Query 043779
Match_columns 581
No_of_seqs 375 out of 3113
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:16:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-79 5.2E-84 673.5 41.6 566 3-581 2-610 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-45 2.9E-50 367.8 13.9 279 162-445 1-286 (287)
3 PLN03210 Resistant to P. syrin 100.0 7.5E-43 1.6E-47 404.8 33.5 386 155-577 182-645 (1153)
4 PRK04841 transcriptional regul 99.6 3.3E-14 7.3E-19 164.4 26.4 294 156-495 13-332 (903)
5 PRK00411 cdc6 cell division co 99.5 1.1E-11 2.4E-16 129.3 29.0 300 155-470 28-359 (394)
6 COG2909 MalT ATP-dependent tra 99.4 1.5E-11 3.2E-16 130.7 20.8 298 156-497 18-340 (894)
7 TIGR02928 orc1/cdc6 family rep 99.4 1.9E-10 4.2E-15 118.7 28.1 303 156-471 14-352 (365)
8 PRK00080 ruvB Holliday junctio 99.4 2.7E-12 5.8E-17 129.9 13.1 263 157-470 25-311 (328)
9 TIGR00635 ruvB Holliday juncti 99.4 1.3E-11 2.8E-16 124.1 17.8 262 157-469 4-289 (305)
10 TIGR03015 pepcterm_ATPase puta 99.4 5.3E-11 1.2E-15 117.3 22.0 181 183-368 43-242 (269)
11 PF01637 Arch_ATPase: Archaeal 99.3 1.7E-11 3.7E-16 118.0 13.5 196 159-363 1-233 (234)
12 COG3899 Predicted ATPase [Gene 99.2 2.6E-10 5.6E-15 127.9 19.4 315 159-495 2-386 (849)
13 PF05729 NACHT: NACHT domain 99.1 5.3E-10 1.1E-14 101.4 11.7 143 184-332 1-163 (166)
14 PTZ00112 origin recognition co 99.1 1.5E-08 3.3E-13 109.0 21.8 301 156-470 754-1087(1164)
15 PRK06893 DNA replication initi 99.0 9.4E-09 2E-13 98.2 14.7 156 183-368 39-207 (229)
16 PF05496 RuvB_N: Holliday junc 99.0 1.1E-08 2.4E-13 94.1 13.6 181 157-368 24-225 (233)
17 PRK13342 recombination factor 98.9 8.6E-08 1.9E-12 100.1 18.9 177 157-365 12-197 (413)
18 PRK07003 DNA polymerase III su 98.9 2.3E-07 5.1E-12 99.6 21.3 197 157-367 16-224 (830)
19 PRK04195 replication factor C 98.9 2.7E-07 5.9E-12 98.3 21.8 247 157-443 14-271 (482)
20 COG2256 MGS1 ATPase related to 98.9 2.4E-08 5.3E-13 98.2 12.5 153 182-361 47-209 (436)
21 TIGR03420 DnaA_homol_Hda DnaA 98.8 4E-08 8.7E-13 94.1 13.2 171 162-367 22-204 (226)
22 PRK14961 DNA polymerase III su 98.8 1.8E-07 3.8E-12 95.9 18.6 192 157-362 16-218 (363)
23 PTZ00202 tuzin; Provisional 98.8 5.6E-07 1.2E-11 90.4 21.1 170 152-332 257-434 (550)
24 PRK12402 replication factor C 98.8 1E-07 2.2E-12 97.3 16.6 198 157-363 15-225 (337)
25 PRK05564 DNA polymerase III su 98.8 1.6E-07 3.5E-12 94.4 17.7 179 157-363 4-189 (313)
26 PRK14963 DNA polymerase III su 98.8 2.2E-08 4.7E-13 105.9 11.8 196 157-362 14-215 (504)
27 PF13401 AAA_22: AAA domain; P 98.8 1.3E-08 2.8E-13 88.4 8.1 118 182-301 3-125 (131)
28 PRK14949 DNA polymerase III su 98.8 1.5E-07 3.3E-12 103.0 17.3 200 157-364 16-220 (944)
29 PF13191 AAA_16: AAA ATPase do 98.8 9.4E-09 2E-13 95.1 6.7 51 158-210 1-51 (185)
30 PRK14960 DNA polymerase III su 98.8 1.9E-07 4.1E-12 99.2 16.8 192 157-362 15-217 (702)
31 PRK12323 DNA polymerase III su 98.8 2.2E-07 4.8E-12 98.5 16.3 196 157-363 16-224 (700)
32 COG1474 CDC6 Cdc6-related prot 98.7 7.6E-07 1.6E-11 90.4 18.7 295 157-471 17-336 (366)
33 PRK00440 rfc replication facto 98.7 5E-07 1.1E-11 91.4 17.4 181 157-362 17-201 (319)
34 PRK14957 DNA polymerase III su 98.7 4.3E-07 9.3E-12 96.4 17.2 185 157-366 16-223 (546)
35 PLN03025 replication factor C 98.7 3.3E-07 7.2E-12 92.3 15.7 183 157-362 13-198 (319)
36 TIGR02903 spore_lon_C ATP-depe 98.7 3E-06 6.5E-11 92.4 24.0 203 157-367 154-398 (615)
37 COG2255 RuvB Holliday junction 98.7 3.5E-07 7.6E-12 86.0 14.3 181 157-368 26-227 (332)
38 PRK07471 DNA polymerase III su 98.7 2.7E-07 5.8E-12 93.8 13.6 195 157-364 19-238 (365)
39 PRK14956 DNA polymerase III su 98.7 5.7E-07 1.2E-11 93.0 15.9 196 157-362 18-220 (484)
40 cd00009 AAA The AAA+ (ATPases 98.7 2.6E-07 5.6E-12 81.6 11.7 125 160-303 1-131 (151)
41 PRK07994 DNA polymerase III su 98.7 5.7E-07 1.2E-11 96.9 16.0 192 157-364 16-220 (647)
42 PRK06645 DNA polymerase III su 98.7 1.2E-06 2.6E-11 92.5 18.1 193 157-362 21-227 (507)
43 PRK08727 hypothetical protein; 98.7 7.5E-07 1.6E-11 85.3 15.3 149 184-362 42-202 (233)
44 PRK09112 DNA polymerase III su 98.6 8.8E-07 1.9E-11 89.5 16.4 196 157-365 23-241 (351)
45 TIGR02397 dnaX_nterm DNA polym 98.6 1.8E-06 3.9E-11 88.8 18.9 191 157-364 14-218 (355)
46 KOG2028 ATPase related to the 98.6 4.2E-07 9.1E-12 88.0 12.9 157 182-360 161-332 (554)
47 PRK13341 recombination factor 98.6 3.5E-07 7.6E-12 100.5 14.2 169 157-361 28-214 (725)
48 PF13173 AAA_14: AAA domain 98.6 1.9E-07 4.2E-12 80.6 9.5 119 184-324 3-127 (128)
49 PRK14951 DNA polymerase III su 98.6 1.2E-06 2.6E-11 94.3 17.3 197 157-364 16-225 (618)
50 TIGR00678 holB DNA polymerase 98.6 2.1E-06 4.6E-11 79.5 17.0 91 261-360 95-187 (188)
51 PRK14962 DNA polymerase III su 98.6 1.2E-06 2.6E-11 92.0 16.6 195 157-368 14-223 (472)
52 PRK14958 DNA polymerase III su 98.6 1.2E-06 2.7E-11 93.0 16.6 193 157-363 16-219 (509)
53 PRK08691 DNA polymerase III su 98.6 9.5E-07 2.1E-11 94.9 15.7 197 157-363 16-219 (709)
54 PRK14964 DNA polymerase III su 98.6 1.5E-06 3.4E-11 90.8 16.9 178 157-362 13-215 (491)
55 PRK07940 DNA polymerase III su 98.6 1.9E-06 4.2E-11 88.3 17.3 191 157-364 5-213 (394)
56 PRK05896 DNA polymerase III su 98.6 1.5E-06 3.3E-11 92.3 16.7 196 157-366 16-223 (605)
57 PRK08903 DnaA regulatory inact 98.6 1E-06 2.3E-11 84.3 14.2 153 182-368 41-203 (227)
58 PRK09087 hypothetical protein; 98.6 1.3E-06 2.8E-11 83.0 14.4 143 183-366 44-197 (226)
59 PRK08084 DNA replication initi 98.6 1.8E-06 4E-11 82.7 15.6 156 183-368 45-213 (235)
60 PRK14955 DNA polymerase III su 98.5 2E-06 4.3E-11 89.2 15.8 199 157-362 16-226 (397)
61 PRK14969 DNA polymerase III su 98.5 2.2E-06 4.8E-11 91.7 16.1 194 157-364 16-221 (527)
62 PRK09111 DNA polymerase III su 98.5 3.6E-06 7.9E-11 90.7 16.8 196 157-363 24-232 (598)
63 PRK14970 DNA polymerase III su 98.5 6.3E-06 1.4E-10 85.0 18.0 179 157-362 17-207 (367)
64 PRK14959 DNA polymerase III su 98.5 6.2E-06 1.3E-10 88.2 17.2 197 157-368 16-225 (624)
65 PF14516 AAA_35: AAA-like doma 98.5 1.8E-05 4E-10 79.9 20.0 201 156-371 10-246 (331)
66 PRK14952 DNA polymerase III su 98.5 7.2E-06 1.6E-10 88.0 17.8 197 157-367 13-223 (584)
67 PF00308 Bac_DnaA: Bacterial d 98.5 3E-06 6.6E-11 80.2 13.4 187 157-364 9-208 (219)
68 PRK14950 DNA polymerase III su 98.4 5.3E-06 1.1E-10 90.3 16.2 194 157-363 16-220 (585)
69 PRK05642 DNA replication initi 98.4 7E-06 1.5E-10 78.7 15.1 155 184-368 46-212 (234)
70 PRK07764 DNA polymerase III su 98.4 8.3E-06 1.8E-10 91.0 17.3 188 157-361 15-218 (824)
71 PRK14087 dnaA chromosomal repl 98.4 7.7E-06 1.7E-10 85.9 16.2 169 183-366 141-321 (450)
72 cd01128 rho_factor Transcripti 98.4 5.7E-07 1.2E-11 86.3 7.0 88 184-272 17-113 (249)
73 PRK14954 DNA polymerase III su 98.4 1.3E-05 2.8E-10 86.7 18.0 198 157-361 16-225 (620)
74 TIGR01242 26Sp45 26S proteasom 98.4 3.7E-06 7.9E-11 86.5 13.2 179 156-358 121-328 (364)
75 PRK14953 DNA polymerase III su 98.4 1.8E-05 4E-10 83.6 18.7 191 157-363 16-219 (486)
76 PRK08451 DNA polymerase III su 98.4 2E-05 4.3E-10 83.4 18.0 194 157-364 14-218 (535)
77 KOG2227 Pre-initiation complex 98.4 7.2E-06 1.6E-10 82.4 13.6 204 155-361 148-365 (529)
78 KOG0989 Replication factor C, 98.3 5E-06 1.1E-10 79.2 11.8 189 157-364 36-230 (346)
79 CHL00181 cbbX CbbX; Provisiona 98.3 3.2E-05 7E-10 76.2 18.0 134 185-334 61-211 (287)
80 PRK06620 hypothetical protein; 98.3 2.1E-05 4.5E-10 74.1 15.9 137 184-363 45-188 (214)
81 PF05621 TniB: Bacterial TniB 98.3 3.2E-05 6.9E-10 74.9 17.2 198 164-363 44-260 (302)
82 PRK07133 DNA polymerase III su 98.3 2.2E-05 4.8E-10 85.4 18.0 186 157-361 18-216 (725)
83 COG3903 Predicted ATPase [Gene 98.3 1E-06 2.2E-11 87.6 7.0 291 182-495 13-314 (414)
84 PRK09376 rho transcription ter 98.3 1.2E-06 2.6E-11 87.7 7.1 101 168-273 158-267 (416)
85 PRK06305 DNA polymerase III su 98.3 2.2E-05 4.7E-10 82.5 16.9 188 157-361 17-219 (451)
86 TIGR02880 cbbX_cfxQ probable R 98.3 3.7E-05 8E-10 75.9 17.3 134 185-334 60-210 (284)
87 PRK14948 DNA polymerase III su 98.3 3.3E-05 7.1E-10 84.1 18.3 195 157-363 16-221 (620)
88 PRK14971 DNA polymerase III su 98.3 3.1E-05 6.8E-10 84.2 18.1 189 157-362 17-220 (614)
89 TIGR02881 spore_V_K stage V sp 98.3 1.9E-05 4.1E-10 77.2 14.9 161 158-334 7-193 (261)
90 PHA02544 44 clamp loader, smal 98.3 2.2E-05 4.8E-10 79.3 15.5 147 157-330 21-171 (316)
91 PRK03992 proteasome-activating 98.2 1.4E-05 3E-10 82.6 13.6 178 156-357 130-336 (389)
92 TIGR00362 DnaA chromosomal rep 98.2 4E-05 8.7E-10 80.1 17.1 159 183-362 136-308 (405)
93 PRK14965 DNA polymerase III su 98.2 3.5E-05 7.5E-10 83.6 17.0 197 157-367 16-224 (576)
94 PRK06647 DNA polymerase III su 98.2 5.6E-05 1.2E-09 81.3 18.3 194 157-362 16-218 (563)
95 PRK05563 DNA polymerase III su 98.2 6.8E-05 1.5E-09 80.9 18.9 192 157-362 16-218 (559)
96 PRK07399 DNA polymerase III su 98.2 0.00011 2.3E-09 73.4 17.8 197 157-364 4-221 (314)
97 PRK00149 dnaA chromosomal repl 98.2 4.2E-05 9.1E-10 81.0 15.5 159 183-362 148-320 (450)
98 COG3267 ExeA Type II secretory 98.2 0.00018 3.9E-09 67.3 17.5 200 162-367 32-248 (269)
99 KOG2543 Origin recognition com 98.2 7.3E-05 1.6E-09 73.5 15.6 166 156-331 5-192 (438)
100 PRK05707 DNA polymerase III su 98.2 7.2E-05 1.6E-09 75.1 16.2 168 182-364 21-203 (328)
101 TIGR03345 VI_ClpV1 type VI sec 98.1 2.7E-05 5.9E-10 88.0 14.2 180 157-358 187-390 (852)
102 PRK14088 dnaA chromosomal repl 98.1 8.4E-05 1.8E-09 78.0 16.7 160 183-362 130-303 (440)
103 TIGR02639 ClpA ATP-dependent C 98.1 2.3E-05 5.1E-10 87.8 13.3 156 157-332 182-358 (731)
104 PRK14086 dnaA chromosomal repl 98.1 8.4E-05 1.8E-09 79.4 15.6 158 184-362 315-486 (617)
105 PRK11331 5-methylcytosine-spec 98.1 2.6E-05 5.7E-10 79.9 11.4 119 157-286 175-297 (459)
106 PF05673 DUF815: Protein of un 98.1 0.00013 2.8E-09 68.5 15.0 126 153-304 23-153 (249)
107 TIGR00767 rho transcription te 98.1 1.4E-05 3E-10 80.6 8.9 89 184-273 169-266 (415)
108 COG0593 DnaA ATPase involved i 98.0 0.00067 1.4E-08 69.1 20.3 175 156-354 87-276 (408)
109 PRK12422 chromosomal replicati 98.0 0.00021 4.4E-09 74.9 17.1 154 183-357 141-306 (445)
110 CHL00095 clpC Clp protease ATP 98.0 6.3E-05 1.4E-09 85.4 13.9 156 157-331 179-353 (821)
111 PF00004 AAA: ATPase family as 98.0 2.3E-05 5E-10 67.8 7.4 96 186-301 1-111 (132)
112 KOG0991 Replication factor C, 97.9 8.3E-05 1.8E-09 68.1 10.6 147 157-330 27-183 (333)
113 PRK10787 DNA-binding ATP-depen 97.9 0.0003 6.4E-09 78.8 17.3 165 156-332 321-506 (784)
114 PRK08769 DNA polymerase III su 97.9 0.00046 1E-08 68.7 16.4 187 164-364 11-208 (319)
115 PTZ00361 26 proteosome regulat 97.9 7E-05 1.5E-09 77.7 10.5 178 157-358 183-389 (438)
116 TIGR00602 rad24 checkpoint pro 97.9 0.00011 2.5E-09 79.4 12.1 208 156-367 83-326 (637)
117 TIGR00763 lon ATP-dependent pr 97.9 0.00049 1.1E-08 77.8 17.6 164 157-332 320-505 (775)
118 TIGR03689 pup_AAA proteasome A 97.8 0.00019 4E-09 75.7 12.9 167 157-333 182-379 (512)
119 PTZ00454 26S protease regulato 97.8 0.00027 5.7E-09 72.9 13.8 178 157-358 145-351 (398)
120 PF13177 DNA_pol3_delta2: DNA 97.8 0.00041 8.8E-09 62.3 13.4 137 161-320 1-162 (162)
121 smart00382 AAA ATPases associa 97.8 0.00014 3.1E-09 63.2 10.3 88 184-275 3-91 (148)
122 PRK10865 protein disaggregatio 97.8 0.00019 4.1E-09 81.5 13.7 154 157-332 178-354 (857)
123 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00029 6.2E-09 80.4 15.2 155 157-332 173-349 (852)
124 PRK11034 clpA ATP-dependent Cl 97.8 0.00015 3.3E-09 80.5 12.3 156 157-332 186-362 (758)
125 PRK06090 DNA polymerase III su 97.8 0.0013 2.8E-08 65.5 17.6 176 165-364 11-201 (319)
126 CHL00176 ftsH cell division pr 97.8 0.00036 7.8E-09 76.1 14.9 177 157-357 183-387 (638)
127 TIGR01241 FtsH_fam ATP-depende 97.8 0.00054 1.2E-08 73.5 16.0 182 157-362 55-265 (495)
128 PRK08116 hypothetical protein; 97.8 0.00011 2.3E-09 71.9 9.6 102 185-301 116-220 (268)
129 PRK08058 DNA polymerase III su 97.8 0.0006 1.3E-08 68.9 15.2 161 158-331 6-181 (329)
130 PRK06871 DNA polymerase III su 97.8 0.00034 7.3E-09 69.8 12.7 176 166-361 11-200 (325)
131 PRK10536 hypothetical protein; 97.7 0.00064 1.4E-08 64.7 13.4 133 157-303 55-214 (262)
132 PRK10865 protein disaggregatio 97.7 0.00049 1.1E-08 78.2 14.7 137 157-301 568-720 (857)
133 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00047 1E-08 78.6 14.7 135 157-301 565-717 (852)
134 COG2812 DnaX DNA polymerase II 97.7 0.00015 3.2E-09 76.0 8.7 189 157-359 16-215 (515)
135 TIGR02640 gas_vesic_GvpN gas v 97.7 0.0012 2.7E-08 64.4 14.7 108 185-302 23-161 (262)
136 PRK07993 DNA polymerase III su 97.6 0.003 6.5E-08 63.7 17.3 178 165-362 10-202 (334)
137 TIGR02639 ClpA ATP-dependent C 97.6 0.00099 2.1E-08 74.9 15.3 132 157-301 454-603 (731)
138 COG1222 RPT1 ATP-dependent 26S 97.6 0.0012 2.6E-08 64.7 13.7 176 158-358 152-357 (406)
139 PRK06964 DNA polymerase III su 97.6 0.0028 6E-08 63.8 16.3 93 261-364 131-225 (342)
140 KOG1514 Origin recognition com 97.6 0.0027 5.8E-08 67.5 16.6 207 156-367 395-624 (767)
141 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00034 7.4E-09 79.2 10.7 135 157-301 566-718 (852)
142 COG0466 Lon ATP-dependent Lon 97.5 0.0011 2.5E-08 70.6 13.1 165 156-332 322-508 (782)
143 PRK12377 putative replication 97.5 0.0002 4.4E-09 68.6 7.1 100 184-300 102-204 (248)
144 COG0542 clpA ATP-binding subun 97.5 0.00033 7.2E-09 76.4 9.2 136 157-300 491-642 (786)
145 PF10443 RNA12: RNA12 protein; 97.5 0.0048 1E-07 62.7 16.7 203 162-375 1-289 (431)
146 PRK08699 DNA polymerase III su 97.5 0.0005 1.1E-08 69.0 9.5 168 182-360 20-202 (325)
147 COG1373 Predicted ATPase (AAA+ 97.5 0.0022 4.7E-08 66.4 14.2 147 185-363 39-191 (398)
148 KOG2228 Origin recognition com 97.5 0.0015 3.2E-08 63.5 11.6 172 157-332 24-219 (408)
149 TIGR01243 CDC48 AAA family ATP 97.4 0.0015 3.3E-08 73.6 13.3 178 157-358 178-381 (733)
150 PF04665 Pox_A32: Poxvirus A32 97.4 0.00025 5.3E-09 67.1 5.8 35 185-221 15-49 (241)
151 PRK08181 transposase; Validate 97.4 0.00036 7.8E-09 67.8 6.9 99 185-301 108-208 (269)
152 CHL00095 clpC Clp protease ATP 97.4 0.001 2.2E-08 75.7 11.6 134 157-301 509-661 (821)
153 TIGR02902 spore_lonB ATP-depen 97.4 0.0012 2.6E-08 71.1 11.5 170 158-334 66-278 (531)
154 PRK04132 replication factor C 97.4 0.0045 9.7E-08 69.2 16.0 158 188-364 569-731 (846)
155 PRK07952 DNA replication prote 97.4 0.00091 2E-08 64.0 9.2 102 183-300 99-203 (244)
156 KOG0744 AAA+-type ATPase [Post 97.4 0.0029 6.4E-08 61.1 12.4 80 183-272 177-260 (423)
157 PRK06526 transposase; Provisio 97.4 0.00029 6.3E-09 68.1 5.8 99 184-301 99-200 (254)
158 PF07728 AAA_5: AAA domain (dy 97.3 0.00012 2.7E-09 64.0 2.8 89 186-287 2-90 (139)
159 PF12799 LRR_4: Leucine Rich r 97.3 0.0001 2.2E-09 49.9 1.6 35 547-581 3-39 (44)
160 PRK06921 hypothetical protein; 97.3 0.00084 1.8E-08 65.5 8.7 98 183-300 117-223 (266)
161 COG0470 HolB ATPase involved i 97.3 0.002 4.3E-08 65.2 11.9 148 158-324 2-173 (325)
162 PRK08939 primosomal protein Dn 97.3 0.00086 1.9E-08 66.7 8.8 121 161-300 135-259 (306)
163 PRK08118 topology modulation p 97.3 0.00012 2.6E-09 66.1 2.4 34 185-218 3-37 (167)
164 PF07693 KAP_NTPase: KAP famil 97.3 0.01 2.2E-07 60.1 16.6 44 163-208 2-45 (325)
165 KOG0741 AAA+-type ATPase [Post 97.3 0.0076 1.6E-07 62.0 14.7 150 182-354 537-704 (744)
166 TIGR01243 CDC48 AAA family ATP 97.3 0.005 1.1E-07 69.5 15.0 178 157-358 453-657 (733)
167 COG2607 Predicted ATPase (AAA+ 97.2 0.0065 1.4E-07 56.4 12.6 118 157-300 60-181 (287)
168 PF02562 PhoH: PhoH-like prote 97.2 0.0012 2.7E-08 61.0 8.2 130 161-304 4-158 (205)
169 PF00158 Sigma54_activat: Sigm 97.2 0.0016 3.5E-08 58.7 8.8 130 159-300 1-142 (168)
170 PRK09183 transposase/IS protei 97.2 0.00068 1.5E-08 65.9 6.7 23 184-206 103-125 (259)
171 PRK04296 thymidine kinase; Pro 97.2 0.0009 2E-08 61.9 7.2 113 184-303 3-117 (190)
172 PF01695 IstB_IS21: IstB-like 97.2 0.00044 9.5E-09 63.1 5.0 98 184-300 48-148 (178)
173 KOG2035 Replication factor C, 97.2 0.0021 4.6E-08 60.7 9.4 200 159-366 15-230 (351)
174 KOG0734 AAA+-type ATPase conta 97.2 0.0084 1.8E-07 61.8 14.3 50 158-207 305-361 (752)
175 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0035 7.6E-08 66.3 12.2 179 158-358 229-429 (489)
176 COG0542 clpA ATP-binding subun 97.2 0.0019 4.1E-08 70.8 10.2 158 157-331 170-345 (786)
177 PRK11034 clpA ATP-dependent Cl 97.2 0.0016 3.5E-08 72.5 9.8 130 158-300 459-606 (758)
178 PRK13531 regulatory ATPase Rav 97.2 0.0029 6.2E-08 65.9 10.6 155 157-331 20-193 (498)
179 KOG0733 Nuclear AAA ATPase (VC 97.1 0.011 2.4E-07 62.0 14.6 176 158-357 191-395 (802)
180 PHA00729 NTP-binding motif con 97.1 0.0025 5.4E-08 59.7 9.2 24 182-205 16-39 (226)
181 COG1223 Predicted ATPase (AAA+ 97.1 0.0098 2.1E-07 55.8 12.6 177 157-357 121-318 (368)
182 PTZ00494 tuzin-like protein; P 97.1 0.21 4.6E-06 51.0 22.8 169 153-332 367-544 (664)
183 smart00763 AAA_PrkA PrkA AAA d 97.1 0.0005 1.1E-08 68.8 4.4 52 156-207 50-102 (361)
184 PF03215 Rad17: Rad17 cell cyc 97.1 0.003 6.4E-08 67.3 10.3 61 157-221 19-79 (519)
185 PRK07261 topology modulation p 97.1 0.0014 3.1E-08 59.4 6.7 21 185-205 2-22 (171)
186 cd01120 RecA-like_NTPases RecA 97.0 0.005 1.1E-07 55.1 9.8 40 185-226 1-40 (165)
187 PF14532 Sigma54_activ_2: Sigm 97.0 0.0012 2.6E-08 57.7 5.3 106 160-300 1-108 (138)
188 PRK12608 transcription termina 97.0 0.0031 6.7E-08 63.5 8.8 101 165-271 119-229 (380)
189 TIGR02237 recomb_radB DNA repa 97.0 0.0023 5E-08 60.3 7.5 49 181-232 10-58 (209)
190 PF13207 AAA_17: AAA domain; P 97.0 0.00059 1.3E-08 58.0 3.1 21 185-205 1-21 (121)
191 COG2884 FtsE Predicted ATPase 97.0 0.012 2.5E-07 52.8 11.1 62 248-309 141-204 (223)
192 PRK09361 radB DNA repair and r 97.0 0.003 6.5E-08 60.2 8.2 46 182-230 22-67 (225)
193 cd01393 recA_like RecA is a b 96.9 0.005 1.1E-07 58.7 9.7 88 182-272 18-124 (226)
194 PRK11889 flhF flagellar biosyn 96.9 0.011 2.3E-07 59.9 12.1 103 182-287 240-347 (436)
195 PRK05541 adenylylsulfate kinas 96.9 0.0033 7.3E-08 57.4 8.1 36 182-219 6-41 (176)
196 PHA02244 ATPase-like protein 96.9 0.007 1.5E-07 60.8 10.7 98 185-301 121-230 (383)
197 KOG0731 AAA+-type ATPase conta 96.9 0.024 5.3E-07 61.9 15.5 182 157-362 311-522 (774)
198 PLN00020 ribulose bisphosphate 96.9 0.018 3.8E-07 57.7 13.1 26 181-206 146-171 (413)
199 KOG2004 Mitochondrial ATP-depe 96.9 0.005 1.1E-07 65.6 9.6 163 156-332 410-596 (906)
200 COG1484 DnaC DNA replication p 96.9 0.002 4.4E-08 62.3 6.4 81 183-280 105-185 (254)
201 KOG0733 Nuclear AAA ATPase (VC 96.9 0.019 4.2E-07 60.2 13.6 155 182-358 544-718 (802)
202 PRK13695 putative NTPase; Prov 96.9 0.0021 4.5E-08 58.6 6.1 22 185-206 2-23 (174)
203 TIGR01817 nifA Nif-specific re 96.8 0.011 2.3E-07 64.3 12.3 134 155-300 194-339 (534)
204 cd03214 ABC_Iron-Siderophores_ 96.8 0.015 3.3E-07 53.2 11.6 120 184-307 26-163 (180)
205 PRK05800 cobU adenosylcobinami 96.8 0.0016 3.6E-08 58.8 5.0 80 185-271 3-85 (170)
206 PRK06835 DNA replication prote 96.8 0.0024 5.2E-08 64.0 6.5 101 184-300 184-287 (329)
207 PRK06696 uridine kinase; Valid 96.8 0.0016 3.5E-08 62.0 4.9 44 161-206 2-45 (223)
208 cd03247 ABCC_cytochrome_bd The 96.8 0.013 2.9E-07 53.5 10.8 117 184-306 29-161 (178)
209 COG1136 SalX ABC-type antimicr 96.8 0.025 5.5E-07 53.0 12.5 58 252-309 150-210 (226)
210 cd00544 CobU Adenosylcobinamid 96.8 0.0024 5.2E-08 57.6 5.5 37 186-227 2-38 (169)
211 KOG0735 AAA+-type ATPase [Post 96.8 0.022 4.8E-07 60.9 13.2 161 183-364 431-616 (952)
212 cd01394 radB RadB. The archaea 96.7 0.0061 1.3E-07 57.8 8.5 43 182-226 18-60 (218)
213 TIGR01650 PD_CobS cobaltochela 96.7 0.035 7.5E-07 55.2 13.8 158 158-332 46-233 (327)
214 KOG0730 AAA+-type ATPase [Post 96.7 0.031 6.8E-07 59.3 14.1 169 158-346 435-629 (693)
215 cd01131 PilT Pilus retraction 96.7 0.0056 1.2E-07 57.0 7.9 112 184-307 2-114 (198)
216 TIGR03499 FlhF flagellar biosy 96.7 0.0056 1.2E-07 60.4 8.1 86 182-271 193-281 (282)
217 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0075 1.6E-07 53.4 7.9 116 184-302 3-138 (159)
218 cd03238 ABC_UvrA The excision 96.7 0.014 3.1E-07 53.0 10.0 113 184-306 22-153 (176)
219 PRK10733 hflB ATP-dependent me 96.7 0.024 5.1E-07 62.7 13.6 175 158-356 153-355 (644)
220 PRK07132 DNA polymerase III su 96.7 0.094 2E-06 51.9 16.4 153 182-363 17-184 (299)
221 PF08423 Rad51: Rad51; InterP 96.7 0.0071 1.5E-07 58.7 8.5 57 182-239 37-97 (256)
222 PRK11608 pspF phage shock prot 96.7 0.008 1.7E-07 60.7 9.2 134 157-301 6-150 (326)
223 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.023 4.9E-07 49.9 10.9 105 184-307 27-132 (144)
224 cd03223 ABCD_peroxisomal_ALDP 96.7 0.025 5.5E-07 51.0 11.4 115 184-306 28-152 (166)
225 PF00448 SRP54: SRP54-type pro 96.6 0.0073 1.6E-07 56.0 7.8 88 183-272 1-93 (196)
226 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0088 1.9E-07 57.4 8.7 50 182-231 18-71 (235)
227 PRK15429 formate hydrogenlyase 96.6 0.012 2.7E-07 65.8 11.0 134 157-301 376-520 (686)
228 KOG1969 DNA replication checkp 96.6 0.0073 1.6E-07 64.6 8.4 89 181-287 324-412 (877)
229 PF00485 PRK: Phosphoribulokin 96.6 0.012 2.5E-07 54.8 9.0 80 185-266 1-87 (194)
230 PF13604 AAA_30: AAA domain; P 96.6 0.015 3.2E-07 54.0 9.7 105 184-303 19-132 (196)
231 cd00983 recA RecA is a bacter 96.6 0.0032 7E-08 62.6 5.5 85 181-272 53-143 (325)
232 COG0572 Udk Uridine kinase [Nu 96.6 0.0056 1.2E-07 56.7 6.6 78 182-263 7-85 (218)
233 KOG0728 26S proteasome regulat 96.6 0.072 1.6E-06 49.8 13.6 170 159-349 148-348 (404)
234 PRK12724 flagellar biosynthesi 96.6 0.011 2.3E-07 60.6 9.2 23 183-205 223-245 (432)
235 cd03228 ABCC_MRP_Like The MRP 96.6 0.026 5.7E-07 51.2 11.0 120 184-307 29-160 (171)
236 PRK00771 signal recognition pa 96.5 0.025 5.5E-07 58.9 11.7 26 182-207 94-119 (437)
237 TIGR02974 phageshock_pspF psp 96.5 0.016 3.6E-07 58.4 10.1 129 159-300 1-142 (329)
238 cd03216 ABC_Carb_Monos_I This 96.5 0.019 4.1E-07 51.6 9.5 117 184-307 27-147 (163)
239 COG1618 Predicted nucleotide k 96.5 0.0021 4.7E-08 55.8 3.0 35 183-218 5-39 (179)
240 PRK08233 hypothetical protein; 96.5 0.0095 2E-07 54.6 7.7 24 183-206 3-26 (182)
241 cd01133 F1-ATPase_beta F1 ATP 96.5 0.0068 1.5E-07 58.6 6.8 86 184-271 70-172 (274)
242 COG1875 NYN ribonuclease and A 96.5 0.022 4.7E-07 56.3 10.1 137 160-304 227-390 (436)
243 PF07724 AAA_2: AAA domain (Cd 96.5 0.0021 4.6E-08 58.1 3.0 102 183-302 3-130 (171)
244 TIGR02012 tigrfam_recA protein 96.4 0.0081 1.8E-07 59.8 7.1 85 181-272 53-143 (321)
245 COG0464 SpoVK ATPases of the A 96.4 0.039 8.5E-07 59.4 13.0 134 181-334 274-425 (494)
246 PRK14722 flhF flagellar biosyn 96.4 0.027 5.8E-07 57.3 10.9 89 183-274 137-227 (374)
247 PRK15455 PrkA family serine pr 96.4 0.0024 5.3E-08 67.3 3.5 48 158-205 77-125 (644)
248 TIGR02238 recomb_DMC1 meiotic 96.4 0.015 3.1E-07 58.2 8.9 58 181-239 94-155 (313)
249 cd03222 ABC_RNaseL_inhibitor T 96.4 0.031 6.6E-07 50.9 10.2 103 184-307 26-137 (177)
250 cd03246 ABCC_Protease_Secretio 96.4 0.023 5E-07 51.7 9.4 23 184-206 29-51 (173)
251 PRK05022 anaerobic nitric oxid 96.4 0.019 4E-07 61.9 10.1 135 156-301 186-331 (509)
252 cd01125 repA Hexameric Replica 96.4 0.037 7.9E-07 53.3 11.2 22 185-206 3-24 (239)
253 KOG1051 Chaperone HSP104 and r 96.3 0.032 7E-07 62.3 11.7 121 158-289 563-687 (898)
254 PF12061 DUF3542: Protein of u 96.3 0.012 2.6E-07 56.5 7.2 77 4-80 296-373 (402)
255 PRK09270 nucleoside triphospha 96.3 0.019 4.2E-07 54.8 9.0 26 181-206 31-56 (229)
256 PRK06067 flagellar accessory p 96.3 0.019 4.1E-07 55.1 8.9 87 181-272 23-130 (234)
257 PRK09354 recA recombinase A; P 96.3 0.011 2.3E-07 59.4 7.3 85 181-272 58-148 (349)
258 COG1419 FlhF Flagellar GTP-bin 96.3 0.05 1.1E-06 55.1 12.0 104 182-289 202-310 (407)
259 PTZ00301 uridine kinase; Provi 96.3 0.0071 1.5E-07 56.6 5.7 23 183-205 3-25 (210)
260 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.041 8.8E-07 52.5 10.7 121 184-306 31-203 (254)
261 PRK12723 flagellar biosynthesi 96.3 0.034 7.4E-07 57.0 11.0 103 182-287 173-281 (388)
262 TIGR01069 mutS2 MutS2 family p 96.3 0.012 2.6E-07 66.1 8.2 24 182-205 321-344 (771)
263 cd03230 ABC_DR_subfamily_A Thi 96.3 0.041 8.9E-07 50.0 10.5 118 184-307 27-160 (173)
264 PRK07667 uridine kinase; Provi 96.3 0.0057 1.2E-07 56.7 4.9 38 166-206 3-40 (193)
265 cd02025 PanK Pantothenate kina 96.3 0.016 3.4E-07 55.0 7.8 21 185-205 1-21 (220)
266 TIGR02858 spore_III_AA stage I 96.3 0.039 8.5E-07 53.8 10.7 130 165-307 97-234 (270)
267 COG4608 AppF ABC-type oligopep 96.3 0.035 7.5E-07 53.1 10.0 125 183-310 39-178 (268)
268 cd03115 SRP The signal recogni 96.2 0.031 6.7E-07 50.8 9.5 22 185-206 2-23 (173)
269 PRK14974 cell division protein 96.2 0.036 7.8E-07 55.7 10.6 113 182-297 139-259 (336)
270 PRK08533 flagellar accessory p 96.2 0.034 7.5E-07 53.0 10.0 49 182-234 23-71 (230)
271 cd01124 KaiC KaiC is a circadi 96.2 0.032 6.9E-07 51.3 9.5 37 186-224 2-38 (187)
272 PRK04301 radA DNA repair and r 96.2 0.029 6.4E-07 56.4 9.9 52 182-233 101-156 (317)
273 PRK05439 pantothenate kinase; 96.2 0.029 6.3E-07 55.6 9.6 80 181-263 84-166 (311)
274 PRK05703 flhF flagellar biosyn 96.2 0.031 6.7E-07 58.4 10.1 87 184-273 222-310 (424)
275 PF13238 AAA_18: AAA domain; P 96.1 0.0039 8.4E-08 53.4 2.9 21 186-206 1-21 (129)
276 COG1126 GlnQ ABC-type polar am 96.1 0.1 2.2E-06 48.1 11.8 58 252-309 144-203 (240)
277 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.012 2.5E-07 55.5 6.2 121 183-308 29-160 (213)
278 TIGR00959 ffh signal recogniti 96.1 0.07 1.5E-06 55.6 12.2 25 182-206 98-122 (428)
279 COG0714 MoxR-like ATPases [Gen 96.1 0.022 4.7E-07 57.8 8.4 108 158-287 25-137 (329)
280 KOG0743 AAA+-type ATPase [Post 96.1 0.11 2.4E-06 53.1 13.0 150 184-367 236-412 (457)
281 PRK11388 DNA-binding transcrip 96.1 0.044 9.6E-07 61.0 11.5 129 157-300 325-465 (638)
282 KOG0729 26S proteasome regulat 96.1 0.066 1.4E-06 50.5 10.6 93 158-271 178-279 (435)
283 PF10236 DAP3: Mitochondrial r 96.1 0.064 1.4E-06 53.6 11.5 49 313-361 258-306 (309)
284 PLN03186 DNA repair protein RA 96.1 0.034 7.4E-07 56.1 9.6 57 182-239 122-182 (342)
285 cd03217 ABC_FeS_Assembly ABC-t 96.1 0.039 8.5E-07 51.5 9.4 23 184-206 27-49 (200)
286 PLN03187 meiotic recombination 96.0 0.042 9E-07 55.4 10.0 58 181-239 124-185 (344)
287 cd03229 ABC_Class3 This class 96.0 0.038 8.2E-07 50.5 8.9 23 184-206 27-49 (178)
288 PF13671 AAA_33: AAA domain; P 96.0 0.0058 1.3E-07 53.5 3.3 21 185-205 1-21 (143)
289 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.046 1E-06 52.5 9.7 49 181-233 19-67 (237)
290 PRK12726 flagellar biosynthesi 96.0 0.079 1.7E-06 53.6 11.5 89 182-273 205-296 (407)
291 COG0465 HflB ATP-dependent Zn 96.0 0.11 2.4E-06 55.6 13.2 182 155-360 148-357 (596)
292 COG0468 RecA RecA/RadA recombi 96.0 0.031 6.6E-07 54.4 8.3 89 181-271 58-150 (279)
293 PRK10867 signal recognition pa 96.0 0.086 1.9E-06 54.9 12.1 24 182-205 99-122 (433)
294 TIGR00554 panK_bact pantothena 95.9 0.039 8.5E-07 54.2 9.1 80 181-262 60-141 (290)
295 TIGR02236 recomb_radA DNA repa 95.9 0.05 1.1E-06 54.6 10.1 56 182-238 94-153 (310)
296 cd01122 GP4d_helicase GP4d_hel 95.9 0.077 1.7E-06 52.1 11.2 52 183-237 30-81 (271)
297 PF12775 AAA_7: P-loop contain 95.9 0.0073 1.6E-07 59.1 3.8 34 167-206 23-56 (272)
298 PRK10923 glnG nitrogen regulat 95.9 0.15 3.3E-06 54.5 14.2 47 157-206 138-184 (469)
299 cd03282 ABC_MSH4_euk MutS4 hom 95.9 0.015 3.3E-07 54.3 5.7 121 183-310 29-159 (204)
300 KOG0727 26S proteasome regulat 95.9 0.35 7.6E-06 45.4 14.2 49 158-206 156-212 (408)
301 cd02019 NK Nucleoside/nucleoti 95.9 0.006 1.3E-07 45.9 2.4 22 185-206 1-22 (69)
302 PRK05480 uridine/cytidine kina 95.8 0.0076 1.7E-07 56.7 3.5 25 182-206 5-29 (209)
303 COG0563 Adk Adenylate kinase a 95.8 0.016 3.5E-07 52.7 5.5 22 185-206 2-23 (178)
304 PRK10820 DNA-binding transcrip 95.8 0.031 6.7E-07 60.3 8.5 133 157-301 204-348 (520)
305 COG4618 ArpD ABC-type protease 95.8 0.02 4.3E-07 59.0 6.4 22 184-205 363-384 (580)
306 KOG1532 GTPase XAB1, interacts 95.7 0.035 7.6E-07 52.5 7.4 29 181-209 17-45 (366)
307 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.051 1.1E-06 48.5 8.4 117 184-308 26-146 (157)
308 PRK00409 recombination and DNA 95.7 0.023 4.9E-07 64.0 7.4 177 182-371 326-513 (782)
309 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.083 1.8E-06 50.4 10.4 114 182-300 19-164 (229)
310 PTZ00035 Rad51 protein; Provis 95.7 0.09 2E-06 53.2 10.9 58 181-239 116-177 (337)
311 PRK05917 DNA polymerase III su 95.7 0.38 8.2E-06 47.2 14.8 140 166-319 6-154 (290)
312 TIGR02239 recomb_RAD51 DNA rep 95.7 0.055 1.2E-06 54.2 9.3 58 181-239 94-155 (316)
313 TIGR00235 udk uridine kinase. 95.7 0.0091 2E-07 56.1 3.6 24 182-205 5-28 (207)
314 PRK12727 flagellar biosynthesi 95.7 0.033 7.1E-07 58.8 7.8 89 182-273 349-439 (559)
315 PRK06762 hypothetical protein; 95.7 0.0083 1.8E-07 54.1 3.1 23 183-205 2-24 (166)
316 PRK06547 hypothetical protein; 95.7 0.015 3.2E-07 52.7 4.7 26 181-206 13-38 (172)
317 PRK13539 cytochrome c biogenes 95.7 0.11 2.4E-06 48.7 10.7 62 256-320 139-202 (207)
318 PF07726 AAA_3: ATPase family 95.7 0.0088 1.9E-07 50.4 2.8 28 186-215 2-29 (131)
319 PF03308 ArgK: ArgK protein; 95.7 0.017 3.6E-07 54.9 4.9 59 165-226 14-72 (266)
320 cd03215 ABC_Carb_Monos_II This 95.6 0.13 2.8E-06 47.2 10.8 23 184-206 27-49 (182)
321 PF08433 KTI12: Chromatin asso 95.6 0.013 2.8E-07 57.2 4.3 23 184-206 2-24 (270)
322 TIGR00064 ftsY signal recognit 95.6 0.1 2.2E-06 51.1 10.6 89 182-273 71-165 (272)
323 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.18 4E-06 47.2 12.0 22 184-205 35-56 (207)
324 cd02028 UMPK_like Uridine mono 95.6 0.02 4.4E-07 52.3 5.1 22 185-206 1-22 (179)
325 TIGR01360 aden_kin_iso1 adenyl 95.5 0.01 2.2E-07 54.7 3.2 24 182-205 2-25 (188)
326 PRK06731 flhF flagellar biosyn 95.5 0.12 2.5E-06 50.4 10.5 103 183-287 75-181 (270)
327 TIGR01420 pilT_fam pilus retra 95.5 0.049 1.1E-06 55.4 8.3 111 184-305 123-233 (343)
328 PRK09544 znuC high-affinity zi 95.5 0.13 2.9E-06 49.8 11.1 23 184-206 31-53 (251)
329 PTZ00088 adenylate kinase 1; P 95.5 0.017 3.7E-07 54.9 4.6 20 186-205 9-28 (229)
330 PLN02348 phosphoribulokinase 95.5 0.073 1.6E-06 54.1 9.3 26 181-206 47-72 (395)
331 PRK10463 hydrogenase nickel in 95.5 0.06 1.3E-06 52.6 8.4 87 181-273 102-195 (290)
332 COG0396 sufC Cysteine desulfur 95.5 0.23 4.9E-06 46.3 11.5 61 252-312 152-214 (251)
333 cd03245 ABCC_bacteriocin_expor 95.5 0.16 3.5E-06 48.1 11.3 23 184-206 31-53 (220)
334 KOG0652 26S proteasome regulat 95.5 0.52 1.1E-05 44.5 13.9 49 157-205 171-227 (424)
335 PF13855 LRR_8: Leucine rich r 95.5 0.014 3.1E-07 42.6 3.2 55 515-578 3-61 (61)
336 PF03969 AFG1_ATPase: AFG1-lik 95.5 0.074 1.6E-06 54.2 9.3 105 182-300 61-166 (362)
337 COG1066 Sms Predicted ATP-depe 95.5 0.038 8.3E-07 55.6 6.9 82 183-273 93-179 (456)
338 cd03233 ABC_PDR_domain1 The pl 95.5 0.2 4.3E-06 46.8 11.5 23 184-206 34-56 (202)
339 TIGR00382 clpX endopeptidase C 95.4 0.065 1.4E-06 55.4 8.8 50 156-205 76-138 (413)
340 cd03283 ABC_MutS-like MutS-lik 95.4 0.031 6.8E-07 52.0 6.0 22 184-205 26-47 (199)
341 PRK03839 putative kinase; Prov 95.4 0.011 2.3E-07 54.2 2.9 22 185-206 2-23 (180)
342 PRK04328 hypothetical protein; 95.4 0.049 1.1E-06 52.7 7.5 42 182-225 22-63 (249)
343 TIGR02329 propionate_PrpR prop 95.4 0.05 1.1E-06 58.4 8.2 47 157-206 212-258 (526)
344 PRK04040 adenylate kinase; Pro 95.4 0.013 2.7E-07 54.1 3.2 22 184-205 3-24 (188)
345 KOG2170 ATPase of the AAA+ sup 95.4 0.077 1.7E-06 51.2 8.3 114 158-287 83-203 (344)
346 PF00910 RNA_helicase: RNA hel 95.4 0.0087 1.9E-07 49.6 1.8 21 186-206 1-21 (107)
347 PF01583 APS_kinase: Adenylyls 95.3 0.016 3.5E-07 51.1 3.5 23 184-206 3-25 (156)
348 cd03251 ABCC_MsbA MsbA is an e 95.3 0.27 5.8E-06 47.1 12.4 23 184-206 29-51 (234)
349 TIGR00150 HI0065_YjeE ATPase, 95.3 0.025 5.4E-07 48.5 4.5 41 164-207 6-46 (133)
350 PF06745 KaiC: KaiC; InterPro 95.3 0.022 4.8E-07 54.3 4.8 85 182-271 18-124 (226)
351 PF13481 AAA_25: AAA domain; P 95.3 0.097 2.1E-06 48.4 8.9 42 184-225 33-82 (193)
352 TIGR00708 cobA cob(I)alamin ad 95.3 0.088 1.9E-06 47.3 8.1 119 183-302 5-140 (173)
353 PRK07276 DNA polymerase III su 95.3 0.88 1.9E-05 44.8 15.8 69 261-330 103-173 (290)
354 COG1428 Deoxynucleoside kinase 95.3 0.012 2.7E-07 53.8 2.7 24 183-206 4-27 (216)
355 COG1102 Cmk Cytidylate kinase 95.3 0.011 2.4E-07 51.5 2.2 44 185-241 2-45 (179)
356 PRK14723 flhF flagellar biosyn 95.3 0.11 2.4E-06 57.6 10.4 24 183-206 185-208 (767)
357 cd01121 Sms Sms (bacterial rad 95.3 0.046 9.9E-07 56.0 7.1 83 182-272 81-168 (372)
358 cd03254 ABCC_Glucan_exporter_l 95.3 0.23 5E-06 47.3 11.6 23 184-206 30-52 (229)
359 COG1703 ArgK Putative periplas 95.2 0.019 4.1E-07 55.3 3.9 62 167-231 38-99 (323)
360 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.062 1.3E-06 52.4 7.6 40 182-223 35-74 (259)
361 PRK00625 shikimate kinase; Pro 95.2 0.014 3E-07 52.9 2.8 21 185-205 2-22 (173)
362 PRK13543 cytochrome c biogenes 95.2 0.27 5.9E-06 46.3 11.8 23 184-206 38-60 (214)
363 KOG0735 AAA+-type ATPase [Post 95.2 0.77 1.7E-05 49.7 15.8 179 158-360 668-872 (952)
364 cd03244 ABCC_MRP_domain2 Domai 95.2 0.23 4.9E-06 47.1 11.4 23 184-206 31-53 (221)
365 TIGR01818 ntrC nitrogen regula 95.2 0.15 3.3E-06 54.4 11.2 134 157-301 134-278 (463)
366 PF08298 AAA_PrkA: PrkA AAA do 95.2 0.024 5.2E-07 56.4 4.6 50 156-205 60-110 (358)
367 TIGR03574 selen_PSTK L-seryl-t 95.2 0.062 1.3E-06 52.1 7.5 21 186-206 2-22 (249)
368 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.012 2.7E-07 53.9 2.4 21 185-205 1-21 (183)
369 COG1936 Predicted nucleotide k 95.1 0.015 3.1E-07 51.5 2.6 20 185-204 2-21 (180)
370 cd03232 ABC_PDR_domain2 The pl 95.1 0.096 2.1E-06 48.5 8.3 22 184-205 34-55 (192)
371 PF00006 ATP-synt_ab: ATP synt 95.1 0.06 1.3E-06 50.5 6.8 83 185-271 17-114 (215)
372 TIGR03771 anch_rpt_ABC anchore 95.1 0.31 6.7E-06 46.3 11.9 23 184-206 7-29 (223)
373 COG1643 HrpA HrpA-like helicas 95.1 0.2 4.3E-06 56.3 11.8 137 163-310 52-216 (845)
374 cd02023 UMPK Uridine monophosp 95.1 0.013 2.9E-07 54.5 2.4 21 185-205 1-21 (198)
375 TIGR02322 phosphon_PhnN phosph 95.1 0.016 3.6E-07 52.9 3.0 23 184-206 2-24 (179)
376 PF00154 RecA: recA bacterial 95.1 0.031 6.7E-07 55.5 5.0 84 182-272 52-141 (322)
377 PRK13948 shikimate kinase; Pro 95.1 0.2 4.4E-06 45.7 10.0 24 182-205 9-32 (182)
378 cd02027 APSK Adenosine 5'-phos 95.1 0.16 3.5E-06 44.8 9.2 22 185-206 1-22 (149)
379 cd03213 ABCG_EPDR ABCG transpo 95.1 0.2 4.4E-06 46.4 10.2 23 184-206 36-58 (194)
380 PRK05973 replicative DNA helic 95.1 0.1 2.2E-06 49.7 8.2 49 182-234 63-111 (237)
381 PRK00131 aroK shikimate kinase 95.1 0.017 3.7E-07 52.4 3.0 23 183-205 4-26 (175)
382 TIGR03522 GldA_ABC_ATP gliding 95.1 0.31 6.8E-06 48.6 12.3 23 184-206 29-51 (301)
383 PF00625 Guanylate_kin: Guanyl 95.0 0.021 4.5E-07 52.5 3.5 36 184-221 3-38 (183)
384 PRK15424 propionate catabolism 95.0 0.081 1.8E-06 56.8 8.4 47 157-206 219-265 (538)
385 TIGR03740 galliderm_ABC gallid 95.0 0.13 2.9E-06 48.8 9.2 23 184-206 27-49 (223)
386 KOG0924 mRNA splicing factor A 95.0 0.29 6.4E-06 52.2 12.0 139 166-317 361-528 (1042)
387 PF03205 MobB: Molybdopterin g 95.0 0.028 6.1E-07 49.0 4.0 39 184-223 1-39 (140)
388 cd02021 GntK Gluconate kinase 95.0 0.016 3.4E-07 51.3 2.5 21 185-205 1-21 (150)
389 COG1120 FepC ABC-type cobalami 95.0 0.29 6.4E-06 47.0 11.2 23 183-205 28-50 (258)
390 PRK10751 molybdopterin-guanine 95.0 0.024 5.2E-07 51.1 3.6 25 182-206 5-29 (173)
391 cd00227 CPT Chloramphenicol (C 95.0 0.017 3.8E-07 52.6 2.8 22 184-205 3-24 (175)
392 PHA02774 E1; Provisional 95.0 0.09 1.9E-06 55.9 8.3 37 165-205 420-456 (613)
393 cd03240 ABC_Rad50 The catalyti 95.0 0.14 3E-06 47.9 8.9 53 255-307 132-188 (204)
394 cd02024 NRK1 Nicotinamide ribo 95.0 0.015 3.4E-07 53.2 2.4 22 185-206 1-22 (187)
395 PRK14721 flhF flagellar biosyn 95.0 0.12 2.6E-06 53.5 9.0 89 182-272 190-279 (420)
396 TIGR02788 VirB11 P-type DNA tr 94.9 0.12 2.5E-06 51.9 8.8 111 184-304 145-255 (308)
397 PRK05986 cob(I)alamin adenolsy 94.9 0.095 2.1E-06 47.8 7.3 118 183-302 22-158 (191)
398 COG0194 Gmk Guanylate kinase [ 94.9 0.031 6.6E-07 50.2 4.0 23 184-206 5-27 (191)
399 cd03285 ABC_MSH2_euk MutS2 hom 94.9 0.046 1E-06 51.8 5.5 121 182-309 29-160 (222)
400 smart00534 MUTSac ATPase domai 94.9 0.026 5.6E-07 52.0 3.7 119 185-309 1-129 (185)
401 cd01852 AIG1 AIG1 (avrRpt2-ind 94.9 0.42 9.1E-06 44.3 11.9 22 185-206 2-23 (196)
402 cd02020 CMPK Cytidine monophos 94.9 0.017 3.7E-07 50.7 2.4 21 185-205 1-21 (147)
403 PRK08972 fliI flagellum-specif 94.9 0.11 2.3E-06 53.9 8.4 84 184-271 163-261 (444)
404 PRK06995 flhF flagellar biosyn 94.9 0.15 3.3E-06 53.7 9.7 87 183-272 256-344 (484)
405 TIGR03263 guanyl_kin guanylate 94.9 0.021 4.5E-07 52.3 3.0 22 184-205 2-23 (180)
406 cd01135 V_A-ATPase_B V/A-type 94.9 0.093 2E-06 50.8 7.4 88 184-271 70-175 (276)
407 COG0467 RAD55 RecA-superfamily 94.8 0.03 6.5E-07 54.7 4.2 42 181-224 21-62 (260)
408 PF03266 NTPase_1: NTPase; In 94.8 0.02 4.3E-07 51.6 2.7 22 186-207 2-23 (168)
409 KOG3928 Mitochondrial ribosome 94.8 0.67 1.5E-05 46.8 13.3 57 311-367 403-459 (461)
410 PRK14269 phosphate ABC transpo 94.8 0.33 7.2E-06 46.8 11.4 23 184-206 29-51 (246)
411 PRK00889 adenylylsulfate kinas 94.8 0.026 5.7E-07 51.3 3.5 25 182-206 3-27 (175)
412 PF03193 DUF258: Protein of un 94.8 0.046 9.9E-07 48.5 4.8 35 164-206 24-58 (161)
413 TIGR01193 bacteriocin_ABC ABC- 94.8 0.23 5E-06 56.1 11.6 22 184-205 501-522 (708)
414 cd03253 ABCC_ATM1_transporter 94.8 0.36 7.8E-06 46.2 11.5 23 184-206 28-50 (236)
415 cd01129 PulE-GspE PulE/GspE Th 94.8 0.2 4.3E-06 48.9 9.7 78 184-273 81-160 (264)
416 PF05659 RPW8: Arabidopsis bro 94.8 0.46 9.9E-06 41.6 10.9 107 2-125 7-114 (147)
417 PRK09580 sufC cysteine desulfu 94.8 0.34 7.3E-06 46.8 11.4 23 184-206 28-50 (248)
418 TIGR02868 CydC thiol reductant 94.8 0.18 3.9E-06 54.8 10.5 23 183-205 361-383 (529)
419 PRK13657 cyclic beta-1,2-gluca 94.8 0.29 6.3E-06 54.0 12.2 22 184-205 362-383 (588)
420 PRK06217 hypothetical protein; 94.8 0.021 4.5E-07 52.5 2.7 22 185-206 3-24 (183)
421 PRK05201 hslU ATP-dependent pr 94.7 0.044 9.5E-07 56.2 5.1 50 157-206 15-73 (443)
422 PRK15453 phosphoribulokinase; 94.7 0.12 2.7E-06 50.1 7.9 24 182-205 4-27 (290)
423 cd00071 GMPK Guanosine monopho 94.7 0.024 5.2E-07 49.3 2.8 20 186-205 2-21 (137)
424 PRK13947 shikimate kinase; Pro 94.7 0.023 4.9E-07 51.5 2.8 21 185-205 3-23 (171)
425 KOG0651 26S proteasome regulat 94.7 0.13 2.9E-06 49.8 7.9 24 182-205 165-188 (388)
426 PRK06002 fliI flagellum-specif 94.7 0.078 1.7E-06 55.1 6.9 22 184-205 166-187 (450)
427 PRK13765 ATP-dependent proteas 94.7 0.05 1.1E-06 59.5 5.8 74 157-239 31-104 (637)
428 PF08477 Miro: Miro-like prote 94.7 0.026 5.7E-07 47.4 3.0 22 186-207 2-23 (119)
429 TIGR00390 hslU ATP-dependent p 94.7 0.038 8.3E-07 56.5 4.5 50 157-206 12-70 (441)
430 COG2274 SunT ABC-type bacterio 94.7 0.27 6E-06 54.6 11.5 22 184-205 500-521 (709)
431 TIGR03575 selen_PSTK_euk L-ser 94.7 0.089 1.9E-06 52.9 7.0 21 186-206 2-22 (340)
432 COG4133 CcmA ABC-type transpor 94.6 0.52 1.1E-05 42.5 10.9 49 254-302 140-190 (209)
433 PRK09280 F0F1 ATP synthase sub 94.6 0.15 3.2E-06 53.3 8.8 87 184-271 145-247 (463)
434 TIGR00764 lon_rel lon-related 94.6 0.073 1.6E-06 58.3 6.9 73 157-239 18-91 (608)
435 COG5635 Predicted NTPase (NACH 94.6 0.035 7.6E-07 63.4 4.7 183 182-369 221-427 (824)
436 TIGR03411 urea_trans_UrtD urea 94.6 0.37 8E-06 46.4 11.2 23 184-206 29-51 (242)
437 CHL00206 ycf2 Ycf2; Provisiona 94.6 0.37 8.1E-06 58.0 12.7 25 182-206 1629-1653(2281)
438 COG2401 ABC-type ATPase fused 94.6 0.086 1.9E-06 53.1 6.6 62 251-312 514-578 (593)
439 PRK12597 F0F1 ATP synthase sub 94.6 0.069 1.5E-06 55.9 6.3 87 184-271 144-246 (461)
440 PF06309 Torsin: Torsin; Inte 94.6 0.053 1.2E-06 45.6 4.4 49 158-206 26-76 (127)
441 PRK11160 cysteine/glutathione 94.6 0.34 7.5E-06 53.2 12.1 24 183-206 366-389 (574)
442 PRK12678 transcription termina 94.6 0.067 1.5E-06 56.6 6.1 34 168-205 405-438 (672)
443 cd02029 PRK_like Phosphoribulo 94.6 0.093 2E-06 50.5 6.6 77 185-263 1-85 (277)
444 cd03248 ABCC_TAP TAP, the Tran 94.6 0.44 9.6E-06 45.3 11.5 23 184-206 41-63 (226)
445 PRK10875 recD exonuclease V su 94.6 0.12 2.6E-06 56.4 8.3 117 184-303 168-303 (615)
446 TIGR01425 SRP54_euk signal rec 94.5 0.23 5E-06 51.5 9.9 24 182-205 99-122 (429)
447 PRK11176 lipid transporter ATP 94.5 0.22 4.8E-06 54.9 10.6 23 184-206 370-392 (582)
448 KOG0726 26S proteasome regulat 94.5 0.69 1.5E-05 44.5 12.1 55 157-213 185-247 (440)
449 PTZ00185 ATPase alpha subunit; 94.5 0.12 2.7E-06 54.0 7.8 88 185-272 191-299 (574)
450 PRK15115 response regulator Gl 94.5 0.21 4.6E-06 52.9 10.1 132 158-301 135-278 (444)
451 TIGR02203 MsbA_lipidA lipid A 94.5 0.23 5E-06 54.6 10.6 23 184-206 359-381 (571)
452 PRK13949 shikimate kinase; Pro 94.5 0.027 5.8E-07 51.0 2.7 22 185-206 3-24 (169)
453 PRK10078 ribose 1,5-bisphospho 94.5 0.03 6.5E-07 51.6 3.1 22 185-206 4-25 (186)
454 COG2019 AdkA Archaeal adenylat 94.5 0.032 7E-07 48.9 3.0 23 183-205 4-26 (189)
455 cd03243 ABC_MutS_homologs The 94.5 0.06 1.3E-06 50.3 5.1 22 184-205 30-51 (202)
456 PRK00300 gmk guanylate kinase; 94.5 0.03 6.6E-07 52.4 3.1 24 183-206 5-28 (205)
457 PRK14737 gmk guanylate kinase; 94.4 0.034 7.5E-07 51.1 3.3 24 182-205 3-26 (186)
458 PRK12339 2-phosphoglycerate ki 94.4 0.034 7.3E-07 51.6 3.3 24 183-206 3-26 (197)
459 TIGR03880 KaiC_arch_3 KaiC dom 94.4 0.19 4.1E-06 47.7 8.6 41 182-224 15-55 (224)
460 TIGR00041 DTMP_kinase thymidyl 94.4 0.12 2.7E-06 47.8 7.1 23 184-206 4-26 (195)
461 PRK14530 adenylate kinase; Pro 94.4 0.028 6.1E-07 53.1 2.8 21 185-205 5-25 (215)
462 PRK14738 gmk guanylate kinase; 94.4 0.035 7.6E-07 52.0 3.4 24 182-205 12-35 (206)
463 TIGR03375 type_I_sec_LssB type 94.4 0.41 9E-06 53.9 12.6 22 184-205 492-513 (694)
464 cd00820 PEPCK_HprK Phosphoenol 94.4 0.038 8.2E-07 45.3 3.1 21 184-204 16-36 (107)
465 PRK03846 adenylylsulfate kinas 94.4 0.038 8.1E-07 51.5 3.5 24 182-205 23-46 (198)
466 cd03300 ABC_PotA_N PotA is an 94.4 0.49 1.1E-05 45.2 11.3 23 184-206 27-49 (232)
467 TIGR02655 circ_KaiC circadian 94.4 0.099 2.2E-06 55.9 7.1 60 167-233 250-309 (484)
468 TIGR01447 recD exodeoxyribonuc 94.4 0.13 2.9E-06 55.9 8.1 35 265-302 262-296 (586)
469 COG1124 DppF ABC-type dipeptid 94.3 0.051 1.1E-06 50.9 4.1 22 184-205 34-55 (252)
470 cd03284 ABC_MutS1 MutS1 homolo 94.3 0.068 1.5E-06 50.5 5.1 21 184-204 31-51 (216)
471 cd03280 ABC_MutS2 MutS2 homolo 94.3 0.27 5.7E-06 45.9 9.1 21 184-204 29-49 (200)
472 cd00984 DnaB_C DnaB helicase C 94.3 0.23 4.9E-06 47.8 8.9 53 182-237 12-64 (242)
473 cd01132 F1_ATPase_alpha F1 ATP 94.3 0.2 4.3E-06 48.6 8.2 84 184-271 70-170 (274)
474 PF13086 AAA_11: AAA domain; P 94.3 0.074 1.6E-06 50.6 5.5 51 185-235 19-74 (236)
475 PRK09519 recA DNA recombinatio 94.3 0.14 3.1E-06 56.8 8.2 85 181-272 58-148 (790)
476 PRK10416 signal recognition pa 94.3 0.31 6.8E-06 48.8 10.0 25 182-206 113-137 (318)
477 cd03287 ABC_MSH3_euk MutS3 hom 94.3 0.33 7.3E-06 45.9 9.7 118 183-308 31-160 (222)
478 PRK07594 type III secretion sy 94.3 0.21 4.6E-06 51.9 8.9 84 184-271 156-254 (433)
479 PF13479 AAA_24: AAA domain 94.3 0.16 3.5E-06 47.8 7.5 19 185-203 5-23 (213)
480 KOG3347 Predicted nucleotide k 94.3 0.032 6.9E-07 47.9 2.4 68 184-261 8-75 (176)
481 TIGR01313 therm_gnt_kin carboh 94.2 0.027 5.9E-07 50.6 2.2 20 186-205 1-20 (163)
482 COG1224 TIP49 DNA helicase TIP 94.2 0.077 1.7E-06 52.4 5.3 50 155-207 37-89 (450)
483 cd00464 SK Shikimate kinase (S 94.2 0.033 7.2E-07 49.3 2.7 20 186-205 2-21 (154)
484 PRK13545 tagH teichoic acids e 94.2 0.64 1.4E-05 49.5 12.5 23 184-206 51-73 (549)
485 TIGR00958 3a01208 Conjugate Tr 94.2 0.57 1.2E-05 52.9 13.1 24 183-206 507-530 (711)
486 TIGR02857 CydD thiol reductant 94.2 0.56 1.2E-05 51.0 12.7 23 183-205 348-370 (529)
487 PRK11823 DNA repair protein Ra 94.2 0.1 2.2E-06 55.0 6.6 83 182-272 79-166 (446)
488 COG0488 Uup ATPase components 94.2 0.35 7.7E-06 51.8 10.7 130 186-318 351-511 (530)
489 TIGR03796 NHPM_micro_ABC1 NHPM 94.2 0.49 1.1E-05 53.5 12.5 22 184-205 506-527 (710)
490 PF01078 Mg_chelatase: Magnesi 94.1 0.078 1.7E-06 48.9 4.9 42 157-205 3-44 (206)
491 PRK13409 putative ATPase RIL; 94.1 0.47 1E-05 52.0 11.8 23 184-206 366-388 (590)
492 COG0003 ArsA Predicted ATPase 94.1 0.068 1.5E-06 53.3 4.8 49 183-233 2-50 (322)
493 PLN02200 adenylate kinase fami 94.1 0.042 9.1E-07 52.5 3.2 24 182-205 42-65 (234)
494 PRK08927 fliI flagellum-specif 94.1 0.089 1.9E-06 54.6 5.8 85 183-271 158-257 (442)
495 PRK14527 adenylate kinase; Pro 94.1 0.041 9E-07 50.9 3.1 24 182-205 5-28 (191)
496 PF13245 AAA_19: Part of AAA d 94.1 0.047 1E-06 41.9 2.8 22 184-205 11-32 (76)
497 PRK13975 thymidylate kinase; P 94.1 0.041 8.9E-07 51.1 3.1 23 184-206 3-25 (196)
498 COG4240 Predicted kinase [Gene 94.0 0.26 5.7E-06 45.6 7.9 83 181-264 48-135 (300)
499 TIGR03498 FliI_clade3 flagella 94.0 0.25 5.4E-06 51.2 8.9 84 184-271 141-239 (418)
500 TIGR00073 hypB hydrogenase acc 94.0 0.047 1E-06 51.2 3.3 26 181-206 20-45 (207)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-79 Score=673.52 Aligned_cols=566 Identities=30% Similarity=0.461 Sum_probs=462.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 043779 3 EAILQVVLDNLNSLIKNELGLLHGVEKEMEKLSSTLSTIQAVLEDAEEKQLKDKALQNWLRKLKDAAYEVDDLLDEYKTE 82 (581)
Q Consensus 3 ~~~v~~~~~kl~s~l~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~eD~ld~~~~~ 82 (581)
++.++..++++.+++.+++..+.+.++.+..|+++|..+++++++++.++.....+..|.+.+++++|+++|.++.|..+
T Consensus 2 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~ 81 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVE 81 (889)
T ss_pred CeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678899999999999999999999999999999999999999998888889999999999999999999999987
Q ss_pred hhhhcc-ccccccccccccCcchhhhhhHHHHHHHHHHHHHHHHHHHhhcCccccccccc--cccccccccCccccCCcc
Q 043779 83 ASRLAD-DNKVHAAYLTCFRPNVLFHHNIGNRIKDAREMLDGIAEERIKFHLREAVADRR--VEVRARRETGSVVAQPEV 159 (581)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 159 (581)
...... +.............-..+++.....+..+.+++-.+.+....++......... ......+++.+..+...
