.47 E-value=0.025 Score=52.56 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=26.5
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 151 CLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 151 ~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++...+..+|.|+|.+|+|||||...+.+..
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444588999999999999999999999854
No 167
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.46 E-value=0.019 Score=58.59 Aligned_cols=45 Identities=27% Similarity=0.273 Sum_probs=38.1
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
++++|.+..++.+...+......-+.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458999989998888777665566789999999999999999864
No 168
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.44 E-value=0.055 Score=56.13 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=50.2
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIGF 215 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 215 (405)
+.++|.+.....+...+.... -+.++|++|+||||||+.+.+.. . ...|...+++.-+ ..+..+++..++..++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 567898888777776666543 45599999999999999999854 2 2234444444322 23455667777777653
No 169
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.44 E-value=0.021 Score=58.66 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=39.7
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++||-+..++.|.+.+..+. .+.+.++|..|+||||+|+.+.+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999998775 4567999999999999999998755
No 170
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.43 E-value=0.16 Score=50.02 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.+|.++|..|+||||++..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998887655
No 171
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.43 E-value=0.021 Score=59.20 Aligned_cols=46 Identities=28% Similarity=0.370 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.|.+++..+. .+.+.++|+.|+||||+|+.+.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 568999999999999998765 4578999999999999999987743
No 172
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.43 E-value=0.069 Score=50.69 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPN----YFDVVIWAVASKVVEIEKIQESIAKKIG 214 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 214 (405)
.-.++-|+|.+|+|||+|+.++.-.. .... .=..++||+....|+...+.+ ++..++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 46789999999999999999987654 2111 113789999888888877653 444544
No 173
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.41 E-value=0.046 Score=53.36 Aligned_cols=46 Identities=20% Similarity=0.139 Sum_probs=37.2
Q ss_pred cccccchHHHHHHHHHhhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEE--------------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.+...+.+. ..+-|.++|++|+|||+||+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 55899998888888776430 24678999999999999999998854
No 174
>PRK09087 hypothetical protein; Validated
Probab=95.41 E-value=0.036 Score=50.01 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....+.|+|++|+|||+|++.+.+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34578999999999999999988743
No 175
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.41 E-value=0.011 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999844
No 176
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.40 E-value=0.012 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.|+|+|.||+||||++..+....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 479999999999999998887655
No 177
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.40 E-value=0.02 Score=56.68 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=35.9
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.|.+..+++|.+.+.- ....-+.++|++|+|||+||+.+.+..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3567888888888776531 134568899999999999999999954
No 178
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.40 E-value=0.029 Score=54.05 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=40.0
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+...+.+...+..+. .+.+.|+|+.|+||||||..+.+..
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 568999999999999998764 5679999999999999999988755
No 179
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.39 E-value=0.013 Score=49.10 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998744
No 180
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.39 E-value=0.0084 Score=48.44 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCC
Q 043778 160 IGLYGMGSVGKTTLLILINNKFLDEPNYFD 189 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~~~~~~~F~ 189 (405)
|.|+|.+|+||||+|+.+.... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 5789999999999999999844 56664
No 181
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.37 E-value=0.066 Score=50.99 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC----CEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF----DVVIWAVASKVVEIEKIQESIAKKIG 214 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F----~~~~wv~vs~~~~~~~l~~~i~~~l~ 214 (405)
...++-|+|++|+|||+|+.++.-.. .....+ ..++|++....|++..+.+. ++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcC
Confidence 46789999999999999999987643 211111 47899999888888776543 44444
No 182
>PRK13975 thymidylate kinase; Provisional
Probab=95.36 E-value=0.015 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999966
No 183
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.35 E-value=0.017 Score=50.51 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+..+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999874
No 184
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.33 E-value=0.039 Score=57.19 Aligned_cols=74 Identities=9% Similarity=0.101 Sum_probs=54.9
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIG 214 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 214 (405)
+.++|.+..++.|...+... +.+.++|++|+||||+|+.+.+.. - ..+|+..+|..- ...+...+++.++..+|
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 56889888888877766654 468899999999999999998754 2 234577777654 33467777888877665
No 185
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.023 Score=58.71 Aligned_cols=46 Identities=24% Similarity=0.230 Sum_probs=38.7
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|-+..+..|.+.+..+.+ +.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999888988888877654 568999999999999999888754
No 186
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.32 E-value=0.017 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.|+|+.|+|||||++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999999854
No 187
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.027 Score=55.09 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=37.8
Q ss_pred cccccchHHHHHHHHHhhcCC----------ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ----------VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
++++|-+..++.|.+.+..+. .+-+.++|++|+|||++|..+...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 457898988999998887652 567889999999999999998764
No 188
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.29 E-value=0.025 Score=57.09 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=38.7
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|-+..+..|...+..+. .+.+.++|+.|+||||+|+.+++..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457999988888888777664 4688999999999999999998754
No 189
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.28 E-value=0.018 Score=50.71 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999843
No 190
>PRK06620 hypothetical protein; Validated
Probab=95.27 E-value=0.042 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+-|+|++|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999988754
No 191
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.27 E-value=0.017 Score=51.29 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
..+.|.|+|++|+|||||+..+..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 567899999999999999999975
No 192
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.27 E-value=0.026 Score=49.69 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.|++|.|++|+|||||.+-+..-. . .=.+.+|+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE-~---~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE-E---PDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc-C---CCCceEEEC
Confidence 44699999999999999999998733 2 224778875
No 193
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.26 E-value=0.015 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 194
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.028 Score=57.35 Aligned_cols=46 Identities=26% Similarity=0.377 Sum_probs=39.0
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|-+..++.|.+++..+.+ +.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999887654 567899999999999999997754
No 195
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.23 E-value=0.092 Score=50.57 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=49.1
Q ss_pred HHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCE-EEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 043778 145 FDKLWRCLTE-EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDV-VIWAVASKV-VEIEKIQESIAKKIGFF 216 (405)
Q Consensus 145 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~-~~wv~vs~~-~~~~~l~~~i~~~l~~~ 216 (405)
..++++.+.- +.-..+.|+|.+|+|||||++.+.+.. . .++-+. ++|+.+.+. -.+.+++..+...+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i-~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV-A-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH-H-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3346666653 345678999999999999999988854 2 122233 467677765 46788999988877643
No 196
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=0.5 Score=46.43 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=66.1
Q ss_pred ccccccchHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 043778 135 ALTIVGLESIFDKLWRCLTE----EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIA 210 (405)
Q Consensus 135 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 210 (405)
+..++||+.+.+.+.+++.. ....-+-|.|.+|.|||.+...++.+. .....=-.++++.-..--....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~-~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSL-SKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhh-hhhcccceeEEEeeccccchHHHHHHHH
Confidence 35689999999999998864 357788999999999999999999866 2211112446665433345666777777
Q ss_pred HHhCCCCCCCCcccHHHHHHHHHHHHcccch
Q 043778 211 KKIGFFNESWESKTVQEKAVDIFNILSKKKY 241 (405)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 241 (405)
..+..... ......+....+.++....++
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~ 256 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKF 256 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccc
Confidence 77621110 111123444555555555553
No 197
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.22 E-value=0.078 Score=51.63 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=50.0
Q ss_pred chHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHH-HHHHhhccCCCCCCCEEEEEEeC---CCCCHHHHHHHHHHHhCC
Q 043778 141 LESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLL-ILINNKFLDEPNYFDVVIWAVAS---KVVEIEKIQESIAKKIGF 215 (405)
Q Consensus 141 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA-~~v~~~~~~~~~~F~~~~wv~vs---~~~~~~~l~~~i~~~l~~ 215 (405)
|.+..++|..||.+..-..|.|.||.|+||+.|+ .++.++. + + ++.++.. +.-+-..+++.++.++|-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~--~----vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-K--N----VLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-C--C----EEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 4567899999999887789999999999999999 7777643 1 2 5556432 234455677777777753
No 198
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.21 E-value=0.028 Score=58.22 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=39.1
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++||-+..++.|.+.+..+.+ +.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999998887654 557899999999999999998754
No 199
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.19 E-value=0.021 Score=57.55 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=36.2
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 3466788888888776531 135668999999999999999999965
No 200
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.17 E-value=0.016 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
||+|+|+.|+|||||+..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999865
No 201
>PLN02200 adenylate kinase family protein
Probab=95.16 E-value=0.02 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.092 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.+|.|.|++|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998744
No 202
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.15 E-value=0.017 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|+|.|.||+||||++..+....
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 479999999999999888887755
No 203
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.021 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..++.|.|++|+|||||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 358899999999999999999983
No 204
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.15 E-value=0.078 Score=48.21 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESI 209 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 209 (405)
.-+++.|.|.+|+|||+||.++.... ...-..++|++... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 56799999999999999999865432 12235788888765 455555553
No 205
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.13 E-value=0.016 Score=49.29 Aligned_cols=20 Identities=40% Similarity=0.421 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 043778 160 IGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~ 179 (405)
|+|.|..|+|||||+..+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999997
No 206
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.13 E-value=0.019 Score=49.65 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|+|++|+|||||++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999855
No 207
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.12 E-value=0.029 Score=53.54 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=35.8
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHh
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
+.++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+.+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 56799998888877666545555688999999999999999865
No 208
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.12 E-value=0.018 Score=47.29 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
-.+++|+|..|+|||||.+.+.... ....+.+++.
