Query 043778
Match_columns 405
No_of_seqs 179 out of 2154
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:06:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.6E-34 1.2E-38 291.3 17.5 241 139-384 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 5.3E-25 1.8E-29 243.7 17.8 230 136-382 124-452 (1249)
3 1vt4_I APAF-1 related killer D 99.9 4.7E-24 1.6E-28 222.9 12.7 214 137-375 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 5.9E-22 2E-26 203.3 17.4 224 136-379 124-449 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.6 4E-16 1.4E-20 124.0 9.0 82 7-95 1-83 (115)
6 1w5s_A Origin recognition comp 98.2 4.6E-06 1.6E-10 80.8 9.8 100 136-237 22-134 (412)
7 2qby_B CDC6 homolog 3, cell di 98.2 4.5E-06 1.5E-10 80.1 8.9 78 136-213 20-107 (384)
8 2qen_A Walker-type ATPase; unk 98.1 3.3E-06 1.1E-10 79.7 7.2 68 136-213 12-85 (350)
9 2qby_A CDC6 homolog 1, cell di 98.1 3.5E-06 1.2E-10 80.6 7.3 75 136-213 20-101 (386)
10 1hqc_A RUVB; extended AAA-ATPa 98.1 9.7E-06 3.3E-10 75.9 10.0 46 136-181 12-62 (324)
11 1fnn_A CDC6P, cell division co 98.1 2.4E-05 8.3E-10 74.9 12.8 78 136-215 17-100 (389)
12 2v1u_A Cell division control p 98.1 1.1E-05 3.9E-10 77.1 10.0 79 136-215 19-105 (387)
13 2fna_A Conserved hypothetical 98.0 1.5E-05 5.1E-10 75.3 9.2 67 136-212 13-84 (357)
14 1jbk_A CLPB protein; beta barr 97.9 1.5E-05 5.2E-10 67.9 5.9 46 136-181 22-67 (195)
15 2p65_A Hypothetical protein PF 97.8 2.1E-05 7.3E-10 66.8 5.2 46 136-181 22-67 (187)
16 2chg_A Replication factor C sm 97.7 6.3E-05 2.2E-09 65.6 7.3 46 136-181 17-62 (226)
17 1njg_A DNA polymerase III subu 97.6 6.9E-05 2.4E-09 66.2 5.5 46 136-181 23-69 (250)
18 3te6_A Regulatory protein SIR3 97.5 0.00022 7.6E-09 66.4 7.8 80 136-215 20-107 (318)
19 3n70_A Transport activator; si 97.2 0.00036 1.2E-08 57.1 5.6 45 137-181 2-48 (145)
20 1sxj_B Activator 1 37 kDa subu 97.2 0.00028 9.6E-09 65.6 5.4 46 136-181 21-66 (323)
21 1iqp_A RFCS; clamp loader, ext 97.2 0.00031 1.1E-08 65.4 5.6 46 136-181 25-70 (327)
22 3h4m_A Proteasome-activating n 97.2 0.00049 1.7E-08 62.9 6.2 46 136-181 17-75 (285)
23 3pxg_A Negative regulator of g 97.1 0.00042 1.4E-08 68.3 5.3 46 136-181 180-225 (468)
24 3bos_A Putative DNA replicatio 97.0 0.00073 2.5E-08 59.7 5.6 59 136-197 28-89 (242)
25 1sxj_D Activator 1 41 kDa subu 97.0 0.00051 1.7E-08 64.7 4.3 46 136-181 37-82 (353)
26 3b9p_A CG5977-PA, isoform A; A 96.9 0.00099 3.4E-08 61.3 5.8 46 136-181 21-78 (297)
27 2chq_A Replication factor C sm 96.9 0.00064 2.2E-08 63.0 4.4 46 136-181 17-62 (319)
28 1jr3_A DNA polymerase III subu 96.9 0.00094 3.2E-08 63.4 5.5 46 136-181 16-62 (373)
29 3cf0_A Transitional endoplasmi 96.8 0.0011 3.9E-08 61.2 5.5 46 136-181 15-73 (301)
30 1sxj_A Activator 1 95 kDa subu 96.8 0.0011 3.8E-08 66.2 5.8 46 136-181 39-101 (516)
31 3syl_A Protein CBBX; photosynt 96.8 0.0012 4E-08 61.1 5.6 45 137-181 32-91 (309)
32 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0012 4.3E-08 59.2 5.6 46 136-181 6-63 (262)
33 3pfi_A Holliday junction ATP-d 96.8 0.0011 3.9E-08 62.1 5.5 46 136-181 29-79 (338)
34 3pvs_A Replication-associated 96.8 0.00096 3.3E-08 65.3 4.9 46 136-181 26-74 (447)
35 3co5_A Putative two-component 96.7 0.00054 1.8E-08 55.9 2.2 46 136-181 4-51 (143)
36 3d8b_A Fidgetin-like protein 1 96.7 0.0016 5.6E-08 61.7 5.8 46 136-181 84-141 (357)
37 1rz3_A Hypothetical protein rb 96.7 0.002 6.7E-08 55.7 5.7 41 141-181 3-46 (201)
38 1ofh_A ATP-dependent HSL prote 96.7 0.0015 5.2E-08 60.1 5.2 46 136-181 15-74 (310)
39 1sxj_E Activator 1 40 kDa subu 96.7 0.00095 3.2E-08 63.0 3.8 45 136-180 14-59 (354)
40 3pxi_A Negative regulator of g 96.7 0.0014 4.8E-08 68.7 5.3 45 136-180 180-224 (758)
41 3uk6_A RUVB-like 2; hexameric 96.7 0.0018 6.3E-08 61.3 5.7 46 136-181 44-94 (368)
42 3ec2_A DNA replication protein 96.6 0.0015 5.1E-08 55.3 4.4 40 142-181 20-62 (180)
43 2w58_A DNAI, primosome compone 96.6 0.0027 9.2E-08 54.7 6.1 50 144-196 37-90 (202)
44 3c8u_A Fructokinase; YP_612366 96.6 0.0018 6.3E-08 56.2 5.0 38 144-181 7-46 (208)
45 1qvr_A CLPB protein; coiled co 96.6 0.0014 4.7E-08 69.7 4.8 46 136-181 170-215 (854)
46 1sxj_C Activator 1 40 kDa subu 96.6 0.002 6.8E-08 60.6 5.5 46 136-181 25-70 (340)
47 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0024 8.1E-08 59.7 5.9 46 136-181 12-69 (322)
48 3eie_A Vacuolar protein sortin 96.6 0.0024 8.2E-08 59.6 5.9 46 136-181 18-75 (322)
49 1lv7_A FTSH; alpha/beta domain 96.6 0.002 6.7E-08 58.0 5.1 46 136-181 12-69 (257)
50 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0023 7.8E-08 67.1 5.9 45 136-180 186-230 (758)
51 1in4_A RUVB, holliday junction 96.5 0.0017 5.7E-08 61.0 4.5 46 136-181 25-75 (334)
52 3lw7_A Adenylate kinase relate 96.4 0.0016 5.4E-08 54.4 3.2 22 158-180 2-23 (179)
53 1d2n_A N-ethylmaleimide-sensit 96.4 0.0037 1.3E-07 56.6 5.7 46 136-181 33-88 (272)
54 2bjv_A PSP operon transcriptio 96.4 0.0026 8.9E-08 57.4 4.6 46 136-181 6-53 (265)
55 3vfd_A Spastin; ATPase, microt 96.4 0.0037 1.3E-07 59.9 5.8 46 136-181 115-172 (389)
56 3u61_B DNA polymerase accessor 96.4 0.0035 1.2E-07 58.3 5.5 46 136-181 26-72 (324)
57 4fcw_A Chaperone protein CLPB; 96.4 0.0024 8.3E-08 58.9 4.3 46 136-181 17-71 (311)
58 3kb2_A SPBC2 prophage-derived 96.3 0.0022 7.6E-08 53.4 3.5 24 158-181 2-25 (173)
59 1qhx_A CPT, protein (chloramph 96.3 0.0023 7.7E-08 53.9 3.5 24 158-181 4-27 (178)
60 2qp9_X Vacuolar protein sortin 96.3 0.0038 1.3E-07 59.1 5.3 46 136-181 51-108 (355)
61 1ojl_A Transcriptional regulat 96.3 0.0044 1.5E-07 57.4 5.6 46 136-181 2-49 (304)
62 1zp6_A Hypothetical protein AT 96.3 0.0023 7.8E-08 54.5 3.5 25 156-180 8-32 (191)
63 1kgd_A CASK, peripheral plasma 96.3 0.0023 8E-08 54.2 3.5 24 158-181 6-29 (180)
64 1ly1_A Polynucleotide kinase; 96.3 0.0026 9E-08 53.4 3.7 22 158-179 3-24 (181)
65 3uie_A Adenylyl-sulfate kinase 96.3 0.0031 1.1E-07 54.4 4.2 28 154-181 22-49 (200)
66 1kag_A SKI, shikimate kinase I 96.2 0.0023 7.7E-08 53.6 3.0 24 158-181 5-28 (173)
67 2zan_A Vacuolar protein sortin 96.2 0.0051 1.7E-07 60.1 5.9 46 136-181 134-191 (444)
68 2r62_A Cell division protease 96.2 0.0019 6.4E-08 58.4 2.4 46 136-181 11-68 (268)
69 3vaa_A Shikimate kinase, SK; s 96.2 0.0029 1E-07 54.5 3.5 26 156-181 24-49 (199)
70 4eun_A Thermoresistant glucoki 96.1 0.0033 1.1E-07 54.2 3.7 27 155-181 27-53 (200)
71 1odf_A YGR205W, hypothetical 3 96.1 0.0057 2E-07 56.1 5.5 26 156-181 30-55 (290)
72 2kjq_A DNAA-related protein; s 96.1 0.0026 8.8E-08 52.3 2.8 57 136-198 18-74 (149)
73 3tr0_A Guanylate kinase, GMP k 96.1 0.0034 1.2E-07 54.1 3.5 25 157-181 7-31 (205)
74 4b4t_M 26S protease regulatory 96.1 0.0052 1.8E-07 59.5 5.0 46 136-181 181-239 (434)
75 4b4t_L 26S protease subunit RP 96.0 0.0057 2E-07 59.3 5.2 46 136-181 181-239 (437)
76 2x8a_A Nuclear valosin-contain 96.0 0.0051 1.7E-07 56.0 4.5 46 136-181 10-68 (274)
77 1knq_A Gluconate kinase; ALFA/ 96.0 0.0041 1.4E-07 52.2 3.6 25 157-181 8-32 (175)
78 1n0w_A DNA repair protein RAD5 96.0 0.026 9E-07 49.6 9.2 57 156-214 23-83 (243)
79 4b4t_K 26S protease regulatory 96.0 0.0055 1.9E-07 59.3 4.9 46 136-181 172-230 (428)
80 3trf_A Shikimate kinase, SK; a 96.0 0.0039 1.3E-07 52.8 3.5 25 157-181 5-29 (185)
81 2r44_A Uncharacterized protein 96.0 0.0045 1.5E-07 57.8 4.2 44 136-181 27-70 (331)
82 3fwy_A Light-independent proto 96.0 0.004 1.4E-07 57.9 3.8 27 155-181 46-72 (314)
83 3t61_A Gluconokinase; PSI-biol 96.0 0.0034 1.2E-07 54.1 3.1 25 157-181 18-42 (202)
84 2hf9_A Probable hydrogenase ni 96.0 0.0078 2.7E-07 52.6 5.5 39 143-181 24-62 (226)
85 3asz_A Uridine kinase; cytidin 96.0 0.0044 1.5E-07 53.7 3.8 26 156-181 5-30 (211)
86 1nks_A Adenylate kinase; therm 96.0 0.0041 1.4E-07 52.8 3.6 24 158-181 2-25 (194)
87 3a00_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 53.3 3.1 24 158-181 2-25 (186)
88 2rhm_A Putative kinase; P-loop 95.9 0.0049 1.7E-07 52.4 3.8 25 157-181 5-29 (193)
89 2bdt_A BH3686; alpha-beta prot 95.9 0.0046 1.6E-07 52.6 3.6 22 158-179 3-24 (189)
90 2j41_A Guanylate kinase; GMP, 95.9 0.0046 1.6E-07 53.2 3.7 24 157-180 6-29 (207)
91 1l8q_A Chromosomal replication 95.9 0.01 3.4E-07 55.3 6.2 38 144-181 22-61 (324)
92 2wsm_A Hydrogenase expression/ 95.9 0.0063 2.1E-07 53.0 4.5 43 139-181 12-54 (221)
93 4gp7_A Metallophosphoesterase; 95.9 0.0039 1.3E-07 52.3 3.0 24 156-179 8-31 (171)
94 3tau_A Guanylate kinase, GMP k 95.9 0.0048 1.6E-07 53.6 3.7 26 156-181 7-32 (208)
95 1cke_A CK, MSSA, protein (cyti 95.9 0.0043 1.5E-07 54.4 3.5 24 158-181 6-29 (227)
96 1kht_A Adenylate kinase; phosp 95.9 0.0045 1.5E-07 52.5 3.5 24 158-181 4-27 (192)
97 1ye8_A Protein THEP1, hypothet 95.9 0.0047 1.6E-07 52.3 3.5 23 159-181 2-24 (178)
98 2yvu_A Probable adenylyl-sulfa 95.9 0.0054 1.8E-07 52.1 3.9 26 156-181 12-37 (186)
99 2qor_A Guanylate kinase; phosp 95.9 0.0043 1.5E-07 53.6 3.3 26 156-181 11-36 (204)
100 2jaq_A Deoxyguanosine kinase; 95.9 0.0046 1.6E-07 53.0 3.5 23 159-181 2-24 (205)
101 1ixz_A ATP-dependent metallopr 95.9 0.01 3.6E-07 53.0 5.9 46 136-181 16-73 (254)
102 2if2_A Dephospho-COA kinase; a 95.9 0.0047 1.6E-07 53.2 3.4 22 158-179 2-23 (204)
103 1tev_A UMP-CMP kinase; ploop, 95.8 0.0054 1.9E-07 52.1 3.7 25 157-181 3-27 (196)
104 3iij_A Coilin-interacting nucl 95.8 0.0049 1.7E-07 52.0 3.4 25 157-181 11-35 (180)
105 4b4t_J 26S protease regulatory 95.8 0.0063 2.2E-07 58.2 4.4 46 136-181 148-206 (405)
106 1gvn_B Zeta; postsegregational 95.8 0.0086 2.9E-07 54.9 5.2 26 156-181 32-57 (287)
107 1lvg_A Guanylate kinase, GMP k 95.8 0.0044 1.5E-07 53.4 3.0 24 158-181 5-28 (198)
108 1uf9_A TT1252 protein; P-loop, 95.8 0.0061 2.1E-07 52.3 4.0 24 156-179 7-30 (203)
109 3tqc_A Pantothenate kinase; bi 95.8 0.0098 3.4E-07 55.3 5.5 26 156-181 91-116 (321)
110 3hws_A ATP-dependent CLP prote 95.8 0.0087 3E-07 56.7 5.3 45 137-181 16-75 (363)
111 2ze6_A Isopentenyl transferase 95.8 0.0056 1.9E-07 55.0 3.7 24 158-181 2-25 (253)
112 1uj2_A Uridine-cytidine kinase 95.8 0.006 2.1E-07 54.6 3.9 26 156-181 21-46 (252)
113 2ga8_A Hypothetical 39.9 kDa p 95.8 0.011 3.9E-07 55.4 5.8 43 139-181 2-48 (359)
114 2qt1_A Nicotinamide riboside k 95.8 0.006 2E-07 52.8 3.7 25 156-180 20-44 (207)
115 1zuh_A Shikimate kinase; alpha 95.8 0.0056 1.9E-07 50.9 3.5 26 156-181 6-31 (168)
116 1via_A Shikimate kinase; struc 95.8 0.0048 1.6E-07 51.8 3.0 23 159-181 6-28 (175)
117 1g8p_A Magnesium-chelatase 38 95.8 0.0043 1.5E-07 58.2 3.0 46 136-181 24-69 (350)
118 1jjv_A Dephospho-COA kinase; P 95.7 0.0058 2E-07 52.7 3.5 22 158-179 3-24 (206)
119 2c95_A Adenylate kinase 1; tra 95.7 0.0062 2.1E-07 51.9 3.6 26 156-181 8-33 (196)
120 2c9o_A RUVB-like 1; hexameric 95.7 0.011 3.8E-07 57.9 5.9 46 136-181 37-87 (456)
121 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0093 3.2E-07 59.0 5.3 44 136-181 22-65 (500)
122 3hu3_A Transitional endoplasmi 95.7 0.011 3.9E-07 58.3 5.8 46 136-181 204-262 (489)
123 2p5t_B PEZT; postsegregational 95.7 0.0079 2.7E-07 53.9 4.4 40 142-181 12-56 (253)
124 1iy2_A ATP-dependent metallopr 95.7 0.013 4.4E-07 53.3 5.8 46 136-181 40-97 (278)
125 2bbw_A Adenylate kinase 4, AK4 95.7 0.0061 2.1E-07 54.3 3.6 26 156-181 26-51 (246)
126 1um8_A ATP-dependent CLP prote 95.7 0.011 3.7E-07 56.3 5.6 46 136-181 21-96 (376)
127 2z4s_A Chromosomal replication 95.7 0.014 4.9E-07 56.8 6.4 37 145-181 117-154 (440)
128 1y63_A LMAJ004144AAA protein; 95.7 0.0069 2.4E-07 51.4 3.7 25 156-180 9-33 (184)
129 2iyv_A Shikimate kinase, SK; t 95.7 0.0053 1.8E-07 51.9 2.9 24 158-181 3-26 (184)
130 3cm0_A Adenylate kinase; ATP-b 95.7 0.0069 2.4E-07 51.2 3.6 24 158-181 5-28 (186)
131 2plr_A DTMP kinase, probable t 95.6 0.0075 2.6E-07 52.0 3.9 25 157-181 4-28 (213)
132 1ukz_A Uridylate kinase; trans 95.6 0.0076 2.6E-07 51.8 3.9 26 156-181 14-39 (203)
133 2bwj_A Adenylate kinase 5; pho 95.6 0.0069 2.3E-07 51.8 3.5 25 157-181 12-36 (199)
134 3t15_A Ribulose bisphosphate c 95.6 0.0079 2.7E-07 55.3 4.1 26 156-181 35-60 (293)
135 3aez_A Pantothenate kinase; tr 95.6 0.0073 2.5E-07 56.0 3.9 26 156-181 89-114 (312)
136 1znw_A Guanylate kinase, GMP k 95.6 0.0069 2.4E-07 52.5 3.5 26 156-181 19-44 (207)
137 4b4t_H 26S protease regulatory 95.6 0.0091 3.1E-07 58.0 4.5 46 136-181 209-267 (467)
138 1e6c_A Shikimate kinase; phosp 95.6 0.0063 2.1E-07 50.8 3.0 24 158-181 3-26 (173)
139 1z6g_A Guanylate kinase; struc 95.6 0.0062 2.1E-07 53.3 3.0 26 156-181 22-47 (218)
140 1qf9_A UMP/CMP kinase, protein 95.5 0.0082 2.8E-07 50.9 3.7 25 157-181 6-30 (194)
141 3ney_A 55 kDa erythrocyte memb 95.5 0.0083 2.8E-07 51.6 3.7 26 156-181 18-43 (197)
142 2jeo_A Uridine-cytidine kinase 95.5 0.0085 2.9E-07 53.4 3.9 25 156-180 24-48 (245)
143 1ex7_A Guanylate kinase; subst 95.5 0.007 2.4E-07 51.6 3.1 24 158-181 2-25 (186)
144 2pbr_A DTMP kinase, thymidylat 95.5 0.0079 2.7E-07 51.1 3.5 23 159-181 2-24 (195)
145 3umf_A Adenylate kinase; rossm 95.5 0.0085 2.9E-07 52.4 3.7 26 156-181 28-53 (217)
146 4a74_A DNA repair and recombin 95.5 0.048 1.7E-06 47.4 8.7 46 156-202 24-73 (231)
147 2pt5_A Shikimate kinase, SK; a 95.5 0.0083 2.8E-07 49.8 3.4 23 159-181 2-24 (168)
148 2cdn_A Adenylate kinase; phosp 95.5 0.0086 3E-07 51.4 3.7 26 156-181 19-44 (201)
149 2cvh_A DNA repair and recombin 95.5 0.028 9.7E-07 48.6 7.1 45 156-206 19-63 (220)
150 4b4t_I 26S protease regulatory 95.5 0.012 4.2E-07 56.5 4.9 46 136-181 182-240 (437)
151 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0092 3.2E-07 53.7 3.9 24 157-180 4-27 (260)
152 4e22_A Cytidylate kinase; P-lo 95.4 0.0081 2.8E-07 53.9 3.3 26 156-181 26-51 (252)
153 2wwf_A Thymidilate kinase, put 95.4 0.0095 3.2E-07 51.5 3.7 25 157-181 10-34 (212)
154 2grj_A Dephospho-COA kinase; T 95.4 0.0096 3.3E-07 51.1 3.6 25 156-180 11-35 (192)
155 1nn5_A Similar to deoxythymidy 95.4 0.0096 3.3E-07 51.5 3.7 26 156-181 8-33 (215)