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~- 160 (889)
T KOG4658|consen 82 EIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD- 160 (889)
T ss_pred HHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-
Confidence 754321 10000000111111114567777777777778777777777776443211111 11112233444444445
Q ss_pred ccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcc-ccCCcCceeEEEecCCCcHhHHHHHHHHhh
Q 043779 160 YGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDR-IKRHFEFRIWVFVFEDFNVRRLMTDIITSS 238 (581)
Q Consensus 160 vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~l~~~il~~l 238 (581)
||.+..++++.+.|..+ +..+++|+||||+||||||+.++|+.. ++.+|+.++||+||++++...++.+|+..+
T Consensus 161 VG~e~~~~kl~~~L~~d-----~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED-----DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERL 235 (889)
T ss_pred ccHHHHHHHHHHHhccC-----CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHh
Confidence 99999999999999875 338999999999999999999999987 999999999999999999999999999988
Q ss_pred CCCCCC--cCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHHh-hCCCCeee
Q 043779 239 GGNVSE--AWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASI-VGTLPVYR 315 (581)
Q Consensus 239 ~~~~~~--~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-~~~~~~~~ 315 (581)
+..... ..+.++++..+.+.|+++||||||||||+. .+|+.+..++|....||+|++|||+..|+.. ++....++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 236 GLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred ccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 764332 223478899999999999999999999976 4699999999999999999999999999998 78778999
Q ss_pred CCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCCCHHHHHHHHhccCcC----CCCC
Q 043779 316 LSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKSNENEWLHVKDSELWN----LPQE 391 (581)
Q Consensus 316 l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~~~~~~~~----~~~~ 391 (581)
++.|+.+|||+||++.+|.......+.++++|++++++|+|+|||++++|+.|+.+.+..+|..+.+...+. .+..
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999999876555566999999999999999999999999999999999999999876554 2333
Q ss_pred CCChhHHHHHHHhcCChHhHHHHHHhcCCCCCCccchhHHHHHHHHcCCcccC-CCCCHHHHHHHHHHHHHHcCCceeec
Q 043779 392 ENSILPALRLSYANLPVELRQCFAFCAVFPKNAEIKKERLIHLWMANGFISSK-GSLEAEAVGNEIFNELYWRSLIQDFA 470 (581)
Q Consensus 392 ~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~-~~~~~~~~~~~~l~~L~~~~ll~~~~ 470 (581)
.+.+..+|.+||+.||++.|.||+|||+||+||.|+++.|+.+|+||||+.+. ++..++++|++|+.+|++++|++...
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 56799999999999999999999999999999999999999999999999884 45789999999999999999999765
Q ss_pred CCCCCccCCeEEeChhHHHHHHHhhc-----cceeEecCC-CC----CCCCCCceeEEEEeeCCCCCcccccccCCCccc
Q 043779 471 GDNGSTYNQIYKMHDLVHDLAQSIAG-----DECCITKAE-RP----SDHLSRQTRHVTFTLSKDSFTIPHALYRVEFSR 540 (581)
Q Consensus 471 ~~~~~~~~~~~~mHdlv~~~~~~~~~-----~e~~~~~~~-~~----~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~lr 540 (581)
..... ..|+|||+|||+|.++|+ +|+++...+ .. ....+..+||+++ +++..... ....++++|+
T Consensus 474 ~~~~~---~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~-~~~~~~~~-~~~~~~~~L~ 548 (889)
T KOG4658|consen 474 DEGRK---ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL-MNNKIEHI-AGSSENPKLR 548 (889)
T ss_pred cccce---eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE-eccchhhc-cCCCCCCccc
Confidence 43111 349999999999999999 676665443 11 1233468899999 66654322 2335566899
Q ss_pred EeeecC------------------CccccccCC---CCCCcccCCccccceEeeCCCCcccC
Q 043779 541 TLLIQP------------------TYPIILTNS---GECPSDISKFHRLRALEFIDPRLTKF 581 (581)
Q Consensus 541 tl~~~~------------------LrvL~l~~~---~~lp~~i~~l~~LryL~l~~~~i~~l 581 (581)
||++++ ||||||+++ .+||++|++|.|||||||++|.|++|
T Consensus 549 tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 549 TLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL 610 (889)
T ss_pred eEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc
Confidence 998765 999999965 57999999999999999999999865
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-45 Score=367.84 Aligned_cols=279 Identities=42% Similarity=0.683 Sum_probs=224.9
Q ss_pred chhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCC
Q 043779 162 REEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN 241 (581)
Q Consensus 162 R~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~ 241 (581)
|+.++++|.++|.... ++.++|+|+||||+||||||.+++++..+..+|+.++|+.++...+...++..|+..++..
T Consensus 1 re~~~~~l~~~L~~~~---~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS---NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTT---TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCC---CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 7889999999998743 4789999999999999999999999767899999999999999999999999999999876
Q ss_pred CC---CcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHHhhCC-CCeeeCC
Q 043779 242 VS---EAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASIVGT-LPVYRLS 317 (581)
Q Consensus 242 ~~---~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~l~ 317 (581)
.. ...+.+++...+.+.+.++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...++++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 43 4567888999999999999999999999864 4888888888877789999999999998877654 5689999
Q ss_pred CCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCCCHHHHHHHHhccCcCCC---CCCCC
Q 043779 318 DLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKSNENEWLHVKDSELWNLP---QEENS 394 (581)
Q Consensus 318 ~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~---~~~~~ 394 (581)
+|+.+|+++||.+.++......++.+.+.+++|+++|+|+||||+++|++|+.+.+..+|..++++...... .....
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999866522334455789999999999999999999999776677889888765444332 23467
Q ss_pred hhHHHHHHHhcCChHhHHHHHHhcCCCCCCccchhHHHHHHHHcCCcccCC
Q 043779 395 ILPALRLSYANLPVELRQCFAFCAVFPKNAEIKKERLIHLWMANGFISSKG 445 (581)
Q Consensus 395 i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~ 445 (581)
+..++.+||+.||++.|.||+|||+||.++.|+++.|+++|+++|||...+
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 999999999999999999999999999999999999999999999998643
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.5e-43 Score=404.84 Aligned_cols=386 Identities=19% Similarity=0.317 Sum_probs=281.7
Q ss_pred cCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEe---cCC-------
Q 043779 155 AQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFV---FED------- 224 (581)
Q Consensus 155 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v---~~~------- 224 (581)
..+++|||+..++++..+|.... +.+++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~---~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES---EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc---CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccc
Confidence 44679999999999999986433 4789999999999999999999999 67788998887642 111
Q ss_pred ----Cc-HhHHHHHHHHhhCCCCC-CcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEe
Q 043779 225 ----FN-VRRLMTDIITSSGGNVS-EAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVT 298 (581)
Q Consensus 225 ----~~-~~~l~~~il~~l~~~~~-~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 298 (581)
++ ...+...++..+..... ..... ..+++.+.++|+||||||||+ ...|+.+.....+.++||+||||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEE
Confidence 01 12334444444322211 11111 346677889999999999975 46788888766677899999999
Q ss_pred cCchhHHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCCCHHHHH
Q 043779 299 TRLAKVASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKSNENEWL 378 (581)
Q Consensus 299 tr~~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~ 378 (581)
||+..++..++...+|+++.|+.++||+||+++||+... ++.++.+++.+|+++|+|+||||+++|+.|+.+ +..+|.
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~ 408 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWM 408 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHH
Confidence 999999988777789999999999999999999997654 456789999999999999999999999999875 678999
Q ss_pred HHHhccCcCCCCCCCChhHHHHHHHhcCCh-HhHHHHHHhcCCCCCCccchhHHHHHHHHcCCcccCCCCCHHHHHHHHH
Q 043779 379 HVKDSELWNLPQEENSILPALRLSYANLPV-ELRQCFAFCAVFPKNAEIKKERLIHLWMANGFISSKGSLEAEAVGNEIF 457 (581)
Q Consensus 379 ~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~l 457 (581)
.++....... ...+..+|++||+.|++ ..|.||+++|+||.++.++. +..|++.+..... ..+
T Consensus 409 ~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~~----------~~l 472 (1153)
T PLN03210 409 DMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLDVN----------IGL 472 (1153)
T ss_pred HHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCCch----------hCh
Confidence 9988764432 34699999999999987 59999999999999875543 6778777654321 228
Q ss_pred HHHHHcCCceeecCCCCCccCCeEEeChhHHHHHHHhhcccee-------EecCCC-----CCCCCCCceeEEEEeeCCC
Q 043779 458 NELYWRSLIQDFAGDNGSTYNQIYKMHDLVHDLAQSIAGDECC-------ITKAER-----PSDHLSRQTRHVTFTLSKD 525 (581)
Q Consensus 458 ~~L~~~~ll~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e~~-------~~~~~~-----~~~~~~~~~r~l~~~~~~~ 525 (581)
+.|+++|||+... +.+.|||++|++|+.+++++.. ...... ........++++++.....
T Consensus 473 ~~L~~ksLi~~~~--------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~ 544 (1153)
T PLN03210 473 KNLVDKSLIHVRE--------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI 544 (1153)
T ss_pred HHHHhcCCEEEcC--------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc
Confidence 9999999998642 2399999999999999987641 111000 0012235677777633321
Q ss_pred CC--cccccccCCCcccEeee-------------------------------cC--------------CccccccCC--C
Q 043779 526 SF--TIPHALYRVEFSRTLLI-------------------------------QP--------------TYPIILTNS--G 556 (581)
Q Consensus 526 ~~--~~~~~~~~~~~lrtl~~-------------------------------~~--------------LrvL~l~~~--~ 556 (581)
.. .....+..|++|+.|-+ .+ |+.|+|.++ +
T Consensus 545 ~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 545 DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE 624 (1153)
T ss_pred ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc
Confidence 11 12233455555555533 11 555555543 4
Q ss_pred CCCcccCCccccceEeeCCCC
Q 043779 557 ECPSDISKFHRLRALEFIDPR 577 (581)
Q Consensus 557 ~lp~~i~~l~~LryL~l~~~~ 577 (581)
.+|..+++|.+|++|+|++++
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~ 645 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSK 645 (1153)
T ss_pred ccccccccCCCCCEEECCCCC
Confidence 567778888888888888764
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.64 E-value=3.3e-14 Score=164.44 Aligned_cols=294 Identities=17% Similarity=0.194 Sum_probs=183.0
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC-CCcHhHHHHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE-DFNVRRLMTDI 234 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i 234 (581)
++.++-|.. |.+.|... ...+++.|+|++|.||||++..+... ++.++|+++.. +.+...++..+
T Consensus 13 ~~~~~~R~r----l~~~l~~~----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 13 LHNTVVRER----LLAKLSGA----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred ccccCcchH----HHHHHhcc----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 345666664 44444322 25679999999999999999998852 23688999864 44556666666
Q ss_pred HHhhCCCCCC-------------cCCHHHHHHHHHHHh-c-CcceEEEEecccccchhhHH-HHhhhcCCCCCCcEEEEe
Q 043779 235 ITSSGGNVSE-------------AWNLDLLQRRLKDML-D-GKRYLLVLDDVWNEDQEKWD-QLKCTLTCGSKGSSVVVT 298 (581)
Q Consensus 235 l~~l~~~~~~-------------~~~~~~l~~~l~~~l-~-~k~~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~iivT 298 (581)
+..+...... ..+...+...+...+ . +.+++|||||++..+..... .+...+....++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 6666311110 012222333232222 2 67899999999876544444 444444455567789899
Q ss_pred cCchh---HHHhhCCCCeeeCC----CCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccC
Q 043779 299 TRLAK---VASIVGTLPVYRLS----DLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFK 371 (581)
Q Consensus 299 tr~~~---v~~~~~~~~~~~l~----~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~ 371 (581)
||... ...........++. +|+.+|+.+||....+..- ++ +.+.+|.+.|+|.|+++..++..+...
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~~---~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---EA---AESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---CH---HHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 99632 11111112245555 9999999999987654321 11 557899999999999999888776544
Q ss_pred CCHHHHHHHHhccCcCCCC-CCCChhHHHHH-HHhcCChHhHHHHHHhcCCCCCCccchhHHHHHHHHcCCcccCCCCCH
Q 043779 372 SNENEWLHVKDSELWNLPQ-EENSILPALRL-SYANLPVELRQCFAFCAVFPKNAEIKKERLIHLWMANGFISSKGSLEA 449 (581)
Q Consensus 372 ~~~~~w~~~~~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~ 449 (581)
..... ... +.+.. ....+...+.- .++.||++.+.++...|+++ . |+.+.+-.+. |
T Consensus 233 ~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~l~~~l~---~---------- 290 (903)
T PRK04841 233 NSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDALIVRVT---G---------- 290 (903)
T ss_pred CCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHHHHHHHc---C----------
Confidence 32100 000 11111 12235655444 48999999999999999997 3 4433322221 1
Q ss_pred HHHHHHHHHHHHHcCCceeecCCCCCccCCeEEeChhHHHHHHHhh
Q 043779 450 EAVGNEIFNELYWRSLIQDFAGDNGSTYNQIYKMHDLVHDLAQSIA 495 (581)
Q Consensus 450 ~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdlv~~~~~~~~ 495 (581)
.+.+...+++|.+.+++.....+ .+ ..|+.|++++++++...
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~-~~---~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDD-SG---EWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecC-CC---CEEehhHHHHHHHHHHH
Confidence 12246779999999997543221 12 34889999999998775
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.52 E-value=1.1e-11 Score=129.25 Aligned_cols=300 Identities=16% Similarity=0.113 Sum_probs=175.9
Q ss_pred cCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH
Q 043779 155 AQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 155 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 234 (581)
.|+.++||++++++|...|.....+ .....+.|+|++|+|||++++.++++.......-..+++++....+...++..+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 4567999999999999998653221 234557899999999999999999854332212235577777777788899999
Q ss_pred HHhhCCC-C-CCcCCHHHHHHHHHHHhc--CcceEEEEecccccc----hhhHHHHhhhcCCCC-CCcEEEEecCchhHH
Q 043779 235 ITSSGGN-V-SEAWNLDLLQRRLKDMLD--GKRYLLVLDDVWNED----QEKWDQLKCTLTCGS-KGSSVVVTTRLAKVA 305 (581)
Q Consensus 235 l~~l~~~-~-~~~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~-~gs~iivTtr~~~v~ 305 (581)
+.++.+. . ....+.+++...+.+.+. +++.+||||+++... ...+..+...+.... ....+|.++....+.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 9988752 2 223355666666766664 456899999996532 223333333322211 123356665544433
Q ss_pred HhhC-------CCCeeeCCCCChHhHHHHHHhhhcCC---CCCCCchHHHHHHHHHHHcCCCchHHHHhhhhh--c--cC
Q 043779 306 SIVG-------TLPVYRLSDLSEDDCWLLFKQRAFGN---DTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLM--H--FK 371 (581)
Q Consensus 306 ~~~~-------~~~~~~l~~L~~~e~~~lf~~~a~~~---~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L--~--~~ 371 (581)
.... ....+.+.+++.++..+++..++... ..-.+..++.+++......|..+.|+.++-.+. . .+
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 2211 12367899999999999998876322 111222222333333333455677777654332 1 11
Q ss_pred -C--CHHHHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHhHHHHHHhcCC-CC-CCccchhHHHHHH--HHc--CCcc
Q 043779 372 -S--NENEWLHVKDSELWNLPQEENSILPALRLSYANLPVELRQCFAFCAVF-PK-NAEIKKERLIHLW--MAN--GFIS 442 (581)
Q Consensus 372 -~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~f-p~-~~~i~~~~Li~~w--~a~--g~i~ 442 (581)
. +.+....+.... -.....-.+..||.+.|..+..++.. .. ...+....+.... +++ |.-
T Consensus 267 ~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~- 335 (394)
T PRK00411 267 SRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE- 335 (394)
T ss_pred CCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC-
Confidence 1 334444444321 12234556889999988877655432 21 1234544444321 221 211
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCceeec
Q 043779 443 SKGSLEAEAVGNEIFNELYWRSLIQDFA 470 (581)
Q Consensus 443 ~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 470 (581)
+-.......|++.|...|+|....
T Consensus 336 ----~~~~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 336 ----PRTHTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred ----cCcHHHHHHHHHHHHhcCCeEEEE
Confidence 112345577999999999998654
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.42 E-value=1.5e-11 Score=130.68 Aligned_cols=298 Identities=18% Similarity=0.208 Sum_probs=192.8
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC-CcHhHHHHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED-FNVRRLMTDI 234 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i 234 (581)
+.+.+-|. ++.+.|... .+.+.+.|..|+|.|||||+.++.. + ...-..+.|.++... .++..+...+
T Consensus 18 ~~~~v~R~----rL~~~L~~~----~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRA----NDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred cccccccH----HHHHHHhcC----CCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHH
Confidence 44555554 555555543 3679999999999999999999975 1 223346889998765 4577777777
Q ss_pred HHhhCCCCCC-------------cCCHHHHHHHHHHHhc--CcceEEEEecccccchhhH-HHHhhhcCCCCCCcEEEEe
Q 043779 235 ITSSGGNVSE-------------AWNLDLLQRRLKDMLD--GKRYLLVLDDVWNEDQEKW-DQLKCTLTCGSKGSSVVVT 298 (581)
Q Consensus 235 l~~l~~~~~~-------------~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~~~~~-~~l~~~l~~~~~gs~iivT 298 (581)
+..+..-.+. ..+...+...+..-+. .++..+||||.+-...... ..+...+....++-.+|+|
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 7777532221 2233334444444333 4689999999876543333 3455556677788899999
Q ss_pred cCchhHH---HhhCCCCeeeCC----CCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccC
Q 043779 299 TRLAKVA---SIVGTLPVYRLS----DLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFK 371 (581)
Q Consensus 299 tr~~~v~---~~~~~~~~~~l~----~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~ 371 (581)
||+..-. +.--....+++. .|+.+|+.++|.......-+ +.-++.+.+..+|-+-|+..++=.++.+
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld------~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD------AADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC------hHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 9965322 211111233333 58999999999886522211 1347899999999999999998888744
Q ss_pred CCHHHHHHHHhccCcCCCCCCCChhHH-HHHHHhcCChHhHHHHHHhcCCCCCCccchhHHHHHHHHcCCcccCCCCCHH
Q 043779 372 SNENEWLHVKDSELWNLPQEENSILPA-LRLSYANLPVELRQCFAFCAVFPKNAEIKKERLIHLWMANGFISSKGSLEAE 450 (581)
Q Consensus 372 ~~~~~w~~~~~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~ 450 (581)
.+.+.-...+ .+....+... ..--++.||+++|..++-||+++. |.. .|+..- +-+
T Consensus 241 ~~~~q~~~~L-------sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~~-eL~~~L------------tg~ 297 (894)
T COG2909 241 TSAEQSLRGL-------SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FND-ELCNAL------------TGE 297 (894)
T ss_pred CcHHHHhhhc-------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hhH-HHHHHH------------hcC
Confidence 4332221111 1111123332 334589999999999999999974 333 233221 234
Q ss_pred HHHHHHHHHHHHcCCceeecCCCCCccCCeEEeChhHHHHHHHhhcc
Q 043779 451 AVGNEIFNELYWRSLIQDFAGDNGSTYNQIYKMHDLVHDLAQSIAGD 497 (581)
Q Consensus 451 ~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~ 497 (581)
+.+...+++|.+++|+-..-++ .+ ..|+.|.++.||.+.....
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd-~~---~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDD-EG---QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecC-CC---ceeehhHHHHHHHHhhhcc
Confidence 5667789999999998643332 22 4599999999999876654
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=1.9e-10 Score=118.66 Aligned_cols=303 Identities=14% Similarity=0.110 Sum_probs=174.9
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc-CC--c-CceeEEEecCCCcHhHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK-RH--F-EFRIWVFVFEDFNVRRLM 231 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~--F-~~~~wv~v~~~~~~~~l~ 231 (581)
|+.++||+.++++|..+|.....+ .....+.|+|++|+|||++++.+++..... .. . -..+|+++....+...++
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 457999999999999998753221 234568899999999999999999843211 11 1 134577777777778889
Q ss_pred HHHHHhhC---CCCC-CcCCHHHHHHHHHHHhc--CcceEEEEecccccc---hhhHHHHhhhc--CC-CCCCcEEEEec
Q 043779 232 TDIITSSG---GNVS-EAWNLDLLQRRLKDMLD--GKRYLLVLDDVWNED---QEKWDQLKCTL--TC-GSKGSSVVVTT 299 (581)
Q Consensus 232 ~~il~~l~---~~~~-~~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l--~~-~~~gs~iivTt 299 (581)
..++.++. ...+ ...+..++...+.+.+. +++++||||+++... ......+.... .. ......+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99998884 2221 22344555555555553 567899999996542 11222232221 11 11233445555
Q ss_pred CchhHHHhh-----CC--CCeeeCCCCChHhHHHHHHhhhcCC--CCCCCchHHHHHHHHHHHcCCCchHHH-Hhhhhh-
Q 043779 300 RLAKVASIV-----GT--LPVYRLSDLSEDDCWLLFKQRAFGN--DTEPPMNILAIAKEIVKKCKGVPLAAK-TLGSLM- 368 (581)
Q Consensus 300 r~~~v~~~~-----~~--~~~~~l~~L~~~e~~~lf~~~a~~~--~~~~~~~l~~~~~~I~~~~~G~PLai~-~~~~~L- 368 (581)
+.......+ .. ...+.+.|.+.++..+++..++... .....++..+.+..++..+.|.|..+. ++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 434332211 11 2368899999999999999886411 111233334455667777789885543 322211
Q ss_pred ---ccC---CCHHHHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHhHHHHHHhcCCC--CCCccchhHHHHHHH-HcC
Q 043779 369 ---HFK---SNENEWLHVKDSELWNLPQEENSILPALRLSYANLPVELRQCFAFCAVFP--KNAEIKKERLIHLWM-ANG 439 (581)
Q Consensus 369 ---~~~---~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp--~~~~i~~~~Li~~w~-a~g 439 (581)
..+ -+.+....+.+.. -.....-++..||.+.+..+..+...- .+..+....+...+- ...
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 111 1222333222221 123344567899998887666554221 233456666665331 111
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCceeecC
Q 043779 440 FISSKGSLEAEAVGNEIFNELYWRSLIQDFAG 471 (581)
Q Consensus 440 ~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~ 471 (581)
.+. -.+........+++.|...|+|.....
T Consensus 323 ~~~--~~~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 323 DIG--VDPLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred hcC--CCCCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 111 112346778889999999999987543
No 8
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.39 E-value=2.7e-12 Score=129.85 Aligned_cols=263 Identities=19% Similarity=0.141 Sum_probs=147.8
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+|+|+++.++.+..++............+.|+|++|+|||+||+.+++.. ...+ .++. .........+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~-~~~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITS-GPALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEe-cccccChHHHHHHHH
Confidence 569999999999988886432222345678899999999999999999843 2221 1111 111111111111221
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCC-------------------CCCCcEEEE
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTC-------------------GSKGSSVVV 297 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~iiv 297 (581)
.+ ++.-+|++|+++.......+.+...+.. ..+.+-|..
T Consensus 99 ~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~a 156 (328)
T PRK00080 99 NL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGA 156 (328)
T ss_pred hc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEee
Confidence 11 2344666777654332222222221110 012344556
Q ss_pred ecCchhHHHhhC--CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCCCHH
Q 043779 298 TTRLAKVASIVG--TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKSNEN 375 (581)
Q Consensus 298 Ttr~~~v~~~~~--~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~ 375 (581)
|++...+...+. ....+++.+++.++..+++.+.+.......++ +.+..|++.|+|.|-.+..+...+.
T Consensus 157 t~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~~~------ 227 (328)
T PRK00080 157 TTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANRLLRRVR------ 227 (328)
T ss_pred cCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHHHHHHHH------
Confidence 666443333221 12368999999999999999887654433332 6789999999999976655444321
Q ss_pred HHHHHHhccCcCCCC-CCCChhHHHHHHHhcCChHhHHHHH-HhcCCCCCCccchhHHHHHHHHcCCcccCCCCCHHHHH
Q 043779 376 EWLHVKDSELWNLPQ-EENSILPALRLSYANLPVELRQCFA-FCAVFPKNAEIKKERLIHLWMANGFISSKGSLEAEAVG 453 (581)
Q Consensus 376 ~w~~~~~~~~~~~~~-~~~~i~~~l~~sy~~L~~~~k~~f~-~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~ 453 (581)
.|....... .... .-......+...+..|++..+..+. .+..|+.+ .+..+.+.... ....+.+
T Consensus 228 ~~a~~~~~~--~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----------g~~~~~~ 293 (328)
T PRK00080 228 DFAQVKGDG--VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----------GEERDTI 293 (328)
T ss_pred HHHHHcCCC--CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----------CCCcchH
Confidence 221111100 0000 0011223445567788888888775 77788766 46666664433 1223445
Q ss_pred HHHHH-HHHHcCCceeec
Q 043779 454 NEIFN-ELYWRSLIQDFA 470 (581)
Q Consensus 454 ~~~l~-~L~~~~ll~~~~ 470 (581)
++.++ .|++.+||+...
T Consensus 294 ~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 294 EDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHhhHHHHHcCCcccCC
Confidence 55566 899999997433
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.39 E-value=1.3e-11 Score=124.05 Aligned_cols=262 Identities=18% Similarity=0.113 Sum_probs=144.5
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+|+|+++.+++|..++............+.++|++|+|||+||+.+++.. ...+. .+......... .+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~~---~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNLK---ITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCEE---EeccchhcCch-hHHHHHH
Confidence 468999999999999886432222345567899999999999999999842 22221 11111001111 1111111
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcC-------------------CCCCCcEEEE
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLT-------------------CGSKGSSVVV 297 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~-------------------~~~~gs~iiv 297 (581)
.+ +...+|++||+........+.+...+. ...+.+-|..
T Consensus 78 ~~----------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 78 NL----------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred hc----------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 11 223456666664333222222222211 1112445666
Q ss_pred ecCchhHHHhh-C-CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCCCHH
Q 043779 298 TTRLAKVASIV-G-TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKSNEN 375 (581)
Q Consensus 298 Ttr~~~v~~~~-~-~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~ 375 (581)
||+...+...+ . ....+++.+++.++..+++.+.+.......++ +.+..|++.|+|.|..+..++..+
T Consensus 136 t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~---~al~~ia~~~~G~pR~~~~ll~~~------- 205 (305)
T TIGR00635 136 TTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEP---EAALEIARRSRGTPRIANRLLRRV------- 205 (305)
T ss_pred cCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCH---HHHHHHHHHhCCCcchHHHHHHHH-------
Confidence 77754443322 1 12367899999999999999887644332222 667899999999998765554432
Q ss_pred HHHHHHhccCcCCCC-CCCChhHHHHHHHhcCChHhHHHHH-HhcCCCCCCccchhHHHHHHHHcCCcccCCCCCHHHHH
Q 043779 376 EWLHVKDSELWNLPQ-EENSILPALRLSYANLPVELRQCFA-FCAVFPKNAEIKKERLIHLWMANGFISSKGSLEAEAVG 453 (581)
Q Consensus 376 ~w~~~~~~~~~~~~~-~~~~i~~~l~~sy~~L~~~~k~~f~-~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~ 453 (581)
|............. .-......+...|..|+++.+..|. .++.++.+ .+..+.+.... | .....+
T Consensus 206 -~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~ 272 (305)
T TIGR00635 206 -RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTI 272 (305)
T ss_pred -HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchH
Confidence 11110000000000 0011222245567888888877766 66777644 45554444332 1 133456
Q ss_pred HHHHH-HHHHcCCceee
Q 043779 454 NEIFN-ELYWRSLIQDF 469 (581)
Q Consensus 454 ~~~l~-~L~~~~ll~~~ 469 (581)
+..++ .|++++||+..
T Consensus 273 ~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 273 EDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHhhhHHHHHcCCcccC
Confidence 67678 69999999743
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.39 E-value=5.3e-11 Score=117.32 Aligned_cols=181 Identities=18% Similarity=0.202 Sum_probs=116.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHH----H
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKD----M 258 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~----~ 258 (581)
..++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..+...++..... .+...+...+.. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 457889999999999999999985332 111 12233 333456778888888888654332 232333333332 2
Q ss_pred -hcCcceEEEEecccccchhhHHHHhhhcCC---CCCCcEEEEecCchhHHHhhCC----------CCeeeCCCCChHhH
Q 043779 259 -LDGKRYLLVLDDVWNEDQEKWDQLKCTLTC---GSKGSSVVVTTRLAKVASIVGT----------LPVYRLSDLSEDDC 324 (581)
Q Consensus 259 -l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~~~~----------~~~~~l~~L~~~e~ 324 (581)
..+++.+||+||+|..+...++.+...... ......|++|... .....+.. ...+.+.+|+.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 257889999999998877777776643321 1223345666543 33222211 23578999999999
Q ss_pred HHHHHhhhcCCCCCCC-chHHHHHHHHHHHcCCCchHHHHhhhhh
Q 043779 325 WLLFKQRAFGNDTEPP-MNILAIAKEIVKKCKGVPLAAKTLGSLM 368 (581)
Q Consensus 325 ~~lf~~~a~~~~~~~~-~~l~~~~~~I~~~~~G~PLai~~~~~~L 368 (581)
.+++...+........ .--.+....|++.|+|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999877643321111 1123789999999999999999888875
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.33 E-value=1.7e-11 Score=118.04 Aligned_cols=196 Identities=20% Similarity=0.220 Sum_probs=101.5
Q ss_pred cccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH------
Q 043779 159 VYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT------ 232 (581)
Q Consensus 159 ~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~------ 232 (581)
|+||+.|+++|.+++... ....+.|+|+.|+|||+|++.+.+. ....-...+|+.............
T Consensus 1 F~gR~~el~~l~~~l~~~-----~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-----PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-----cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHHH
Confidence 789999999999998753 3468889999999999999999983 322211344444433332211111
Q ss_pred -------HHHHhhCCCC-------CCcCCHHHHHHHHHHHhc-CcceEEEEecccccc------hhhHHHHhhhcCC--C
Q 043779 233 -------DIITSSGGNV-------SEAWNLDLLQRRLKDMLD-GKRYLLVLDDVWNED------QEKWDQLKCTLTC--G 289 (581)
Q Consensus 233 -------~il~~l~~~~-------~~~~~~~~l~~~l~~~l~-~k~~LlVlDdv~~~~------~~~~~~l~~~l~~--~ 289 (581)
.+...+.... ........+...+...-+ +++++||+||+.... ......+...+.. .
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 1111111111 001112222222222222 345999999996544 1222334443332 2
Q ss_pred CCCcEEEEecCchhHHHh--------hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHH
Q 043779 290 SKGSSVVVTTRLAKVASI--------VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 290 ~~gs~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai 361 (581)
.....+|+++....+... .+....+.+++|+.+++++++...+... ... +.-.+...+|+..+||+|..|
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHH
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHH
Confidence 233344444443444433 2333469999999999999999865433 111 112355799999999999988
Q ss_pred HH
Q 043779 362 KT 363 (581)
Q Consensus 362 ~~ 363 (581)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 12
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.25 E-value=2.6e-10 Score=127.85 Aligned_cols=315 Identities=16% Similarity=0.175 Sum_probs=187.7
Q ss_pred cccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCcee---EEEecCCCc---HhHHHH
Q 043779 159 VYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRI---WVFVFEDFN---VRRLMT 232 (581)
Q Consensus 159 ~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~---wv~v~~~~~---~~~l~~ 232 (581)
++||+.+++.|...+..... +...++.+.|.+|||||+|+++|.. .+...+...+ +-....+.. ..+.++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~--g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK--GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC--CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHH
Confidence 68999999999999987655 3556999999999999999999988 3333322111 111111111 223333
Q ss_pred HHHHhh-------------------CCC-----------------CC---C--cCCHH-----HHHHHHHHHh-cCcceE
Q 043779 233 DIITSS-------------------GGN-----------------VS---E--AWNLD-----LLQRRLKDML-DGKRYL 265 (581)
Q Consensus 233 ~il~~l-------------------~~~-----------------~~---~--~~~~~-----~l~~~l~~~l-~~k~~L 265 (581)
+++.++ +.. .+ + ..... .....+.... +.++.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 333333 100 00 0 00000 1122222233 356999
Q ss_pred EEEecccccchhhHHHHhhhcCCCCC----CcEEE--EecCch--hHHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCC
Q 043779 266 LVLDDVWNEDQEKWDQLKCTLTCGSK----GSSVV--VTTRLA--KVASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDT 337 (581)
Q Consensus 266 lVlDdv~~~~~~~~~~l~~~l~~~~~----gs~ii--vTtr~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~ 337 (581)
+|+||+++.|....+.+...+..... ...+. .|.+.. .+.........+.|.||+..+...+..........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~ 237 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL 237 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc
Confidence 99999999888777766555443220 11222 223321 12222233458999999999999999988754332
Q ss_pred CCCchHHHHHHHHHHHcCCCchHHHHhhhhhccC------CCHHHHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHhH
Q 043779 338 EPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFK------SNENEWLHVKDSELWNLPQEENSILPALRLSYANLPVELR 411 (581)
Q Consensus 338 ~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 411 (581)
. ..+....|+++..|+|+.+..+-..+..+ .+...|..-..+ ... ....+.+...+..-.+.||...+
T Consensus 238 ~----~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~-~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 238 L----PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGI-LATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred c----cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCC-chhhHHHHHHHHHHHhcCCHHHH
Confidence 2 22678999999999999999988888764 333344221111 111 11112244568888999999999
Q ss_pred HHHHHhcCCCCCCccchhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHcCCceeecCCCCCccCCeE---EeChhHH
Q 043779 412 QCFAFCAVFPKNAEIKKERLIHLWMANGFISSKGSLEAEAVGNEIFNELYWRSLIQDFAGDNGSTYNQIY---KMHDLVH 488 (581)
Q Consensus 412 ~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~---~mHdlv~ 488 (581)
..+...||+... |+.+.|...+.. ....++....+.|....++-..+.-..+...... ..|++|+
T Consensus 312 ~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 312 EVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 999999999755 567777776632 3566666666766666655422111111100112 5699999
Q ss_pred HHHHHhh
Q 043779 489 DLAQSIA 495 (581)
Q Consensus 489 ~~~~~~~ 495 (581)
+.|-+.-
T Consensus 380 qaaY~~i 386 (849)
T COG3899 380 QAAYNLI 386 (849)
T ss_pred HHHhccC
Confidence 8886543
No 13
>PF05729 NACHT: NACHT domain
Probab=99.12 E-value=5.3e-10 Score=101.41 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=88.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCC----cCceeEEEecCCCcHh---HHHHHHHHhhCCCCCCcCCHHHHHHHHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRH----FEFRIWVFVFEDFNVR---RLMTDIITSSGGNVSEAWNLDLLQRRLK 256 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~---~l~~~il~~l~~~~~~~~~~~~l~~~l~ 256 (581)
+++.|+|.+|+||||+++.++.+...... +...+|++........ .+...+......... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 47899999999999999999986443333 3455666665544332 333333333322111 1111 111
Q ss_pred HH-hcCcceEEEEecccccchh-------hHHH-HhhhcCC-CCCCcEEEEecCchhH---HHhhCCCCeeeCCCCChHh
Q 043779 257 DM-LDGKRYLLVLDDVWNEDQE-------KWDQ-LKCTLTC-GSKGSSVVVTTRLAKV---ASIVGTLPVYRLSDLSEDD 323 (581)
Q Consensus 257 ~~-l~~k~~LlVlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~e 323 (581)
.. ...++++||||++.+.... .+.. +...+.. ..++++++||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 11 2468999999999654321 1222 3333332 3578999999997665 3334444589999999999
Q ss_pred HHHHHHhhh
Q 043779 324 CWLLFKQRA 332 (581)
Q Consensus 324 ~~~lf~~~a 332 (581)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997754
No 14
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.08 E-value=1.5e-08 Score=109.03 Aligned_cols=301 Identities=13% Similarity=0.068 Sum_probs=163.2
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc---cCCcC--ceeEEEecCCCcHhHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI---KRHFE--FRIWVFVFEDFNVRRL 230 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~F~--~~~wv~v~~~~~~~~l 230 (581)
|+.+.||++|+++|...|.....+.....++.|+|++|+|||++++.|...... ....+ ..++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 467999999999999988764433233467889999999999999999874321 11222 2457777777778888
Q ss_pred HHHHHHhhCCCCC-CcCCHHHHHHHHHHHhc---CcceEEEEecccccchhhHHHHhhhcC-CCCCCcEEEE--ecCchh
Q 043779 231 MTDIITSSGGNVS-EAWNLDLLQRRLKDMLD---GKRYLLVLDDVWNEDQEKWDQLKCTLT-CGSKGSSVVV--TTRLAK 303 (581)
Q Consensus 231 ~~~il~~l~~~~~-~~~~~~~l~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~iiv--Ttr~~~ 303 (581)
+..|..++.+..+ ......+....+...+. +...+||||+++......-+.|...+. ....+++|+| +|...+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 8888888854432 23333344444444432 234699999996432111122332222 1123445444 343222
Q ss_pred --------HHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCc-hHHHHHHHHHHHcCCCchHHHHhhhhhccCC--
Q 043779 304 --------VASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPM-NILAIAKEIVKKCKGVPLAAKTLGSLMHFKS-- 372 (581)
Q Consensus 304 --------v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~-~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~-- 372 (581)
+...++ ...+...|.+.++..+++..++.......++ .++-+++.++...|-.=.||.++-.+.....
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegs 992 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQ 992 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCC
Confidence 112222 1246779999999999999988643221222 2333333333333444556655544432211
Q ss_pred --CHHHHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHhHHHHHHhcCC-CC--CCccchhHHHHHH--HHc--C-Ccc
Q 043779 373 --NENEWLHVKDSELWNLPQEENSILPALRLSYANLPVELRQCFAFCAVF-PK--NAEIKKERLIHLW--MAN--G-FIS 442 (581)
Q Consensus 373 --~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~f-p~--~~~i~~~~Li~~w--~a~--g-~i~ 442 (581)
..+.-..+.+.. ....+.-....||.+.|..+..+... -. ...++...+.... +++ | .+.
T Consensus 993 kVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iG 1062 (1164)
T PTZ00112 993 KIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIG 1062 (1164)
T ss_pred ccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcC
Confidence 111111111110 11123345567898887666533322 11 2235544444332 222 1 111
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCceeec
Q 043779 443 SKGSLEAEAVGNEIFNELYWRSLIQDFA 470 (581)
Q Consensus 443 ~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 470 (581)
.. ...+ ....|+.+|...|+|-...
T Consensus 1063 -v~-plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1063 -MC-SNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred -CC-CcHH-HHHHHHHHHHhcCeEEecC
Confidence 11 1223 7788999999999987543
No 15
>PRK06893 DNA replication initiation factor; Validated
Probab=98.99 E-value=9.4e-09 Score=98.20 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=97.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGK 262 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 262 (581)
.+.+.|+|++|+|||+|++.+++. .......+.|++..... .... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-c
Confidence 357889999999999999999984 22223345566653110 0000 0111111 3
Q ss_pred ceEEEEecccccc-hhhHHH-HhhhcCCC-CCCcEE-EEecCc---------hhHHHhhCCCCeeeCCCCChHhHHHHHH
Q 043779 263 RYLLVLDDVWNED-QEKWDQ-LKCTLTCG-SKGSSV-VVTTRL---------AKVASIVGTLPVYRLSDLSEDDCWLLFK 329 (581)
Q Consensus 263 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~i-ivTtr~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~ 329 (581)
.-+|+|||+|... ...|+. +...+... ..|..+ |+|++. +.+.+.+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3599999998642 234542 33333321 234555 455553 3566666666789999999999999999
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhh
Q 043779 330 QRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLM 368 (581)
Q Consensus 330 ~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L 368 (581)
+.+.......++ ++..-|++++.|..-.+..+-..|
T Consensus 172 ~~a~~~~l~l~~---~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIELSD---EVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHHHHH
Confidence 988754433332 778899999998887776544433
No 16
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.97 E-value=1.1e-08 Score=94.09 Aligned_cols=181 Identities=23% Similarity=0.230 Sum_probs=104.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
++|+|.++-++.+.-++......++.+..+.+||+||+||||||..+.+ .....|. + .+.+ .+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~--~sg~-~i--------- 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---I--TSGP-AI--------- 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---E--EECC-C----------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---e--ccch-hh---------
Confidence 5799999888887666553322234677888999999999999999998 4444442 1 1111 00
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC--------CC-----------cEEEE
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS--------KG-----------SSVVV 297 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~g-----------s~iiv 297 (581)
....++...+.. + +++.+|++|+++..+...-+.+..++.++. ++ +-|=.
T Consensus 87 ---------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 87 ---------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp ----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred ---------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 011222222222 1 245688889998877766666766654331 11 22446
Q ss_pred ecCchhHHHhhCCCC--eeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhh
Q 043779 298 TTRLAKVASIVGTLP--VYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLM 368 (581)
Q Consensus 298 Ttr~~~v~~~~~~~~--~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L 368 (581)
|||...+...+.... ..+++..+.+|-..+..+.+..-+... -++.+.+|+++|.|.|--+.-+-...
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 788665555443322 458999999999999998775544322 23779999999999998766554444
No 17
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.90 E-value=8.6e-08 Score=100.07 Aligned_cols=177 Identities=20% Similarity=0.217 Sum_probs=106.8
Q ss_pred CccccchhhHHH---HHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHH
Q 043779 157 PEVYGREEDKEK---IVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 157 ~~~vGR~~~~~~---l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 233 (581)
++++|++..+.. +..++... ....+.++|++|+||||||+.+++. .... |+.++.......-+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~-----~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG-----RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC-----CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHH
Confidence 457888877655 77777542 4456778999999999999999873 2222 3333322111111111
Q ss_pred HHHhhCCCCCCcCCHHHHHHHHHH-HhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEE--ecCchh--H-HHh
Q 043779 234 IITSSGGNVSEAWNLDLLQRRLKD-MLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVV--TTRLAK--V-ASI 307 (581)
Q Consensus 234 il~~l~~~~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v-~~~ 307 (581)
++ ..... ...+++.+|++|+++.......+.+...+.. +..++| ||.+.. + ...
T Consensus 80 ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 11 11111 1235788999999988776667777666553 444444 344332 1 112
Q ss_pred hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhh
Q 043779 308 VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLG 365 (581)
Q Consensus 308 ~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~ 365 (581)
......+.+.+++.++...++.+.+.........--.+....|++.|+|.|..+.-+.
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 2334589999999999999998865321100001113667889999999998775443
No 18
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=2.3e-07 Score=99.62 Aligned_cols=197 Identities=12% Similarity=0.085 Sum_probs=119.0
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+..++.|.+++.... -...+.++|..|+||||+|+.+.+.......+.. ..++.+. ....|..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~C~----sCr~I~~ 84 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGVCR----ACREIDE 84 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcccH----HHHHHhc
Confidence 468999999999999987532 2345679999999999999988873221111100 0011000 0111100
Q ss_pred h-----hCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh-HHH
Q 043779 237 S-----SGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK-VAS 306 (581)
Q Consensus 237 ~-----l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~ 306 (581)
. +..........+++.+.+... ..++.-++|||+++..+...++.|...+.......++|+||++.+ +..
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 0 000000111233333333221 124556899999998888889988888876666778777777543 322
Q ss_pred -hhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCch-HHHHhhhh
Q 043779 307 -IVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPL-AAKTLGSL 367 (581)
Q Consensus 307 -~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PL-ai~~~~~~ 367 (581)
..+....+++.+++.++..+.+.+.+.......+ .+....|++.++|... ++.++-..
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQA 224 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQA 224 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2233458999999999999999887654332222 2667899999998664 55554443
No 19
>PRK04195 replication factor C large subunit; Provisional
Probab=98.87 E-value=2.7e-07 Score=98.26 Aligned_cols=247 Identities=16% Similarity=0.134 Sum_probs=140.0
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+..++.+.+|+.....+ ...+.+.|+|++|+||||+|+.++++. .|+. +-++.+...+ ...+..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g-~~~~~lLL~GppG~GKTtla~ala~el----~~~~-ielnasd~r~-~~~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG-KPKKALLLYGPPGVGKTSLAHALANDY----GWEV-IELNASDQRT-ADVIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHc----CCCE-EEEccccccc-HHHHHHHHH
Confidence 46899999999999999754322 236788899999999999999999843 1222 2223333222 122222222
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccch----hhHHHHhhhcCCCCCCcEEEEecCchh-HHH--hhC
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ----EKWDQLKCTLTCGSKGSSVVVTTRLAK-VAS--IVG 309 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~--~~~ 309 (581)
...... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+.. ... .-.
T Consensus 87 ~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 87 EAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred HhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhc
Confidence 211110 00113678999999965432 335556555542 2345666664321 211 112
Q ss_pred CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCC---CHHHHHHHHhccCc
Q 043779 310 TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKS---NENEWLHVKDSELW 386 (581)
Q Consensus 310 ~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~---~~~~w~~~~~~~~~ 386 (581)
....+++.+++.++....+.+.+.......++ ++...|++.++|..-.+......+.... +.+....+..
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~---eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~---- 223 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGIECDD---EALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR---- 223 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc----
Confidence 34578999999999999888876544332332 6788999999998777654333333321 2222222221
Q ss_pred CCCCCCCChhHHHHHHHh-cCChHhHHHHHHhcCCCCCCccchhHHHHHHHHcCCccc
Q 043779 387 NLPQEENSILPALRLSYA-NLPVELRQCFAFCAVFPKNAEIKKERLIHLWMANGFISS 443 (581)
Q Consensus 387 ~~~~~~~~i~~~l~~sy~-~L~~~~k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~ 443 (581)
.....++..++..-+. .-+......+..+. ++- ..+..|+.+.+...
T Consensus 224 --~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 --RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred --CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 1223456666666554 22333333322221 222 35778999988764
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.86 E-value=2.4e-08 Score=98.17 Aligned_cols=153 Identities=22% Similarity=0.266 Sum_probs=94.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHH-HHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRL-KDMLD 260 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l-~~~l~ 260 (581)
.+....+||+||+||||||+.+.. .....| ..++...+-..-++.+ .+.- +....
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i-----------------~e~a~~~~~~ 102 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREI-----------------IEEARKNRLL 102 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHH-----------------HHHHHHHHhc
Confidence 556666999999999999999987 344333 3333332222112222 2222 22334
Q ss_pred CcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEE--ecCchhH---HHhhCCCCeeeCCCCChHhHHHHHHhhhcCC
Q 043779 261 GKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVV--TTRLAKV---ASIVGTLPVYRLSDLSEDDCWLLFKQRAFGN 335 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~ 335 (581)
+++.+|++|.|+..+..+-+.+...+ .+|.-|+| ||-++.. ....+...++.+++|+.++...++.+.+...
T Consensus 103 gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred CCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence 88999999999887666555555444 46666666 4555432 2223455699999999999999998843221
Q ss_pred CCCC---Cc-hHHHHHHHHHHHcCCCchHH
Q 043779 336 DTEP---PM-NILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 336 ~~~~---~~-~l~~~~~~I~~~~~G~PLai 361 (581)
.... .. --+++...|+..++|--.++
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 1100 11 11356778888888876544
No 21
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.84 E-value=4e-08 Score=94.08 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=100.4
Q ss_pred chhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCC
Q 043779 162 REEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN 241 (581)
Q Consensus 162 R~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~ 241 (581)
....++.+..++.. .....+.|+|++|+|||+||+.+++.. .......++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~-----~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG-----KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD------- 81 (226)
T ss_pred cHHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH-------
Confidence 34566677776542 244678899999999999999998742 22223344554432111 00
Q ss_pred CCCcCCHHHHHHHHHHHhcCcceEEEEecccccchh-h-HHHHhhhcCC-CCCCcEEEEecCchh---------HHHhhC
Q 043779 242 VSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQE-K-WDQLKCTLTC-GSKGSSVVVTTRLAK---------VASIVG 309 (581)
Q Consensus 242 ~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~-~-~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~ 309 (581)
.. +...+. +.-+|||||++..... . .+.+...+.. ...+..+|+||+... +...+.