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~----~~~~G~i~~~ 45 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL----PPDSGSILIN 45 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS----HESEEEEEET
T ss_pred CCEEEEEccCCCccccceeeecccc----cccccccccc
Confidence 3589999999999999999998743 2245666553
No 209
>PRK05642 DNA replication initiation factor; Validated
Probab=95.12 E-value=0.069 Score=48.47 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeC
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVAS 197 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs 197 (405)
...+.|+|.+|+|||.|++.+.+.. . ..-..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHH
Confidence 3578999999999999999998854 2 112356777653
No 210
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.11 E-value=0.018 Score=49.31 Aligned_cols=22 Identities=41% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|.|.|.+|+|||||.+.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998865
No 211
>PRK04182 cytidylate kinase; Provisional
Probab=95.10 E-value=0.02 Score=49.35 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999854
No 212
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.10 E-value=0.036 Score=51.87 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=30.8
Q ss_pred ccccchHHHHHHHHHhh---c-------C-----CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 137 TIVGLESIFDKLWRCLT---E-------E-----QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 137 ~~vGr~~~~~~l~~~L~---~-------~-----~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++|.++.+++|.+... . + ...-+.++|++|+|||++|+.+....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 57888777666554321 1 0 12258899999999999998776644
No 213
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.07 E-value=0.029 Score=46.38 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=31.4
Q ss_pred ccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 139 VGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 139 vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
||.....+++.+.+.. ....-|.|.|..|+||+++|+.+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666667777766653 344567899999999999999999865
No 214
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.06 E-value=0.041 Score=44.33 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=33.1
Q ss_pred cccccchHHHHHHHHHhh----c---CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 136 LTIVGLESIFDKLWRCLT----E---EQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..++|-.-..+.+++.+. + +++-|++.+|.+|+|||.+++.|.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 456776655555555554 3 26779999999999999988887765
No 215
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.04 E-value=0.033 Score=57.50 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.|.+.+..+. .+-+.++|+.|+||||+|+.+.+..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 568999999999999998765 4578999999999999999998744
No 216
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.02 E-value=0.019 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|+|+|.|||||||++..+..-.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578899999999999998887644
No 217
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.035 Score=56.99 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=39.3
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.|.+++..+. .+.+.++|+.|+||||+|+.+.+..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999998765 4567899999999999999988754
No 218
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.00 E-value=0.056 Score=51.05 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=39.4
Q ss_pred cccccchHHHH---HHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC
Q 043778 136 LTIVGLESIFD---KLWRCLTEE--QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF 188 (405)
Q Consensus 136 ~~~vGr~~~~~---~l~~~L~~~--~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F 188 (405)
..+||-....+ -+++++.++ .-+.|.|+|++|.|||+||..+.+.. -...+|
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF 95 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPF 95 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCc
Confidence 56888655444 355666555 56799999999999999999999977 555666
No 219
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.00 E-value=0.038 Score=50.99 Aligned_cols=53 Identities=23% Similarity=0.371 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-CEEEEEEeCCCCC-HHHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF-DVVIWAVASKVVE-IEKIQESIAK 211 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F-~~~~wv~vs~~~~-~~~l~~~i~~ 211 (405)
.-+.++|.|.+|+|||||++.+++.. +.+| +.++++-+++... ..++...+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 45689999999999999999999965 4455 4566667777654 4666666654
No 220
>PRK13948 shikimate kinase; Provisional
Probab=95.00 E-value=0.024 Score=49.22 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+.|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999854
No 221
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.99 E-value=0.02 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|+|+|.||+||||+|..+....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999998887655
No 222
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.99 E-value=0.044 Score=49.42 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=37.5
Q ss_pred cccccchHHHHHHHHH----hhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRC----LTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~----L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|.+..++.|++- +.+....-+.+||..|.|||+|++.+.+..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 6789999888877753 334456678889999999999999999866
No 223
>PLN02348 phosphoribulokinase
Probab=94.97 E-value=0.034 Score=53.80 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+..-+|+|.|.+|+||||||+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999865
No 224
>PRK06761 hypothetical protein; Provisional
Probab=94.96 E-value=0.052 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|.|.|++|+||||+++.+.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999865
No 225
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.95 E-value=0.042 Score=46.53 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 143 SIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 143 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+++|...|.+ +++.++|.+|+|||||...+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 346677777754 799999999999999999998853
No 226
>PRK13946 shikimate kinase; Provisional
Probab=94.95 E-value=0.024 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.|.++|++|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999854
No 227
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.93 E-value=0.036 Score=56.22 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=33.3
Q ss_pred cccccchHHHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCL---TE---------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+..++++.+.+ .. ...+-+.++|++|+|||+||+.+.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 45788777665555433 22 134468899999999999999999854
No 228
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.93 E-value=0.022 Score=49.82 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 229
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.92 E-value=0.031 Score=50.82 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.0
Q ss_pred EEcCCCCcHHHHHHHHHhhc
Q 043778 162 LYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 162 I~G~~GiGKTtLA~~v~~~~ 181 (405)
|+||+|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999877
No 230
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.92 E-value=0.024 Score=48.45 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|.|.|+.|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998743
No 231
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.90 E-value=0.064 Score=51.12 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=28.8
Q ss_pred HHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLT--EEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+.+.+. .++..+|+|.|.+|+|||||+..+....
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555554 2467899999999999999999987755
No 232
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.89 E-value=0.022 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|+|.|.||+||||++..+....
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 478888999999999999987755
No 233
>PRK14532 adenylate kinase; Provisional
Probab=94.89 E-value=0.023 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|.|.|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998744
No 234
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.89 E-value=0.033 Score=49.14 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.|+|+.|+||||++..+.+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999887744
No 235
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.89 E-value=0.13 Score=47.19 Aligned_cols=80 Identities=13% Similarity=0.008 Sum_probs=42.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCC--CCHHHHHHHHHHHhC--CCCCC--CCcccHHHHHHHH
Q 043778 159 IIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKV--VEIEKIQESIAKKIG--FFNES--WESKTVQEKAVDI 232 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~i~~~l~--~~~~~--~~~~~~~~~~~~l 232 (405)
+|+|.|.+|+||||++..+.+.. +... .....++...- ++-...-..+..... .+=+. ....+.+.+...+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999888754 2111 12333433221 222233222222221 11111 2345666777777
Q ss_pred HHHHcccch
Q 043778 233 FNILSKKKY 241 (405)
Q Consensus 233 ~~~L~~kr~ 241 (405)
+...+++..