156 2vli_A Antibiotic resistance p 95.4 0.0061 2.1E-07 51.4 2.3 25 157-181 5-29 (183)
157 1s96_A Guanylate kinase, GMP k 95.3 0.0095 3.3E-07 52.2 3.5 26 156-181 15-40 (219)
158 1gtv_A TMK, thymidylate kinase 95.3 0.005 1.7E-07 53.3 1.7 24 158-181 1-24 (214)
159 1htw_A HI0065; nucleotide-bind 95.3 0.011 3.8E-07 49.0 3.6 25 156-180 32-56 (158)
160 2ce7_A Cell division protein F 95.3 0.018 6E-07 56.6 5.5 46 136-181 16-73 (476)
161 3hr8_A Protein RECA; alpha and 95.3 0.061 2.1E-06 50.7 9.0 74 156-237 60-136 (356)
162 1xjc_A MOBB protein homolog; s 95.3 0.011 3.8E-07 49.5 3.6 25 157-181 4-28 (169)
163 3tlx_A Adenylate kinase 2; str 95.3 0.02 6.8E-07 50.9 5.5 26 156-181 28-53 (243)
164 2z43_A DNA repair and recombin 95.3 0.064 2.2E-06 49.8 9.2 58 156-215 106-167 (324)
165 2z0h_A DTMP kinase, thymidylat 95.3 0.011 3.6E-07 50.5 3.5 23 159-181 2-24 (197)
166 2v54_A DTMP kinase, thymidylat 95.3 0.012 4E-07 50.5 3.7 24 157-180 4-27 (204)
167 3fb4_A Adenylate kinase; psych 95.2 0.011 3.7E-07 51.4 3.5 23 159-181 2-24 (216)
168 1aky_A Adenylate kinase; ATP:A 95.2 0.012 4.1E-07 51.4 3.7 25 157-181 4-28 (220)
169 2f1r_A Molybdopterin-guanine d 95.2 0.0069 2.4E-07 50.9 2.0 24 158-181 3-26 (171)
170 1vht_A Dephospho-COA kinase; s 95.2 0.013 4.4E-07 51.0 3.9 23 157-179 4-26 (218)
171 2pez_A Bifunctional 3'-phospho 95.2 0.014 4.6E-07 49.2 3.9 25 157-181 5-29 (179)
172 1zd8_A GTP:AMP phosphotransfer 95.2 0.011 3.9E-07 51.8 3.5 25 157-181 7-31 (227)
173 3dl0_A Adenylate kinase; phosp 95.2 0.012 4E-07 51.2 3.6 23 159-181 2-24 (216)
174 1rj9_A FTSY, signal recognitio 95.2 0.013 4.3E-07 54.2 3.9 26 156-181 101-126 (304)
175 1v5w_A DMC1, meiotic recombina 95.2 0.08 2.7E-06 49.6 9.5 58 156-215 121-182 (343)
176 1ypw_A Transitional endoplasmi 95.1 0.01 3.6E-07 62.4 3.5 46 136-181 204-262 (806)
177 2i3b_A HCR-ntpase, human cance 95.1 0.011 3.8E-07 50.5 3.1 24 158-181 2-25 (189)
178 3lda_A DNA repair protein RAD5 95.1 0.087 3E-06 50.5 9.6 58 156-215 177-238 (400)
179 1m7g_A Adenylylsulfate kinase; 95.1 0.014 4.7E-07 50.7 3.6 27 155-181 23-49 (211)
180 2ehv_A Hypothetical protein PH 95.1 0.012 4.1E-07 52.1 3.3 23 156-178 29-51 (251)
181 1zak_A Adenylate kinase; ATP:A 95.1 0.012 4.2E-07 51.4 3.3 25 157-181 5-29 (222)
182 1sq5_A Pantothenate kinase; P- 95.0 0.014 4.9E-07 53.9 3.8 26 156-181 79-104 (308)
183 1g41_A Heat shock protein HSLU 95.0 0.017 6E-07 56.0 4.5 46 136-181 15-74 (444)
184 3ake_A Cytidylate kinase; CMP 95.0 0.014 4.8E-07 50.2 3.5 23 159-181 4-26 (208)
185 2f6r_A COA synthase, bifunctio 95.0 0.014 4.6E-07 53.3 3.5 24 156-179 74-97 (281)
186 3lnc_A Guanylate kinase, GMP k 95.0 0.0085 2.9E-07 52.8 2.1 23 157-179 27-50 (231)
187 3tif_A Uncharacterized ABC tra 95.0 0.013 4.4E-07 52.0 3.2 36 156-195 30-65 (235)
188 3bh0_A DNAB-like replicative h 95.0 0.08 2.7E-06 49.0 8.8 53 156-213 67-119 (315)
189 3nwj_A ATSK2; P loop, shikimat 95.0 0.013 4.3E-07 52.6 3.0 25 157-181 48-72 (250)
190 2pcj_A ABC transporter, lipopr 94.9 0.013 4.4E-07 51.6 3.0 35 156-194 29-63 (224)
191 2i1q_A DNA repair and recombin 94.9 0.085 2.9E-06 48.9 8.8 58 156-215 97-168 (322)
192 3k1j_A LON protease, ATP-depen 94.9 0.019 6.6E-07 58.3 4.6 44 136-181 41-84 (604)
193 2onk_A Molybdate/tungstate ABC 94.9 0.015 5.1E-07 51.7 3.3 34 156-194 24-57 (240)
194 1tue_A Replication protein E1; 94.9 0.028 9.7E-07 48.4 4.9 38 144-181 44-82 (212)
195 3b9q_A Chloroplast SRP recepto 94.8 0.018 6.1E-07 53.1 3.8 26 156-181 99-124 (302)
196 3r20_A Cytidylate kinase; stru 94.8 0.017 5.9E-07 51.0 3.6 25 157-181 9-33 (233)
197 2cbz_A Multidrug resistance-as 94.8 0.014 4.9E-07 51.8 3.0 25 156-180 30-54 (237)
198 1np6_A Molybdopterin-guanine d 94.8 0.019 6.3E-07 48.4 3.6 25 157-181 6-30 (174)
199 3end_A Light-independent proto 94.8 0.018 6.3E-07 53.0 3.8 41 155-198 39-79 (307)
200 3sr0_A Adenylate kinase; phosp 94.8 0.018 6E-07 50.0 3.4 23 159-181 2-24 (206)
201 2px0_A Flagellar biosynthesis 94.8 0.018 6.1E-07 53.0 3.6 26 156-181 104-129 (296)
202 3d3q_A TRNA delta(2)-isopenten 94.7 0.018 6.3E-07 53.8 3.6 24 158-181 8-31 (340)
203 3p32_A Probable GTPase RV1496/ 94.7 0.039 1.3E-06 52.1 6.0 37 145-181 65-103 (355)
204 3gfo_A Cobalt import ATP-bindi 94.7 0.017 5.7E-07 52.6 3.2 35 156-194 33-67 (275)
205 1b0u_A Histidine permease; ABC 94.7 0.016 5.4E-07 52.3 3.0 35 156-194 31-65 (262)
206 3b85_A Phosphate starvation-in 94.7 0.013 4.5E-07 50.9 2.4 24 157-180 22-45 (208)
207 2d2e_A SUFC protein; ABC-ATPas 94.7 0.018 6.3E-07 51.5 3.4 24 156-179 28-51 (250)
208 1e4v_A Adenylate kinase; trans 94.6 0.019 6.6E-07 49.8 3.4 23 159-181 2-24 (214)
209 2dhr_A FTSH; AAA+ protein, hex 94.6 0.035 1.2E-06 54.9 5.6 46 136-181 31-88 (499)
210 1ji0_A ABC transporter; ATP bi 94.6 0.017 5.7E-07 51.4 3.1 35 156-194 31-65 (240)
211 2xb4_A Adenylate kinase; ATP-b 94.6 0.019 6.7E-07 50.2 3.5 23 159-181 2-24 (223)
212 2qgz_A Helicase loader, putati 94.6 0.033 1.1E-06 51.4 5.2 38 144-181 136-176 (308)
213 2yhs_A FTSY, cell division pro 94.6 0.034 1.2E-06 54.6 5.4 42 156-201 292-333 (503)
214 1mv5_A LMRA, multidrug resista 94.6 0.018 6.2E-07 51.3 3.2 26 156-181 27-52 (243)
215 4g1u_C Hemin import ATP-bindin 94.6 0.018 6.2E-07 52.1 3.2 35 156-194 36-70 (266)
216 2pze_A Cystic fibrosis transme 94.6 0.017 6E-07 50.9 3.0 26 156-181 33-58 (229)
217 1g6h_A High-affinity branched- 94.6 0.017 5.9E-07 51.9 3.1 35 156-194 32-66 (257)
218 2v9p_A Replication protein E1; 94.6 0.019 6.7E-07 52.8 3.4 25 156-180 125-149 (305)
219 1sgw_A Putative ABC transporte 94.6 0.015 5.2E-07 50.7 2.6 35 156-194 34-68 (214)
220 3be4_A Adenylate kinase; malar 94.6 0.021 7E-07 49.8 3.4 24 158-181 6-29 (217)
221 2ff7_A Alpha-hemolysin translo 94.6 0.018 6.1E-07 51.5 3.1 35 156-194 34-68 (247)
222 2olj_A Amino acid ABC transpor 94.5 0.018 6.1E-07 52.0 3.0 35 156-194 49-83 (263)
223 2zu0_C Probable ATP-dependent 94.5 0.02 6.8E-07 51.8 3.3 24 156-179 45-68 (267)
224 1ltq_A Polynucleotide kinase; 94.5 0.022 7.6E-07 52.2 3.7 23 158-180 3-25 (301)
225 3e70_C DPA, signal recognition 94.5 0.024 8E-07 52.9 3.8 27 155-181 127-153 (328)
226 3m6a_A ATP-dependent protease 94.5 0.028 9.5E-07 56.4 4.6 46 136-181 81-132 (543)
227 2eyu_A Twitching motility prot 94.5 0.024 8E-07 51.1 3.6 26 155-180 23-48 (261)
228 1vpl_A ABC transporter, ATP-bi 94.4 0.019 6.7E-07 51.5 3.0 35 156-194 40-74 (256)
229 2ghi_A Transport protein; mult 94.4 0.02 6.7E-07 51.6 3.1 34 156-194 45-78 (260)
230 1pzn_A RAD51, DNA repair and r 94.4 0.092 3.1E-06 49.4 7.8 56 156-213 130-189 (349)
231 2ixe_A Antigen peptide transpo 94.4 0.02 6.7E-07 52.0 3.1 35 156-194 44-78 (271)
232 1vma_A Cell division protein F 94.4 0.026 8.7E-07 52.2 3.8 26 156-181 103-128 (306)
233 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.023 7.8E-07 49.6 3.4 48 156-208 22-69 (235)
234 1ak2_A Adenylate kinase isoenz 94.4 0.026 8.8E-07 49.8 3.7 25 157-181 16-40 (233)
235 2og2_A Putative signal recogni 94.4 0.025 8.6E-07 53.4 3.8 26 156-181 156-181 (359)
236 1oix_A RAS-related protein RAB 94.4 0.025 8.5E-07 48.1 3.4 25 157-181 29-53 (191)
237 3crm_A TRNA delta(2)-isopenten 94.4 0.026 8.8E-07 52.4 3.7 24 158-181 6-29 (323)
238 2qi9_C Vitamin B12 import ATP- 94.4 0.021 7.2E-07 51.1 3.0 34 156-194 25-58 (249)
239 2yz2_A Putative ABC transporte 94.3 0.021 7.3E-07 51.6 3.1 35 156-194 32-66 (266)
240 3exa_A TRNA delta(2)-isopenten 94.3 0.029 9.9E-07 51.7 3.9 24 157-180 3-26 (322)
241 3cf2_A TER ATPase, transitiona 94.3 0.042 1.4E-06 57.3 5.5 46 136-181 204-262 (806)
242 2nq2_C Hypothetical ABC transp 94.3 0.022 7.5E-07 51.1 3.0 26 156-181 30-55 (253)
243 2ihy_A ABC transporter, ATP-bi 94.3 0.022 7.7E-07 51.8 3.0 36 156-195 46-81 (279)
244 3a8t_A Adenylate isopentenyltr 94.2 0.03 1E-06 52.1 3.9 26 156-181 39-64 (339)
245 3sop_A Neuronal-specific septi 94.2 0.027 9.2E-07 51.0 3.4 23 159-181 4-26 (270)
246 1svm_A Large T antigen; AAA+ f 94.2 0.05 1.7E-06 51.7 5.4 26 156-181 168-193 (377)
247 1yrb_A ATP(GTP)binding protein 94.2 0.031 1.1E-06 50.0 3.8 26 156-181 13-38 (262)
248 1a7j_A Phosphoribulokinase; tr 94.2 0.013 4.5E-07 53.7 1.3 26 156-181 4-29 (290)
249 2f9l_A RAB11B, member RAS onco 94.2 0.027 9.3E-07 48.0 3.2 23 158-180 6-28 (199)
250 2vp4_A Deoxynucleoside kinase; 94.1 0.023 7.7E-07 50.1 2.7 24 156-179 19-42 (230)
251 3upu_A ATP-dependent DNA helic 94.1 0.061 2.1E-06 52.6 6.0 38 143-181 32-69 (459)
252 1nlf_A Regulatory protein REPA 94.1 0.028 9.5E-07 51.0 3.3 26 156-181 29-54 (279)
253 1q3t_A Cytidylate kinase; nucl 94.1 0.033 1.1E-06 49.1 3.7 26 156-181 15-40 (236)
254 3zvl_A Bifunctional polynucleo 94.1 0.029 1E-06 54.2 3.6 26 156-181 257-282 (416)
255 2zej_A Dardarin, leucine-rich 94.0 0.024 8.2E-07 47.7 2.6 21 159-179 4-24 (184)
256 2vhj_A Ntpase P4, P4; non- hyd 94.0 0.033 1.1E-06 51.5 3.7 24 157-180 123-146 (331)
257 2zr9_A Protein RECA, recombina 94.0 0.067 2.3E-06 50.3 5.9 45 156-203 60-104 (349)
258 1zu4_A FTSY; GTPase, signal re 94.0 0.035 1.2E-06 51.6 3.8 26 156-181 104-129 (320)
259 2wji_A Ferrous iron transport 94.0 0.032 1.1E-06 46.0 3.2 23 158-180 4-26 (165)
260 3foz_A TRNA delta(2)-isopenten 94.0 0.035 1.2E-06 51.0 3.7 26 156-181 9-34 (316)
261 1xp8_A RECA protein, recombina 94.0 0.19 6.5E-06 47.5 8.9 45 156-203 73-117 (366)
262 1cr0_A DNA primase/helicase; R 93.9 0.031 1E-06 51.2 3.3 53 156-213 34-87 (296)
263 3dm5_A SRP54, signal recogniti 93.9 0.057 2E-06 52.3 5.3 26 156-181 99-124 (443)
264 2ocp_A DGK, deoxyguanosine kin 93.9 0.038 1.3E-06 48.9 3.8 25 157-181 2-26 (241)
265 1u94_A RECA protein, recombina 93.9 0.074 2.5E-06 50.1 6.0 45 156-203 62-106 (356)
266 2pjz_A Hypothetical protein ST 93.9 0.029 9.9E-07 50.6 3.0 33 157-194 30-62 (263)
267 3nh6_A ATP-binding cassette SU 93.9 0.021 7.4E-07 52.6 2.2 35 156-194 79-113 (306)
268 4eaq_A DTMP kinase, thymidylat 93.9 0.037 1.3E-06 48.8 3.6 26 156-181 25-50 (229)
269 2gno_A DNA polymerase III, gam 93.9 0.14 4.8E-06 47.1 7.7 72 141-214 2-75 (305)
270 1p9r_A General secretion pathw 93.8 0.067 2.3E-06 51.6 5.6 29 153-181 163-191 (418)
271 1ls1_A Signal recognition part 93.8 0.04 1.4E-06 50.6 3.8 25 157-181 98-122 (295)
272 3kl4_A SRP54, signal recogniti 93.7 0.057 1.9E-06 52.3 4.9 26 156-181 96-121 (433)
273 2dr3_A UPF0273 protein PH0284; 93.7 0.053 1.8E-06 47.7 4.4 49 156-209 22-70 (247)
274 2ce2_X GTPase HRAS; signaling 93.7 0.038 1.3E-06 44.9 3.2 23 159-181 5-27 (166)
275 2bbs_A Cystic fibrosis transme 93.7 0.033 1.1E-06 51.0 3.0 25 156-180 63-87 (290)
276 1cp2_A CP2, nitrogenase iron p 93.7 0.039 1.3E-06 49.6 3.5 38 158-198 2-39 (269)
277 3pxi_A Negative regulator of g 93.7 0.049 1.7E-06 56.9 4.7 46 136-181 491-545 (758)
278 2dyk_A GTP-binding protein; GT 93.7 0.048 1.6E-06 44.2 3.7 23 158-180 2-24 (161)
279 1z2a_A RAS-related protein RAB 93.7 0.04 1.4E-06 45.0 3.2 23 158-180 6-28 (168)
280 2wjg_A FEOB, ferrous iron tran 93.6 0.039 1.3E-06 46.3 3.1 23 158-180 8-30 (188)
281 3f9v_A Minichromosome maintena 93.6 0.025 8.4E-07 57.4 2.1 46 136-181 295-351 (595)
282 3fvq_A Fe(3+) IONS import ATP- 93.5 0.039 1.3E-06 52.0 3.3 26 156-181 29-54 (359)
283 1zj6_A ADP-ribosylation factor 93.5 0.086 3E-06 44.2 5.2 34 145-179 5-38 (187)
284 3tui_C Methionine import ATP-b 93.5 0.041 1.4E-06 52.0 3.3 35 156-194 53-87 (366)
285 3kta_A Chromosome segregation 93.5 0.049 1.7E-06 45.7 3.5 22 158-179 27-48 (182)
286 1lw7_A Transcriptional regulat 93.4 0.042 1.4E-06 52.0 3.4 25 157-181 170-194 (365)
287 2xxa_A Signal recognition part 93.4 0.049 1.7E-06 52.8 3.8 26 156-181 99-124 (433)
288 2afh_E Nitrogenase iron protei 93.4 0.05 1.7E-06 49.5 3.7 39 157-198 2-40 (289)
289 2nzj_A GTP-binding protein REM 93.4 0.042 1.4E-06 45.3 3.0 23 158-180 5-27 (175)
290 3con_A GTPase NRAS; structural 93.4 0.046 1.6E-06 46.0 3.2 24 158-181 22-45 (190)
291 2qmh_A HPR kinase/phosphorylas 93.4 0.044 1.5E-06 47.0 3.0 24 156-179 33-56 (205)
292 1z47_A CYSA, putative ABC-tran 93.3 0.045 1.6E-06 51.5 3.4 25 156-180 40-64 (355)
293 3jvv_A Twitching mobility prot 93.3 0.071 2.4E-06 50.2 4.7 25 156-180 122-146 (356)
294 1u8z_A RAS-related protein RAL 93.3 0.049 1.7E-06 44.4 3.2 24 158-181 5-28 (168)
295 2gj8_A MNME, tRNA modification 93.3 0.047 1.6E-06 45.4 3.1 23 158-180 5-27 (172)
296 2ged_A SR-beta, signal recogni 93.3 0.049 1.7E-06 45.9 3.2 25 156-180 47-71 (193)
297 2h92_A Cytidylate kinase; ross 93.3 0.046 1.6E-06 47.4 3.1 24 158-181 4-27 (219)
298 1c1y_A RAS-related protein RAP 93.2 0.052 1.8E-06 44.3 3.2 22 159-180 5-26 (167)
299 1kao_A RAP2A; GTP-binding prot 93.2 0.052 1.8E-06 44.1 3.2 22 159-180 5-26 (167)
300 2erx_A GTP-binding protein DI- 93.2 0.05 1.7E-06 44.6 3.1 22 159-180 5-26 (172)
301 2yyz_A Sugar ABC transporter, 93.2 0.049 1.7E-06 51.4 3.4 25 156-180 28-52 (359)
302 3eph_A TRNA isopentenyltransfe 93.2 0.053 1.8E-06 51.7 3.6 24 158-181 3-26 (409)
303 1r6b_X CLPA protein; AAA+, N-t 93.1 0.11 3.6E-06 54.4 6.2 46 136-181 458-512 (758)
304 3iqw_A Tail-anchored protein t 93.1 0.14 4.7E-06 47.8 6.3 30 152-181 11-40 (334)
305 3rlf_A Maltose/maltodextrin im 93.1 0.05 1.7E-06 51.7 3.3 35 156-194 28-62 (381)
306 1ek0_A Protein (GTP-binding pr 93.1 0.053 1.8E-06 44.3 3.2 23 159-181 5-27 (170)
307 1qvr_A CLPB protein; coiled co 93.1 0.058 2E-06 57.2 4.1 46 136-181 558-612 (854)
308 2it1_A 362AA long hypothetical 93.1 0.051 1.7E-06 51.3 3.3 35 156-194 28-62 (362)
309 1z0j_A RAB-22, RAS-related pro 93.1 0.055 1.9E-06 44.3 3.2 23 159-181 8-30 (170)
310 3q85_A GTP-binding protein REM 93.1 0.05 1.7E-06 44.6 3.0 22 158-179 3-24 (169)
311 1z08_A RAS-related protein RAB 93.1 0.055 1.9E-06 44.3 3.2 23 158-180 7-29 (170)
312 2yv5_A YJEQ protein; hydrolase 93.1 0.083 2.9E-06 48.6 4.7 33 145-181 156-188 (302)
313 1moz_A ARL1, ADP-ribosylation 93.1 0.057 2E-06 45.0 3.3 33 147-179 7-40 (183)
314 1g29_1 MALK, maltose transport 93.1 0.053 1.8E-06 51.5 3.4 26 156-181 28-53 (372)
