Query 043779
Match_columns 581
No_of_seqs 375 out of 3113
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.7E-51 2.6E-55 439.4 24.1 319 157-500 128-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.6E-40 5.4E-45 363.7 21.6 285 158-491 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-39 4.7E-44 386.6 28.1 313 153-498 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.2E-36 7.7E-41 330.9 26.1 307 155-496 122-450 (591)
5 2qen_A Walker-type ATPase; unk 99.8 5.3E-17 1.8E-21 165.0 26.1 291 155-492 10-349 (350)
6 3qfl_A MLA10; coiled-coil, (CC 99.7 7.4E-19 2.5E-23 146.3 4.7 82 4-85 1-84 (115)
7 2fna_A Conserved hypothetical 99.7 2.4E-16 8.1E-21 160.6 22.5 287 155-491 11-356 (357)
8 1w5s_A Origin recognition comp 99.7 1E-16 3.5E-21 166.9 19.4 301 156-471 21-373 (412)
9 1fnn_A CDC6P, cell division co 99.6 2.9E-13 1E-17 139.5 26.3 296 156-471 16-353 (389)
10 2v1u_A Cell division control p 99.6 1.7E-13 5.8E-18 141.1 23.4 296 156-470 18-352 (387)
11 2qby_B CDC6 homolog 3, cell di 99.6 2.7E-13 9.4E-18 139.5 24.8 295 156-471 19-341 (384)
12 2qby_A CDC6 homolog 1, cell di 99.5 1.2E-12 4.2E-17 134.5 21.6 294 156-470 19-349 (386)
13 1njg_A DNA polymerase III subu 99.5 3.3E-12 1.1E-16 122.2 19.6 197 157-367 23-230 (250)
14 2chg_A Replication factor C sm 99.4 2E-11 7E-16 114.9 17.1 177 157-364 17-203 (226)
15 1sxj_B Activator 1 37 kDa subu 99.2 1.2E-10 4E-15 116.6 14.9 181 157-367 21-212 (323)
16 1hqc_A RUVB; extended AAA-ATPa 99.2 5E-11 1.7E-15 119.5 11.9 182 157-368 12-214 (324)
17 1iqp_A RFCS; clamp loader, ext 99.0 1.5E-09 5E-14 108.7 13.3 183 157-366 25-213 (327)
18 1jr3_A DNA polymerase III subu 99.0 7.9E-09 2.7E-13 105.5 17.2 195 157-365 16-221 (373)
19 2chq_A Replication factor C sm 98.9 1.3E-08 4.3E-13 101.5 15.1 181 157-364 17-203 (319)
20 3te6_A Regulatory protein SIR3 98.9 1.2E-08 4.2E-13 100.3 13.1 173 157-333 20-212 (318)
21 3pfi_A Holliday junction ATP-d 98.8 8.1E-08 2.8E-12 96.6 17.2 178 157-365 29-227 (338)
22 3bos_A Putative DNA replicatio 98.7 1.6E-08 5.5E-13 96.2 8.2 174 157-365 28-217 (242)
23 1sxj_D Activator 1 41 kDa subu 98.7 6.1E-08 2.1E-12 98.0 12.8 193 157-363 37-233 (353)
24 1jbk_A CLPB protein; beta barr 98.7 3.6E-08 1.2E-12 90.0 8.8 152 157-328 22-194 (195)
25 3uk6_A RUVB-like 2; hexameric 98.7 4.2E-07 1.4E-11 92.5 17.0 196 157-364 44-302 (368)
26 1sxj_E Activator 1 40 kDa subu 98.6 1.5E-07 5.3E-12 95.2 11.7 196 157-366 14-238 (354)
27 2z4s_A Chromosomal replication 98.6 1.3E-07 4.3E-12 98.4 11.2 161 183-363 130-304 (440)
28 3pvs_A Replication-associated 98.6 7E-07 2.4E-11 92.7 15.6 176 157-363 26-213 (447)
29 3h4m_A Proteasome-activating n 98.6 1.1E-06 3.7E-11 86.0 15.6 184 156-363 16-229 (285)
30 1a5t_A Delta prime, HOLB; zinc 98.6 2.6E-06 9E-11 85.2 18.6 184 163-365 8-205 (334)
31 1sxj_A Activator 1 95 kDa subu 98.5 5.4E-07 1.8E-11 95.9 13.1 197 157-366 39-254 (516)