T Consensus 78 ~~L~~g~~i 86 (277)
T cd02029 78 RTYGETGRG 86 (277)
T ss_pred HHHHcCCCc
Confidence 776665543
No 236
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.89 E-value=0.024 Score=53.41 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 154 EEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++.++|++.|.|||||||+|..+..-.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 4567999999999999999888876544
No 237
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.88 E-value=0.13 Score=46.35 Aligned_cols=53 Identities=23% Similarity=0.202 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIG 214 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 214 (405)
.-.++.|.|.+|+||||||..+.... ...-..++|++...+ ...+... +.+++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~---~~~g~~~~~is~e~~--~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG---LRDGDPVIYVTTEES--RESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH---HhcCCeEEEEEccCC--HHHHHHH-HHHhC
Confidence 45799999999999999999876433 112346788876443 3444433 34443
No 238
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.88 E-value=0.05 Score=51.69 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=40.5
Q ss_pred cccccchHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.++.++++++.+.. ..-+|+-++|+.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999998863 256899999999999999999999855
No 239
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.87 E-value=0.1 Score=48.00 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=40.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPN----YFDVVIWAVASKVVEIEKIQESIAKKI 213 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l 213 (405)
.-.++=|+|.+|+|||.|+..+.-.. .... .=..++|++-...|+...+. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 45699999999999999998887543 2221 12468999988889887765 455554
No 240
>COG3899 Predicted ATPase [General function prediction only]
Probab=94.87 E-value=0.083 Score=57.00 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=38.6
Q ss_pred cccchHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 138 IVGLESIFDKLWRCLTE---EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 138 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++||+.+++.|...+.+ +...++.+.|.+|||||+|+..|..-.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i 48 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPI 48 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHH
Confidence 68999999999988864 456799999999999999999999844
No 241
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.83 E-value=0.04 Score=45.56 Aligned_cols=24 Identities=38% Similarity=0.322 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.|.++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468899999999999999998854
No 242
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.82 E-value=0.044 Score=54.76 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=39.1
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..+..|.+.+..+.. +.+.++|+.|+||||+|+.+.+..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5689999999999999887654 678899999999999999987744
No 243
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.82 E-value=0.044 Score=53.12 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=39.1
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+...+.|.+.+..+. .+.+.++|+.|+||+|+|..+.+..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999988775 4579999999999999998877643
No 244
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.82 E-value=0.024 Score=49.57 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999843
No 245
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.025 Score=50.93 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.-..|+|+|++|+|||||-+.|..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999986
No 246
>PRK08356 hypothetical protein; Provisional
Probab=94.81 E-value=0.027 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 043778 157 VGIIGLYGMGSVGKTTLLILIN 178 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~ 178 (405)
..+|+|.|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999993
No 247
>PLN02796 D-glycerate 3-kinase
Probab=94.80 E-value=0.028 Score=53.52 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+-+|+|.|..|+|||||++.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999999999855
No 248
>PF13245 AAA_19: Part of AAA domain
Probab=94.80 E-value=0.033 Score=40.85 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=17.5
Q ss_pred CceEEEEEcCCCCcHHHH-HHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTL-LILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtL-A~~v~~ 179 (405)
+.++..|.|++|.|||++ +..+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 346788899999999954 444444
No 249
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.79 E-value=0.024 Score=47.98 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|++|+|..|+|||||...+....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4699999999999999999998755
No 250
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.79 E-value=0.027 Score=49.70 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
..+|+|+|+.|+||||+|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 251
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.32 Score=49.66 Aligned_cols=46 Identities=28% Similarity=0.285 Sum_probs=34.0
Q ss_pred cchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC
Q 043778 140 GLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF 188 (405)
Q Consensus 140 Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F 188 (405)
|.++-+.+|.+.+.- ..++-|..+|++|.|||++|+.+.+.. +..|
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF 496 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF 496 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe
Confidence 466555555544431 257789999999999999999999955 5666
No 252
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.78 E-value=0.053 Score=51.39 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHH
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQE 207 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 207 (405)
.+++.+.|.|||||||+|-...-.. ......++-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l---A~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL---AESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH---HHcCCcEEEEEeCCCCchHhhhc
Confidence 4789999999999999988854433 12223366666555545544443
No 253
>PRK12377 putative replication protein; Provisional
Probab=94.77 E-value=0.022 Score=52.09 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEe
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVA 196 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~v 196 (405)
+...+.++|.+|+|||.||..+.+.. ......++++++
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l---~~~g~~v~~i~~ 137 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRL---LAKGRSVIVVTV 137 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEEEH
Confidence 34678999999999999999999976 233334566654
No 254
>PRK14531 adenylate kinase; Provisional
Probab=94.73 E-value=0.029 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..|.|.|++|+||||+++.+....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998854
No 255
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.73 E-value=0.024 Score=49.13 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 043778 159 IIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~ 179 (405)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 256
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.72 E-value=0.029 Score=52.47 Aligned_cols=26 Identities=46% Similarity=0.640 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|+.|+||||++..+....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887754
No 257
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.72 E-value=0.056 Score=47.59 Aligned_cols=42 Identities=26% Similarity=0.131 Sum_probs=30.5
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHh
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.+++|-+..+..+.-...+ .+-+.++|++|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 4578877777666655554 36888999999999999999875
No 258
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.72 E-value=0.037 Score=48.00 Aligned_cols=45 Identities=20% Similarity=0.108 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHH
Q 043778 159 IIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQES 208 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 208 (405)
++.|.|++|+|||+||..+.....+ .=..++|++... +...+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCC--CHHHHHHH
Confidence 3678999999999999998664411 114577887654 34444444
No 259
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.71 E-value=0.026 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|.|++|+||||+|+.+....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998854
No 260
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.044 Score=48.72 Aligned_cols=36 Identities=25% Similarity=0.159 Sum_probs=28.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|..|+|||||++.+.... ....+.+++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~ 60 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII----LPDSGEVLFD 60 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEEC
Confidence 44689999999999999999999743 2345666653
No 261
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.71 E-value=0.023 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.+.|++|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998755
No 262
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.71 E-value=0.075 Score=47.56 Aligned_cols=53 Identities=26% Similarity=0.269 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccC----CCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043778 159 IIGLYGMGSVGKTTLLILINNKFLD----EPNYFDVVIWAVASKVVEIEKIQESIAK 211 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~~~----~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 211 (405)
+..|+|++|.||||++..+.....+ ....-...+-++...+.....++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7899999999999866555543201 0123344454554555556666666655
No 263
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.69 E-value=0.046 Score=56.59 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=38.9
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|-+..++.|.+.+..+. .+.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999988887764 4567899999999999999998754
No 264
>PLN02165 adenylate isopentenyltransferase
Probab=94.69 E-value=0.019 Score=54.34 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=25.2
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 152 LTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 152 L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.+....+|+|+|+.|+||||||..+....
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 345556699999999999999999998854
No 265
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.68 E-value=0.049 Score=49.24 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=36.2
Q ss_pred cccccchHHHHH---HHHHhhcC------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDK---LWRCLTEE------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++||-+....+ |++.|.++ .++-|..+|++|.|||-+|+.+.+..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 567897766543 45666654 57899999999999999999999955
No 266
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.081 Score=51.22 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK-VVEIEKIQESIAKKIGFF 216 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i~~~l~~~ 216 (405)
...+++++|+.|+||||++..+.... ........+..++... .....+-++...+.++.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~ 196 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP 196 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCc
Confidence 34699999999999999999998754 1111112455555322 223445555556666543
No 267
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.68 E-value=0.1 Score=47.25 Aligned_cols=53 Identities=11% Similarity=-0.006 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIG 214 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 214 (405)
.-+++.|+|.+|+|||+|+.++.... .+ .=..++|++..+. +.++.+.+ .+++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~--~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA--LK-QGKKVYVITTENT--SKSYLKQM-ESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH--Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCC
Confidence 46799999999999999999985432 11 2247888887654 45555553 3343
No 268
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.68 E-value=0.032 Score=47.32 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|+|+|..|+|||||+..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999865
No 269
>PRK13695 putative NTPase; Provisional
Probab=94.67 E-value=0.037 Score=47.65 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998865
No 270
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.67 E-value=0.027 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-|+++|.+|+|||||+..+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
No 271
>PRK01184 hypothetical protein; Provisional
Probab=94.66 E-value=0.027 Score=48.94 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.+|+|+|++|+||||+|+ +..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999987 444
No 272
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.66 E-value=0.039 Score=56.04 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
++..+|+|.|++|+||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 36789999999999999999999874
No 273
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.65 E-value=0.028 Score=50.01 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||++.+....
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999999743
No 274
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.027 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.-|.|.|.+|+|||||+..+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHH
Confidence 3578999999999999999986
No 275
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.61 E-value=0.029 Score=50.24 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~ 63 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD----RPTSGEVRV 63 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc----CCCceeEEE
Confidence 34699999999999999999999743 223455555
No 276
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.60 E-value=0.04 Score=48.69 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=33.7
Q ss_pred chHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 141 LESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 141 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
+...-...++.|. ...++.+.|++|.|||.||....-+. -....|+..+++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 3444455566666 45699999999999999999887654 2347788777764
No 277
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.59 E-value=0.033 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.+++.|+|-+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999887776
No 278
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.59 E-value=0.062 Score=47.36 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=26.8
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 147 KLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 147 ~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.+..+..++-++..|.|++|.||||++..+....
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 34444544555789999999999999999987755
No 279
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.59 E-value=0.053 Score=50.39 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|+++|++|+||||++..+....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999999999888887755
No 280
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.58 E-value=0.065 Score=50.59 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=28.2
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+++.+.. +...+|+|+|++|+|||||+..+....
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445544432 367899999999999999999988755
No 281
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.58 E-value=0.031 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358889999999999999999854
No 282
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.58 E-value=0.026 Score=50.36 Aligned_cols=24 Identities=42% Similarity=0.343 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-|+|+|++|+|||||+..+.++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 468899999999999999999754
No 283
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.58 E-value=0.029 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|+|.|.||+||||++..+..-.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~L 25 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGL 25 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHH
Confidence 589999999999999998877644
No 284
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.57 E-value=0.026 Score=52.42 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|+|.|..|+|||||++.+....