315 1fzq_A ADP-ribosylation factor 93.1 0.08 2.7E-06 44.3 4.2 24 156-179 15-38 (181)
316 2j37_W Signal recognition part 93.0 0.089 3.1E-06 51.9 5.1 26 156-181 100-125 (504)
317 1r8s_A ADP-ribosylation factor 93.0 0.06 2E-06 43.9 3.3 21 160-180 3-23 (164)
318 1m7b_A RND3/RHOE small GTP-bin 93.0 0.055 1.9E-06 45.3 3.2 23 158-180 8-30 (184)
319 3t1o_A Gliding protein MGLA; G 93.0 0.056 1.9E-06 45.5 3.2 23 158-180 15-37 (198)
320 1tq4_A IIGP1, interferon-induc 93.0 0.081 2.8E-06 50.9 4.7 24 156-179 68-91 (413)
321 3q72_A GTP-binding protein RAD 93.0 0.052 1.8E-06 44.3 2.9 21 159-179 4-24 (166)
322 1v43_A Sugar-binding transport 93.0 0.054 1.8E-06 51.4 3.3 25 156-180 36-60 (372)
323 1ky3_A GTP-binding protein YPT 93.0 0.057 1.9E-06 44.8 3.2 25 156-180 7-31 (182)
324 1a5t_A Delta prime, HOLB; zinc 93.0 0.12 4.2E-06 48.1 5.7 40 142-181 8-48 (334)
325 1nij_A Hypothetical protein YJ 92.9 0.047 1.6E-06 50.6 2.8 25 156-180 3-27 (318)
326 3io3_A DEHA2D07832P; chaperone 92.9 0.12 4.2E-06 48.5 5.7 30 152-181 13-42 (348)
327 4gzl_A RAS-related C3 botulinu 92.9 0.068 2.3E-06 45.8 3.6 37 145-181 18-54 (204)
328 2fn4_A P23, RAS-related protei 92.9 0.059 2E-06 44.6 3.2 24 157-180 9-32 (181)
329 1p5z_B DCK, deoxycytidine kina 92.9 0.04 1.4E-06 49.5 2.2 26 156-181 23-48 (263)
330 3io5_A Recombination and repai 92.9 0.22 7.4E-06 46.0 7.1 53 158-216 29-81 (333)
331 2v3c_C SRP54, signal recogniti 92.9 0.038 1.3E-06 53.6 2.2 25 157-181 99-123 (432)
332 1wms_A RAB-9, RAB9, RAS-relate 92.9 0.061 2.1E-06 44.4 3.2 23 158-180 8-30 (177)
333 4a1f_A DNAB helicase, replicat 92.9 0.22 7.5E-06 46.5 7.3 53 156-213 45-97 (338)
334 1g16_A RAS-related protein SEC 92.9 0.062 2.1E-06 44.0 3.2 23 158-180 4-26 (170)
335 2ewv_A Twitching motility prot 92.9 0.063 2.2E-06 51.0 3.6 26 155-180 134-159 (372)
336 3ihw_A Centg3; RAS, centaurin, 92.9 0.061 2.1E-06 45.2 3.2 24 157-180 20-43 (184)
337 4edh_A DTMP kinase, thymidylat 92.8 0.17 5.9E-06 43.9 6.1 25 157-181 6-30 (213)
338 3d31_A Sulfate/molybdate ABC t 92.8 0.045 1.5E-06 51.4 2.5 35 156-194 25-59 (348)
339 1r2q_A RAS-related protein RAB 92.8 0.064 2.2E-06 43.8 3.2 23 158-180 7-29 (170)
340 2hxs_A RAB-26, RAS-related pro 92.8 0.067 2.3E-06 44.2 3.4 23 158-180 7-29 (178)
341 2orw_A Thymidine kinase; TMTK, 92.8 0.067 2.3E-06 45.3 3.4 24 158-181 4-27 (184)
342 3gmt_A Adenylate kinase; ssgci 92.8 0.067 2.3E-06 47.0 3.4 25 157-181 8-32 (230)
343 1m2o_B GTP-binding protein SAR 92.7 0.064 2.2E-06 45.4 3.2 24 157-180 23-46 (190)
344 2obl_A ESCN; ATPase, hydrolase 92.7 0.063 2.2E-06 50.5 3.4 26 156-181 70-95 (347)
345 1nrj_B SR-beta, signal recogni 92.7 0.064 2.2E-06 46.3 3.2 26 156-181 11-36 (218)
346 2qm8_A GTPase/ATPase; G protei 92.7 0.074 2.5E-06 49.8 3.9 26 155-180 53-78 (337)
347 2lkc_A Translation initiation 92.7 0.075 2.6E-06 43.9 3.6 25 156-180 7-31 (178)
348 2gza_A Type IV secretion syste 92.7 0.053 1.8E-06 51.3 2.9 26 156-181 174-199 (361)
349 2qnr_A Septin-2, protein NEDD5 92.7 0.051 1.8E-06 50.0 2.7 21 159-179 20-40 (301)
350 3cr8_A Sulfate adenylyltranfer 92.7 0.093 3.2E-06 52.5 4.7 26 156-181 368-393 (552)
351 2r8r_A Sensor protein; KDPD, P 92.7 0.067 2.3E-06 46.8 3.2 23 159-181 8-30 (228)
352 4dsu_A GTPase KRAS, isoform 2B 92.7 0.067 2.3E-06 44.7 3.2 23 159-181 6-28 (189)
353 1z0f_A RAB14, member RAS oncog 92.7 0.068 2.3E-06 44.1 3.2 25 157-181 15-39 (179)
354 3c5c_A RAS-like protein 12; GD 92.7 0.067 2.3E-06 45.1 3.2 24 157-180 21-44 (187)
355 3lv8_A DTMP kinase, thymidylat 92.6 0.15 5.2E-06 45.0 5.6 25 157-181 27-51 (236)
356 1upt_A ARL1, ADP-ribosylation 92.6 0.071 2.4E-06 43.7 3.2 24 157-180 7-30 (171)
357 1svi_A GTP-binding protein YSX 92.6 0.075 2.6E-06 44.8 3.5 25 156-180 22-46 (195)
358 3ld9_A DTMP kinase, thymidylat 92.6 0.091 3.1E-06 46.0 4.0 28 154-181 18-45 (223)
359 1oxx_K GLCV, glucose, ABC tran 92.6 0.042 1.4E-06 51.8 2.0 25 156-180 30-54 (353)
360 3kkq_A RAS-related protein M-R 92.6 0.07 2.4E-06 44.4 3.2 24 157-180 18-41 (183)
361 1g8f_A Sulfate adenylyltransfe 92.6 0.12 4E-06 51.1 5.2 26 156-181 394-419 (511)
362 2cxx_A Probable GTP-binding pr 92.6 0.062 2.1E-06 45.0 2.9 22 159-180 3-24 (190)
363 3gd7_A Fusion complex of cysti 92.6 0.066 2.3E-06 51.1 3.3 35 156-195 46-80 (390)
364 1j8m_F SRP54, signal recogniti 92.6 0.055 1.9E-06 49.7 2.7 25 157-181 98-122 (297)
365 2bme_A RAB4A, RAS-related prot 92.5 0.07 2.4E-06 44.5 3.2 24 158-181 11-34 (186)
366 1f6b_A SAR1; gtpases, N-termin 92.5 0.11 3.6E-06 44.3 4.3 24 156-179 24-47 (198)
367 3bc1_A RAS-related protein RAB 92.5 0.072 2.5E-06 44.6 3.2 23 158-180 12-34 (195)
368 2y8e_A RAB-protein 6, GH09086P 92.5 0.072 2.5E-06 44.0 3.2 23 158-180 15-37 (179)
369 1pui_A ENGB, probable GTP-bind 92.5 0.04 1.4E-06 47.2 1.6 24 156-179 25-48 (210)
370 1mh1_A RAC1; GTP-binding, GTPa 92.5 0.073 2.5E-06 44.3 3.2 22 159-180 7-28 (186)
371 2www_A Methylmalonic aciduria 92.5 0.081 2.8E-06 49.7 3.8 25 156-180 73-97 (349)
372 2axn_A 6-phosphofructo-2-kinas 92.5 0.082 2.8E-06 52.6 4.0 26 156-181 34-59 (520)
373 2oil_A CATX-8, RAS-related pro 92.5 0.074 2.5E-06 44.8 3.2 25 157-181 25-49 (193)
374 3pqc_A Probable GTP-binding pr 92.5 0.068 2.3E-06 44.9 3.0 25 156-180 22-46 (195)
375 3tw8_B RAS-related protein RAB 92.4 0.069 2.4E-06 44.2 3.0 24 157-180 9-32 (181)
376 2a9k_A RAS-related protein RAL 92.4 0.077 2.6E-06 44.1 3.2 25 157-181 18-42 (187)
377 2iwr_A Centaurin gamma 1; ANK 92.4 0.06 2E-06 44.7 2.5 23 158-180 8-30 (178)
378 3cbq_A GTP-binding protein REM 92.4 0.059 2E-06 45.9 2.5 24 156-179 22-45 (195)
379 2npi_A Protein CLP1; CLP1-PCF1 92.4 0.064 2.2E-06 52.4 3.0 25 156-180 137-161 (460)
380 2bov_A RAla, RAS-related prote 92.3 0.077 2.6E-06 45.1 3.2 24 157-180 14-37 (206)
381 3fdi_A Uncharacterized protein 92.3 0.086 2.9E-06 45.3 3.5 24 158-181 7-30 (201)
382 3bwd_D RAC-like GTP-binding pr 92.3 0.081 2.8E-06 43.9 3.2 24 157-180 8-31 (182)
383 2ffh_A Protein (FFH); SRP54, s 92.3 0.088 3E-06 50.8 3.8 26 156-181 97-122 (425)
384 3t5g_A GTP-binding protein RHE 92.3 0.081 2.8E-06 43.9 3.2 24 157-180 6-29 (181)
385 2efe_B Small GTP-binding prote 92.3 0.082 2.8E-06 43.8 3.2 23 158-180 13-35 (181)
386 1u0j_A DNA replication protein 92.2 0.17 5.7E-06 45.5 5.3 36 145-180 90-127 (267)
387 1vg8_A RAS-related protein RAB 92.2 0.081 2.8E-06 45.0 3.2 25 157-181 8-32 (207)
388 2g6b_A RAS-related protein RAB 92.2 0.084 2.9E-06 43.7 3.2 24 158-181 11-34 (180)
389 3kjh_A CO dehydrogenase/acetyl 92.2 0.17 5.8E-06 44.5 5.4 43 159-204 2-44 (254)
390 1c9k_A COBU, adenosylcobinamid 92.2 0.13 4.6E-06 43.3 4.4 36 159-201 1-36 (180)
391 2pt7_A CAG-ALFA; ATPase, prote 92.2 0.059 2E-06 50.3 2.4 24 158-181 172-195 (330)
392 2atv_A RERG, RAS-like estrogen 92.2 0.083 2.8E-06 44.7 3.2 25 156-180 27-51 (196)
393 2cjw_A GTP-binding protein GEM 92.2 0.084 2.9E-06 44.8 3.2 22 158-179 7-28 (192)
394 3ch4_B Pmkase, phosphomevalona 92.2 0.096 3.3E-06 45.0 3.6 25 156-180 10-34 (202)
395 3dz8_A RAS-related protein RAB 92.2 0.084 2.9E-06 44.5 3.2 25 157-181 23-47 (191)
396 3llu_A RAS-related GTP-binding 92.2 0.076 2.6E-06 45.0 3.0 24 157-180 20-43 (196)
397 1u0l_A Probable GTPase ENGC; p 92.2 0.12 4.3E-06 47.3 4.6 34 145-181 160-193 (301)
398 3oes_A GTPase rhebl1; small GT 92.1 0.084 2.9E-06 44.9 3.2 26 156-181 23-48 (201)
399 3clv_A RAB5 protein, putative; 92.1 0.085 2.9E-06 44.5 3.2 24 157-180 7-30 (208)
400 1gwn_A RHO-related GTP-binding 92.1 0.085 2.9E-06 45.3 3.2 25 157-181 28-52 (205)
401 2p67_A LAO/AO transport system 92.1 0.098 3.3E-06 49.0 3.8 26 155-180 54-79 (341)
402 2ew1_A RAS-related protein RAB 92.1 0.086 3E-06 45.1 3.2 24 157-180 26-49 (201)
403 4tmk_A Protein (thymidylate ki 92.1 0.19 6.7E-06 43.5 5.5 24 158-181 4-27 (213)
404 2fg5_A RAB-22B, RAS-related pr 92.1 0.087 3E-06 44.5 3.2 25 157-181 23-47 (192)
405 1ksh_A ARF-like protein 2; sma 92.0 0.099 3.4E-06 43.7 3.5 26 155-180 16-41 (186)
406 2qag_B Septin-6, protein NEDD5 92.0 0.068 2.3E-06 51.5 2.7 21 160-180 45-65 (427)
407 1zbd_A Rabphilin-3A; G protein 92.0 0.087 3E-06 44.8 3.1 23 158-180 9-31 (203)
408 3tkl_A RAS-related protein RAB 92.0 0.09 3.1E-06 44.2 3.2 25 157-181 16-40 (196)
409 1zd9_A ADP-ribosylation factor 92.0 0.092 3.2E-06 44.1 3.2 24 158-181 23-46 (188)
410 2gf9_A RAS-related protein RAB 92.0 0.091 3.1E-06 44.1 3.2 25 157-181 22-46 (189)
411 2gf0_A GTP-binding protein DI- 92.0 0.09 3.1E-06 44.4 3.2 24 157-180 8-31 (199)
412 2fh5_B SR-beta, signal recogni 91.9 0.092 3.2E-06 45.1 3.2 24 157-180 7-30 (214)
413 3reg_A RHO-like small GTPase; 91.9 0.094 3.2E-06 44.2 3.2 25 157-181 23-47 (194)
414 1ega_A Protein (GTP-binding pr 91.9 0.098 3.3E-06 48.1 3.5 24 157-180 8-31 (301)
415 4dzz_A Plasmid partitioning pr 91.9 0.093 3.2E-06 44.7 3.2 41 158-201 2-43 (206)
416 2a5j_A RAS-related protein RAB 91.9 0.097 3.3E-06 44.1 3.2 23 158-180 22-44 (191)
417 3lxx_A GTPase IMAP family memb 91.8 0.091 3.1E-06 46.3 3.1 26 156-181 28-53 (239)
418 2rcn_A Probable GTPase ENGC; Y 91.8 0.095 3.2E-06 49.3 3.3 24 158-181 216-239 (358)
419 2b6h_A ADP-ribosylation factor 91.8 0.085 2.9E-06 44.6 2.8 25 155-179 27-51 (192)
420 2dpy_A FLII, flagellum-specifi 91.7 0.096 3.3E-06 50.9 3.4 27 155-181 155-181 (438)
421 2p5s_A RAS and EF-hand domain 91.7 0.1 3.5E-06 44.3 3.2 25 156-180 27-51 (199)
422 1z06_A RAS-related protein RAB 91.7 0.1 3.5E-06 43.8 3.2 24 157-180 20-43 (189)
423 3cwq_A Para family chromosome 91.7 0.22 7.7E-06 42.8 5.4 41 159-203 2-43 (209)
424 1bif_A 6-phosphofructo-2-kinas 91.7 0.11 3.8E-06 50.9 3.9 26 156-181 38-63 (469)
425 1x3s_A RAS-related protein RAB 91.7 0.11 3.6E-06 43.7 3.2 24 158-181 16-39 (195)
426 2q3h_A RAS homolog gene family 91.7 0.095 3.2E-06 44.5 3.0 24 157-180 20-43 (201)
427 2bcg_Y Protein YP2, GTP-bindin 91.6 0.1 3.5E-06 44.5 3.2 24 158-181 9-32 (206)
428 3ice_A Transcription terminati 91.6 0.2 6.8E-06 47.5 5.3 53 147-200 163-216 (422)
429 2o52_A RAS-related protein RAB 91.6 0.095 3.2E-06 44.6 2.9 24 157-180 25-48 (200)
430 2fv8_A H6, RHO-related GTP-bin 91.5 0.11 3.7E-06 44.5 3.2 24 158-181 26-49 (207)
431 2h17_A ADP-ribosylation factor 91.4 0.097 3.3E-06 43.6 2.7 23 158-180 22-44 (181)
432 2atx_A Small GTP binding prote 91.4 0.11 3.9E-06 43.7 3.2 23 158-180 19-41 (194)
433 1yqt_A RNAse L inhibitor; ATP- 91.3 0.11 3.6E-06 52.0 3.3 25 157-181 312-336 (538)
434 3ozx_A RNAse L inhibitor; ATP 91.3 0.096 3.3E-06 52.3 3.0 25 157-181 294-318 (538)
435 2j1l_A RHO-related GTP-binding 91.3 0.1 3.5E-06 45.0 2.9 24 157-180 34-57 (214)
436 3hjn_A DTMP kinase, thymidylat 91.3 0.24 8.3E-06 42.3 5.2 23 159-181 2-24 (197)
437 3k53_A Ferrous iron transport 91.3 0.13 4.5E-06 46.3 3.7 24 157-180 3-26 (271)
438 1ypw_A Transitional endoplasmi 91.3 0.071 2.4E-06 56.0 2.1 46 136-181 477-535 (806)
439 3euj_A Chromosome partition pr 91.3 0.11 3.9E-06 50.9 3.3 22 158-179 30-51 (483)
440 4bas_A ADP-ribosylation factor 91.3 0.093 3.2E-06 44.3 2.5 26 156-181 16-41 (199)
441 2qag_C Septin-7; cell cycle, c 91.2 0.096 3.3E-06 50.5 2.8 22 160-181 34-55 (418)
442 2hup_A RAS-related protein RAB 91.2 0.12 4.1E-06 44.1 3.2 24 157-180 29-52 (201)
443 2j0v_A RAC-like GTP-binding pr 91.2 0.12 4.1E-06 44.3 3.2 23 158-180 10-32 (212)
444 3cph_A RAS-related protein SEC 91.2 0.12 4.2E-06 44.1 3.2 24 157-180 20-43 (213)
445 2g3y_A GTP-binding protein GEM 91.2 0.12 4.1E-06 44.8 3.1 23 157-179 37-59 (211)
446 2gco_A H9, RHO-related GTP-bin 91.2 0.12 4.2E-06 43.9 3.2 23 158-180 26-48 (201)
447 3v9p_A DTMP kinase, thymidylat 91.1 0.093 3.2E-06 46.1 2.4 25 157-181 25-49 (227)
448 1yqt_A RNAse L inhibitor; ATP- 91.1 0.12 3.9E-06 51.7 3.3 25 157-181 47-71 (538)
449 1x6v_B Bifunctional 3'-phospho 91.1 0.14 4.7E-06 51.9 3.9 26 156-181 51-76 (630)
450 2il1_A RAB12; G-protein, GDP, 91.1 0.12 4.1E-06 43.6 3.0 23 158-180 27-49 (192)
451 1f2t_A RAD50 ABC-ATPase; DNA d 91.1 0.17 5.7E-06 41.2 3.8 22 157-178 23-44 (149)
452 2zts_A Putative uncharacterize 91.1 0.13 4.4E-06 45.2 3.3 50 156-209 29-78 (251)
453 2qu8_A Putative nucleolar GTP- 91.0 0.15 5.2E-06 44.4 3.7 25 156-180 28-52 (228)
454 3q3j_B RHO-related GTP-binding 91.0 0.13 4.5E-06 44.3 3.2 25 157-181 27-51 (214)
455 3bk7_A ABC transporter ATP-bin 90.9 0.12 4.2E-06 52.3 3.3 25 157-181 382-406 (607)
456 4dkx_A RAS-related protein RAB 90.9 0.13 4.6E-06 44.6 3.2 21 159-179 15-35 (216)
457 1m8p_A Sulfate adenylyltransfe 90.9 0.19 6.4E-06 50.6 4.7 26 156-181 395-420 (573)
458 2fu5_C RAS-related protein RAB 90.9 0.075 2.6E-06 44.3 1.5 23 158-180 9-31 (183)
459 3j16_B RLI1P; ribosome recycli 90.9 0.12 4.2E-06 52.2 3.3 24 158-181 379-402 (608)
460 3tqf_A HPR(Ser) kinase; transf 90.9 0.17 5.8E-06 42.3 3.6 23 157-179 16-38 (181)
461 3ozx_A RNAse L inhibitor; ATP 90.9 0.12 4.1E-06 51.6 3.2 26 156-181 24-49 (538)
462 2h57_A ADP-ribosylation factor 90.9 0.095 3.2E-06 44.1 2.2 25 157-181 21-45 (190)
463 3fkq_A NTRC-like two-domain pr 90.7 0.17 5.8E-06 48.0 3.9 40 156-198 142-182 (373)
464 1t9h_A YLOQ, probable GTPase E 90.6 0.066 2.2E-06 49.3 1.0 24 157-180 173-196 (307)
465 4hlc_A DTMP kinase, thymidylat 90.6 0.17 5.9E-06 43.6 3.6 24 158-181 3-26 (205)
466 3j16_B RLI1P; ribosome recycli 90.6 0.14 4.6E-06 52.0 3.3 26 156-181 102-127 (608)
467 2f7s_A C25KG, RAS-related prot 90.6 0.13 4.6E-06 44.1 2.9 24 157-180 25-48 (217)
468 3tmk_A Thymidylate kinase; pho 90.6 0.18 6E-06 43.9 3.6 25 157-181 5-29 (216)
469 1mky_A Probable GTP-binding pr 90.6 0.3 1E-05 47.3 5.7 43 139-181 151-204 (439)
470 3b60_A Lipid A export ATP-bind 90.6 0.12 4.2E-06 52.1 3.0 35 156-194 368-402 (582)
471 3def_A T7I23.11 protein; chlor 90.5 0.29 1E-05 43.7 5.1 37 145-181 22-60 (262)
472 3b5x_A Lipid A export ATP-bind 90.5 0.13 4.5E-06 51.9 3.1 35 156-194 368-402 (582)
473 1dek_A Deoxynucleoside monopho 90.4 0.18 6.2E-06 44.6 3.6 23 158-180 2-24 (241)