32 3syl_A Protein CBBX; photosynt 98.5 1.2E-06 4.2E-11 86.6 14.8 160 158-333 32-218 (309)
33 3u61_B DNA polymerase accessor 98.5 6.9E-07 2.3E-11 89.2 11.7 171 157-363 26-214 (324)
34 1sxj_C Activator 1 40 kDa subu 98.4 2E-06 6.9E-11 86.4 14.3 177 157-362 25-209 (340)
35 2qz4_A Paraplegin; AAA+, SPG7, 98.4 4.9E-06 1.7E-10 80.0 16.0 186 157-364 6-221 (262)
36 1d2n_A N-ethylmaleimide-sensit 98.4 7.8E-06 2.7E-10 79.2 16.9 172 157-357 33-229 (272)
37 1l8q_A Chromosomal replication 98.4 3.5E-06 1.2E-10 84.0 14.8 170 166-361 23-204 (324)
38 3eie_A Vacuolar protein sortin 98.4 9.8E-06 3.4E-10 80.6 17.5 184 157-365 18-228 (322)
39 2qp9_X Vacuolar protein sortin 98.4 9E-06 3.1E-10 82.0 16.9 184 157-365 51-261 (355)
40 1xwi_A SKD1 protein; VPS4B, AA 98.3 3.8E-05 1.3E-09 76.2 20.8 186 157-366 12-224 (322)
41 1in4_A RUVB, holliday junction 98.3 4.4E-05 1.5E-09 76.2 20.7 177 157-364 25-222 (334)
42 3n70_A Transport activator; si 98.3 9.7E-07 3.3E-11 76.8 7.4 114 158-301 2-115 (145)
43 3d8b_A Fidgetin-like protein 1 98.3 9.2E-06 3.1E-10 82.0 15.5 186 157-366 84-296 (357)
44 2p65_A Hypothetical protein PF 98.3 1E-06 3.5E-11 79.8 7.1 45 157-206 22-66 (187)
45 3b9p_A CG5977-PA, isoform A; A 98.2 3.6E-05 1.2E-09 75.5 17.4 183 157-365 21-233 (297)
46 2gno_A DNA polymerase III, gam 98.2 1.4E-05 4.8E-10 78.5 13.0 149 161-332 1-152 (305)
47 2zan_A Vacuolar protein sortin 98.2 6.5E-05 2.2E-09 78.1 18.5 187 157-365 134-345 (444)
48 3ec2_A DNA replication protein 98.2 3.7E-06 1.3E-10 76.0 7.8 120 162-300 19-141 (180)
49 3vfd_A Spastin; ATPase, microt 98.2 5.2E-05 1.8E-09 77.5 17.2 186 157-365 115-326 (389)
50 3cf0_A Transitional endoplasmi 98.1 3.3E-05 1.1E-09 76.0 14.7 180 157-360 15-223 (301)
51 2c9o_A RUVB-like 1; hexameric 98.1 2.2E-05 7.6E-10 82.0 14.1 99 264-365 297-410 (456)
52 3pxg_A Negative regulator of g 98.1 3.6E-05 1.2E-09 80.6 15.2 148 157-333 180-339 (468)
53 4fcw_A Chaperone protein CLPB; 98.1 2.4E-05 8.3E-10 77.2 12.9 137 158-301 18-169 (311)
54 3co5_A Putative two-component 98.1 4.2E-06 1.4E-10 72.5 5.7 110 157-300 4-114 (143)
55 3hu3_A Transitional endoplasmi 98.0 3E-05 1E-09 81.3 13.1 184 157-364 204-414 (489)
56 4b4t_J 26S protease regulatory 98.0 5.5E-05 1.9E-09 76.2 13.9 178 157-358 148-354 (405)
57 2bjv_A PSP operon transcriptio 98.0 3.5E-05 1.2E-09 74.3 11.9 134 157-301 6-150 (265)
58 1ojl_A Transcriptional regulat 98.0 2.4E-05 8.2E-10 77.0 10.8 159 157-329 2-187 (304)
59 1qvr_A CLPB protein; coiled co 98.0 2.7E-05 9.4E-10 87.9 12.1 157 157-331 170-344 (854)
60 1lv7_A FTSH; alpha/beta domain 98.0 0.0002 6.9E-09 68.5 16.3 182 157-362 12-222 (257)
61 2w58_A DNAI, primosome compone 98.0 5E-06 1.7E-10 76.6 4.6 117 165-300 37-157 (202)
62 1ofh_A ATP-dependent HSL prote 97.9 6.4E-05 2.2E-09 74.0 12.7 153 157-331 15-214 (310)