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998744
No 285
>PRK15453 phosphoribulokinase; Provisional
Probab=94.57 E-value=0.034 Score=51.35 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|.|.+|+||||+|+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999988644
No 286
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.56 E-value=0.033 Score=44.32 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043778 160 IGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~ 180 (405)
|+|+|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 287
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.56 E-value=0.03 Score=50.07 Aligned_cols=35 Identities=26% Similarity=0.138 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 62 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE----KPTRGKIRF 62 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 34699999999999999999999743 234566655
No 288
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.56 E-value=0.032 Score=48.32 Aligned_cols=35 Identities=29% Similarity=0.186 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+.... ....+.+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 59 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE----EPDSGSILI 59 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 44699999999999999999999743 233455554
No 289
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.54 E-value=0.032 Score=49.91 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=26.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-..++|+|++|+|||||...+..-. ..=.+.+++.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld----~pt~G~v~i~ 65 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD----KPTSGEVLIN 65 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc----CCCCceEEEC
Confidence 34589999999999999999888633 2233555554
No 290
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.54 E-value=0.051 Score=48.73 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|..|+|||||.+.+.... ....+.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~ 60 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL----KPTSGRATVA 60 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEEC
Confidence 34699999999999999999999743 3345666653
No 291
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.54 E-value=0.031 Score=48.89 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+.... ....+.+++
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~ 51 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL----RPQSGAVLI 51 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceeEEE
Confidence 34689999999999999999998743 223455554
No 292
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.54 E-value=0.032 Score=54.01 Aligned_cols=26 Identities=42% Similarity=0.512 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|+++|++|+||||++..+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998755
No 293
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=94.53 E-value=0.03 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|+|.|.|||||||+|..+..-.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~L 26 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAM 26 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Confidence 689999999999999999876644
No 294
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.52 E-value=0.047 Score=56.53 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=38.1
Q ss_pred cccccchHHHHHHHHHhhcC-----CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEE-----QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+..++++..++... ..+++.|+|++|+||||+++.+.+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56889888889988888653 33579999999999999999998744
No 295
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.51 E-value=0.045 Score=47.63 Aligned_cols=24 Identities=38% Similarity=0.322 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.+.|.|+|++|+||+||+..+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999884
No 296
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.50 E-value=0.079 Score=54.48 Aligned_cols=52 Identities=27% Similarity=0.272 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKI 213 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 213 (405)
.-+|..+.|++|+||||||..|.++. -| .++=|..|+.-+...+-..|...+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~av 376 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAV 376 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHH
Confidence 46799999999999999999999855 22 466677888877777777776665
No 297
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.49 E-value=0.14 Score=48.76 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=40.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEP----NYFDVVIWAVASKVVEIEKIQESIAKKIGF 215 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~----~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 215 (405)
...++.|.|.+|+|||+|+..+.... ... ..-..++|++....++...+ ..+++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 46799999999999999999887533 111 11235799998877787764 334555543
No 298
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.49 E-value=0.036 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999865
No 299
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.49 E-value=0.032 Score=54.75 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+.|+|+|..|+|||||+..+.+..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999999854
No 300
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.49 E-value=0.034 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.+.|++|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998743
No 301
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.48 E-value=0.034 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|+|+|.+|+|||||+..+....
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 302
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.47 E-value=2.1 Score=45.45 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCC
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVE--IEKIQESIAKKIGFF 216 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~i~~~l~~~ 216 (405)
..+|+++|+.|+||||.+..+.... ........+..++.. .+. ..+-++...+.++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTD-SFRIGALEQLRIYGRILGVP 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCC
Confidence 4799999999999999888887643 211111234444432 333 445566666666554
No 303
>PRK05973 replicative DNA helicase; Provisional
Probab=94.46 E-value=0.15 Score=46.26 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=33.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESI 209 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 209 (405)
.-.++.|.|.+|+|||+||.++.... - +. =..++|++...+ ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a-~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-M-KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-H-hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 44689999999999999999976644 1 12 235677765543 45555554
No 304
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.45 E-value=0.034 Score=42.08 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++.+.|.+|+||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998765
No 305
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.03 Score=52.07 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCC--CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPN--YFDVVIWAVASKVVEIEKIQESIAKKIGFFNESWESKTVQEKAVDIFN 234 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~--~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 234 (405)
-++|.++|++|.|||+|.+.+++.. .++. .+.....+.+ +-..+..+.++.- ......+-..|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEi----nshsLFSKWFsES--------gKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEI----NSHSLFSKWFSES--------GKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEE----ehhHHHHHHHhhh--------hhHHHHHHHHHHH
Confidence 5789999999999999999999977 6542 2322222322 2334444443332 2234555566666
Q ss_pred HHcccch
Q 043778 235 ILSKKKY 241 (405)
Q Consensus 235 ~L~~kr~ 241 (405)
.+.++..
T Consensus 244 Lv~d~~~ 250 (423)
T KOG0744|consen 244 LVEDRGN 250 (423)
T ss_pred HHhCCCc
Confidence 6666554
No 306
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.056 Score=53.59 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=34.8
Q ss_pred ccccch---HHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 137 TIVGLE---SIFDKLWRCLTEE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 137 ~~vGr~---~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++-|-+ .+++++++.|.++ =++-|.++|++|.|||-||++|....
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345655 4567778888764 25678999999999999999998755
No 307
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.43 E-value=0.036 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999854
No 308
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.41 E-value=0.035 Score=48.01 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.-.+++|+|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 446999999999999999999864
No 309
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.40 E-value=0.035 Score=48.04 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44699999999999999999998743
No 310
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.39 E-value=0.034 Score=50.77 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|+.|+|||||.+.++.-. ..-.+.+++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l----~p~~G~V~l~ 62 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL----KPKSGEVLLD 62 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC----CCCCCEEEEC
Confidence 45799999999999999999999743 2334566653
No 311
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.39 E-value=0.059 Score=55.98 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=39.3
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+.....|.+++..+. .+.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 457999999999999988764 3678899999999999999998755
No 312
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=94.38 E-value=0.034 Score=51.41 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeC
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVAS 197 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs 197 (405)
++|+|.|.||+||||++..+.... ... ..++-++..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~L-a~~---GrVLliD~D 38 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAY-SND---HRVLVIGCD 38 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc-CCC---CEEEEEeEc
Confidence 589999999999999999998865 222 235555554
No 313
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.38 E-value=0.033 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998874
No 314
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.38 E-value=0.035 Score=49.51 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~ 61 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL----TPSRGQVRI 61 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 34699999999999999999998743 234566665
No 315
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.064 Score=54.10 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=38.5
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|-+.....|.+.+..+. .+.+.++|+.|+||||+|+.+....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999998764 4567889999999999999987743
No 316
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.37 E-value=0.051 Score=51.37 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHH
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQE 207 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 207 (405)
+++.+.|.||+||||+|-...-...+ +. ..++-++.....+..+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G--~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RG--KRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TT--S-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CC--CCeeEeecCCCccHHHHhC
Confidence 57899999999999998766543312 22 2355556555555555443
No 317
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.37 E-value=0.035 Score=49.74 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 61 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL----RPTSGTAYI 61 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 34599999999999999999999743 233455554
No 318
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.035 Score=50.38 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999743
No 319
>PRK02496 adk adenylate kinase; Provisional
Probab=94.36 E-value=0.04 Score=47.90 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|.|++|+||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998744
No 320
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.36 E-value=0.04 Score=52.35 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+..+|+++|++|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998765
No 321
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.36 E-value=0.039 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998855
No 322
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.36 E-value=0.031 Score=46.89 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=18.4
Q ss_pred EEcCCCCcHHHHHHHHHhhc
Q 043778 162 LYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 162 I~G~~GiGKTtLA~~v~~~~ 181 (405)
|+|++|+||||+|+.+....
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999855
No 323
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.36 E-value=0.043 Score=46.80 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCC
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEPNYF 188 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F 188 (405)
.-|.++||.|+||||+.+.+.+.. .-+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L---~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL---NLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc---CCCc
Confidence 347889999999999999999855 4455
No 324
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.35 E-value=0.036 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998744
No 325
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.35 E-value=0.073 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..++.++|++|+||||++..+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 326
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.35 E-value=0.035 Score=50.60 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 61 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV----EPSSGSILL 61 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc----CCCccEEEE
Confidence 34699999999999999999998743 223455554
No 327
>PRK13768 GTPase; Provisional
Probab=94.35 E-value=0.039 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.|.|++|+||||++..+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578999999999999998887655
No 328
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.34 E-value=0.04 Score=47.36 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++.++|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999988754
No 329
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.32 E-value=0.072 Score=46.48 Aligned_cols=37 Identities=24% Similarity=0.093 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 144 IFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 144 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+...++...... -..+.|+|+.|+|||||++.+....
T Consensus 13 ~~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 13 LQAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444455544443 4689999999999999999988743
No 330
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.32 E-value=0.036 Score=49.67 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+.... ....+.+++
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 63 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE----RPTSGEVLV 63 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 34689999999999999999999743 223455554
No 331
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.32 E-value=0.052 Score=57.92 Aligned_cols=46 Identities=28% Similarity=0.268 Sum_probs=36.4
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++.|.+..++.+.+.+.- ...+-|.++|++|+|||+||+.+.+..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4578999888888776531 134678899999999999999999854
No 332
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.32 E-value=0.036 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|++.|.||+||||++..+....