474 2xtp_A GTPase IMAP family memb 90.4 0.18 6.2E-06 44.9 3.7 25 156-180 21-45 (260)
475 1h65_A Chloroplast outer envel 90.3 0.3 1E-05 43.8 5.2 37 145-181 25-63 (270)
476 2oze_A ORF delta'; para, walke 90.3 0.16 5.3E-06 46.3 3.2 36 145-181 23-61 (298)
477 3iev_A GTP-binding protein ERA 90.3 0.17 5.7E-06 46.6 3.4 25 156-180 9-33 (308)
478 3hdt_A Putative kinase; struct 90.3 0.19 6.5E-06 44.0 3.6 25 157-181 14-38 (223)
479 3cpj_B GTP-binding protein YPT 90.2 0.17 5.8E-06 43.9 3.2 23 158-180 14-36 (223)
480 3bk7_A ABC transporter ATP-bin 90.2 0.14 4.8E-06 51.8 3.0 26 156-181 116-141 (607)
481 1q57_A DNA primase/helicase; d 90.2 0.6 2.1E-05 46.0 7.6 54 156-213 241-294 (503)
482 1zcb_A G alpha I/13; GTP-bindi 90.1 0.19 6.4E-06 47.5 3.6 22 156-177 32-53 (362)
483 2ck3_D ATP synthase subunit be 90.1 0.55 1.9E-05 45.6 6.9 63 148-212 143-207 (482)
484 3lxw_A GTPase IMAP family memb 90.0 0.17 5.8E-06 44.9 3.1 25 157-181 21-45 (247)
485 2gks_A Bifunctional SAT/APS ki 90.0 0.35 1.2E-05 48.3 5.7 26 156-181 371-396 (546)
486 1wf3_A GTP-binding protein; GT 90.0 0.19 6.5E-06 46.1 3.5 24 157-180 7-30 (301)
487 4i1u_A Dephospho-COA kinase; s 90.0 0.19 6.4E-06 43.5 3.2 24 156-179 8-31 (210)
488 3bgw_A DNAB-like replicative h 90.0 0.41 1.4E-05 46.5 6.0 53 156-213 196-248 (444)
489 2oap_1 GSPE-2, type II secreti 89.9 0.27 9.1E-06 48.7 4.7 24 158-181 261-284 (511)
490 2b8t_A Thymidine kinase; deoxy 89.9 0.21 7.2E-06 43.6 3.6 26 156-181 11-36 (223)
491 1fx0_B ATP synthase beta chain 89.9 0.56 1.9E-05 45.8 6.8 62 149-212 156-219 (498)
492 2x77_A ADP-ribosylation factor 89.8 0.13 4.4E-06 43.1 2.0 25 155-179 20-44 (189)
493 2qtf_A Protein HFLX, GTP-bindi 89.7 0.18 6.3E-06 47.6 3.2 26 156-181 178-203 (364)
494 1tf7_A KAIC; homohexamer, hexa 89.6 0.17 5.9E-06 50.3 3.1 20 158-177 40-59 (525)
495 4dhe_A Probable GTP-binding pr 89.6 0.12 4.2E-06 44.5 1.9 26 156-181 28-53 (223)
496 2r6a_A DNAB helicase, replicat 89.5 0.2 6.9E-06 48.8 3.5 52 156-211 202-253 (454)
497 3cf2_A TER ATPase, transitiona 89.5 0.17 5.8E-06 52.8 3.1 46 136-181 477-535 (806)
498 3ea0_A ATPase, para family; al 89.5 0.26 8.7E-06 43.3 3.9 41 156-198 3-44 (245)
499 3t5d_A Septin-7; GTP-binding p 89.5 0.16 5.3E-06 45.9 2.5 23 158-180 9-31 (274)
500 1wcv_1 SOJ, segregation protei 89.4 0.16 5.4E-06 45.3 2.5 39 156-197 5-44 (257)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.6e-34 Score=291.25 Aligned_cols=241 Identities=13% Similarity=0.052 Sum_probs=183.6
Q ss_pred ccchHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHh--hccCCCCCCCEEEEEEeCCCC--CHHHHHHHHHH
Q 043778 139 VGLESIFDKLWRCLTEE---QVGIIGLYGMGSVGKTTLLILINN--KFLDEPNYFDVVIWAVASKVV--EIEKIQESIAK 211 (405)
Q Consensus 139 vGr~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLA~~v~~--~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~ 211 (405)
+||+.++++|.++|..+ +.++|+|+||||+||||||+.+|+ +. +++.+|++++||++++.+ +...++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999754 689999999999999999999998 56 788999999999999985 89999999999
Q ss_pred HhCCCCC-----CCCcccHHHHHHHHHHHHccc-ch--------------------------------------------
Q 043778 212 KIGFFNE-----SWESKTVQEKAVDIFNILSKK-KY-------------------------------------------- 241 (405)
Q Consensus 212 ~l~~~~~-----~~~~~~~~~~~~~l~~~L~~k-r~-------------------------------------------- 241 (405)
+++.... .....+...+...+++.|.++ ||
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~ 289 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIE 289 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEE
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEE
Confidence 9976421 112234566788999999996 87
Q ss_pred ------HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh--hh-----hC--CCCHHHHHHHHHHHhhh-----c--cH
Q 043778 242 ------EDAWKLFEEKVGRDILDSHPNIPELVETVAKECG--AM-----AS--RKTHQEWEYAIEVWRNE-----Y--TL 299 (405)
Q Consensus 242 ------~ds~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~C~--~l-----~~--~~~~~~W~~~l~~l~~~-----~--~l 299 (405)
++||+||.+.++... .++.+.+++++|+++|+ ++ +. ....++|...+....+. + +|
T Consensus 290 l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l 367 (549)
T 2a5y_B 290 VTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECIT 367 (549)
T ss_dssp CCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCS
T ss_pred CCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHH
Confidence 899999999987653 24678899999999999 11 11 11223333323222111 2 89
Q ss_pred hhhhccCCCCccccccc---------------eeHHHH--HHHHHHh--CCCCCCC-chhHHHHHHHHHHHHHHcCcccc
Q 043778 300 VYSYDFLPSDVGRFCLL---------------IDIDQL--VDFWICE--GFLDEYD-GIAARNQGYCIVGTLLHACLLEE 359 (405)
Q Consensus 300 ~~sy~~Lp~~~~k~cfl---------------i~~~~L--i~~Wiae--g~~~~~~-~~~~e~~a~~~~~~Lv~r~ll~~ 359 (405)
.+||++||+ ++|.||+ |+.+.- +++|+|+ ||+...+ +.+.++.++ ||++|+++|||++
T Consensus 368 ~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~ 445 (549)
T 2a5y_B 368 PYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLS 445 (549)
T ss_dssp SSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSE
T ss_pred hcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeE
Confidence 999999999 7999974 221110 8999999 9998876 447788887 9999999999997
Q ss_pred c---CCCeEEeChhHHHHHHHHHccccc
Q 043778 360 E---EGNRVKMHDVIRDMALWIASTFEN 384 (405)
Q Consensus 360 ~---~~~~~~~Hdlvrd~a~~~~~~~~~ 384 (405)
. ...+|+|||+||+||++++.+++.
T Consensus 446 ~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 446 GKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp EECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred ecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 5 356899999999999999887653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=5.3e-25 Score=243.74 Aligned_cols=230 Identities=15% Similarity=0.205 Sum_probs=180.6
Q ss_pred cccccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-CEEEEEEeCCCCC--HHHHHHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF-DVVIWAVASKVVE--IEKIQESIA 210 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F-~~~~wv~vs~~~~--~~~l~~~i~ 210 (405)
+.+|||+.++++|.++|.. ++.++|+|+||||+||||||+++|++......+| +.++||++++..+ ....+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 5689999999999999963 4789999999999999999999998641124555 6888999988543 444577777
Q ss_pred HHhCCCCC--CCCcccHHHHHHHHHHHHccc--ch---------------------------------------------
Q 043778 211 KKIGFFNE--SWESKTVQEKAVDIFNILSKK--KY--------------------------------------------- 241 (405)
Q Consensus 211 ~~l~~~~~--~~~~~~~~~~~~~l~~~L~~k--r~--------------------------------------------- 241 (405)
..++.... .....+.+.+...++..|.++ |+
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~ 283 (1249)
T 3sfz_A 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVE 283 (1249)
T ss_dssp HHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECC
T ss_pred HHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEec
Confidence 77765422 123456788888999999877 76
Q ss_pred -----HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh--hh--------hCCCCHHHHHHHHHHHhhh----------
Q 043778 242 -----EDAWKLFEEKVGRDILDSHPNIPELVETVAKECG--AM--------ASRKTHQEWEYAIEVWRNE---------- 296 (405)
Q Consensus 242 -----~ds~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~C~--~l--------~~~~~~~~W~~~l~~l~~~---------- 296 (405)
++||+||...++... +.+.+++++|+++|+ +| ...++ ..|...++.+...
T Consensus 284 ~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~ 358 (1249)
T 3sfz_A 284 SGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSS 358 (1249)
T ss_dssp SSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTC
T ss_pred CCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccc
Confidence 899999999886443 334567999999998 11 11222 4688888887543
Q ss_pred -----c--cHhhhhccCCCCccccccc----------eeHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHcCcccc
Q 043778 297 -----Y--TLVYSYDFLPSDVGRFCLL----------IDIDQLVDFWICEGFLDEYDGIAARNQGYCIVGTLLHACLLEE 359 (405)
Q Consensus 297 -----~--~l~~sy~~Lp~~~~k~cfl----------i~~~~Li~~Wiaeg~~~~~~~~~~e~~a~~~~~~Lv~r~ll~~ 359 (405)
+ +|.+||+.||+ +.|+||+ |++..++.+|.++ ++.++.+|++|+++|||+.
T Consensus 359 ~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~ 426 (1249)
T 3sfz_A 359 YDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFC 426 (1249)
T ss_dssp TTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEE
T ss_pred cchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEE
Confidence 1 89999999999 5999999 8899999999765 4678899999999999997
Q ss_pred cC---CCeEEeChhHHHHHHHHHccc
Q 043778 360 EE---GNRVKMHDVIRDMALWIASTF 382 (405)
Q Consensus 360 ~~---~~~~~~Hdlvrd~a~~~~~~~ 382 (405)
.. ..+|+|||+||+||+..+.++
T Consensus 427 ~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 427 NRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ecCCCceEEEecHHHHHHHHhhhhHH
Confidence 52 336999999999999997764
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.90 E-value=4.7e-24 Score=222.87 Aligned_cols=214 Identities=14% Similarity=0.169 Sum_probs=162.0
Q ss_pred ccccchHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCE-EEEEEeCCCCCHHHHHHHHHHHhC
Q 043778 137 TIVGLESIFDKLWRCLTE-EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDV-VIWAVASKVVEIEKIQESIAKKIG 214 (405)
Q Consensus 137 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~-~~wv~vs~~~~~~~l~~~i~~~l~ 214 (405)
..|||+.++++|.++|.. ++.++|+|+||||+||||||+.+|++. +++.+|+. ++|+++++.++...++..|+..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 359999999999999986 468899999999999999999999876 67889985 999999999999888888877543
Q ss_pred CCC----CCC-----CcccHHHHHHHHHHHH---cccch-----------------------------------------
Q 043778 215 FFN----ESW-----ESKTVQEKAVDIFNIL---SKKKY----------------------------------------- 241 (405)
Q Consensus 215 ~~~----~~~-----~~~~~~~~~~~l~~~L---~~kr~----------------------------------------- 241 (405)
... ... ...+.+.+...+++.| .++|+
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy 287 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSC
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEE
Confidence 211 000 1123455566677766 45665
Q ss_pred -------------HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh-----------hhhCC-CCHHHHHHHHHHHhhh
Q 043778 242 -------------EDAWKLFEEKVGRDILDSHPNIPELVETVAKECG-----------AMASR-KTHQEWEYAIEVWRNE 296 (405)
Q Consensus 242 -------------~ds~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~C~-----------~l~~~-~~~~~W~~~l~~l~~~ 296 (405)
+|||+||++..+.. .. ++..+| |+ .++.+ .+..+|...- ...
T Consensus 288 ~LeL~d~dL~LS~eEA~eLF~~~~g~~----~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~---~~~ 354 (1221)
T 1vt4_I 288 HISLDHHSMTLTPDEVKSLLLKYLDCR----PQ---DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVN---CDK 354 (1221)
T ss_dssp EEEECSSSSCCCHHHHHHHHHHHHCCC----TT---THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCS---CHH
T ss_pred EecCccccCCcCHHHHHHHHHHHcCCC----HH---HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCC---hhH
Confidence 58999999886432 12 233444 76 22333 3677887531 112
Q ss_pred c--cHhhhhccCCCCcc-ccccc----------eeHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHcCccccc-CC
Q 043778 297 Y--TLVYSYDFLPSDVG-RFCLL----------IDIDQLVDFWICEGFLDEYDGIAARNQGYCIVGTLLHACLLEEE-EG 362 (405)
Q Consensus 297 ~--~l~~sy~~Lp~~~~-k~cfl----------i~~~~Li~~Wiaeg~~~~~~~~~~e~~a~~~~~~Lv~r~ll~~~-~~ 362 (405)
+ +|.+||+.||+ +. |+||+ |+...++.+|+++| ++.++.+|++|+++|||+.. ..
T Consensus 355 I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~~~ 423 (1221)
T 1vt4_I 355 LTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQPKE 423 (1221)
T ss_dssp HHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCSSS
T ss_pred HHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeCCC
Confidence 3 89999999999 58 99999 77889999999987 13588999999999999985 46
Q ss_pred CeEEeChhHHHHH
Q 043778 363 NRVKMHDVIRDMA 375 (405)
Q Consensus 363 ~~~~~Hdlvrd~a 375 (405)
.+|+|||++++++
T Consensus 424 ~rYrMHDLllELr 436 (1221)
T 1vt4_I 424 STISIPSIYLELK 436 (1221)
T ss_dssp SEEBCCCHHHHHH
T ss_pred CEEEehHHHHHHh
Confidence 7899999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.88 E-value=5.9e-22 Score=203.30 Aligned_cols=224 Identities=16% Similarity=0.246 Sum_probs=168.6
Q ss_pred cccccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCC-CCCC-CEEEEEEeCCCCCHHHHHHHH--
Q 043778 136 LTIVGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKFLDE-PNYF-DVVIWAVASKVVEIEKIQESI-- 209 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~-~~~F-~~~~wv~vs~~~~~~~l~~~i-- 209 (405)
+.+|||+.++++|.+.|.. ++.++|+|+||||+||||||..++++. ++ ..+| ++++|++++.. +...++..+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 5689999999999999974 468899999999999999999999865 44 5678 58999999875 333444443
Q ss_pred -HHHhCCCC--CCCCcccHHHHHHHHHHHHcc--cch-------------------------------------------
Q 043778 210 -AKKIGFFN--ESWESKTVQEKAVDIFNILSK--KKY------------------------------------------- 241 (405)
Q Consensus 210 -~~~l~~~~--~~~~~~~~~~~~~~l~~~L~~--kr~------------------------------------------- 241 (405)
+..++... ......+.......++..|.+ +++
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v~ 281 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVP 281 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEEEEE
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCceEee
Confidence 44554211 112344566777788888876 444
Q ss_pred -------HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh-----------hhhCCCCHHHHHHHHHHHhhh-------
Q 043778 242 -------EDAWKLFEEKVGRDILDSHPNIPELVETVAKECG-----------AMASRKTHQEWEYAIEVWRNE------- 296 (405)
Q Consensus 242 -------~ds~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~C~-----------~l~~~~~~~~W~~~l~~l~~~------- 296 (405)
+||++||...++... ....+.+.+|+++|+ .+... ..+|...++.+...