63 4b4t_L 26S protease subunit RP 97.9 8.9E-05 3.1E-09 75.9 13.4 178 157-358 181-387 (437)
64 3pxi_A Negative regulator of g 97.9 0.00016 5.3E-09 80.7 16.5 150 157-333 180-339 (758)
65 1r6b_X CLPA protein; AAA+, N-t 97.9 0.00011 3.6E-09 82.1 15.1 156 157-332 186-362 (758)
66 4b4t_H 26S protease regulatory 97.9 0.00012 4.1E-09 74.8 14.0 177 158-358 210-415 (467)
67 4b4t_M 26S protease regulatory 97.9 7.6E-05 2.6E-09 76.3 11.8 176 157-357 181-386 (434)
68 3pxi_A Negative regulator of g 97.8 2.4E-05 8.1E-10 87.3 8.4 154 157-331 491-674 (758)
69 2ce7_A Cell division protein F 97.8 0.00019 6.6E-09 74.5 14.2 178 157-358 16-221 (476)
70 4b4t_I 26S protease regulatory 97.8 0.00018 6.2E-09 72.8 13.1 176 157-357 182-387 (437)
71 4b4t_K 26S protease regulatory 97.8 0.00027 9.2E-09 72.2 13.7 177 157-357 172-378 (428)
72 2kjq_A DNAA-related protein; s 97.7 2E-05 6.7E-10 68.7 4.2 23 184-206 37-59 (149)
73 2r62_A Cell division protease 97.6 1.9E-05 6.6E-10 76.2 3.3 157 157-333 11-197 (268)
74 3cf2_A TER ATPase, transitiona 97.6 0.00043 1.5E-08 76.2 13.9 178 157-358 204-407 (806)
75 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00021 7.2E-09 79.7 10.4 134 157-301 458-607 (758)
76 1qvr_A CLPB protein; coiled co 97.6 0.00029 9.8E-09 79.6 11.5 135 157-301 558-710 (854)
77 2r44_A Uncharacterized protein 97.4 0.00062 2.1E-08 67.7 11.1 153 157-334 27-200 (331)
78 1ypw_A Transitional endoplasmi 97.3 0.00092 3.1E-08 74.6 12.0 158 157-334 204-387 (806)
79 3t15_A Ribulose bisphosphate c 97.3 0.001 3.6E-08 64.8 10.5 25 182-206 35-59 (293)
80 2qgz_A Helicase loader, putati 97.2 0.00018 6.3E-09 70.7 4.1 42 163-206 134-175 (308)
81 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00033 1.1E-08 68.1 5.6 68 184-273 124-193 (331)
82 1um8_A ATP-dependent CLP prote 97.2 0.0021 7E-08 65.2 11.3 22 184-205 73-94 (376)
83 3m6a_A ATP-dependent protease 97.1 0.0019 6.4E-08 68.8 11.1 161 157-332 81-266 (543)
84 1iy2_A ATP-dependent metallopr 97.1 0.0081 2.8E-07 57.9 14.1 179 156-358 39-245 (278)
85 1jr3_D DNA polymerase III, del 97.0 0.0042 1.4E-07 62.0 12.2 157 182-363 17-183 (343)
86 2dhr_A FTSH; AAA+ protein, hex 97.0 0.01 3.5E-07 62.0 15.4 175 156-358 30-236 (499)
87 3nbx_X ATPase RAVA; AAA+ ATPas 97.0 0.0097 3.3E-07 62.2 15.1 154 157-332 22-196 (500)
88 1ixz_A ATP-dependent metallopr 97.0 0.0066 2.3E-07 57.6 12.8 178 157-358 16-221 (254)
89 2x8a_A Nuclear valosin-contain 97.0 0.0089 3E-07 57.5 13.4 155 157-332 10-191 (274)
90 2b8t_A Thymidine kinase; deoxy 96.9 0.001 3.6E-08 61.6 6.1 112 183-302 12-126 (223)
91 1g8p_A Magnesium-chelatase 38 96.9 0.0047 1.6E-07 61.7 11.3 45 157-206 24-68 (350)
92 2cvh_A DNA repair and recombin 96.9 0.0031 1.1E-07 58.2 9.2 84 183-272 20-115 (220)
93 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0052 1.8E-07 57.3 8.1 114 184-302 24-168 (235)