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~L 24 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAF 24 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHH
Confidence 68889999999999888876544
No 333
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.31 E-value=0.037 Score=49.34 Aligned_cols=25 Identities=40% Similarity=0.473 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 334
>PTZ00035 Rad51 protein; Provisional
Probab=94.30 E-value=0.25 Score=47.37 Aligned_cols=57 Identities=25% Similarity=0.263 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC----CCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEP----NYFDVVIWAVASKVVEIEKIQESIAKKIG 214 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~----~~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 214 (405)
.-.++.|+|.+|+|||+|+..+.-.. ... ..=..++|++....|++..+ ..+++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 46799999999999999999887543 211 11235679988777877774 34455554
No 335
>PRK04328 hypothetical protein; Provisional
Probab=94.29 E-value=0.12 Score=47.49 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIG 214 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 214 (405)
.-+++.|.|.+|+|||+|+.++.... ...-...+|++..++ +.++.+ .+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~--~~~i~~-~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH--PVQVRR-NMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC--HHHHHH-HHHHcC
Confidence 46799999999999999999865532 122356788887664 334333 344454
No 336
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.29 E-value=0.037 Score=50.37 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34699999999999999999999743
No 337
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.053 Score=56.85 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=33.3
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHh
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
+.++||+.++.++++-|....-.--.++|.+|||||+++.-+..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHH
Confidence 45799999999999999864222334689999999996555443
No 338
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.28 E-value=0.14 Score=49.14 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=42.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEP----NYFDVVIWAVASKVVEIEKIQESIAKKIGFF 216 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~----~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~ 216 (405)
.-+++-|.|.+|+|||+|+..+.-.. ... ..-..++|++.-..|++..+.. ++..++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~-qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTT-QLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHH-hcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 45688899999999999999875322 211 1124789999999899888765 45666543
No 339
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.27 E-value=0.056 Score=53.22 Aligned_cols=46 Identities=24% Similarity=0.164 Sum_probs=34.3
Q ss_pred cccccchHHHHHHHHHhhc-------C---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------E---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|-+..++.+...+.+ . ...-+.++|++|+|||+||+.+....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578988887777544421 0 23568999999999999999998744
No 340
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.27 E-value=0.04 Score=49.17 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
. .+++|+|+.|+|||||++.+.... ....+.+++
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 56 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGLE----KPDGGTIVL 56 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 5 899999999999999999999743 223455555
No 341
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.27 E-value=0.15 Score=48.36 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEP----NYFDVVIWAVASKVVEIEKIQESIAKKIGF 215 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~----~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 215 (405)
.-+++-|+|++|+|||+|+..+.-.. ... ..=..++|++.-..|++..+.+ ++..++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45789999999999999998866422 211 1124789999888888888764 4566654
No 342
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.27 E-value=0.067 Score=46.01 Aligned_cols=35 Identities=31% Similarity=0.279 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||.+.+.... ....+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~ 59 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKV 59 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEE
Confidence 34689999999999999999998743 234566655
No 343
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.27 E-value=0.035 Score=49.44 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 159 IIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
+++|+|+.|+|||||++.+..-. ....+.+++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~ 59 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT----PPSSGTIRID 59 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC----CCCccEEEEC
Confidence 89999999999999999999743 2345666653
No 344
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.052 Score=56.57 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=35.1
Q ss_pred cccccchH---HHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLES---IFDKLWRCLTEE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~---~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.|-++ +++++++.|.++ -++=+.++|++|.|||-||++++...
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 45677665 455666667653 36678999999999999999999855
No 345
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=94.26 E-value=0.038 Score=52.04 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|+|+|.||+||||+|..+..-.
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~L 24 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMM 24 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999988755
No 346
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.26 E-value=0.039 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998763
No 347
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.26 E-value=0.036 Score=49.45 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||++.+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34699999999999999999998743
No 348
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.26 E-value=0.041 Score=46.07 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..+|+++|..|+|||||...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998763
No 349
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.25 E-value=0.04 Score=48.46 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34599999999999999999999844
No 350
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.25 E-value=0.039 Score=49.19 Aligned_cols=35 Identities=29% Similarity=0.177 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||.+.+.... ....+.+++
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 60 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE----LPTSGTIRV 60 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 44689999999999999999999743 223455555
No 351
>PRK14528 adenylate kinase; Provisional
Probab=94.25 E-value=0.042 Score=47.95 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998754
No 352
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.25 E-value=0.039 Score=49.74 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||++.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3469999999999999999999873
No 353
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.057 Score=57.78 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=39.4
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++||.+..++.|.+.+..+.+ +.+.++|+.|+||||+|+.+.+..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999987654 568899999999999999998755
No 354
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.25 E-value=0.039 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|+|.|.||+||||+|..+....
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~l 24 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVAL 24 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 78999999999999888877654
No 355
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.25 E-value=0.13 Score=46.07 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.-.+|+|+|++|+|||||.+.+..
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999987
No 356
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.24 E-value=0.12 Score=49.49 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPN----YFDVVIWAVASKVVEIEKIQESIAKKIGF 215 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 215 (405)
.-.++-|.|.+|+|||+|+..+.-.. .... .-..++|++.-..|++..+. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 46788999999999999998877533 2111 11368999999989888764 45666654
No 357
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.24 E-value=0.048 Score=47.39 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....+|.|.|.+|+||||+|+.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999854
No 358
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.23 E-value=0.062 Score=50.90 Aligned_cols=44 Identities=25% Similarity=0.235 Sum_probs=33.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEI 202 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 202 (405)
.-+++-|.|++|+||||||.++.... ...=..++|++.-..++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHH
Confidence 45799999999999999999987654 223346778877665555
No 359
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.23 E-value=0.094 Score=50.13 Aligned_cols=73 Identities=22% Similarity=0.197 Sum_probs=43.8
Q ss_pred cccccchHHHH---HHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeC----CCCCHHHHH
Q 043778 136 LTIVGLESIFD---KLWRCLTEE--QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVAS----KVVEIEKIQ 206 (405)
Q Consensus 136 ~~~vGr~~~~~---~l~~~L~~~--~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs----~~~~~~~l~ 206 (405)
..+||....++ -+++++..+ .-+.|.+.|++|.|||+||..+.+.. .....| +. ++-| ....-.+++
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL-G~~~PF--~~-isgSEiyS~e~kKTE~L 99 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL-GEDVPF--VS-ISGSEIYSSEVKKTEAL 99 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC-TTTS-E--EE-EEGGGG-BTTC-HHHHH
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh-CCCCCe--eE-cccceeeecccCchHHH
Confidence 56899765544 345666655 46789999999999999999999976 433333 22 2223 334455655
Q ss_pred HHHHHH
Q 043778 207 ESIAKK 212 (405)
Q Consensus 207 ~~i~~~ 212 (405)
.+.++.
T Consensus 100 ~qa~Rr 105 (398)
T PF06068_consen 100 TQAFRR 105 (398)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555443
No 360
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.22 E-value=0.042 Score=49.17 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998744
No 361
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.22 E-value=0.057 Score=49.91 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHH
Q 043778 144 IFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQ 206 (405)
Q Consensus 144 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 206 (405)
-++++...+..+ .-|.+.|++|+|||+||+.+.... ... .+.++.....+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CCC---EEEEeCCccCCHHHHh
Confidence 344455555433 355689999999999999998733 222 3344445555555544
No 362
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.21 E-value=0.039 Score=50.07 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+.... ....+.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~ 60 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY----VAQEGQISV 60 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc----CCCceEEEE
Confidence 44699999999999999999999743 233466655
No 363
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.18 E-value=0.048 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-+..++|||++|.|||.+|+.+++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999999965
No 364
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.18 E-value=0.041 Score=49.63 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~----~p~~G~i~~ 69 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD----DGSSGEVSL 69 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCeeEEE
Confidence 44699999999999999999999743 233455554
No 365
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.18 E-value=0.041 Score=48.77 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+.... ....+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 59 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI----KESSGSILL 59 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 34699999999999999999999743 233455554
No 366
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.18 E-value=0.07 Score=47.08 Aligned_cols=36 Identities=36% Similarity=0.327 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|..|+|||||.+.+.... ....+.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~ 61 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL----NPEKGEILFE 61 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeeEEEC
Confidence 45699999999999999999998743 2335666653
No 367
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.17 E-value=0.04 Score=46.47 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043778 160 IGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~ 180 (405)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998874
No 368
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.17 E-value=0.039 Score=50.33 Aligned_cols=26 Identities=35% Similarity=0.323 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+++|||.+|+|||||++.+..-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 45699999999999999999999743
No 369
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.16 E-value=0.088 Score=48.76 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=44.8
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEE
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVI 192 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~ 192 (405)
.+++|-+..+.-|.+.+..........+|++|.|||+-|....... --.+.|.+++
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rv 91 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRV 91 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccch
Confidence 4578988889999988888778889999999999999988887755 3345665543
No 370
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.16 E-value=0.04 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|++.|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999988754
No 371
>PRK09183 transposase/IS protein; Provisional
Probab=94.15 E-value=0.041 Score=50.75 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+.|+|++|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467799999999999999998754
No 372
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.063 Score=51.23 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-+-|..+|++|.|||-||++|+...