T Consensus 282 ~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~ 355 (591)
T 1z6t_A 282 VESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRK 355 (591)
T ss_dssp CCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSC
T ss_pred cCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhh
Confidence 899999999987532 122357889999998 12222 23688888877542
Q ss_pred --------c--cHhhhhccCCCCccccccc----------eeHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHcCc
Q 043778 297 --------Y--TLVYSYDFLPSDVGRFCLL----------IDIDQLVDFWICEGFLDEYDGIAARNQGYCIVGTLLHACL 356 (405)
Q Consensus 297 --------~--~l~~sy~~Lp~~~~k~cfl----------i~~~~Li~~Wiaeg~~~~~~~~~~e~~a~~~~~~Lv~r~l 356 (405)
+ ++..||+.||+ +.|.||+ |+...+..+|.++ .+.+..++++|+++||
T Consensus 356 ~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 356 SSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSL 423 (591)
T ss_dssp CCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTS
T ss_pred ccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcC
Confidence 2 88999999999 5999998 6778899999654 3457889999999999
Q ss_pred cccc---CCCeEEeChhHHHHHHHHH
Q 043778 357 LEEE---EGNRVKMHDVIRDMALWIA 379 (405)
Q Consensus 357 l~~~---~~~~~~~Hdlvrd~a~~~~ 379 (405)
|+.. ...+|+||+++|++++...
T Consensus 424 l~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 424 LFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp SEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred eEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9863 3447999999999999873
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=4e-16 Score=123.98 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=74.4
Q ss_pred ccccchhhhhhhHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhChhhHHHHHHHHHHHHHHHHH
Q 043778 7 FSCDSNITRCPDCTVRKASSIRDLQKNLEALPRELQKLVETRNDVRIRVIVAEQQK-MKRLEQVEPWFSRVQDAESEVAK 85 (405)
Q Consensus 7 ~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~Wl~~l~~~ayd~eD 85 (405)
++|+.+++||.+++.+|+.++.+++++++.|+++|+.|+++|.+ ++.+. ...+++++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999 66652 23478999999999999999999
Q ss_pred HHHHHHHHhh
Q 043778 86 LMLERNWELK 95 (405)
Q Consensus 86 ~ld~~~~~~~ 95 (405)
+||+|.++..
T Consensus 74 ~iD~f~~~~~ 83 (115)
T 3qfl_A 74 VVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.19 E-value=4.6e-06 Score=80.77 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=68.3
Q ss_pred cccccchHHHHHHHHHh-h----c--CCceEEEE--EcCCCCcHHHHHHHHHhhccCCC---CCCC-EEEEEEeCCCCCH
Q 043778 136 LTIVGLESIFDKLWRCL-T----E--EQVGIIGL--YGMGSVGKTTLLILINNKFLDEP---NYFD-VVIWAVASKVVEI 202 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L-~----~--~~~~vi~I--~G~~GiGKTtLA~~v~~~~~~~~---~~F~-~~~wv~vs~~~~~ 202 (405)
..++||+.+++.|.+.| . + .....+.| +|++|+||||||+.+++.. ... ..|+ ..+|+......+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence 56899999999999888 4 2 24556666 9999999999999999865 211 1232 4577776667788
Q ss_pred HHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHc
Q 043778 203 EKIQESIAKKIGFFNESWESKTVQEKAVDIFNILS 237 (405)
Q Consensus 203 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 237 (405)
..++..++.+++..... ...+.......+.+.|.
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~ 134 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLY 134 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHH
Confidence 88999999988654211 12233444455555554
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.16 E-value=4.5e-06 Score=80.07 Aligned_cols=78 Identities=18% Similarity=0.036 Sum_probs=56.5
Q ss_pred cccccchHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCC---CCC--CCEEEEEEeCCCC-CHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTE----EQVGIIGLYGMGSVGKTTLLILINNKFLDE---PNY--FDVVIWAVASKVV-EIEKI 205 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~---~~~--F~~~~wv~vs~~~-~~~~l 205 (405)
+.++||+.+++++..+|.. +..+.+.|+|++|+||||||+.+++...+. ... ....+|+..+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5689999999999877753 356789999999999999999999854110 011 2356777765555 66667
Q ss_pred HHHHHHHh
Q 043778 206 QESIAKKI 213 (405)
Q Consensus 206 ~~~i~~~l 213 (405)
+..++..+
T Consensus 100 ~~~l~~~l 107 (384)
T 2qby_B 100 LSSLAGKL 107 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776666
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.13 E-value=3.3e-06 Score=79.74 Aligned_cols=68 Identities=25% Similarity=0.240 Sum_probs=53.1
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCC------CHHHHHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVV------EIEKIQESI 209 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~------~~~~l~~~i 209 (405)
+.++||+.+++.|.+.+..+ +++.|+|++|+|||||++.+.+.. . .+|+...... +...++..+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHH
Confidence 67899999999999988764 799999999999999999999853 1 6777754332 556666666
Q ss_pred HHHh
Q 043778 210 AKKI 213 (405)
Q Consensus 210 ~~~l 213 (405)
...+
T Consensus 82 ~~~l 85 (350)
T 2qen_A 82 QSTI 85 (350)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 6554
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.12 E-value=3.5e-06 Score=80.59 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=54.0
Q ss_pred cccccchHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---CEEEEEEeCCCCCHHHHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTE----EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF---DVVIWAVASKVVEIEKIQES 208 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F---~~~~wv~vs~~~~~~~l~~~ 208 (405)
+.++||+.+++.+.+++.. +....+.|+|++|+||||||+.+++.. ...+ ...+|+......+...++..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL---HKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH---HHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH---HHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 6789999999999998873 456789999999999999999999854 2222 24567765444444445555
Q ss_pred HHHHh
Q 043778 209 IAKKI 213 (405)
Q Consensus 209 i~~~l 213 (405)
++.++
T Consensus 97 i~~~l 101 (386)
T 2qby_A 97 LLESL 101 (386)
T ss_dssp HTTTT
T ss_pred HHHHh
Confidence 44444
No 10
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.11 E-value=9.7e-06 Score=75.86 Aligned_cols=46 Identities=30% Similarity=0.392 Sum_probs=38.1
Q ss_pred cccccchHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-----EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|++..++.+...+.. .....+.|+|++|+|||+||+.+++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999988888877752 244678899999999999999999855
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.11 E-value=2.4e-05 Score=74.94 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=60.0
Q ss_pred cccccchHHHHHHHHHhhc----CCce--EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTE----EQVG--IIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESI 209 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 209 (405)
+.++||+.+++.+..++.. +... .+.|+|++|+|||||++.+.+.. ..... ...+|+..+...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTT-ARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcC-eeEEEEeCccCCCHHHHHHHH
Confidence 5689999999999988864 3334 89999999999999999999866 22111 256677766777778888888
Q ss_pred HHHhCC
Q 043778 210 AKKIGF 215 (405)
Q Consensus 210 ~~~l~~ 215 (405)
+..++.
T Consensus 95 ~~~l~~ 100 (389)
T 1fnn_A 95 ARSLNI 100 (389)
T ss_dssp HHHTTC
T ss_pred HHHhCc
Confidence 887754
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.08 E-value=1.1e-05 Score=77.07 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=58.4
Q ss_pred cccccchHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCC----CCCCEEEEEEeCCCCCHHHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTE----EQVGIIGLYGMGSVGKTTLLILINNKFLDEP----NYFDVVIWAVASKVVEIEKIQE 207 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~----~~F~~~~wv~vs~~~~~~~l~~ 207 (405)
+.++||+..++.+..++.. .....+.|+|++|+||||||+.+++.. ... ..--..+|+......+...++.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL-EARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH-HHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH-HHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 6789999999999998843 456789999999999999999999854 111 0012456777666667777777
Q ss_pred HHHHHhCC
Q 043778 208 SIAKKIGF 215 (405)
Q Consensus 208 ~i~~~l~~ 215 (405)
.++.+++.
T Consensus 98 ~l~~~l~~ 105 (387)
T 2v1u_A 98 AIAEAVGV 105 (387)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhCC
Confidence 77766654
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.01 E-value=1.5e-05 Score=75.33 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=50.5
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCC-----CCHHHHHHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKV-----VEIEKIQESIA 210 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~-----~~~~~l~~~i~ 210 (405)
+.++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.. . . ..+|+..... .+...++..+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 678999999999999 765 699999999999999999999865 2 2 2578876542 34455554444
Q ss_pred HH
Q 043778 211 KK 212 (405)
Q Consensus 211 ~~ 212 (405)
..
T Consensus 83 ~~ 84 (357)
T 2fna_A 83 KE 84 (357)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 14
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.88 E-value=1.5e-05 Score=67.90 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=40.8
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|++..++.+.+.+.......+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987666778999999999999999998854
No 15
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.78 E-value=2.1e-05 Score=66.76 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=40.7
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|++..++.+.+.+.......+.|+|++|+|||+||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987666778999999999999999998854
No 16
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.71 E-value=6.3e-05 Score=65.60 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=40.2
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|++..++.+.+++.......+.|+|++|+|||+||+.+++..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999987655569999999999999999998853
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.57 E-value=6.9e-05 Score=66.22 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=40.0
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|++..++.+..++..+. .+.+.|+|++|+||||||+.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999987653 4689999999999999999998865
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00022 Score=66.35 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=58.1
Q ss_pred cccccchHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCC--CCC--EEEEEEeCCCCCHHHHHH
Q 043778 136 LTIVGLESIFDKLWRCLTE----EQVGIIGLYGMGSVGKTTLLILINNKFLDEPN--YFD--VVIWAVASKVVEIEKIQE 207 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~--~F~--~~~wv~vs~~~~~~~l~~ 207 (405)
..+.||+++.++|...|.. +....+-|+|++|+|||++++.+.+...+... ... ..+++.-....+...++.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 3479999999999877753 46778999999999999999999986621111 111 345555556677888999
Q ss_pred HHHHHhCC
Q 043778 208 SIAKKIGF 215 (405)
Q Consensus 208 ~i~~~l~~ 215 (405)
.|++++..
T Consensus 100 ~I~~~L~g 107 (318)
T 3te6_A 100 KIWFAISK 107 (318)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 99999954
No 19
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.24 E-value=0.00036 Score=57.07 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=35.1
Q ss_pred ccccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 137 TIVGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 137 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++|......++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 468999888888887753 233457899999999999999999854
No 20
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.23 E-value=0.00028 Score=65.57 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=40.1
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|++..++.+.+++..+....+.|+|++|+||||+|+.+++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5689999999999999987755459999999999999999998853
No 21
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.00031 Score=65.40 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=40.2
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|++..++.+..++..+....+.++|++|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999999987765569999999999999999999853
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.16 E-value=0.00049 Score=62.89 Aligned_cols=46 Identities=28% Similarity=0.275 Sum_probs=38.4
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+..++.|.+.+.. ....-+.|+|++|+|||+||+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999998887642 245679999999999999999999854
No 23
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.09 E-value=0.00042 Score=68.35 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=39.7
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|++..++.+...|......-+.++|++|+|||+||+.+.+..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999977655567899999999999999998753
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.00 E-value=0.00073 Score=59.68 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=39.8
Q ss_pred cccccc---hHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeC
Q 043778 136 LTIVGL---ESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVAS 197 (405)
Q Consensus 136 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs 197 (405)
++++|. +..++.+..++..+....+.|+|++|+||||||+.+.+.. . .....+.|+..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~-~--~~~~~~~~~~~~ 89 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA-N--ELERRSFYIPLG 89 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEEEGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEHH
Confidence 345652 3556666666655566789999999999999999999865 2 222345566544
No 25
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.00051 Score=64.74 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=39.3
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|++..++.+...+..+....+.++|++|+||||+|+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987654458999999999999999998753
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.91 E-value=0.00099 Score=61.25 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=38.0
Q ss_pred cccccchHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.+.+.+.. ...+.+.|+|++|+||||||+.+.+..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5689999998888887632 135688999999999999999999854
No 27
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.89 E-value=0.00064 Score=62.97 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=39.5
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|++...+.+.+++..+....+.++|++|+|||++|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 4589999999999988877655558999999999999999998753
No 28
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.88 E-value=0.00094 Score=63.39 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=39.7
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|++..++.+.+.+..+. .+.+.|+|++|+||||+|+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999987654 4678999999999999999998755
No 29
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.83 E-value=0.0011 Score=61.18 Aligned_cols=46 Identities=28% Similarity=0.260 Sum_probs=37.3
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+..++.|.+.+.. ...+.|.|+|++|+|||+||+.+++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4688998888887776642 245679999999999999999999955
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.0011 Score=66.20 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=39.4
Q ss_pred cccccchHHHHHHHHHhhc-----------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-----------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|++..++.+.++|.. +..+.+.|+|++|+||||||+.+.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999864 134689999999999999999999854
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.83 E-value=0.0012 Score=61.08 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=35.3
Q ss_pred ccccchHHHHHHHHHhh---------------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 137 TIVGLESIFDKLWRCLT---------------EEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 137 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++|.+..++.|.+.+. ......+.|+|++|+|||+||+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 58999888888776553 2244578999999999999999887654
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.83 E-value=0.0012 Score=59.22 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=35.3
Q ss_pred cccccchHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT---E---------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.+.+.+. . ...+-+.|+|++|+|||+||+.+++..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467998887777765542 1 134568899999999999999999865
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.82 E-value=0.0011 Score=62.09 Aligned_cols=46 Identities=30% Similarity=0.309 Sum_probs=38.6
Q ss_pred cccccchHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-----EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|++..++.+..++.. .....+.|+|++|+|||+||+.+.+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5689999999988888763 345678999999999999999998854
No 34
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.80 E-value=0.00096 Score=65.29 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=38.9
Q ss_pred cccccchHHH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIF---DKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..+ ..|...+..+....+.|+|++|+||||||+.+.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578888777 677777877777889999999999999999999854
No 35
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.73 E-value=0.00054 Score=55.89 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=33.7
Q ss_pred cccccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-.++|.+..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578988888888877653 233457799999999999999999844
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.72 E-value=0.0016 Score=61.72 Aligned_cols=46 Identities=22% Similarity=0.109 Sum_probs=38.2
Q ss_pred cccccchHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.|.+.+.. ...+.|.|+|++|+|||+||+.+++..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999988887642 246689999999999999999999854
No 37
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.70 E-value=0.002 Score=55.74 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=32.4
Q ss_pred chHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 141 LESIFDKLWRCLTE---EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 141 r~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|+..++.|.+.+.. ....+|+|.|++|+|||||++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566777777764 356799999999999999999998743
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.68 E-value=0.0015 Score=60.13 Aligned_cols=46 Identities=20% Similarity=0.118 Sum_probs=37.8
Q ss_pred cccccchHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE--------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|.+..++.+...+.. ....-+.++|++|+|||+||+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999988888877753 235578899999999999999999865
No 39
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.00095 Score=63.01 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=37.4
Q ss_pred cccccchHHHHHHHHHh-hcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 136 LTIVGLESIFDKLWRCL-TEEQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.+++|.+...+.+.+++ ..+....+.|+|++|+||||||+.+.+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999988888 5554333999999999999999998874
No 40
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.67 E-value=0.0014 Score=68.66 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+.++|++..++.+...|......-+.++|++|+|||++|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998765556789999999999999999875
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.66 E-value=0.0018 Score=61.34 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=36.2
Q ss_pred cccccchHHHHH---HHHHhhcCC--ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDK---LWRCLTEEQ--VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|++...+. +.+.+..+. .+.+.|+|++|+|||+||+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999887665 445555443 3589999999999999999999866
No 42
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.65 E-value=0.0015 Score=55.30 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 142 ESIFDKLWRCLTE---EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 142 ~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....+.+.+++.+ .....+.|+|++|+||||||+.+++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444444433 245789999999999999999999855
No 43
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.63 E-value=0.0027 Score=54.68 Aligned_cols=50 Identities=24% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcC----CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEe
Q 043778 144 IFDKLWRCLTEE----QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVA 196 (405)
Q Consensus 144 ~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~v 196 (405)
..+.+.+++... ....+.|+|++|+|||+||+.+++.. . .....++|++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~ 90 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEh
Confidence 444555555433 12789999999999999999999866 2 22334556643
No 44
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.62 E-value=0.0018 Score=56.22 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=29.7
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 144 IFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 144 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-.++|.+.+.. +...+|+|+|+.|+|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556666553 356799999999999999999998754
No 45
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.61 E-value=0.0014 Score=69.69 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=39.8
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++||+.++..+.+.|......-+.++|++|+||||||+.+.+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987655667899999999999999998743
No 46
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.002 Score=60.58 Aligned_cols=46 Identities=15% Similarity=0.348 Sum_probs=38.2
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.|...+..+....+.++|++|+||||+|+.+.+..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568888888888888877655448999999999999999998854
No 47
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.60 E-value=0.0024 Score=59.69 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=36.7
Q ss_pred cccccchHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+..++.|.+.+.. ...+-|.++|++|+|||+||+.+++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 5688999888888776531 134679999999999999999999854
No 48
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.59 E-value=0.0024 Score=59.59 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=37.7
Q ss_pred cccccchHHHHHHHHHhh----------c--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT----------E--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.|.+.+. . ...+-|.++|++|+|||+||+.+.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 568999999999888773 1 134578999999999999999999855
No 49
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.59 E-value=0.002 Score=57.95 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=34.6
Q ss_pred cccccchHHHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCL---TE---------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+..++.+.+.+ .. ...+-+.|+|++|+||||||+.+.+..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 56889887777665543 22 123458899999999999999999865
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.54 E-value=0.0023 Score=67.07 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+.++||+..++.+.+.|......-+.++|++|+|||++|+.+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999998766667789999999999999999874
No 51
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.54 E-value=0.0017 Score=61.02 Aligned_cols=46 Identities=30% Similarity=0.356 Sum_probs=35.3
Q ss_pred cccccchHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-----EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|.+..++.+...+.. .....+.++|++|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4467877777776655542 245679999999999999999999854
No 52
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.43 E-value=0.0016 Score=54.37 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.+|.|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 53
No 53
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.40 E-value=0.0037 Score=56.63 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=33.7
Q ss_pred cccccchHHHHHHHH-------Hhh---cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWR-------CLT---EEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.....+++.. .+. ......+.|+|++|+|||+||+.+.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 346676666555554 332 3356789999999999999999999854
No 54
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.39 E-value=0.0026 Score=57.41 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=33.9
Q ss_pred cccccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|.+....++.+.+.. ....-|.|+|.+|+|||+||+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4578998888888776643 233567899999999999999999854
No 55
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.37 E-value=0.0037 Score=59.94 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=37.9
Q ss_pred cccccchHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.|...+.. ...+-|.|+|++|+|||+||+.+.+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999998887731 134679999999999999999998854
No 56
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.36 E-value=0.0035 Score=58.33 Aligned_cols=46 Identities=13% Similarity=-0.065 Sum_probs=39.2
Q ss_pred cccccchHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+...+.+.+++..+. .+++.+.|++|+|||++|+.+.+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 568999999999999998664 4677888889999999999999854
No 57
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.36 E-value=0.0024 Score=58.90 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=37.3
Q ss_pred cccccchHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 45789888888888777542 23589999999999999999999854
No 58
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.31 E-value=0.0022 Score=53.44 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998854
No 59
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.30 E-value=0.0023 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999854
No 60
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.30 E-value=0.0038 Score=59.13 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=37.1
Q ss_pred cccccchHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.|.+.+.. ...+-|.++|++|+|||+||+.+++..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999988888877631 123468899999999999999999965
No 61
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.29 E-value=0.0044 Score=57.35 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=36.9
Q ss_pred cccccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|......++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3578998888888887754 344567899999999999999999854
No 62
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.29 E-value=0.0023 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...+|+|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999873
No 63
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0023 Score=54.20 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 64
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.27 E-value=0.0026 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.132 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 65
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.26 E-value=0.0031 Score=54.36 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 154 EEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.....+|+|+|++|+|||||++.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999999998755
No 66
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.22 E-value=0.0023 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|+|++|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999854
No 67
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.21 E-value=0.0051 Score=60.14 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=37.4
Q ss_pred cccccchHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+..++.|.+.+.. ...+-|.++|++|+|||+||+.+++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999888888877631 234679999999999999999999854
No 68
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.18 E-value=0.0019 Score=58.43 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=34.1
Q ss_pred cccccchHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT---E---------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+...+.+.+.+. . ...+-+.|+|++|+|||+||+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 457888877666665543 1 123347799999999999999999865
No 69
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.15 E-value=0.0029 Score=54.46 Aligned_cols=26 Identities=35% Similarity=0.224 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|+|++|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999854
No 70
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.14 E-value=0.0033 Score=54.19 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 355799999999999999999998743
No 71
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.14 E-value=0.0057 Score=56.12 Aligned_cols=26 Identities=27% Similarity=0.143 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|..|+||||||+.+....