T Consensus 82 -------~~----~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 82 -------PE----VLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -------HH----HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 00 111122 2348999999754322 2 2334443331 123347888887432 222333
Q ss_pred CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhh
Q 043779 310 TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSL 367 (581)
Q Consensus 310 ~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~ 367 (581)
....+++.+++.++...++...+.......++ +..+.|++.+.|+|..+.-+...
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARRGLQLPD---EVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHHHH
Confidence 23578999999999999988755322222222 66788888899999888755443
No 22
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1.8e-07 Score=95.91 Aligned_cols=192 Identities=15% Similarity=0.158 Sum_probs=113.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+..++.+...+... .-...+.++|++|+||||+|+.+.+........... .+.... ....+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~----~c~~~~~ 84 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCI----ICKEIEK 84 (363)
T ss_pred hhccChHHHHHHHHHHHHcC----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCH----HHHHHhc
Confidence 46899999999999888753 133467899999999999999998742111111000 000000 0111110
Q ss_pred hhCC-----CCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHH
Q 043779 237 SSGG-----NVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVAS 306 (581)
Q Consensus 237 ~l~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~ 306 (581)
.... ........++....+... ..+++-++|+|+++......++.+...+.......++|++|.+. .+..
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 0000 000001222222222211 12355699999998877777888888887666677777766543 3332
Q ss_pred h-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 307 I-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 307 ~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
. .+....+++.+++.++..+++...+...+...+ .+.+..|++.++|.|..+.
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2 233458999999999999988876543322122 2567889999999886544
No 23
>PTZ00202 tuzin; Provisional
Probab=98.84 E-value=5.6e-07 Score=90.41 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=105.5
Q ss_pred ccccCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHH
Q 043779 152 SVVAQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLM 231 (581)
Q Consensus 152 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~ 231 (581)
.+.+.+.|+||+.+...|...|..... ...+++.|+|++|+|||||++.+..... + .+++.... +..+++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~--~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElL 326 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT--AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTL 326 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC--CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHH
Confidence 345567899999999999999975433 2456999999999999999999996322 1 23333333 679999
Q ss_pred HHHHHhhCCCCCCc--CCHHHHHHHHHHHh-c-CcceEEEEecccccch-hhHHHHhhhcCCCCCCcEEEEecCchhHHH
Q 043779 232 TDIITSSGGNVSEA--WNLDLLQRRLKDML-D-GKRYLLVLDDVWNEDQ-EKWDQLKCTLTCGSKGSSVVVTTRLAKVAS 306 (581)
Q Consensus 232 ~~il~~l~~~~~~~--~~~~~l~~~l~~~l-~-~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 306 (581)
..++.+|+.+.... .-.+.+.+.+.+.- . +++.+||+-=-...+- -.+++.. .|.+...-|.|++---.+.+.-
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcch
Confidence 99999998632211 11233444443322 2 5667777643221111 1122221 3445556677877654333322
Q ss_pred hh---CCCCeeeCCCCChHhHHHHHHhhh
Q 043779 307 IV---GTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 307 ~~---~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
.. .....|.+.+++.++|.++..+..
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11 112378899999999999887654
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.83 E-value=1e-07 Score=97.33 Aligned_cols=198 Identities=14% Similarity=0.116 Sum_probs=112.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCc-eeEEEecCCCcH-hHHHH--
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF-RIWVFVFEDFNV-RRLMT-- 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~-~~l~~-- 232 (581)
++++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+.. .+.++++...+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-----~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-----NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcC
Confidence 46889999999999988643 334677999999999999999987321 112221 233333221100 00000
Q ss_pred -HHHHhhCCC-CCCcCCHHHHHHHHHHHh-----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hH
Q 043779 233 -DIITSSGGN-VSEAWNLDLLQRRLKDML-----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KV 304 (581)
Q Consensus 233 -~il~~l~~~-~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v 304 (581)
.....++.. .......+.....++... .+.+-+||+||+..........+...+......+++|+||... .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 000011222222222221 1344589999997665555566666665545567788777533 22
Q ss_pred HHhh-CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 305 ASIV-GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 305 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
...+ .....+++.+++.++...++.+.+.......+ .+.+..+++.++|.+-.+..
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2222 22347889999999999999887644332222 26788899999998766543
No 25
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.6e-07 Score=94.44 Aligned_cols=179 Identities=16% Similarity=0.213 Sum_probs=116.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCc----cccCCcCceeEEEe-cCCCcHhHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDD----RIKRHFEFRIWVFV-FEDFNVRRLM 231 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-~~~~~~~~l~ 231 (581)
.+++|-+..++.+..++... .-.....++|+.|+||||+|+.++... ....+.+...|... +....+.+ .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 35789888899999998653 234567899999999999999988731 12234444444331 12222222 1
Q ss_pred HHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHH-H-hhC
Q 043779 232 TDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVA-S-IVG 309 (581)
Q Consensus 232 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~-~~~ 309 (581)
+++...+... -..+++-++|+|+++..+...++.+...+....+++.+|++|.+.+.. . ...
T Consensus 79 r~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 1122211110 012456688888887778888999999999888889888888655321 1 123
Q ss_pred CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 310 TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 310 ~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
....+++.+++.++...++.+...+. + .+.+..++..++|.|.-+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYNDI----K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcCC----C---HHHHHHHHHHcCCCHHHHHH
Confidence 34589999999999988887654211 1 13467889999999876543
No 26
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=2.2e-08 Score=105.88 Aligned_cols=196 Identities=18% Similarity=0.143 Sum_probs=117.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
++++|-+..++.|..++.... -...+.++|++|+||||+|+.+++.....+.+...+|.|.+-. .+......-+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceE
Confidence 468999999999988887542 2345689999999999999999874322222322334332110 00000000000
Q ss_pred hhCCCCCCcCCHHHHHH---HHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC-chhHHHhh-CC
Q 043779 237 SSGGNVSEAWNLDLLQR---RLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR-LAKVASIV-GT 310 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~-~~ 310 (581)
.+... .....+.+.. .+... ..+++-++|+|+++......++.+...+......+.+|++|. ...+...+ ..
T Consensus 89 el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 89 EIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred Eeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 11111 1112222222 22111 124567999999988777788888888876655666665554 33333322 33
Q ss_pred CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 311 LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 311 ~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
...+++.+++.++...++.+.+...+...+ .+.+..|++.++|.+--+.
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAE 215 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 458999999999999999887654332222 2668899999999986553
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.82 E-value=1.3e-08 Score=88.40 Aligned_cols=118 Identities=25% Similarity=0.257 Sum_probs=82.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCcccc---CCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIK---RHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDM 258 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~ 258 (581)
+.+++.|+|++|+|||++++.+.++.... ..-...+|+.+....+...+...++..++.......+...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34688999999999999999999842110 012345699988888899999999999987766656677777877777
Q ss_pred hcCcc-eEEEEeccccc-chhhHHHHhhhcCCCCCCcEEEEecCc
Q 043779 259 LDGKR-YLLVLDDVWNE-DQEKWDQLKCTLTCGSKGSSVVVTTRL 301 (581)
Q Consensus 259 l~~k~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 301 (581)
+...+ .+||+|+++.. +...++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76544 59999999766 5555666655444 566677777663
No 28
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.5e-07 Score=103.01 Aligned_cols=200 Identities=14% Similarity=0.108 Sum_probs=116.5
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCc-eeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF-RIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~l~~~il 235 (581)
.++||.+..++.|.+++.... -...+.++|++|+||||+|+.+++...-...... -+..| ..+..+.......+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C-~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC-SSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc-hHHHHHhcCCCceE
Confidence 468999999999999887531 2345579999999999999999974221111000 00000 00000000000000
Q ss_pred HhhCCC-CCCcCCHHHHHHHHHH-HhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC-chhHHHh-hCCC
Q 043779 236 TSSGGN-VSEAWNLDLLQRRLKD-MLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR-LAKVASI-VGTL 311 (581)
Q Consensus 236 ~~l~~~-~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~-~~~~ 311 (581)
-.+... ........++...+.. -..+++-++|||+++......++.|+..+.......++|++|. ...+... ....
T Consensus 91 iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRC 170 (944)
T PRK14949 91 IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC 170 (944)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhh
Confidence 000000 0011112222222211 1235677999999998888888998888876666666666555 3444322 3334
Q ss_pred CeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 312 PVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 312 ~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
..|++.+|+.++...++.+.+........ .+.+..|++.++|.|.-+..+
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 68999999999999998886643222111 256888999999998655433
No 29
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.79 E-value=9.4e-09 Score=95.06 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=33.9
Q ss_pred ccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc
Q 043779 158 EVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK 210 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 210 (581)
.|+||+.+++++...|... .....+.+.|+|++|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA--QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT--SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH--HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999622 22456899999999999999999998854433
No 30
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.9e-07 Score=99.22 Aligned_cols=192 Identities=14% Similarity=0.106 Sum_probs=116.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+...+.|..++.... -...+.++|++|+||||+|+.+++........... .+..+ .....+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~---pCg~C----~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTST---PCEVC----ATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCC---CCccC----HHHHHHhc
Confidence 468999999999999997542 34577899999999999999998732111100000 00000 00011100
Q ss_pred hhCC-----CCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHH-
Q 043779 237 SSGG-----NVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVA- 305 (581)
Q Consensus 237 ~l~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~- 305 (581)
.-.. ........+++.+.+... ..++.-++|+|+++..+....+.+...+.....+..+|++|.+. .+.
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 0000 000011233333322221 23566799999998887778888888887666667777776643 232
Q ss_pred HhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 306 SIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 306 ~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
........+++.+++.++....+.+.+...+.... .+....|++.++|.+..+.
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 22244468999999999999998877654332222 2567889999999886554
No 31
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=2.2e-07 Score=98.45 Aligned_cols=196 Identities=13% Similarity=0.108 Sum_probs=116.0
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCC--cCceeEEEecCCCcHhHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRH--FEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~l~~~i 234 (581)
.++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...-... -.....-.++.+ .....|
T Consensus 16 ddVIGQe~vv~~L~~al~~gR----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C----~sC~~I 87 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC----RACTEI 87 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc----HHHHHH
Confidence 468999999999999997642 3345679999999999999999873211000 000000000000 001111
Q ss_pred HHh-----hCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC-chhH
Q 043779 235 ITS-----SGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR-LAKV 304 (581)
Q Consensus 235 l~~-----l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v 304 (581)
... +..........+++.+.+... ..++.-++|||+++..+...++.|...+.....++++|++|. ...+
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 000 000000112234444333322 135667999999998888888888888876555666555554 4444
Q ss_pred HHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 305 ASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 305 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
... .+....+.+.+++.++..+.+.+.+........ .+....|++.++|.|.....
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 322 233458999999999999988876543322222 25568899999999975543
No 32
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=7.6e-07 Score=90.36 Aligned_cols=295 Identities=16% Similarity=0.161 Sum_probs=170.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
..+.+|+.+++++...|...-.+. .+.-+.|+|.+|+|||+.++.+....+....=...++|++....+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~-~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGE-RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCC-CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 348899999999999887654332 3334889999999999999999984322211112689999999999999999999
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhc--CcceEEEEecccccchhhHHHHhhhcCCCCC-CcE--EEEecCchhHHHh----
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLD--GKRYLLVLDDVWNEDQEKWDQLKCTLTCGSK-GSS--VVVTTRLAKVASI---- 307 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~--iivTtr~~~v~~~---- 307 (581)
.++..+.......+....+.+.+. ++.+++|||++.......-+.+...+..... .++ +|..+.+..+...
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 998655556666677777777665 5789999999954321111333333332222 343 3444444433222
Q ss_pred ----hCCCCeeeCCCCChHhHHHHHHhhhcCC--CCCCCchHHHHHHHHHHHcCC-CchHHHHhhhh--hccCC-----C
Q 043779 308 ----VGTLPVYRLSDLSEDDCWLLFKQRAFGN--DTEPPMNILAIAKEIVKKCKG-VPLAAKTLGSL--MHFKS-----N 373 (581)
Q Consensus 308 ----~~~~~~~~l~~L~~~e~~~lf~~~a~~~--~~~~~~~l~~~~~~I~~~~~G-~PLai~~~~~~--L~~~~-----~ 373 (581)
++.. .+...|-+.+|-..++..++-.. ......+..+++..++..-+| -=.||.++-.. ++... +
T Consensus 176 v~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~ 254 (366)
T COG1474 176 VKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVS 254 (366)
T ss_pred hhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcC
Confidence 2222 47788999999999999887432 112334444555555555554 33444443322 11110 1
Q ss_pred HHHHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHhHHHHHHhcCCCCCCccchhHHHHH--HHHcCCcccCCCCCHHH
Q 043779 374 ENEWLHVKDSELWNLPQEENSILPALRLSYANLPVELRQCFAFCAVFPKNAEIKKERLIHL--WMANGFISSKGSLEAEA 451 (581)
Q Consensus 374 ~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~Li~~--w~a~g~i~~~~~~~~~~ 451 (581)
.+.-..+... .-...+.-....||.+.|-.+.....-- ..+....+-.. ++.+.+-. ...
T Consensus 255 ~~~v~~a~~~----------~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~------~~~ 316 (366)
T COG1474 255 EDHVREAQEE----------IERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT------SQR 316 (366)
T ss_pred HHHHHHHHHH----------hhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc------hHH
Confidence 1111111100 0122344457888988777655433331 22333333222 11111110 344
Q ss_pred HHHHHHHHHHHcCCceeecC
Q 043779 452 VGNEIFNELYWRSLIQDFAG 471 (581)
Q Consensus 452 ~~~~~l~~L~~~~ll~~~~~ 471 (581)
.-.+++++|...|++.....
T Consensus 317 ~~~~ii~~L~~lgiv~~~~~ 336 (366)
T COG1474 317 RFSDIISELEGLGIVSASLI 336 (366)
T ss_pred HHHHHHHHHHhcCeEEeeec
Confidence 55677888888888875443
No 33
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.72 E-value=5e-07 Score=91.38 Aligned_cols=181 Identities=16% Similarity=0.160 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEec--CCCcHhHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVF--EDFNVRRLMTDI 234 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~--~~~~~~~l~~~i 234 (581)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+.. .++.+. ...... .....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~-----~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK-----NMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HHHHH
Confidence 45889999999999998643 334568999999999999999987421 111211 122221 111111 11111
Q ss_pred HHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHHh-hCCCC
Q 043779 235 ITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVASI-VGTLP 312 (581)
Q Consensus 235 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~ 312 (581)
+..+....+ .....+-++++|++..........+...+......+.+|+++... .+... .....
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111100000 001235689999997665555667777776555667777776432 22111 12234
Q ss_pred eeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 313 VYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 313 ~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
.+++.+++.++...++...+...+...+ .+.+..+++.++|.+.-+.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 6899999999999998887754332222 2568889999999987654
No 34
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=4.3e-07 Score=96.36 Aligned_cols=185 Identities=20% Similarity=0.173 Sum_probs=114.0
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC-------------------CcCcee
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR-------------------HFEFRI 217 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 217 (581)
.+++|-+..++.|...+... .-...+.++|++|+||||+|+.+++...-.. .|...+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 46889999999999988753 2334577999999999999999986321100 011111
Q ss_pred EEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEE
Q 043779 218 WVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVV 296 (581)
Q Consensus 218 wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 296 (581)
++.......+ .+..++...+... ..+++-++|+|+++..+...++.+...+......+.+|
T Consensus 92 eidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 92 EIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 1111111111 1112222222211 23566799999998888788888888888766666655
Q ss_pred E-ecCchhHHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCch-HHHHhhh
Q 043779 297 V-TTRLAKVASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPL-AAKTLGS 366 (581)
Q Consensus 297 v-Ttr~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PL-ai~~~~~ 366 (581)
+ ||....+... ......+++.+++.++....+.+.+...+.... ......|++.++|.+. |+..+-.
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4 5443334322 334468999999999998888875533222122 2567889999999775 4444433
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=98.72 E-value=3.3e-07 Score=92.35 Aligned_cols=183 Identities=13% Similarity=0.129 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCce-eEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFR-IWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~-~wv~v~~~~~~~~l~~~il 235 (581)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|+.+++.. ....|... +-++.+...+.. ..+.++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~-----~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG-----NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHH
Confidence 46789888888888877642 34456799999999999999998732 12222211 111111111111 111111
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHHh-hCCCCe
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVASI-VGTLPV 313 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~ 313 (581)
..+..... ....++.-+++||+++.......+.+...+......+++|+++... .+... ......
T Consensus 86 ~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 11100000 0001346699999998777666667776666555667777777532 22111 122347
Q ss_pred eeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 314 YRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 314 ~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
+++.+++.++....+...+...+...++ +....|++.++|..-.+.
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~~---~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYVP---EGLEAIIFTADGDMRQAL 198 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 8999999999999988877543332222 568899999999875554
No 36
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.71 E-value=3e-06 Score=92.39 Aligned_cols=203 Identities=19% Similarity=0.184 Sum_probs=121.8
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc---CceeEEEecCC---CcHhHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF---EFRIWVFVFED---FNVRRL 230 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~---~~~~~l 230 (581)
++++|++..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~-----~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP-----FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC-----CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 36889999999888777432 34568899999999999999998754333332 12346655321 112222
Q ss_pred HHHH---------------HHhhCCCC----------------CCcC-CHHHHHHHHHHHhcCcceEEEEecccccchhh
Q 043779 231 MTDI---------------ITSSGGNV----------------SEAW-NLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEK 278 (581)
Q Consensus 231 ~~~i---------------l~~l~~~~----------------~~~~-~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~ 278 (581)
...+ +...+... ++.. =....+..+...+.++++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 11111000 0011 11235667777888888888888777776677
Q ss_pred HHHHhhhcCCCCCCcEEEE--ecCchhH-HHhh-CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHc
Q 043779 279 WDQLKCTLTCGSKGSSVVV--TTRLAKV-ASIV-GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKC 354 (581)
Q Consensus 279 ~~~l~~~l~~~~~gs~iiv--Ttr~~~v-~~~~-~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~ 354 (581)
|+.+...+....+...+++ ||++... ...+ .....+.+.+++.+|.+.++.+.+.......+ .++...|.+.+
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys 385 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYT 385 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCC
Confidence 8888776666655555555 5664321 1111 22346789999999999999987653322222 24556666666
Q ss_pred CCCchHHHHhhhh
Q 043779 355 KGVPLAAKTLGSL 367 (581)
Q Consensus 355 ~G~PLai~~~~~~ 367 (581)
..-+-++..++.+
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 5556777766554
No 37
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.71 E-value=3.5e-07 Score=85.97 Aligned_cols=181 Identities=20% Similarity=0.173 Sum_probs=115.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+|+|.++-++++.=++.....+++.+..+.++|+||.||||||.-+++. ...++... .+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k~t----sGp~------------ 87 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLKIT----SGPA------------ 87 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeEec----cccc------------
Confidence 47999999998888888766555667889999999999999999999983 33332211 1000
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCC--------CCCcE-----------EEE
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCG--------SKGSS-----------VVV 297 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs~-----------iiv 297 (581)
.....++...+.. | .+.=+|++|.++......-+.+..++.+. +++++ |=-
T Consensus 88 --------leK~gDlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 88 --------LEKPGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred --------ccChhhHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 0111222222222 2 23446778988776665555555554332 23444 336
Q ss_pred ecCchhHHHhhCC--CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhh
Q 043779 298 TTRLAKVASIVGT--LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLM 368 (581)
Q Consensus 298 Ttr~~~v~~~~~~--~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L 368 (581)
|||.-.+.+.+.. .-+.+++--+.+|-.++..+.+..-+.+..+ +.+.+|+++..|-|--..-+-+..
T Consensus 158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~---~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDE---EAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCCh---HHHHHHHHhccCCcHHHHHHHHHH
Confidence 8886555444322 1267888899999999999887544332222 668999999999998665444443
No 38
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=2.7e-07 Score=93.80 Aligned_cols=195 Identities=13% Similarity=0.082 Sum_probs=116.5
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCc------------------eeE
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF------------------RIW 218 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~------------------~~w 218 (581)
.+++|.+...+.+.+.+.... -...+.++|+.|+||+|+|..+.+..--...... .-+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 568999999999999887642 3346789999999999999887763211110000 001
Q ss_pred EEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHh-----cCcceEEEEecccccchhhHHHHhhhcCCCCCCc
Q 043779 219 VFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDML-----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGS 293 (581)
Q Consensus 219 v~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 293 (581)
+..+..+|...+.... ..-++.....-..+++.+ +.+.+ .+.+.++|+||++..+....+.|...+.....++
T Consensus 95 i~~~~HPDl~~i~~~~-~~~~~~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 95 IAAGAHGGLLTLERSW-NEKGKRLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHccCCCCeEEEeccc-ccccccccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 1111111111000000 000000001123344333 33332 2567799999999888888888888888666667
Q ss_pred EEEEecCchh-HHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 294 SVVVTTRLAK-VASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 294 ~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
.+|++|.+.+ +... ......+.+.+++.++..+++....... .. .....++..++|.|+.+..+
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~----~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL----PD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC----CH---HHHHHHHHHcCCCHHHHHHH
Confidence 6777666543 3322 2334589999999999999998764211 11 22367899999999876554
No 39
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=5.7e-07 Score=93.01 Aligned_cols=196 Identities=14% Similarity=0.056 Sum_probs=115.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+..+..|..++.... -...+.++|++|+||||+|+.+++...-. .... ...+....+-..+...+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGISS 90 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCCc
Confidence 468999999999999887542 22357899999999999999998732111 1000 0011111111111111000
Q ss_pred h---hCC-CCCCcCCHHHHHHHHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEe-cCchhHHHh-hC
Q 043779 237 S---SGG-NVSEAWNLDLLQRRLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVT-TRLAKVASI-VG 309 (581)
Q Consensus 237 ~---l~~-~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT-tr~~~v~~~-~~ 309 (581)
. +.. ......+..++.+.+... ..++.-++|+|+++..+...++.+...+........+|++ |....+... ..
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 0 000 000111122222222221 2356679999999988888899988888755555555544 444444332 23
Q ss_pred CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 310 TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 310 ~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
....|.+.+++.++..+.+.+.+...+.... .+....|++.++|.+.-+.
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHHH
Confidence 3457999999999999988887654332222 2668899999999985543
No 40
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.66 E-value=2.6e-07 Score=81.56 Aligned_cols=125 Identities=19% Similarity=0.086 Sum_probs=71.3
Q ss_pred ccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhC
Q 043779 160 YGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSG 239 (581)
Q Consensus 160 vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~ 239 (581)
+|++..++.+...+... ..+.+.|+|++|+|||++++.+++... ..-...+++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~-----~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP-----PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh--
Confidence 47888888898888642 345788999999999999999998432 222334555554433322111111000
Q ss_pred CCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCC------CCCcEEEEecCchh
Q 043779 240 GNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCG------SKGSSVVVTTRLAK 303 (581)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 303 (581)
............++.++|+||++.........+...+... ..+..+|+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222356789999999754222333333333322 36778888888543
No 41
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=5.7e-07 Score=96.91 Aligned_cols=192 Identities=16% Similarity=0.134 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.++||-+..++.|...+.... -...+.++|+.|+||||+|+.+.+...-...+.. -.++.+ .....|..
T Consensus 16 ~divGQe~vv~~L~~~l~~~r----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~i~~ 84 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCREIEQ 84 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHHHHc
Confidence 468999999999998887531 2345679999999999999999874211110000 001111 11111111
Q ss_pred h-------hCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC-chhH
Q 043779 237 S-------SGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR-LAKV 304 (581)
Q Consensus 237 ~-------l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v 304 (581)
. +... .....+++.+.+... ..+++-++|+|+++..+....+.|...+.......++|++|. ...+
T Consensus 85 g~~~D~ieidaa--s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 85 GRFVDLIEIDAA--SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred CCCCCceeeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 0 0000 011233333322221 235677999999998888888888888876666666555554 4444
Q ss_pred HHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 305 ASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 305 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
... ......|++.+++.++....+.+.+........ ......|++.++|.|--+..+
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 322 333468999999999999998876532222111 255778999999988755433
No 42
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=1.2e-06 Score=92.45 Aligned_cols=193 Identities=18% Similarity=0.212 Sum_probs=116.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCc-eeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF-RIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~l~~~il 235 (581)
.+++|-+..+..|...+... .-...+.++|++|+||||+|+.+++.......... ..+..+..+.+ ...+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i~ 92 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISFN 92 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHHh
Confidence 46789999999888877653 23356789999999999999999874221111000 00001111100 00110
Q ss_pred H-------hhCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEE-ecCchh
Q 043779 236 T-------SSGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVV-TTRLAK 303 (581)
Q Consensus 236 ~-------~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~ 303 (581)
. .+.. ......+++...+... ..+++-++|+|+++......++.+...+......+.+|+ ||+...
T Consensus 93 ~~~h~Dv~eida--as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 93 NHNHPDIIEIDA--ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred cCCCCcEEEeec--cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 0 0000 0111233333333221 235677999999998888889999888886666666654 555445
Q ss_pred HHHhh-CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 304 VASIV-GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 304 v~~~~-~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
+...+ .....+++.+++.++...++.+.+...+.... .+....|++.++|.+.-+.
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDAV 227 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 54433 33457999999999999999988754332222 2567789999999875553
No 43
>PRK08727 hypothetical protein; Validated
Probab=98.65 E-value=7.5e-07 Score=85.33 Aligned_cols=149 Identities=16% Similarity=0.083 Sum_probs=90.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
..+.|+|++|+|||+|++.+++. .......+.|++..+ ....+ ...+.. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~-----------------~~~~~~-l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRL-----------------RDALEA-L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhH-----------------HHHHHH-H-hcC
Confidence 45889999999999999999884 233333455665322 11111 111111 1 234
Q ss_pred eEEEEecccccc-hhhHHH-HhhhcCC-CCCCcEEEEecCch---------hHHHhhCCCCeeeCCCCChHhHHHHHHhh
Q 043779 264 YLLVLDDVWNED-QEKWDQ-LKCTLTC-GSKGSSVVVTTRLA---------KVASIVGTLPVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 264 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 331 (581)
-+||+||+.... ...|.. +...+.. ...|..||+||+.. .+.+.+.....+++++++.++-..++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 599999996432 122332 2222221 12456799999832 23333444568999999999999999987
Q ss_pred hcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 332 AFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 332 a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
+.......++ ++...|++.++|..-.+.
T Consensus 175 a~~~~l~l~~---e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 175 AQRRGLALDE---AAIDWLLTHGERELAGLV 202 (233)
T ss_pred HHHcCCCCCH---HHHHHHHHhCCCCHHHHH
Confidence 7543222222 678888999987766653
No 44
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=8.8e-07 Score=89.54 Aligned_cols=196 Identities=15% Similarity=0.145 Sum_probs=117.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC--CcCceeEEEecCCCcHhHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR--HFEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~wv~v~~~~~~~~l~~~i 234 (581)
+.++|-++..+.+...+... .....+.|+|+.|+||||+|..+.+..--.. .+... ....+...-...+.+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 56899999999999998754 2344678999999999999998887421110 01111 000011111122222
Q ss_pred HHh-------hCCC-------CCCcCCHHHHHHHHHHHh-----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEE
Q 043779 235 ITS-------SGGN-------VSEAWNLDLLQRRLKDML-----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSV 295 (581)
Q Consensus 235 l~~-------l~~~-------~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 295 (581)
... +... .......+++. .+.+++ .+++-++|+|+++..+....+.+...+........+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 211 1000 01112244443 333333 256779999999988888888888888755455554
Q ss_pred -EEecCchhHHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhh
Q 043779 296 -VVTTRLAKVASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLG 365 (581)
Q Consensus 296 -ivTtr~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~ 365 (581)
++|++...+... .+....+++.+++.++...++.+...... .+ .+.+..|++.++|.|.....+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 444443333222 23345899999999999999988432211 11 2457789999999998765443
No 45
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.64 E-value=1.8e-06 Score=88.78 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc--CCcC-cee-----EEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK--RHFE-FRI-----WVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~-~~~-----wv~v~~~~~~~ 228 (581)
.+++|.+..++.+..++... .-...+.++|++|+||||+|+.+.....-. ..+. +.. ++..+..++..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 46799999999999988653 233567799999999999998887632111 0110 000 00000000000
Q ss_pred HHHHHHHHhhCCCCCCcCCHH---HHHHHHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh-
Q 043779 229 RLMTDIITSSGGNVSEAWNLD---LLQRRLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK- 303 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~---~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~- 303 (581)
.+ .+ ......+ ++...+... ..+++-++|+|++........+.+...+......+.+|++|.+..
T Consensus 90 ~~--------~~--~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~ 159 (355)
T TIGR02397 90 EI--------DA--ASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHK 159 (355)
T ss_pred Ee--------ec--cccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHH
Confidence 00 00 0001111 122221111 124556899999976666667778777765556677767765443
Q ss_pred HHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 304 VASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 304 v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
+... ......+++.+++.++...++...+-..+...+ .+.+..|++.++|.|..+...
T Consensus 160 l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 160 IPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred HHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHH
Confidence 2222 233457899999999999998876643332222 267888999999999766543
No 46
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.64 E-value=4.2e-07 Score=87.97 Aligned_cols=157 Identities=19% Similarity=0.233 Sum_probs=98.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
.+..+.+||++|+||||||+.+.+..+... ..+|..|....-..-.+.|+++... ...+.+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhhc
Confidence 567777999999999999999998533322 4466666554433334444433211 112457
Q ss_pred cceEEEEecccccchhhHHHHhhhcCCCCCCcEEEE--ecCchhH---HHhhCCCCeeeCCCCChHhHHHHHHhhhc--C
Q 043779 262 KRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVV--TTRLAKV---ASIVGTLPVYRLSDLSEDDCWLLFKQRAF--G 334 (581)
Q Consensus 262 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~~~~~~~l~~L~~~e~~~lf~~~a~--~ 334 (581)
+|.+|++|.|+..+..+-+. .||.-.+|.-++| ||.++.. +..+....++.|++|..++...++.+..- +
T Consensus 222 rkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 89999999997655444333 3455556766665 5665543 23345567999999999999998887322 1
Q ss_pred CCC----C-CCc---hHHHHHHHHHHHcCCCchH
Q 043779 335 NDT----E-PPM---NILAIAKEIVKKCKGVPLA 360 (581)
Q Consensus 335 ~~~----~-~~~---~l~~~~~~I~~~~~G~PLa 360 (581)
... . +++ --..+..-++..|+|-..+
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 111 1 111 1235677788888887543
No 47
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.64 E-value=3.5e-07 Score=100.53 Aligned_cols=169 Identities=24% Similarity=0.334 Sum_probs=99.1
Q ss_pred CccccchhhHH---HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC-cHhHHHH
Q 043779 157 PEVYGREEDKE---KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF-NVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~---~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~ 232 (581)
++|+|.+..+. .+...+... ....+.++|++|+||||||+.+++. ....| +.+.... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~-----~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD-----RVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLAGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhhhhH----
Confidence 46889888774 455665532 4556789999999999999999973 33333 1111100 000
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHHHh--cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEe--cCchh--HHH
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKDML--DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVT--TRLAK--VAS 306 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~ 306 (581)
+..+........+ .+++.+|||||++..+...++.+...+. .|+.++|+ |.+.. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 0111111121111 2467799999998777666777766554 34455553 33321 222
Q ss_pred h-hCCCCeeeCCCCChHhHHHHHHhhhc-------CCCCCCCchHHHHHHHHHHHcCCCchHH
Q 043779 307 I-VGTLPVYRLSDLSEDDCWLLFKQRAF-------GNDTEPPMNILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 307 ~-~~~~~~~~l~~L~~~e~~~lf~~~a~-------~~~~~~~~~l~~~~~~I~~~~~G~PLai 361 (581)
. ......+.+++|+.++...++.+.+. ......+ .+....|++.+.|..-.+
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDARSL 214 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHHHH
Confidence 1 22345799999999999999987653 1111111 256677888888764433
No 48
>PF13173 AAA_14: AAA domain
Probab=98.63 E-value=1.9e-07 Score=80.56 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=75.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
+++.|.|+.|+|||||+++++.+.. .....++++..+........ .+ +.+.+.+...+++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 5889999999999999999997432 23345666654432211000 00 2222333333477
Q ss_pred eEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHHhh------CCCCeeeCCCCChHhH
Q 043779 264 YLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASIV------GTLPVYRLSDLSEDDC 324 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~------~~~~~~~l~~L~~~e~ 324 (581)
.+++||++... ..|......+.+..+..+|++|+........- +....+++.||+..|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999654 46777666666555678999999866555331 2223689999998764
No 49
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.2e-06 Score=94.26 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc--CceeEEEecCCCcHhHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF--EFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~l~~~i 234 (581)
+++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+.+..--.+.. .....-.++.+ .....|
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~i 87 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRDI 87 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHHH
Confidence 468998888899999887542 33566899999999999999986531110000 00000001111 111111
Q ss_pred HHhh-----CCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-CchhH
Q 043779 235 ITSS-----GGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLAKV 304 (581)
Q Consensus 235 l~~l-----~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 304 (581)
...- ..........+++.+.+... ..++.-++|||+++..+...++.+...+......+++|++| ....+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0000 00000112233333333221 12445689999999888888888888887666666666555 43343
Q ss_pred HH-hhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 305 AS-IVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 305 ~~-~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
.. .......+++.+++.++....+.+.+...+...+ .+....|++.++|.+.-+..+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 32 2344568999999999999999877644332222 256788999999987655443
No 50
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.62 E-value=2.1e-06 Score=79.51 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=66.7
Q ss_pred CcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHHhh-CCCCeeeCCCCChHhHHHHHHhhhcCCCCC
Q 043779 261 GKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVASIV-GTLPVYRLSDLSEDDCWLLFKQRAFGNDTE 338 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~ 338 (581)
+.+-++|+||+........+.+...+....+.+.+|++|++. .+...+ .....+++.+++.++..+++.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 456789999998777777888888887666667777776643 232222 23358999999999999999887 1 1
Q ss_pred CCchHHHHHHHHHHHcCCCchH
Q 043779 339 PPMNILAIAKEIVKKCKGVPLA 360 (581)
Q Consensus 339 ~~~~l~~~~~~I~~~~~G~PLa 360 (581)
. .+.+..|++.++|.|..
T Consensus 170 -~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -C---HHHHHHHHHHcCCCccc
Confidence 1 26688999999999863
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.2e-06 Score=91.97 Aligned_cols=195 Identities=22% Similarity=0.240 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+.....|...+... .-...+.++|++|+||||+|+.+++.......-. + .+...-.....+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~---~----~pc~~c~~c~~i~~ 82 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKG---V----EPCNECRACRSIDE 82 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CCCcccHHHHHHhc
Confidence 46899988888888877653 1234578999999999999999987421110000 0 00000000000000
Q ss_pred -------hhCCCCCCcCCHHHHHHHHHHH-----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hh
Q 043779 237 -------SSGGNVSEAWNLDLLQRRLKDM-----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AK 303 (581)
Q Consensus 237 -------~l~~~~~~~~~~~~l~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 303 (581)
.+... .....+++. .+.+. ..+++-++|+|+++.......+.+...+........+|++|.+ ..
T Consensus 83 g~~~dv~el~aa--~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~k 159 (472)
T PRK14962 83 GTFMDVIELDAA--SNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEK 159 (472)
T ss_pred CCCCccEEEeCc--ccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHh
Confidence 00000 011122222 12221 1245679999999766666667777777654445555544433 34
Q ss_pred HHHhh-CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC-chHHHHhhhhh
Q 043779 304 VASIV-GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV-PLAAKTLGSLM 368 (581)
Q Consensus 304 v~~~~-~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~-PLai~~~~~~L 368 (581)
+...+ .....+++.+++.++....+.+.+...+...+ .++...|++.++|. +.++..+-.+.
T Consensus 160 l~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 160 VPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred hhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 43332 33458999999999999998887643322222 25678889888655 66777665543
No 52
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.2e-06 Score=92.96 Aligned_cols=193 Identities=14% Similarity=0.107 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.++||-+..++.|..++.... -...+.++|++|+||||+|+.+.+..--...+.. -.++.+ .....|..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~C----~~C~~i~~ 84 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA---NPCNDC----ENCREIDE 84 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc---ccCCCC----HHHHHHhc
Confidence 468999999999999997542 2345679999999999999998873211111100 000000 00001100
Q ss_pred hhC-----CCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hhHHH
Q 043779 237 SSG-----GNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AKVAS 306 (581)
Q Consensus 237 ~l~-----~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~ 306 (581)
.-. .........+++.+.+... ..++.-++|+|+++..+....+.+...+......+++|++|.+ ..+..
T Consensus 85 g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~ 164 (509)
T PRK14958 85 GRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPV 164 (509)
T ss_pred CCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchH
Confidence 000 0000111233333322211 1245668999999888878888888888766666766665543 33332
Q ss_pred h-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 307 I-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 307 ~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
. ......+++.+++.++....+...+-..+.... .+....|++.++|.+.-+..
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 165 TVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALS 219 (509)
T ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHH
Confidence 2 233457899999999988877666543322222 25577899999998865543
No 53
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=9.5e-07 Score=94.85 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=114.2
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHH-HH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTD-II 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~-il 235 (581)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+........ -+..+..+..-..+... ..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C~sCr~i~~g~~~ 88 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVCQSCTQIDAGRYV 88 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCcccHHHHHHhccCcc
Confidence 46899999999999998753 233567899999999999999988732111110 00001100000000000 00
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHHh-hC
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVASI-VG 309 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~ 309 (581)
.-+..........+.+.+.+... ..+++-++|+|++...+....+.|...+......+++|++|.+. .+... .+
T Consensus 89 DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS 168 (709)
T PRK08691 89 DLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 (709)
T ss_pred ceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH
Confidence 00000000111223333333211 12566799999998777667777877776555566677666533 22221 23
Q ss_pred CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 310 TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 310 ~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
....+.+.+++.++....+.+.+...+.... .+.+..|++.++|.+.-+..
T Consensus 169 RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHH
Confidence 3347889999999999999877654333222 25688999999999865543
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.5e-06 Score=90.84 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=113.8
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc-------------------CCcCcee
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK-------------------RHFEFRI 217 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~~ 217 (581)
.+++|.+..++.|.+.+... .-...+.++|++|+||||+|+.+.....-. +.+..++
T Consensus 13 ~dliGQe~vv~~L~~a~~~~----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 46899999888888888653 123467899999999999999887521000 0011111
Q ss_pred EEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCc
Q 043779 218 WVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGS 293 (581)
Q Consensus 218 wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 293 (581)
.++.+... ..+++...+... ..++.-++|+|+++..+....+.+...+....+.+
T Consensus 89 eidaas~~---------------------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 89 EIDAASNT---------------------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred EEecccCC---------------------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 22221111 222222222111 12456689999998777777888888888766777
Q ss_pred EEEEecC-chhHHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 294 SVVVTTR-LAKVASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 294 ~iivTtr-~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
.+|++|. ...+... ......+++.+++.++....+.+.+...+...++ +.+..|++.++|.+..+.
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~---eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDE---ESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 7666654 3444333 2344689999999999999998877544332222 567889999999886443
No 55
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.9e-06 Score=88.31 Aligned_cols=191 Identities=13% Similarity=0.045 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhcCcCC-----CCCeEEEEEEecCCCcHHHHHHHHhcCccccCC--cCc-----eeEEEecCC
Q 043779 157 PEVYGREEDKEKIVERLVKDVAG-----SDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRH--FEF-----RIWVFVFED 224 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~-----~~wv~v~~~ 224 (581)
.+++|-+..++.|.+++...... ..-...+.++|++|+|||++|+.+.....-... -.| +-++.-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35789999999999999764210 012456779999999999999998762111000 000 000000011
Q ss_pred CcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC
Q 043779 225 FNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR 300 (581)
Q Consensus 225 ~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 300 (581)
+++.-+ .........+++...+... ..+++-++|+|++...+....+.+...+....++..+|++|.
T Consensus 85 pD~~~i---------~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 85 PDVRVV---------APEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred CCEEEe---------ccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 111000 0000111233333222211 124556888899988877777778887776666676666665
Q ss_pred c-hhHHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 301 L-AKVASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 301 ~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
+ ..+... .+....+.+.+++.++..+++..... .+ .+.+..++..++|.|.....+
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4 344333 23346899999999999998875431 11 145778999999999765433
No 56
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=1.5e-06 Score=92.31 Aligned_cols=196 Identities=16% Similarity=0.169 Sum_probs=114.0
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+..++.+..++.... -...+.++|++|+||||+|+.+.+...-.. |.... ..+.-...+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINT 84 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHc
Confidence 468999999999999886532 335677999999999999999987321111 11100 0011111111111
Q ss_pred hhCCC-----CCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-CchhHHH
Q 043779 237 SSGGN-----VSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLAKVAS 306 (581)
Q Consensus 237 ~l~~~-----~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~ 306 (581)
..... .......+++...+... ..+++-++|+|+++..+...++.|...+......+.+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 10000 00011223332222111 11334479999998777777888888887655566665555 4334432
Q ss_pred h-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCch-HHHHhhh
Q 043779 307 I-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPL-AAKTLGS 366 (581)
Q Consensus 307 ~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PL-ai~~~~~ 366 (581)
. ......+++.+++.++....+...+...+...++ +.+..+++.++|.+. |+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~---eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIED---NAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 3334589999999999998888766433221222 567889999999765 4444444
No 57
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.58 E-value=1e-06 Score=84.30 Aligned_cols=153 Identities=17% Similarity=0.114 Sum_probs=89.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
....+.|+|++|+|||+||+.+++... ...+ ...+++...... . + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~~------~----~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPLL------A----F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhHH------H----H------------------hhc-c
Confidence 345678999999999999999988421 1121 233444322110 0 0 011 2
Q ss_pred cceEEEEecccccchhhHHHHhhhcCCC-CCCc-EEEEecCchhH--------HHhhCCCCeeeCCCCChHhHHHHHHhh
Q 043779 262 KRYLLVLDDVWNEDQEKWDQLKCTLTCG-SKGS-SVVVTTRLAKV--------ASIVGTLPVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 262 k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 331 (581)
..-+||+||+...+...-..+...+... ..+. .+|+|++.... .+.+.....+++.+++.++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3447899999654433333444444321 1333 46677664321 112333358899999998877777765
Q ss_pred hcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhh
Q 043779 332 AFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLM 368 (581)
Q Consensus 332 a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L 368 (581)
+.......++ ++...+++.+.|++..+..+...+
T Consensus 170 ~~~~~v~l~~---~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQLAD---EVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCCCCH---HHHHHHHHhccCCHHHHHHHHHHH
Confidence 4322222222 678888999999999987666654
No 58
>PRK09087 hypothetical protein; Validated
Probab=98.58 E-value=1.3e-06 Score=83.03 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=89.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGK 262 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 262 (581)
.+.+.|+|++|+|||+|++.++.... ..+++.. .+...++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hhc-
Confidence 35688999999999999999886321 1133221 111111111 111
Q ss_pred ceEEEEeccccc--chhhHHHHhhhcCCCCCCcEEEEecCc---------hhHHHhhCCCCeeeCCCCChHhHHHHHHhh
Q 043779 263 RYLLVLDDVWNE--DQEKWDQLKCTLTCGSKGSSVVVTTRL---------AKVASIVGTLPVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 263 ~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 331 (581)
-+|++||+... ++..+-.+...+. ..|..+|+|++. +...+.+....++++++++.++-.+++.++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999542 2222323332222 235679998873 344555566679999999999999999988
Q ss_pred hcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhh
Q 043779 332 AFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGS 366 (581)
Q Consensus 332 a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~ 366 (581)
+.......++ ++..-|++++.|..-++..+..
T Consensus 166 ~~~~~~~l~~---ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 166 FADRQLYVDP---HVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHcCCCCCH---HHHHHHHHHhhhhHHHHHHHHH
Confidence 8543332332 7788899999988877764333
No 59
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.57 E-value=1.8e-06 Score=82.75 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=93.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGK 262 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 262 (581)
.+.+.|+|++|+|||+|++.+++.. ...-..+.++++..... ...+..+.+. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~-----~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW--------------------FVPEVLEGME-----Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh--------------------hhHHHHHHhh-----h
Confidence 3578899999999999999998842 22223344555532100 0011111111 1
Q ss_pred ceEEEEecccccc-hhhHHH-HhhhcCCC-CCC-cEEEEecCch---------hHHHhhCCCCeeeCCCCChHhHHHHHH
Q 043779 263 RYLLVLDDVWNED-QEKWDQ-LKCTLTCG-SKG-SSVVVTTRLA---------KVASIVGTLPVYRLSDLSEDDCWLLFK 329 (581)
Q Consensus 263 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~ 329 (581)
--+|++||+.... ...|+. +...+... ..| .++|+||+.. .+.+.+....++++.+++.++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2489999996432 133433 22222211 123 4789998743 344455556789999999999999998
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhh
Q 043779 330 QRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLM 368 (581)
Q Consensus 330 ~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L 368 (581)
+++.......++ ++..-|++.+.|..-.+..+-..+
T Consensus 178 ~~a~~~~~~l~~---~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRGFELPE---DVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcCCCCCH---HHHHHHHHhhcCCHHHHHHHHHHH
Confidence 866433222222 778899999998877665444433
No 60
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2e-06 Score=89.23 Aligned_cols=199 Identities=15% Similarity=0.146 Sum_probs=114.0
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEE-ecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVF-VFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~l~~~il 235 (581)
.+++|.+..++.|..++... .-...+.++|++|+||||+|..+.+...-...+....|.. ...+.+.=.....+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred hhccChHHHHHHHHHHHHhC----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 46889999889898888753 1234577999999999999999887322111111000110 000000001111111
Q ss_pred HhhCCC-----CCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-CchhHH
Q 043779 236 TSSGGN-----VSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLAKVA 305 (581)
Q Consensus 236 ~~l~~~-----~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 305 (581)
...... .......+++.+..... ..+++-++|+|+++......++.+...+....+.+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 100000 00111234443322222 12455688999998777778888888887666677766555 434443
Q ss_pred Hhh-CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 306 SIV-GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 306 ~~~-~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
..+ .....+++.+++.++....+...+-......+ .+.+..|++.++|.+--+.
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 322 12247899999999998888876643222122 2678899999999886444
No 61
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.2e-06 Score=91.66 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|-+..++.+..++.... -...+.++|++|+||||+|+.+.+......... .-.++.+ .....+..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pcg~C----~~C~~i~~ 84 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---ATPCGVC----SACLEIDS 84 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---CCCCCCC----HHHHHHhc
Confidence 468999999999999987532 234567999999999999999976321110000 0000000 00000000
Q ss_pred h-----hCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hhHHH
Q 043779 237 S-----SGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AKVAS 306 (581)
Q Consensus 237 ~-----l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~ 306 (581)
. +..........+++...+... ..+++-++|+|+++.......+.+...+......+.+|++|.+ ..+..
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~ 164 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV 164 (527)
T ss_pred CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCch
Confidence 0 000000011223333222211 1256679999999887777788888888766566666655543 33321
Q ss_pred h-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCch-HHHHh
Q 043779 307 I-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPL-AAKTL 364 (581)
Q Consensus 307 ~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PL-ai~~~ 364 (581)
. ......+++.+++.++....+.+.+...+.... .+.+..|++.++|.+. |+..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 165 TVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1 122347899999999999888776543222111 2557889999999876 33443
No 62
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=3.6e-06 Score=90.74 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=117.2
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCc--eeEEEecCCCcHhHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF--RIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~wv~v~~~~~~~~l~~~i 234 (581)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.......... ..+-.+..+ .-...|
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i 95 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAI 95 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHH
Confidence 468999999999999987542 3346779999999999999999874221111000 000001100 011111
Q ss_pred HHhhCC-----CCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-CchhH
Q 043779 235 ITSSGG-----NVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLAKV 304 (581)
Q Consensus 235 l~~l~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 304 (581)
...... ........+++.+.+... ..+++-++|+|+++..+....+.|...+......+.+|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 111100 000112233433322211 12455689999998877777888888887666667766555 43343
Q ss_pred HHhh-CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 305 ASIV-GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 305 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
...+ .....+++.+++.++....+.+.+........+ +.+..|++.++|.+.-+..
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~---eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVED---EALALIARAAEGSVRDGLS 232 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 3222 334589999999999999998876443322222 6678899999999876653
No 63
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=6.3e-06 Score=84.98 Aligned_cols=179 Identities=15% Similarity=0.197 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc------CCcCceeEEEecCCCcHhHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK------RHFEFRIWVFVFEDFNVRRL 230 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~F~~~~wv~v~~~~~~~~l 230 (581)
.+++|.+...+.+.+++... .-...+.++|++|+||||+|+.+.+..... ..|...+. ....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~-~l~~------- 84 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF-ELDA------- 84 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE-Eecc-------
Confidence 46789999999999998753 234578899999999999999997732110 11211110 1100
Q ss_pred HHHHHHhhCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-CchhHH
Q 043779 231 MTDIITSSGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLAKVA 305 (581)
Q Consensus 231 ~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 305 (581)
......+++...+... ..+++-++++|++.......++.+...+......+.+|++| ....+.
T Consensus 85 ------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 85 ------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred ------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 0011122222222211 12345689999997666666777777666544455555555 333332
Q ss_pred Hh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 306 SI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
.. ......+++.+++.++...++...+...+...++ +.+..|+..++|.+-.+.
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~---~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFED---DALHIIAQKADGALRDAL 207 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhCCCCHHHHH
Confidence 22 2334578999999999999888766543322222 678889999999766443
No 64
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=6.2e-06 Score=88.25 Aligned_cols=197 Identities=18% Similarity=0.184 Sum_probs=115.9
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|-+..++.|.+++... .-...+.++|++|+||||+|+.+.+...-....... .+... .....|..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~---pCg~C----~sC~~i~~ 84 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE---PCNTC----EQCRKVTQ 84 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC---CCccc----HHHHHHhc
Confidence 46789888888888888653 124567799999999999999998743211100000 00000 01111111
Q ss_pred hhCCC-----CCCcCCHHHHHHHHHHH-----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hhHH
Q 043779 237 SSGGN-----VSEAWNLDLLQRRLKDM-----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AKVA 305 (581)
Q Consensus 237 ~l~~~-----~~~~~~~~~l~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 305 (581)
..... .......+++.. +.+. ..+++-++|+|+++.......+.|...+........+|++|.. ..+.
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 00000 000111222222 2221 2356679999999887777788888888655455666665543 4443
Q ss_pred Hh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc-hHHHHhhhhh
Q 043779 306 SI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP-LAAKTLGSLM 368 (581)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P-Lai~~~~~~L 368 (581)
.. ......+++.+++.++....+...+.......++ +.+..|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~---eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDP---AAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32 2334578999999999999888766443322222 66888999999965 6777766554
No 65
>PF14516 AAA_35: AAA-like domain
Probab=98.46 E-value=1.8e-05 Score=79.90 Aligned_cols=201 Identities=10% Similarity=0.062 Sum_probs=117.1
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC-----CcHhHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED-----FNVRRL 230 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~l 230 (581)
.+..|+|...-+++.+.+... -..+.|.|+-.+|||+|...+.+..+.. .+ ..+++++..- .+....
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHH
Confidence 345678886777777777642 2478899999999999999998744332 33 3446766542 234445
Q ss_pred HHHHHH----hhCCCCC-------CcCCHHHHHHHHHHHh---cCcceEEEEecccccch------hhHHHHhhhcCCCC
Q 043779 231 MTDIIT----SSGGNVS-------EAWNLDLLQRRLKDML---DGKRYLLVLDDVWNEDQ------EKWDQLKCTLTCGS 290 (581)
Q Consensus 231 ~~~il~----~l~~~~~-------~~~~~~~l~~~l~~~l---~~k~~LlVlDdv~~~~~------~~~~~l~~~l~~~~ 290 (581)
++.++. +++.... ...........+.+++ .+++.+|+||++...-. +-+..++.......
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 555544 4432211 0112223333344432 26899999999954211 12222332222111
Q ss_pred ----CCc-EE-EEecCchhHHHh-----hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCch
Q 043779 291 ----KGS-SV-VVTTRLAKVASI-----VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPL 359 (581)
Q Consensus 291 ----~gs-~i-ivTtr~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PL 359 (581)
... ++ ++.+........ ++....++|++++.+|...|...+-... .+ ...++|...++|+|.
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~~---~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----SQ---EQLEQLMDWTGGHPY 234 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----CH---HHHHHHHHHHCCCHH
Confidence 111 12 222211111111 1222378999999999999998764321 11 338899999999999
Q ss_pred HHHHhhhhhccC
Q 043779 360 AAKTLGSLMHFK 371 (581)
Q Consensus 360 ai~~~~~~L~~~ 371 (581)
.+..++..+..+
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999999664
No 66
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=7.2e-06 Score=88.00 Aligned_cols=197 Identities=14% Similarity=0.070 Sum_probs=116.0
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+...-..... +-.++.+.+ ...|..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~~----C~~i~~ 81 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCES----CVALAP 81 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccHH----HHHhhc
Confidence 46899999999999998753 1234567999999999999999987321111000 001111100 111100
Q ss_pred h---------hCCC-CCCcCCHHHHHHHHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-CchhH
Q 043779 237 S---------SGGN-VSEAWNLDLLQRRLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLAKV 304 (581)
Q Consensus 237 ~---------l~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 304 (581)
. +... .....+..++...+... ..+++-++|+|+++.......+.|...+......+.+|++| ....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0 0000 00111122222222211 12456689999998888888888888888666666655544 44444
Q ss_pred HHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCch-HHHHhhhh
Q 043779 305 ASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPL-AAKTLGSL 367 (581)
Q Consensus 305 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PL-ai~~~~~~ 367 (581)
... .+....+++.+++.++..+++.+.+...+...+ .+.+..|++.++|.+- ++..+-.+
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 433 334568999999999998888876543332222 1567788999999875 44444443
No 67
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.45 E-value=3e-06 Score=80.18 Aligned_cols=187 Identities=15% Similarity=0.192 Sum_probs=101.2
Q ss_pred Cccccchhh-HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREED-KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~-~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il 235 (581)
+-++|...+ .-.....+..... .....+.|+|+.|+|||.|.+++++.......=..++|++ ..++...+.
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~--~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~ 80 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPG--ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFA 80 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTT--TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCC--CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHH
Confidence 334565333 2233344443322 2345678999999999999999998432111111233443 344555555
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccch-hhHHH-HhhhcC-CCCCCcEEEEecCch---------h
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ-EKWDQ-LKCTLT-CGSKGSSVVVTTRLA---------K 303 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~-~~~~~-l~~~l~-~~~~gs~iivTtr~~---------~ 303 (581)
..+.. ....+ ++..++ .-=+|++||++.... ..|.. +...+. ....|.+||+|++.. .
T Consensus 81 ~~~~~-----~~~~~----~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~ 150 (219)
T PF00308_consen 81 DALRD-----GEIEE----FKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD 150 (219)
T ss_dssp HHHHT-----TSHHH----HHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH
T ss_pred HHHHc-----ccchh----hhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh
Confidence 44432 12222 233333 345899999965432 22322 222222 112466899999632 3
Q ss_pred HHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 304 VASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 304 v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
+.+.+....++++.+++.++...++.+++.......++ +++.-|++.+.+..-.+.-+
T Consensus 151 L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~---~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPE---EVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-H---HHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcH---HHHHHHHHhhcCCHHHHHHH
Confidence 34445555689999999999999999988654443332 67788888887776665543
No 68
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=5.3e-06 Score=90.31 Aligned_cols=194 Identities=14% Similarity=0.136 Sum_probs=115.2
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+......... .....+.-.....+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 468999999999988887531 234567999999999999999987321111000 0001111122222222
Q ss_pred hhCCC-----CCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hhHHH
Q 043779 237 SSGGN-----VSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AKVAS 306 (581)
Q Consensus 237 ~l~~~-----~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~ 306 (581)
..... .......+++...+... ..+++-++|+|+++.......+.|...+......+.+|++|.. ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 11110 00112233332222111 1245668999999877767778888777765566666666543 33332
Q ss_pred h-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 307 I-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 307 ~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
. ......+++.+++.++....+...+...+...++ +.+..|++.++|.+..+..
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~---eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEP---GALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 2 2334578899999999998888776543322222 6688999999999875543
No 69
>PRK05642 DNA replication initiation factor; Validated
Probab=98.42 E-value=7e-06 Score=78.65 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=92.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
..+.|+|.+|+|||.|++.+++.. ...-..++|++.. ++... ... +.+.+.+-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~------~~~~~--------------~~~----~~~~~~~~- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLA------ELLDR--------------GPE----LLDNLEQY- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHH------HHHhh--------------hHH----HHHhhhhC-
Confidence 567899999999999999998732 2222335565542 11110 011 22222222
Q ss_pred eEEEEecccccc-hhhHHH-HhhhcCC-CCCCcEEEEecCchh---------HHHhhCCCCeeeCCCCChHhHHHHHHhh
Q 043779 264 YLLVLDDVWNED-QEKWDQ-LKCTLTC-GSKGSSVVVTTRLAK---------VASIVGTLPVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 264 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 331 (581)
=+||+||+.... ...|.. +...+.. ...|..+|+|++... +.+.+....++++.+++.++-..++..+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 278899995331 123433 3333321 224567899887432 2233344457899999999999999966
Q ss_pred hcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhh
Q 043779 332 AFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLM 368 (581)
Q Consensus 332 a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L 368 (581)
+.......+ +++..-|++++.|..-.+..+-..|
T Consensus 179 a~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRGLHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 644322222 2778899999998877766544443
No 70
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=8.3e-06 Score=91.00 Aligned_cols=188 Identities=12% Similarity=0.074 Sum_probs=113.8
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc---Cc-----eeEEEec--CCCc
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF---EF-----RIWVFVF--EDFN 226 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~v~--~~~~ 226 (581)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.... .| +.++..+ ...+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 468999999999999987532 23457799999999999999997742211111 00 0000000 0011
Q ss_pred HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHH----HhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC-c
Q 043779 227 VRRLMTDIITSSGGNVSEAWNLDLLQRRLKD----MLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR-L 301 (581)
Q Consensus 227 ~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~ 301 (581)
+.. +.. ......+++.+.... -..++.-++|||+++......++.|+..+......+.+|++|. .