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 45678899999999999999999954
No 373
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.14 E-value=0.041 Score=50.05 Aligned_cols=26 Identities=38% Similarity=0.424 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999999743
No 374
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.14 E-value=0.076 Score=53.83 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=40.4
Q ss_pred cccccchHHHHHHHHHhhcC-----CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 136 LTIVGLESIFDKLWRCLTEE-----QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.+++-...-++++..||... ..+++.+.|++|+||||.++.+.+.. -|+.+-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEec
Confidence 34555566788888888642 35689999999999999999999854 35555565
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.071 Score=45.19 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
--+.+.|++|+||+||.+.+|.++ ... .+.+||.
T Consensus 38 ECvvL~G~SG~GKStllr~LYaNY-~~d---~G~I~v~ 71 (235)
T COG4778 38 ECVVLHGPSGSGKSTLLRSLYANY-LPD---EGQILVR 71 (235)
T ss_pred cEEEeeCCCCCcHHHHHHHHHhcc-CCC---CceEEEE
Confidence 357789999999999999999977 433 3678875
No 376
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.13 E-value=0.11 Score=46.56 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=30.1
Q ss_pred ccccccc-hHHHHHHHHHhhc-C--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 135 ALTIVGL-ESIFDKLWRCLTE-E--QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 135 ~~~~vGr-~~~~~~l~~~L~~-~--~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.++|- ....-.....+.+ + ....+-|+|..|+|||.|.+.+++..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3455674 3333334444433 2 23468899999999999999999865
No 377
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.13 E-value=0.068 Score=45.59 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+...|+|+|.+|+|||||...+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4456999999999999999999874
No 378
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.12 E-value=0.043 Score=49.23 Aligned_cols=35 Identities=31% Similarity=0.246 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 59 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL----PPRSGSIRF 59 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 44699999999999999999998743 234456655
No 379
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.12 E-value=0.041 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34699999999999999999999743
No 380
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.11 E-value=0.043 Score=49.20 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+.... ....+.+++
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~ 64 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD----NPTSGEVLF 64 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 44699999999999999999999743 233556655
No 381
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.09 E-value=0.072 Score=55.73 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=38.8
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|-+..++.|.+.+..+. .+.+.++|+.|+||||+|+.+....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999998999999998764 5677899999999999999987643
No 382
>PRK08116 hypothetical protein; Validated
Probab=94.09 E-value=0.046 Score=50.71 Aligned_cols=47 Identities=23% Similarity=0.178 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKI 213 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 213 (405)
..+.++|.+|+|||.||..+++.. ..+-..+++++ ..+++..+...+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l---~~~~~~v~~~~------~~~ll~~i~~~~ 161 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL---IEKGVPVIFVN------FPQLLNRIKSTY 161 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEE------HHHHHHHHHHHH
Confidence 458899999999999999999976 22233556665 334455554443
No 383
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.08 E-value=0.083 Score=48.86 Aligned_cols=42 Identities=33% Similarity=0.355 Sum_probs=29.6
Q ss_pred ccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 139 VGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 139 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.|......+.+..+....-.+|.|.|..|+||||++..+.+.
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 455444444444444444568999999999999999988763
No 384
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.07 E-value=5 Score=39.37 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCH--HHHHHHHHHHhCCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEI--EKIQESIAKKIGFF 216 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~--~~l~~~i~~~l~~~ 216 (405)
.+.||-.+|.-|+||||-+-.+.+.. + + .....-+...+.+.+ -+=++.+..+++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~l-k--k-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYL-K--K-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHH-H--H-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 47899999999999999888888766 3 2 333333333444443 44477888888765
No 385
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.04 E-value=0.098 Score=48.27 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
.-+++.|.|.+|+|||+||.++.... - ..=..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-A--SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H--hCCCcEEEEEecC
Confidence 56799999999999999999975533 1 1124678888754
No 386
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.04 E-value=0.048 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|+|.|.||+||||++..+....
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~l 26 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAF 26 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999988887755
No 387
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.02 E-value=0.74 Score=42.24 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=32.4
Q ss_pred ccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHh
Q 043778 137 TIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 137 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.+.++++....+......+...-..++|++|.||.|.+..+.+
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~ 56 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLR 56 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHH
Confidence 3567777777777766656677788999999999997666554
No 388
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.02 E-value=0.084 Score=47.53 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=31.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH-hhccCCCCCCCEEEEEEeCCCCCHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILIN-NKFLDEPNYFDVVIWAVASKVVEIEKIQES 208 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~-~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 208 (405)
.-+++.|.|.+|+|||+|+.++. +.. +. .=+.++|++..+++ .++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~-~~--~ge~vlyvs~ee~~--~~l~~~ 66 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL-KN--FGEKVLYVSFEEPP--EELIEN 66 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-HH--HT--EEEEESSS-H--HHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh-hh--cCCcEEEEEecCCH--HHHHHH
Confidence 56799999999999999999855 433 21 01357888876543 444444
No 389
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.01 E-value=0.041 Score=45.76 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043778 160 IGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~ 180 (405)
|+|+|.+|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999874
No 390
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.046 Score=49.49 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||++.+....
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999998744
No 391
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=94.00 E-value=0.046 Score=46.01 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043778 160 IGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~ 180 (405)
|.|+|.+|+|||||+..+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
No 392
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.99 E-value=0.051 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.+|+|+|+.|+||||+++.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999873
No 393
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.98 E-value=0.07 Score=50.62 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=33.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEI 202 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 202 (405)
.-+++-|.|++|+||||||.++.-.. ...-..++|++.-..+++
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHH
Confidence 45789999999999999999987644 233356788887666665
No 394
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.047 Score=49.46 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 68 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD----TPTSGDVIF 68 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 34589999999999999999999743 234566655
No 395
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.97 E-value=0.046 Score=49.22 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+....
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999999743
No 396
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.97 E-value=0.048 Score=49.35 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-.+++|+|..|+|||||++.+..-.
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999743
No 397
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.96 E-value=0.046 Score=46.02 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|+++|.+|+|||||...+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998643
No 398
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.96 E-value=0.047 Score=49.95 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-.+++|+|..|+|||||.+.+....
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998743
No 399
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.95 E-value=0.047 Score=50.25 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999999743
No 400
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.95 E-value=0.048 Score=48.28 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|..|+|||||.+.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999999844
No 401
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.95 E-value=0.049 Score=45.65 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998763
No 402
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=93.94 E-value=0.052 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.|+|+|.|||||||.+..+.-..
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaal 24 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAAL 24 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCcccChhhhHHHHHH
Confidence 469999999999999999886644
No 403
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.94 E-value=0.049 Score=48.53 Aligned_cols=35 Identities=26% Similarity=0.199 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+.... ....+.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~v~~ 59 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE----EPTSGRIYI 59 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 34589999999999999999999843 233455555
No 404
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.94 E-value=0.046 Score=45.15 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-|+++|.+|+|||||...+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 405
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.94 E-value=0.049 Score=48.21 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
-.+++|+|+.|+|||||.+.+.... ....+.+++
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 57 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE----KFDSGQVYL 57 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEE
Confidence 4689999999999999999999743 233455555
No 406
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.94 E-value=0.16 Score=45.93 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=33.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIG 214 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 214 (405)
.-.++.|.|.+|+||||||.++.... - +.. ..++|++... +..++++.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~-~~g-~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-L-QNG-YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H-hCC-CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 34599999999999999986554422 1 111 3456776333 456666665 4454
No 407
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.93 E-value=0.046 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..|.+.|.+|+||||+|+++....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 357789999999999999998755
No 408
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=93.93 E-value=0.045 Score=47.95 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|+|-|+.|+||||++..+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998743
No 409
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.93 E-value=0.93 Score=41.96 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 145 FDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 145 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+.++.+.|..++.+. .++|.||+||+||++.+..-
T Consensus 20 i~ri~RvL~~~~Gh~-LLvG~~GsGr~sl~rLaa~i 54 (268)
T PF12780_consen 20 IARISRVLSQPRGHA-LLVGVGGSGRQSLARLAAFI 54 (268)
T ss_dssp HHHHHHHHCSTTEEE-EEECTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCe-EEecCCCccHHHHHHHHHHH
Confidence 344455565555444 59999999999999988763
No 410
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.92 E-value=0.049 Score=49.04 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+.... ....+.+++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 66 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI----SPTSGTLLF 66 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc----CCCCCeEEE
Confidence 44699999999999999999999743 223455554
No 411
>PRK06526 transposase; Provisional
Probab=93.92 E-value=0.045 Score=50.26 Aligned_cols=26 Identities=23% Similarity=0.177 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...-+.++|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998755
No 412
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.90 E-value=0.049 Score=45.53 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043778 160 IGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~ 180 (405)
|.|+|++|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998763
No 413
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.90 E-value=0.051 Score=47.67 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|..|+|||||.+.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999973
No 414
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.89 E-value=0.089 Score=54.02 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=39.3
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|-+..++.|...+..+. .+.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999998764 4578899999999999999998754
No 415
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.88 E-value=0.1 Score=47.56 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
...+.++|.+|+|||+||..+.+.. . ..-..+++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l-~--~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL-L--LRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEE
Confidence 4578899999999999999999976 2 2223555664
No 416
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.88 E-value=0.098 Score=50.02 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=37.1
Q ss_pred cccccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|......++.+.+.. ....-|.|+|..|+||+++|+.++...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 4689998888888887754 234568899999999999999998743
No 417
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.077 Score=53.52 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=36.4
Q ss_pred cccccchHHHHHHHHHhhc---C---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE---E---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~---~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++=|.+..+.+|.+++.. + .++-|.++|++|.|||.||+.+.++.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 3455788888887777642 1 46778999999999999999999865
No 418
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.87 E-value=0.058 Score=52.57 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+-+|+|.|..|+|||||++.+..-.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999997644
No 419
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.87 E-value=0.24 Score=48.95 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.+|.++|.+|+||||.|..+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999988887643
No 420
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.87 E-value=0.047 Score=49.51 Aligned_cols=35 Identities=31% Similarity=0.285 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+.... ....+.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 59 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL----RPTSGSVLF 59 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC----CCCCceEEE
Confidence 34689999999999999999999743 233455555
No 421
>PRK07429 phosphoribulokinase; Provisional
Probab=93.86 E-value=0.057 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.-+|+|.|.+|+|||||++.+....