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999987754
No 72
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.12 E-value=0.0026 Score=52.25 Aligned_cols=57 Identities=16% Similarity=0.039 Sum_probs=35.2
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
+.++|.+... +..|..-....++|+|+.|+|||||++.+++.. ... .+ ..+++...+
T Consensus 18 ~f~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 18 KFLGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQA-LEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCCSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHH-HTT-TC-CEEEEETTT
T ss_pred hcCcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHH-Hhc-CC-cEEEEcHHH
Confidence 3345554433 333322245689999999999999999999866 321 11 255665443
No 73
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.07 E-value=0.0034 Score=54.06 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998743
No 74
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0052 Score=59.53 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=37.3
Q ss_pred cccccchHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT----E---------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++.|.+..+++|.+.+. . ..++-|.++|++|.|||.||+++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 567889888888877643 2 146789999999999999999999965
No 75
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0057 Score=59.29 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=36.9
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++.|.+..+++|.+.+.- ..++-|.++|++|.|||+||+++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677888888877765531 146789999999999999999999965
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.02 E-value=0.0051 Score=55.99 Aligned_cols=46 Identities=26% Similarity=0.182 Sum_probs=32.9
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.|.++.++.|.+.+.. .-.+-+.++|++|+||||||+.+.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4567888777777665421 112239999999999999999999855
No 77
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.02 E-value=0.0041 Score=52.17 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998743
No 78
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.01 E-value=0.026 Score=49.65 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPN----YFDVVIWAVASKVVEIEKIQESIAKKIG 214 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 214 (405)
.-.++.|+|++|+|||||+..+.... .... .-..++|++....++...+. .++..++
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g 83 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYG 83 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcC
Confidence 45699999999999999999998743 1111 13578899876655555443 3444554
No 79
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.0055 Score=59.30 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=37.0
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++.|.+..+++|.+.+.- ..++-|.++|++|+|||+||+++.+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678888888887776531 145679999999999999999999966
No 80
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.01 E-value=0.0039 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.|+|++|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999854
No 81
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.01 E-value=0.0045 Score=57.80 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=36.6
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.+...+..+ .-+.++|++|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46789998888888877664 357889999999999999998844
No 82
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.01 E-value=0.004 Score=57.89 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++.+||+|.|.|||||||.+..+.--.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 478999999999999999888876544
No 83
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.00 E-value=0.0034 Score=54.13 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|.|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998854
No 84
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.00 E-value=0.0078 Score=52.59 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 143 SIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 143 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+.+...+.......|+|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455555555577899999999999999999998754
No 85
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.99 E-value=0.0044 Score=53.70 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998854
No 86
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.99 E-value=0.0041 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998865
No 87
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.98 E-value=0.0036 Score=53.30 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998744
No 88
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.95 E-value=0.0049 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
No 89
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.94 E-value=0.0046 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 90
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.94 E-value=0.0046 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.212 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..+|+|+|++|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999873
No 91
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.92 E-value=0.01 Score=55.26 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 144 IFDKLWRCLTEE--QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 144 ~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....+...+..+ ....+.|+|++|+||||||+.+++..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 344445555443 34678999999999999999999855
No 92
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.91 E-value=0.0063 Score=53.03 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 139 VGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 139 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-+.....+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555566665555578899999999999999999988754
No 93
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.91 E-value=0.0039 Score=52.33 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
...+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999998664
No 94
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.91 E-value=0.0048 Score=53.57 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999843
No 95
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.91 E-value=0.0043 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|+|++|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 96
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.91 E-value=0.0045 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998754
No 97
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.90 E-value=0.0047 Score=52.35 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 98
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.89 E-value=0.0054 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998755
No 99
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.88 E-value=0.0043 Score=53.62 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999998754
No 100
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.88 E-value=0.0046 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999865
No 101
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.86 E-value=0.01 Score=52.97 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=32.1
Q ss_pred cccccchHHHHHHHHHhh---cC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT---EE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+....++.+... .. -.+-+.|+|++|+|||||++.+.+..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 457887766555544322 10 12238999999999999999999865
No 102
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.86 E-value=0.0047 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 103
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0054 Score=52.13 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 104
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.84 E-value=0.0049 Score=51.97 Aligned_cols=25 Identities=40% Similarity=0.276 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|.|.|++|+||||+++.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
No 105
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.0063 Score=58.20 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=36.6
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++.|.+..+++|.+.+.- ..++-|.++|++|.|||.||+++.+..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4577888888887765531 145778999999999999999999965
No 106
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.83 E-value=0.0086 Score=54.86 Aligned_cols=26 Identities=27% Similarity=0.129 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998743
No 107
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.83 E-value=0.0044 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998754
No 108
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.83 E-value=0.0061 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 109
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.81 E-value=0.0098 Score=55.30 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|.|+.|+|||||++.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998754
No 110
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.81 E-value=0.0087 Score=56.71 Aligned_cols=45 Identities=22% Similarity=0.119 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHhh-------------c--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 137 TIVGLESIFDKLWRCLT-------------E--EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 137 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46898888888887772 1 134578999999999999999999854
No 111
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.79 E-value=0.0056 Score=55.00 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.|.|++|+||||||+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998754
No 112
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.78 E-value=0.006 Score=54.65 Aligned_cols=26 Identities=23% Similarity=0.292 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|.|++|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998744
No 113
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.78 E-value=0.011 Score=55.43 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=30.6
Q ss_pred ccchHHHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 139 VGLESIFDKLWRCLT----EEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 139 vGr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++.+.-.+.+++.+. .+....|.|+|++|+||||+++.+....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344455555665553 3355679999999999999999887643
No 114
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.78 E-value=0.006 Score=52.76 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...+|+|+|++|+||||||+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999873
No 115
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.78 E-value=0.0056 Score=50.94 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999855
No 116
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.77 E-value=0.0048 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|.|++|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999855
No 117
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.77 E-value=0.0043 Score=58.24 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=33.8
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|.+.....+...+..+...-+.|+|++|+|||+||+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4588988765554444443333348899999999999999999855
No 118
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.74 E-value=0.0058 Score=52.73 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 119
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.74 E-value=0.0062 Score=51.91 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|.|++|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 120
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.73 E-value=0.011 Score=57.91 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=35.4
Q ss_pred cccccchHHHHHHHHH---hhcC--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRC---LTEE--QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~---L~~~--~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.+... +..+ ..+-+.++|++|+|||+||+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5689998887755443 3333 33578899999999999999999866
No 121
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.72 E-value=0.0093 Score=59.00 Aligned_cols=44 Identities=9% Similarity=0.000 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.+...+..+ .-|.++|++|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 56799998888888777654 367899999999999999998854
No 122
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.71 E-value=0.011 Score=58.31 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=37.4
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..+++|.+.+.. ....-|.|+|++|+|||+||+.+.+..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999888888877642 245578999999999999999998854
No 123
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.71 E-value=0.0079 Score=53.92 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhhcC-----CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 142 ESIFDKLWRCLTEE-----QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 142 ~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+...+.+...+..+ ...+|.|+|++|+||||+|+.+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 33444454444432 46789999999999999999998854
No 124
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.71 E-value=0.013 Score=53.26 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=32.6
Q ss_pred cccccchHHHHHHHHHhh---cC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT---EE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++|.+....++.+... .. -.+-+.|+|++|+|||||++.+.+..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 567888766655554332 10 11238999999999999999999865
No 125
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.70 E-value=0.0061 Score=54.33 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|++|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999644
No 126
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.70 E-value=0.011 Score=56.28 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=35.3
Q ss_pred cccccchHHHHHHHHHhhc------------------------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------------------------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.|...+.. .....+.++|++|+|||++|+.+.+..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578888888777766620 124568899999999999999999854
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.69 E-value=0.014 Score=56.82 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+......++ ...+.|+|++|+||||||+.+++..
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444433 6789999999999999999999854
No 128
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.68 E-value=0.0069 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...+|.|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999884
No 129
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.67 E-value=0.0053 Score=51.94 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998854
No 130
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.66 E-value=0.0069 Score=51.20 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.+.|++|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998744
No 131
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.65 E-value=0.0075 Score=52.03 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999866
No 132
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.64 E-value=0.0076 Score=51.81 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|.|++|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999744
No 133
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.63 E-value=0.0069 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999854
No 134
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.63 E-value=0.0079 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+..+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688899999999999999999966
No 135
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.62 E-value=0.0073 Score=56.04 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|+.|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 56799999999999999999998754
No 136
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.61 E-value=0.0069 Score=52.46 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999998854
No 137
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0091 Score=57.99 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=36.9
Q ss_pred cccccchHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT----E---------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++.|.+..+++|.+.+. . ..++-|.++|++|.|||+||+.+.+..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 457888888888876543 1 246789999999999999999999965
No 138
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.58 E-value=0.0063 Score=50.76 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999854
No 139
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.57 E-value=0.0062 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998843
No 140
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.55 E-value=0.0082 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998854
No 141
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.55 E-value=0.0083 Score=51.63 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999754
No 142
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.55 E-value=0.0085 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...+|+|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999874
No 143
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.53 E-value=0.007 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998743
No 144
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.52 E-value=0.0079 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998744
No 145
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.52 E-value=0.0085 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.+||.|.|++|+||||.|+.+....
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999865
No 146
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.50 E-value=0.048 Score=47.44 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC----CCCCEEEEEEeCCCCCH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEP----NYFDVVIWAVASKVVEI 202 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~----~~F~~~~wv~vs~~~~~ 202 (405)
.-.+++|+|++|+|||||++.+.... ... ..-...+|+.-...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCCCCH
Confidence 45799999999999999999998643 211 12346788875444443
No 147
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.50 E-value=0.0083 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999854
No 148
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.49 E-value=0.0086 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|.|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44589999999999999999998854
No 149
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.49 E-value=0.028 Score=48.60 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQ 206 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 206 (405)
.-.++.|+|.+|+|||||+..+.. . . -..++|++....++...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHH
Confidence 446999999999999999999987 2 1 1467888876655655544
No 150
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.012 Score=56.52 Aligned_cols=46 Identities=28% Similarity=0.315 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT----E---------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++-|.++.+++|.+.+. . ...+-|.++|++|.|||.||+++.+..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 456788888887776543 1 145789999999999999999999965
No 151
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.46 E-value=0.0092 Score=53.74 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 152
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.43 E-value=0.0081 Score=53.87 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999744
No 153
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.42 E-value=0.0095 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|.|+.|+||||+++.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 154
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.42 E-value=0.0096 Score=51.06 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...+|+|.|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999874
No 155
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.40 E-value=0.0096 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998754
No 156
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.39 E-value=0.0061 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=18.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998754
No 157
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.35 E-value=0.0095 Score=52.24 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999999854
No 158
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.35 E-value=0.005 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|.|+.|+||||+++.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 379999999999999999998754
No 159
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.34 E-value=0.011 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.146 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4569999999999999999999874
No 160
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.31 E-value=0.018 Score=56.63 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=34.3
Q ss_pred cccccchHHHHHHHHHh---hcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCL---TEE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++++.+.+ ... -.+-|.|+|++|+|||+||+.+.+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 56889887766666543 221 23458899999999999999999855
No 161
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.30 E-value=0.061 Score=50.65 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CcccHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIGFFNESW---ESKTVQEKAVDI 232 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 232 (405)
.-.++.|.|++|+||||||..+.... . ..=..++|++....++.. .+..++...... ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~-~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA-Q--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 45799999999999999999998754 2 111347888877766654 455555432211 123444544555
Q ss_pred HHHHc
Q 043778 233 FNILS 237 (405)
Q Consensus 233 ~~~L~ 237 (405)
...++
T Consensus 132 ~~l~~ 136 (356)
T 3hr8_A 132 DELVR 136 (356)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 54444
No 162
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.30 E-value=0.011 Score=49.46 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+++|+|..|+|||||+..+....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998754
No 163
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.30 E-value=0.02 Score=50.94 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|.|++|+||||+|+.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998744
No 164
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.29 E-value=0.064 Score=49.84 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNY----FDVVIWAVASKVVEIEKIQESIAKKIGF 215 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~----F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 215 (405)
.-.++.|+|.+|+||||||..+.... ..... -..++|++....++...+.. ++..++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~ 167 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGL 167 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCC
Confidence 45699999999999999999988754 21110 24789999888777776654 3455543
No 165
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.28 E-value=0.011 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998854
No 166
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.25 E-value=0.012 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..+|+|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999983
No 167
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.25 E-value=0.011 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 168
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.23 E-value=0.012 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998855
No 169
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.21 E-value=0.0069 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 170
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.20 E-value=0.013 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 171
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.20 E-value=0.014 Score=49.16 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998743
No 172
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.20 E-value=0.011 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999744
No 173
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.19 E-value=0.012 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998744
No 174
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.18 E-value=0.013 Score=54.17 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|++|+|||||+..+..-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998755
No 175
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.16 E-value=0.08 Score=49.63 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPN----YFDVVIWAVASKVVEIEKIQESIAKKIGF 215 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 215 (405)
.-.++.|.|.+|+||||||..+.... .... .-..++|++....++...+.. ++..++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 45799999999999999999988753 2111 124788999888777776554 3445543
No 176
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.13 E-value=0.01 Score=62.36 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..+++|.+++.. .....|.|+|++|+||||||+.+.+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4578988888887776642 234579999999999999999999843
No 177
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.11 E-value=0.011 Score=50.52 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|+|+.|+|||||.+.+....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 378999999999999999988754
No 178
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.08 E-value=0.087 Score=50.48 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=38.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPN----YFDVVIWAVASKVVEIEKIQESIAKKIGF 215 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 215 (405)
.-.++.|+|++|+|||||+..+.-.. .... .-..++|++....+....+. .++..++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~-~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC-QIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-ccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 45699999999999999999775322 1111 23468899876666655543 35566654
No 179
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.08 E-value=0.014 Score=50.67 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998754
No 180
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.08 E-value=0.012 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILIN 178 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~ 178 (405)
.-.+++|+|+.|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45699999999999999999988
No 181
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.06 E-value=0.012 Score=51.39 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999865
No 182
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.04 E-value=0.014 Score=53.94 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998854
No 183
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.02 E-value=0.017 Score=55.98 Aligned_cols=46 Identities=20% Similarity=0.118 Sum_probs=35.7
Q ss_pred cccccchHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE--------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|-+..++.|...+.. ...+-|.++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578988888777665532 134568999999999999999999855
No 184
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.02 E-value=0.014 Score=50.17 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998855
No 185
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.01 E-value=0.014 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999984
No 186
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.00 E-value=0.0085 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=16.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-h
Q 043778 157 VGIIGLYGMGSVGKTTLLILIN-N 179 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~-~ 179 (405)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 6
No 187
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.99 E-value=0.013 Score=52.00 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~~ 65 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYID 65 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEEC
Confidence 34699999999999999999998733 2345666663
No 188
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.97 E-value=0.08 Score=48.98 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKI 213 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 213 (405)
.-.++.|.|.+|+||||||..+..+. ..+. ..++|++.- .+..++...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 44689999999999999999988654 2222 577887654 56777777777654
No 189
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.95 E-value=0.013 Score=52.58 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|+|++|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999855
No 190
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.92 E-value=0.013 Score=51.60 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 63 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD----APTEGKVFL 63 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 34689999999999999999998733 234566665
No 191
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.91 E-value=0.085 Score=48.86 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCC---------CC-----CEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPN---------YF-----DVVIWAVASKVVEIEKIQESIAKKIGF 215 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~l~~~i~~~l~~ 215 (405)
.-.++.|.|.+|+|||+||..+.... .... .. ..++|++....++...+... +..++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCC
Confidence 45799999999999999999988643 1110 11 47889998888877776643 455554
No 192
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.90 E-value=0.019 Score=58.34 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=36.3
Q ss_pred cccccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45789888887777766654 588999999999999999999854
No 193
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.87 E-value=0.015 Score=51.72 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
. .+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 57 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIV----KPDRGEVRL 57 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEE
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 5 799999999999999999999743 233466665
No 194
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.87 E-value=0.028 Score=48.43 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=27.8
Q ss_pred HHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 144 IFDKLWRCLTE-EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 144 ~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-+..+..++.+ +.-..+.|+|++|+||||+|..+.+..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555555543 233479999999999999999988855
No 195
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.82 E-value=0.018 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+++|+|+.|+||||++..+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998755
No 196
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.82 E-value=0.017 Score=51.02 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 197
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.82 E-value=0.014 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999999873
No 198
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.80 E-value=0.019 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+++|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
No 199
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.77 E-value=0.018 Score=53.00 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
...++|+|+|.||+||||+|..+.... .... ..++-|+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L-a~~G--~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF-SILG--KRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH-HHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH-HHCC--CeEEEEeCCC
Confidence 367899999999999999999887655 2121 1456666554
No 200
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.76 E-value=0.018 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+|.|.|++|+||+|.|+.+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999865
No 201
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.75 E-value=0.018 Score=52.95 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+++|.+|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988654
No 202
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.73 E-value=0.018 Score=53.76 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|.|+.|+||||||..+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998854
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.72 E-value=0.039 Score=52.09 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=28.2
Q ss_pred HHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLT--EEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+.+.+. .++..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554 3467899999999999999999987643
No 204
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.69 E-value=0.017 Score=52.56 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~----~p~~G~I~~ 67 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL----KPSSGRILF 67 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCeEEEE
Confidence 34699999999999999999998733 334566665
No 205
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.68 E-value=0.016 Score=52.31 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE----KPSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 44699999999999999999998733 233566666
No 206
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.68 E-value=0.013 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-.+++|+|+.|+|||||.+.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 207
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.65 E-value=0.018 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.-.+++|+|+.|+|||||.+.+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346999999999999999999997
No 208
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.65 E-value=0.019 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998854
No 209
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.64 E-value=0.035 Score=54.86 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=33.4
Q ss_pred cccccchHHHHHHHHHh---hcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCL---TEE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..+.++.+.. ... -.+-+.|+|++|+||||||+.+.+..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56789887766655543 221 12348999999999999999999854
No 210
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.64 E-value=0.017 Score=51.40 Aligned_cols=35 Identities=29% Similarity=0.200 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 65 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV----RAQKGKIIF 65 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 34699999999999999999998733 233566666
No 211
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.64 E-value=0.019 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 212
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.63 E-value=0.033 Score=51.43 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 144 IFDKLWRCLTEE---QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 144 ~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+.+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 444455555542 24678899999999999999999865
No 213
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.62 E-value=0.034 Score=54.56 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCC
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVE 201 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~ 201 (405)
...+|+|+|..|+|||||++.+.... .. -.+.+++.-.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll-~~---~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF-EQ---QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH-HH---TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh-hh---cCCeEEEecCcccc
Confidence 45799999999999999999998754 21 13445554344444
No 214
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.61 E-value=0.018 Score=51.28 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999998743
No 215
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.60 E-value=0.018 Score=52.05 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 70 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL----SPSHGECHL 70 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS----CCSSCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEE
Confidence 44699999999999999999998743 233566665
No 216
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.59 E-value=0.017 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999998743
No 217
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.59 E-value=0.017 Score=51.88 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 66 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL----KADEGRVYF 66 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 34699999999999999999998733 233566665
No 218
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.59 E-value=0.019 Score=52.85 Aligned_cols=25 Identities=16% Similarity=0.180 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4579999999999999999999874
No 219
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.59 E-value=0.015 Score=50.69 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 68 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL----KPLKGEIIY 68 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEE
Confidence 34589999999999999999998743 223456655
No 220
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.57 E-value=0.021 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998855
No 221
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.56 E-value=0.018 Score=51.46 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY----IPENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 34699999999999999999998743 233566666
No 222
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.54 E-value=0.018 Score=51.97 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 83 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE----DFDEGEIII 83 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEE
Confidence 44699999999999999999998733 233566666
No 223
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.54 E-value=0.02 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.-.+++|+|+.|+|||||.+.+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446999999999999999999997
No 224
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.52 E-value=0.022 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.173 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999873
No 225
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.51 E-value=0.024 Score=52.95 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+...+++|+|+.|+||||++..+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999988755
No 226
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.50 E-value=0.028 Score=56.35 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=34.5
Q ss_pred cccccchHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+.....+.+.+.- ....++.++|++|+||||||+.+.+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578887777666554321 145689999999999999999998754
No 227
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.46 E-value=0.024 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..-.+++|+|+.|+|||||.+.+..-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34569999999999999999998764
No 228
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.45 E-value=0.019 Score=51.52 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 74 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI----KPSSGIVTV 74 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 44699999999999999999998733 233566666
No 229
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.44 E-value=0.02 Score=51.61 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. . . .+.+++
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~-~-~G~I~i 78 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY---D-A-EGDIKI 78 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS---C-C-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC---C-C-CeEEEE
Confidence 34699999999999999999999843 2 2 566665
No 230
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.44 E-value=0.092 Score=49.38 Aligned_cols=56 Identities=25% Similarity=0.298 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC----CEEEEEEeCCCCCHHHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYF----DVVIWAVASKVVEIEKIQESIAKKI 213 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F----~~~~wv~vs~~~~~~~l~~~i~~~l 213 (405)
.-.++.|+|++|+|||||+..+.... ...... ..++|++....+....+ ..+++.+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 45799999999999999999998754 111111 24488886655544333 3344443
No 231
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.44 E-value=0.02 Score=51.97 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY----QPTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEE
Confidence 44699999999999999999998743 233566665
No 232
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.42 E-value=0.026 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|++|+||||++..+....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 45799999999999999999988755
No 233
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.42 E-value=0.023 Score=49.60 Aligned_cols=48 Identities=23% Similarity=0.129 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQES 208 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 208 (405)
.-.+++|+|++|+|||||+..+.... . ..=..++|+.... ....+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~--~~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG-L--RDGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH-H--HHTCCEEEEESSS--CHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-H--HCCCeEEEEEccc--CHHHHHHH
Confidence 34689999999999999999998643 1 1112456665432 34444443
No 234
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.41 E-value=0.026 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.|.|++|+||||+|+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999855
No 235
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.41 E-value=0.025 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|+.|+|||||+..+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999998755
No 236
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.37 E-value=0.025 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.|+|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998743
No 237
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.37 E-value=0.026 Score=52.40 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|.|+|+.|+||||||..+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999854
No 238
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.36 E-value=0.021 Score=51.06 Aligned_cols=34 Identities=26% Similarity=0.189 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. .- . +.+++
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~---~p-~-G~i~~ 58 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT---SG-K-GSIQF 58 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS---CC-E-EEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC---CC-C-eEEEE
Confidence 34589999999999999999999743 22 2 66655
No 239
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.33 E-value=0.021 Score=51.56 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~----~p~~G~I~~ 66 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI----EPTSGDVLY 66 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEE
Confidence 34699999999999999999998733 233566665
No 240
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.31 E-value=0.029 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..+|.|+|+.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358999999999999999999873
No 241
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.29 E-value=0.042 Score=57.31 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=34.9
Q ss_pred cccccchHHHHHHHHHhh----cC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLT----EE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~----~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++.|.+..+++|.+.+. .+ .++-|.++|++|+|||+||+.+.+..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456777777776666542 21 35679999999999999999999854
No 242
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.29 E-value=0.022 Score=51.06 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998743
No 243
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.26 E-value=0.022 Score=51.82 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~~ 81 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE----PATSGTVNLF 81 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC----CCCCeEEEEC
Confidence 44689999999999999999998743 2234666653
No 244
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.22 E-value=0.03 Score=52.14 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|+|+.|+||||||..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999743
No 245
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.20 E-value=0.027 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998744
No 246
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.19 E-value=0.05 Score=51.72 Aligned_cols=26 Identities=23% Similarity=0.059 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+++|+|++|+|||||++.+....