T Consensus 91 v~e--------ida--as~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 91 VTE--------IDA--ASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred EEE--------ecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 100 000 011123333322111 1234556899999998888888999988887666666665554 3
Q ss_pred hhHHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHH
Q 043779 302 AKVASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 302 ~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai 361 (581)
..+... ......|++.+++.++...++.+.+...+.... .+....|++.++|.+..+
T Consensus 161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 444433 234568999999999999888876533222112 145678999999988544
No 71
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=7.7e-06 Score=85.85 Aligned_cols=169 Identities=11% Similarity=0.017 Sum_probs=100.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGK 262 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 262 (581)
..-+.|+|.+|+|||+|++.+.+.......-..+++++ ..++...+...+.... +.+ ..+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~-~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEI-EQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHH-HHHHHHhc-c
Confidence 34578999999999999999988322111111223333 3455666665553210 111 22333333 3
Q ss_pred ceEEEEecccccc--hhhHHHHhhhcCC-CCCCcEEEEecCch---------hHHHhhCCCCeeeCCCCChHhHHHHHHh
Q 043779 263 RYLLVLDDVWNED--QEKWDQLKCTLTC-GSKGSSVVVTTRLA---------KVASIVGTLPVYRLSDLSEDDCWLLFKQ 330 (581)
Q Consensus 263 ~~LlVlDdv~~~~--~~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~ 330 (581)
.-+||+||+.... ....+.+...+.. ...|..||+|+... .+...+....++.+++++.++..+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 4588999996432 1222333333331 12344788887632 2333344455788999999999999998
Q ss_pred hhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhh
Q 043779 331 RAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGS 366 (581)
Q Consensus 331 ~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~ 366 (581)
++-..... ..--+++..-|++.++|.|-.+.-+..
T Consensus 287 ~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 87532210 011137889999999999988875443
No 72
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.40 E-value=5.7e-07 Score=86.26 Aligned_cols=88 Identities=20% Similarity=0.201 Sum_probs=60.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC--CcHhHHHHHHHHhhCCCCCCcCCH------HHHHHHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED--FNVRRLMTDIITSSGGNVSEAWNL------DLLQRRL 255 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~l~~~il~~l~~~~~~~~~~------~~l~~~l 255 (581)
..++|+|++|+|||||++.++++.... +|+..+|+.+... .++.+++..+...+-....+.... .......
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999975444 8999999997777 788999999833322111111111 1222222
Q ss_pred HHH-hcCcceEEEEeccc
Q 043779 256 KDM-LDGKRYLLVLDDVW 272 (581)
Q Consensus 256 ~~~-l~~k~~LlVlDdv~ 272 (581)
... -.++++++++|++.
T Consensus 96 ~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 96 KRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHCCCCEEEEEECHH
Confidence 222 24799999999994
No 73
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.3e-05 Score=86.74 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=113.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEE-ecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVF-VFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~l~~~il 235 (581)
.+++|-+..++.|..++..+. -...+.++|++|+||||+|+.+.+...-........|.. +....+.-.....+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 468999999999999886531 234577999999999999998876322111111001110 000000001111111
Q ss_pred HhhCCC-----CCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-CchhHH
Q 043779 236 TSSGGN-----VSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLAKVA 305 (581)
Q Consensus 236 ~~l~~~-----~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 305 (581)
..-... .......+++...+... ..+++-++|+|+++.......+.|...+......+.+|++| +...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 000000 00111234444433222 22455688999998877777888888888665666655544 444443
Q ss_pred Hh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHH
Q 043779 306 SI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai 361 (581)
.. ......+++.+++.++....+.+.+.......++ +.+..|++.++|..--+
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~---eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDA---DALQLIARKAQGSMRDA 225 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhCCCHHHH
Confidence 32 3445689999999999988887765432221222 66888999999966543
No 74
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.39 E-value=3.7e-06 Score=86.48 Aligned_cols=179 Identities=18% Similarity=0.191 Sum_probs=101.0
Q ss_pred CCccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNV 227 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 227 (581)
..++.|++..++++.+.+..... +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 45789999999999887753211 1123456889999999999999999983 33332 22211
Q ss_pred hHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc-----------chh---hHHHHhhhcCC--CCC
Q 043779 228 RRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE-----------DQE---KWDQLKCTLTC--GSK 291 (581)
Q Consensus 228 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~ 291 (581)
..+..... +. ....+...+...-...+.+|+|||++.. +.. .+..+...+.. ...
T Consensus 190 ~~l~~~~~----g~-----~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKYI----GE-----GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHhh----hH-----HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 11111110 00 1111122222222346789999998542 111 12223222221 234
Q ss_pred CcEEEEecCchhHHH-hh----CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 292 GSSVVVTTRLAKVAS-IV----GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 292 gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
+..||.||+...... .+ .....+.+...+.++..++|..++.........+ ...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 677888887543221 11 1134788999999999999998875543222222 456777787764
No 75
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.8e-05 Score=83.60 Aligned_cols=191 Identities=16% Similarity=0.157 Sum_probs=109.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc--cCC-cCceeEEEecCCCcHhHHHH-
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI--KRH-FEFRIWVFVFEDFNVRRLMT- 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~-F~~~~wv~v~~~~~~~~l~~- 232 (581)
.+++|.+.....+..++.... -.....++|++|+||||+|+.+.....- ... .++. .+.+-..+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~------~c~nc~~i~~g 85 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG------KCENCVEIDKG 85 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC------ccHHHHHHhcC
Confidence 468899999999999997532 2345678999999999999998763210 000 0110 0000000000
Q ss_pred ---HHHHhhCCCCCCcCCHH---HHHHHHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-CchhH
Q 043779 233 ---DIITSSGGNVSEAWNLD---LLQRRLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLAKV 304 (581)
Q Consensus 233 ---~il~~l~~~~~~~~~~~---~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 304 (581)
++. .+... .....+ .+...+... ..+++-++|+|+++.......+.+...+....+...+|++| +...+
T Consensus 86 ~~~d~~-eidaa--s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl 162 (486)
T PRK14953 86 SFPDLI-EIDAA--SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKI 162 (486)
T ss_pred CCCcEE-EEeCc--cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHH
Confidence 000 00000 001122 222222111 12466799999998777667778877777655555555554 43333
Q ss_pred HHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 305 ASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 305 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
... ......+.+.+++.++...++.+.+-..+...++ +.+..|++.++|.+..+..
T Consensus 163 ~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~---~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 163 PPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEE---KALDLLAQASEGGMRDAAS 219 (486)
T ss_pred HHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 322 2334578999999999998888766433222221 5677889999998765543
No 76
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=2e-05 Score=83.42 Aligned_cols=194 Identities=13% Similarity=0.118 Sum_probs=114.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|-+...+.+..++... .-..+..++|++|+||||+|+.+.+..--...-+.. .+... .-...+..
T Consensus 14 deiiGqe~v~~~L~~~I~~g----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~---pC~~C----~~C~~~~~ 82 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST---PCDTC----IQCQSALE 82 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC---CCccc----HHHHHHhh
Confidence 46899999999999988653 233466899999999999999887632100000000 00000 00000000
Q ss_pred hhC-----CCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHH
Q 043779 237 SSG-----GNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVAS 306 (581)
Q Consensus 237 ~l~-----~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~ 306 (581)
... .........+++...+... ..+++-++|+|+++..+....+.|...+....+.+.+|++|.+. .+..
T Consensus 83 ~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred cCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence 000 0000001233343333221 11455689999998888888888888887666667777666543 2222
Q ss_pred -hhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 307 -IVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 307 -~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
.......+++.+++.++....+.+.+...+.... .+.+..|++.++|.+.-+..+
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 1233458999999999999988876643332222 267889999999998655443
No 77
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=7.2e-06 Score=82.44 Aligned_cols=204 Identities=13% Similarity=0.076 Sum_probs=123.8
Q ss_pred cCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH
Q 043779 155 AQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 155 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 234 (581)
++..++||+.|++.+.+|+...-.. ...+.+-|.|.+|.|||.+...++.+..-...=..++++++..-....+++..|
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~-~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL-NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc-ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 4667899999999999999876432 356788899999999999999999864332222345778877666778888888
Q ss_pred HHhhCCCCCCcCCHHHHHHHHHHHhcC--cceEEEEecccccchhhHHHHhhhcCC-CCCCcEEEEecCch--hHH----
Q 043779 235 ITSSGGNVSEAWNLDLLQRRLKDMLDG--KRYLLVLDDVWNEDQEKWDQLKCTLTC-GSKGSSVVVTTRLA--KVA---- 305 (581)
Q Consensus 235 l~~l~~~~~~~~~~~~l~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~--~v~---- 305 (581)
...+...........+..+.+.....+ ..+|+|+|.++.-....-..+...|.+ .-+++++|+.---. +..
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 877722221111224445555555543 368999999843222222223333332 23556655443211 111
Q ss_pred Hhh----C-CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHH
Q 043779 306 SIV----G-TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 306 ~~~----~-~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai 361 (581)
..+ . ....+...|-+.++..++|.++.-.... ...+...+..++++|.|.-=-+
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t--~~~~~~Aie~~ArKvaa~SGDl 365 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST--SIFLNAAIELCARKVAAPSGDL 365 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc--cccchHHHHHHHHHhccCchhH
Confidence 111 1 2347888999999999999998743322 1122234555556655544333
No 78
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.35 E-value=5e-06 Score=79.23 Aligned_cols=189 Identities=17% Similarity=0.165 Sum_probs=118.5
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCcee-EEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRI-WVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-wv~v~~~~~~~~l~~~il 235 (581)
.+++|-+..++-|.+.+.. ...+....+|++|.|||+-|..++...--..-|++++ =.++|..-... +...
T Consensus 36 de~~gQe~vV~~L~~a~~~-----~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~-- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-----RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE-- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-----cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh--
Confidence 4688999888888888875 2567888999999999999988887432334566654 22333332221 0000
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHh--cCcc-eEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hhHHHhh-CC
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDML--DGKR-YLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AKVASIV-GT 310 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~ 310 (581)
...+...+........ ..++ -.||||++.....+.|..++..+...+..++.|+.+.. ..+...+ ..
T Consensus 108 --------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 108 --------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred --------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 0011111111111000 0123 47899999999999999999999887777776655543 2222222 22
Q ss_pred CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 311 LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 311 ~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
..-|+.++|..++...-+...+-..+...+. +..+.|++.++|.-.-...+
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDLRRAITT 230 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcHHHHHHH
Confidence 3468899999999888888777554443332 66889999999875444433
No 79
>CHL00181 cbbX CbbX; Provisional
Probab=98.34 E-value=3.2e-05 Score=76.24 Aligned_cols=134 Identities=15% Similarity=0.068 Sum_probs=75.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcce
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRY 264 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~ 264 (581)
.+.++|++|+||||+|+.+++.....+.-...-|+.++.. .+. ..+.+.. .......+... . .-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~l~----~~~~g~~-----~~~~~~~l~~a-~--gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----DLV----GQYIGHT-----APKTKEVLKKA-M--GG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----HHH----HHHhccc-----hHHHHHHHHHc-c--CC
Confidence 4679999999999999999763211111112225555411 222 2221111 11122223322 2 24
Q ss_pred EEEEeccccc---------chhhHHHHhhhcCCCCCCcEEEEecCchhHHHhhC--------CCCeeeCCCCChHhHHHH
Q 043779 265 LLVLDDVWNE---------DQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASIVG--------TLPVYRLSDLSEDDCWLL 327 (581)
Q Consensus 265 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~--------~~~~~~l~~L~~~e~~~l 327 (581)
+|+||++... .....+.+...+.....+.+||+++....+..... ....+.+++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 9999999642 12333445555555556667777776444322211 123789999999999999
Q ss_pred HHhhhcC
Q 043779 328 FKQRAFG 334 (581)
Q Consensus 328 f~~~a~~ 334 (581)
+...+-.
T Consensus 205 ~~~~l~~ 211 (287)
T CHL00181 205 AKIMLEE 211 (287)
T ss_pred HHHHHHH
Confidence 8887643
No 80
>PRK06620 hypothetical protein; Validated
Probab=98.34 E-value=2.1e-05 Score=74.10 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=82.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
+.+.|+|++|+|||+|++.+++... . .++. .... . + ... ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------------~-~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------------N-E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------------c-h-------hHH-hcC
Confidence 5688999999999999999887321 1 1111 0000 0 0 011 123
Q ss_pred eEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh-------HHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCC
Q 043779 264 YLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK-------VASIVGTLPVYRLSDLSEDDCWLLFKQRAFGND 336 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~ 336 (581)
-++++||++.......-.+...+. ..|..||+|++... ..+.+....++++++++.++-..++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 578899996332222222222222 24568999987332 333344455899999999998888887765322
Q ss_pred CCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 337 TEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 337 ~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
...+ +++..-|++++.|.--.+.-
T Consensus 165 l~l~---~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 165 VTIS---RQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred CCCC---HHHHHHHHHHccCCHHHHHH
Confidence 2222 27788888888887665543
No 81
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.33 E-value=3.2e-05 Score=74.89 Aligned_cols=198 Identities=17% Similarity=0.111 Sum_probs=119.7
Q ss_pred hhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc--C--CcCceeEEEecCCCcHhHHHHHHHHhhC
Q 043779 164 EDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK--R--HFEFRIWVFVFEDFNVRRLMTDIITSSG 239 (581)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~--~F~~~~wv~v~~~~~~~~l~~~il~~l~ 239 (581)
+.++++.++|..+.. ...+.+.|+|.+|.|||++++.+....-.. . .--.++.|..-..++...++..|+..++
T Consensus 44 ~~L~~L~~Ll~~P~~--~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 44 EALDRLEELLEYPKR--HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHHhCCcc--cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 445666666665433 456778899999999999999998641111 0 0113556677788899999999999999
Q ss_pred CCCCCcCCHHHHHHHHHHHhcC-cceEEEEecccccc------hhhHHHHhhhcCCCCCCcEEEEecCchhHHHh-----
Q 043779 240 GNVSEAWNLDLLQRRLKDMLDG-KRYLLVLDDVWNED------QEKWDQLKCTLTCGSKGSSVVVTTRLAKVASI----- 307 (581)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~~l~~-k~~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~----- 307 (581)
...........+.....+.++. +.-+||+|++++.- +...-.....+.+.-.-+-|.+-|+..--+-.
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 8776666777776666666654 45689999996531 11111222233333344456666652211111
Q ss_pred hCCCCeeeCCCCChH-hHHHHHHhhhcC--CCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 308 VGTLPVYRLSDLSED-DCWLLFKQRAFG--NDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 308 ~~~~~~~~l~~L~~~-e~~~lf~~~a~~--~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
.+...++.+.....+ +...|+...... -....+-...++++.|...++|+.--+.-
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 111236667766544 445555433211 11112223457899999999998766543
No 82
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=2.2e-05 Score=85.37 Aligned_cols=186 Identities=16% Similarity=0.179 Sum_probs=110.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEe-------cCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFV-------FEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v-------~~~~~~~~ 229 (581)
.+++|.+..++.|..++... .-...+.++|++|+||||+|+.++...--.... ..+-.+ ...++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~--~~~~pC~~C~~~~~~~~Dvi- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKT--DLLEPCQECIENVNNSLDII- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccC--CCCCchhHHHHhhcCCCcEE-
Confidence 46889999999999998753 234456799999999999999987631110000 000000 0000100
Q ss_pred HHHHHHHhhCCCCCCcCCHHHH---HHHHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEE-EecCchhH
Q 043779 230 LMTDIITSSGGNVSEAWNLDLL---QRRLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVV-VTTRLAKV 304 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l---~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v 304 (581)
.+.+ ......+++ .+.+... ..+++-++|+|+++......++.|...+......+.+| +|+....+
T Consensus 91 -------eida--asn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 91 -------EMDA--ASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred -------EEec--cccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 0000 000112222 2222211 12566699999998877778888888877655555544 55554445
Q ss_pred HHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHH
Q 043779 305 ASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 305 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai 361 (581)
... ......+++.+++.++....+...+...+.... .+.+..|++.++|.+.-+
T Consensus 162 l~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred hHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 432 334468999999999999888875533222112 155788999999977543
No 83
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.33 E-value=1e-06 Score=87.63 Aligned_cols=291 Identities=21% Similarity=0.146 Sum_probs=176.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH-HHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI-ITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i-l~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
..+.+.++|.|||||||++-.+.. +...|....|+..-.+..-...+..+ ...++..... .+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 567899999999999999998886 56678776665555555444444444 4435443322 1223334555667
Q ss_pred CcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHHhhCCCCeeeCCCCChH-hHHHHHHhhhcCCCC--
Q 043779 261 GKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASIVGTLPVYRLSDLSED-DCWLLFKQRAFGNDT-- 337 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~a~~~~~-- 337 (581)
+++.++|+||....- ..-..+.-.+..+.+.-.|+.|+|..... .....+.+.+|+.. ++.++|...+.....
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 889999999983221 12223334455556666888888844332 22346778888765 788888776532221
Q ss_pred CCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCCCHHHHHHHHhccCcCCCCC-------CCChhHHHHHHHhcCChHh
Q 043779 338 EPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKSNENEWLHVKDSELWNLPQE-------ENSILPALRLSYANLPVEL 410 (581)
Q Consensus 338 ~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~-------~~~i~~~l~~sy~~L~~~~ 410 (581)
.....-......|.++.+|.|++|...++..+.-.. .+-...++.....+.+. .......+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~-~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSP-DEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 111222367899999999999999998888765432 11111111111111111 1346778999999999999
Q ss_pred HHHHHHhcCCCCCCccchhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHcCCceeecCCCCCccCCeEEeChhHHHH
Q 043779 411 RQCFAFCAVFPKNAEIKKERLIHLWMANGFISSKGSLEAEAVGNEIFNELYWRSLIQDFAGDNGSTYNQIYKMHDLVHDL 490 (581)
Q Consensus 411 k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdlv~~~ 490 (581)
+-.|.-++.|...|.-. ...|.+.|-... .+.......+..|++.+++........ .+|+.-+-++.+
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~----a~~Rl~eT~r~Y 309 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGR----ARYRLLETGRRY 309 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhH----HHHHHHHHHHHH
Confidence 99999999998876443 334444432221 122334445677888888765433211 126666666666
Q ss_pred HHHhh
Q 043779 491 AQSIA 495 (581)
Q Consensus 491 ~~~~~ 495 (581)
+..+.
T Consensus 310 alaeL 314 (414)
T COG3903 310 ALAEL 314 (414)
T ss_pred HHHHH
Confidence 65543
No 84
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.31 E-value=1.2e-06 Score=87.66 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=65.1
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC--cHhHHHHHHHHhhCCCCCCc
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF--NVRRLMTDIITSSGGNVSEA 245 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~l~~~il~~l~~~~~~~ 245 (581)
++++.+..-.. + .-..|+|++|+|||||++.++++.... +|+..+||.+.+.. .+.+++..+...+-....+.
T Consensus 158 rvID~l~PIGk---G-QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~ 232 (416)
T PRK09376 158 RIIDLIAPIGK---G-QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDE 232 (416)
T ss_pred eeeeeeccccc---C-ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCC
Confidence 45555554322 2 345699999999999999999965544 89999999999887 77788887763222111111
Q ss_pred CCHHH------HHHHHHHH-hcCcceEEEEecccc
Q 043779 246 WNLDL------LQRRLKDM-LDGKRYLLVLDDVWN 273 (581)
Q Consensus 246 ~~~~~------l~~~l~~~-l~~k~~LlVlDdv~~ 273 (581)
..... .....+.+ -.++++||++|++..
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11111 11111221 357999999999943
No 85
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=2.2e-05 Score=82.51 Aligned_cols=188 Identities=15% Similarity=0.156 Sum_probs=108.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCC----cCcee-----EEEecCCCcH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRH----FEFRI-----WVFVFEDFNV 227 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~-----wv~v~~~~~~ 227 (581)
.+++|.+..++.+..++... .-...+.++|++|+||||+|+.+.+...-... -.+.. .+.....++.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999999998753 12356779999999999999998763211100 00000 0000000000
Q ss_pred hHHHHHHHHhhCCCCCCcCCHHHHH---HHHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC-ch
Q 043779 228 RRLMTDIITSSGGNVSEAWNLDLLQ---RRLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR-LA 302 (581)
Q Consensus 228 ~~l~~~il~~l~~~~~~~~~~~~l~---~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~ 302 (581)
. .+.+. .....+++. +.+... ..+++-++|+|++........+.|...+......+.+|++|. ..
T Consensus 93 ~--------~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~ 162 (451)
T PRK06305 93 L--------EIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162 (451)
T ss_pred E--------Eeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChH
Confidence 0 00000 001122222 111111 125667899999976666667778777776556666666664 33
Q ss_pred hHHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHH
Q 043779 303 KVASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 303 ~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai 361 (581)
.+... ......+++.+++.++....+...+...+...+ .+.+..|++.++|.+.-+
T Consensus 163 kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDA 219 (451)
T ss_pred hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 33222 233457999999999999888876543222122 256888999999977533
No 86
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.30 E-value=3.7e-05 Score=75.85 Aligned_cols=134 Identities=17% Similarity=0.085 Sum_probs=75.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcce
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRY 264 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~ 264 (581)
-+.++|++|+|||++|+.+.......+......++.++. .++ +..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---cCc
Confidence 467999999999999977765321112222223555542 122 22222211 11222223322 235
Q ss_pred EEEEeccccc---------chhhHHHHhhhcCCCCCCcEEEEecCchhHHHhhCC--------CCeeeCCCCChHhHHHH
Q 043779 265 LLVLDDVWNE---------DQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASIVGT--------LPVYRLSDLSEDDCWLL 327 (581)
Q Consensus 265 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~--------~~~~~l~~L~~~e~~~l 327 (581)
+|+||++... ....++.+...+.....+.+||+++........... ...+.+++++.+|...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 123345566666655566677777654333222111 24689999999999999
Q ss_pred HHhhhcC
Q 043779 328 FKQRAFG 334 (581)
Q Consensus 328 f~~~a~~ 334 (581)
+...+-.
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 8887643
No 87
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.3e-05 Score=84.05 Aligned_cols=195 Identities=14% Similarity=0.136 Sum_probs=114.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..--. ....... ...+.-...+.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~~----~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPTP----EPCGKCELCRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCCC----CCCcccHHHHHHhc
Confidence 467899999999999987532 23467799999999999999998742211 1100000 01111111222211
Q ss_pred hhCC-----CCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC-chhHHH
Q 043779 237 SSGG-----NVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR-LAKVAS 306 (581)
Q Consensus 237 ~l~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~ 306 (581)
.... ........+++.+.+... ..+++-++|+|+++......++.|...+......+.+|++|. ...+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 1110 000112233333333221 124556899999988777788888888876555565555544 333332
Q ss_pred h-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 307 I-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 307 ~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
. ......+++.+++.++....+...+...+....+ +.+..|++.++|.+..+..
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~---~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEP---EALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 2 2334578899999999888887765432221222 5678999999998865543
No 88
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.1e-05 Score=84.18 Aligned_cols=189 Identities=15% Similarity=0.154 Sum_probs=113.8
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCC---c-Cc-----eeEEEecCCCcH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRH---F-EF-----RIWVFVFEDFNV 227 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---F-~~-----~~wv~v~~~~~~ 227 (581)
.+++|.+...+.|..++... .-...+.++|+.|+||||+|+.+......... . .| +..+.....++.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 46899999999999998753 23456789999999999999888763210000 0 00 000000011111
Q ss_pred hHHHHHHHHhhCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-Cch
Q 043779 228 RRLMTDIITSSGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLA 302 (581)
Q Consensus 228 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~ 302 (581)
.. +.+ ......+++...+... ..+++-++|+|++...+...++.|...+......+.+|++| ...
T Consensus 93 ~~--------ld~--~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~ 162 (614)
T PRK14971 93 HE--------LDA--ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKH 162 (614)
T ss_pred EE--------ecc--cccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCch
Confidence 10 000 0111233333333221 12345588999998888788888988888766666665544 444
Q ss_pred hHHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 303 KVASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 303 ~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
.+... ......+++.+++.++...++.+.+...+....+ +.+..|++.++|..--+.
T Consensus 163 kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~---~al~~La~~s~gdlr~al 220 (614)
T PRK14971 163 KILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEP---EALNVIAQKADGGMRDAL 220 (614)
T ss_pred hchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 44433 2344589999999999999888766433322222 567889999999776443
No 89
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.28 E-value=1.9e-05 Score=77.18 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=83.3
Q ss_pred ccccchhhHHHHHHHHhcC----------cCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcH
Q 043779 158 EVYGREEDKEKIVERLVKD----------VAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNV 227 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~----------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 227 (581)
.++|.+..+++|.+..... ....+....+.++|++|+||||+|+.+++.....+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 4788887776665432210 011234456779999999999999999863211111111223333211
Q ss_pred hHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc--------hhhHHHHhhhcCCCCCCcEEEEec
Q 043779 228 RRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED--------QEKWDQLKCTLTCGSKGSSVVVTT 299 (581)
Q Consensus 228 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTt 299 (581)
++. ...-+ .........+... ..-+|++|+++... ....+.+...+........+|+++
T Consensus 84 -~l~----~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLV----GEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhh----hhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 11101 0112222222222 23488999996421 223344555555444444566665
Q ss_pred CchhHHH-------hhCC-CCeeeCCCCChHhHHHHHHhhhcC
Q 043779 300 RLAKVAS-------IVGT-LPVYRLSDLSEDDCWLLFKQRAFG 334 (581)
Q Consensus 300 r~~~v~~-------~~~~-~~~~~l~~L~~~e~~~lf~~~a~~ 334 (581)
...+... .... ...+.+++++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4333211 1111 236889999999999999877653
No 90
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.27 E-value=2.2e-05 Score=79.26 Aligned_cols=147 Identities=17% Similarity=0.178 Sum_probs=86.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+...+.+..++... .-..++.++|++|+||||+|+.+++. .... ...++.+. ... ...+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~-~~i~~~l~ 89 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI-DFVRNRLT 89 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH-HHHHHHHH
Confidence 56899999999999998743 24567778999999999999999873 2211 22333332 111 11111111
Q ss_pred hhCCCCCCcCCHHHHHHHHHHH-hcCcceEEEEeccccc-chhhHHHHhhhcCCCCCCcEEEEecCchh-HHHh-hCCCC
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDM-LDGKRYLLVLDDVWNE-DQEKWDQLKCTLTCGSKGSSVVVTTRLAK-VASI-VGTLP 312 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~ 312 (581)
.+ .... +.+.+-++|+||+... .......+...+.....++.+|+||.... +... .+...
T Consensus 90 ~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 RF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 10 0000 1134568999999655 33333445555555556778898887432 1111 12234
Q ss_pred eeeCCCCChHhHHHHHHh
Q 043779 313 VYRLSDLSEDDCWLLFKQ 330 (581)
Q Consensus 313 ~~~l~~L~~~e~~~lf~~ 330 (581)
.+.+...+.++...++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777788777666543
No 91
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.24 E-value=1.4e-05 Score=82.59 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=98.6
Q ss_pred CCccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNV 227 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 227 (581)
.+++.|++.+++++.+.+..... +-..++-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 35788999999999887643111 1134556889999999999999999983 2222 333321
Q ss_pred hHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc-----------chhhHHHHhhhc---CC--CCC
Q 043779 228 RRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE-----------DQEKWDQLKCTL---TC--GSK 291 (581)
Q Consensus 228 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~~ 291 (581)
..+. ....+. ....+...+...-...+.+|+|||+... +......+...+ .. ...
T Consensus 199 ~~l~----~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELV----QKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHh----Hhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111 111110 1111222222222346789999999532 111122233322 21 123
Q ss_pred CcEEEEecCchhHHH-hh-C---CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC
Q 043779 292 GSSVVVTTRLAKVAS-IV-G---TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV 357 (581)
Q Consensus 292 gs~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~ 357 (581)
+..||.||....... .+ . -...+.+++.+.++-.++|+.+..........+ ...+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 567887887543222 11 1 124789999999999999998765433222222 45566666664
No 92
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.24 E-value=4e-05 Score=80.08 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=91.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcC--ceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFE--FRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
...+.|+|++|+|||+|++.+++.. ..... .+++++. .++...+...+... ..+... +.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~~----~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEFK----EKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHHH----HHHH
Confidence 3467899999999999999999843 22221 2345432 23344444444221 222222 2222
Q ss_pred CcceEEEEecccccchh--hHHHHhhhcCC-CCCCcEEEEecCc-hh--------HHHhhCCCCeeeCCCCChHhHHHHH
Q 043779 261 GKRYLLVLDDVWNEDQE--KWDQLKCTLTC-GSKGSSVVVTTRL-AK--------VASIVGTLPVYRLSDLSEDDCWLLF 328 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~iivTtr~-~~--------v~~~~~~~~~~~l~~L~~~e~~~lf 328 (581)
+ .-+|+|||++..... ..+.+...+.. ...+..+|+||.. +. +.+.+.....+.+.+.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348999999643211 11223322221 1234567887763 22 1222233347899999999999999
Q ss_pred HhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 329 KQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 329 ~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
.+.+.......+ +++...|++.+.|.+-.+.
T Consensus 278 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 988765433222 2778888999888876554
No 93
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.5e-05 Score=83.57 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=112.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+..--....... .+..+ .....|..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~---~c~~c----~~c~~i~~ 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE---PCNVC----PPCVEITE 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC---CCCcc----HHHHHHhc
Confidence 46899999999999988753 123456799999999999999988732111110000 00000 00111100
Q ss_pred h-------hCCC-CCCcCCHHHHHHHHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-CchhHHH
Q 043779 237 S-------SGGN-VSEAWNLDLLQRRLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLAKVAS 306 (581)
Q Consensus 237 ~-------l~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~ 306 (581)
. +.+. .....+..++...+... ..+++-++|+|+++..+....+.|...+......+.+|++| ....+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 0 0000 00011122222222211 12445689999998877778888888887665666666544 4444443
Q ss_pred h-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc-hHHHHhhhh
Q 043779 307 I-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP-LAAKTLGSL 367 (581)
Q Consensus 307 ~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P-Lai~~~~~~ 367 (581)
. ......+++.+++.++....+...+...+...+ .+.+..|++.++|.. .++..+-.+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 233457899999999988888765533322122 156788899999976 454544333
No 94
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=5.6e-05 Score=81.33 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=114.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH--
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI-- 234 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i-- 234 (581)
.+++|-+..++.|..++... .-...+.++|+.|+||||+|+.+++..--..... ...+....+-..+....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C~~i~~~~~~ 88 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSCKSIDNDNSL 88 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHHHHHHcCCCC
Confidence 46899999999999999753 2345678999999999999999987421111100 00011111111100000
Q ss_pred -HHhhCCCCCCcCCHHHHHHHHHH---H-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC-chhHHHh-
Q 043779 235 -ITSSGGNVSEAWNLDLLQRRLKD---M-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR-LAKVASI- 307 (581)
Q Consensus 235 -l~~l~~~~~~~~~~~~l~~~l~~---~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~- 307 (581)
+..+.+. .....+++...... . ..+++-++|+|+++..+...++.+...+......+.+|++|. ...+...
T Consensus 89 dv~~idga--s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 89 DVIEIDGA--SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CeEEecCc--ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 0000000 01223333322211 1 135566899999988877788888888876666666666554 3333332
Q ss_pred hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 308 VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 308 ~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
......+++.+++.++...++.+.+...+...+ .+.+..|++.++|.+..+.
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 233457899999999999888877643332222 2667889999999886543
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=6.8e-05 Score=80.94 Aligned_cols=192 Identities=16% Similarity=0.128 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|.+...+.+.+++.... -...+.++|+.|+||||+|+.+....-....-+. .+.+.-.....+..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~ 84 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITN 84 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 468999999999999987642 3355678999999999999998763111100000 00000011111111
Q ss_pred hhCCC-----CCCcCCHHHHHH---HHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEec-CchhHHH
Q 043779 237 SSGGN-----VSEAWNLDLLQR---RLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTT-RLAKVAS 306 (581)
Q Consensus 237 ~l~~~-----~~~~~~~~~l~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~ 306 (581)
..... .......+++.. .+... ..++.-++|+|+++......++.|...+........+|++| ....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 10000 000112222222 22211 13456788999998777778888888777555555555544 4333332
Q ss_pred h-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 307 I-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 307 ~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
. ......+++.+++.++....+...+...+.... .+.+..|++.++|.+..+.
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2 233457889999999999888876643332122 2567788899998876543
No 96
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=0.00011 Score=73.42 Aligned_cols=197 Identities=15% Similarity=0.179 Sum_probs=115.5
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc-------------cCCcCceeEEEecC
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI-------------KRHFEFRIWVFVFE 223 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~v~~ 223 (581)
.+++|.+..++.+...+... .-.....++|+.|+||+++|..+....-- ...++...|+.-..
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 35789999999999998754 23467889999999999999887663211 11222233433210
Q ss_pred CCcHhHHHHHHHHhhC--CCCCCcCCHHHHHHHHHHHh-----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEE
Q 043779 224 DFNVRRLMTDIITSSG--GNVSEAWNLDLLQRRLKDML-----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVV 296 (581)
Q Consensus 224 ~~~~~~l~~~il~~l~--~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 296 (581)
...-..+-...+...+ .........++..+ +.+.+ .+++-++|+|++...+....+.+...+....+..-|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~-i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fIL 158 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQIRE-IKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLIL 158 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHHHH-HHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 0000000001111111 01111122333332 33322 2566799999998888888888888887554443444
Q ss_pred EecCchhHHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 297 VTTRLAKVASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 297 vTtr~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
+|+....+... .+....+++.+++.++..+.+.+....... . .....++..++|.|..+...
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~--~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL--N----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc--h----hHHHHHHHHcCCCHHHHHHH
Confidence 55544444333 344568999999999999999986422111 1 11368899999999766543
No 97
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.17 E-value=4.2e-05 Score=80.98 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=92.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcC--ceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFE--FRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
...+.|+|++|+|||+|++.+.+. ....+. .+++++. ..+...+...+... ..+.. .+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TMEEF----KEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHHHH----HHHHh
Confidence 356889999999999999999984 333332 2334433 23333344443211 12222 22333
Q ss_pred CcceEEEEecccccchh--hHHHHhhhcCC-CCCCcEEEEecCchh---------HHHhhCCCCeeeCCCCChHhHHHHH
Q 043779 261 GKRYLLVLDDVWNEDQE--KWDQLKCTLTC-GSKGSSVVVTTRLAK---------VASIVGTLPVYRLSDLSEDDCWLLF 328 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf 328 (581)
+.-+|||||++..... ..+.+...+.. ...|..+|+||.... +.+.+.....+++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 3458999999643211 11222222211 112445788876431 2233344457999999999999999
Q ss_pred HhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 329 KQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 329 ~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
.+.+.......++ ++...|++.+.|..-.+.
T Consensus 290 ~~~~~~~~~~l~~---e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGIDLPD---EVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCCCCCH---HHHHHHHcCcCCCHHHHH
Confidence 9988643322232 678899999998877554
No 98
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00018 Score=67.31 Aligned_cols=200 Identities=20% Similarity=0.277 Sum_probs=118.3
Q ss_pred chhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEe-cCCCcHhHHHHHHHHhhCC
Q 043779 162 REEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFV-FEDFNVRRLMTDIITSSGG 240 (581)
Q Consensus 162 R~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v-~~~~~~~~l~~~il~~l~~ 240 (581)
...+.++.+..+..... ++.+++.++|.-|+|||.+++..... ..+ +.++-+.+ .+..+...+...++..+..
T Consensus 32 ~~a~h~e~l~~l~~~i~--d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 32 WAADHNEALLMLHAAIA--DGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred hhhhhhHHHHHHHHHHh--cCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 34445555555554333 35569999999999999999954431 111 11222333 3345566778888887766
Q ss_pred CCCCc--CCHHHHHHHHHHHh-cCcc-eEEEEecccccchhhHHHHhhhcCC---CCCCcEEEEecCch--------hHH
Q 043779 241 NVSEA--WNLDLLQRRLKDML-DGKR-YLLVLDDVWNEDQEKWDQLKCTLTC---GSKGSSVVVTTRLA--------KVA 305 (581)
Q Consensus 241 ~~~~~--~~~~~l~~~l~~~l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~--------~v~ 305 (581)
.+... .-.++..+.+.... ++++ ..++.||.+.......+.++..... ++..-+|+..-..+ ...
T Consensus 106 ~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~ 185 (269)
T COG3267 106 QPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLR 185 (269)
T ss_pred CccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHH
Confidence 22211 11233344444443 4566 9999999987776777776655442 22222344443311 111
Q ss_pred HhhCCCCe-eeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhh
Q 043779 306 SIVGTLPV-YRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSL 367 (581)
Q Consensus 306 ~~~~~~~~-~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~ 367 (581)
..-..... |++.|++.++...++..+..+.....+---.+....|.....|.|.+|..++..
T Consensus 186 e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 186 ELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 11111224 899999999999998887765533222222367888999999999999876554
No 99
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.16 E-value=7.3e-05 Score=73.51 Aligned_cols=166 Identities=20% Similarity=0.224 Sum_probs=104.8
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il 235 (581)
++.+.+|+.++..+..++..... .-+..|.|.|.+|.|||.+.+++++... -..+|+++-..++.+.++..|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~--~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC--TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc--ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHH
Confidence 46788999999999998876432 2455668999999999999999998441 1358999999999999999999
Q ss_pred HhhCCCCCCc-------CCHHHHHHHHHHH--hc--CcceEEEEeccccc---chhhHHHH---hhhcCCCCCCcEEEEe
Q 043779 236 TSSGGNVSEA-------WNLDLLQRRLKDM--LD--GKRYLLVLDDVWNE---DQEKWDQL---KCTLTCGSKGSSVVVT 298 (581)
Q Consensus 236 ~~l~~~~~~~-------~~~~~l~~~l~~~--l~--~k~~LlVlDdv~~~---~~~~~~~l---~~~l~~~~~gs~iivT 298 (581)
........+. .+.......+.++ .. ++.++||||++..- +...+..+ ...++ .+ .-.|++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~-~i~iil 154 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EP-TIVIIL 154 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CC-ceEEEE
Confidence 9885222111 1122223333331 11 46899999999432 21222221 11122 12 234444
Q ss_pred cCchh---HHHhhCCCC--eeeCCCCChHhHHHHHHhh
Q 043779 299 TRLAK---VASIVGTLP--VYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 299 tr~~~---v~~~~~~~~--~~~l~~L~~~e~~~lf~~~ 331 (581)
+-... ....+++.. ++....-+.+|...++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43221 222234433 5677888999999988764
No 100
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=7.2e-05 Score=75.11 Aligned_cols=168 Identities=13% Similarity=0.079 Sum_probs=98.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCc--------CceeEEEecCCCcHhHHHHHHHHhhCCC-CCCcCCHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF--------EFRIWVFVFEDFNVRRLMTDIITSSGGN-VSEAWNLDLLQ 252 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--------~~~~wv~v~~~~~~~~l~~~il~~l~~~-~~~~~~~~~l~ 252 (581)
-...+.++|+.|+||||+|..+....--.... +.+-++..+..+|...+ ... .......+++.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~~~~~~~~i~id~iR 92 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVL--------EPEEADKTIKVDQVR 92 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------eccCCCCCCCHHHHH
Confidence 34567799999999999999887642111100 00001111111111100 000 00112334444
Q ss_pred HHHHHHh----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHHh-hCCCCeeeCCCCChHhHHH
Q 043779 253 RRLKDML----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVASI-VGTLPVYRLSDLSEDDCWL 326 (581)
Q Consensus 253 ~~l~~~l----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~e~~~ 326 (581)
+.....- .+++-++|+|+++..+....+.+...+.....++.+|+||.+. .+... .+....+.+.+++.+++.+
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 3322211 2344456789999888888899888888666677777777654 33322 3445689999999999999
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 327 LFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 327 lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
.+....... . .+.+..++..++|.|+.+..+
T Consensus 173 ~L~~~~~~~---~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQALPES---D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhcccC---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 998754111 1 133567789999999866544
No 101
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.14 E-value=2.7e-05 Score=87.99 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=96.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCC------cCceeE-EEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRH------FEFRIW-VFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~w-v~v~~~~~~~~ 229 (581)
+.++||++++.++++.|.... ..-+.++|++|+||||+|+.+.+. +... ....+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~-----~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~------ 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR-----QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL------ 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC-----cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh------
Confidence 468999999999999987642 234459999999999999999873 2211 112222 11110
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHh-cCcceEEEEecccccc-------hhh-HHHHhhhcCCCCCCcEEEEecC
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDML-DGKRYLLVLDDVWNED-------QEK-WDQLKCTLTCGSKGSSVVVTTR 300 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~-~~~l~~~l~~~~~gs~iivTtr 300 (581)
+ ..+......-.+.+...+.+.- .+++.+|++|+++... ..+ -+.+...+.. ..-++|-||.
T Consensus 254 l-------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT 324 (852)
T TIGR03345 254 L-------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATT 324 (852)
T ss_pred h-------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecC
Confidence 0 0000000101122233333322 2468999999996532 111 1124444332 2346777776
Q ss_pred chhHHHh-------hCCCCeeeCCCCChHhHHHHHHhhhcCCCC-CCCchHHHHHHHHHHHcCCCc
Q 043779 301 LAKVASI-------VGTLPVYRLSDLSEDDCWLLFKQRAFGNDT-EPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 301 ~~~v~~~-------~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~-~~~~~l~~~~~~I~~~~~G~P 358 (581)
..+.... ......+.+++++.++...++......-.. ..-.--.+....+++.+.+..
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 5433221 123358999999999999997544321110 000001245566666665543
No 102
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=8.4e-05 Score=77.99 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=93.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCc-C-ceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF-E-FRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~-~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
...+.|+|++|+|||+|++.+++. ..... . .++|++. .+++..+...+... ..+. +.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 345889999999999999999984 33322 2 2445543 34555555544321 1222 222223
Q ss_pred CcceEEEEecccccc-hhhH-HHHhhhcC-CCCCCcEEEEecC-chhH--------HHhhCCCCeeeCCCCChHhHHHHH
Q 043779 261 GKRYLLVLDDVWNED-QEKW-DQLKCTLT-CGSKGSSVVVTTR-LAKV--------ASIVGTLPVYRLSDLSEDDCWLLF 328 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~-~~~~-~~l~~~l~-~~~~gs~iivTtr-~~~v--------~~~~~~~~~~~l~~L~~~e~~~lf 328 (581)
.+.-+|++||+.... ...+ +.+...+. ....|..||+||. .+.- .+.+.....+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345689999996321 1111 12222221 1113447888875 3322 122333457899999999999999
Q ss_pred HhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 329 KQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 329 ~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
.+.+.......++ ++...|++.+.|..-.+.
T Consensus 273 ~~~~~~~~~~l~~---ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcCCCCCH---HHHHHHHhccccCHHHHH
Confidence 9887543332232 678888888888755554
No 103
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.13 E-value=2.3e-05 Score=87.76 Aligned_cols=156 Identities=15% Similarity=0.217 Sum_probs=87.0
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc---cCCc-CceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI---KRHF-EFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~F-~~~~wv~v~~~~~~~~l~~ 232 (581)
+.++||+++++++++.|.... ..-+.++|++|+|||++|+.+++.... ...+ ...+|. + +...+..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~-----~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK-----KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA 251 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC-----CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh
Confidence 468999999999999887542 234569999999999999999884211 1111 223332 1 1111110
Q ss_pred HHHHhhCCCCCCcCCHH-HHHHHHHHHhcCcceEEEEecccccc---------hhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 233 DIITSSGGNVSEAWNLD-LLQRRLKDMLDGKRYLLVLDDVWNED---------QEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~-~l~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
+.... .+.+ .+...+.+.-..++.+|++|+++... ...-+.+...+.. ..-++|-+|...
T Consensus 252 -------~~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~ 321 (731)
T TIGR02639 252 -------GTKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYE 321 (731)
T ss_pred -------hcccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHH
Confidence 00000 1122 22222222223468899999996321 1122334444432 223555555543
Q ss_pred hHHHh-------hCCCCeeeCCCCChHhHHHHHHhhh
Q 043779 303 KVASI-------VGTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 303 ~v~~~-------~~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
+.... ......+++++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 32111 1223478999999999999998654
No 104
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=8.4e-05 Score=79.39 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=92.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCc--CceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHF--EFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
..+.|+|..|+|||.|++.+++. ....+ ..++|++. .++...+...+... ..+. +++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~~----f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGDS----FRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHHH----HHHHhhc
Confidence 35889999999999999999984 32222 12334433 33444444433211 1222 2222322
Q ss_pred cceEEEEecccccch-hhHH-HHhhhcCC-CCCCcEEEEecCch---------hHHHhhCCCCeeeCCCCChHhHHHHHH
Q 043779 262 KRYLLVLDDVWNEDQ-EKWD-QLKCTLTC-GSKGSSVVVTTRLA---------KVASIVGTLPVYRLSDLSEDDCWLLFK 329 (581)
Q Consensus 262 k~~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~ 329 (581)
.=+|+|||+..... ..|. .+...+.. ...+..|||||+.. .+.+.+....++.+.+.+.+.-..++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 35889999964321 1222 22222221 12355688888742 233344555689999999999999999
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 330 QRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 330 ~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
+++.......+ .+++.-|++++.+..-.|.
T Consensus 457 kka~~r~l~l~---~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 457 KKAVQEQLNAP---PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHhcCCCCC---HHHHHHHHHhccCCHHHHH
Confidence 88765433333 2677888888777655444
No 105
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.08 E-value=2.6e-05 Score=79.92 Aligned_cols=119 Identities=14% Similarity=0.172 Sum_probs=75.6
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.++++.++..+.+...|... +.+.++|++|+|||++|+.+++.......|..+.||.+++.++..+++..+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP 247 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP 247 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC
Confidence 45788899999999988742 35668999999999999999985444456777889999988886665543211
Q ss_pred hhCCCCCC-cCCHHHHHHHHHHHh--cCcceEEEEecccccchhh-HHHHhhhc
Q 043779 237 SSGGNVSE-AWNLDLLQRRLKDML--DGKRYLLVLDDVWNEDQEK-WDQLKCTL 286 (581)
Q Consensus 237 ~l~~~~~~-~~~~~~l~~~l~~~l--~~k~~LlVlDdv~~~~~~~-~~~l~~~l 286 (581)
.... .....-..+.+.... .+++++||+|++...+... +..+...+
T Consensus 248 ----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 248 ----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred ----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 1000 000011122222222 2468999999996655433 44444433
No 106
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.08 E-value=0.00013 Score=68.49 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=74.8
Q ss_pred cccCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 153 VVAQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 153 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
.++-+.++|-+.+++.|++-...-..+. ...-+.+||..|+|||++++.+.+...-.+ .+ -|.+..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k--------- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSK--------- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECH---------
Confidence 3445679999999999877544332222 334566899999999999999987321111 11 122211
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccc-cchhhHHHHhhhcCCC----CCCcEEEEecCchhH
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWN-EDQEKWDQLKCTLTCG----SKGSSVVVTTRLAKV 304 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~----~~gs~iivTtr~~~v 304 (581)
.+..+...+...++. ...||+|++||+.- .....+..+++.|..+ .....|..||...+.
T Consensus 89 ----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 89 ----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 111233344444442 35799999999842 2345567777776532 234456666665554
No 107
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=1.4e-05 Score=80.61 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=60.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC--CcHhHHHHHHHHhhCCCCCCcCCH------HHHHHHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED--FNVRRLMTDIITSSGGNVSEAWNL------DLLQRRL 255 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~l~~~il~~l~~~~~~~~~~------~~l~~~l 255 (581)
..++|+|++|+|||||++.+++.... ++|+..+|+.+.+. .++.+++..++..+-....+.... ....+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 46789999999999999999985433 37999999999866 788899998854432222111111 1111222
Q ss_pred HHH-hcCcceEEEEecccc
Q 043779 256 KDM-LDGKRYLLVLDDVWN 273 (581)
Q Consensus 256 ~~~-l~~k~~LlVlDdv~~ 273 (581)
... -.+++++|++|++..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 222 358999999999953
No 108
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.04 E-value=0.00067 Score=69.06 Aligned_cols=175 Identities=18% Similarity=0.163 Sum_probs=98.5
Q ss_pred CCccccchhhHHHHH-HHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH
Q 043779 156 QPEVYGREEDKEKIV-ERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~-~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 234 (581)
++-++|-......-. ..+..... .....+.|+|..|.|||.|++++.+ ......+....+.++. ......+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g--~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~ 158 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPG--GAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDF 158 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccC--CcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHH
Confidence 444567655444332 22222111 2467889999999999999999999 4444554433444432 2333333
Q ss_pred HHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc-----hhhHHHHhhhcCCCCCCcEEEEecCc--------
Q 043779 235 ITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED-----QEKWDQLKCTLTCGSKGSSVVVTTRL-------- 301 (581)
Q Consensus 235 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~gs~iivTtr~-------- 301 (581)
+..+.. .-....++.. .-=++++||++--. +..+-.+...+.. .|-.||+|++.
T Consensus 159 v~a~~~---------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 159 VKALRD---------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHHh---------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccc
Confidence 333321 1122334433 23488999996421 1222222223332 33389999963
Q ss_pred -hhHHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHc
Q 043779 302 -AKVASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKC 354 (581)
Q Consensus 302 -~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~ 354 (581)
+.+.+.+...-++.+.+++.+....++.+++.......++ ++..-|++..
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~---ev~~~la~~~ 276 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPD---EVLEFLAKRL 276 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHh
Confidence 2344555556689999999999999999977655443333 4444444443
No 109
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=0.00021 Score=74.94 Aligned_cols=154 Identities=13% Similarity=0.143 Sum_probs=86.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGK 262 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 262 (581)
...+.|+|++|+|||+|++.+++... .....+++++. ..+...+...+... .. ..++...+ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 35678999999999999999998432 22223344432 23344444444221 11 12333333 3
Q ss_pred ceEEEEecccccchhh--HHHHhhhcCC-CCCCcEEEEecCch---------hHHHhhCCCCeeeCCCCChHhHHHHHHh
Q 043779 263 RYLLVLDDVWNEDQEK--WDQLKCTLTC-GSKGSSVVVTTRLA---------KVASIVGTLPVYRLSDLSEDDCWLLFKQ 330 (581)
Q Consensus 263 ~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~ 330 (581)
.-+|++||+....... .+.+...+.. ...|..||+||... .+...+.....+++.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 4588899985532211 1222222210 11345788888532 1222233345889999999999999998
Q ss_pred hhcCCCCCCCchHHHHHHHHHHHcCCC
Q 043779 331 RAFGNDTEPPMNILAIAKEIVKKCKGV 357 (581)
Q Consensus 331 ~a~~~~~~~~~~l~~~~~~I~~~~~G~ 357 (581)
++.......++ ++..-|+..+.|.
T Consensus 283 k~~~~~~~l~~---evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIRIEE---TALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCCCCH---HHHHHHHHhcCCC
Confidence 87544332222 5666677776654
No 110
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.01 E-value=6.3e-05 Score=85.37 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=86.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc---cCCc-CceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI---KRHF-EFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~F-~~~~wv~v~~~~~~~~l~~ 232 (581)
+.++||+.+++++++.|.... ..-+.++|++|+|||++|+.++..... .... ...+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-----~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-----KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-----cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh-
Confidence 458999999999999997642 224459999999999999999874211 1111 133442 1 221111
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc--------hhhHHHHhhhcCCCCCCcEEEEecCchhH
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED--------QEKWDQLKCTLTCGSKGSSVVVTTRLAKV 304 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~~v 304 (581)
.+......-.+.+...+.+.-..++.+|++|+++.-. ...-+.+...+.. ..-++|.+|...+.
T Consensus 248 ------ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey 319 (821)
T CHL00095 248 ------AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEY 319 (821)
T ss_pred ------ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHH
Confidence 1111111111222333333333568999999995211 0112233333332 23466666665554
Q ss_pred HHh-------hCCCCeeeCCCCChHhHHHHHHhh
Q 043779 305 ASI-------VGTLPVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 305 ~~~-------~~~~~~~~l~~L~~~e~~~lf~~~ 331 (581)
... ......+.+...+.++...++...
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 322 122347888999999988887643
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.97 E-value=2.3e-05 Score=67.75 Aligned_cols=96 Identities=22% Similarity=0.085 Sum_probs=52.3
Q ss_pred EEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC-cce
Q 043779 186 YPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG-KRY 264 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~-k~~ 264 (581)
|.|+|++|+|||++|+.+++.. ..+ .+.++.+...+ .........+...+...-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---ccccccccccc---------------ccccccccccccccccccccccce
Confidence 5699999999999999999843 211 12222221110 01111222333333332223 389
Q ss_pred EEEEecccccchhh-----------HHHHhhhcCCCC---CCcEEEEecCc
Q 043779 265 LLVLDDVWNEDQEK-----------WDQLKCTLTCGS---KGSSVVVTTRL 301 (581)
Q Consensus 265 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtr~ 301 (581)
+|++||++...... ...+...+.... .+..+|.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996543332 445555555333 34577777775
No 112
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.95 E-value=8.3e-05 Score=68.08 Aligned_cols=147 Identities=18% Similarity=0.271 Sum_probs=81.5
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc-CceeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF-EFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~l~~~il 235 (581)
.++||-++-++.+.-+..+ ++.+-+.|.||||+||||-+..+++.. ....+ +.+.
T Consensus 27 ~dIVGNe~tv~rl~via~~-----gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vL------------------ 82 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE-----GNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVL------------------ 82 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc-----CCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhh------------------
Confidence 4689999999888877654 366778899999999999887777621 11111 1111
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHhc-------CcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC-chhHHHh
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDMLD-------GKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR-LAKVASI 307 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l~-------~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~ 307 (581)
++ +.++....+....+++.+.+ ++--.+|||...++....-..++..+.--++.+|..+... +..+...
T Consensus 83 -EL--NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEP 159 (333)
T KOG0991|consen 83 -EL--NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEP 159 (333)
T ss_pred -hc--cCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhh
Confidence 11 22223334445555544432 3445789999987765555556655543334444433332 2222222
Q ss_pred hCC-CCeeeCCCCChHhHHHHHHh
Q 043779 308 VGT-LPVYRLSDLSEDDCWLLFKQ 330 (581)
Q Consensus 308 ~~~-~~~~~l~~L~~~e~~~lf~~ 330 (581)
+.. .-..+...|++.+...=+..
T Consensus 160 IQSRCAiLRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 160 IQSRCAILRYSKLSDQQILKRLLE 183 (333)
T ss_pred HHhhhHhhhhcccCHHHHHHHHHH
Confidence 211 12455566666655444443
No 113
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.94 E-value=0.0003 Score=78.80 Aligned_cols=165 Identities=21% Similarity=0.206 Sum_probs=90.9
Q ss_pred CCccccchhhHHHHHHHHhcCcC-CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVA-GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 234 (581)
+.+.+|.++.+++|+++|..... +.....++.++|++|+||||+|+.++. .....|- -+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE---EEEcCCCCCHHHhccch
Confidence 45689999999999998874221 112345788999999999999999997 3332221 12333333322221110
Q ss_pred HHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhh----HHHHhhhcCCC---------------CCCcEE
Q 043779 235 ITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEK----WDQLKCTLTCG---------------SKGSSV 295 (581)
Q Consensus 235 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~i 295 (581)
....+. ....+...+...- ...-+++||.+....... .+.+...+... -....+
T Consensus 396 -~~~~g~-----~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYIGS-----MPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccCCC-----CCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 001111 1122333333321 234478899995443221 24444444321 133455
Q ss_pred EEecCchhHHHh-hCCCCeeeCCCCChHhHHHHHHhhh
Q 043779 296 VVTTRLAKVASI-VGTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 296 ivTtr~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
|.|+....+... .+...++++.+++.+|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 566654433222 2333588999999999888877765
No 114
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00046 Score=68.72 Aligned_cols=187 Identities=13% Similarity=0.077 Sum_probs=104.7
Q ss_pred hhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcC-----ceeEEEecCCCcHhHHHHHHHHhh
Q 043779 164 EDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFE-----FRIWVFVFEDFNVRRLMTDIITSS 238 (581)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-----~~~wv~v~~~~~~~~l~~~il~~l 238 (581)
...+.+...+... .-...+.++|+.|+||+++|..+....--..... ++-|+..+..+|..-+... -+.-
T Consensus 11 ~~~~~l~~~~~~~----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~~ 85 (319)
T PRK08769 11 RAYDQTVAALDAG----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNRT 85 (319)
T ss_pred HHHHHHHHHHHcC----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCcc
Confidence 3455666666543 2344678999999999999988876321111010 0111111111111100000 0000
Q ss_pred CCCCCCcCCHHHHHHHHHHHh----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hhHHHh-hCCCC
Q 043779 239 GGNVSEAWNLDLLQRRLKDML----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AKVASI-VGTLP 312 (581)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~~~l----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~ 312 (581)
+.........+++.+.....- .+++-++|+|++...+...-+.+...+.....++.+|++|.+ ..+... .+...
T Consensus 86 ~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq 165 (319)
T PRK08769 86 GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165 (319)
T ss_pred cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhhe
Confidence 000000112333333222111 245679999999888888888888888876677777766664 334333 34455
Q ss_pred eeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 313 VYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 313 ~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
.+.+.+++.+++.+.+.... . .. ..+..++..++|.|+.+..+
T Consensus 166 ~i~~~~~~~~~~~~~L~~~~----~-~~----~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLAQG----V-SE----RAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred EeeCCCcCHHHHHHHHHHcC----C-Ch----HHHHHHHHHcCCCHHHHHHH
Confidence 88999999999999887641 1 11 22667899999999876544
No 115
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.89 E-value=7e-05 Score=77.73 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=97.1
Q ss_pred CccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.++.|.+.+++++.+.+..... +-.....+.++|++|+|||++|+.+++ .....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----
Confidence 3567999999988887642111 112345677999999999999999998 333333 222211
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc-----------hh---hHHHHhhhcC--CCCCC
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED-----------QE---KWDQLKCTLT--CGSKG 292 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----------~~---~~~~l~~~l~--~~~~g 292 (581)
.+.. ...+ .....+...+.....+.+.+|+||++.... .. ....+...+. ....+
T Consensus 252 eL~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1111 1111 011122222333334578899999984210 00 1111222222 12345
Q ss_pred cEEEEecCchhHHHh-hC----CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 293 SSVVVTTRLAKVASI-VG----TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 293 s~iivTtr~~~v~~~-~~----~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
..||+||...+.... +- ....+++...+.++..++|..+..........+ ...++..+.|.-
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 678888875554333 21 123788999999999999987764432222222 345555665543
No 116
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=0.00011 Score=79.43 Aligned_cols=208 Identities=13% Similarity=0.117 Sum_probs=104.2
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC---cHhHHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF---NVRRLMT 232 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~---~~~~l~~ 232 (581)
-.+++|-++.++++..|+...........++.|+|++|+||||+++.++... .++..-|++-.... +......
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l----~~~~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL----GIQVQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh----hhHHHHHhhhhhhcccccccccch
Confidence 3578999999999999997654322334678999999999999999999732 23334453211100 0111111
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHH---H----hcCcceEEEEeccccc---chhhHHHHhh-hcCCCCCCcEEEEecCc
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKD---M----LDGKRYLLVLDDVWNE---DQEKWDQLKC-TLTCGSKGSSVVVTTRL 301 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~---~----l~~k~~LlVlDdv~~~---~~~~~~~l~~-~l~~~~~gs~iivTtr~ 301 (581)
.+..++................... . ..+++.+|++|++... ....+..+.. .....+.-.-|+|||-.