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 56799999999999999999999754
No 422
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.86 E-value=0.053 Score=45.18 Aligned_cols=26 Identities=42% Similarity=0.571 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44699999999999999999998744
No 423
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=93.84 E-value=0.3 Score=46.50 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhccCCC--CCC---CEEEEEEeCCCCCHHHHHHHHHHHh
Q 043778 142 ESIFDKLWRCLTE---EQVGIIGLYGMGSVGKTTLLILINNKFLDEP--NYF---DVVIWAVASKVVEIEKIQESIAKKI 213 (405)
Q Consensus 142 ~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~--~~F---~~~~wv~vs~~~~~~~l~~~i~~~l 213 (405)
+.-.+.|.+.|.+ +...+|+|.|.=|+||||+.+.+.+.. +.. ..+ ..-.|-.-...--...++..|..++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L-~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL-KEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH-hcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 3455667777765 367899999999999999999999876 332 112 1222333332333455666666666
Q ss_pred CC
Q 043778 214 GF 215 (405)
Q Consensus 214 ~~ 215 (405)
..
T Consensus 81 ~~ 82 (325)
T PF07693_consen 81 EK 82 (325)
T ss_pred HH
Confidence 43
No 424
>PRK12338 hypothetical protein; Provisional
Probab=93.83 E-value=0.06 Score=50.81 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.+|.|.|.+|+||||+|+.+....
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 5689999999999999999999854
No 425
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.83 E-value=0.34 Score=42.22 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=27.6
Q ss_pred HHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 147 KLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 147 ~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.+.+..+.+ +.+.++|+.|+||||+|+.+.+..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556655554 689999999999999999988754
No 426
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.83 E-value=0.056 Score=46.52 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|..|+|||||.+.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34699999999999999999999743
No 427
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.83 E-value=0.052 Score=49.47 Aligned_cols=36 Identities=22% Similarity=0.110 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|+.|+|||||++.+.... ....+.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~ 62 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE----MPRSGTLNIA 62 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEEC
Confidence 34689999999999999999999743 2234666653
No 428
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.82 E-value=0.053 Score=45.00 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|.++|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998754
No 429
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.81 E-value=0.11 Score=44.29 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=25.0
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 153 TEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 153 ~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+..+|=+.|.+|+||||+|..++...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 34467799999999999999999999865
No 430
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.81 E-value=0.095 Score=54.12 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=39.0
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|-+...+.|.+.+..+.+ +.+.++|+.|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999899999999887654 577899999999999999987753
No 431
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.79 E-value=0.098 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....|.++|++|+||||+++.+....
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 56689999999999999999999844
No 432
>PRK10908 cell division protein FtsE; Provisional
Probab=93.78 E-value=0.054 Score=48.63 Aligned_cols=35 Identities=31% Similarity=0.247 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+.... ....+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 61 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE----RPSAGKIWF 61 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 45699999999999999999999743 223466655
No 433
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=93.77 E-value=0.054 Score=45.81 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043778 160 IGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~ 180 (405)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999887653
No 434
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.77 E-value=0.061 Score=43.04 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|.+.|.||+||||++..+....
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l 23 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYL 23 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998755
No 435
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=93.76 E-value=0.049 Score=54.74 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|||.+|+||||||+.+..-.
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999743
No 436
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.76 E-value=0.057 Score=46.16 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999999854
No 437
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.75 E-value=0.054 Score=48.95 Aligned_cols=35 Identities=31% Similarity=0.287 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||.+.+.... ....+.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 59 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV----KPDSGKILL 59 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 34689999999999999999999743 233466665
No 438
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.75 E-value=0.056 Score=47.58 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+.... ....+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 59 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL----RPDSGEVRW 59 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEE
Confidence 44699999999999999999999843 233456655
No 439
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.74 E-value=0.2 Score=48.01 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=44.0
Q ss_pred ccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043778 137 TIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESI 209 (405)
Q Consensus 137 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 209 (405)
.++|.++....+...+..+ +-+.+.|.+|+|||+||+.+.... ...| .++.........++....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~~~---~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GLPF---VRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecCCCCCHHHhcCch
Confidence 3788777777766665543 357789999999999999999854 3333 344445555555554433
No 440
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=93.74 E-value=0.054 Score=45.86 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.-|+|+|.+|+|||||+..+..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4588999999999999999865
No 441
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.74 E-value=0.056 Score=47.98 Aligned_cols=36 Identities=25% Similarity=0.146 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|+.|+|||||.+.+.... ....+.+++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~ 60 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI----KPDSGEITFD 60 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc----CCCceEEEEC
Confidence 44699999999999999999999743 2335666653
No 442
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.74 E-value=0.053 Score=47.81 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 043778 159 IIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~ 179 (405)
+++|+|+.|+|||||++.++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999975
No 443
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.74 E-value=0.053 Score=49.35 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+.... . .....+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~-~~~~~G~i~~ 61 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHP-S-YEVTSGTILF 61 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCCcceEEE
Confidence 34699999999999999999999742 0 0233455555
No 444
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.73 E-value=0.054 Score=48.97 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|.|+.|+|||||++.+....
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999844
No 445
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.73 E-value=0.098 Score=48.92 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+-+|.|.|.+|+||||+|..+.+..
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999854
No 446
>PRK09354 recA recombinase A; Provisional
Probab=93.72 E-value=0.15 Score=48.80 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEI 202 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 202 (405)
.-+++-|+|++|+||||||.++.... ...=..++|++.-..++.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHH
Confidence 45799999999999999999987654 233357789987776665
No 447
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=93.72 E-value=0.066 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..|+|.|+.|+|||||.+.+.+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999999854
No 448
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.72 E-value=0.057 Score=47.97 Aligned_cols=35 Identities=31% Similarity=0.178 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||.+.+.... . ...+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~-~---~~~G~i~~ 61 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL-P---PAAGTIKL 61 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C---CCCceEEE
Confidence 45699999999999999999999843 2 23455554
No 449
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.72 E-value=0.056 Score=48.10 Aligned_cols=35 Identities=26% Similarity=0.145 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 59 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE----EPDSGTIII 59 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 34689999999999999999999743 223455554
No 450
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.71 E-value=0.056 Score=48.33 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|..|+|||||.+.+..-. ....+.+++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~ 65 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL----EPDAGFATVD 65 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc----CCCCceEEEC
Confidence 34689999999999999999999743 3345666663
No 451
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.70 E-value=0.052 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44699999999999999999999844
No 452
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.70 E-value=0.059 Score=46.58 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|.|+.|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999999743
No 453
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.69 E-value=0.11 Score=53.56 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=38.7
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+...+.|.+.+..+. .+.+.++|+.|+||||+|+.+....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999988764 5678889999999999999987643
No 454
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.057 Score=49.22 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+.... ....+.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 60 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI----EPTSGEIFI 60 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEE
Confidence 34689999999999999999999743 223455555
No 455
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.69 E-value=0.076 Score=37.10 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 043778 159 IIGLYGMGSVGKTTLLILIN 178 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~ 178 (405)
+..|.|..|+|||||.-++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999987654
No 456
>PRK14974 cell division protein FtsY; Provisional
Probab=93.69 E-value=0.064 Score=51.27 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=33.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCH--HHHHHHHHHHhCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEI--EKIQESIAKKIGF 215 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~--~~l~~~i~~~l~~ 215 (405)
++.+|.++|++|+||||++..+.... .. ..+ .++.+. .+.+.. .+-+......++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-KK-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-HH-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCC
Confidence 46899999999999999887777654 21 223 233333 233322 2334555555554
No 457
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.69 E-value=0.056 Score=49.23 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||++.+.... ....+.+++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 62 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI----DPTEGSILI 62 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 34689999999999999999999743 233455555
No 458
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.68 E-value=0.06 Score=46.66 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||.+.+.... ....+.+++
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~ 58 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILL 58 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 44699999999999999999999743 234455554
No 459
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=93.68 E-value=0.061 Score=45.27 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043778 160 IGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~ 180 (405)
|.++|.+|+|||||...+.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999998874
No 460
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.68 E-value=0.057 Score=48.52 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|..|+|||||.+.+.... ....+.+++.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~ 68 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY----LPDSGRILVR 68 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEEe
Confidence 34699999999999999999999744 2345666654
No 461
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.056 Score=49.49 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|..|+|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999999743
No 462
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=93.67 E-value=0.057 Score=48.09 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 043778 159 IIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~ 179 (405)
+|+|+|++|+||||+|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999999865
No 463
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=93.65 E-value=0.052 Score=44.68 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-|+|+|.+|+|||||...+.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999998764
No 464
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.65 E-value=0.059 Score=48.07 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.++... ....+.+++
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 57 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI----EPASGSIKV 57 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 45699999999999999999999744 223466665
No 465
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.65 E-value=0.058 Score=45.36 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 043778 159 IIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~ 179 (405)
-|.|+|.+|+|||||+..+.+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999988775
No 466
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.64 E-value=0.063 Score=45.74 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||.+.+.... ....+.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~ 59 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILV 59 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEE
Confidence 34699999999999999999998743 234555555
No 467
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.64 E-value=0.059 Score=49.47 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|..|+|||||.+.+..-
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4469999999999999999999873
No 468
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.63 E-value=0.059 Score=49.69 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+....