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 55699999999999999999999744
No 247
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.18 E-value=0.031 Score=49.96 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...++.+.|.||+|||||+..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998765
No 248
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.18 E-value=0.013 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
No 249
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.16 E-value=0.027 Score=48.03 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-.|+|+|.+|+|||||...+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 250
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.13 E-value=0.023 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.141 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
...+|+|.|+.|+|||||++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999987
No 251
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.10 E-value=0.061 Score=52.62 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 143 SIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 143 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+..+...+..+. ..+.|.|.+|+||||++..+....
T Consensus 32 ~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 32 NAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34445555555433 389999999999999999988755
No 252
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.06 E-value=0.028 Score=51.03 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.++.|+|++|+|||||+..+....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999988644
No 253
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.06 E-value=0.033 Score=49.13 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 254
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.06 E-value=0.029 Score=54.17 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|+|++|+||||+|+.+....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999999998743
No 255
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.04 E-value=0.024 Score=47.70 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 043778 159 IIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~ 179 (405)
-|+|+|.+|+|||||...+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999886
No 256
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.04 E-value=0.033 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.+++.|+|++|+|||+||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457789999999999999999874
No 257
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.03 E-value=0.067 Score=50.31 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIE 203 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 203 (405)
.-.++.|.|.+|+||||||.++.... . ..=..++|++....++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~--~~g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-Q--AAGGIAAFIDAEHALDPE 104 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEECCCCcCHH
Confidence 45699999999999999999988644 1 111357899887766653
No 258
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.00 E-value=0.035 Score=51.59 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|.+|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988755
No 259
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.97 E-value=0.032 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..|+|+|.+|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 260
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.97 E-value=0.035 Score=51.02 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|.|+.|+||||||..+....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999998743
No 261
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.97 E-value=0.19 Score=47.51 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=34.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIE 203 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 203 (405)
.-.++.|.|.+|+||||||..+.... . ..=..++|++....++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~-~--~~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA-Q--KAGGTCAFIDAEHALDPV 117 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH-H--HCCCeEEEEECCCChhHH
Confidence 45689999999999999999987654 1 112368899988776654
No 262
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.94 E-value=0.031 Score=51.18 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFD-VVIWAVASKVVEIEKIQESIAKKI 213 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~i~~~l 213 (405)
.-.+++|+|.+|+|||||+..+.... ... -. .++|+... .+...+...+....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~--~G~~v~~~~~e--~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW-GTA--MGKKVGLAMLE--ESVEETAEDLIGLH 87 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH-HHT--SCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHH--cCCeEEEEeCc--CCHHHHHHHHHHHH
Confidence 44699999999999999999988755 211 12 45666543 34555666655544
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.93 E-value=0.057 Score=52.31 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.+|.++|.+|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998888755
No 264
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.92 E-value=0.038 Score=48.88 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|+|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999855
No 265
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.92 E-value=0.074 Score=50.14 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIE 203 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 203 (405)
.-.++.|.|.+|+||||||.++.... . ..=..++|++....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~--~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HCCCeEEEEeCCCCccHH
Confidence 45699999999999999999988754 1 111368899987777654
No 266
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.91 E-value=0.029 Score=50.58 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
-.+++|+|+.|+|||||.+.+.. - . ...+.+++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G---l-~-p~~G~I~~ 62 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG---L-L-PYSGNIFI 62 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT---S-S-CCEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhC---C-C-CCCcEEEE
Confidence 35899999999999999999986 2 2 34566655
No 267
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.90 E-value=0.021 Score=52.64 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~----~p~~G~I~i 113 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY----DISSGCIRI 113 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC----CCCCcEEEE
Confidence 45699999999999999999998743 233466655
No 268
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.90 E-value=0.037 Score=48.77 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|.|++|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 269
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.89 E-value=0.14 Score=47.10 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=44.1
Q ss_pred chHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCCEEEEEEeCC-CCCHHHHHHHHHHHhC
Q 043778 141 LESIFDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKFLDEP-NYFDVVIWAVASK-VVEIEKIQESIAKKIG 214 (405)
Q Consensus 141 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~-~~F~~~~wv~vs~-~~~~~~l~~~i~~~l~ 214 (405)
-+..++.|.+.+..+......++|++|+||||+|..+.+...... .+.+. .++..+. .....++ +.++..+.
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~ 75 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLN 75 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHh
Confidence 345566777777766677999999999999999999987420111 23343 4454432 3444333 34555553
No 270
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.84 E-value=0.067 Score=51.60 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=24.2
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 153 TEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 153 ~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....-.+++|+|+.|+|||||...+....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 33455699999999999999999998754
No 271
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.80 E-value=0.04 Score=50.58 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|+|.+|+||||++..+....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998755
No 272
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.74 E-value=0.057 Score=52.26 Aligned_cols=26 Identities=31% Similarity=0.181 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.++|++|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999888655
No 273
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.74 E-value=0.053 Score=47.71 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=32.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESI 209 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 209 (405)
.-.++.|.|.+|+||||||..+...... .=..++|++... ...++...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS--CHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC--CHHHHHHHH
Confidence 3468999999999999998887654311 113577776544 344444433
No 274
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.71 E-value=0.038 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998743
No 275
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.68 E-value=0.033 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4469999999999999999999874
No 276
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.68 E-value=0.039 Score=49.58 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
++|+|.|.||+||||+|..+.... .... ..++.|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l-a~~G--~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL-HAMG--KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH-HTTT--CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH-HHCC--CcEEEEcCCC
Confidence 578889999999999999988765 2222 2455666543
No 277
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.67 E-value=0.049 Score=56.90 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=36.7
Q ss_pred cccccchHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.+...+... ....+.++|++|+|||+||+.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789998888888777531 22369999999999999999999854
No 278
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.65 E-value=0.048 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-|+|+|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
No 279
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.65 E-value=0.04 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999874
No 280
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.60 E-value=0.039 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..|+|+|.+|+|||||...+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999873
No 281
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.60 E-value=0.025 Score=57.37 Aligned_cols=46 Identities=20% Similarity=0.105 Sum_probs=31.8
Q ss_pred cccccchHHHHHHHHHhhcCCce-----------EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEEQVG-----------IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++|.+..+..+.-.|.++..+ -|.++|++|+|||+||+.+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 45677776555554444433211 58899999999999999998743
No 282
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.55 E-value=0.039 Score=51.99 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999999743
No 283
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.52 E-value=0.086 Score=44.18 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHh
Q 043778 145 FDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 145 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
...+.+ +......-|+|+|.+|+|||||...+.+
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 344555 4445566799999999999999999985
No 284
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.51 E-value=0.041 Score=51.97 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ..-.+.+++
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~----~p~~G~I~i 87 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE----RPTEGSVLV 87 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC----CCCceEEEE
Confidence 44699999999999999999998743 233466665
No 285
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.46 E-value=0.049 Score=45.71 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.+.+|+|+.|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999864
No 286
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.44 E-value=0.042 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...++|+|+.|+|||||++.+..-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 287
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.40 E-value=0.049 Score=52.80 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.++|.+|+||||++..+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988755
No 288
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.39 E-value=0.05 Score=49.55 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
-++|+|.|.||+||||+|..+.... .... ..++.|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L-a~~G--~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL-AEMG--KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH-HHTT--CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH-HHCC--CeEEEEecCC
Confidence 3688899999999999999988755 2111 1355555543
No 289
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.38 E-value=0.042 Score=45.30 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999998764
No 290
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.38 E-value=0.046 Score=45.95 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
--|+|+|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998743
No 291
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.35 E-value=0.044 Score=46.98 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.-+.|.|.|++|+||||||..+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 292
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.34 E-value=0.045 Score=51.52 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3469999999999999999999873
No 293
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.33 E-value=0.071 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||.+.+...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3459999999999999999988653
No 294
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.33 E-value=0.049 Score=44.38 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-|+|+|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358899999999999999998743
No 295
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.27 E-value=0.047 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.049 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
....|+|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999874
No 297
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.25 E-value=0.046 Score=47.38 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998743
No 298
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.23 E-value=0.052 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 299
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.20 E-value=0.052 Score=44.15 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988764
No 300
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.19 E-value=0.05 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
No 301
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.18 E-value=0.049 Score=51.36 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3468999999999999999999973
No 302
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.16 E-value=0.053 Score=51.74 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|.|+.|+||||||..+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998643
No 303
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.15 E-value=0.11 Score=54.36 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=36.3
Q ss_pred cccccchHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45789888888877766421 23478999999999999999999855
No 304
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.14 E-value=0.14 Score=47.84 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=24.4
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 152 LTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 152 L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.+...+++.+.|.||+||||+|..+....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l 40 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL 40 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 344456788889999999999999988755
No 305
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.14 E-value=0.05 Score=51.68 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ..-.+.+++
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~----~p~~G~I~i 62 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE----TITSGDLFI 62 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC----CCCCeEEEE
Confidence 34689999999999999999999743 222455554
No 306
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.14 E-value=0.053 Score=44.30 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999988643
No 307
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.12 E-value=0.058 Score=57.18 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=36.2
Q ss_pred cccccchHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTEE---------QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789988888887766421 23589999999999999999998854
No 308
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.11 E-value=0.051 Score=51.33 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i 62 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY----KPTSGKIYF 62 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC----CCCceEEEE
Confidence 34699999999999999999999743 223455555
No 309
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.10 E-value=0.055 Score=44.28 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-|+|+|.+|+|||||...+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998743
No 310
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.10 E-value=0.05 Score=44.58 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
--|+|+|.+|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999864
No 311
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.10 E-value=0.055 Score=44.33 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 312
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.09 E-value=0.083 Score=48.57 Aligned_cols=33 Identities=30% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+++|...+.+ .+++++|++|+|||||...+. ..
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5556666543 589999999999999999998 54
No 313
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.08 E-value=0.057 Score=44.95 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=24.9
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHh
Q 043778 147 KLWRCLTE-EQVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 147 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
++.+.+.. ....-|+|+|.+|+|||||...+.+
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34444444 4566799999999999999988874
No 314
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.06 E-value=0.053 Score=51.48 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34689999999999999999999743
No 315
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.06 E-value=0.08 Score=44.29 Aligned_cols=24 Identities=42% Similarity=0.441 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
...-|+|+|.+|+|||||...+.+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999876
No 316
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.05 E-value=0.089 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999988654
No 317
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.04 E-value=0.06 Score=43.87 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043778 160 IGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~ 180 (405)
|+|+|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 318
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.03 E-value=0.055 Score=45.32 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999874
No 319
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.02 E-value=0.056 Score=45.49 Aligned_cols=23 Identities=48% Similarity=0.416 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||.+.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 45889999999999999877763
No 320
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.02 E-value=0.081 Score=50.87 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 556999999999999999999987
No 321
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.01 E-value=0.052 Score=44.34 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 043778 159 IIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~ 179 (405)
-|+|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998865
No 322
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.00 E-value=0.054 Score=51.37 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4469999999999999999999873
No 323
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.99 E-value=0.057 Score=44.76 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998774
No 324
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.97 E-value=0.12 Score=48.13 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 142 ESIFDKLWRCLTEEQ-VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 142 ~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+...+.+.+.+..+. .+.+.++|++|+|||++|+.+.+..
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 556677777777664 5679999999999999999998754
No 325
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.94 E-value=0.047 Score=50.63 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...+++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3579999999999999999999864
No 326
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.94 E-value=0.12 Score=48.45 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=24.5
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 152 LTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 152 L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.+.+.+++.+.|.||+||||+|..+....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 334567899999999999999999887654
No 327
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.91 E-value=0.068 Score=45.75 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=21.5
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+.+.+.......--|+|+|.+|+|||||...+.+..
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3333333334455578999999999999998888643
No 328
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.91 E-value=0.059 Score=44.61 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..-|+|+|.+|+|||||...+.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999874
No 329
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.91 E-value=0.04 Score=49.52 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....|+|.|..|+||||+|+.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999988743
No 330
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.89 E-value=0.22 Score=45.96 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKIGFF 216 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~ 216 (405)
.++-|.|++|+|||||+.++.....+ ...=..++|++....++.. .++.++..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd 81 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVD 81 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCC
Confidence 37899999999999999988765411 1011468899887777764 26667654
No 331
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.89 E-value=0.038 Score=53.58 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|+|.+|+||||++..+....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999988754
No 332
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.87 E-value=0.061 Score=44.42 Aligned_cols=23 Identities=30% Similarity=0.324 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 333
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.87 E-value=0.22 Score=46.45 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=39.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKI 213 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 213 (405)
.-.++.|.|.+|+||||||..+..+. .. .=..++|++. ..+...+...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~-a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA-LN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 34689999999999999999998765 21 1135677754 556778888777665
No 334
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.86 E-value=0.062 Score=43.97 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998864
No 335
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.86 E-value=0.063 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..-.+++|+|+.|+|||||+..+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34568999999999999999998764
No 336
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.85 E-value=0.061 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999887763
No 337
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.84 E-value=0.17 Score=43.86 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.|.|+.|+||||+++.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998866
No 338
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.84 E-value=0.045 Score=51.43 Aligned_cols=35 Identities=23% Similarity=0.059 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~~ 59 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH----VPDSGRILL 59 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC----CCCCcEEEE
Confidence 34699999999999999999999743 233566665
No 339
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.84 E-value=0.064 Score=43.82 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998864
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.81 E-value=0.067 Score=44.24 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35889999999999999998764
No 341
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.80 E-value=0.067 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.|+|+.|+||||++..+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999986665543
No 342
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.75 E-value=0.067 Score=47.01 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...++|.|++|+||||+|+.+....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998855
No 343
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.75 E-value=0.064 Score=45.35 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..-|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999998873
No 344
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.74 E-value=0.063 Score=50.45 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55799999999999999999999865
No 345
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.74 E-value=0.064 Score=46.28 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....|.|+|.+|+|||||...+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998743
No 346
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.74 E-value=0.074 Score=49.77 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
....+++|+|++|+|||||...+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46679999999999999999999753
No 347
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.72 E-value=0.075 Score=43.92 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 348
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.71 E-value=0.053 Score=51.28 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34589999999999999999998744
No 349
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.70 E-value=0.051 Score=49.97 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 043778 159 IIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~ 179 (405)
-|+|+|.+|+|||||...++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999886
No 350
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.68 E-value=0.093 Score=52.48 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|+.|+|||||++.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999999855
No 351
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.67 E-value=0.067 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.+.|.||+||||+|..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47789999999999998888755
No 352
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.67 E-value=0.067 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-|+|+|.+|+|||||...+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999998743
No 353
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.67 E-value=0.068 Score=44.11 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..-|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998743
No 354
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.65 E-value=0.067 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999888764
No 355
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.63 E-value=0.15 Score=44.98 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.|.|+.|+||||+++.+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 356
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.62 E-value=0.071 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999764
No 357
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.60 E-value=0.075 Score=44.76 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+...|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999863
No 358
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.60 E-value=0.091 Score=45.99 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=23.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 154 EEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
......|.|.|+.|+||||+++.+.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999999998865
No 359
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.60 E-value=0.042 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3469999999999999999999873
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.58 E-value=0.07 Score=44.44 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 361
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.58 E-value=0.12 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.106 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.+.|++|+||||+|+.+....
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHHH
Confidence 55789999999999999999999976
No 362
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.56 E-value=0.062 Score=44.97 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-|+|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998864
No 363
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.55 E-value=0.066 Score=51.08 Aligned_cols=35 Identities=26% Similarity=0.183 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAV 195 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~ 195 (405)
.-.+++|+|+.|+|||||.+.+..-. . ..+.+++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~---~--~~G~I~i~ 80 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL---N--TEGEIQID 80 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS---E--EEEEEEES
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC---C--CCeEEEEC
Confidence 44699999999999999999999733 1 34666663
No 364
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.55 E-value=0.055 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+++|.+|+||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999988655
No 365
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.54 E-value=0.07 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
--|.|+|.+|+|||||...+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998643
No 366
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.53 E-value=0.11 Score=44.32 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
...-|+|+|.+|+|||||...+.+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999875
No 367
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.52 E-value=0.072 Score=44.60 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 368
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.51 E-value=0.072 Score=43.98 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998864
No 369
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.50 E-value=0.04 Score=47.25 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
....|+|+|.+|+|||||...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999988765
No 370
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.49 E-value=0.073 Score=44.30 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043778 159 IIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-|+|+|.+|+|||||...+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998764
No 371
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.48 E-value=0.081 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
+..+|+|+|.+|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998863
No 372
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.48 E-value=0.082 Score=52.55 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.++|++|+||||+|+.+....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997643
No 373
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.47 E-value=0.074 Score=44.82 Aligned_cols=25 Identities=36% Similarity=0.315 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.--|+|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999988743
No 374
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.46 E-value=0.068 Score=44.90 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999999874
No 375
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.43 E-value=0.069 Score=44.18 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999998764
No 376
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.41 E-value=0.077 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..-|+|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3468999999999999999998743
No 377
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.41 E-value=0.06 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999998874
No 378
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.37 E-value=0.059 Score=45.87 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
..--|+|+|.+|+|||||...+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999853
No 379
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.36 E-value=0.064 Score=52.44 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-.+++|+|+.|+|||||++.+.+-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4468999999999999999999873
No 380
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.35 E-value=0.077 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..-|+|+|.+|+|||||...+.+.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998764
No 381
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.34 E-value=0.086 Score=45.34 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+|+|.|+.|+||||+|+.+....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999855
No 382
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.30 E-value=0.081 Score=43.89 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998863
No 383
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.27 E-value=0.088 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|+|+|++|+||||++..+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998765
No 384
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.26 E-value=0.081 Score=43.95 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..-|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999998864
No 385
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.26 E-value=0.082 Score=43.81 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-|+|+|.+|+|||||...+.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999998864
No 386
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.25 E-value=0.17 Score=45.52 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=28.0
Q ss_pred HHHHHHHhhcC-C-ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 145 FDKLWRCLTEE-Q-VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 145 ~~~l~~~L~~~-~-~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..-+..+|... + -.-|.++|++|.|||+||..+.+.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34466666653 2 457999999999999999999984
No 387
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.23 E-value=0.081 Score=45.04 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..-|+|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999988743
No 388
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.23 E-value=0.084 Score=43.70 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
--|+|+|.+|+|||||...+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999988744
No 389
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.22 E-value=0.17 Score=44.51 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHH
Q 043778 159 IIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEK 204 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~ 204 (405)
.|+|.|.||+||||+|..+.... .... ..++-|+.....+...