T Consensus 159 s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~ 238 (637)
T TIGR00602 159 SLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITES 238 (637)
T ss_pred hhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCC
Confidence 2222221111111111111111111 1 1346789999999321 1223334433 22222222345556632
Q ss_pred hh---------HH-------HhhC--CCCeeeCCCCChHhHHHHHHhhhcCCCCC--CCc--hHHHHHHHHHHHcCCCch
Q 043779 302 AK---------VA-------SIVG--TLPVYRLSDLSEDDCWLLFKQRAFGNDTE--PPM--NILAIAKEIVKKCKGVPL 359 (581)
Q Consensus 302 ~~---------v~-------~~~~--~~~~~~l~~L~~~e~~~lf~~~a~~~~~~--~~~--~l~~~~~~I~~~~~G~PL 359 (581)
.. .. .... ....+.++|++..+....+...+-..... ... .-.+....|+..++|--.
T Consensus 239 ~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiR 318 (637)
T TIGR00602 239 LEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIR 318 (637)
T ss_pred ccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHH
Confidence 11 11 1111 12358999999999666665554321110 000 012566777888888755
Q ss_pred HHHHhhhh
Q 043779 360 AAKTLGSL 367 (581)
Q Consensus 360 ai~~~~~~ 367 (581)
.+...-.+
T Consensus 319 sAIn~LQf 326 (637)
T TIGR00602 319 SAINSLQF 326 (637)
T ss_pred HHHHHHHH
Confidence 54433333
No 117
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.87 E-value=0.00049 Score=77.77 Aligned_cols=164 Identities=20% Similarity=0.198 Sum_probs=85.9
Q ss_pred CccccchhhHHHHHHHHhcCc-CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDV-AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il 235 (581)
.+++|.+..++.+.+++.... .+.....++.++|++|+|||++|+.+.+. ....|- -++.+...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRG--- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcC---
Confidence 457899999999988765321 11123347889999999999999999983 333331 122222222222210
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccch----hhHHHHhhhcCC--------C-------CCCcEEE
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ----EKWDQLKCTLTC--------G-------SKGSSVV 296 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~--------~-------~~gs~ii 296 (581)
. . ..........+.+.+..... .+-+|+||++..... .....+...+.. . ..+..+|
T Consensus 392 -~-~-~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 392 -H-R-RTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred -C-C-CceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0 0 00001112233333443322 334789999955422 111223332221 1 0233455
Q ss_pred EecCchh-HH-HhhCCCCeeeCCCCChHhHHHHHHhhh
Q 043779 297 VTTRLAK-VA-SIVGTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 297 vTtr~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
.||.... +. ........+++.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 6665432 11 122333588999999998888886643
No 118
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.85 E-value=0.00019 Score=75.75 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=90.0
Q ss_pred CccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC---CcCceeEEEecCCC
Q 043779 157 PEVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR---HFEFRIWVFVFEDF 225 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~wv~v~~~~ 225 (581)
.++.|.+.+++++.+.+...- .+-...+-+.++|++|+|||++|+.+++...... ......++++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 457789999999888764211 0112345678999999999999999998432110 0122334444321
Q ss_pred cHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHH-hcCcceEEEEecccccc-------hh-----hHHHHhhhcCC--CC
Q 043779 226 NVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDM-LDGKRYLLVLDDVWNED-------QE-----KWDQLKCTLTC--GS 290 (581)
Q Consensus 226 ~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~-------~~-----~~~~l~~~l~~--~~ 290 (581)
++ +....+.. ......+....+.. ..+++++|+||+++..- .. ....+...+.. ..
T Consensus 261 ---eL----l~kyvGet--e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGET--ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccchH--HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 11110000 00111122222222 13578999999995320 01 12233333332 12
Q ss_pred CCcEEEEecCchhHHHh-h-C--C-CCeeeCCCCChHhHHHHHHhhhc
Q 043779 291 KGSSVVVTTRLAKVASI-V-G--T-LPVYRLSDLSEDDCWLLFKQRAF 333 (581)
Q Consensus 291 ~gs~iivTtr~~~v~~~-~-~--~-~~~~~l~~L~~~e~~~lf~~~a~ 333 (581)
.+..||.||...+.... + . . ...+++...+.++..++|..+..
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 45567777765543221 1 1 1 23689999999999999998763
No 119
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.84 E-value=0.00027 Score=72.92 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=97.3
Q ss_pred CccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.++.|.+..+++|.+.+...- .+-...+-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 457899988888887664211 11134567889999999999999999983 22222 22211 1
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc-----------chh---hHHHHhhhcCC--CCCC
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE-----------DQE---KWDQLKCTLTC--GSKG 292 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~g 292 (581)
.+. ....+. ....+...+.......+.+|+||++... +.. .+..+...+.. ...+
T Consensus 214 ~l~----~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFV----QKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHH----HHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111 111111 1122223333333457899999998431 011 11222222221 2345
Q ss_pred cEEEEecCchhHHHh--hC---CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 293 SSVVVTTRLAKVASI--VG---TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 293 s~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
..||+||...+.... .. -...+.+...+.++...+|..+..........+ ...+++.+.|.-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 678888875543221 11 123688888899888888886654332222222 445666676653
No 120
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.84 E-value=0.00041 Score=62.33 Aligned_cols=137 Identities=20% Similarity=0.188 Sum_probs=78.6
Q ss_pred cchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC------------------CcCceeEEEec
Q 043779 161 GREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR------------------HFEFRIWVFVF 222 (581)
Q Consensus 161 GR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~F~~~~wv~v~ 222 (581)
|-+...+.|.+.+... .-...+.++|+.|+||+++|..+.+..--.. ......|+.-.
T Consensus 1 gq~~~~~~L~~~~~~~----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 76 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD 76 (162)
T ss_dssp S-HHHHHHHHHHHHCT----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT
T ss_pred CcHHHHHHHHHHHHcC----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc
Confidence 4456667777777653 2334678999999999999998876321111 11222222211
Q ss_pred CCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHh-----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEE
Q 043779 223 EDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDML-----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVV 297 (581)
Q Consensus 223 ~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 297 (581)
.. ......+++.. +...+ .++.=++|+||++.......+.|+..+.....++.+|+
T Consensus 77 ~~------------------~~~i~i~~ir~-i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 77 KK------------------KKSIKIDQIRE-IIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TS------------------SSSBSHHHHHH-HHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred cc------------------cchhhHHHHHH-HHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 11 00123344432 22222 23566999999999888999999999988888888888
Q ss_pred ecCchh-HHH-hhCCCCeeeCCCCC
Q 043779 298 TTRLAK-VAS-IVGTLPVYRLSDLS 320 (581)
Q Consensus 298 Ttr~~~-v~~-~~~~~~~~~l~~L~ 320 (581)
+|.+.+ +.. ..+....+.+.++|
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE----
T ss_pred EECChHHChHHHHhhceEEecCCCC
Confidence 888654 333 33444567776654
No 121
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.84 E-value=0.00014 Score=63.25 Aligned_cols=88 Identities=19% Similarity=0.019 Sum_probs=45.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCc-
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGK- 262 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k- 262 (581)
..+.|+|++|+||||+++.++... .......+++..+........... ...................+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 478899999999999999999842 222223444444433222221111 011111111112222223333333333
Q ss_pred ceEEEEecccccc
Q 043779 263 RYLLVLDDVWNED 275 (581)
Q Consensus 263 ~~LlVlDdv~~~~ 275 (581)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997653
No 122
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.84 E-value=0.00019 Score=81.54 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=84.8
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc------CceeE-EEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF------EFRIW-VFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~w-v~v~~~~~~~~ 229 (581)
+.++||+.++.++++.|.... ...+.++|++|+|||++|+.+... +.... ...+| +..+ .
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~-----~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~l~l~------~ 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT-----KNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMG------A 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC-----cCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEEEehh------h
Confidence 458999999999999997642 234559999999999999999873 22111 12222 1111 1
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHh-cCcceEEEEecccccch--------hhHHHHhhhcCCCCCCcEEEEecC
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDML-DGKRYLLVLDDVWNEDQ--------EKWDQLKCTLTCGSKGSSVVVTTR 300 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~~~--------~~~~~l~~~l~~~~~gs~iivTtr 300 (581)
+. .+......-.+.+...+.+.. .+++.+|++|+++.... +.-+.+...+.. ..-++|-+|.
T Consensus 245 l~-------ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt 315 (857)
T PRK10865 245 LV-------AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 315 (857)
T ss_pred hh-------hccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCC
Confidence 11 011111111122333333322 25689999999964321 112223333322 2346666666
Q ss_pred chhHHHhh-------CCCCeeeCCCCChHhHHHHHHhhh
Q 043779 301 LAKVASIV-------GTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 301 ~~~v~~~~-------~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
..+....+ .....+.+...+.++...++....
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 55532211 222356677778888888886554
No 123
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.83 E-value=0.00029 Score=80.37 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=85.8
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc------CceeEEEecCCCcHhHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF------EFRIWVFVFEDFNVRRL 230 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~wv~v~~~~~~~~l 230 (581)
+.++||++++.+++..|.... ...+.++|++|+|||++|..+... +...+ ...+|.. ++..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~-----~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT-----KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGAL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC-----CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHHH
Confidence 458999999999999997642 234458999999999999998874 22211 1222221 11111
Q ss_pred HHHHHHhhCCCCCCcCCHHHHHHHHHHHhc-CcceEEEEecccccc--------hhhHHHHhhhcCCCCCCcEEEEecCc
Q 043779 231 MTDIITSSGGNVSEAWNLDLLQRRLKDMLD-GKRYLLVLDDVWNED--------QEKWDQLKCTLTCGSKGSSVVVTTRL 301 (581)
Q Consensus 231 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~ 301 (581)
. .+......-...+...+...-. +++.+|++|+++... .+.-+.+...+. ...-.+|-+|..
T Consensus 241 ~-------a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~ 311 (852)
T TIGR03346 241 I-------AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTL 311 (852)
T ss_pred h-------hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcH
Confidence 1 0111111111223333333222 468999999996421 111222333322 223456655554
Q ss_pred hhHHHh-------hCCCCeeeCCCCChHhHHHHHHhhh
Q 043779 302 AKVASI-------VGTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 302 ~~v~~~-------~~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
.+.... ......+.+...+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 543221 1233468899999999999887653
No 124
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.82 E-value=0.00015 Score=80.48 Aligned_cols=156 Identities=17% Similarity=0.237 Sum_probs=86.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC-C---cCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR-H---FEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~---F~~~~wv~v~~~~~~~~l~~ 232 (581)
+.++||+.++.++++.|.... . .-+.++|++|+|||++|+.++....... . ..+.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~----~-~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR----K-NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC----C-CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 358999999999999998642 2 2345899999999999999987321110 1 12233311 11111
Q ss_pred HHHHhhCCCCCCcCCHHH-HHHHHHHHhcCcceEEEEeccccc--------chhhHH-HHhhhcCCCCCCcEEEEecCch
Q 043779 233 DIITSSGGNVSEAWNLDL-LQRRLKDMLDGKRYLLVLDDVWNE--------DQEKWD-QLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~-l~~~l~~~l~~k~~LlVlDdv~~~--------~~~~~~-~l~~~l~~~~~gs~iivTtr~~ 302 (581)
+ .+.... .+.+. +...+...-+.++.+|++|+++.. ...+.. .+...+.. ..-++|-+|...
T Consensus 254 --l---aG~~~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~ 325 (758)
T PRK11034 254 --L---AGTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQ 325 (758)
T ss_pred --h---cccchh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChH
Confidence 1 111111 11122 222222222346789999999632 112222 23333322 234566666544
Q ss_pred hHHHh-------hCCCCeeeCCCCChHhHHHHHHhhh
Q 043779 303 KVASI-------VGTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 303 ~v~~~-------~~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
+.... ......+.+++++.+++..++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 43221 1233579999999999999988653
No 125
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0013 Score=65.50 Aligned_cols=176 Identities=11% Similarity=0.062 Sum_probs=105.0
Q ss_pred hHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC-------CcCceeEEEecCCCcHhHHHHHHHHh
Q 043779 165 DKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR-------HFEFRIWVFVFEDFNVRRLMTDIITS 237 (581)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------~F~~~~wv~v~~~~~~~~l~~~il~~ 237 (581)
..+++...+... .-...+.++|+.|+||+++|..+..-.--.. ....+-++..+..+|...+
T Consensus 11 ~~~~l~~~~~~~----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------- 79 (319)
T PRK06090 11 VWQNWKAGLDAG----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------- 79 (319)
T ss_pred HHHHHHHHHHcC----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-------
Confidence 345566665443 2345778999999999999998865311100 0000011111122221111
Q ss_pred hCCC-CCCcCCHHHHHHHHHHHh-----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHH-hhC
Q 043779 238 SGGN-VSEAWNLDLLQRRLKDML-----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVAS-IVG 309 (581)
Q Consensus 238 l~~~-~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~ 309 (581)
... .......+++.. +.+.+ .++.=++|+|++...+....+.+...+....+++.+|++|.+. .+.. ..+
T Consensus 80 -~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 80 -KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred -ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 000 011123444433 22222 2445689999998888888999998988777777777666644 3433 334
Q ss_pred CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 310 TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 310 ~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
....+.+.+++.+++.+.+.... . + ....++..++|.|+.+..+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~----~--~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQG----I--T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcC----C--c-----hHHHHHHHcCCCHHHHHHH
Confidence 45689999999999999987642 1 1 1356789999999977544
No 126
>CHL00176 ftsH cell division protein; Validated
Probab=97.82 E-value=0.00036 Score=76.12 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=97.4
Q ss_pred CccccchhhHHHHHHH---HhcCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVER---LVKDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~---L~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.++.|.++.++++.+. +..... +....+-+.++|++|+|||+||+.+++.. . .-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 4577887666655444 433211 11234568899999999999999998732 1 123333211 1
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc----------hh----hHHHHhhhcC--CCCCCc
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED----------QE----KWDQLKCTLT--CGSKGS 293 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~----------~~----~~~~l~~~l~--~~~~gs 293 (581)
+. ....+ .....+...+.......+++|+|||++... .. .+..+...+. ....+.
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 112233334444455778999999994321 11 1223332232 123456
Q ss_pred EEEEecCchhHHHh-h-C---CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC
Q 043779 294 SVVVTTRLAKVASI-V-G---TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV 357 (581)
Q Consensus 294 ~iivTtr~~~v~~~-~-~---~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~ 357 (581)
.||.||...+.... + . -...+.+...+.++-.++++.++....... ......+++.+.|.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G~ 387 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPGF 387 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCCC
Confidence 67777776543321 1 1 124788888899999999988775422111 13356778888773
No 127
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.80 E-value=0.00054 Score=73.47 Aligned_cols=182 Identities=16% Similarity=0.150 Sum_probs=96.7
Q ss_pred CccccchhhHHHHHHHHh---cCc----CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLV---KDV----AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~---~~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|-++.++++.+++. ... .+....+-+.++|++|+|||+||+.+++.. ... ++.++.. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~----~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS----D 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH----H
Confidence 467888877766655443 211 012234457799999999999999999732 211 2332211 1
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc----------hhhH----HHHhhhcC--CCCCCc
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED----------QEKW----DQLKCTLT--CGSKGS 293 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~----~~l~~~l~--~~~~gs 293 (581)
+. ....+ .....+...+.......+.+|+|||+.... ...+ ..+...+. ....+.
T Consensus 124 ~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11111 112233334444444567899999994311 1112 12222222 122345
Q ss_pred EEEEecCchhHHH-hh----CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC-chHHH
Q 043779 294 SVVVTTRLAKVAS-IV----GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV-PLAAK 362 (581)
Q Consensus 294 ~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~-PLai~ 362 (581)
.||.||....... .+ .-...+.+...+.++-.++|..+......... .-...+++.+.|. +--|.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~sgadl~ 265 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFSGADLA 265 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCCHHHHH
Confidence 6777776543221 11 12247889989998888888877643322111 1245778888774 33343
No 128
>PRK08116 hypothetical protein; Validated
Probab=97.80 E-value=0.00011 Score=71.86 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=57.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcce
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRY 264 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~ 264 (581)
.+.++|.+|+|||.||..+++... .+-..+++++ ..+++..+........ .....+ +.+.+.+-.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d- 180 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD- 180 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC-
Confidence 477999999999999999999532 2223344544 3445555554443211 111222 223333333
Q ss_pred EEEEecccccchhhHHH--HhhhcCC-CCCCcEEEEecCc
Q 043779 265 LLVLDDVWNEDQEKWDQ--LKCTLTC-GSKGSSVVVTTRL 301 (581)
Q Consensus 265 LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 301 (581)
||||||+.......|.. +...+.. -..+..+||||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996443334433 3333321 1245679999973
No 129
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.0006 Score=68.87 Aligned_cols=161 Identities=10% Similarity=0.082 Sum_probs=93.9
Q ss_pred cccc-chhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCce--------eEEEecCCCcHh
Q 043779 158 EVYG-REEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFR--------IWVFVFEDFNVR 228 (581)
Q Consensus 158 ~~vG-R~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~--------~wv~v~~~~~~~ 228 (581)
.++| -+..++.+...+... .-.....++|+.|+||||+|..+.+..--....... ..+.....+|..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~ 81 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH 81 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE
Confidence 3456 566677777777543 234566899999999999999886631111100000 000000011110
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-h
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-K 303 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~ 303 (581)
.+ .. .......+++.+.+... ..+.+-++|+|++...+....+.+...+.....++.+|++|.+. .
T Consensus 82 ~i--------~~-~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 82 LV--------AP-DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred Ee--------cc-ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 00 00 00112234444333222 23455689999998888778888888888777777777777643 3
Q ss_pred HHHh-hCCCCeeeCCCCChHhHHHHHHhh
Q 043779 304 VASI-VGTLPVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 304 v~~~-~~~~~~~~l~~L~~~e~~~lf~~~ 331 (581)
+... .+....+++.+++.++....+.+.
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3332 234558999999999998888754
No 130
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00034 Score=69.79 Aligned_cols=176 Identities=10% Similarity=0.024 Sum_probs=104.7
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc---Cc-----eeEEEecCCCcHhHHHHHHHHh
Q 043779 166 KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF---EF-----RIWVFVFEDFNVRRLMTDIITS 237 (581)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~v~~~~~~~~l~~~il~~ 237 (581)
-+.+...+... .-...+.++|+.|+||+++|..+..-.--.... .| +-++..+..+|...+
T Consensus 11 ~~~l~~~~~~~----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------- 79 (325)
T PRK06871 11 YQQITQAFQQG----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------- 79 (325)
T ss_pred HHHHHHHHHcC----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-------
Confidence 45566666543 123466799999999999999887632111100 00 111112222222111
Q ss_pred hCCCCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHHh-hCCC
Q 043779 238 SGGNVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVASI-VGTL 311 (581)
Q Consensus 238 l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~ 311 (581)
.......-..+++.+..... ..+++=++|+|+++..+....+.+...+....+++.+|++|.+. .+... .+..
T Consensus 80 -~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 80 -EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred -ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 00001112344444322221 12556688899999888888899999998777777777777644 44433 3445
Q ss_pred CeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHH
Q 043779 312 PVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 312 ~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai 361 (581)
..+.+.+++.++..+.+...... .. ..+...+..++|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~----~~----~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSA----EI----SEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhcc----Ch----HHHHHHHHHcCCCHHHH
Confidence 68999999999999998876421 11 22566788999999744
No 131
>PRK10536 hypothetical protein; Provisional
Probab=97.74 E-value=0.00064 Score=64.68 Aligned_cols=133 Identities=15% Similarity=0.209 Sum_probs=74.5
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEe----cCC-----CcH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFV----FED-----FNV 227 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v----~~~-----~~~ 227 (581)
..+.++......+..++.. ..++.+.|++|+|||+||..+..+.-..+.|...+...- ++. -+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~-------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES-------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 3466788888888888863 238899999999999999998774322344443332211 110 011
Q ss_pred hH----HHHHHHHhhCCCCCCcCCHHHHHHHH-----------HHHhcCcce---EEEEecccccchhhHHHHhhhcCCC
Q 043779 228 RR----LMTDIITSSGGNVSEAWNLDLLQRRL-----------KDMLDGKRY---LLVLDDVWNEDQEKWDQLKCTLTCG 289 (581)
Q Consensus 228 ~~----l~~~il~~l~~~~~~~~~~~~l~~~l-----------~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~~ 289 (581)
.+ .+.-+...+..-. ..+.+...+ -.+++|..+ +||+|++.+.+......+. ...
T Consensus 128 ~eK~~p~~~pi~D~L~~~~----~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~ 200 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRL----GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRL 200 (262)
T ss_pred HHHHHHHHHHHHHHHHHHh----ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhc
Confidence 11 1111111111000 011111111 135566554 9999999877665544444 444
Q ss_pred CCCcEEEEecCchh
Q 043779 290 SKGSSVVVTTRLAK 303 (581)
Q Consensus 290 ~~gs~iivTtr~~~ 303 (581)
+.+|++|+|--..+
T Consensus 201 g~~sk~v~~GD~~Q 214 (262)
T PRK10536 201 GENVTVIVNGDITQ 214 (262)
T ss_pred CCCCEEEEeCChhh
Confidence 58899999876443
No 132
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.73 E-value=0.00049 Score=78.24 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=76.6
Q ss_pred CccccchhhHHHHHHHHhcCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
..++|.+..++.+...+..... ......++.++|++|+|||+||+.+.+. ....-...+.+..+.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hh---
Confidence 4588999999999888864321 1112357889999999999999999863 211111223333332111 11
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHHHhc-CcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecC
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKDMLD-GKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTR 300 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 300 (581)
....+.+..+.....+. ...+.+.++ ...-+|+|||+...+...++.+...+..+. ..+.||+||.
T Consensus 642 -~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 642 -SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred -hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 11222222222111111 011222222 233699999998878888888887775431 2234788887
Q ss_pred c
Q 043779 301 L 301 (581)
Q Consensus 301 ~ 301 (581)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 133
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.73 E-value=0.00047 Score=78.63 Aligned_cols=135 Identities=18% Similarity=0.255 Sum_probs=79.0
Q ss_pred CccccchhhHHHHHHHHhcCcCC----CCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAG----SDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
..++|.+..++.+.+.+.....+ .....++.++|++|+|||++|+.+... ....-...+.++.+.-.. ....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~-~~~~- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYME-KHSV- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcc-cchH-
Confidence 45899999999999988753211 112456789999999999999999873 221112223333332211 1111
Q ss_pred HHHHhhCCCCCCc---CCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEe
Q 043779 233 DIITSSGGNVSEA---WNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVT 298 (581)
Q Consensus 233 ~il~~l~~~~~~~---~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 298 (581)
..+.+..+.. .....+...++. ....+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 641 ---~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ---HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1111222211 111223333322 233599999999888888888888775441 33458888
Q ss_pred cCc
Q 043779 299 TRL 301 (581)
Q Consensus 299 tr~ 301 (581)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 874
No 134
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00015 Score=76.00 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=112.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
++++|-+.-...|...+.... -...-...|+-|+||||+|+.++.-.--.. | ....+.+.=...+.|..
T Consensus 16 ~evvGQe~v~~~L~nal~~~r----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 357999999999999887642 223345799999999999998876211110 0 00111111111112211
Q ss_pred h--------hCCCCCCcCCHHHHHHHHHHHh-cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hhHHH
Q 043779 237 S--------SGGNVSEAWNLDLLQRRLKDML-DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AKVAS 306 (581)
Q Consensus 237 ~--------l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~ 306 (581)
. -.......++..++.+.+...- .++.=+.|+|+|+-.+...|+.+...+.......+.|+.|.+ ..+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 1 0001111222222222222211 245558999999988889999998888866666665555553 44433
Q ss_pred -hhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCch
Q 043779 307 -IVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPL 359 (581)
Q Consensus 307 -~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PL 359 (581)
.++....|.++.++.++....+...+........ .+...-|++..+|...
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 3455678999999999998888887754443222 2556677777777554
No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.66 E-value=0.0012 Score=64.37 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=58.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHH------------HhhCCC---CCCcCCHH
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDII------------TSSGGN---VSEAWNLD 249 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il------------~~l~~~---~~~~~~~~ 249 (581)
-|.+.|++|+|||+||+.+.. ..... .+.+++....+..+++.... ...... ....+...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCc
Confidence 455899999999999999986 22222 23455555544444432211 000000 00000000
Q ss_pred HHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCC----------------CCCcEEEEecCch
Q 043779 250 LLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCG----------------SKGSSVVVTTRLA 302 (581)
Q Consensus 250 ~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iivTtr~~ 302 (581)
.+..... +...+++|++...+...+..|...+..+ .++.+||+|+...
T Consensus 98 ----~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 98 ----RLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred ----hHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 1111111 3468999999877777777676665321 1356888888843
No 136
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.003 Score=63.70 Aligned_cols=178 Identities=13% Similarity=0.050 Sum_probs=106.5
Q ss_pred hHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc--------CCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 165 DKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK--------RHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.-+++...+..+ .-...+.+.|+.|+||+++|..+..-.--. +.-+.+.++..+..+|+..+.
T Consensus 10 ~~~~l~~~~~~~----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~----- 80 (334)
T PRK07993 10 DYEQLVGSYQAG----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT----- 80 (334)
T ss_pred HHHHHHHHHHcC----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-----
Confidence 345666666543 234567799999999999999876531110 000111122222223322110
Q ss_pred hhCCCCC-CcCCHHHHHHHHHHHh----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hhHHHh-hC
Q 043779 237 SSGGNVS-EAWNLDLLQRRLKDML----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AKVASI-VG 309 (581)
Q Consensus 237 ~l~~~~~-~~~~~~~l~~~l~~~l----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~ 309 (581)
.... ..-..+++.+.....- .+++=++|+|+++..+....+.+...+.....++.+|++|.+ ..+... .+
T Consensus 81 ---p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 81 ---PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred ---cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000 1123444444332221 256679999999888888889999888877777776666664 444433 34
Q ss_pred CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 310 TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 310 ~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
....+.+.+++.+++.+.+..... .++ +.+..++..++|.|..+.
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~-----~~~---~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREVT-----MSQ---DALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHccC-----CCH---HHHHHHHHHcCCCHHHHH
Confidence 455789999999999988875421 111 336788999999997543
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=0.00099 Score=74.87 Aligned_cols=132 Identities=15% Similarity=0.252 Sum_probs=76.6
Q ss_pred CccccchhhHHHHHHHHhcCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
..++|.+..++.+...+..... ......++.++|++|+|||+||+.++.. .. ...+.++.+.-.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l~---~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--LG---VHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--hc---CCeEEEeCchhhhccc---
Confidence 3578988888888888764211 1123446789999999999999999873 22 2233444333211111
Q ss_pred HHHHhhCCCCCC---cCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEe
Q 043779 233 DIITSSGGNVSE---AWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVT 298 (581)
Q Consensus 233 ~il~~l~~~~~~---~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 298 (581)
+...+ +..+. ......+.+.++. ...-+++||+++..+...++.+...+..+. ..+.||+|
T Consensus 526 -~~~li-g~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 526 -VSRLI-GAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred -HHHHh-cCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 11111 11111 1112223333321 334699999998888888888888776431 23457788
Q ss_pred cCc
Q 043779 299 TRL 301 (581)
Q Consensus 299 tr~ 301 (581)
|..
T Consensus 601 sn~ 603 (731)
T TIGR02639 601 SNA 603 (731)
T ss_pred CCc
Confidence 753
No 138
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0012 Score=64.71 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=103.3
Q ss_pred ccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 158 EVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
++=|-++++++|.+.+.-+-. |-+.++-|.++|+||.|||-||++|++ +....| +.+..+ +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----E 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----E 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----H
Confidence 355788888888887643321 234566778999999999999999999 454444 333221 2
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc-CcceEEEEeccccc-----------chh---hHHHHhhhcCC--CCCC
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLD-GKRYLLVLDDVWNE-----------DQE---KWDQLKCTLTC--GSKG 292 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~g 292 (581)
+.+..+ + +...+.+.+.++-+ ..+..|++|.+... +.+ ..-+|...+.. ....
T Consensus 221 lVqKYi----G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 LVQKYI----G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHHHh----c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 222221 1 12244555555544 46899999998321 111 12223333432 2356
Q ss_pred cEEEEecCchhHHHhh----C-CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 293 SSVVVTTRLAKVASIV----G-TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 293 s~iivTtr~~~v~~~~----~-~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
.|||..|...++.... + -...+++..-+.+.-.++|+-++..-.....-++ ..|++.|.|.-
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 6999998866654331 1 2346777766666667788877755544343343 45566666654
No 139
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0028 Score=63.81 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=66.6
Q ss_pred CcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hhHHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCC
Q 043779 261 GKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AKVASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTE 338 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~ 338 (581)
++.-++|+|+++..+...++.+...+....+++.+|++|.+ ..+... .+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45568899999999999999999999877777766655554 444433 3445689999999999999998752 1
Q ss_pred CCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 339 PPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 339 ~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
.. ...++..++|.|+.+..+
T Consensus 206 ~~------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch------HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999765443
No 140
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.59 E-value=0.0027 Score=67.52 Aligned_cols=207 Identities=16% Similarity=0.113 Sum_probs=124.3
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcc---c---cCCcCceeEEEecCCCcHhH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDR---I---KRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~---~~~F~~~~wv~v~~~~~~~~ 229 (581)
+..+-+|+.|..+|.+++...-...+..+.+-|.|-+|+|||..+..|.+... . ...|++ +.|+...-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHH
Confidence 34466999999999988865433223345889999999999999999988532 1 223332 2334344456889
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc-----CcceEEEEecccccchhhHHHHhhhcCC-CCCCcEEEEecC--c
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLD-----GKRYLLVLDDVWNEDQEKWDQLKCTLTC-GSKGSSVVVTTR--L 301 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr--~ 301 (581)
++..|...+.+... ......+.|..+.. .+.+++++|++...-...-+.+...|.+ ..++|+++|.+= .
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 99999999876543 22233334444332 3568888888733211122345555553 346777666543 1
Q ss_pred hhH---------HHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhh
Q 043779 302 AKV---------ASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSL 367 (581)
Q Consensus 302 ~~v---------~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~ 367 (581)
.+. +..++- ..+.+.|-+.++-.++...+..+...-.+...+=++++++.-.|-.-.|+.+.-++
T Consensus 551 mdlPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccCHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 222 222221 25677888888888888877765543333344445666666666656666555444
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.58 E-value=0.00034 Score=79.23 Aligned_cols=135 Identities=17% Similarity=0.202 Sum_probs=78.8
Q ss_pred CccccchhhHHHHHHHHhcCc----CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDV----AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
..++|.+..++.+.+.+.... .......++.++|++|+|||.||+.+... .-+.....+-++.+.-... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 468999999999998886431 11234557889999999999999988763 2111111121222111100 0
Q ss_pred HHHHhhCCCCCCc---CCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEe
Q 043779 233 DIITSSGGNVSEA---WNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVT 298 (581)
Q Consensus 233 ~il~~l~~~~~~~---~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 298 (581)
-...+.+..+.. .....+...+++ ...-+|+||++...++..++.+...+..+. ..+-||+|
T Consensus 640 -~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 -TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred -hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111222222211 112233333332 455799999998888888888887776543 45678888
Q ss_pred cCc
Q 043779 299 TRL 301 (581)
Q Consensus 299 tr~ 301 (581)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 773
No 142
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0011 Score=70.57 Aligned_cols=165 Identities=21% Similarity=0.218 Sum_probs=92.1
Q ss_pred CCccccchhhHHHHHHHHhcCcC-CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVA-GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 234 (581)
+.+.+|-++-+++|++.|.-..- ..-.-++++++||||||||+|++.++. .....|-. ++++.--|..++-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEIRGH- 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEIRGH- 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHhccc-
Confidence 55679999999999998853211 112347999999999999999999998 55555522 233333333222100
Q ss_pred HHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccch----hhHHHHhhhcCCC-C------------CCc--EE
Q 043779 235 ITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ----EKWDQLKCTLTCG-S------------KGS--SV 295 (581)
Q Consensus 235 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~-~------------~gs--~i 295 (581)
...--++. +..+.+.+++. +-++=|++||.+..... +.-..+...|.+. + .=| ..
T Consensus 396 ----RRTYIGam-PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 396 ----RRTYIGAM-PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ----cccccccC-ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 00000111 22333333332 34667899999853221 1122333333211 1 112 23
Q ss_pred EEecCchh-H-HHhhCCCCeeeCCCCChHhHHHHHHhhh
Q 043779 296 VVTTRLAK-V-ASIVGTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 296 ivTtr~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
|.|+.+-+ + +..+....++++.+-+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 33444333 2 2234455689999999999888877765
No 143
>PRK12377 putative replication protein; Provisional
Probab=97.54 E-value=0.0002 Score=68.64 Aligned_cols=100 Identities=25% Similarity=0.183 Sum_probs=54.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
..+.++|++|+|||+||..+++.. ......++++++. +++..+-...... .... ..+.. + .+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~---~~l~~-l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDNG----QSGE---KFLQE-L-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhcc----chHH---HHHHH-h-cCC
Confidence 567899999999999999999843 3333334555442 3444443332111 1111 12222 2 345
Q ss_pred eEEEEecccccchhhHH--HHhhhcCCC-CCCcEEEEecC
Q 043779 264 YLLVLDDVWNEDQEKWD--QLKCTLTCG-SKGSSVVVTTR 300 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr 300 (581)
-||||||+.......|. .+...+... ...--+||||.
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 69999999544333343 333333311 22334788877
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00033 Score=76.42 Aligned_cols=136 Identities=18% Similarity=0.293 Sum_probs=83.7
Q ss_pred CccccchhhHHHHHHHHhcCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
..++|-++.++.+.+.+..... ......+....|+.|||||-||+.+... .-+.=+..+-+..|. |..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSE-y~Ek---- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSE-YMEK---- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHH-HHHH----
Confidence 4579999999999888865432 1234567778999999999999998762 111112222222221 1111
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHHHhcCcce-EEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecC
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKDMLDGKRY-LLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTR 300 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 300 (581)
.-+..|-+.++.-...++ --.|-+..+.++| +|.||++...+++.++.+...|.++. ..+-||+||.
T Consensus 564 HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 122333344443222222 2234455566777 88899998888888999988887553 3456788887
No 145
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.51 E-value=0.0048 Score=62.72 Aligned_cols=203 Identities=16% Similarity=0.157 Sum_probs=118.5
Q ss_pred chhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHH-HHHhcCccccCCcCceeEEEecCCC---cHhHHHHHHHHh
Q 043779 162 REEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLA-QLVFNDDRIKRHFEFRIWVFVFEDF---NVRRLMTDIITS 237 (581)
Q Consensus 162 R~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~wv~v~~~~---~~~~l~~~il~~ 237 (581)
|.+..++|..||.+.. -.+|.|.||-|+||+.|+ .++..+.+ .+..+.+.+-. +-..++..++.+
T Consensus 1 R~e~~~~L~~wL~e~~-----~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~q 69 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP-----NTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQ 69 (431)
T ss_pred CchHHHHHHHHHhcCC-----CeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHh
Confidence 5677899999998753 358889999999999999 77776422 24455543221 122333333333
Q ss_pred hC-----------------------CCCCC--cCCHHHHHHHH-------HH-------------------Hhc---Ccc
Q 043779 238 SG-----------------------GNVSE--AWNLDLLQRRL-------KD-------------------MLD---GKR 263 (581)
Q Consensus 238 l~-----------------------~~~~~--~~~~~~l~~~l-------~~-------------------~l~---~k~ 263 (581)
+| +...+ .....++...+ ++ ++. .++
T Consensus 70 vGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~ 149 (431)
T PF10443_consen 70 VGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERR 149 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccC
Confidence 32 22111 11122222222 11 111 125
Q ss_pred eEEEEecccccc---hhhHHHHhhhcC--CCCCCcEEEEecCchhHHHh----hC--CCCeeeCCCCChHhHHHHHHhhh
Q 043779 264 YLLVLDDVWNED---QEKWDQLKCTLT--CGSKGSSVVVTTRLAKVASI----VG--TLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 264 ~LlVlDdv~~~~---~~~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~----~~--~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
=+||+|++-... ...|+.+...-. ...+-.+||++|-+...... +. ....+.|...+.+.|..+..++.
T Consensus 150 PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 150 PVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred CEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 689999984321 122233222111 12344578888776554433 32 23478899999999999999887
Q ss_pred cCCCCC-------------CC----chHHHHHHHHHHHcCCCchHHHHhhhhhccCCCHH
Q 043779 333 FGNDTE-------------PP----MNILAIAKEIVKKCKGVPLAAKTLGSLMHFKSNEN 375 (581)
Q Consensus 333 ~~~~~~-------------~~----~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~ 375 (581)
...... .. .....-....+...||=-.-+..+++.++...++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 543110 00 12334466788899999999999999998876654
No 146
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0005 Score=68.95 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=87.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccC---------CcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKR---------HFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQ 252 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~ 252 (581)
-...+.++|+.|+||||+|..+..-.--.. .-..+.++..+..+|...+.-.--..-.+........+++.
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 345677999999999999999876311000 00001122222222222110000000000000112344444
Q ss_pred HHHHHHh----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHHhh-CCCCeeeCCCCChHhHHH
Q 043779 253 RRLKDML----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVASIV-GTLPVYRLSDLSEDDCWL 326 (581)
Q Consensus 253 ~~l~~~l----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~ 326 (581)
+.....- .+++-++|+|++...+...-+.+...+.....++.+|++|.+. .+...+ .....+.+.+++.+++.+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~ 179 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHH
Confidence 4332221 1344456679998777777777777776544556666666654 344332 334588999999999998
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchH
Q 043779 327 LFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLA 360 (581)
Q Consensus 327 lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLa 360 (581)
.+.... . ... . ..+..++|.|+.
T Consensus 180 ~L~~~~----~--~~~----~-~~l~~~~g~p~~ 202 (325)
T PRK08699 180 YLRERG----V--AEP----E-ERLAFHSGAPLF 202 (325)
T ss_pred HHHhcC----C--CcH----H-HHHHHhCCChhh
Confidence 887642 1 111 1 123568899964
No 147
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.47 E-value=0.0022 Score=66.44 Aligned_cols=147 Identities=21% Similarity=0.221 Sum_probs=85.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcce
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRY 264 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~ 264 (581)
++.|.|+-++||||+++.+... ..+. .++++.-+......-+. +....+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~-----------------d~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELL-----------------DLLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHH-----------------HHHHHHHHhhccCCc
Confidence 8999999999999999777662 2222 44444332211111111 111111111112778
Q ss_pred EEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHH-----hh-CCCCeeeCCCCChHhHHHHHHhhhcCCCCC
Q 043779 265 LLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVAS-----IV-GTLPVYRLSDLSEDDCWLLFKQRAFGNDTE 338 (581)
Q Consensus 265 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-----~~-~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~ 338 (581)
+|+||.|.. ...|......+.+.++. +|++|+-+..... .. +....+++.|||..|...+.....
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~------ 167 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI------ 167 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc------
Confidence 999999954 46788877777766655 8888887554432 22 344589999999998876543000
Q ss_pred CCchHHHHHHHHHHHcCCCchHHHH
Q 043779 339 PPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 339 ~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
..... ...-+-.-.+||.|-++..
T Consensus 168 ~~~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 EPSKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred chhHH-HHHHHHHHHhCCCcHHHhC
Confidence 00011 1122233457888887754
No 148
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.46 E-value=0.0015 Score=63.53 Aligned_cols=172 Identities=18% Similarity=0.219 Sum_probs=96.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC-ccccCCcCceeEEEecCCCcH-hHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND-DRIKRHFEFRIWVFVFEDFNV-RRLMTDI 234 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~wv~v~~~~~~-~~l~~~i 234 (581)
..++|-.++..++-.|+.+...-+ ....+.|+|+.|.|||+|......+ .++.++| +-|......-. +-.+..|
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~g-EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHG-ESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhc-CCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 457899999999999987643211 2345669999999999999888876 2233333 33333333222 2234444
Q ss_pred HHhhC----CCCCCcCCHHHHHHHHHHHhc------CcceEEEEecccccchhh-HHHHhhhcC----CCCCCcEEEEec
Q 043779 235 ITSSG----GNVSEAWNLDLLQRRLKDMLD------GKRYLLVLDDVWNEDQEK-WDQLKCTLT----CGSKGSSVVVTT 299 (581)
Q Consensus 235 l~~l~----~~~~~~~~~~~l~~~l~~~l~------~k~~LlVlDdv~~~~~~~-~~~l~~~l~----~~~~gs~iivTt 299 (581)
..++. .......+..+...++-..|+ +-++++|+|.++-.-... -..+...|. ...+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 44443 222122222232333333332 346889998874322111 111222222 234566788999
Q ss_pred Cch-------hHHHhhCCCCeeeCCCCChHhHHHHHHhhh
Q 043779 300 RLA-------KVASIVGTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 300 r~~-------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
|-. .|-+.+....++-+++++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 933 223333333467777888999999988876
No 149
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.42 E-value=0.0015 Score=73.59 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=93.7
Q ss_pred CccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
+++.|.+..++++.+++.... .+-...+.+.++|++|+|||+||+.+++. ....| +.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----
Confidence 347899999999988764321 11123456789999999999999999883 22222 222211
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc-----------hhhHHHHhhhcCCC-CCCcEEE
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED-----------QEKWDQLKCTLTCG-SKGSSVV 296 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~ii 296 (581)
.+ ..... ......+...+.......+.+|+||++.... ......+...+... ..+..++
T Consensus 247 ~i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EI----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HH----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 11 11100 0112223333333444567899999984311 11123344333321 2233344
Q ss_pred E-ecCchh-HHHhhC----CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 297 V-TTRLAK-VASIVG----TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 297 v-Ttr~~~-v~~~~~----~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
| ||.... +...+. -...+.+...+.++-.+++............ .....+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCC
Confidence 4 554332 211111 1236778888888888888865432221111 12566777777764
No 150
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.41 E-value=0.00025 Score=67.13 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=28.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEe
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFV 221 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 221 (581)
-++|+|.+|+|||||+..+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 456999999999999999987 46678877766644
No 151
>PRK08181 transposase; Validated
Probab=97.40 E-value=0.00036 Score=67.84 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=53.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcce
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRY 264 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~ 264 (581)
-+.++|++|+|||.||..+.+. .......+.|+. ..+++..+..... ....... +..+ .+.-
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~---l~~l--~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVARR-----ELQLESA---IAKL--DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHHh-----CCcHHHH---HHHH--hcCC
Confidence 4789999999999999999873 222223344544 2344444433211 1122222 2222 2345
Q ss_pred EEEEecccccchhhH--HHHhhhcCCCCCCcEEEEecCc
Q 043779 265 LLVLDDVWNEDQEKW--DQLKCTLTCGSKGSSVVVTTRL 301 (581)
Q Consensus 265 LlVlDdv~~~~~~~~--~~l~~~l~~~~~gs~iivTtr~ 301 (581)
||||||+.......| ..+...+.....+..+||||+.
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 999999964432222 2233333321112368888883
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.40 E-value=0.001 Score=75.68 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=77.0
Q ss_pred CccccchhhHHHHHHHHhcCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
..++|-+..++.+...+..... .......+.++|++|+|||+||+.+.+. .-+.-...+-+..+.-.+...+ .
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-S 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-H
Confidence 4688999999999888763221 1122345678999999999999999862 2111112222333322111111 1
Q ss_pred HHHHhhCCCCCC---cCCHHHHHHHHHHHhcCcc-eEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEE
Q 043779 233 DIITSSGGNVSE---AWNLDLLQRRLKDMLDGKR-YLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVV 297 (581)
Q Consensus 233 ~il~~l~~~~~~---~~~~~~l~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiv 297 (581)
. +.+..+. ......+ .+.++.++ .+++||++...+...++.+...+..+. ..+-+|+
T Consensus 586 ~----l~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 586 K----LIGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred H----hcCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 1 1111111 1112223 33333344 589999998888888888888776541 3556777
Q ss_pred ecCc
Q 043779 298 TTRL 301 (581)
Q Consensus 298 Ttr~ 301 (581)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 8774
No 153
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.40 E-value=0.0012 Score=71.10 Aligned_cols=170 Identities=17% Similarity=0.167 Sum_probs=89.3
Q ss_pred ccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc--cCCcC-ceeEEEecC---CCcHhHHH
Q 043779 158 EVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI--KRHFE-FRIWVFVFE---DFNVRRLM 231 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~F~-~~~wv~v~~---~~~~~~l~ 231 (581)
+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++.... ...|. ..-|+.+.- .++...+.
T Consensus 66 ~iiGqs~~i~~l~~al~~~-----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~ 140 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP-----NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIA 140 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccc
Confidence 5899999999998876542 2345679999999999999999763211 12232 123444331 11221121
Q ss_pred HHHHHhhCCCCC------CcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCC----------------
Q 043779 232 TDIITSSGGNVS------EAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCG---------------- 289 (581)
Q Consensus 232 ~~il~~l~~~~~------~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~---------------- 289 (581)
..++........ ......+. +....-+...=.|+||++...+....+.|...+...
T Consensus 141 ~~li~~~~~p~~~~~~~~g~~g~~~~--~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~ 218 (531)
T TIGR02902 141 DPLIGSVHDPIYQGAGPLGIAGIPQP--KPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNI 218 (531)
T ss_pred hhhcCCcccchhccccccccCCcccc--cCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCccc
Confidence 111111000000 00000000 000000123458999999887777777766544321
Q ss_pred ------------CCCcEEEEe-cCchh-HHHh-hCCCCeeeCCCCChHhHHHHHHhhhcC
Q 043779 290 ------------SKGSSVVVT-TRLAK-VASI-VGTLPVYRLSDLSEDDCWLLFKQRAFG 334 (581)
Q Consensus 290 ------------~~gs~iivT-tr~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~ 334 (581)
....++|.+ |++.. +... ......+.+.+++.+|..+++++.+-.
T Consensus 219 ~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 219 PSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred ccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH
Confidence 112366654 44332 1111 122346889999999999999887743
No 154
>PRK04132 replication factor C small subunit; Provisional
Probab=97.38 E-value=0.0045 Score=69.23 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=98.3
Q ss_pred EEe--cCCCcHHHHHHHHhcCccccCCcCc-eeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcce
Q 043779 188 IVG--MGGLGKTTLAQLVFNDDRIKRHFEF-RIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRY 264 (581)
Q Consensus 188 I~G--~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~ 264 (581)
+.| |.++||||+|..++++. ..+.+.. .+-++.++..+.. ..++++..+....+. -..+.-
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~K 632 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFK 632 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCE
Confidence 346 88999999999999842 1122222 3445555443333 222333222111000 012457
Q ss_pred EEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHHh-hCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCch
Q 043779 265 LLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVASI-VGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMN 342 (581)
Q Consensus 265 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~ 342 (581)
++|+|+++..+....+.|+..+......+++|++|.+. .+... .+....+++.+++.++....+...+...+...+
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~-- 710 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT-- 710 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC--
Confidence 99999999888888888888888666667777766643 33333 233568999999999998888766543222112
Q ss_pred HHHHHHHHHHHcCCCchHHHHh
Q 043779 343 ILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 343 l~~~~~~I~~~~~G~PLai~~~ 364 (581)
.+....|++.|+|.+..+..+
T Consensus 711 -~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 711 -EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred -HHHHHHHHHHcCCCHHHHHHH
Confidence 257889999999998665443
No 155
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.37 E-value=0.00091 Score=64.02 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=55.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGK 262 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 262 (581)
...+.++|.+|+|||+||..+++... ..-..+++++ ..+++..+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 34678999999999999999998532 2223344443 34444444333311 1112222 222233 3
Q ss_pred ceEEEEecccccchhhHHH--HhhhcCC-CCCCcEEEEecC
Q 043779 263 RYLLVLDDVWNEDQEKWDQ--LKCTLTC-GSKGSSVVVTTR 300 (581)
Q Consensus 263 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr 300 (581)
.=||||||+.......|.. +...+.. ....-.+||||.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 4588999997655555653 3333321 112345777776
No 156
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0029 Score=61.08 Aligned_cols=80 Identities=14% Similarity=0.250 Sum_probs=50.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCcc--ccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDR--IKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
-++|.++||||.|||+|++.+++... ..+.|....-+.+. ...++.....+-+ .....+-+++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsESg------KlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSESG------KLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhhhh------hHHHHHHHHHHHHHh
Confidence 47889999999999999999999743 34555555555443 2334444333221 134455666677776
Q ss_pred Ccc--eEEEEeccc
Q 043779 261 GKR--YLLVLDDVW 272 (581)
Q Consensus 261 ~k~--~LlVlDdv~ 272 (581)
++. +.+.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 554 344578883
No 157
>PRK06526 transposase; Provisional
Probab=97.36 E-value=0.00029 Score=68.08 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=51.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
.-+.|+|++|+|||+||..+..... ...+. +.|+ +..+++..+..... . ..+...+..+ .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~----~----~~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH----A----GRLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh----c----CcHHHHHHHh--ccC
Confidence 3578999999999999999987422 22222 2332 23344444432211 0 1122223332 234
Q ss_pred eEEEEecccccchhhH--HHHhhhcCC-CCCCcEEEEecCc
Q 043779 264 YLLVLDDVWNEDQEKW--DQLKCTLTC-GSKGSSVVVTTRL 301 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~ 301 (581)
-|||+||+.......+ +.+...+.. ...+ .+|+||..
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~ 200 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNK 200 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCC
Confidence 6999999964322222 223333321 1223 48888873
No 158
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.34 E-value=0.00012 Score=63.95 Aligned_cols=89 Identities=28% Similarity=0.281 Sum_probs=48.5
Q ss_pred EEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceE
Q 043779 186 YPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYL 265 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~L 265 (581)
|.|+|++|+|||+||+.++. .... ...-+.++...+..+++...--. .+.. ......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~--~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQF--EFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTTT--CEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-cccc--ccccccccccc-----cceeE
Confidence 56999999999999999997 3311 12345666666666555322111 0100 00000000000 17899
Q ss_pred EEEecccccchhhHHHHhhhcC
Q 043779 266 LVLDDVWNEDQEKWDQLKCTLT 287 (581)
Q Consensus 266 lVlDdv~~~~~~~~~~l~~~l~ 287 (581)
+|||++...+...+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999997666666666655544
No 159
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.34 E-value=0.0001 Score=49.89 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=30.0
Q ss_pred CccccccCC--CCCCcccCCccccceEeeCCCCcccC
Q 043779 547 TYPIILTNS--GECPSDISKFHRLRALEFIDPRLTKF 581 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~~i~~l 581 (581)
|++|++++. +.+|..|++|.+|++|+|++|.|+++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 678888864 78999999999999999999999864
No 160
>PRK06921 hypothetical protein; Provisional
Probab=97.34 E-value=0.00084 Score=65.46 Aligned_cols=98 Identities=19% Similarity=0.311 Sum_probs=52.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCC-cCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRH-FEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
...+.++|.+|+|||+||..+++. .... -..++|++. .+++..+...+ +.....+.. + .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~-~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNR-M-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH------HHHHHHHHHHH----------HHHHHHHHH-h-c
Confidence 356789999999999999999984 3322 233456553 22333332211 111222222 2 2
Q ss_pred cceEEEEecccc-----cchhhHHH--HhhhcCC-CCCCcEEEEecC
Q 043779 262 KRYLLVLDDVWN-----EDQEKWDQ--LKCTLTC-GSKGSSVVVTTR 300 (581)
Q Consensus 262 k~~LlVlDdv~~-----~~~~~~~~--l~~~l~~-~~~gs~iivTtr 300 (581)
+-=||||||+.. .....|.. +...+.. ...+..+||||.
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn 223 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSE 223 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 346999999932 22233432 3333321 112445888887
No 161
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.002 Score=65.23 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=85.1
Q ss_pred ccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC-------------------CcCceeE
Q 043779 158 EVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR-------------------HFEFRIW 218 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 218 (581)
.++|-+....++..+...... ....+.++|++|+||||+|..+.+..--.. ..+....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~---~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR---LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC---CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 456777888888888875321 233588999999999999999987421111 0111222
Q ss_pred EEecCCCc---HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEE
Q 043779 219 VFVFEDFN---VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSV 295 (581)
Q Consensus 219 v~v~~~~~---~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 295 (581)
++-+.... ..+..+++........ ..++.-++++|++.......-+.+...+......+.+
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 22222211 1111112211111100 0256779999999877777777788888777778888
Q ss_pred EEecCch-hHHHhh-CCCCeeeCCCCChHhH
Q 043779 296 VVTTRLA-KVASIV-GTLPVYRLSDLSEDDC 324 (581)
Q Consensus 296 ivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~ 324 (581)
|++|... .+...+ .....+++.+.+..+.
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCchHHHH
Confidence 8888733 333322 2334677777444333
No 162
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.33 E-value=0.00086 Score=66.70 Aligned_cols=121 Identities=15% Similarity=0.240 Sum_probs=68.4
Q ss_pred cchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCC
Q 043779 161 GREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGG 240 (581)
Q Consensus 161 GR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~ 240 (581)
++........+++..-..+ ...+-+.|+|..|+|||.||..+++... ...+. +.++++ ..++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~-~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG-EKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc-CCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHhc
Confidence 4555555566666543221 1335678999999999999999999533 22232 345444 2444444443321
Q ss_pred CCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHH--Hhhhc-CCC-CCCcEEEEecC
Q 043779 241 NVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQ--LKCTL-TCG-SKGSSVVVTTR 300 (581)
Q Consensus 241 ~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr 300 (581)
. +. ...+.. + .+-=||||||+.......|.. +...+ ... ..+-.+|+||.
T Consensus 206 ~-----~~---~~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 G-----SV---KEKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred C-----cH---HHHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 12 222332 2 245699999997665566753 43333 211 24556888887
No 163
>PRK08118 topology modulation protein; Reviewed
Probab=97.32 E-value=0.00012 Score=66.09 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=26.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCcccc-CCcCceeE
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIK-RHFEFRIW 218 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 218 (581)
-|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47899999999999999999854333 34565555
No 164
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.30 E-value=0.01 Score=60.11 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcc
Q 043779 163 EEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDR 208 (581)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 208 (581)
+.-.+.|.+.+..... ....+|+|.|.=|+||||+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~--~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS--DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred hHHHHHHHHHHhccCC--CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445667777765432 4678999999999999999999988433
No 165
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0076 Score=62.04 Aligned_cols=150 Identities=18% Similarity=0.188 Sum_probs=84.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
....+.+.|++|+|||+||..++. ...|+.+--++-..-. ...+......+........+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~mi---------------G~sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMI---------------GLSESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHcc---------------CccHHHHHHHHHHHHHHhhcC
Confidence 566677999999999999999986 5678765433211110 011111122233333444455
Q ss_pred cceEEEEeccccc----------chhhHHHHhhhcC---CCCCCcEEEEecCchhHHHhhCCC----CeeeCCCCCh-Hh
Q 043779 262 KRYLLVLDDVWNE----------DQEKWDQLKCTLT---CGSKGSSVVVTTRLAKVASIVGTL----PVYRLSDLSE-DD 323 (581)
Q Consensus 262 k~~LlVlDdv~~~----------~~~~~~~l~~~l~---~~~~gs~iivTtr~~~v~~~~~~~----~~~~l~~L~~-~e 323 (581)
.--.||+||+..- +......|.-.+. +.+..--|+-||....+...|+-. ..|.++.++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 6679999999321 0111223333333 222333455567777787776542 3788999987 77
Q ss_pred HHHHHHhhhcCCCCCCCchHHHHHHHHHHHc
Q 043779 324 CWLLFKQRAFGNDTEPPMNILAIAKEIVKKC 354 (581)
Q Consensus 324 ~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~ 354 (581)
..+.++..-. -.+.+.+.++.+...+|
T Consensus 678 ~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 678 LLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 7777766431 12233445566666665
No 166
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.26 E-value=0.005 Score=69.47 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.++.|.+..++.|.+.+..... +-...+-+.++|++|+|||+||+.+++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 4467888888777776542110 1123455789999999999999999983 22222 233211
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc--------c----hhhHHHHhhhcCC--CCCCcE
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE--------D----QEKWDQLKCTLTC--GSKGSS 294 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~--------~----~~~~~~l~~~l~~--~~~gs~ 294 (581)
+ ++....+ .....+.......-...+.+|+||++... . ......+...+.. ...+..
T Consensus 522 ~----l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 E----ILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred H----HhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 1111111 11222223333333456799999998421 0 0112233333332 224456
Q ss_pred EEEecCchhHHHh-h----CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 295 VVVTTRLAKVASI-V----GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 295 iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
||.||...+.... + .-...+.+...+.++-.++|+.+..+.......+ ...+++.|.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 7777765543322 1 1234788888899998999876654332222222 456677777754
No 167
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.24 E-value=0.0065 Score=56.42 Aligned_cols=118 Identities=21% Similarity=0.271 Sum_probs=70.2
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
..++|-+..++.+++--..-..|. ...-|.+||.-|+|||+|++++.+ ......-. -|.|...
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~------------ 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE------------ 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH------------
Confidence 458999999888876543322222 334566999999999999999998 33333322 2222211
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccc-cchhhHHHHhhhcCCC---CCCcEEEEecC
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWN-EDQEKWDQLKCTLTCG---SKGSSVVVTTR 300 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTtr 300 (581)
+..+...+...|+. ..+||+|+.||+.- .+...+..++..+..+ .+...++..|.
T Consensus 123 -------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 123 -------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred -------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 11122233333333 36899999999943 3446677788877633 23334444443
No 168
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.24 E-value=0.0012 Score=61.01 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=63.9
Q ss_pred cchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC----Cc--Hh------
Q 043779 161 GREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED----FN--VR------ 228 (581)
Q Consensus 161 GR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~----~~--~~------ 228 (581)
.+..+....++.|.. ..++.+.|++|.|||.||....-+.-..+.|+..+++.-.-+ .. +-
T Consensus 4 p~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 4 PKNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp --SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 345556667777762 248889999999999999888776555578887776642211 10 00
Q ss_pred ----HHHHHHHHhhCCCCCCcCCHHHHHHHH------HHHhcCc---ceEEEEecccccchhhHHHHhhhcCCCCCCcEE
Q 043779 229 ----RLMTDIITSSGGNVSEAWNLDLLQRRL------KDMLDGK---RYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSV 295 (581)
Q Consensus 229 ----~l~~~il~~l~~~~~~~~~~~~l~~~l------~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 295 (581)
.-+.+.+..+. .....+.+...- -.+++|+ ..++|+|++.+....++..+.. ..+.+|++
T Consensus 77 ~p~~~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~ski 149 (205)
T PF02562_consen 77 EPYLRPIYDALEELF----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKI 149 (205)
T ss_dssp -TTTHHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EE
T ss_pred HHHHHHHHHHHHHHh----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEE
Confidence 11111121111 111222222100 1244553 4699999998877666655544 45688999
Q ss_pred EEecCchhH
Q 043779 296 VVTTRLAKV 304 (581)
Q Consensus 296 ivTtr~~~v 304 (581)
|++--..+.