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999999743
No 469
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.62 E-value=0.1 Score=53.71 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=38.5
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|-+..++.|.+.+..+. ...+.++|+.|+||||+|+.+.+..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 457898888888888887765 5788899999999999999998755
No 470
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.61 E-value=0.095 Score=48.63 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|+.|.|||||.+.+..-. ....+.+++.
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~ 69 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIE----KVKSGEIFYN 69 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEEC
Confidence 44699999999999999999999743 2345666653
No 471
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.61 E-value=0.11 Score=56.30 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=36.4
Q ss_pred cccccchHHHHHHHHHhhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------E--QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|-+..++.+...+.. + ...++.++|+.|+|||+||+.+.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578988888888877652 1 23578899999999999999999744
No 472
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.61 E-value=0.059 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.-.+++|+|+.|+|||||++.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999999975
No 473
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.60 E-value=0.28 Score=51.00 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=38.9
Q ss_pred cccccchHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQV-GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+...+.|.+.+..+.+ +.+.++|+.|+||||+|+.+....
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999987654 568899999999999999877643
No 474
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.60 E-value=0.059 Score=48.88 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||++.+.... ....+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 61 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY----VPENGRVLV 61 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEE
Confidence 45699999999999999999999743 223455554
No 475
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.59 E-value=0.1 Score=47.98 Aligned_cols=38 Identities=32% Similarity=0.260 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEe
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVA 196 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~v 196 (405)
+..-+.++|.+|+|||.||.++.+.. - ..=-.++++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~--~~g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L--KAGISVLFITA 141 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H--HcCCeEEEEEH
Confidence 56678999999999999999999977 2 22235566654
No 476
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.59 E-value=0.062 Score=48.90 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
-.+++|+|+.|.|||||.+.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 37999999999999999999997
No 477
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.57 E-value=0.13 Score=50.53 Aligned_cols=47 Identities=21% Similarity=0.115 Sum_probs=35.2
Q ss_pred ccccccchHHHHHHHHHhh-------c---C--------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 135 ALTIVGLESIFDKLWRCLT-------E---E--------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 135 ~~~~vGr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...++|-+..++.+...+. . . ....|.++|++|+|||+||+.+....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 3567898888887765441 1 0 12579999999999999999999744
No 478
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.56 E-value=0.061 Score=49.56 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|..|+|||||.+.+....
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999999743
No 479
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.56 E-value=0.061 Score=49.37 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|..|+|||||++.+....
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999743
No 480
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=93.55 E-value=0.066 Score=49.14 Aligned_cols=25 Identities=20% Similarity=0.241 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+..+.+|+|+.|+|||||+.+++.-
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999853
No 481
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.55 E-value=0.062 Score=49.15 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC--CEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF--DVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F--~~~~wv 194 (405)
.-.+++|+|..|+|||||++.+..-. .....+ .+.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMN-DLVPGVRIEGKVLF 65 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC-CCCcCCCCceEEEE
Confidence 44699999999999999999998743 211112 566666
No 482
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=93.54 E-value=0.059 Score=46.88 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...|+|+|++|+|||||...+.+.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 445699999999999999998863
No 483
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.54 E-value=0.13 Score=42.70 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC--CEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF--DVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F--~~~~wv~ 195 (405)
.--|+.+.|++|+||+||-..+.... ...| .+.+|+.
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~L---a~~F~~~G~~~l~ 65 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGAL---AGQFSCTGELWLN 65 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhc---ccCcceeeEEEEC
Confidence 34589999999999999998888866 4555 5678885
No 484
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.094 Score=47.26 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|+.|+|||||.+.+.... ....+.+++.
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~ 63 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY----DPQKGQILID 63 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEEC
Confidence 34689999999999999999998743 2345666663
No 485
>PRK06851 hypothetical protein; Provisional
Probab=93.53 E-value=0.83 Score=44.17 Aligned_cols=56 Identities=23% Similarity=0.185 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCC
Q 043778 138 IVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKV 199 (405)
Q Consensus 138 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~ 199 (405)
.-|.-.-.+.+. .+--+++.|.|++|+|||||++.++... . ..-++..++-|-+.+
T Consensus 199 p~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a-~-~~G~~v~~~hC~~dP 254 (367)
T PRK06851 199 PKGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA-E-ERGFDVEVYHCGFDP 254 (367)
T ss_pred CCcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH-H-hCCCeEEEEeCCCCC
Confidence 355554455544 3445789999999999999999999866 3 233555555444443
No 486
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.52 E-value=0.064 Score=46.56 Aligned_cols=35 Identities=20% Similarity=0.067 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||.+.+.... ....+.+++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 59 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR----PPASGEITL 59 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 34689999999999999999999744 223455555
No 487
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.52 E-value=0.061 Score=47.57 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|..|+|||||++.+.... .-.....+.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~~~~G~i~i~ 70 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRT-EGNVSVEGDIHYN 70 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccC-CCCCCcceEEEEC
Confidence 44699999999999999999999844 2111345666653
No 488
>PRK10867 signal recognition particle protein; Provisional
Probab=93.51 E-value=0.29 Score=48.47 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.+|.++|++|+||||.+..+....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999888777644
No 489
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.49 E-value=0.064 Score=49.10 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998743
No 490
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.49 E-value=0.064 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|..|+|||||++.+...
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999974
No 491
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.48 E-value=0.067 Score=45.91 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999999843
No 492
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.48 E-value=0.065 Score=48.69 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||++.+.... ....+.+++
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~----~p~~G~i~~ 80 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLL----QPTSGEVRV 80 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc----CCCceEEEE
Confidence 34699999999999999999999743 234566655
No 493
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.47 E-value=0.11 Score=46.63 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||.+.+.... ....+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 59 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGIL----RPTSGEIIF 59 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 34599999999999999999999743 234566665
No 494
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.46 E-value=0.066 Score=45.28 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
-.|+|.|++|.|||||-+.+++
T Consensus 30 e~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHh
Confidence 4799999999999999999998
No 495
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.46 E-value=0.063 Score=48.45 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|..|+|||||++.+.... ....+.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 59 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL----PVKSGSIRL 59 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEE
Confidence 44699999999999999999999743 233455555
No 496
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.46 E-value=0.064 Score=49.47 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||++.+...
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4469999999999999999999874
No 497
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.45 E-value=0.087 Score=45.30 Aligned_cols=40 Identities=23% Similarity=0.061 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
..++.+.|+.|+|||.||+.+.... .+ ......+-+..+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l-~~-~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL-FV-GSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH-T--SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh-cc-CCccchHHHhhhc
Confidence 4578899999999999999999866 21 3333445455443
No 498
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.45 E-value=0.074 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999855
No 499
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=93.45 E-value=0.066 Score=44.81 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|+|+|.+|+|||||...+.+..
T Consensus 3 i~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999888743
No 500
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.45 E-value=0.12 Score=49.36 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=33.3
Q ss_pred cccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 138 IVGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 138 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++|......++.+.+.. ....-|.|+|..|+||+++|+.+++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 36766677777666653 234467899999999999999999754
Done!