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~l-a~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIM-ASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHH-TTTC--SCEEEEEECTTSCHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH-HHCC--CeEEEEeCCCCcChHH
Confidence 36779999999999999998866 3222 3466666655444443
No 390
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.22 E-value=0.13 Score=43.26 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCC
Q 043778 159 IIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVE 201 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~ 201 (405)
+|.|+|.+|+||||+|..+.. . -..++|+.-...++
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~---~----~~~~~yiaT~~~~d 36 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIG---D----APQVLYIATSQILD 36 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHC---S----CSSEEEEECCCC--
T ss_pred CEEEECCCCCcHHHHHHHHHh---c----CCCeEEEecCCCCC
Confidence 378999999999999999886 2 12456666555443
No 391
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.21 E-value=0.059 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|+|+.|+|||||++.+..-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 392
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.20 E-value=0.083 Score=44.72 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..--|+|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998874
No 393
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.20 E-value=0.084 Score=44.75 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
--|+|+|.+|+|||||...+.+
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999998875
No 394
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.20 E-value=0.096 Score=44.96 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...+|+|+|++|+||+|+|..+.+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH
Confidence 4569999999999999999998763
No 395
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.19 E-value=0.084 Score=44.46 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3468899999999999999988743
No 396
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.18 E-value=0.076 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 446889999999999999977763
No 397
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.16 E-value=0.12 Score=47.34 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLTEEQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
++++...+.+ .+++|+|++|+|||||...+....
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhcccc
Confidence 4555555543 589999999999999999998743
No 398
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.13 E-value=0.084 Score=44.92 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...-|+|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34578999999999999999998743
No 399
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.13 E-value=0.085 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999875
No 400
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.09 E-value=0.085 Score=45.28 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..-|+|+|.+|+|||||...+.+..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998743
No 401
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.08 E-value=0.098 Score=48.99 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.+..+|+|+|.+|+|||||+..+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998753
No 402
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.07 E-value=0.086 Score=45.12 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998764
No 403
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.06 E-value=0.19 Score=43.53 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..|.|-|+.|+||||+++.+....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998866
No 404
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.05 E-value=0.087 Score=44.46 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998743
No 405
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.02 E-value=0.099 Score=43.67 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
....-|+|+|.+|+|||||...+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999864
No 406
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.02 E-value=0.068 Score=51.52 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043778 160 IGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~ 180 (405)
++|+|+.|+|||||...++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999863
No 407
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.00 E-value=0.087 Score=44.77 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999998874
No 408
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.99 E-value=0.09 Score=44.24 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.--|+|+|.+|+|||||...+.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998744
No 409
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.98 E-value=0.092 Score=44.12 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
--|+|+|.+|+|||||...+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998643
No 410
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.98 E-value=0.091 Score=44.11 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.--|+|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998743
No 411
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.09 Score=44.38 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 446899999999999999999874
No 412
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.94 E-value=0.092 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 413
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.93 E-value=0.094 Score=44.24 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998743
No 414
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.90 E-value=0.098 Score=48.06 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999864
No 415
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.89 E-value=0.093 Score=44.75 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=27.5
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCC
Q 043778 158 GIIGLY-GMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVE 201 (405)
Q Consensus 158 ~vi~I~-G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~ 201 (405)
++|+|+ +.||+||||+|..+.... .... ..++.++.....+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l-a~~g--~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL-SRSG--YNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH-HHTT--CCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH-HHCC--CeEEEEECCCCCC
Confidence 578887 678899999999987755 2121 2456666654433
No 416
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.85 E-value=0.097 Score=44.07 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|.|+|.+|+|||||...+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999998864
No 417
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.81 E-value=0.091 Score=46.26 Aligned_cols=26 Identities=23% Similarity=0.031 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45679999999999999999998744
No 418
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.81 E-value=0.095 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|+|++|+|||||...+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999999744
No 419
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.80 E-value=0.085 Score=44.64 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHh
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
...--|+|+|.+|+|||||...+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445699999999999999999865
No 420
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.73 E-value=0.096 Score=50.85 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..-.+++|+|+.|+|||||.+.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 355799999999999999999999855
No 421
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.72 E-value=0.1 Score=44.31 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...-|+|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999999864
No 422
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.70 E-value=0.1 Score=43.77 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..-|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998764
No 423
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.68 E-value=0.22 Score=42.85 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=28.1
Q ss_pred EEEEE-cCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHH
Q 043778 159 IIGLY-GMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIE 203 (405)
Q Consensus 159 vi~I~-G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 203 (405)
+|+|+ +.||+||||+|..+.... .... .++.++.....+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l-a~~g---~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL-ALQG---ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HTTS---CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH-HhcC---CEEEEECCCCCCHH
Confidence 56775 788999999999998766 2222 56667665544443
No 424
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.67 E-value=0.11 Score=50.88 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.++|++|+||||+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 425
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.65 E-value=0.11 Score=43.72 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
--|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998743
No 426
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.65 E-value=0.095 Score=44.45 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446889999999999999998763
No 427
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.64 E-value=0.1 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
--|+|+|.+|+|||||...+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998643
No 428
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.62 E-value=0.2 Score=47.52 Aligned_cols=53 Identities=11% Similarity=-0.039 Sum_probs=34.4
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCC
Q 043778 147 KLWRCLTE-EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVV 200 (405)
Q Consensus 147 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~ 200 (405)
++++.+.. ..-..++|+|.+|+|||||++.+.+........+. ++++-+++..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 34455443 35569999999999999999998764311112333 3457777654
No 429
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.60 E-value=0.095 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 446889999999999999998763
No 430
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.46 E-value=0.11 Score=44.46 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-|+|+|.+|+|||||...+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
No 431
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.41 E-value=0.097 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 432
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.38 E-value=0.11 Score=43.67 Aligned_cols=23 Identities=39% Similarity=0.407 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 433
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.35 E-value=0.11 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-.+++|+|+.|+|||||++.++.-.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999999743
No 434
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.34 E-value=0.096 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-.+++|+|+.|+|||||++.++.-.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999743
No 435
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.34 E-value=0.1 Score=44.96 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999998763
No 436
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.32 E-value=0.24 Score=42.29 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043778 159 IIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|+|=|.-|+||||.++.+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998866
No 437
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.31 E-value=0.13 Score=46.25 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 438
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.27 E-value=0.071 Score=56.01 Aligned_cols=46 Identities=28% Similarity=0.260 Sum_probs=35.8
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|.+..++.|.+.+.- .....+.++|++|+||||||+.+.+..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4567888888877776542 134568899999999999999999865
No 439
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.26 E-value=0.11 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043778 158 GIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999999875
No 440
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.25 E-value=0.093 Score=44.28 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...-|+|+|.+|+|||||...+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999988643
No 441
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.24 E-value=0.096 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043778 160 IGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 160 i~I~G~~GiGKTtLA~~v~~~~ 181 (405)
|+|+|.+|+|||||...+....
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999998743
No 442
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.23 E-value=0.12 Score=44.06 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456899999999999999998764
No 443
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.22 E-value=0.12 Score=44.27 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999998864
No 444
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.22 E-value=0.12 Score=44.11 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
..-|+|+|.+|+|||||...+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998864
No 445
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.17 E-value=0.12 Score=44.77 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999998874
No 446
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.16 E-value=0.12 Score=43.88 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.-|+|+|.+|+|||||...+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998874
No 447
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.13 E-value=0.093 Score=46.10 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.|-|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 448
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.12 E-value=0.12 Score=51.73 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-.+++|+|+.|+|||||++.+....
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998743
No 449
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.10 E-value=0.14 Score=51.90 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|.|++|+||||+|+.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998743
No 450
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.08 E-value=0.12 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998764
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.08 E-value=0.17 Score=41.16 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 043778 157 VGIIGLYGMGSVGKTTLLILIN 178 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~ 178 (405)
..+.+|+|+.|+|||||...++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4588999999999999988875
No 452
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.07 E-value=0.13 Score=45.23 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESI 209 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 209 (405)
.-.++.|.|.+|+|||+||..+..+. - ...-..++|++.. .+...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~-~~~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-A-EEYGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-H-HHHCCCEEEEESS--SCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-H-HhcCCCceeeccc--CCHHHHHHHH
Confidence 35689999999999999998865321 0 1112346666544 3455555544
No 453
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.00 E-value=0.15 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...-|+|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998864
No 454
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.99 E-value=0.13 Score=44.33 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.--|.|+|.+|+|||||...+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999988743
No 455
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.93 E-value=0.12 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999743
No 456
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.92 E-value=0.13 Score=44.65 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 043778 159 IIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 159 vi~I~G~~GiGKTtLA~~v~~ 179 (405)
-|.|+|-+|+|||+|...+.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 478999999999999998876
No 457
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.92 E-value=0.19 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.|.|++|+||||+|+.+....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998854
No 458
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.91 E-value=0.075 Score=44.26 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=9.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999888753
No 459
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.89 E-value=0.12 Score=52.23 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.+++|+|+.|+|||||++.+..-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999998743
No 460
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.88 E-value=0.17 Score=42.25 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
-.-|.|.|.+|+||||||..+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 461
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.88 E-value=0.12 Score=51.58 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34699999999999999999998743
No 462
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.88 E-value=0.095 Score=44.05 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.--|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999987643
No 463
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.70 E-value=0.17 Score=47.97 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=28.7
Q ss_pred CceEEEEEc-CCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 156 QVGIIGLYG-MGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 156 ~~~vi~I~G-~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
+.++|+|+| .||+||||+|..+.... .... ..++.++...
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~L-a~~g--~rVlliD~D~ 182 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAH-ANMG--KKVFYLNIEQ 182 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHH-HHHT--CCEEEEECCT
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHH-HhCC--CCEEEEECCC
Confidence 578999986 99999999999887654 1111 2467777663
No 464
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.65 E-value=0.066 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
-.+++|+|++|+|||||...+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999999753
No 465
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.64 E-value=0.17 Score=43.57 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..|+|-|.-|+||||+++.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999876
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.63 E-value=0.14 Score=51.95 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34699999999999999999998743
No 467
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.63 E-value=0.13 Score=44.13 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.--|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998863
No 468
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.59 E-value=0.18 Score=43.91 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...|.|-|+.|+||||++..+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999976
No 469
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.58 E-value=0.3 Score=47.33 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=31.8
Q ss_pred ccchHHHHHHHHHhhc-----------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 139 VGLESIFDKLWRCLTE-----------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 139 vGr~~~~~~l~~~L~~-----------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.|.++-++.+.+.+.. +....|+|+|.+|+|||||...+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 4566667777666641 123579999999999999999998743
No 470
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.56 E-value=0.12 Score=52.11 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+.+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~----~p~~G~i~~ 402 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY----DIDEGHILM 402 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc----CCCCCeEEE
Confidence 45689999999999999999998743 234566665
No 471
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.47 E-value=0.29 Score=43.72 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=27.0
Q ss_pred HHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLTEE--QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++.+.+... ....|+|+|.+|+|||||...+....
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444432 45579999999999999999998743
No 472
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.47 E-value=0.13 Score=51.90 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEE
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWA 194 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv 194 (405)
.-.+++|+|+.|+|||||++.+..-. ....+.+.+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~----~p~~G~i~~ 402 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY----DVDSGSICL 402 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEE
Confidence 45689999999999999999998744 223455554
No 473
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=90.44 E-value=0.18 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
.+|+|.|+.|+||||+|..+...
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999998763
No 474
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.42 E-value=0.18 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.060 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998763
No 475
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.34 E-value=0.3 Score=43.80 Aligned_cols=37 Identities=27% Similarity=0.259 Sum_probs=26.6
Q ss_pred HHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLTEE--QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+.++.+.+... ....|+++|.+|+|||||...+.+..
T Consensus 25 l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444444432 34578999999999999999998743
No 476
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.31 E-value=0.16 Score=46.34 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCCceEEEEEc---CCCCcHHHHHHHHHhhc
Q 043778 145 FDKLWRCLTEEQVGIIGLYG---MGSVGKTTLLILINNKF 181 (405)
Q Consensus 145 ~~~l~~~L~~~~~~vi~I~G---~~GiGKTtLA~~v~~~~ 181 (405)
..++.+.+.. +.++|+|++ .||+||||+|..+....
T Consensus 23 ~~~~~r~~~~-~~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 23 LEELRRILSN-KNEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp HHHHHHHHHH-HCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 3444444433 346777776 99999999999988655
No 477
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.27 E-value=0.17 Score=46.62 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999998874
No 478
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.25 E-value=0.19 Score=43.96 Aligned_cols=25 Identities=12% Similarity=-0.033 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..+|+|.|+.|+||||+|+.+....
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4699999999999999999999855
No 479
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.19 E-value=0.17 Score=43.85 Aligned_cols=23 Identities=35% Similarity=0.340 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...+.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998874
No 480
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.18 E-value=0.14 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.+++|+|+.|+|||||.+.+....
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34699999999999999999998743
No 481
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.17 E-value=0.6 Score=46.04 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKI 213 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 213 (405)
.-.++.|.|.+|+||||||..+..+. ..+ +=..++|++.- .+..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~-a~~-~g~~vl~~s~E--~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW-GTA-MGKKVGLAMLE--ESVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH-TTT-SCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH-HHh-cCCcEEEEecc--CCHHHHHHHHHHHH
Confidence 34689999999999999999988765 222 11357777653 45677777776554
No 482
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.11 E-value=0.19 Score=47.49 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILI 177 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v 177 (405)
...-|.|.|.||+||||+++.+
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4567899999999999999985
No 483
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.07 E-value=0.55 Score=45.65 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=45.6
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCC-HHHHHHHHHHH
Q 043778 148 LWRCLTE-EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVE-IEKIQESIAKK 212 (405)
Q Consensus 148 l~~~L~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~-~~~l~~~i~~~ 212 (405)
.++.|.- ..-..++|.|.+|+|||+|+..+.++. . +.+-+.++++-+++... ..+++.++...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~-~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV-A-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT-T-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhh-H-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3444432 355789999999999999999998853 1 33457788888888754 56677777765
No 484
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.04 E-value=0.17 Score=44.93 Aligned_cols=25 Identities=20% Similarity=0.044 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.--|+++|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4568999999999999999988643
No 485
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.01 E-value=0.35 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
...+|.+.|++|+||||+|+.+....
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 486
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=89.99 E-value=0.19 Score=46.10 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043778 157 VGIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 157 ~~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
...|+|+|.+|+|||||...+...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 487
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.97 E-value=0.19 Score=43.52 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
....|+++|.-|+||||+++.+..
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 488
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.95 E-value=0.41 Score=46.50 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAKKI 213 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 213 (405)
.-.++.|.|.+|+||||||..+..+. ..+. ..++|++.- .+..++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~-a~~g--~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH-HHTT--CEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH-HHcC--CEEEEEECC--CCHHHHHHHHHHHH
Confidence 34689999999999999999988765 2221 356777543 45556666666554
No 489
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.92 E-value=0.27 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.041 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 158 GIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
..++|+|+.|+|||||++.+..-.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 469999999999999999998743
No 490
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.92 E-value=0.21 Score=43.65 Aligned_cols=26 Identities=27% Similarity=0.030 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.-.++.|.|..|+||||++..+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 44689999999999999888877755
No 491
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=89.87 E-value=0.56 Score=45.82 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=45.5
Q ss_pred HHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCC-HHHHHHHHHHH
Q 043778 149 WRCLTE-EQVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVE-IEKIQESIAKK 212 (405)
Q Consensus 149 ~~~L~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~-~~~l~~~i~~~ 212 (405)
++.|.- ..-..++|.|.+|+|||+|+..+.++. . +.+-+.++++-+++... ..+++.++...
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~-a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI-A-KAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT-T-TTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHH-H-hhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 444432 345689999999999999999998853 1 34557888998988764 56777777654
No 492
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.76 E-value=0.13 Score=43.13 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHh
Q 043778 155 EQVGIIGLYGMGSVGKTTLLILINN 179 (405)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLA~~v~~ 179 (405)
...--|+|+|.+|+|||||...+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3455799999999999999998864
No 493
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.67 E-value=0.18 Score=47.59 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+..+|+|+|.+|+|||||...+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 56679999999999999999998743
No 494
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.61 E-value=0.17 Score=50.32 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 043778 158 GIIGLYGMGSVGKTTLLILI 177 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v 177 (405)
.+++|+|++|+|||||++.+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
No 495
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.60 E-value=0.12 Score=44.52 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
+...|+|+|..|+|||||...+.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998753
No 496
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.54 E-value=0.2 Score=48.81 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043778 156 QVGIIGLYGMGSVGKTTLLILINNKFLDEPNYFDVVIWAVASKVVEIEKIQESIAK 211 (405)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 211 (405)
.-.++.|.|.+|+||||||..+.... .... =..++|++.. .+...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~-~~~~-g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV-ATKT-NENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH-HHHS-SCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhC-CCcEEEEECC--CCHHHHHHHHHH
Confidence 34689999999999999999988755 2111 1257777643 455667666654
No 497
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.53 E-value=0.17 Score=52.81 Aligned_cols=46 Identities=28% Similarity=0.260 Sum_probs=34.8
Q ss_pred cccccchHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043778 136 LTIVGLESIFDKLWRCLTE-------------EQVGIIGLYGMGSVGKTTLLILINNKF 181 (405)
Q Consensus 136 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~~~ 181 (405)
.++.|.++.+++|.+.+.- ...+-|.++|++|.|||.||+.+.+..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 4567788777777765431 134568899999999999999999954
No 498
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.51 E-value=0.26 Score=43.26 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=27.5
Q ss_pred CceEEEEEc-CCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeCC
Q 043778 156 QVGIIGLYG-MGSVGKTTLLILINNKFLDEPNYFDVVIWAVASK 198 (405)
Q Consensus 156 ~~~vi~I~G-~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs~ 198 (405)
..++|+|++ .||+||||+|..+.... .... =..++.|+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~l-a~~~-g~~VlliD~D~ 44 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFAL-SQEP-DIHVLAVDISL 44 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH-TTST-TCCEEEEECCT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHH-HhCc-CCCEEEEECCC
Confidence 357888875 68899999999998766 2220 12456666543
No 499
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=89.49 E-value=0.16 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043778 158 GIIGLYGMGSVGKTTLLILINNK 180 (405)
Q Consensus 158 ~vi~I~G~~GiGKTtLA~~v~~~ 180 (405)
--|+|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998763
No 500
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.45 E-value=0.16 Score=45.28 Aligned_cols=39 Identities=28% Similarity=0.257 Sum_probs=26.9
Q ss_pred CceEEEEE-cCCCCcHHHHHHHHHhhccCCCCCCCEEEEEEeC
Q 043778 156 QVGIIGLY-GMGSVGKTTLLILINNKFLDEPNYFDVVIWAVAS 197 (405)
Q Consensus 156 ~~~vi~I~-G~~GiGKTtLA~~v~~~~~~~~~~F~~~~wv~vs 197 (405)
+.++|+|+ +.||+||||+|..+.... .... ..++.|+..
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~l-a~~g--~~VlliD~D 44 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYL-ARLG--KRVLLVDLD 44 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHH-HHTT--CCEEEEECC
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHH-HHCC--CCEEEEECC
Confidence 45789997 688999999999988755 2121 245555544
Done!