T Consensus 150 i~~GD~~Q~ 158 (205)
T PF02562_consen 150 IITGDPSQI 158 (205)
T ss_dssp EEEE-----
T ss_pred EEecCceee
Confidence 999764433
No 169
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.24 E-value=0.0016 Score=58.74 Aligned_cols=130 Identities=19% Similarity=0.208 Sum_probs=67.2
Q ss_pred cccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC-CCcHhHHHHHHHHh
Q 043779 159 VYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE-DFNVRRLMTDIITS 237 (581)
Q Consensus 159 ~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~il~~ 237 (581)
++|....+.++.+.+..... .. .-|.|+|..|+||+.+|+.+.+.. .....-|+.+.- ..+...+-..++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~--~~-~pVlI~GE~GtGK~~lA~~IH~~s----~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS--SD-LPVLITGETGTGKELLARAIHNNS----PRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT--ST-S-EEEECSTTSSHHHHHHHHHHCS----TTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC--CC-CCEEEEcCCCCcHHHHHHHHHHhh----hcccCCeEEEehhhhhcchhhhhhhcc
Confidence 46888888888888776543 23 345599999999999999999831 111222333322 22333333344333
Q ss_pred hCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCC------CC-----CCcEEEEecC
Q 043779 238 SGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTC------GS-----KGSSVVVTTR 300 (581)
Q Consensus 238 l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~------~~-----~gs~iivTtr 300 (581)
-.+......... .-.+... ..=-|+||++.......-..|...+.. ++ ...|||.||.
T Consensus 74 ~~~~~~~~~~~~--~G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 74 EKGAFTGARSDK--KGLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTS 142 (168)
T ss_dssp CSSSSTTTSSEB--EHHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEES
T ss_pred cccccccccccc--CCceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecC
Confidence 222111111100 0112221 233688999987766555556555542 11 2568888888
No 170
>PRK09183 transposase/IS protein; Provisional
Probab=97.23 E-value=0.00068 Score=65.93 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 35779999999999999999763
No 171
>PRK04296 thymidine kinase; Provisional
Probab=97.23 E-value=0.0009 Score=61.89 Aligned_cols=113 Identities=14% Similarity=0.002 Sum_probs=61.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCC--cCCHHHHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSE--AWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~--~~~~~~l~~~l~~~l~~ 261 (581)
.++.|+|++|.||||++..+... ...+-..++.+. ..++.......++..++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47789999999999999988873 322322333331 1112222233344454422211 2234455555544 334
Q ss_pred cceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh
Q 043779 262 KRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK 303 (581)
Q Consensus 262 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 303 (581)
+.-+||+|.+...+..+...+...+. ..|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 55699999996543332333333322 35678999988643
No 172
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.22 E-value=0.00044 Score=63.10 Aligned_cols=98 Identities=23% Similarity=0.368 Sum_probs=50.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
.-+.++|++|+|||.||..+.+... ...+ .+.|+. ..+++..+-..- . ....... +..+ . +-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~------~~~L~~~l~~~~----~-~~~~~~~---~~~l-~-~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFIT------ASDLLDELKQSR----S-DGSYEEL---LKRL-K-RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEE------HHHHHHHHHCCH----C-CTTHCHH---HHHH-H-TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEee------cCceeccccccc----c-ccchhhh---cCcc-c-cc
Confidence 4688999999999999999987432 2233 244544 334444443221 1 1122222 2222 2 24
Q ss_pred eEEEEecccccchhhHHH--HhhhcCCC-CCCcEEEEecC
Q 043779 264 YLLVLDDVWNEDQEKWDQ--LKCTLTCG-SKGSSVVVTTR 300 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr 300 (581)
=||||||+.......|.. +...+... .++ .+||||.
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN 148 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSN 148 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEES
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCC
Confidence 588899997654444432 22222211 123 5888887
No 173
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.22 E-value=0.0021 Score=60.73 Aligned_cols=200 Identities=13% Similarity=0.134 Sum_probs=109.3
Q ss_pred cccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcc----ccCCcCceeEEEecCC-CcHhHHHHH
Q 043779 159 VYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDR----IKRHFEFRIWVFVFED-FNVRRLMTD 233 (581)
Q Consensus 159 ~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~F~~~~wv~v~~~-~~~~~l~~~ 233 (581)
+.++++..+.+...... +..+-+.++|++|.||-|.+..+.+..- .+-+-+...|.+-+.. ..+..+-..
T Consensus 15 l~~~~e~~~~Lksl~~~-----~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST-----GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred cccHHHHHHHHHHhccc-----CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 55666666666665542 3567888999999999998876665311 0112223344443322 000000000
Q ss_pred HHHhhCCCCCCcCCHHHHHHHHHHHhc--------Ccce-EEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-h
Q 043779 234 IITSSGGNVSEAWNLDLLQRRLKDMLD--------GKRY-LLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-K 303 (581)
Q Consensus 234 il~~l~~~~~~~~~~~~l~~~l~~~l~--------~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~ 303 (581)
---++.+...+..+..-+++.+++.-+ .+.| ++|+-.+..-..+.-..++..+..-+..+|+|+...+. .
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSR 169 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCccc
Confidence 000001111111222223333333221 2344 56666665545555566777777667788888876532 2
Q ss_pred HHHhh-CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhh
Q 043779 304 VASIV-GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGS 366 (581)
Q Consensus 304 v~~~~-~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~ 366 (581)
+...+ +..-.+++...+++|....++..+-..+-..+ .+++.+|+++++|+-.-...+..
T Consensus 170 iIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 170 IIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred chhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHH
Confidence 22222 22336899999999999999887755544333 38899999999987544433333
No 174
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0084 Score=61.80 Aligned_cols=50 Identities=34% Similarity=0.379 Sum_probs=37.2
Q ss_pred ccccch---hhHHHHHHHHhcCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCc
Q 043779 158 EVYGRE---EDKEKIVERLVKDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDD 207 (581)
Q Consensus 158 ~~vGR~---~~~~~l~~~L~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 207 (581)
++-|-+ .|+++|+++|..+.. |+.-++-|.++|+||.|||-||++++...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345655 577788888876542 33345678899999999999999999843
No 175
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.21 E-value=0.0035 Score=66.30 Aligned_cols=179 Identities=16% Similarity=0.079 Sum_probs=90.5
Q ss_pred ccccchhhHHHHHHHHhc---C--cCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 158 EVYGREEDKEKIVERLVK---D--VAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~---~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
++.|.+..++.+.+.... . ..+-...+-|.++|++|+|||.+|+.+.+.. .-.| +.++ ...++
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~-----~~l~----~~~l~- 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL-----LRLD----VGKLF- 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE-----EEEE----hHHhc-
Confidence 466766665555442211 0 0112345668899999999999999999832 2121 2221 11111
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc--------chh----hHHHHhhhcCCCCCCcEEEEecC
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE--------DQE----KWDQLKCTLTCGSKGSSVVVTTR 300 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~--------~~~----~~~~l~~~l~~~~~gs~iivTtr 300 (581)
....+ .+...+.+.+...-...+++|++|++... +.. ....+...+.....+..||.||.
T Consensus 297 ---~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 297 ---GGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred ---ccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 11101 11222333333222357899999998521 000 11122223333334456777777
Q ss_pred chhH-HHhh----CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 301 LAKV-ASIV----GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 301 ~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
..+. ...+ .-...+.+...+.++-.++|..+..........+ .-...+++.+.|.-
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~--~dl~~La~~T~GfS 429 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKK--YDIKKLSKLSNKFS 429 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccc--cCHHHHHhhcCCCC
Confidence 5532 1111 1234778888899999999987765432111000 11456666666654
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0019 Score=70.76 Aligned_cols=158 Identities=19% Similarity=0.245 Sum_probs=86.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC-CcCceeEEEecCCCcHhHH-HHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR-HFEFRIWVFVFEDFNVRRL-MTDI 234 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~l-~~~i 234 (581)
+.++||++|+.++++.|..... +-+ .++|.+|||||++|.-++. ++.. .-+.. . .-.++ --++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---NNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~--L------~~~~i~sLD~ 234 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---NNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPES--L------KDKRIYSLDL 234 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---CCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHH--H------cCCEEEEecH
Confidence 4589999999999999987644 222 2679999999999887776 3221 11100 0 00000 0011
Q ss_pred HHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc---------chhhHHHHhhhcCCCCCCcEEEEecCchhHH
Q 043779 235 ITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE---------DQEKWDQLKCTLTCGSKGSSVVVTTRLAKVA 305 (581)
Q Consensus 235 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 305 (581)
..-..+..-...=.+.+...+.+.-+.++..|++|.++.. ..+.-+.++.+|..+. --.|=.||- .+.-
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~-~EYR 312 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTL-DEYR 312 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccH-HHHH
Confidence 1111222222222233333344433445899999999642 1222333555554332 223444554 3332
Q ss_pred Hhh-------CCCCeeeCCCCChHhHHHHHHhh
Q 043779 306 SIV-------GTLPVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 306 ~~~-------~~~~~~~l~~L~~~e~~~lf~~~ 331 (581)
..+ ...+.+.+...+.+++..+++..
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 222 33458899999999999988754
No 177
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.18 E-value=0.0016 Score=72.50 Aligned_cols=130 Identities=17% Similarity=0.211 Sum_probs=74.6
Q ss_pred ccccchhhHHHHHHHHhcCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHH
Q 043779 158 EVYGREEDKEKIVERLVKDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 233 (581)
.++|-++.++.|.+.+..... .......+.++|++|+|||++|+.+... ... ..+.++.+.-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~-~--- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH-T--- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc-c---
Confidence 478999999988888764211 1123457889999999999999999873 221 12233333221111 1
Q ss_pred HHHhhCCCCCCc---CCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEec
Q 043779 234 IITSSGGNVSEA---WNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTT 299 (581)
Q Consensus 234 il~~l~~~~~~~---~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 299 (581)
+ ..+.+..+.. .....+...++ +....+|+||++...+...++.+...+..+. ..+-+|+||
T Consensus 530 ~-~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 530 V-SRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred H-HHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 1 1222221111 11112222222 2334699999998888888888877765331 234477777
Q ss_pred C
Q 043779 300 R 300 (581)
Q Consensus 300 r 300 (581)
.
T Consensus 606 N 606 (758)
T PRK11034 606 N 606 (758)
T ss_pred C
Confidence 6
No 178
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.15 E-value=0.0029 Score=65.86 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=81.9
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH-H
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI-I 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i-l 235 (581)
..++||++.++.+...+..+ .-|.|.|++|+|||+||+.+.........|... .+.-. ...+++..+ +
T Consensus 20 ~~i~gre~vI~lll~aalag-------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~---~~~ft-tp~DLfG~l~i 88 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYL---MTRFS-TPEEVFGPLSI 88 (498)
T ss_pred hhccCcHHHHHHHHHHHccC-------CCEEEECCCChhHHHHHHHHHHHhcccCcceee---eeeec-CcHHhcCcHHH
Confidence 35889999999998888743 246699999999999999998732222223221 11100 112222111 0
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC---------CCcEEEEecCchhHHH
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS---------KGSSVVVTTRLAKVAS 306 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~iivTtr~~~v~~ 306 (581)
..... .... .......+. ..-++++|+++.........+...+.... -..++++++.++ +..
T Consensus 89 ~~~~~----~g~f---~r~~~G~L~-~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~-LPE 159 (498)
T PRK13531 89 QALKD----EGRY---QRLTSGYLP-EAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE-LPE 159 (498)
T ss_pred hhhhh----cCch---hhhcCCccc-cccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-Ccc
Confidence 00000 0000 000111111 12289999999888777777777763211 122455544432 221
Q ss_pred -------hhCC-CCeeeCCCCChH-hHHHHHHhh
Q 043779 307 -------IVGT-LPVYRLSDLSED-DCWLLFKQR 331 (581)
Q Consensus 307 -------~~~~-~~~~~l~~L~~~-e~~~lf~~~ 331 (581)
.+.. .-.+.+++++.+ +-.+++...
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 1111 126788999854 447777654
No 179
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.011 Score=62.00 Aligned_cols=176 Identities=14% Similarity=0.138 Sum_probs=93.5
Q ss_pred ccccchhhHHHHHHHHhcCc-------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHH
Q 043779 158 EVYGREEDKEKIVERLVKDV-------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRL 230 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l 230 (581)
++=|.+..+.+|.+++..-. .|-...+-|.++|++|.|||.||+.+.+...+ . ++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--P-----f~~isAp------ 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--P-----FLSISAP------ 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--c-----eEeecch------
Confidence 46688888888888776421 12234566779999999999999999984322 2 3333322
Q ss_pred HHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc-----------hhhHHHHhhhcCC------CCCCc
Q 043779 231 MTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED-----------QEKWDQLKCTLTC------GSKGS 293 (581)
Q Consensus 231 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~------~~~gs 293 (581)
+|+....+ ...+.+.+...+....-++++++|++.-.. .-...+|...+.. .+.+.
T Consensus 258 --eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~V 330 (802)
T KOG0733|consen 258 --EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPV 330 (802)
T ss_pred --hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCe
Confidence 12222222 233444455555556689999999994311 1112233333221 12333
Q ss_pred EEEEecCchhH-HHhh---CC-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC
Q 043779 294 SVVVTTRLAKV-ASIV---GT-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV 357 (581)
Q Consensus 294 ~iivTtr~~~v-~~~~---~~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~ 357 (581)
-||-+|..++. -..+ +. ...+.|.--++..-.+++...+-+......-+ ..+|++.+-|.
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 34433433332 2222 22 23566776676666666666554333222222 34555555543
No 180
>PHA00729 NTP-binding motif containing protein
Probab=97.14 E-value=0.0025 Score=59.71 Aligned_cols=24 Identities=38% Similarity=0.307 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+...|.|+|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999987
No 181
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.13 E-value=0.0098 Score=55.82 Aligned_cols=177 Identities=18% Similarity=0.156 Sum_probs=95.0
Q ss_pred CccccchhhHHH---HHHHHhcCcC-CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEK---IVERLVKDVA-GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~---l~~~L~~~~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
++++|.++.+.+ |++.|..+.. +.-.++-|..+|++|.|||.+|+.+.+.. +..| +.+. ..+++.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~-----l~vk----at~liG 189 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL-----LLVK----ATELIG 189 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--CCce-----EEec----hHHHHH
Confidence 467898766654 5666665432 33457788899999999999999999943 2222 1221 111111
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc------------chhhHHHHhhhcC--CCCCCcEEEEe
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE------------DQEKWDQLKCTLT--CGSKGSSVVVT 298 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~------------~~~~~~~l~~~l~--~~~~gs~iivT 298 (581)
+ -. . +...++.+...+.-+--++++++|.+.-. -.+..+.|...+. ..+.|...|-.
T Consensus 190 e---hV----G--dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 190 E---HV----G--DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred H---Hh----h--hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 1 11 0 11122222222222346899999987321 0122333444443 23456666766
Q ss_pred cCchhHHHhh-CC--CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC
Q 043779 299 TRLAKVASIV-GT--LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV 357 (581)
Q Consensus 299 tr~~~v~~~~-~~--~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~ 357 (581)
|.+.+..... .. ...++..--+.+|-.+++...+-.-.-.-. .-.+.++.+.+|+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~----~~~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD----ADLRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc----cCHHHHHHHhCCC
Confidence 7766554332 11 125666667888888888877643221111 1145566666554
No 182
>PTZ00494 tuzin-like protein; Provisional
Probab=97.12 E-value=0.21 Score=51.05 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=103.9
Q ss_pred cccCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 153 VVAQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 153 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
...+..++.|+.|-..+.+.|.+-.. ..++++.+.|.-|.||++|.+.....+.. ..++|.+... ++-++
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~--aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLr 436 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP--SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLR 436 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC--CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHH
Confidence 34456789999998888888876543 47899999999999999999988864322 3567777654 44677
Q ss_pred HHHHhhCCCCCCc--CCHHHHHHHH---HHHhcCcceEEEEecccccc-hhhHHHHhhhcCCCCCCcEEEEecCchhHHH
Q 043779 233 DIITSSGGNVSEA--WNLDLLQRRL---KDMLDGKRYLLVLDDVWNED-QEKWDQLKCTLTCGSKGSSVVVTTRLAKVAS 306 (581)
Q Consensus 233 ~il~~l~~~~~~~--~~~~~l~~~l---~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 306 (581)
.+.+.++-+..+. +-.+-+.+.. +....++.-+||+-=-...+ .-.+++.. .|.+...-|.|++---.+.+.-
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhch
Confidence 7888887654432 1223233322 22344666666654221111 11122211 3444455677776554333322
Q ss_pred hh---CCCCeeeCCCCChHhHHHHHHhhh
Q 043779 307 IV---GTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 307 ~~---~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
.. .....|.+.+++..+|.++..+..
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 11 112378899999999999887654
No 183
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.10 E-value=0.0005 Score=68.76 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=42.7
Q ss_pred CCccccchhhHHHHHHHHhcCcCC-CCCeEEEEEEecCCCcHHHHHHHHhcCc
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAG-SDDISIYPIVGMGGLGKTTLAQLVFNDD 207 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 207 (581)
..+++|.++.++++++++.....+ ....+++.++|++|+||||||+.+.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 347999999999999999775432 2345789999999999999999998743
No 184
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.09 E-value=0.003 Score=67.29 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=45.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEe
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFV 221 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 221 (581)
.+++--.+-++++..||.....+....+++.+.|++|+||||.++.+++. -.|+..-|.+-
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~np 79 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWINP 79 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecCC
Confidence 34555567788999999865444345679999999999999999999973 24566667643
No 185
>PRK07261 topology modulation protein; Provisional
Probab=97.05 E-value=0.0014 Score=59.39 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 186
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.00 E-value=0.005 Score=55.07 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=28.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN 226 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 226 (581)
++.|+|++|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36799999999999999998732 22334466776655543
No 187
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.99 E-value=0.0012 Score=57.67 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=62.3
Q ss_pred ccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc-cCCcCceeEEEecCCCcHhHHHHHHHHhh
Q 043779 160 YGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI-KRHFEFRIWVFVFEDFNVRRLMTDIITSS 238 (581)
Q Consensus 160 vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~l~~~il~~l 238 (581)
||....++++.+.+..-.. ...-|.|+|.+|+||+++|+.++..... ...|... .+..
T Consensus 1 vG~S~~~~~l~~~l~~~a~---~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~--------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK---SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS--------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC---SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC---------------
T ss_pred CCCCHHHHHHHHHHHHHhC---CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh---------------
Confidence 4666777777777665432 2345679999999999999988874221 1111110 0000
Q ss_pred CCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCC-CCCCcEEEEecC
Q 043779 239 GGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTC-GSKGSSVVVTTR 300 (581)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr 300 (581)
.+ .+.+.. -+.--|+|+|+...+......+...+.. .....|+|.||.
T Consensus 60 -------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~ 108 (138)
T PF14532_consen 60 -------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSS 108 (138)
T ss_dssp -------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEEC
T ss_pred -------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 01 111111 1445678999977776666777777663 356789999998
No 188
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.99 E-value=0.0031 Score=63.51 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=61.7
Q ss_pred hHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc-Cc-eeEEEecCCC-cHhHHHHHHHHhhCCC
Q 043779 165 DKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF-EF-RIWVFVFEDF-NVRRLMTDIITSSGGN 241 (581)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~-~~wv~v~~~~-~~~~l~~~il~~l~~~ 241 (581)
-..++++.+..-.. +. -+.|+|.+|+|||||++.+++. +..+. +. ++|+.+.+.. .+.+++..+...+...
T Consensus 119 ~~~RvID~l~PiGk---GQ-R~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIGK---GQ-RGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecCC---Cc-eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 34457787765422 22 4479999999999999998873 32222 33 3576766554 5678888887766544
Q ss_pred CCCcCCHH------HHHHHHHHH-hcCcceEEEEecc
Q 043779 242 VSEAWNLD------LLQRRLKDM-LDGKRYLLVLDDV 271 (581)
Q Consensus 242 ~~~~~~~~------~l~~~l~~~-l~~k~~LlVlDdv 271 (581)
..+..... ........+ -.+++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 32221111 111112221 1489999999999
No 189
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.97 E-value=0.0023 Score=60.26 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=36.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
..-.++.|+|++|+|||+++.+++.. ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 34579999999999999999998873 223345678998875 55555443
No 190
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.97 E-value=0.00059 Score=57.97 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 191
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.96 E-value=0.012 Score=52.83 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCcceEEEEeccc-ccc-hhhHHHHhhhcCCCCCCcEEEEecCchhHHHhhC
Q 043779 248 LDLLQRRLKDMLDGKRYLLVLDDVW-NED-QEKWDQLKCTLTCGSKGSSVVVTTRLAKVASIVG 309 (581)
Q Consensus 248 ~~~l~~~l~~~l~~k~~LlVlDdv~-~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 309 (581)
.++-.-.+.+.+-+++-+|+=|.-- +.| ...|+.+.-.-.-+..|..||++|.+.++...+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3444445666667788899988652 112 3456554443345668999999999998877764
No 192
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.95 E-value=0.003 Score=60.24 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=33.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRL 230 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l 230 (581)
.-.++.|+|.+|+|||++|.+++... ...-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 45789999999999999999998742 2233567888876 5554443
No 193
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.94 E-value=0.005 Score=58.72 Aligned_cols=88 Identities=20% Similarity=0.198 Sum_probs=53.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCc------CceeEEEecCCCcHhHHHHHHHHhhCCCC---------CCcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF------EFRIWVFVFEDFNVRRLMTDIITSSGGNV---------SEAW 246 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~wv~v~~~~~~~~l~~~il~~l~~~~---------~~~~ 246 (581)
.-.++.|+|++|+|||+|+.+++.... ..- ..++|+.....++...+. .+........ ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 456899999999999999999876321 222 456788887776665443 3333222110 1123
Q ss_pred CHHHHHHHHHHHhc----CcceEEEEeccc
Q 043779 247 NLDLLQRRLKDMLD----GKRYLLVLDDVW 272 (581)
Q Consensus 247 ~~~~l~~~l~~~l~----~k~~LlVlDdv~ 272 (581)
+.+++...+..... .+.-|+|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 45555555555442 345588999873
No 194
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.011 Score=59.91 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=56.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc--HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHh
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN--VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDML 259 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 259 (581)
..++|+++|++|+||||++..++.... ...+ .+..+.. +.+. ..+-+......++.......+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 457999999999999999999986322 2222 2333433 2332 222333333344433222345666666665543
Q ss_pred cC-cceEEEEecccccc--hhhHHHHhhhcC
Q 043779 260 DG-KRYLLVLDDVWNED--QEKWDQLKCTLT 287 (581)
Q Consensus 260 ~~-k~~LlVlDdv~~~~--~~~~~~l~~~l~ 287 (581)
.. +.=++++|-..... ......+...+.
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 21 23577888775432 333455555444
No 195
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.94 E-value=0.0033 Score=57.36 Aligned_cols=36 Identities=31% Similarity=0.546 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEE
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWV 219 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 219 (581)
...+|.+.|++|+||||+|+.++. .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 446899999999999999999998 444445455444
No 196
>PHA02244 ATPase-like protein
Probab=96.93 E-value=0.007 Score=60.78 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=51.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCC-CCCCcCCHHHHHHHHHHHhcCcc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGG-NVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~-~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
-|.|+|++|+|||+||+.++.. ... -|+.++...+. +...+. .......... +....+ +-
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~--lg~-----pfv~In~l~d~-------~~L~G~i~~~g~~~dgp----Ll~A~~-~G 181 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA--LDL-----DFYFMNAIMDE-------FELKGFIDANGKFHETP----FYEAFK-KG 181 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCC-----CEEEEecChHH-------HhhcccccccccccchH----HHHHhh-cC
Confidence 3568999999999999999973 221 23344321110 011110 0011111111 111122 34
Q ss_pred eEEEEecccccchhhHHHHhhhcCC-----------CCCCcEEEEecCc
Q 043779 264 YLLVLDDVWNEDQEKWDQLKCTLTC-----------GSKGSSVVVTTRL 301 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iivTtr~ 301 (581)
-+++||++..........|...+.. ..++.++|+|+..
T Consensus 182 gvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 182 GLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred CEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 6999999976555555445444421 1356789998884
No 197
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.024 Score=61.87 Aligned_cols=182 Identities=17% Similarity=0.133 Sum_probs=102.0
Q ss_pred Cccccchh---hHHHHHHHHhcCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREE---DKEKIVERLVKDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~---~~~~l~~~L~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.++.|-++ |+.++++.|..+.. |-.-++=+.++|+||+|||-||++++.... +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 35677765 55555666665421 223456677999999999999999998432 224555433
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHh-cCcceEEEEeccccc---------------chhhHHHHhhhcCCCC--C
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDML-DGKRYLLVLDDVWNE---------------DQEKWDQLKCTLTCGS--K 291 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~---------------~~~~~~~l~~~l~~~~--~ 291 (581)
+.++.+.+.. . ...+.|.... ...+++|.+|++... ....++++...+.... .
T Consensus 379 ---EFvE~~~g~~--a----srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--A----SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc--h----HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1222221110 1 1112222221 346788888887321 1233445544444332 2
Q ss_pred CcEEEEecCchhHHHh--h--C-CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 292 GSSVVVTTRLAKVASI--V--G-TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 292 gs~iivTtr~~~v~~~--~--~-~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
+.-++-+|+..++... + + -...+.+..-+.....++|..++...... .+..++.+ |+.+.-|.+=|..
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHHH
Confidence 3344445665555332 1 1 13467888888888999999888654432 33445666 8888888876643
No 198
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.90 E-value=0.018 Score=57.65 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=23.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+..++|||++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999984
No 199
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.005 Score=65.63 Aligned_cols=163 Identities=21% Similarity=0.214 Sum_probs=90.4
Q ss_pred CCccccchhhHHHHHHHHhcCc-CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDV-AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 234 (581)
+.+.+|.++-+++|++++.-.. .++-+-++++.+|+||||||++|+.++. .....|-. ++++.-.|..+|-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR---fSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR---FSVGGMTDVAEIK--- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE---EeccccccHHhhc---
Confidence 5567999999999999886432 1234568999999999999999999997 44444421 2444444443331
Q ss_pred HHhhCCCCC--CcCCHHHHHHHHHHHhcCcceEEEEecccccc----hhhHHHHhhhcC-------------CCCCCcEE
Q 043779 235 ITSSGGNVS--EAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED----QEKWDQLKCTLT-------------CGSKGSSV 295 (581)
Q Consensus 235 l~~l~~~~~--~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~----~~~~~~l~~~l~-------------~~~~gs~i 295 (581)
+... -..-+..+.+.|+.. +-.+-|+.||.|.... .+.-..+...|. -.-.=|+|
T Consensus 482 -----GHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 482 -----GHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred -----ccceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 1110 011123444455543 2345678888884211 011122333222 11134566
Q ss_pred EEecCchhHH----HhhCCCCeeeCCCCChHhHHHHHHhhh
Q 043779 296 VVTTRLAKVA----SIVGTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 296 ivTtr~~~v~----~~~~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
++...-..+. ........+++.+-..+|-..+-.++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 5443311111 112333478899988888777666554
No 200
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.002 Score=62.27 Aligned_cols=81 Identities=23% Similarity=0.257 Sum_probs=47.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGK 262 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 262 (581)
..-+.++|.+|+|||.||.++.+... +..+ .+.+++ ..+++..+...... ......+.+.+. +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhh-c
Confidence 34677999999999999999999543 2222 233443 34555555544432 111222333222 3
Q ss_pred ceEEEEecccccchhhHH
Q 043779 263 RYLLVLDDVWNEDQEKWD 280 (581)
Q Consensus 263 ~~LlVlDdv~~~~~~~~~ 280 (581)
-=||||||+.......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 459999999665444443
No 201
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.019 Score=60.21 Aligned_cols=155 Identities=19% Similarity=0.237 Sum_probs=86.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
.+.-|.+||++|.|||-||++|+| ...-+| +++-.+ +++.... + .....+....++.=..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELlNkYV----G-----ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELLNKYV----G-----ESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHHHHHh----h-----hHHHHHHHHHHHhhcC
Confidence 345677999999999999999999 444444 444322 1221111 1 1122233333333346
Q ss_pred cceEEEEeccccc-----c------hhhHHHHhhhcCC--CCCCcEEEEecCchhHHHhh----C-CCCeeeCCCCChHh
Q 043779 262 KRYLLVLDDVWNE-----D------QEKWDQLKCTLTC--GSKGSSVVVTTRLAKVASIV----G-TLPVYRLSDLSEDD 323 (581)
Q Consensus 262 k~~LlVlDdv~~~-----~------~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~----~-~~~~~~l~~L~~~e 323 (581)
-+++|+||.+... + .-..++|...+.. ...|.-||-.|..+++.... + -....-+..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7999999998431 1 1123444444442 34566777777766654332 1 12366677778888
Q ss_pred HHHHHHhhhcCCCC--CCCchHHHHHHHHHHHcCCCc
Q 043779 324 CWLLFKQRAFGNDT--EPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 324 ~~~lf~~~a~~~~~--~~~~~l~~~~~~I~~~~~G~P 358 (581)
-.++++...-.... ..+-++.++++. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888887653221 233345554432 3455543
No 202
>PRK13695 putative NTPase; Provisional
Probab=96.87 E-value=0.0021 Score=58.63 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999998874
No 203
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.84 E-value=0.011 Score=64.30 Aligned_cols=134 Identities=17% Similarity=0.126 Sum_probs=73.3
Q ss_pred cCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcc-ccCCcCceeEEEecCCCcHhHHHHH
Q 043779 155 AQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDR-IKRHFEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 155 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~l~~~ 233 (581)
....++|....+.++.+.+..... ....|.|+|.+|+|||++|+.+.+... .... -+.+++..-.. ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~---~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~p---fv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR---SNSTVLLRGESGTGKELIAKAIHYLSPRAKRP---FVKVNCAALSE--TLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC---cCCCEEEECCCCccHHHHHHHHHHhCCCCCCC---eEEeecCCCCH--HHHHH
Confidence 346789999999999988875433 223456999999999999999987321 1111 22334433211 22222
Q ss_pred HHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecC
Q 043779 234 IITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTR 300 (581)
Q Consensus 234 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 300 (581)
.+.+......... .............=.|+||++..........+...+..+. ...+||.||.
T Consensus 266 ---~lfg~~~~~~~~~-~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGA-IAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCC-CcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 1112111000000 0000000001223468899998777777777777665322 1358888876
No 204
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.83 E-value=0.015 Score=53.19 Aligned_cols=120 Identities=19% Similarity=0.114 Sum_probs=63.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEE---ecCCCcHhHH------HHHHHHhhCCCC-----CCcCCHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVF---VFEDFNVRRL------MTDIITSSGGNV-----SEAWNLD 249 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~l------~~~il~~l~~~~-----~~~~~~~ 249 (581)
.+++|.|+.|.|||||.+.++... ......+++. +. ..+.... ..++++.++... ....+..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 488999999999999999998732 2233344332 11 1111111 112344443211 1112222
Q ss_pred H-HHHHHHHHhcCcceEEEEecccc-cchhhHHHHhhhcCCC-CC-CcEEEEecCchhHHHh
Q 043779 250 L-LQRRLKDMLDGKRYLLVLDDVWN-EDQEKWDQLKCTLTCG-SK-GSSVVVTTRLAKVASI 307 (581)
Q Consensus 250 ~-l~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~~ 307 (581)
+ -.-.+.+.+-..+-++++|+.-. .+......+...+... .. +..||++|.+......
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 2 22234555566788999999732 2334444454444422 12 5678888887665433
No 205
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.83 E-value=0.0016 Score=58.80 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=42.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhC---CCCCCcCCHHHHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSG---GNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~---~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
++.|.|.+|+||||+|..+... ... ..+++.....++. +....|..... ...........+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 5789999999999999999863 111 2344444444333 33333322221 1111111222344445443333
Q ss_pred cceEEEEecc
Q 043779 262 KRYLLVLDDV 271 (581)
Q Consensus 262 k~~LlVlDdv 271 (581)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337889987
No 206
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.81 E-value=0.0024 Score=64.05 Aligned_cols=101 Identities=18% Similarity=0.132 Sum_probs=52.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
..+.++|++|+|||.||..+++... ..-..++|+++ .+++..+...-... ..+... .+.. +. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~------~~l~~~l~~~~~~~---~~~~~~---~~~~-l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTA------DELIEILREIRFNN---DKELEE---VYDL-LI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEH------HHHHHHHHHHHhcc---chhHHH---HHHH-hc-cC
Confidence 5688999999999999999998432 22223445543 22333332211110 011111 1222 22 23
Q ss_pred eEEEEecccccchhhHH--HHhhhcCC-CCCCcEEEEecC
Q 043779 264 YLLVLDDVWNEDQEKWD--QLKCTLTC-GSKGSSVVVTTR 300 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr 300 (581)
=||||||+.......|. .+...+.. ...+-.+||||.
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 48999999654333332 23333331 123456888887
No 207
>PRK06696 uridine kinase; Validated
Probab=96.80 E-value=0.0016 Score=61.96 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=35.1
Q ss_pred cchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 161 GREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 161 GR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.|.+-+++|.+.+..... +...+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~--~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL--TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhCC--CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 356677888888765322 46789999999999999999999873
No 208
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.79 E-value=0.013 Score=53.47 Aligned_cols=117 Identities=18% Similarity=0.086 Sum_probs=58.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhC--CCC------------CCcCCHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSG--GNV------------SEAWNLD 249 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~--~~~------------~~~~~~~ 249 (581)
.+++|.|+.|.|||||++.+..-.. .....+++.-. ++......+-..++ .+. ....+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 4789999999999999999987422 11222322110 11111000101010 000 1111122
Q ss_pred HH-HHHHHHHhcCcceEEEEeccccc-chhhHHHHhhhcCCCCCCcEEEEecCchhHHH
Q 043779 250 LL-QRRLKDMLDGKRYLLVLDDVWNE-DQEKWDQLKCTLTCGSKGSSVVVTTRLAKVAS 306 (581)
Q Consensus 250 ~l-~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 306 (581)
+. .-.+.+.+-.++-+++||+.... +....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22 22344455567789999997432 33333334333332223567888888776654
No 209
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.78 E-value=0.025 Score=52.99 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=37.1
Q ss_pred HHHHHHHhcCcceEEEEeccc-ccchhhHHHHhhhcCCC--CCCcEEEEecCchhHHHhhC
Q 043779 252 QRRLKDMLDGKRYLLVLDDVW-NEDQEKWDQLKCTLTCG--SKGSSVVVTTRLAKVASIVG 309 (581)
Q Consensus 252 ~~~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~ 309 (581)
.-.+.+.+-..+-+|+-|+-= +-|...-+.+...+... ..|..||+.|.++.++..+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 335666677778889999752 22333333444444422 34778999999999998754
No 210
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.77 E-value=0.0024 Score=57.57 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=28.4
Q ss_pred EEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcH
Q 043779 186 YPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNV 227 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 227 (581)
+.|.|.+|+|||++|.++... .....+++.....++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~ 38 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD 38 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH
Confidence 579999999999999999863 2235667777776654
No 211
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.022 Score=60.86 Aligned_cols=161 Identities=15% Similarity=0.065 Sum_probs=81.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc--HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN--VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
.+-|.|.|+.|+|||+||+.+++... +...-++.+++++.-.. ...+++ .+.....+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHHh
Confidence 45678999999999999999998543 33444455666543221 111111 11222334456
Q ss_pred CcceEEEEeccccc------chhhHHH----Hhhhc----C-CCCCCc--EEEEecCchhHHH-hhCC----CCeeeCCC
Q 043779 261 GKRYLLVLDDVWNE------DQEKWDQ----LKCTL----T-CGSKGS--SVVVTTRLAKVAS-IVGT----LPVYRLSD 318 (581)
Q Consensus 261 ~k~~LlVlDdv~~~------~~~~~~~----l~~~l----~-~~~~gs--~iivTtr~~~v~~-~~~~----~~~~~l~~ 318 (581)
..+-+|||||+..- +..+|.. +...+ . ....+. .+|.|.....-.. .+.. ..+..|.+
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 68999999998321 1111211 11111 1 112233 4444544322211 1111 12677888
Q ss_pred CChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC-chHHHHh
Q 043779 319 LSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV-PLAAKTL 364 (581)
Q Consensus 319 L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~-PLai~~~ 364 (581)
+...+-.++++...-...... ..+...-+..+|+|. |.-+.++
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~---~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDI---TMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhh---hhHHHHHHHHhcCCccchhHHHH
Confidence 888877777665442221111 112233478888875 5555543
No 212
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.74 E-value=0.0061 Score=57.78 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=30.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN 226 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 226 (581)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 45789999999999999999998732 22223466777654443
No 213
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.74 E-value=0.035 Score=55.16 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=79.7
Q ss_pred ccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHh
Q 043779 158 EVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITS 237 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~ 237 (581)
.++=.......++.++... +.|.|.|++|+||||+|+.++. .....| +-|.++...+..+++..-.-.
T Consensus 46 ~y~f~~~~~~~vl~~l~~~-------~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~~DliG~~~~~ 113 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD-------RRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSRIDLVGKDAIV 113 (327)
T ss_pred CccCCHHHHHHHHHHHhcC-------CcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCChhhcCCCceee
Confidence 4444445556677777531 3578999999999999999987 333222 245555554444333221100
Q ss_pred hCCCCC-CcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcC--------C------CCCCcEEEEecCch
Q 043779 238 SGGNVS-EAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLT--------C------GSKGSSVVVTTRLA 302 (581)
Q Consensus 238 l~~~~~-~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~--------~------~~~gs~iivTtr~~ 302 (581)
+..... ...... .+-... .+...+++|++....+.....+...+. . ..+..++|.|....
T Consensus 114 l~~g~~~~~f~~G----pL~~A~-~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 114 LKDGKQITEFRDG----ILPWAL-QHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred ccCCcceeEEecC----cchhHH-hCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 000000 000000 011111 245779999986555444444322222 1 12356777777643
Q ss_pred hH--------------HHhhCCCC-eeeCCCCChHhHHHHHHhhh
Q 043779 303 KV--------------ASIVGTLP-VYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 303 ~v--------------~~~~~~~~-~~~l~~L~~~e~~~lf~~~a 332 (581)
.- ...+.... .+.+.-++.++=.+++...+
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 21 01111111 34677777877777776654
No 214
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.031 Score=59.34 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=87.5
Q ss_pred ccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 158 EVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
++=|-++-+.++.+.+..+.. +-..++-|..+|+||.|||++|+.+.+ .....| +.+..+ +
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp----E 503 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP----E 503 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----H
Confidence 344566666666655543211 223567788999999999999999998 333344 333221 1
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc-----------hhhHHHHhhhcCCCCC--CcEEE
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED-----------QEKWDQLKCTLTCGSK--GSSVV 296 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~~--gs~ii 296 (581)
++ ....+. ....+....++.=+--+.+|+||.+.... .-....|...+..... +.-||
T Consensus 504 L~----sk~vGe-----SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 504 LF----SKYVGE-----SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred HH----HHhcCc-----hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 11 111111 12222222222222356899999884311 1123333334432222 33344
Q ss_pred EecCchhHHH-h-hC---CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHH
Q 043779 297 VTTRLAKVAS-I-VG---TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAI 346 (581)
Q Consensus 297 vTtr~~~v~~-~-~~---~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~ 346 (581)
-.|..++... . +. ....+.+++-+.+.-.++|+.++-.....+.-++.++
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~L 629 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEEL 629 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHH
Confidence 4444343322 2 22 2346777777788888999998866554444344443
No 215
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.73 E-value=0.0056 Score=57.05 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=59.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh-HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR-RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGK 262 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~-~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 262 (581)
.++.|+|++|+||||++..+... ........++. +.++.... .-...++.+- .-..+.......++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~----~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQR----EVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeec----ccCCCccCHHHHHHHHhcCC
Confidence 47889999999999999987763 22233333332 22221100 0000111110 00112233455677777767
Q ss_pred ceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHHh
Q 043779 263 RYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASI 307 (581)
Q Consensus 263 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 307 (581)
+=++++|++. +...+..+.... ..|..++.|+...++...
T Consensus 75 pd~ii~gEir--d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 75 PDVILVGEMR--DLETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred cCEEEEcCCC--CHHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 7899999994 333443333322 235567777776655443
No 216
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.71 E-value=0.0056 Score=60.41 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=46.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCcccc-CCcCceeEEEecCCCc--HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIK-RHFEFRIWVFVFEDFN--VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDM 258 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~ 258 (581)
..+++.|+|++|+||||++..++...... +.+ .+..++.. .+. ...-+......++.......+...+...+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D-~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTD-TYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECC-ccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc
Confidence 45699999999999999999887643222 222 23344432 222 22223333333333333334455555555543
Q ss_pred hcCcceEEEEecc
Q 043779 259 LDGKRYLLVLDDV 271 (581)
Q Consensus 259 l~~k~~LlVlDdv 271 (581)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 347777753
No 217
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.69 E-value=0.0075 Score=53.43 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=61.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC---CCcHhHHHHHHHHhh-----CCCC--CCcCCHH----
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE---DFNVRRLMTDIITSS-----GGNV--SEAWNLD---- 249 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~l~~~il~~l-----~~~~--~~~~~~~---- 249 (581)
..|-|++..|.||||+|....- +..++=..+.++.+-. ..+...++..+ ..+ +... ......+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4677888999999999987766 3333322333433332 23333333333 111 0000 0011111
Q ss_pred --HHHHHHHHHhc-CcceEEEEeccccc---chhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 250 --LLQRRLKDMLD-GKRYLLVLDDVWNE---DQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 250 --~l~~~l~~~l~-~k~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
...+..++.+. ++-=|+|||++-.. .....+.+...+.....+.-+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12222333443 34569999998322 2234456666666666778999999964
No 218
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.69 E-value=0.014 Score=52.99 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=59.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC---ccccCC---cC--ceeEEEecCCCcHhHHHHHHHHhhCCCC------CCcCCHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND---DRIKRH---FE--FRIWVFVFEDFNVRRLMTDIITSSGGNV------SEAWNLD 249 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~---~~~~~~---F~--~~~wv~v~~~~~~~~l~~~il~~l~~~~------~~~~~~~ 249 (581)
.+++|+|+.|+|||||.+.+..+ ..+... |. ...|+ .+ .+.+..++... ....+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 58899999999999999998632 111111 11 11221 11 34455554321 1112222
Q ss_pred HH-HHHHHHHhcCc--ceEEEEecccc-cchhhHHHHhhhcCCC-CCCcEEEEecCchhHHH
Q 043779 250 LL-QRRLKDMLDGK--RYLLVLDDVWN-EDQEKWDQLKCTLTCG-SKGSSVVVTTRLAKVAS 306 (581)
Q Consensus 250 ~l-~~~l~~~l~~k--~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 306 (581)
+. .-.+...+-.+ +-++++|+.-. .+....+.+...+... ..|..||++|.+.+...
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22 22344445555 67888898733 2334444444444321 24667888888776654
No 219
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.68 E-value=0.024 Score=62.72 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=89.2
Q ss_pred ccccchhhHHHHHHHHh---cCc----CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHH
Q 043779 158 EVYGREEDKEKIVERLV---KDV----AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRL 230 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~---~~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l 230 (581)
++.|.+...+++.+.+. ... .+..-.+-|.|+|++|+|||++|+.+... ....| +.++.. ++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----DF 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----Hh
Confidence 46676666655544432 211 01112334889999999999999999873 22222 222211 11
Q ss_pred HHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc----------hhhH----HHHhhhcCC--CCCCcE
Q 043779 231 MTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED----------QEKW----DQLKCTLTC--GSKGSS 294 (581)
Q Consensus 231 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~----~~l~~~l~~--~~~gs~ 294 (581)
. ....+ .....+...+.......+.+|++|+++... .... ..+...+.. ...+..
T Consensus 222 ~----~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 V----EMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred H----Hhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 1 01101 112233333333334568899999985421 1112 222222221 233556
Q ss_pred EEEecCchhHHHhh--C---CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCC
Q 043779 295 VVVTTRLAKVASIV--G---TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKG 356 (581)
Q Consensus 295 iivTtr~~~v~~~~--~---~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G 356 (581)
+|.||...+..... . ....+.+...+.++-.+++..+..........+ ...+++.+.|
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G 355 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPG 355 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCC
Confidence 66688766543221 1 124677888888888888887764432222222 2345555555
No 220
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.094 Score=51.94 Aligned_cols=153 Identities=10% Similarity=0.094 Sum_probs=91.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCc---c---ccC-CcC-ceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDD---R---IKR-HFE-FRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQR 253 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~---~---~~~-~F~-~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~ 253 (581)
-..+..++|..|+||+++|..+.+.. . ... ..+ ...++.... .....+++.+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~ 76 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLS 76 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHH
Confidence 34566799999999999999887632 0 011 011 111221100 1112233333
Q ss_pred HHHHHh-----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC-chhHHHh-hCCCCeeeCCCCChHhHHH
Q 043779 254 RLKDML-----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR-LAKVASI-VGTLPVYRLSDLSEDDCWL 326 (581)
Q Consensus 254 ~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~-~~~~~~~~l~~L~~~e~~~ 326 (581)
.....- .+++=++|+|++........+.+...+....+.+.+|++|. ...+... ......+++.+++.++...
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 222211 14677889999987777778888888887777777776554 3444433 3445689999999999998
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 327 LFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 327 lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
.+.... . ++ +.+..++...+|.--|+..
T Consensus 157 ~l~~~~--~----~~---~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 157 KLLSKN--K----EK---EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHcC--C----Ch---hHHHHHHHHcCCHHHHHHH
Confidence 887641 1 11 3355666666663344444
No 221
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.68 E-value=0.0071 Score=58.69 Aligned_cols=57 Identities=26% Similarity=0.237 Sum_probs=39.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccC----CcCceeEEEecCCCcHhHHHHHHHHhhC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKR----HFEFRIWVFVFEDFNVRRLMTDIITSSG 239 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~il~~l~ 239 (581)
.-.+.=|+|++|+|||.|+.+++-...... .=..++|++....|+..++. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 345889999999999999988865322221 12347899999999887775 4565543
No 222
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.68 E-value=0.008 Score=60.67 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=71.6
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
..++|+...+.++.+.+..... ...-|.|+|.+|+||+++|+.+...... .-..-+.+++... +...+...++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~---~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~-~~~~~~~~lfg 79 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP---LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAAL-NENLLDSELFG 79 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCC-CHHHHHHHHcc
Confidence 3588999999999888876543 2234669999999999999998752110 1111223344432 22222222221
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecCc
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTRL 301 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 301 (581)
.-.+....... .....+. ....=.|+|||+..........+...+..+. ...+||.||..
T Consensus 80 ~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 11110000000 0000111 1122357899998777666777776664322 13588888763
No 223
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.67 E-value=0.023 Score=49.94 Aligned_cols=105 Identities=21% Similarity=0.116 Sum_probs=56.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
.+++|.|+.|.|||||++.+.... ......+|+.-.. .+.-- .+-+..+...-.+.+.+-.++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 488999999999999999998742 2223334332100 00000 001111222223445555677
Q ss_pred eEEEEecccc-cchhhHHHHhhhcCCCCCCcEEEEecCchhHHHh
Q 043779 264 YLLVLDDVWN-EDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASI 307 (581)
Q Consensus 264 ~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 307 (581)
-++++|+.-. .+......+...+... +..||++|.+.+....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 7999998732 2334444444444432 2467777776655543
No 224
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.66 E-value=0.025 Score=51.00 Aligned_cols=115 Identities=19% Similarity=0.084 Sum_probs=58.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEE-------EecCCCcH--hHHHHHHHHhhCCCCCCcCCHHHHHHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWV-------FVFEDFNV--RRLMTDIITSSGGNVSEAWNLDLLQRR 254 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv-------~v~~~~~~--~~l~~~il~~l~~~~~~~~~~~~l~~~ 254 (581)
.+++|+|+.|.|||||++.+..-... ....+++ .+.+.... ..+...+.-. ....-...+...-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 48899999999999999999874221 1111111 12222211 1222222110 11111122222234
Q ss_pred HHHHhcCcceEEEEecccc-cchhhHHHHhhhcCCCCCCcEEEEecCchhHHH
Q 043779 255 LKDMLDGKRYLLVLDDVWN-EDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVAS 306 (581)
Q Consensus 255 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 306 (581)
+.+.+-.++=++++|+.-. .+......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 4455556777889998732 2333333344444322 356777777766543
No 225
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.62 E-value=0.0073 Score=55.99 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=48.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEec-CCCcHhHHHHHHHHhhCCCCC---CcCCHHH-HHHHHHH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVF-EDFNVRRLMTDIITSSGGNVS---EAWNLDL-LQRRLKD 257 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~l~~~il~~l~~~~~---~~~~~~~-l~~~l~~ 257 (581)
++++.++|+.|+||||.+-+++.....+ -..+..++.. ......+-++...+.++.+.. ...+..+ +.+.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999998877777643333 2234455543 222345556666777664321 1223333 3334444
Q ss_pred HhcCcceEEEEeccc
Q 043779 258 MLDGKRYLLVLDDVW 272 (581)
Q Consensus 258 ~l~~k~~LlVlDdv~ 272 (581)
.-.++.=++++|=..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322334577788764
No 226
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.61 E-value=0.0088 Score=57.42 Aligned_cols=50 Identities=24% Similarity=0.192 Sum_probs=36.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCC----cCceeEEEecCCCcHhHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRH----FEFRIWVFVFEDFNVRRLM 231 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~l~ 231 (581)
.-.++.|+|++|+|||+|+.+++........ -..++|++....++..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 4578999999999999999999753222221 2568899988777655443
No 227
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.60 E-value=0.012 Score=65.80 Aligned_cols=134 Identities=19% Similarity=0.138 Sum_probs=73.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
..++|+...+..+.+.+..... ...-|.|+|.+|+|||++|+.+.+.... .. ...+.+++..-. ...+-..++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~---~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~~-~~~~~~~lfg 449 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ---SDSTVLILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAMP-AGLLESDLFG 449 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC---CCCCEEEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccCC-hhHhhhhhcC
Confidence 3689999999998877765432 2235669999999999999999873211 11 122334444322 1111111111
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecCc
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTRL 301 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 301 (581)
...+....... .....+. ....=.|+||++..........+...+..+. .+.+||.||..
T Consensus 450 ~~~~~~~g~~~--~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 450 HERGAFTGASA--QRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred ccccccccccc--chhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11111111000 0011111 1223469999998777666677776664321 34588888863
No 228
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.60 E-value=0.0073 Score=64.58 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=55.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
+..+++.++|++|.||||||.-++++ ..|. ++=|+.|+.-+...+-..|...+....... ..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGYs-VvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ad 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGYS-VVEINASDERTAPMVKEKIENAVQNHSVLD-------------AD 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCce-EEEecccccccHHHHHHHHHHHHhhccccc-------------cC
Confidence 45789999999999999999999873 2232 334566666555555444444432221100 02
Q ss_pred CcceEEEEecccccchhhHHHHhhhcC
Q 043779 261 GKRYLLVLDDVWNEDQEKWDQLKCTLT 287 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~~~~~~~l~~~l~ 287 (581)
+++.-||+|.+........+.+...+.
T Consensus 386 srP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCcceEEEecccCCcHHHHHHHHHHHH
Confidence 578889999996655444555555443
No 229
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.59 E-value=0.012 Score=54.76 Aligned_cols=80 Identities=25% Similarity=0.266 Sum_probs=44.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCc---eeEEEecCCCcHhHHHHHHHHhh----CCCCCCcCCHHHHHHHHHH
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF---RIWVFVFEDFNVRRLMTDIITSS----GGNVSEAWNLDLLQRRLKD 257 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~---~~wv~v~~~~~~~~l~~~il~~l----~~~~~~~~~~~~l~~~l~~ 257 (581)
||+|.|++|+||||+|+.+...... ..... ...++............. -... ....+...+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6899999999999999999873221 12221 222222222222222111 1111 1123456678888888887
Q ss_pred HhcCcceEE
Q 043779 258 MLDGKRYLL 266 (581)
Q Consensus 258 ~l~~k~~Ll 266 (581)
...++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 766665443
No 230
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.59 E-value=0.015 Score=54.04 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=53.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHh----
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDML---- 259 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l---- 259 (581)
++..|.|++|+||||++..+.......+ ..+.+......-...+... .+.. ..+. ...+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~L~~~----~~~~---a~Ti---~~~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKELREK----TGIE---AQTI---HSFLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHHHHHH----HTS----EEEH---HHHTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHHHHHh----hCcc---hhhH---HHHHhcCCcccc
Confidence 5788999999999999998876333221 2222222222122222222 1110 0000 00000000
Q ss_pred -----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh
Q 043779 260 -----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK 303 (581)
Q Consensus 260 -----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 303 (581)
..+.-+||+|++...+...+..+...... .|+++|+.--..+
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 13446999999987777777777776664 4678887665333
No 231
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.59 E-value=0.0032 Score=62.58 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=54.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCC-----CCCcCCHHHHHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN-----VSEAWNLDLLQRRL 255 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~-----~~~~~~~~~l~~~l 255 (581)
+.-+++-|+|++|+||||||.+++... ...-..++|+...+.++.. .+..++.. .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 355788999999999999999987632 2233457788887766653 23333321 11233455666666
Q ss_pred HHHhc-CcceEEEEeccc
Q 043779 256 KDMLD-GKRYLLVLDDVW 272 (581)
Q Consensus 256 ~~~l~-~k~~LlVlDdv~ 272 (581)
...++ +..-++|+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55554 456799999973
No 232
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0056 Score=56.72 Aligned_cols=78 Identities=27% Similarity=0.322 Sum_probs=44.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN-VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
.+.+|+|.|.+|+||||+|+.++. .....+ ..-++...-+. ....-..--.......+.+.+.+-+.+.|...+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHc
Confidence 568999999999999999999998 333331 11112111111 0100000001111223456677888888888888
Q ss_pred Ccc
Q 043779 261 GKR 263 (581)
Q Consensus 261 ~k~ 263 (581)
+++
T Consensus 83 g~~ 85 (218)
T COG0572 83 GKP 85 (218)
T ss_pred CCc
Confidence 877
No 233
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.072 Score=49.75 Aligned_cols=170 Identities=19% Similarity=0.160 Sum_probs=90.7
Q ss_pred cccc-hhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 159 VYGR-EEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 159 ~vGR-~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
++|. +..+++|.+.+.-+. -+-.+++-+.++|++|.|||-||+.|+++ ..+.|+.+|.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 4554 667777766554322 12245677889999999999999999973 23456667644 2
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHh-cCcceEEEEeccccc-----------chhh---HHHHhhhcC--CCCCC
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDML-DGKRYLLVLDDVWNE-----------DQEK---WDQLKCTLT--CGSKG 292 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~---~~~l~~~l~--~~~~g 292 (581)
+.+..+.. ...+.+.+.-.. ..-+.+|+.|.+.+. +.+. .-.+...+. ...+.
T Consensus 217 lvqk~ige----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 LVQKYIGE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHHhhh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 22222111 112222222222 245778888887431 1111 112222333 22356
Q ss_pred cEEEEecCchhHHHhh-----CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHH
Q 043779 293 SSVVVTTRLAKVASIV-----GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKE 349 (581)
Q Consensus 293 s~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~ 349 (581)
-+||+.|..-++.... .....++..+-+++.-.++++-+...-+-...-++..++.+
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaek 348 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEK 348 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHh
Confidence 6888888755543321 12235777777777777777765543333333344444433
No 234
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.011 Score=60.64 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..++.++|++|+||||++..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 235
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.026 Score=51.17 Aligned_cols=120 Identities=21% Similarity=0.158 Sum_probs=59.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC--CCcHhHHHHHHHHhhCCCC--CCc------CCHHHHH-
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE--DFNVRRLMTDIITSSGGNV--SEA------WNLDLLQ- 252 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~--~~~~~~l~~~il~~l~~~~--~~~------~~~~~l~- 252 (581)
.+++|.|+.|.|||||.+.++.-. ......+++.-.. ....... ...+..+.... ... .+..+.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 488999999999999999998732 1223333321100 0001111 00000000000 000 1112212
Q ss_pred HHHHHHhcCcceEEEEecccc-cchhhHHHHhhhcCCCCCCcEEEEecCchhHHHh
Q 043779 253 RRLKDMLDGKRYLLVLDDVWN-EDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASI 307 (581)
Q Consensus 253 ~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 307 (581)
-.+...+-.++-+++||+... .|......+...+.....+..||++|.+......
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 234445556778999999743 2333334444444322235678888887766544
No 236
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.51 E-value=0.025 Score=58.92 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=22.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDD 207 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 207 (581)
.+.+|.++|.+|+||||++..++...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999999988743
No 237
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.50 E-value=0.016 Score=58.42 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=67.6
Q ss_pred cccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcc-ccCCcCceeEEEecCCCcHhHHHHH-HHH
Q 043779 159 VYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDR-IKRHFEFRIWVFVFEDFNVRRLMTD-IIT 236 (581)
Q Consensus 159 ~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~l~~~-il~ 236 (581)
++|....+.++.+.+..... .-.-|.|+|.+|+||+++|+.+.+... ....| +-|++..-. ...+.. ++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~---~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pf---v~vnc~~~~--~~~l~~~lfG 72 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP---LDRPVLIIGERGTGKELIAARLHYLSKRWQGPL---VKLNCAALS--ENLLDSELFG 72 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHhcCccCCCe---EEEeCCCCC--hHHHHHHHhc
Confidence 46777778888777765443 223466999999999999999876321 11111 233333221 122222 111
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecC
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTR 300 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 300 (581)
.-.+........ ....+. ....=.|+||++..........+...+..+. ...+||.||.
T Consensus 73 ~~~g~~~ga~~~--~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~ 142 (329)
T TIGR02974 73 HEAGAFTGAQKR--HQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATN 142 (329)
T ss_pred cccccccCcccc--cCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEech
Confidence 110111110000 000011 1233468999997776666666666664322 2358888886
No 238
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.49 E-value=0.019 Score=51.61 Aligned_cols=117 Identities=16% Similarity=0.061 Sum_probs=60.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC--CCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE--DFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~--~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
.+++|.|+.|.|||||.+.+..-. ......+++.-.. ..+...... ..++. ..+-...+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHhc
Confidence 488999999999999999998632 2233344432111 011111111 01110 00111122222334455556
Q ss_pred cceEEEEecccc-cchhhHHHHhhhcCCC-CCCcEEEEecCchhHHHh
Q 043779 262 KRYLLVLDDVWN-EDQEKWDQLKCTLTCG-SKGSSVVVTTRLAKVASI 307 (581)
Q Consensus 262 k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 307 (581)
++-++++|+.-. .+......+...+... ..+..||++|.+......
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 778899999743 2334444444444321 236678888887664433
No 239
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0021 Score=55.78 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=25.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeE
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIW 218 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w 218 (581)
.--|+|.|+||+||||+++.+.+..+..+ |...-+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvgGf 39 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YKVGGF 39 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-ceeeeE
Confidence 34578999999999999999998443332 655433
No 240
>PRK08233 hypothetical protein; Provisional
Probab=96.49 E-value=0.0095 Score=54.59 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+|+|.|.+|+||||||..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 241
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.48 E-value=0.0068 Score=58.64 Aligned_cols=86 Identities=20% Similarity=0.206 Sum_probs=51.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCc-eeEEEecCCCc-HhHHHHHHHHhhCCC-------CCCcCCHH-----
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF-RIWVFVFEDFN-VRRLMTDIITSSGGN-------VSEAWNLD----- 249 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~-~~~l~~~il~~l~~~-------~~~~~~~~----- 249 (581)
.-++|.|.+|+|||||++.+++ .+..+|.. ++++.+++... +.++...+...-... ..+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3577999999999999999998 44445544 45666666544 445555554321111 01111111
Q ss_pred HHHHHHHHHh--c-CcceEEEEecc
Q 043779 250 LLQRRLKDML--D-GKRYLLVLDDV 271 (581)
Q Consensus 250 ~l~~~l~~~l--~-~k~~LlVlDdv 271 (581)
...-.+.+++ + ++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1112234444 3 88999999999
No 242
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.47 E-value=0.022 Score=56.30 Aligned_cols=137 Identities=24% Similarity=0.292 Sum_probs=72.3
Q ss_pred ccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCc-cccCCcCcee----EEEecCCCc--------
Q 043779 160 YGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDD-RIKRHFEFRI----WVFVFEDFN-------- 226 (581)
Q Consensus 160 vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~F~~~~----wv~v~~~~~-------- 226 (581)
-+|..+..--+++|..+ .+..|.+.|.+|.|||.||.+..-.. ..++.|...+ -+.++++..
T Consensus 227 ~prn~eQ~~ALdlLld~-----dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 227 RPRNAEQRVALDLLLDD-----DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred CcccHHHHHHHHHhcCC-----CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 34666666677777753 67899999999999999886643321 1223333322 223333321
Q ss_pred -HhHHHHHHHHhhCCC-CCCcCCHHHHHHHHH---------HHhcCc---ceEEEEecccccchhhHHHHhhhcCCCCCC
Q 043779 227 -VRRLMTDIITSSGGN-VSEAWNLDLLQRRLK---------DMLDGK---RYLLVLDDVWNEDQEKWDQLKCTLTCGSKG 292 (581)
Q Consensus 227 -~~~l~~~il~~l~~~-~~~~~~~~~l~~~l~---------~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 292 (581)
+.-=.+.|...+..- .........+...+. .+++|+ +-++|+|.+.+-.+. .++..+...+.|
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR~G~G 378 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTRAGEG 378 (436)
T ss_pred hccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHhccCC
Confidence 000111222111100 001111222222221 123443 468999999776544 355555667899
Q ss_pred cEEEEecCchhH
Q 043779 293 SSVVVTTRLAKV 304 (581)
Q Consensus 293 s~iivTtr~~~v 304 (581)
|||+.|-...++
T Consensus 379 sKIVl~gd~aQi 390 (436)
T COG1875 379 SKIVLTGDPAQI 390 (436)
T ss_pred CEEEEcCCHHHc
Confidence 999999874433
No 243
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.45 E-value=0.0021 Score=58.15 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=56.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCcccc-CCcCceeEEEecCCCc---HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIK-RHFEFRIWVFVFEDFN---VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDM 258 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~~---~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~ 258 (581)
..++.+.|+.|+|||.||+.+.. ... +.....+-++.+.-.. ....+....... .. . ...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~----~~--~-------v~~- 66 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSP----PG--Y-------VGA- 66 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHT----TC--H-------HHH-
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhcc----cc--e-------eec-
Confidence 46788999999999999999987 333 2333333334332222 111111111111 00 0 000
Q ss_pred hcCcceEEEEecccccch-----------hhHHHHhhhcCCC----C-------CCcEEEEecCch
Q 043779 259 LDGKRYLLVLDDVWNEDQ-----------EKWDQLKCTLTCG----S-------KGSSVVVTTRLA 302 (581)
Q Consensus 259 l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~----~-------~gs~iivTtr~~ 302 (581)
...-+|+||++..... ..|+.+...+..+ . .++-+|.||...
T Consensus 67 --~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 67 --EEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp --HHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred --cchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 1112999999988777 7788877766422 1 344566666633
No 244
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.42 E-value=0.0081 Score=59.75 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=54.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCC-----CCcCCHHHHHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNV-----SEAWNLDLLQRRL 255 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~-----~~~~~~~~l~~~l 255 (581)
+.-+++-|+|++|+||||||.+++... ...-..++|+...+.++.. .+..++... ....+.++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 455789999999999999999887632 2233456788776666543 233333221 1223455555555
Q ss_pred HHHhc-CcceEEEEeccc
Q 043779 256 KDMLD-GKRYLLVLDDVW 272 (581)
Q Consensus 256 ~~~l~-~k~~LlVlDdv~ 272 (581)
...++ +..-++|+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55554 456799999983
No 245
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.039 Score=59.35 Aligned_cols=134 Identities=15% Similarity=0.079 Sum_probs=76.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
...+.+.++|++|.|||.||+++++ ....+| +.+... . ++...-+ .....+........+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~----~----l~sk~vG-----esek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS----E----LLSKWVG-----ESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH----H----Hhccccc-----hHHHHHHHHHHHHHc
Confidence 3556788999999999999999998 333333 222211 1 1111111 112223333334445
Q ss_pred CcceEEEEeccccc-----c------hhhHHHHhhhcC--CCCCCcEEEEecCchhHHHhh-----CCCCeeeCCCCChH
Q 043779 261 GKRYLLVLDDVWNE-----D------QEKWDQLKCTLT--CGSKGSSVVVTTRLAKVASIV-----GTLPVYRLSDLSED 322 (581)
Q Consensus 261 ~k~~LlVlDdv~~~-----~------~~~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~ 322 (581)
..+..|++|++... . ......+...+. ....+..||-||..+...... .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78899999998321 0 122334444443 223344566666655443321 11347888899999
Q ss_pred hHHHHHHhhhcC
Q 043779 323 DCWLLFKQRAFG 334 (581)
Q Consensus 323 e~~~lf~~~a~~ 334 (581)
+..+.|+.+...
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999988753
No 246
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.027 Score=57.29 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=49.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC--cHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF--NVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
-.++.++|++|+||||++..+............+..++. +.+ ...+-+....+.++.......+..++...+.+ +.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT-DSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-ccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 468899999999999999999873211111123344442 232 23344444455555443333333344444443 34
Q ss_pred CcceEEEEeccccc
Q 043779 261 GKRYLLVLDDVWNE 274 (581)
Q Consensus 261 ~k~~LlVlDdv~~~ 274 (581)
++ -++++|.....
T Consensus 215 ~~-DlVLIDTaG~~ 227 (374)
T PRK14722 215 NK-HMVLIDTIGMS 227 (374)
T ss_pred CC-CEEEEcCCCCC
Confidence 43 56679988543
No 247
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.41 E-value=0.0024 Score=67.33 Aligned_cols=48 Identities=31% Similarity=0.391 Sum_probs=39.2
Q ss_pred ccccchhhHHHHHHHHhcCcC-CCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 158 EVYGREEDKEKIVERLVKDVA-GSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+++|.++.+++|++.|..... ....-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999943321 123457999999999999999999986
No 248
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.40 E-value=0.015 Score=58.16 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=40.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCcccc----CCcCceeEEEecCCCcHhHHHHHHHHhhC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIK----RHFEFRIWVFVFEDFNVRRLMTDIITSSG 239 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~l~~~il~~l~ 239 (581)
..-.++-|+|++|+|||+|+.+++-..... ..=..++|++....|++.++.+ +++.++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 345788999999999999998876422221 1113578999998888887754 455554
No 249
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.40 E-value=0.031 Score=50.89 Aligned_cols=103 Identities=15% Similarity=0.002 Sum_probs=55.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEE------ecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVF------VFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKD 257 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~------v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~ 257 (581)
.+++|+|+.|.|||||.+.+..-.. .....+++. +.+... -+..+.-.-.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 4899999999999999999986321 222333221 111100 1111222223445
Q ss_pred HhcCcceEEEEecccc-cchhhHHHHhhhcCCC--CCCcEEEEecCchhHHHh
Q 043779 258 MLDGKRYLLVLDDVWN-EDQEKWDQLKCTLTCG--SKGSSVVVTTRLAKVASI 307 (581)
Q Consensus 258 ~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~ 307 (581)
.+..++-++++|+.-. .+......+...+... ..+..||++|.+......
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 5556778999998732 2333333333333321 122567777776665543
No 250
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.37 E-value=0.023 Score=51.67 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||.+.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48899999999999999999873
No 251
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.37 E-value=0.019 Score=61.92 Aligned_cols=135 Identities=15% Similarity=0.150 Sum_probs=75.2
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il 235 (581)
...++|+...+.++.+.+..... ...-|.|+|.+|+|||++|+.+.+... ..-...+.|++..-.+ ..+...++
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~---~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~lf 259 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA---SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESELF 259 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHhc
Confidence 45789999999999988876543 233566999999999999999987321 1111223445544322 11111221
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecCc
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTRL 301 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 301 (581)
....+....... . ....+ +. .+ .=.|+||++..........+...+..+. ...+||.||..
T Consensus 260 G~~~g~~~ga~~-~-~~g~~-~~-a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 260 GHVKGAFTGAIS-N-RSGKF-EL-AD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred CccccccCCCcc-c-CCcch-hh-cC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 111111111100 0 00001 11 12 2247899998777777777777665332 24588888863
No 252
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.37 E-value=0.037 Score=53.29 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+..|+|++|+|||+|+..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5578999999999999998763
No 253
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.032 Score=62.26 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=71.7
Q ss_pred ccccchhhHHHHHHHHhcCcCCC---CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH
Q 043779 158 EVYGREEDKEKIVERLVKDVAGS---DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 234 (581)
.++|-++.+..|.+.+.....+. .......+.|+.|+|||-||+.+.. -+-+..+..+-+..+ +...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDms------e~~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMS------EFQE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechh------hhhh--
Confidence 46788888888888877654221 1456678999999999999999887 333333333333332 2222
Q ss_pred HHhhCCCCCCcCCHHHHHHHHHHHhcCcc-eEEEEecccccchhhHHHHhhhcCCC
Q 043779 235 ITSSGGNVSEAWNLDLLQRRLKDMLDGKR-YLLVLDDVWNEDQEKWDQLKCTLTCG 289 (581)
Q Consensus 235 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~ 289 (581)
...+.+.++.-... +....|.+.++.++ .+|.||||...+......+...+..+
T Consensus 633 vskligsp~gyvG~-e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGK-EEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCcccccc-hhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 22332322211111 11224555555555 47779999888877777676666543
No 254
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.33 E-value=0.012 Score=56.49 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHhhhhhhHHHHHH
Q 043779 4 AILQVVLDNLNSLIKNELGLLHGVEKEMEKLSSTLSTIQAVLEDA-EEKQLKDKALQNWLRKLKDAAYEVDDLLDEYK 80 (581)
Q Consensus 4 ~~v~~~~~kl~s~l~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a-~~~~~~~~~~~~wl~~lr~~ayd~eD~ld~~~ 80 (581)
+.|.+++++|..+.......+.-++.+++-++.+++.+|.||... +..+...+....+..++-..||++|+++|-+.
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 457888999998888888888889999999999999999999987 44344444588899999999999999999653
No 255
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.33 E-value=0.019 Score=54.84 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+...+++|.|++|+|||||++.+..-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 256
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.32 E-value=0.019 Score=55.11 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=52.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCC------------------
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNV------------------ 242 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~------------------ 242 (581)
+.-.++.|+|.+|+|||+|+.++.... . .+=..++|++..+. ..++...+ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~-~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-L-KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-H-hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 356788999999999999999986531 1 12345678887654 34444443 2222110
Q ss_pred --CCcCCHHHHHHHHHHHhcC-cceEEEEeccc
Q 043779 243 --SEAWNLDLLQRRLKDMLDG-KRYLLVLDDVW 272 (581)
Q Consensus 243 --~~~~~~~~l~~~l~~~l~~-k~~LlVlDdv~ 272 (581)
......+.+...+...+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335555666666653 56689999984
No 257
>PRK09354 recA recombinase A; Provisional
Probab=96.31 E-value=0.011 Score=59.43 Aligned_cols=85 Identities=19% Similarity=0.133 Sum_probs=55.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCC-----CCcCCHHHHHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNV-----SEAWNLDLLQRRL 255 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~-----~~~~~~~~l~~~l 255 (581)
+.-+++-|+|++|+||||||.+++... ...-..++|+.....++.. .+..++... ....+.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 455789999999999999999987632 2333557788887777753 233343221 1223455555555
Q ss_pred HHHhc-CcceEEEEeccc
Q 043779 256 KDMLD-GKRYLLVLDDVW 272 (581)
Q Consensus 256 ~~~l~-~k~~LlVlDdv~ 272 (581)
...++ +..-+||+|.+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 456799999983
No 258
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.31 E-value=0.05 Score=55.11 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=60.0
Q ss_pred CeEEEEEEecCCCcHHH-HHHHHhcCccccCCcCceeEEEecCCC--cHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTT-LAQLVFNDDRIKRHFEFRIWVFVFEDF--NVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDM 258 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~ 258 (581)
+.++|.++|+.|||||| ||+..+.-....++. .+..++.. .+ ...+-++...+-++.+.....+..++...+..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-kVaiITtD-tYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-KVAIITTD-TYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCc-ceEEEEec-cchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 36899999999999995 777666532122222 33444432 23 333445555555666665666777777766654
Q ss_pred hcCcceEEEEeccccc--chhhHHHHhhhcCCC
Q 043779 259 LDGKRYLLVLDDVWNE--DQEKWDQLKCTLTCG 289 (581)
Q Consensus 259 l~~k~~LlVlDdv~~~--~~~~~~~l~~~l~~~ 289 (581)
++. =+|.+|-+... +......+...+...
T Consensus 280 -~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 280 -RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred -hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 333 46666766433 334445565555533
No 259
>PTZ00301 uridine kinase; Provisional
Probab=96.31 E-value=0.0071 Score=56.64 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998876
No 260
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.041 Score=52.48 Aligned_cols=121 Identities=21% Similarity=0.196 Sum_probs=66.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCcc-------ccC----Cc---CceeEEEecCCCc------H----------------
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDR-------IKR----HF---EFRIWVFVFEDFN------V---------------- 227 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~-------~~~----~F---~~~~wv~v~~~~~------~---------------- 227 (581)
.+++|+|+.|.|||||.+.+..-.+ +.+ .+ ..+.||+=...++ +
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5899999999999999999987211 000 01 1244554211111 1
Q ss_pred ------hHHHHHHHHhhCCC-----CCCcCCHHHHHH-HHHHHhcCcceEEEEecccc-cc---hhhHHHHhhhcCCCCC
Q 043779 228 ------RRLMTDIITSSGGN-----VSEAWNLDLLQR-RLKDMLDGKRYLLVLDDVWN-ED---QEKWDQLKCTLTCGSK 291 (581)
Q Consensus 228 ------~~l~~~il~~l~~~-----~~~~~~~~~l~~-~l~~~l~~k~~LlVlDdv~~-~~---~~~~~~l~~~l~~~~~ 291 (581)
.+...+.++.++.. .-...+..+.++ .+.+.|..++=|++||.--. .| ....-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 13334444444322 112233344444 45677888899999998532 12 22333333334333
Q ss_pred CcEEEEecCchhHHH
Q 043779 292 GSSVVVTTRLAKVAS 306 (581)
Q Consensus 292 gs~iivTtr~~~v~~ 306 (581)
|..||++|.+-+...
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 788999998765443
No 261
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.034 Score=57.01 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=58.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccC-CcC-ceeEEEecCCCcHh--HHHHHHHHhhCCCCCCcCCHHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKR-HFE-FRIWVFVFEDFNVR--RLMTDIITSSGGNVSEAWNLDLLQRRLKD 257 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~-~~~wv~v~~~~~~~--~l~~~il~~l~~~~~~~~~~~~l~~~l~~ 257 (581)
..+++.++|+.|+||||.+..++....... .-. .+..++. +.+... .-+....+.++.+.........+...+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 356899999999999999988876322211 112 2333333 333332 22555555555443444455666666655
Q ss_pred HhcCcceEEEEecccccc--hhhHHHHhhhcC
Q 043779 258 MLDGKRYLLVLDDVWNED--QEKWDQLKCTLT 287 (581)
Q Consensus 258 ~l~~k~~LlVlDdv~~~~--~~~~~~l~~~l~ 287 (581)
. .+.-++++|...... ......+...+.
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 3 345688999885443 223344544444
No 262
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.28 E-value=0.012 Score=66.10 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+..++.|+|+.|.|||||.+.+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 346889999999999999999865
No 263
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.041 Score=49.98 Aligned_cols=118 Identities=21% Similarity=0.211 Sum_probs=59.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhC---CC--CCCc--------CCHHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSG---GN--VSEA--------WNLDL 250 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~---~~--~~~~--------~~~~~ 250 (581)
.+++|+|+.|.|||||.+.++.... .....+++.-....... ..+...++ .. .... .+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 4889999999999999999987421 22233332110000000 00000000 00 0000 12222
Q ss_pred HH-HHHHHHhcCcceEEEEeccccc-chhhHHHHhhhcCCC-CCCcEEEEecCchhHHHh
Q 043779 251 LQ-RRLKDMLDGKRYLLVLDDVWNE-DQEKWDQLKCTLTCG-SKGSSVVVTTRLAKVASI 307 (581)
Q Consensus 251 l~-~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 307 (581)
.+ -.+...+..++=++++|+.-.. |......+...+... ..|..||++|.+......
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22 2355556677889999997332 333334444444321 235678888887765553
No 264
>PRK07667 uridine kinase; Provisional
Probab=96.27 E-value=0.0057 Score=56.72 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 166 KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+.+.+.+.... ++..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~---~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK---ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC---CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665543 35589999999999999999999873
No 265
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.26 E-value=0.016 Score=54.96 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|+|.|.+|+||||||+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 266
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.26 E-value=0.039 Score=53.75 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=66.0
Q ss_pred hHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEE---ecCCCcHhHHHHHH--HHhhC
Q 043779 165 DKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVF---VFEDFNVRRLMTDI--ITSSG 239 (581)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~l~~~i--l~~l~ 239 (581)
..+.++..|... ....-++|+|++|.|||||.+.+.... . .....+++. +.......++...+ +.+..
T Consensus 97 ~~~~~l~~l~~~----~~~~~~~i~g~~g~GKttl~~~l~~~~--~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 97 AADKLLPYLVRN----NRVLNTLIISPPQCGKTTLLRDLARIL--S-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD 169 (270)
T ss_pred cHHHHHHHHHhC----CCeeEEEEEcCCCCCHHHHHHHHhCcc--C-CCCceEEECCEEeecchhHHHHHHHhccccccc
Confidence 345555555532 245678999999999999999999732 2 222333331 11111112222111 00100
Q ss_pred --CCCCCcCCHHHHHHHHHHHhc-CcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHHh
Q 043779 240 --GNVSEAWNLDLLQRRLKDMLD-GKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASI 307 (581)
Q Consensus 240 --~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 307 (581)
....-..+... ...+...+. ..+-++++|.+. ....+..+...+. .|..+|+||.+..+...
T Consensus 170 ~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 170 VGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccchH-HHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 00000011111 111222222 478899999984 3444555555543 47789999997666443
No 267
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.25 E-value=0.035 Score=53.06 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=70.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC-----CCcHhHHHHHHHHhhCCCC------CCcCCHHHH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE-----DFNVRRLMTDIITSSGGNV------SEAWNLDLL 251 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~l~~~il~~l~~~~------~~~~~~~~l 251 (581)
-.+++|+|.+|.||||+++.+.. ....-...+++.-.+ .....+-..+++..++... +..-+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 35899999999999999999986 222223333333111 1123344556666655332 122233344
Q ss_pred HH-HHHHHhcCcceEEEEeccccc-chhhHHHHhhhcC--CCCCCcEEEEecCchhHHHhhCC
Q 043779 252 QR-RLKDMLDGKRYLLVLDDVWNE-DQEKWDQLKCTLT--CGSKGSSVVVTTRLAKVASIVGT 310 (581)
Q Consensus 252 ~~-~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~~~ 310 (581)
++ .+.+.+.-++-++|.|..-+. +...-.++...+. ....|-..+..|.+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 43 456667778999999987432 1111122332322 12245567777887888777654
No 268
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.25 E-value=0.031 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998873
No 269
>PRK14974 cell division protein FtsY; Provisional
Probab=96.23 E-value=0.036 Score=55.72 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=55.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc--HhHHHHHHHHhhCCCCC---CcCCHHH-HHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN--VRRLMTDIITSSGGNVS---EAWNLDL-LQRRL 255 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~il~~l~~~~~---~~~~~~~-l~~~l 255 (581)
...+|.++|++|+||||++..++.... ...+. ++.+. .+.+. ..+-+......++.... ...+... +...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 467999999999999998887776322 12232 22332 22222 22334455555543221 1122222 22333
Q ss_pred HHHhcCcceEEEEeccccc--chhhHHHHhhhcCCCCCCcEEEE
Q 043779 256 KDMLDGKRYLLVLDDVWNE--DQEKWDQLKCTLTCGSKGSSVVV 297 (581)
Q Consensus 256 ~~~l~~k~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iiv 297 (581)
........-++++|-.... +...++.+........+...++|
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLV 259 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFV 259 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEe
Confidence 3322222338999988654 23444555443332223334444
No 270
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.22 E-value=0.034 Score=53.04 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=30.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 234 (581)
.-.++.|.|++|+||||||.+++... .+.. ..+++++. ..+..+++..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeC--CCCHHHHHHHH
Confidence 34588999999999999987665532 1222 34556663 33445555554
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.21 E-value=0.032 Score=51.31 Aligned_cols=37 Identities=27% Similarity=0.204 Sum_probs=26.1
Q ss_pred EEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC
Q 043779 186 YPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED 224 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 224 (581)
+.|.|++|+|||+|+.++..... ..=..++|++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCC
Confidence 57999999999999999876422 22234667766443
No 272
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.20 E-value=0.029 Score=56.45 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=38.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCC----cCceeEEEecCCCcHhHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRH----FEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~l~~~ 233 (581)
.-.++-|+|++|+|||+++.+++........ =..++|++....++..++.+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 4578889999999999999999864222111 136789999888887776543
No 273
>PRK05439 pantothenate kinase; Provisional
Probab=96.20 E-value=0.029 Score=55.59 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=44.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCC--cCceeEEEecCCCcHhHHHHHHHHhh-CCCCCCcCCHHHHHHHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRH--FEFRIWVFVFEDFNVRRLMTDIITSS-GGNVSEAWNLDLLQRRLKD 257 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~l~~~il~~l-~~~~~~~~~~~~l~~~l~~ 257 (581)
...-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+.....+..- ..+ ....++.-+.+.+.+.|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 4678999999999999999998876 22211 1123333333222222222110 011 1123445677777777777
Q ss_pred HhcCcc
Q 043779 258 MLDGKR 263 (581)
Q Consensus 258 ~l~~k~ 263 (581)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666654
No 274
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.17 E-value=0.031 Score=58.38 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=46.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcH--hHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNV--RRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
+++.++|++|+||||++..++........-..+..++.. .+.. ..-+......++.......+..++...+... .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D-~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD-TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC-ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 589999999999999888876532201112234445442 2221 1223333333433332334455566556543 2
Q ss_pred cceEEEEecccc
Q 043779 262 KRYLLVLDDVWN 273 (581)
Q Consensus 262 k~~LlVlDdv~~ 273 (581)
..=++++|....
T Consensus 299 ~~DlVlIDt~G~ 310 (424)
T PRK05703 299 DCDVILIDTAGR 310 (424)
T ss_pred CCCEEEEeCCCC
Confidence 356888997643
No 275
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.15 E-value=0.0039 Score=53.37 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 043779 186 YPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~ 206 (581)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999873
No 276
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.13 E-value=0.1 Score=48.10 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=33.2
Q ss_pred HHHHHHHhcCcceEEEEeccccc-chhhHHHHhhhcC-CCCCCcEEEEecCchhHHHhhC
Q 043779 252 QRRLKDMLDGKRYLLVLDDVWNE-DQEKWDQLKCTLT-CGSKGSSVVVTTRLAKVASIVG 309 (581)
Q Consensus 252 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~iivTtr~~~v~~~~~ 309 (581)
.-.+.+.|.=++-++.||..-+. |++.-..+...+. -...|-..|+.|.....|..+.
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence 33566667777889999998432 3333333333333 2234556666666666666543
No 277
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.12 E-value=0.012 Score=55.51 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=58.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCC---cCCHHHHHHHHHHH-
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSE---AWNLDLLQRRLKDM- 258 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~---~~~~~~l~~~l~~~- 258 (581)
.+++.|+|+.|.|||||.+.+...... .....|+... ... ...+.++...+.....- ......-.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l---a~~G~~v~a~-~~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL---AHIGSFVPAD-SAT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH---HhCCCeeEcC-CcE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478889999999999999998742111 0111222211 110 01112222222221110 11111111122222
Q ss_pred -hcCcceEEEEecccccc-hhhH----HHHhhhcCCC-CCCcEEEEecCchhHHHhh
Q 043779 259 -LDGKRYLLVLDDVWNED-QEKW----DQLKCTLTCG-SKGSSVVVTTRLAKVASIV 308 (581)
Q Consensus 259 -l~~k~~LlVlDdv~~~~-~~~~----~~l~~~l~~~-~~gs~iivTtr~~~v~~~~ 308 (581)
+..++.|++||...... .... ..+...+... ..+..+|+||...+.+...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 23678999999985432 1111 1222233322 2345899999988887665
No 278
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.10 E-value=0.07 Score=55.55 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+.++.++|++|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999998887763
No 279
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.09 E-value=0.022 Score=57.78 Aligned_cols=108 Identities=20% Similarity=0.142 Sum_probs=64.8
Q ss_pred ccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHh
Q 043779 158 EVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITS 237 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~ 237 (581)
.++|+++....+...+... +-+.+.|++|+|||+||+.+.. ..... ..++.+.......+++....-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~-------~~vll~G~PG~gKT~la~~lA~--~l~~~---~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLAG-------GHVLLEGPPGVGKTLLARALAR--ALGLP---FVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHHcC-------CCEEEECCCCccHHHHHHHHHH--HhCCC---eEEEecCCCCCHHHhcCchhHh
Confidence 3788888888777776642 3567999999999999999997 33322 3456666666665554332221
Q ss_pred hCCCCCCcCCHHHHHHHHHHHhc-----CcceEEEEecccccchhhHHHHhhhcC
Q 043779 238 SGGNVSEAWNLDLLQRRLKDMLD-----GKRYLLVLDDVWNEDQEKWDQLKCTLT 287 (581)
Q Consensus 238 l~~~~~~~~~~~~l~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~ 287 (581)
...... .-..+.. .-+.++.+|.++......-..+...+.
T Consensus 93 ~~~~~~----------~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 93 ALLLEP----------GEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred hhhccC----------CeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 110000 0000001 111599999998877666666666554
No 280
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.11 Score=53.11 Aligned_cols=150 Identities=13% Similarity=0.036 Sum_probs=77.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
|--.++||||.|||+++.++++.. .|+.. =+..+.. .+..++.+.|.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~ydIy-dLeLt~v---------------------~~n~dLr~LL~~--t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYDIY-DLELTEV---------------------KLDSDLRHLLLA--TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCceE-Eeeeccc---------------------cCcHHHHHHHHh--CCCC
Confidence 445699999999999999999842 23221 1111111 111222222221 2356
Q ss_pred eEEEEeccccc------------------chhhHHHHhhhcC--CCCC-CcE-EEEecCchhHHHh--hCC---CCeeeC
Q 043779 264 YLLVLDDVWNE------------------DQEKWDQLKCTLT--CGSK-GSS-VVVTTRLAKVASI--VGT---LPVYRL 316 (581)
Q Consensus 264 ~LlVlDdv~~~------------------~~~~~~~l~~~l~--~~~~-gs~-iivTtr~~~v~~~--~~~---~~~~~l 316 (581)
-+||+.|+... ....+..|...+. +.+. +-| ||.||...+-... +.. ...+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 77788887421 0012233443333 1122 224 5667775443222 111 225677
Q ss_pred CCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhh
Q 043779 317 SDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSL 367 (581)
Q Consensus 317 ~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~ 367 (581)
.-=+.+.-..|+.+...... ++ .+..+|.+...|.-+.=..++..
T Consensus 368 gyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHH
Confidence 77788888888888775433 12 44556666555554444334433
No 281
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.08 E-value=0.044 Score=60.97 Aligned_cols=129 Identities=18% Similarity=0.135 Sum_probs=70.6
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcc-ccCCcCceeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDR-IKRHFEFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~l~~~il 235 (581)
+.++|....+.++.+.+..... ... -|.|+|.+|+||+++|+.+.+... .... -+.|++..-. ...+...++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~--~~~-pvli~Ge~GtGK~~~A~~ih~~s~r~~~p---fv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK--SSF-PVLLCGEEGVGKALLAQAIHNESERAAGP---YIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC--cCC-CEEEECCCCcCHHHHHHHHHHhCCccCCC---eEEEECCCCC-hHHHHHHhc
Confidence 4578999888888887765433 223 366999999999999999987321 1111 2233333322 122222232
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecC
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTR 300 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 300 (581)
....+..... .. ..+. ....=.|+||++..........|...+..+. ...+||.||.
T Consensus 398 g~~~~~~~~~-~~----g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~ 465 (638)
T PRK11388 398 GSDRTDSENG-RL----SKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTT 465 (638)
T ss_pred CCCCcCccCC-CC----Ccee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEecc
Confidence 2111100000 00 0000 1123468999998777777777777665332 1346777776
No 282
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.066 Score=50.48 Aligned_cols=93 Identities=28% Similarity=0.329 Sum_probs=56.4
Q ss_pred ccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 158 EVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
++=|-.++++++.+...-+- -+-+.++-|.++|++|.|||-+|++|+| +....|- .|-.+ +
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfi-----rvigs----e 246 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFI-----RVIGS----E 246 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEE-----eehhH----H
Confidence 34567788888777654321 1224566778999999999999999999 5555443 22111 1
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC-cceEEEEecc
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG-KRYLLVLDDV 271 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~-k~~LlVlDdv 271 (581)
+.+... + ....+.+.|.+..+. |-++|+||.+
T Consensus 247 lvqkyv----g------egarmvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 247 LVQKYV----G------EGARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred HHHHHh----h------hhHHHHHHHHHHhcccceEEEEeecc
Confidence 222111 1 123344555555555 5588889987
No 283
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.08 E-value=0.064 Score=53.62 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=33.7
Q ss_pred eeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHH
Q 043779 313 VYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 313 ~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai 361 (581)
++++++++.+|+..++....-..-......-+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877644332211222345667777779998644
No 284
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.08 E-value=0.034 Score=56.08 Aligned_cols=57 Identities=23% Similarity=0.181 Sum_probs=40.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCcccc---C-CcCceeEEEecCCCcHhHHHHHHHHhhC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIK---R-HFEFRIWVFVFEDFNVRRLMTDIITSSG 239 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~l~~~il~~l~ 239 (581)
.-.++-|+|.+|+|||+|+..++-..... + .-..++|++....|++.++. +|++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 45788899999999999998877432211 1 11257899999988887764 4555554
No 285
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.06 E-value=0.039 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 286
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.03 E-value=0.042 Score=55.43 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=41.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCcccc----CCcCceeEEEecCCCcHhHHHHHHHHhhC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIK----RHFEFRIWVFVFEDFNVRRLMTDIITSSG 239 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~l~~~il~~l~ 239 (581)
..-.++-|+|++|+|||+|+.+++-..... +.-..++|++....|++.++.+ +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 345788899999999999999886432221 1123578999999999887755 455554
No 287
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.038 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999863
No 288
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.99 E-value=0.0058 Score=53.49 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 289
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.98 E-value=0.046 Score=52.51 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=33.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 233 (581)
..-.++.|.|++|+|||+||.++...- ...-..++|++... +..++...
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~--~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEEeeC--CHHHHHHH
Confidence 355788999999999999999876531 12344577887754 34444444
No 290
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.079 Score=53.63 Aligned_cols=89 Identities=15% Similarity=0.049 Sum_probs=53.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc--HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHh
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN--VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDML 259 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 259 (581)
..+++.|+|+.|+||||++..+....... . ..+.+++.. .+. ..+-+......++.......+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-g-~~V~lItaD-tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-N-RTVGFITTD-TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeCC-ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 46799999999999999999888642222 2 234455543 332 233445555555433333456666766665443
Q ss_pred c-CcceEEEEecccc
Q 043779 260 D-GKRYLLVLDDVWN 273 (581)
Q Consensus 260 ~-~k~~LlVlDdv~~ 273 (581)
. +..=++++|-...
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3446788888754
No 291
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.11 Score=55.64 Aligned_cols=182 Identities=19% Similarity=0.184 Sum_probs=93.0
Q ss_pred cCCccccchhhHH---HHHHHHhcCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcH
Q 043779 155 AQPEVYGREEDKE---KIVERLVKDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNV 227 (581)
Q Consensus 155 ~~~~~vGR~~~~~---~l~~~L~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 227 (581)
.-.++.|.++.++ ++++.|..+.. |..-++-+.++|+||.|||.||+++.....+ .| .+.|.+
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PF-----f~iSGS--- 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PF-----FSISGS--- 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--Cc-----eeccch---
Confidence 3456778876555 55666665431 2234566789999999999999999985433 22 122211
Q ss_pred hHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc----------chhhHH----HHhhhcCCCC--C
Q 043779 228 RRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE----------DQEKWD----QLKCTLTCGS--K 291 (581)
Q Consensus 228 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~----~l~~~l~~~~--~ 291 (581)
+.++.+-+ ...........+..+.-++++++|.+... ..+.++ ++........ .
T Consensus 218 -----~FVemfVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 218 -----DFVEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred -----hhhhhhcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 01111101 11122233334444556799999987421 112333 3333333222 3
Q ss_pred CcEEEEecCchhHHHhh----C-CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchH
Q 043779 292 GSSVVVTTRLAKVASIV----G-TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLA 360 (581)
Q Consensus 292 gs~iivTtr~~~v~~~~----~-~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLa 360 (581)
|-.|+..|..++|.... + -...+.++..+-..-.++++-++-.......-+ ...|++.+-|.-.|
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd----l~~iAr~tpGfsGA 357 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD----LKKIARGTPGFSGA 357 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC----HHHHhhhCCCcccc
Confidence 33444445555554321 1 123555655555666666665543332222222 22377777776554
No 292
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.031 Score=54.41 Aligned_cols=89 Identities=21% Similarity=0.099 Sum_probs=56.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCC-CCCCcCCHH---HHHHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGG-NVSEAWNLD---LLQRRLK 256 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~-~~~~~~~~~---~l~~~l~ 256 (581)
+.-+++=|+|+.|+||||+|.+++-... ..-..++|++.-+.+++..+..--...+.. -.....+.+ ++...+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 4668899999999999999999877433 333378899999989887664433221211 111222333 3333444
Q ss_pred HHhcCcceEEEEecc
Q 043779 257 DMLDGKRYLLVLDDV 271 (581)
Q Consensus 257 ~~l~~k~~LlVlDdv 271 (581)
.....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 443444679999998
No 293
>PRK10867 signal recognition particle protein; Provisional
Probab=95.96 E-value=0.086 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+.+|.++|++|+||||.+..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999997777765
No 294
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.94 E-value=0.039 Score=54.23 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=42.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCc-C-ceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF-E-FRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDM 258 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~-~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~ 258 (581)
..+.+|+|.|.+|+||||+|+.+.. ...... . .+..++...-+.....+...-..-....++..+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 3568999999999999999987754 121111 1 22333333222222222211000011234556667777777766
Q ss_pred hcCc
Q 043779 259 LDGK 262 (581)
Q Consensus 259 l~~k 262 (581)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 295
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.92 E-value=0.05 Score=54.64 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=39.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccC----CcCceeEEEecCCCcHhHHHHHHHHhh
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKR----HFEFRIWVFVFEDFNVRRLMTDIITSS 238 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~il~~l 238 (581)
.-.++-|+|++|+|||+++.+++....... .=..++||+....++..++.+ ++..+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 457889999999999999999976432211 112688999988888776543 44444
No 296
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.91 E-value=0.077 Score=52.13 Aligned_cols=52 Identities=19% Similarity=0.030 Sum_probs=34.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHh
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITS 237 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~ 237 (581)
-.++.|.|.+|+||||++.+++..... .+=..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~-~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLIT-QHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH-hcCceEEEEEccc--CHHHHHHHHHHH
Confidence 357889999999999999998774221 1123466777654 345555555544
No 297
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.90 E-value=0.0073 Score=59.11 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=25.1
Q ss_pred HHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 167 EKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 167 ~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+++.+... + +-+.++|++|+|||++++.....
T Consensus 23 ~~ll~~l~~~-----~-~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSN-----G-RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHC-----T-EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHc-----C-CcEEEECCCCCchhHHHHhhhcc
Confidence 4455655542 3 34569999999999999998863
No 298
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.89 E-value=0.15 Score=54.51 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++|+...+.++.+.+..... .-..+.|+|.+|+|||++|+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~---~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR---SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc---cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3588998888888877754332 2234679999999999999999873
No 299
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.87 E-value=0.015 Score=54.26 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=59.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCC---HHHHHHHHHHHh
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWN---LDLLQRRLKDML 259 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~---~~~l~~~l~~~l 259 (581)
..++.|.|+.|.||||+.+.+....-.. ....++.... ....+...|...++........ ...-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3689999999999999998886421100 1111221110 1112223333333322111111 111111122222
Q ss_pred --cCcceEEEEecccccc-hhh----HHHHhhhcCCCCCCcEEEEecCchhHHHhhCC
Q 043779 260 --DGKRYLLVLDDVWNED-QEK----WDQLKCTLTCGSKGSSVVVTTRLAKVASIVGT 310 (581)
Q Consensus 260 --~~k~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 310 (581)
..++-|+++|+..... ..+ ...+...+.. .++.+|++|...+++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 3567899999984321 111 1223333332 37799999999888877653
No 300
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.35 Score=45.37 Aligned_cols=49 Identities=31% Similarity=0.331 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 158 EVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
++=|.+-.++++.+...-+. -|-+.++-|.++|++|.|||.||++|.++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 45577777777776654321 12345677789999999999999999994
No 301
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.86 E-value=0.006 Score=45.93 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+|.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 302
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.82 E-value=0.0076 Score=56.71 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+|+|.|.+|+|||||++.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999873
No 303
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.016 Score=52.68 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999984
No 304
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.82 E-value=0.031 Score=60.28 Aligned_cols=133 Identities=15% Similarity=0.059 Sum_probs=70.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
+.++|....+.++.+.+..... .-.-|.|+|.+|+||+++|+.+.... .. .-..-+.+++..-. ...+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~---~~~pvlI~GE~GtGK~~lA~aiH~~s-~r-~~~pfv~inca~~~--~~~~e~--- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM---LDAPLLITGDTGTGKDLLAYACHLRS-PR-GKKPFLALNCASIP--DDVVES--- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC---CCCCEEEECCCCccHHHHHHHHHHhC-CC-CCCCeEEeccccCC--HHHHHH---
Confidence 3689999888888887764332 12246699999999999999976521 11 11122344444432 122221
Q ss_pred hhCCCCCCcC-CHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecCc
Q 043779 237 SSGGNVSEAW-NLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTRL 301 (581)
Q Consensus 237 ~l~~~~~~~~-~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 301 (581)
.+.+...... .......-+.+ ....=.|+||+++.........+...+..+. ...+||.||..
T Consensus 274 elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 274 ELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred HhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 1112111000 00000000011 1122357899998877666677776665421 13478887763
No 305
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.79 E-value=0.02 Score=59.02 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|++|+||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4889999999999999999865
No 306
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.75 E-value=0.035 Score=52.54 Aligned_cols=29 Identities=34% Similarity=0.378 Sum_probs=24.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccc
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRI 209 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 209 (581)
..+.+|.++||+|+||||..+.++.+...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 35667889999999999999999885433
No 307
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.051 Score=48.46 Aligned_cols=117 Identities=21% Similarity=0.140 Sum_probs=60.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc--HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN--VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
.+++|+|..|.|||||.+.+.... ......+++.-..... ..... ..+.-. .+-...+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~-~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYV-PQLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEE-eeCCHHHHHHHHHHHHHhc
Confidence 588999999999999999998732 2233444433211111 11111 111100 0011122222234455555
Q ss_pred cceEEEEeccccc-chhhHHHHhhhcCCC-CCCcEEEEecCchhHHHhh
Q 043779 262 KRYLLVLDDVWNE-DQEKWDQLKCTLTCG-SKGSSVVVTTRLAKVASIV 308 (581)
Q Consensus 262 k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~ 308 (581)
.+-++++|+.-.. |......+...+... ..+..+|++|.+.......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 6789999998432 333334444433311 1246788888877665553
No 308
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.75 E-value=0.023 Score=64.05 Aligned_cols=177 Identities=16% Similarity=0.128 Sum_probs=80.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCC---cCCHHHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSE---AWNLDLLQRRLKDM 258 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~---~~~~~~l~~~l~~~ 258 (581)
+.+++.|+|+.+.||||+.+.+.-..- -.....+|++.... ...++..|+..++....- ......-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~---maq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAAL---MAKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHH---HHHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 456888999999999999998854210 01112222322110 011111111122111110 01111111112222
Q ss_pred hc--CcceEEEEeccccc-chhhHHHH----hhhcCCCCCCcEEEEecCchhHHHhhCCCCeeeCCCCC-hHhHHHHHHh
Q 043779 259 LD--GKRYLLVLDDVWNE-DQEKWDQL----KCTLTCGSKGSSVVVTTRLAKVASIVGTLPVYRLSDLS-EDDCWLLFKQ 330 (581)
Q Consensus 259 l~--~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~-~~e~~~lf~~ 330 (581)
+. ..+-|+++|.+... ++..-..+ ...+. ..|+.+|+||...++.........+.-..+. ..+......+
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~~Yk 479 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLRPTYR 479 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCcEEEE
Confidence 22 46789999998542 22222222 22332 2477999999988877665433211110010 1111111111
Q ss_pred hhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccC
Q 043779 331 RAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFK 371 (581)
Q Consensus 331 ~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~ 371 (581)
...|. +. ...|-.|++++ |+|-.+.--|.-+...
T Consensus 480 l~~G~---~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 480 LLIGI---PG---KSNAFEIAKRL-GLPENIIEEAKKLIGE 513 (782)
T ss_pred EeeCC---CC---CcHHHHHHHHh-CcCHHHHHHHHHHHhh
Confidence 11111 11 14477788777 6787777666655433
No 309
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.74 E-value=0.083 Score=50.44 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=60.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCC---------C----------
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN---------V---------- 242 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~---------~---------- 242 (581)
.-.++.|.|.+|+|||||+.++..... ..-..++|++..... ..+... +.+++.. .
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~~--~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEESR--ESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCCH--HHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 456889999999999999998765321 223456787764433 333222 1111100 0
Q ss_pred -----CCcCCHHHHHHHHHHHhcC---cceEEEEeccccc---chhhHHHHhhhcC--CCCCCcEEEEecC
Q 043779 243 -----SEAWNLDLLQRRLKDMLDG---KRYLLVLDDVWNE---DQEKWDQLKCTLT--CGSKGSSVVVTTR 300 (581)
Q Consensus 243 -----~~~~~~~~l~~~l~~~l~~---k~~LlVlDdv~~~---~~~~~~~l~~~l~--~~~~gs~iivTtr 300 (581)
....+.+++...+++..+. +.-++|+|.+... .......+...+. -...|..+|+|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~ 164 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQ 164 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0123566666666665543 3458899987422 2111111111111 1235778888876
No 310
>PTZ00035 Rad51 protein; Provisional
Probab=95.73 E-value=0.09 Score=53.16 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=38.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCcccc---C-CcCceeEEEecCCCcHhHHHHHHHHhhC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIK---R-HFEFRIWVFVFEDFNVRRLMTDIITSSG 239 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~l~~~il~~l~ 239 (581)
..-.++.|+|++|+|||+|+..++-..... + .=..++|+.....++..++ .++.+.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 355789999999999999999887532211 1 1124568888777777664 33444443
No 311
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.38 Score=47.21 Aligned_cols=140 Identities=6% Similarity=-0.050 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC-CcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-
Q 043779 166 KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR-HFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS- 243 (581)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~- 243 (581)
-+++...+..+ .-.....++|+.|+||+++|..+....--.. ...+..| .-...+|... +.+...
T Consensus 6 ~~~L~~~i~~~----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~-~~~~HPD~~~--------i~p~~~~ 72 (290)
T PRK05917 6 WEALIQRVRDQ----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKI-SQKIHPDIHE--------FSPQGKG 72 (290)
T ss_pred HHHHHHHHHcC----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHH-hcCCCCCEEE--------EecCCCC
Confidence 34566666543 2334667999999999999988876321100 0000000 0000011000 000000
Q ss_pred CcCCHHHHHHHHHHHh-----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc-hhHHHh-hCCCCeeeC
Q 043779 244 EAWNLDLLQRRLKDML-----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-AKVASI-VGTLPVYRL 316 (581)
Q Consensus 244 ~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l 316 (581)
..-..++... +.+.+ .++.-++|+|++.......++.+...+....+++.+|++|.+ ..+... .+....+.+
T Consensus 73 ~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~ 151 (290)
T PRK05917 73 RLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHI 151 (290)
T ss_pred CcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEc
Confidence 0112333332 22222 245568899999988888999999988876666766666554 444433 334456677
Q ss_pred CCC
Q 043779 317 SDL 319 (581)
Q Consensus 317 ~~L 319 (581)
.++
T Consensus 152 ~~~ 154 (290)
T PRK05917 152 PME 154 (290)
T ss_pred cch
Confidence 765
No 312
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.72 E-value=0.055 Score=54.20 Aligned_cols=58 Identities=22% Similarity=0.163 Sum_probs=39.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCcccc---C-CcCceeEEEecCCCcHhHHHHHHHHhhC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIK---R-HFEFRIWVFVFEDFNVRRLMTDIITSSG 239 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~l~~~il~~l~ 239 (581)
..-.++.|+|.+|+|||+|+..++...... + .-..++|++....++..++ .++.+.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 356789999999999999999887522211 1 1124689998887777664 33444443
No 313
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.72 E-value=0.0091 Score=56.10 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|+|++|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999999987
No 314
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.033 Score=58.76 Aligned_cols=89 Identities=20% Similarity=0.116 Sum_probs=47.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcH--hHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHh
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNV--RRLMTDIITSSGGNVSEAWNLDLLQRRLKDML 259 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 259 (581)
...+++|+|++|+||||++..+............+..++. +.+.. ..-+......++.......+...+...+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt-DtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT-DTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec-ccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-
Confidence 3468999999999999999888763211111122333433 22221 2222222333332222333445555555543
Q ss_pred cCcceEEEEecccc
Q 043779 260 DGKRYLLVLDDVWN 273 (581)
Q Consensus 260 ~~k~~LlVlDdv~~ 273 (581)
. ..-+|++|....
T Consensus 427 ~-~~DLVLIDTaG~ 439 (559)
T PRK12727 427 R-DYKLVLIDTAGM 439 (559)
T ss_pred c-cCCEEEecCCCc
Confidence 3 355888898853
No 315
>PRK06762 hypothetical protein; Provisional
Probab=95.70 E-value=0.0083 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.461 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999987
No 316
>PRK06547 hypothetical protein; Provisional
Probab=95.69 E-value=0.015 Score=52.71 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999873
No 317
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.66 E-value=0.11 Score=48.68 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=35.6
Q ss_pred HHHhcCcceEEEEecccc-cchhhHHHHhhhcCC-CCCCcEEEEecCchhHHHhhCCCCeeeCCCCC
Q 043779 256 KDMLDGKRYLLVLDDVWN-EDQEKWDQLKCTLTC-GSKGSSVVVTTRLAKVASIVGTLPVYRLSDLS 320 (581)
Q Consensus 256 ~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~ 320 (581)
...+-.++-++++|+.-. .+......+...+.. ...|..||++|.+...... ..++.++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 139 ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 344455678999998732 233344444444432 1236678888887655443 4566666543
No 318
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.65 E-value=0.0088 Score=50.42 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHhcCccccCCcCc
Q 043779 186 YPIVGMGGLGKTTLAQLVFNDDRIKRHFEF 215 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~ 215 (581)
|.|+|.+|+||||+|+.+.. .....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 57999999999999999998 56666653
No 319
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.65 E-value=0.017 Score=54.91 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=35.4
Q ss_pred hHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc
Q 043779 165 DKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN 226 (581)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 226 (581)
+..++++.+.... ++..+|+|.|+||+|||||...+....+..++--.++=|.-|.+++
T Consensus 14 ~~~~ll~~l~~~~---g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHT---GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGT---T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhc---CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 4456666665543 3567999999999999999999887544333222233444444444
No 320
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.64 E-value=0.13 Score=47.15 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.|+.|.|||||.+.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 321
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.63 E-value=0.013 Score=57.16 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=18.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+.|.|+|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47889999999999999999874
No 322
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.63 E-value=0.1 Score=51.12 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=46.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh--HHHHHHHHhhCCCC---CCcCCH-HHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR--RLMTDIITSSGGNV---SEAWNL-DLLQRRL 255 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~--~l~~~il~~l~~~~---~~~~~~-~~l~~~l 255 (581)
..+++.++|++|+||||++..++... ...-..+.++.. +.+... +-+.......+... ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~-D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAG-DTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeC-CCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 56899999999999999998887632 222123344443 233222 22333334333211 111222 2223334
Q ss_pred HHHhcCcceEEEEecccc
Q 043779 256 KDMLDGKRYLLVLDDVWN 273 (581)
Q Consensus 256 ~~~l~~k~~LlVlDdv~~ 273 (581)
.....+..-++++|-...
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 443334456788887743
No 323
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.60 E-value=0.18 Score=47.21 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|.|+.|.|||||++.+..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4889999999999999999976
No 324
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.56 E-value=0.02 Score=52.30 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 325
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.55 E-value=0.01 Score=54.71 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+.++|.|.|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 326
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.54 E-value=0.12 Score=50.43 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=54.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC-cHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc-
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF-NVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD- 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~- 260 (581)
..+++++|.+|+||||++..+.... ...=..+.+++..... ....-+......++.......+...+...+...-.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 3589999999999999999887632 1111223444443221 12222233333333222223455566555544322
Q ss_pred CcceEEEEeccccc--chhhHHHHhhhcC
Q 043779 261 GKRYLLVLDDVWNE--DQEKWDQLKCTLT 287 (581)
Q Consensus 261 ~k~~LlVlDdv~~~--~~~~~~~l~~~l~ 287 (581)
.+.=++++|..... +....+.+...+.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 24568889988554 2344455544443
No 327
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.54 E-value=0.049 Score=55.43 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=59.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
..+.|.|+.|+||||+.+.+.. .+.......++. +.++.... .... ..+-...............++..++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~~--~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEYV--HRNK-RSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhhh--ccCc-cceEEccccCCCCcCHHHHHHHhhccCC
Confidence 5789999999999999999886 333334444442 32221110 0000 0000000001112235566777888889
Q ss_pred eEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHH
Q 043779 264 YLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVA 305 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 305 (581)
=.|++|.+. +...+...... ...|..++.|....+..
T Consensus 197 d~i~vgEir--d~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 197 DVILIGEMR--DLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CEEEEeCCC--CHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 999999994 44444432222 22455566666644443
No 328
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.54 E-value=0.13 Score=49.76 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||++.++.-
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999874
No 329
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.53 E-value=0.017 Score=54.88 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 043779 186 YPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~ 205 (581)
|.|.|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77999999999999999987
No 330
>PLN02348 phosphoribulokinase
Probab=95.52 E-value=0.073 Score=54.09 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+...+|+|.|.+|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 331
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.50 E-value=0.06 Score=52.58 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=48.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-------CcCCHHHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-------EAWNLDLLQR 253 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-------~~~~~~~l~~ 253 (581)
.+..++.|.|.+|+|||||+..+.+ .........+ + .....+..+ ...+...+.+.. -..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~~V-I-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPCAV-I-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCEEE-E-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4678999999999999999999987 3333332222 2 222222211 112232221110 1123444555
Q ss_pred HHHHHhcCcceEEEEecccc
Q 043779 254 RLKDMLDGKRYLLVLDDVWN 273 (581)
Q Consensus 254 ~l~~~l~~k~~LlVlDdv~~ 273 (581)
.+..+.....-++|++++.+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 56555444456888999854
No 332
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.23 Score=46.27 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHHhcCcceEEEEeccccc-chhhHHHHhhhcC-CCCCCcEEEEecCchhHHHhhCCCC
Q 043779 252 QRRLKDMLDGKRYLLVLDDVWNE-DQEKWDQLKCTLT-CGSKGSSVVVTTRLAKVASIVGTLP 312 (581)
Q Consensus 252 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~iivTtr~~~v~~~~~~~~ 312 (581)
+..+.+.+--++-+.|||...+- +.+....+...+. -...|+-+||.|..+.++..+....
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 33444444456789999998542 3333333333333 1234666777777788888876544
No 333
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.49 E-value=0.16 Score=48.11 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.|+.|.|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999863
No 334
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.52 Score=44.50 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 157 PEVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+++=|-+..++++++.+.-+-. +-..++-+..+|++|.|||-+|++...
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 3466889999999887643211 223456677999999999999999886
No 335
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.49 E-value=0.014 Score=42.58 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=34.9
Q ss_pred eeEEEEeeCCCCCc-ccccccCCCcccEeeecCCccccccCC--CCC-CcccCCccccceEeeCCCCc
Q 043779 515 TRHVTFTLSKDSFT-IPHALYRVEFSRTLLIQPTYPIILTNS--GEC-PSDISKFHRLRALEFIDPRL 578 (581)
Q Consensus 515 ~r~l~~~~~~~~~~-~~~~~~~~~~lrtl~~~~LrvL~l~~~--~~l-p~~i~~l~~LryL~l~~~~i 578 (581)
.+.+.+ .++.... .+..+..+++|++| ++++. ..+ |..+.+|.+|+||+|++|+|
T Consensus 3 L~~L~l-~~n~l~~i~~~~f~~l~~L~~L--------~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDL-SNNKLTEIPPDSFSNLPNLETL--------DLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEE-TSSTESEECTTTTTTGTTESEE--------EETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEEC-CCCCCCccCHHHHcCCCCCCEe--------EccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666 3333222 23455566666664 55543 345 56789999999999999986
No 336
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.48 E-value=0.074 Score=54.19 Aligned_cols=105 Identities=22% Similarity=0.188 Sum_probs=55.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
.++-+-|||..|.|||.|.-.+|+...++.. .++..+ . =+.++...+- .+. ........ +...+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k--~R~HFh---~-Fm~~vh~~l~-~~~---~~~~~l~~----va~~l~~ 126 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK--RRVHFH---E-FMLDVHSRLH-QLR---GQDDPLPQ----VADELAK 126 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccc--cccccc---H-HHHHHHHHHH-HHh---CCCccHHH----HHHHHHh
Confidence 5667889999999999999999986433211 111000 0 0112222222 222 11222222 2333445
Q ss_pred cceEEEEecccccchhhHHHHhhhcC-CCCCCcEEEEecC
Q 043779 262 KRYLLVLDDVWNEDQEKWDQLKCTLT-CGSKGSSVVVTTR 300 (581)
Q Consensus 262 k~~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~iivTtr 300 (581)
+..||.||.+.-.+..+--.+...|. -...|..+|.||.
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 66799999987665544333333333 1235656666665
No 337
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.038 Score=55.61 Aligned_cols=82 Identities=22% Similarity=0.210 Sum_probs=50.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-----CcCCHHHHHHHHHH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-----EAWNLDLLQRRLKD 257 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 257 (581)
-.+|.|-|.||+|||||..++..+ ....- .+.||+- ..+..++-. -.+.++.... ...+.+.+...+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsG--EES~~Qikl-RA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSG--EESLQQIKL-RADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeC--CcCHHHHHH-HHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 368899999999999999999984 33333 5556554 333333321 1234432221 23455555554444
Q ss_pred HhcCcceEEEEecccc
Q 043779 258 MLDGKRYLLVLDDVWN 273 (581)
Q Consensus 258 ~l~~k~~LlVlDdv~~ 273 (581)
.++-++|+|-+..
T Consensus 167 ---~~p~lvVIDSIQT 179 (456)
T COG1066 167 ---EKPDLVVIDSIQT 179 (456)
T ss_pred ---cCCCEEEEeccce
Confidence 6889999999854
No 338
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.2 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||++.+..-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999999874
No 339
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.45 E-value=0.065 Score=55.40 Aligned_cols=50 Identities=28% Similarity=0.269 Sum_probs=35.2
Q ss_pred CCccccchhhHHHHHHHHhc------C--cCCC-C----CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 156 QPEVYGREEDKEKIVERLVK------D--VAGS-D----DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~------~--~~~~-~----~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+..++|.++.++.+...+.. . .... + ....+.++|++|+|||++|+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 45679999988888665521 0 0000 0 124688999999999999999986
No 340
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.44 E-value=0.031 Score=52.01 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999998875
No 341
>PRK03839 putative kinase; Provisional
Probab=95.44 E-value=0.011 Score=54.22 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.|.|.|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999983
No 342
>PRK04328 hypothetical protein; Provisional
Probab=95.41 E-value=0.049 Score=52.73 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=30.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF 225 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 225 (581)
.-.++.|.|.+|+|||+|+.++... ....-..++|++....+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCCH
Confidence 4568889999999999999997763 22233457788876543
No 343
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.40 E-value=0.05 Score=58.37 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|....+.++.+.+..-.. ...-|.|.|.+|+||+.+|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~---~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR---SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 3589999999998888765432 2245669999999999999999863
No 344
>PRK04040 adenylate kinase; Provisional
Probab=95.40 E-value=0.013 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|.|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5889999999999999999987
No 345
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.37 E-value=0.077 Score=51.17 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=67.0
Q ss_pred ccccchhhHHHHHHHHhcCc--CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHH
Q 043779 158 EVYGREEDKEKIVERLVKDV--AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il 235 (581)
.++|..-..+.++..+.... .....+=+++.+|.+|+||.-+++.+.++....+--.. ....+.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~--------------~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP--------------FVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch--------------hHHHhh
Confidence 46676666666666665421 12356779999999999999999998875321111000 001111
Q ss_pred HhhCCCCCCcCCHH----HHHHHHHHHhc-CcceEEEEecccccchhhHHHHhhhcC
Q 043779 236 TSSGGNVSEAWNLD----LLQRRLKDMLD-GKRYLLVLDDVWNEDQEKWDQLKCTLT 287 (581)
Q Consensus 236 ~~l~~~~~~~~~~~----~l~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~ 287 (581)
... ..+.....+ ++...++.-++ -++-|+|||++........+.|...+.
T Consensus 149 at~--hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 149 ATL--HFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhc--cCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 111 112222222 33444444333 478999999998877777888887776
No 346
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.37 E-value=0.0087 Score=49.57 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 043779 186 YPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~ 206 (581)
|.|+|++|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 347
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.34 E-value=0.016 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+|.|+|.+|+||||||+.+...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999984
No 348
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.27 Score=47.06 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48899999999999999999764
No 349
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.33 E-value=0.025 Score=48.50 Aligned_cols=41 Identities=24% Similarity=0.209 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCc
Q 043779 164 EDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDD 207 (581)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 207 (581)
++..++-+.|..... .-.+|.+.|..|.||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l~---~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD---FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC---CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344455555543221 33589999999999999999999843
No 350
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.33 E-value=0.022 Score=54.26 Aligned_cols=85 Identities=26% Similarity=0.303 Sum_probs=49.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCC-cCceeEEEecCCCcHhHHHHHHHHhhCCC---------------CCC-
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRH-FEFRIWVFVFEDFNVRRLMTDIITSSGGN---------------VSE- 244 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~v~~~~~~~~l~~~il~~l~~~---------------~~~- 244 (581)
.-.++.|.|++|+|||+|+.++...- ... =..++|++...+. ..+...+- .++-. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~--~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG--LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh--hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 44688999999999999999877531 112 2346677765443 44444332 22210 001
Q ss_pred ----cCCHHHHHHHHHHHhcC-cceEEEEecc
Q 043779 245 ----AWNLDLLQRRLKDMLDG-KRYLLVLDDV 271 (581)
Q Consensus 245 ----~~~~~~l~~~l~~~l~~-k~~LlVlDdv 271 (581)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 24566666666665543 4468888887
No 351
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.30 E-value=0.097 Score=48.39 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=27.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCc--------CceeEEEecCCC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHF--------EFRIWVFVFEDF 225 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--------~~~~wv~v~~~~ 225 (581)
.+..|.|++|+||||++..+.........| ..++|++...+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 377899999999999999988754433222 245677765553
No 352
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.30 E-value=0.088 Score=47.27 Aligned_cols=119 Identities=18% Similarity=0.062 Sum_probs=61.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCcee--EEEecCCCcHhHHHHHHH---HhhCCCC-CCcCC-------HH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRI--WVFVFEDFNVRRLMTDII---TSSGGNV-SEAWN-------LD 249 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~--wv~v~~~~~~~~l~~~il---~~l~~~~-~~~~~-------~~ 249 (581)
...|-|++..|.||||.|..+.-.. ....+.+.+ |+.-.........+.... ...+... ....+ ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 3577888889999999998776631 222333221 333222233333433320 0001100 00011 11
Q ss_pred HHHHHHHHHhc-CcceEEEEeccccc---chhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 250 LLQRRLKDMLD-GKRYLLVLDDVWNE---DQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 250 ~l~~~l~~~l~-~k~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
......++.+. ++-=|+|||.+-.. .....+.+...+.....+.-||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22233344444 44459999998311 1233455666666666777999999965
No 353
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.88 Score=44.76 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=49.3
Q ss_pred CcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHHhh-CCCCeeeCCCCChHhHHHHHHh
Q 043779 261 GKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVASIV-GTLPVYRLSDLSEDDCWLLFKQ 330 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~ 330 (581)
+++-++|+|++........+.+...+....+++.+|++|.+. .+...+ +....+++.+ +.++..+++..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 556799999999888889999999998766667666666543 444333 3345777866 67777777754
No 354
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.012 Score=53.77 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 355
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.011 Score=51.49 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=31.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN 241 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~ 241 (581)
+|.|.|++|+||||+|+.+.++.-.. -.+.-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------------~vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------------LVSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------------eeeccHHHHHHHHHcCCC
Confidence 68899999999999999999842211 013346778887776544
No 356
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.11 Score=57.57 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++.++|+.|+||||.+..+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 469999999999999999888863
No 357
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.27 E-value=0.046 Score=55.97 Aligned_cols=83 Identities=20% Similarity=0.145 Sum_probs=48.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-----CcCCHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-----EAWNLDLLQRRLK 256 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 256 (581)
.-.++.|.|.+|+|||||+.+++... ...-..++|++.... ..++.. -+..++.... ...+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQIKL-RADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 34688999999999999999998732 222234667765433 333222 1233332211 1234444444443
Q ss_pred HHhcCcceEEEEeccc
Q 043779 257 DMLDGKRYLLVLDDVW 272 (581)
Q Consensus 257 ~~l~~k~~LlVlDdv~ 272 (581)
..+.-++|+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2466789999984
No 358
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.23 Score=47.32 Aligned_cols=23 Identities=43% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.|+.|.|||||.+.+..-
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 359
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.24 E-value=0.019 Score=55.32 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=41.7
Q ss_pred HHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHH
Q 043779 167 EKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLM 231 (581)
Q Consensus 167 ~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~ 231 (581)
.+++..+.... ++..+|+|.|.||+|||||...+.......++--.++=|.-|.+++--.++
T Consensus 38 ~~ll~~l~p~t---G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRT---GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcC---CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 45555555433 467899999999999999999988755444443344555556666544444
No 360
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.24 E-value=0.062 Score=52.35 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=29.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE 223 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 223 (581)
.-.++.|.|++|+|||++|.+++.... ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 456889999999999999999866321 2223567888764
No 361
>PRK00625 shikimate kinase; Provisional
Probab=95.22 E-value=0.014 Score=52.94 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.|.|+|++|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377999999999999999987
No 362
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.22 E-value=0.27 Score=46.35 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|..|.|||||.+.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48899999999999999999874
No 363
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.77 Score=49.66 Aligned_cols=179 Identities=16% Similarity=0.127 Sum_probs=91.9
Q ss_pred ccccchhhHHHHHHHHhcCcCC--------CCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 158 EVYGREEDKEKIVERLVKDVAG--------SDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~--------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
++=|..+.++-+.+.+..+... -....-|.++|++|.|||-||.++..... .-+++|-.+ +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----H
Confidence 4456667777777777654321 12234577999999999999999987321 124555433 2
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc-----------hhhHHHHhhhcC--CCCCCcEEE
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED-----------QEKWDQLKCTLT--CGSKGSSVV 296 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~--~~~~gs~ii 296 (581)
++...+ +. ..+.......+.-.-++++|+||.+.+.. ....+++...+. .+-.|.-|+
T Consensus 737 lL~KyI----Ga-----SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 737 LLSKYI----GA-----SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHHHh----cc-----cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEE
Confidence 222221 11 22233333333444699999999985421 122344554444 233565566
Q ss_pred EecCchhHHHh--h--CC-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchH
Q 043779 297 VTTRLAKVASI--V--GT-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLA 360 (581)
Q Consensus 297 vTtr~~~v~~~--~--~~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLa 360 (581)
-.|..++.... + |. ...+.-..-++.|-.++|....-........+ .+.++.+.+|..-|
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccc----hHHHhhhcCCCchh
Confidence 44443443222 1 11 12333444456666777765543221111212 44566666665443
No 364
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.21 E-value=0.23 Score=47.07 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999763
No 365
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.21 E-value=0.15 Score=54.39 Aligned_cols=134 Identities=17% Similarity=0.138 Sum_probs=69.6
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
..++|......++.+.+..... ....+.|.|.+|+||+++|+.+..... .....-+-+++..- ..+.+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~---~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~--~~~~~~~~l- 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR---SDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI--PKDLIESEL- 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC---cCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC--CHHHHHHHh-
Confidence 3478887777777777654322 223567999999999999999986321 11111222333222 223333222
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecCc
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTRL 301 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 301 (581)
++ ......... .............-.|+||++..........+...+..+. .+.+||+||..
T Consensus 206 -fg-~~~~~~~~~-~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 278 (463)
T TIGR01818 206 -FG-HEKGAFTGA-NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQ 278 (463)
T ss_pred -cC-CCCCCCCCc-ccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCC
Confidence 11 111000000 0000000001123458899998777777777776665332 24588888863
No 366
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.20 E-value=0.024 Score=56.43 Aligned_cols=50 Identities=32% Similarity=0.495 Sum_probs=43.0
Q ss_pred CCccccchhhHHHHHHHHhcCcCC-CCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAG-SDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...|+|.++.++++++.+...+.+ +..-+++.++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999876543 34678999999999999999999876
No 367
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.19 E-value=0.062 Score=52.08 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 043779 186 YPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~ 206 (581)
|.++|++|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999999873
No 368
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.15 E-value=0.012 Score=53.91 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 369
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.015 Score=51.48 Aligned_cols=20 Identities=40% Similarity=0.673 Sum_probs=18.4
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 043779 185 IYPIVGMGGLGKTTLAQLVF 204 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~ 204 (581)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 57899999999999999887
No 370
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.096 Score=48.48 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||++.+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 371
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.13 E-value=0.06 Score=50.52 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=48.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC-cHhHHHHHHHHhhCCC-------CCCcCCHHH-----H
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF-NVRRLMTDIITSSGGN-------VSEAWNLDL-----L 251 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~il~~l~~~-------~~~~~~~~~-----l 251 (581)
-++|.|.+|+|||+|+..+.+.. .-+..+++.+++.. .+.++..++...-... ..+...... .
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~ 92 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYT 92 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhcc
Confidence 56799999999999999998843 22334777887664 4555555554331100 011111111 1
Q ss_pred HHHHHHHh--cCcceEEEEecc
Q 043779 252 QRRLKDML--DGKRYLLVLDDV 271 (581)
Q Consensus 252 ~~~l~~~l--~~k~~LlVlDdv 271 (581)
.-.+.+++ +++.+|+++||+
T Consensus 93 a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 93 ALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHTTSEEEEEEETH
T ss_pred chhhhHHHhhcCCceeehhhhh
Confidence 11122222 589999999999
No 372
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.11 E-value=0.31 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|..|.|||||++.+...
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 373
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.2 Score=56.25 Aligned_cols=137 Identities=15% Similarity=0.240 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC--CcHhHHHHHHHHhhCC
Q 043779 163 EEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED--FNVRRLMTDIITSSGG 240 (581)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~l~~~il~~l~~ 240 (581)
...+.+|.+.+.. ..++.|+|+.|.||||-.-+++.+.-. ..... |.+.++ .....+...+.++++.
T Consensus 52 ~~~~~~i~~ai~~-------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~--I~~tQPRRlAArsvA~RvAeel~~ 120 (845)
T COG1643 52 TAVRDEILKAIEQ-------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGK--IGCTQPRRLAARSVAERVAEELGE 120 (845)
T ss_pred HHHHHHHHHHHHh-------CCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCe--EEecCchHHHHHHHHHHHHHHhCC
Confidence 4567788888753 458889999999999988887764221 11122 333333 3445677777777765
Q ss_pred CCCC-------------------cCCHHHHHHHHH-HHhcCcceEEEEecccccchhh---HHHHhhhcCCCCCCcEEEE
Q 043779 241 NVSE-------------------AWNLDLLQRRLK-DMLDGKRYLLVLDDVWNEDQEK---WDQLKCTLTCGSKGSSVVV 297 (581)
Q Consensus 241 ~~~~-------------------~~~~~~l~~~l~-~~l~~k~~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~iiv 297 (581)
...+ ..+...+.+.+. ..+-.+=-.+|+|.+++.+... ...++..+..-.+.-||||
T Consensus 121 ~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 121 KLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred CcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 4221 122334433333 2222344589999997643211 1112222223333589999
Q ss_pred ecCch---hHHHhhCC
Q 043779 298 TTRLA---KVASIVGT 310 (581)
Q Consensus 298 Ttr~~---~v~~~~~~ 310 (581)
+|=.- .++..++.
T Consensus 201 mSATld~~rfs~~f~~ 216 (845)
T COG1643 201 MSATLDAERFSAYFGN 216 (845)
T ss_pred EecccCHHHHHHHcCC
Confidence 98743 34455553
No 374
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.09 E-value=0.013 Score=54.53 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|+|.|++|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 375
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.09 E-value=0.016 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.++.|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37889999999999999998773
No 376
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.08 E-value=0.031 Score=55.53 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=50.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-----CcCCHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-----EAWNLDLLQRRLK 256 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 256 (581)
.-+++-|+|+.|+||||||..+... ....-..++|+...+.++... +..++.... .+...++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 4568999999999999999998873 333334577998877776542 233332211 2334555555556
Q ss_pred HHhcC-cceEEEEeccc
Q 043779 257 DMLDG-KRYLLVLDDVW 272 (581)
Q Consensus 257 ~~l~~-k~~LlVlDdv~ 272 (581)
.+++. ..-++|+|.|-
T Consensus 125 ~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHTTSESEEEEE-CT
T ss_pred HHhhcccccEEEEecCc
Confidence 65553 44688999983
No 377
>PRK13948 shikimate kinase; Provisional
Probab=95.08 E-value=0.2 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+.|.++|+.|+||||+++.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446788999999999999999987
No 378
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.08 E-value=0.16 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 379
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.07 E-value=0.2 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.|+.|.|||||.+.+..-
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999873
No 380
>PRK05973 replicative DNA helicase; Provisional
Probab=95.06 E-value=0.1 Score=49.71 Aligned_cols=49 Identities=10% Similarity=0.012 Sum_probs=31.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDI 234 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 234 (581)
.-.++.|.|.+|+|||+++.++..... .+=..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHH
Confidence 345788999999999999999876422 22234556655443 44444443
No 381
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.06 E-value=0.017 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 382
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.06 E-value=0.31 Score=48.62 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 383
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.05 E-value=0.021 Score=52.48 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=28.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEe
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFV 221 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 221 (581)
+++.|+|++|+|||||++.+.. .....|...++.+.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 5788999999999999999998 55566755555443
No 384
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.05 E-value=0.081 Score=56.78 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|....++++.+.+..-.. .-.-|.|.|.+|+||+++|+.+.+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~---s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR---SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 3589999999999888765432 2235669999999999999999874
No 385
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.04 E-value=0.13 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.|+.|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999864
No 386
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.02 E-value=0.29 Score=52.20 Aligned_cols=139 Identities=21% Similarity=0.309 Sum_probs=74.9
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHH-HHHHHhcCccccCCcCceeEEEecCCCcH--hHHHHHHHHhhCCCC
Q 043779 166 KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTT-LAQLVFNDDRIKRHFEFRIWVFVFEDFNV--RRLMTDIITSSGGNV 242 (581)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~l~~~il~~l~~~~ 242 (581)
.++|+..+. .-.||.|+|..|+|||| |++.+|.+ .|...--|-+.++-.+ ..+.+.+.++++...
T Consensus 361 R~~ll~~ir-------~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 361 RDQLLSVIR-------ENQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHHHh-------hCcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 345555554 23588899999999998 66666653 3332224455555443 344555666554322
Q ss_pred CC----------c----------CCHHHHHHHHHHHhcCcceEEEEecccccch--h-hHHHHhhhcCCCCCCcEEEEec
Q 043779 243 SE----------A----------WNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ--E-KWDQLKCTLTCGSKGSSVVVTT 299 (581)
Q Consensus 243 ~~----------~----------~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--~-~~~~l~~~l~~~~~gs~iivTt 299 (581)
.. . .+.--+++.|....-.|--.||+|..+.... + .+..++..+ .....-++||||
T Consensus 429 G~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKliVtS 507 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIVTS 507 (1042)
T ss_pred ccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH-HhhccceEEEee
Confidence 11 0 1122233444444345667999999975431 1 122233333 233567999998
Q ss_pred Cch---hHHHhhCCCCeeeCC
Q 043779 300 RLA---KVASIVGTLPVYRLS 317 (581)
Q Consensus 300 r~~---~v~~~~~~~~~~~l~ 317 (581)
-.. ..+..++..+.+.++
T Consensus 508 ATm~a~kf~nfFgn~p~f~Ip 528 (1042)
T KOG0924|consen 508 ATMDAQKFSNFFGNCPQFTIP 528 (1042)
T ss_pred ccccHHHHHHHhCCCceeeec
Confidence 744 455666644433333
No 387
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.02 E-value=0.028 Score=48.99 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=27.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE 223 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 223 (581)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4789999999999999999998532 34555555666554
No 388
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.01 E-value=0.016 Score=51.33 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
++.|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 367999999999999999987
No 389
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.01 E-value=0.29 Score=46.96 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-.+++|.|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 390
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.00 E-value=0.024 Score=51.06 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999874
No 391
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.00 E-value=0.017 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999987
No 392
>PHA02774 E1; Provisional
Probab=94.99 E-value=0.09 Score=55.90 Aligned_cols=37 Identities=14% Similarity=0.044 Sum_probs=27.9
Q ss_pred hHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 165 DKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-+..+..+|... +....+.|+|++|+|||.+|..+.+
T Consensus 420 fl~~lk~~l~~~----PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 420 FLTALKDFLKGI----PKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHHhcC----CcccEEEEECCCCCCHHHHHHHHHH
Confidence 345566666432 3445888999999999999999987
No 393
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.97 E-value=0.14 Score=47.94 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHHHhcCcceEEEEeccccc-chhhHH-HHhhhcCCCC-C-CcEEEEecCchhHHHh
Q 043779 255 LKDMLDGKRYLLVLDDVWNE-DQEKWD-QLKCTLTCGS-K-GSSVVVTTRLAKVASI 307 (581)
Q Consensus 255 l~~~l~~k~~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtr~~~v~~~ 307 (581)
+...+..++-++++|+.-.. +..... .+...+.... . +..||++|.+.+....
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 44555677889999998432 333334 4444443222 2 5578888887776543
No 394
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.96 E-value=0.015 Score=53.19 Aligned_cols=22 Identities=45% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 395
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.12 Score=53.54 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=44.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC-CCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE-DFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
...+++++|+.|+||||++..+............+..+.... .....+-+....+.++.......+..++...+.. +.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 346999999999999999988765211111112233333221 1122222334444444333333344444433333 33
Q ss_pred CcceEEEEeccc
Q 043779 261 GKRYLLVLDDVW 272 (581)
Q Consensus 261 ~k~~LlVlDdv~ 272 (581)
++ -++++|-..
T Consensus 269 ~~-d~VLIDTaG 279 (420)
T PRK14721 269 GK-HMVLIDTVG 279 (420)
T ss_pred CC-CEEEecCCC
Confidence 33 456667653
No 396
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.93 E-value=0.12 Score=51.86 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=54.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKR 263 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 263 (581)
..+.|+|..|+|||||++.+... ..... ..+.+.-........ .................-...+.+...++..+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~--~~~~~-~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDE--IPKDE-RIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHcc--CCccc-cEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 57889999999999999998863 22111 122221111111110 00000000000001111233445666777788
Q ss_pred eEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhH
Q 043779 264 YLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKV 304 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 304 (581)
=.+++|.+.. .+.++. ...+..+.. -++.|+...+.
T Consensus 220 d~ii~gE~r~--~e~~~~-l~a~~~g~~--~~i~T~Ha~~~ 255 (308)
T TIGR02788 220 DRIILGELRG--DEAFDF-IRAVNTGHP--GSITTLHAGSP 255 (308)
T ss_pred CeEEEeccCC--HHHHHH-HHHHhcCCC--eEEEEEeCCCH
Confidence 8899999954 344543 333333222 24666664443
No 397
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.92 E-value=0.095 Score=47.82 Aligned_cols=118 Identities=21% Similarity=0.068 Sum_probs=61.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC---CCcHhHHHHHH--HHh--hCCCC-CCcCC-------
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE---DFNVRRLMTDI--ITS--SGGNV-SEAWN------- 247 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~l~~~i--l~~--l~~~~-~~~~~------- 247 (581)
...|.|+|..|-||||.|..+.- +..++=..+..+.+-. ..+....+..+ +.. .+... ....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 35788999999999999987766 2222212222233222 22333333331 000 01100 00011
Q ss_pred HHHHHHHHHHHhc-CcceEEEEeccccc---chhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 248 LDLLQRRLKDMLD-GKRYLLVLDDVWNE---DQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 248 ~~~l~~~l~~~l~-~k~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
.....+..++.+. ++-=|+|||.+-.. .....+.+...+.....+.-||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122233344443 45569999998321 1233556666676666778999999954
No 398
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.031 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.++.|.|++|+|||||++.++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 57889999999999999999984
No 399
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.92 E-value=0.046 Score=51.84 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=58.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC---CcCCHHHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS---EAWNLDLLQRRLKDM 258 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~---~~~~~~~l~~~l~~~ 258 (581)
..+++.|+|+.|.||||+.+.+..-.- -+....+|.... ........++..++.... .......-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~---la~~g~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVL---MAQIGCFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---HHHhCCCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 446899999999999999988763200 011111222211 011112222222222111 111111112222233
Q ss_pred h--cCcceEEEEeccccc----ch--hhHHHHhhhcCCCCCCcEEEEecCchhHHHhhC
Q 043779 259 L--DGKRYLLVLDDVWNE----DQ--EKWDQLKCTLTCGSKGSSVVVTTRLAKVASIVG 309 (581)
Q Consensus 259 l--~~k~~LlVlDdv~~~----~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 309 (581)
+ ...+-|++||..... +. ..|..+ ..+.. ..|+.+|+||...++...+.
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhh
Confidence 3 356889999998321 11 122222 23322 24678999999777766544
No 400
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.91 E-value=0.026 Score=51.96 Aligned_cols=119 Identities=15% Similarity=0.088 Sum_probs=55.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC---CcCCHHHHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS---EAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~---~~~~~~~l~~~l~~~l~~ 261 (581)
++.|+|+.|.||||+.+.+.-.... .+ ...++.... . ....+..++..++.... .......-...+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l-a~--~G~~v~a~~-~-~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM-AQ--IGSFVPAES-A-ELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH-HH--hCCCeeehh-e-EecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 3679999999999999998742110 01 111121110 0 00001111111111110 011111112233444443
Q ss_pred --cceEEEEeccccc-chhhH----HHHhhhcCCCCCCcEEEEecCchhHHHhhC
Q 043779 262 --KRYLLVLDDVWNE-DQEKW----DQLKCTLTCGSKGSSVVVTTRLAKVASIVG 309 (581)
Q Consensus 262 --k~~LlVlDdv~~~-~~~~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 309 (581)
++-|+++|+.-.. +...- ..+...+.. ..++.+|++|...++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 7899999998432 11111 122222222 13678999999888776653
No 401
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=94.89 E-value=0.42 Score=44.32 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|+|+|.+|+|||||+..+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 3679999999999999999875
No 402
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.88 E-value=0.017 Score=50.71 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 403
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.87 E-value=0.11 Score=53.87 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=49.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-HhHHHHHHHHhhCCC-------CCCcCCHHH-----
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN-VRRLMTDIITSSGGN-------VSEAWNLDL----- 250 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~il~~l~~~-------~~~~~~~~~----- 250 (581)
..++|+|..|+|||||++.+.... ..+..+.+-+++... +.++...++..-... ..+......
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 468899999999999999998621 224555666666554 345555554432111 011111111
Q ss_pred HHHHHHHHh--cCcceEEEEecc
Q 043779 251 LQRRLKDML--DGKRYLLVLDDV 271 (581)
Q Consensus 251 l~~~l~~~l--~~k~~LlVlDdv 271 (581)
..-.+.+++ +++++|+++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 111233444 589999999999
No 404
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.87 E-value=0.15 Score=53.65 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=44.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc--HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN--VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
..+++++|+.|+||||++.+++........-..+..+.. +.+. ..+-+....+.++.......+..+....+. .+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~-Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT-DSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC-CccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hcc
Confidence 369999999999999999998863322221112334443 2232 223333334444333222222222322232 233
Q ss_pred CcceEEEEeccc
Q 043779 261 GKRYLLVLDDVW 272 (581)
Q Consensus 261 ~k~~LlVlDdv~ 272 (581)
++ -.+++|-..
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 43 467777764
No 405
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.87 E-value=0.021 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
++++|+|++|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999987
No 406
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.85 E-value=0.093 Score=50.80 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=52.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccc--cCCcCceeEEEecCCCc-HhHHHHHHHHhhCCC-------CCCcCCHHH---
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRI--KRHFEFRIWVFVFEDFN-VRRLMTDIITSSGGN-------VSEAWNLDL--- 250 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~wv~v~~~~~-~~~l~~~il~~l~~~-------~~~~~~~~~--- 250 (581)
.-++|.|.+|+|||+|+..+.++... +++-+.++++-+++... ..++...+...-... ..+......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 35689999999999999998875321 12245677888877654 455665555431111 011111111
Q ss_pred --HHHHHHHHhc---CcceEEEEecc
Q 043779 251 --LQRRLKDMLD---GKRYLLVLDDV 271 (581)
Q Consensus 251 --l~~~l~~~l~---~k~~LlVlDdv 271 (581)
..-.+.++++ ++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122344442 68999999999
No 407
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.84 E-value=0.03 Score=54.65 Aligned_cols=42 Identities=29% Similarity=0.183 Sum_probs=34.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED 224 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 224 (581)
+.-+++.|+|.+|+|||+++.++.. ........++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4567999999999999999999988 45555778899888655
No 408
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.82 E-value=0.02 Score=51.63 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhcCc
Q 043779 186 YPIVGMGGLGKTTLAQLVFNDD 207 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~~ 207 (581)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998743
No 409
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.81 E-value=0.67 Score=46.85 Aligned_cols=57 Identities=12% Similarity=0.003 Sum_probs=31.9
Q ss_pred CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhh
Q 043779 311 LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSL 367 (581)
Q Consensus 311 ~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~ 367 (581)
..++++++.+.+|+.++........-......-++--+++.-..+|+|--+..++..
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~ 459 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAF 459 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHh
Confidence 346888899999988776654321100000000234566777778888555555444
No 410
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.80 E-value=0.33 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48899999999999999999863
No 411
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.80 E-value=0.026 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999874
No 412
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.80 E-value=0.046 Score=48.51 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 164 EDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+++|.++|. + +++.++|.+|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~-------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK-------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT-------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc-------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45778888884 3 58889999999999999999874
No 413
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.78 E-value=0.23 Score=56.12 Aligned_cols=22 Identities=55% Similarity=0.750 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..++|+|+.|+|||||++.+..
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 414
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.36 Score=46.25 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.|+.|.|||||.+.+..-
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48899999999999999999864
No 415
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.77 E-value=0.2 Score=48.92 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=44.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC--cHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF--NVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
.++.|.|+.|+||||++..+... +.. ....+ +.+.++. ....+ .++..... ........++..++.
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~-~~~~i-itiEdp~E~~~~~~-----~q~~v~~~---~~~~~~~~l~~~lR~ 148 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNT-PEKNI-ITVEDPVEYQIPGI-----NQVQVNEK---AGLTFARGLRAILRQ 148 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCC-CCCeE-EEECCCceecCCCc-----eEEEeCCc---CCcCHHHHHHHHhcc
Confidence 57889999999999999988762 221 11111 2332221 11110 11111111 112345667777888
Q ss_pred cceEEEEecccc
Q 043779 262 KRYLLVLDDVWN 273 (581)
Q Consensus 262 k~~LlVlDdv~~ 273 (581)
.+=.|+++++.+
T Consensus 149 ~PD~i~vgEiR~ 160 (264)
T cd01129 149 DPDIIMVGEIRD 160 (264)
T ss_pred CCCEEEeccCCC
Confidence 888999999954
No 416
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.76 E-value=0.46 Score=41.57 Aligned_cols=107 Identities=17% Similarity=0.276 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHhhhhhhHHHHHH
Q 043779 2 AEAILQVVLDNLNSLIKNELGLLHGVEKEMEKLSSTLSTIQAVLEDAEEKQLK-DKALQNWLRKLKDAAYEVDDLLDEYK 80 (581)
Q Consensus 2 a~~~v~~~~~kl~s~l~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~lr~~ayd~eD~ld~~~ 80 (581)
+.|+++.+++.|...+.+...-...++.-+++|...++.|.-++++.+..... |..-+.-++++.+...+++++++.|.
T Consensus 7 ~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~s 86 (147)
T PF05659_consen 7 GGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCS 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 46777888888888888888888889999999999999999999998875321 22224558888888899999988663
Q ss_pred HHhhhhccccccccccccccCcchhhhhhHHHHHHHHHHHHHHHH
Q 043779 81 TEASRLADDNKVHAAYLTCFRPNVLFHHNIGNRIKDAREMLDGIA 125 (581)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~ 125 (581)
. ++++ ++...++.+++|+++.+.+....
T Consensus 87 k---------------~~r~--n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 87 K---------------VRRW--NLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred c---------------ccHH--HHHhhHhHHHHHHHHHHHHHHHh
Confidence 1 1111 12223456677777776665443
No 417
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.76 E-value=0.34 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||.+.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48899999999999999999874
No 418
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.76 E-value=0.18 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-..++|+|+.|.|||||++.+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999975
No 419
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.75 E-value=0.29 Score=53.98 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..++|+|..|.|||||++.+..
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 420
>PRK06217 hypothetical protein; Validated
Probab=94.75 E-value=0.021 Score=52.49 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
No 421
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.75 E-value=0.044 Score=56.15 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHhcC--------cC-CCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 157 PEVYGREEDKEKIVERLVKD--------VA-GSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~--------~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++|.++.+..+..++... .. ..-....|.++|++|+|||+||+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999998888777541 00 0012357889999999999999999873
No 422
>PRK15453 phosphoribulokinase; Provisional
Probab=94.73 E-value=0.12 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998875
No 423
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.72 E-value=0.024 Score=49.28 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 043779 186 YPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~ 205 (581)
++|+|++|+|||||++.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999999987
No 424
>PRK13947 shikimate kinase; Provisional
Probab=94.70 E-value=0.023 Score=51.52 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 425
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.13 Score=49.76 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+..++|||++|.|||-+|+.|+.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa 188 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAA 188 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHH
Confidence 567889999999999999999998
No 426
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.69 E-value=0.078 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..++|+|.+|+|||||++.+..
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~ 187 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLAR 187 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999998886
No 427
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.69 E-value=0.05 Score=59.49 Aligned_cols=74 Identities=18% Similarity=0.132 Sum_probs=52.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
++++|.++.++.|...+... +.+.++|++|+||||+|+.+.+.. ....++..+|... ...+...+++.+..
T Consensus 31 ~~vigq~~a~~~L~~~~~~~-------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~~ 101 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR-------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVPA 101 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC-------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHHH
Confidence 46889998888888777532 367799999999999999998742 2234566778665 33455666666665
Q ss_pred hhC
Q 043779 237 SSG 239 (581)
Q Consensus 237 ~l~ 239 (581)
.++
T Consensus 102 ~~G 104 (637)
T PRK13765 102 GKG 104 (637)
T ss_pred hcC
Confidence 554
No 428
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.68 E-value=0.026 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHhcCc
Q 043779 186 YPIVGMGGLGKTTLAQLVFNDD 207 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~~ 207 (581)
|.|+|.+|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999999754
No 429
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.68 E-value=0.038 Score=56.53 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHHhcCc---------CCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 157 PEVYGREEDKEKIVERLVKDV---------AGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++|.++.+..+.-.+.... ......+-|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 457888888888866665320 01112467889999999999999999873
No 430
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.67 E-value=0.27 Score=54.60 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..|+|+|.+|+|||||++.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999865
No 431
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.66 E-value=0.089 Score=52.91 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 043779 186 YPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~ 206 (581)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999864
No 432
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.52 Score=42.50 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=30.0
Q ss_pred HHHHHhcCcceEEEEeccccc-chhhHHHHhhhcC-CCCCCcEEEEecCch
Q 043779 254 RLKDMLDGKRYLLVLDDVWNE-DQEKWDQLKCTLT-CGSKGSSVVVTTRLA 302 (581)
Q Consensus 254 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~iivTtr~~ 302 (581)
.+.+..-.++-|.+||..... |...-..+...+. ....|..||.||..+
T Consensus 140 AlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 140 ALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 445555677889999998543 2222233333333 455788999999844
No 433
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.64 E-value=0.15 Score=53.27 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=51.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-HhHHHHHHHHhhCCC-------CCCcCCHHH-----
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN-VRRLMTDIITSSGGN-------VSEAWNLDL----- 250 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~il~~l~~~-------~~~~~~~~~----- 250 (581)
.-++|.|.+|+|||||+.++........ =..++++-+++... +.+++..+...-... ..+......
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 3678999999999999998866322111 13466777766543 456666665432111 011111111
Q ss_pred HHHHHHHHh---cCcceEEEEecc
Q 043779 251 LQRRLKDML---DGKRYLLVLDDV 271 (581)
Q Consensus 251 l~~~l~~~l---~~k~~LlVlDdv 271 (581)
..-.+.+++ +++++||++|++
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 122344554 679999999999
No 434
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.63 E-value=0.073 Score=58.33 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=45.9
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC-CcCceeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR-HFEFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~l~~~il 235 (581)
++++|.++.++.+...+... ..+.++|++|+||||+|+.+.+ .... .|...+++... ..+...++..+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~-------~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~v~ 87 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK-------RNVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVEVP 87 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC-------CCEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHHHH
Confidence 46789988888777777532 2455999999999999999997 3333 33333333322 223334455555
Q ss_pred HhhC
Q 043779 236 TSSG 239 (581)
Q Consensus 236 ~~l~ 239 (581)
..++
T Consensus 88 ~~~g 91 (608)
T TIGR00764 88 AGEG 91 (608)
T ss_pred Hhhc
Confidence 4443
No 435
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.63 E-value=0.035 Score=63.40 Aligned_cols=183 Identities=14% Similarity=0.098 Sum_probs=90.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCcccc--CCcCceeEEEecCCC----cHh--HHHHHHHHhhCCCCCCcCCHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIK--RHFEFRIWVFVFEDF----NVR--RLMTDIITSSGGNVSEAWNLDLLQR 253 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~v~~~~----~~~--~l~~~il~~l~~~~~~~~~~~~l~~ 253 (581)
...-+.|+|.+|+||||+.+.+.-....+ ..=+..+++.+.... ... .+..-+...+..... ..+...
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~ 296 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIE 296 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhH
Confidence 34467899999999999998876532111 112233344432111 111 122222222222111 112222
Q ss_pred HHHHHhcCcceEEEEecccccchhhH----HHHhhhcCCCCCCcEEEEecCchhHHHhhCCCCeeeCCCCChHhHHHHHH
Q 043779 254 RLKDMLDGKRYLLVLDDVWNEDQEKW----DQLKCTLTCGSKGSSVVVTTRLAKVASIVGTLPVYRLSDLSEDDCWLLFK 329 (581)
Q Consensus 254 ~l~~~l~~k~~LlVlDdv~~~~~~~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~e~~~lf~ 329 (581)
...++++..++++.+|.+.......- ..+...+ ..-+.+.+|+|+|....-........+++..+.++.......
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~-~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFL-QEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHh-hhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 22567788999999999854322211 1122222 333578999999966555444334455666666555443332
Q ss_pred hh--------hcCCCCCCC-chHHHH---HHHHHHHcCCCchHHHHhhhhhc
Q 043779 330 QR--------AFGNDTEPP-MNILAI---AKEIVKKCKGVPLAAKTLGSLMH 369 (581)
Q Consensus 330 ~~--------a~~~~~~~~-~~l~~~---~~~I~~~~~G~PLai~~~~~~L~ 369 (581)
.. .++...... .....+ ...-++.....|+.+.+.+..-.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 11 111111000 011111 12233444888999988886554
No 436
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.62 E-value=0.37 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.|+.|.|||||.+.++..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999864
No 437
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.62 E-value=0.37 Score=57.95 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.++-|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3556779999999999999999985
No 438
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.61 E-value=0.086 Score=53.07 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCcceEEEEeccccc-chhhHHHHhhhcCCC--CCCcEEEEecCchhHHHhhCCCC
Q 043779 251 LQRRLKDMLDGKRYLLVLDDVWNE-DQEKWDQLKCTLTCG--SKGSSVVVTTRLAKVASIVGTLP 312 (581)
Q Consensus 251 l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~~~~ 312 (581)
-..+|...+..++-+++.|.+... |...--.+...+... ..|+.+++.|+.+++.+.+....
T Consensus 514 eR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 514 ERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred HHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 344667777888889999987321 212212222233322 25666777777788877765443
No 439
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.60 E-value=0.069 Score=55.86 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=52.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-HhHHHHHHHHhhCCC-------CCCcCCHH-----H
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN-VRRLMTDIITSSGGN-------VSEAWNLD-----L 250 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~il~~l~~~-------~~~~~~~~-----~ 250 (581)
.-++|.|.+|+|||||+.++...... .+-+.++++-+++... +.++...+...-... ..+..... .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 36789999999999999988874332 2445666777765543 455555555432111 11111111 1
Q ss_pred HHHHHHHHh---cCcceEEEEecc
Q 043779 251 LQRRLKDML---DGKRYLLVLDDV 271 (581)
Q Consensus 251 l~~~l~~~l---~~k~~LlVlDdv 271 (581)
..-.+.+++ .++++|+++||+
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 222334454 378999999999
No 440
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.58 E-value=0.053 Score=45.62 Aligned_cols=49 Identities=16% Similarity=0.341 Sum_probs=33.8
Q ss_pred ccccchhhHHHHHHHHhcCc--CCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 158 EVYGREEDKEKIVERLVKDV--AGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.++|-.-..+.+.+.+.... .....+-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45666655555555544321 12356789999999999999988888764
No 441
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.58 E-value=0.34 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-..++|+|+.|.|||||++.+...
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358899999999999999999763
No 442
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.57 E-value=0.067 Score=56.62 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=24.8
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+++++|..... + .-..|+|++|+|||||++.+.+
T Consensus 405 RvIDll~PIGk---G-QR~LIvgpp~aGKTtLL~~IAn 438 (672)
T PRK12678 405 RVIDLIMPIGK---G-QRGLIVSPPKAGKTTILQNIAN 438 (672)
T ss_pred eeeeeeccccc---C-CEeEEeCCCCCCHHHHHHHHHH
Confidence 45555554322 2 3456999999999999999998
No 443
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.57 E-value=0.093 Score=50.47 Aligned_cols=77 Identities=17% Similarity=0.057 Sum_probs=41.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC--cHhHHHHHHHHh----hCCCC--CCcCCHHHHHHHHH
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF--NVRRLMTDIITS----SGGNV--SEAWNLDLLQRRLK 256 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~l~~~il~~----l~~~~--~~~~~~~~l~~~l~ 256 (581)
+|+|.|.+|+||||+++.+.......+ .....++...-+ +-...-..+... ..-.. +++.+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998886321111 112233221111 111211111111 11122 45667888888888
Q ss_pred HHhcCcc
Q 043779 257 DMLDGKR 263 (581)
Q Consensus 257 ~~l~~k~ 263 (581)
.+..++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 8776543
No 444
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.56 E-value=0.44 Score=45.27 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||++.++.-
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999999864
No 445
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.56 E-value=0.12 Score=56.42 Aligned_cols=117 Identities=20% Similarity=0.112 Sum_probs=58.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccc-cCCcCceeEEEecCCCcHhHHHHHHHHhhCCC-CCC------cCCHHHHHHHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRI-KRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN-VSE------AWNLDLLQRRL 255 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~-~~~------~~~~~~l~~~l 255 (581)
++..|.|.+|.||||++..+...... ...-...+.+.....--...+...+-..+..- ..+ ......+.+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 57889999999999999888763211 11111234433333223334444333222110 000 00111121111
Q ss_pred HHHh--------cCcc---eEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh
Q 043779 256 KDML--------DGKR---YLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK 303 (581)
Q Consensus 256 ~~~l--------~~k~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 303 (581)
.... .+.+ -++|+|.+.-.+......+...++ +++++|+---..+
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 1100 1111 389999986666666666666665 5678887665443
No 446
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.55 E-value=0.23 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+.+|.++|++|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 447
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.54 E-value=0.22 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++|+|..|.|||||++.+..-
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999763
No 448
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.69 Score=44.50 Aligned_cols=55 Identities=27% Similarity=0.309 Sum_probs=39.4
Q ss_pred CccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc
Q 043779 157 PEVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF 213 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F 213 (581)
.++=|-+..+++|.+...-+.. +-..++-|.++|.+|.|||-||++|+| .....|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN--qTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN--QTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc--ccchhh
Confidence 3456788888888887643221 223455666999999999999999999 455444
No 449
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.53 E-value=0.12 Score=54.04 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=50.8
Q ss_pred EEEEEecCCCcHHHHH-HHHhcCcccc-----CCcCceeEEEecCCCcHhHHHHHHHHhhCC-CC-------CCcCCHHH
Q 043779 185 IYPIVGMGGLGKTTLA-QLVFNDDRIK-----RHFEFRIWVFVFEDFNVRRLMTDIITSSGG-NV-------SEAWNLDL 250 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~v~~~~~~~~l~~~il~~l~~-~~-------~~~~~~~~ 250 (581)
-++|.|..|+|||+|| ..+.+...+. ++-..++++.+++......-+...+.+-+. .. .+.....+
T Consensus 191 R~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r 270 (574)
T PTZ00185 191 RELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQ 270 (574)
T ss_pred EEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHH
Confidence 5679999999999997 6666643221 233567788888876544334444444331 10 11111111
Q ss_pred -----HHHHHHHHh--cCcceEEEEeccc
Q 043779 251 -----LQRRLKDML--DGKRYLLVLDDVW 272 (581)
Q Consensus 251 -----l~~~l~~~l--~~k~~LlVlDdv~ 272 (581)
..-.+.+++ +++.+|+|+||+-
T Consensus 271 ~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 271 YLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111223333 4789999999993
No 450
>PRK15115 response regulator GlrR; Provisional
Probab=94.52 E-value=0.21 Score=52.90 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=67.2
Q ss_pred ccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHH-HHH
Q 043779 158 EVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTD-IIT 236 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~-il~ 236 (581)
.++|....+.++.+....... .-..+.|.|.+|+|||++|+.+.+.... ....|+.+.-..-....+.. +..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~---~~~~vli~Ge~GtGk~~lA~~ih~~s~r----~~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ---SDVSVLINGQSGTGKEILAQAIHNASPR----ASKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc---CCCeEEEEcCCcchHHHHHHHHHHhcCC----CCCCeEEEeCCCCCHHHHHHHhcC
Confidence 467877777777665544322 2234669999999999999998873211 11123333211111222222 111
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecCc
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTRL 301 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 301 (581)
...+........ ..-+ ......-.|+||++..........+...+..+. ...+||.||..
T Consensus 208 ~~~~~~~~~~~~---~~g~--~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~ 278 (444)
T PRK15115 208 HARGAFTGAVSN---REGL--FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR 278 (444)
T ss_pred CCcCCCCCCccC---CCCc--EEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC
Confidence 111110000000 0000 001123479999998777776677776665322 14588888874
No 451
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.50 E-value=0.23 Score=54.58 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++|+|..|.|||||++.+...
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47889999999999999998653
No 452
>PRK13949 shikimate kinase; Provisional
Probab=94.49 E-value=0.027 Score=50.97 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 453
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.48 E-value=0.03 Score=51.57 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
++.|+|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7889999999999999999763
No 454
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.032 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57899999999999999988876
No 455
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.47 E-value=0.06 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6889999999999999999984
No 456
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.47 E-value=0.03 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+|+|+|++|+|||||++.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 457
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.45 E-value=0.034 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999987
No 458
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.44 E-value=0.034 Score=51.57 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 459
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.43 E-value=0.19 Score=47.75 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=29.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED 224 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 224 (581)
.-.++.|.|.+|+|||++|.+++... ...=..++|++...+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~--~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQG--LKNGEKAMYISLEER 55 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCC
Confidence 45688899999999999999887631 122234667776553
No 460
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.43 E-value=0.12 Score=47.79 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 461
>PRK14530 adenylate kinase; Provisional
Probab=94.42 E-value=0.028 Score=53.10 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 462
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.41 E-value=0.035 Score=52.03 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+.+.|+|++|+|||||++.+..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 567888999999999999999975
No 463
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.41 E-value=0.41 Score=53.93 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..++|+|..|.|||||++.+..
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 464
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.39 E-value=0.038 Score=45.30 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEEEecCCCcHHHHHHHHh
Q 043779 184 SIYPIVGMGGLGKTTLAQLVF 204 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~ 204 (581)
..++|.|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 578999999999999999976
No 465
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.38 E-value=0.038 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|.|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 466
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.49 Score=45.21 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999999875
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.36 E-value=0.099 Score=55.90 Aligned_cols=60 Identities=22% Similarity=0.110 Sum_probs=37.3
Q ss_pred HHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHH
Q 043779 167 EKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 167 ~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 233 (581)
..+-++|... -..-.++.|.|++|+|||||+.++.... ..+-..+++++..+ +..++...
T Consensus 250 ~~lD~~lgGG---~~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~ 309 (484)
T TIGR02655 250 VRLDEMCGGG---FFKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRN 309 (484)
T ss_pred HhHHHHhcCC---ccCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHH
Confidence 3444445332 2345788899999999999999998742 22334466666543 34444444
No 468
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.36 E-value=0.13 Score=55.89 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=25.2
Q ss_pred EEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 265 LLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 265 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
+||+|.+.-.+...+..+...++ +++++|+.--..
T Consensus 262 vlIiDEaSMvd~~l~~~ll~al~---~~~rlIlvGD~~ 296 (586)
T TIGR01447 262 VLVVDEASMVDLPLMAKLLKALP---PNTKLILLGDKN 296 (586)
T ss_pred EEEEcccccCCHHHHHHHHHhcC---CCCEEEEECChh
Confidence 89999997666666677766665 567888776533
No 469
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.33 E-value=0.051 Score=50.92 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|.+|+|||||++.+..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 470
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.33 E-value=0.068 Score=50.48 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEEEecCCCcHHHHHHHHh
Q 043779 184 SIYPIVGMGGLGKTTLAQLVF 204 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~ 204 (581)
.++.|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 688999999999999999985
No 471
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.33 E-value=0.27 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHh
Q 043779 184 SIYPIVGMGGLGKTTLAQLVF 204 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~ 204 (581)
+++.|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 472
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.30 E-value=0.23 Score=47.82 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=34.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHh
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITS 237 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~ 237 (581)
.-.++.|.|.+|+|||+++.+++.+...... ..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHHHH
Confidence 3358889999999999999998764322212 2455665543 455666666543
No 473
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.29 E-value=0.2 Score=48.56 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=46.3
Q ss_pred EEEEEEecCCCcHHHHH-HHHhcCccccCCcCce-eEEEecCCCc-HhHHHHHHHHhhCCC-------CCCcCCHHH---
Q 043779 184 SIYPIVGMGGLGKTTLA-QLVFNDDRIKRHFEFR-IWVFVFEDFN-VRRLMTDIITSSGGN-------VSEAWNLDL--- 250 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~-~wv~v~~~~~-~~~l~~~il~~l~~~-------~~~~~~~~~--- 250 (581)
.-++|.|.+|+|||+|| ..+.+. ..-+.. +++-+++... +.++...+...-... ..+......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 35779999999999996 556552 123344 5666666643 455555555321111 011111111
Q ss_pred --HHHHHHHHh--cCcceEEEEecc
Q 043779 251 --LQRRLKDML--DGKRYLLVLDDV 271 (581)
Q Consensus 251 --l~~~l~~~l--~~k~~LlVlDdv 271 (581)
..-.+.+++ +++.+|+++||+
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 111222333 478999999999
No 474
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.28 E-value=0.074 Score=50.62 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=26.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCcc-----ccCCcCceeEEEecCCCcHhHHHHHHH
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDR-----IKRHFEFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~-----~~~~F~~~~wv~v~~~~~~~~l~~~il 235 (581)
+..|+|+||.||||++..+..... ....-...+-++...+..+..++..+.
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~ 74 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLK 74 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHH
Confidence 688999999999987766665320 112333344444444444444444443
No 475
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.27 E-value=0.14 Score=56.82 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=55.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-----CcCCHHHHHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-----EAWNLDLLQRRL 255 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l 255 (581)
+.-+++-|.|++|+|||||+.+++... ...=..++|+.....++.. .++.++.... ...+.++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 356788899999999999998876532 2222456888887777743 4555554321 233445555556
Q ss_pred HHHhc-CcceEEEEeccc
Q 043779 256 KDMLD-GKRYLLVLDDVW 272 (581)
Q Consensus 256 ~~~l~-~k~~LlVlDdv~ 272 (581)
...++ ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 66554 456799999984
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.27 E-value=0.31 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...++.++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999998874
No 477
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.26 E-value=0.33 Score=45.88 Aligned_cols=118 Identities=16% Similarity=0.028 Sum_probs=57.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCC---cC----CHHHHHHHH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSE---AW----NLDLLQRRL 255 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~---~~----~~~~l~~~l 255 (581)
..++.|.|+.|.||||+.+.+....- ..+-...+|-.- . ....+.+|+..++..... .. +..++...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~-la~~G~~v~a~~---~-~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITI-MAQIGSFVPASS---A-TLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HHhCCCEEEcCc---e-EEeccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 35788999999999999998875210 001011111110 0 001111122222211111 11 122222223
Q ss_pred HHHhcCcceEEEEecccccc----hhh-HHHHhhhcCCCCCCcEEEEecCchhHHHhh
Q 043779 256 KDMLDGKRYLLVLDDVWNED----QEK-WDQLKCTLTCGSKGSSVVVTTRLAKVASIV 308 (581)
Q Consensus 256 ~~~l~~k~~LlVlDdv~~~~----~~~-~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 308 (581)
.. ..++-|++||++.... ... ...+...+... .++.+|++|...+++...
T Consensus 106 ~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred Hh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 22 2468999999973221 111 11233333332 578999999998887654
No 478
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.26 E-value=0.21 Score=51.85 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=48.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC-cHhHHHHHHHHhhCCC-------CCCcCCHHHH----
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF-NVRRLMTDIITSSGGN-------VSEAWNLDLL---- 251 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~il~~l~~~-------~~~~~~~~~l---- 251 (581)
..++|.|.+|+|||||.+.+.+.. +.+..+++.++... .+.+.+.+....-... ..+.......
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 478899999999999999998732 23445566665543 3445555443211000 0111111111
Q ss_pred -HHHHHHHh--cCcceEEEEecc
Q 043779 252 -QRRLKDML--DGKRYLLVLDDV 271 (581)
Q Consensus 252 -~~~l~~~l--~~k~~LlVlDdv 271 (581)
.-.+.+++ +++++||++||+
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCH
Confidence 11233444 478999999999
No 479
>PF13479 AAA_24: AAA domain
Probab=94.26 E-value=0.16 Score=47.85 Aligned_cols=19 Identities=47% Similarity=0.450 Sum_probs=16.9
Q ss_pred EEEEEecCCCcHHHHHHHH
Q 043779 185 IYPIVGMGGLGKTTLAQLV 203 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v 203 (581)
.+.|+|.+|+||||+|..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 4669999999999999876
No 480
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.032 Score=47.88 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=38.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
+-|.|.|.||+|||||+..+... . . .-|+++|+-..-.++....=+.. .....+.+.+...|.-.+.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~--~--~---~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK--T--G---LEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH--h--C---CceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhc
Confidence 34679999999999999999862 1 1 23666665433333332221111 11233455555555555544
No 481
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.25 E-value=0.027 Score=50.56 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=18.2
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 043779 186 YPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~ 205 (581)
|.|+|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987
No 482
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.24 E-value=0.077 Score=52.35 Aligned_cols=50 Identities=30% Similarity=0.273 Sum_probs=37.6
Q ss_pred cCCccccchhhHH---HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCc
Q 043779 155 AQPEVYGREEDKE---KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDD 207 (581)
Q Consensus 155 ~~~~~vGR~~~~~---~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 207 (581)
..+.+||..+..+ -+++++.+... .-+.|.|+|++|.|||+||-.+.+..
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~---aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKM---AGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcc---cccEEEEECCCCCcHHHHHHHHHHHh
Confidence 3467899876555 36777766433 34678899999999999999999843
No 483
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.22 E-value=0.033 Score=49.34 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 043779 186 YPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~ 205 (581)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999986
No 484
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.22 E-value=0.64 Score=49.51 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||++.+..-
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48899999999999999999874
No 485
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.22 E-value=0.57 Score=52.91 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-..++|+|+.|.|||||++.+..-
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358899999999999999998763
No 486
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.19 E-value=0.56 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-..++|+|+.|.|||||++.+..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999876
No 487
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.18 E-value=0.1 Score=55.02 Aligned_cols=83 Identities=22% Similarity=0.154 Sum_probs=49.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-----CcCCHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-----EAWNLDLLQRRLK 256 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 256 (581)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... +..++.... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 446889999999999999999987432 22234567765443 3333222 333432111 1234455544443
Q ss_pred HHhcCcceEEEEeccc
Q 043779 257 DMLDGKRYLLVLDDVW 272 (581)
Q Consensus 257 ~~l~~k~~LlVlDdv~ 272 (581)
+ .+.-++|+|.+.
T Consensus 154 ~---~~~~lVVIDSIq 166 (446)
T PRK11823 154 E---EKPDLVVIDSIQ 166 (446)
T ss_pred h---hCCCEEEEechh
Confidence 2 356689999984
No 488
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.17 E-value=0.35 Score=51.83 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEEecCCCcHHHHHHHH-------hcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCC-----------------
Q 043779 186 YPIVGMGGLGKTTLAQLV-------FNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN----------------- 241 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v-------~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~----------------- 241 (581)
|+|+|+.|+|||||.+.+ .-.......-....+-.-........-..+.+......
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Q ss_pred ------CCCcCCHHHHHHHHHHHhcCcceEEEEeccccc-chhhHHHHhhhcCCCCCCcEEEEecCchhHHHhhCCCCee
Q 043779 242 ------VSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE-DQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASIVGTLPVY 314 (581)
Q Consensus 242 ------~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~ 314 (581)
...-+..+...-.+...+-.++-+||||.--+. |.+..+.|..++...... ||+.|.++.....+. ..++
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt--vl~VSHDr~Fl~~va-~~i~ 507 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT--VLLVSHDRYFLDRVA-TRIW 507 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCe--EEEEeCCHHHHHhhc-ceEE
Q ss_pred eCCC
Q 043779 315 RLSD 318 (581)
Q Consensus 315 ~l~~ 318 (581)
.+.+
T Consensus 508 ~~~~ 511 (530)
T COG0488 508 LVED 511 (530)
T ss_pred EEcC
No 489
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.15 E-value=0.49 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..++|+|+.|+|||||++.+..
T Consensus 506 e~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 490
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.14 E-value=0.078 Score=48.95 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=29.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|-+..+..+.-.... ..-+.++|++|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG-------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG-------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC-------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC-------CCCeEEECCCCCCHHHHHHHHHH
Confidence 3577877777666655442 23577999999999999999865
No 491
>PRK13409 putative ATPase RIL; Provisional
Probab=94.10 E-value=0.47 Score=52.02 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|+|||||++.++..
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 492
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.09 E-value=0.068 Score=53.27 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=33.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 233 (581)
.+++.+.|.|||||||+|.+..-. .......+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhcc
Confidence 478999999999999999886542 2222244666666666665555443
No 493
>PLN02200 adenylate kinase family protein
Probab=94.09 E-value=0.042 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999886
No 494
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.08 E-value=0.089 Score=54.59 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=49.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-HhHHHHHHHHhhCCC-------CCCcCCHH-----
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN-VRRLMTDIITSSGGN-------VSEAWNLD----- 249 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~il~~l~~~-------~~~~~~~~----- 249 (581)
-..++|+|..|+|||||++.+++... .+..+++-+++... +.++....+..-+.. ..+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35778999999999999999987322 23445566665544 334444444332111 01111111
Q ss_pred HHHHHHHHHh--cCcceEEEEecc
Q 043779 250 LLQRRLKDML--DGKRYLLVLDDV 271 (581)
Q Consensus 250 ~l~~~l~~~l--~~k~~LlVlDdv 271 (581)
...-.+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1112233444 489999999999
No 495
>PRK14527 adenylate kinase; Provisional
Probab=94.06 E-value=0.041 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|.|+|++|+||||+|+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 496
>PF13245 AAA_19: Part of AAA domain
Probab=94.06 E-value=0.047 Score=41.89 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=16.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+++.|.|++|.|||+++.....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999955544433
No 497
>PRK13975 thymidylate kinase; Provisional
Probab=94.05 E-value=0.041 Score=51.07 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+|.|.|+.|+||||+++.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999983
No 498
>COG4240 Predicted kinase [General function prediction only]
Probab=94.03 E-value=0.26 Score=45.56 Aligned_cols=83 Identities=17% Similarity=0.068 Sum_probs=50.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhC-----CCCCCcCCHHHHHHHH
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSG-----GNVSEAWNLDLLQRRL 255 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~-----~~~~~~~~~~~l~~~l 255 (581)
+.+-+++|.|+-|+||||++..+++....++- ..+...++.+-+-...-...+.++.. ...+...+..-+.+.|
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 35789999999999999999999986444432 34444444333222222333334432 1234556677777777
Q ss_pred HHHhcCcce
Q 043779 256 KDMLDGKRY 264 (581)
Q Consensus 256 ~~~l~~k~~ 264 (581)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 777776643
No 499
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.01 E-value=0.25 Score=51.23 Aligned_cols=84 Identities=24% Similarity=0.334 Sum_probs=46.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC-CcHhHHHHHHHHhhCCC-------CCCcCCHHH-----
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED-FNVRRLMTDIITSSGGN-------VSEAWNLDL----- 250 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~il~~l~~~-------~~~~~~~~~----- 250 (581)
..++|.|.+|+|||||++.+..... . +..+.+.+... -.+.++....+..-+.. ..+......
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 4788999999999999998887321 1 22333333332 33444555444332111 011111111
Q ss_pred HHHHHHHHh--cCcceEEEEecc
Q 043779 251 LQRRLKDML--DGKRYLLVLDDV 271 (581)
Q Consensus 251 l~~~l~~~l--~~k~~LlVlDdv 271 (581)
..-.+.+++ +++.+||++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112234444 478999999999
No 500
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.98 E-value=0.047 Score=51.24 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.++++|+++|..|+|||||..++.+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999873
Done!