94 1ye8_A Protein THEP1, hypothet 96.5 0.011 3.7E-07 52.8 9.5 22 185-206 2-23 (178)
95 3hr8_A Protein RECA; alpha and 96.5 0.0061 2.1E-07 60.7 8.3 84 182-272 60-149 (356)
96 1g5t_A COB(I)alamin adenosyltr 96.4 0.0033 1.1E-07 56.6 5.3 117 184-302 29-163 (196)
97 3io5_A Recombination and repai 96.4 0.01 3.4E-07 57.6 8.7 84 185-273 30-122 (333)
98 2z43_A DNA repair and recombin 96.4 0.0097 3.3E-07 58.8 8.9 56 183-239 107-166 (324)
99 1rz3_A Hypothetical protein rb 96.3 0.0041 1.4E-07 56.8 5.7 42 162-205 3-44 (201)
100 1v5w_A DMC1, meiotic recombina 96.2 0.015 5E-07 58.0 9.3 56 182-238 121-180 (343)
101 2px0_A Flagellar biosynthesis 96.2 0.014 4.7E-07 56.8 8.9 86 182-271 104-191 (296)
102 3cf2_A TER ATPase, transitiona 96.2 0.032 1.1E-06 61.5 12.6 178 156-357 476-682 (806)
103 1n0w_A DNA repair protein RAD5 96.2 0.0093 3.2E-07 56.0 7.4 89 183-272 24-129 (243)
104 2i1q_A DNA repair and recombin 96.2 0.011 3.8E-07 58.3 8.2 89 182-271 97-213 (322)
105 2zr9_A Protein RECA, recombina 96.1 0.014 4.7E-07 58.2 8.4 85 182-273 60-150 (349)
106 1xp8_A RECA protein, recombina 96.1 0.014 4.8E-07 58.5 8.4 83 183-272 74-162 (366)
107 1cr0_A DNA primase/helicase; R 96.0 0.02 7E-07 55.6 9.0 23 184-206 36-58 (296)
108 1u0j_A DNA replication protein 95.9 0.048 1.6E-06 51.6 10.9 36 167-205 91-126 (267)
109 1u94_A RECA protein, recombina 95.9 0.014 4.6E-07 58.3 7.4 85 182-273 62-152 (356)
110 2cbz_A Multidrug resistance-as 95.9 0.054 1.9E-06 50.7 11.1 23 184-206 32-54 (237)
111 2pze_A Cystic fibrosis transme 95.9 0.11 3.7E-06 48.3 13.2 23 184-206 35-57 (229)
112 1gvn_B Zeta; postsegregational 95.8 0.009 3.1E-07 57.9 5.5 40 166-205 16-55 (287)
113 2wfh_A SLIT homolog 2 protein 95.8 0.017 5.7E-07 52.3 6.9 69 511-580 29-116 (193)
114 3tqc_A Pantothenate kinase; bi 95.7 0.035 1.2E-06 54.3 9.5 45 160-205 70-114 (321)
115 2orw_A Thymidine kinase; TMTK, 95.7 0.0016 5.4E-08 58.7 -0.4 22 184-205 4-25 (184)
116 2r9u_A Variable lymphocyte rec 95.6 0.019 6.5E-07 50.9 6.6 68 511-579 31-118 (174)
117 3lw7_A Adenylate kinase relate 95.6 0.0056 1.9E-07 54.1 3.1 20 184-203 2-21 (179)
118 1qhx_A CPT, protein (chloramph 95.6 0.0055 1.9E-07 54.5 3.0 22 184-205 4-25 (178)
119 3c8u_A Fructokinase; YP_612366 95.6 0.0089 3.1E-07 54.8 4.5 37 166-205 8-44 (208)
120 3e6j_A Variable lymphocyte rec 95.6 0.015 5.1E-07 54.2 6.1 33 547-579 114-148 (229)
121 3kb2_A SPBC2 prophage-derived 95.6 0.0057 1.9E-07 54.0 2.9 22 184-205 2-23 (173)
122 2p5t_B PEZT; postsegregational 95.6 0.011 3.6E-07 56.2 4.9 41 165-205 14-54 (253)
123 2ell_A Acidic leucine-rich nuc 95.6 0.0087 3E-07 52.6 4.0 66 513-580 49-134 (168)
124 3upu_A ATP-dependent DNA helic 95.6 0.021 7.1E-07 59.4 7.5 38 263-303 129-166 (459)
125 1ly1_A Polynucleotide kinase; 95.5 0.007 2.4E-07 53.9 3.3 22 184-205 3-24 (181)
126 1zp6_A Hypothetical protein AT 95.5 0.0086 2.9E-07 53.9 3.8 23 183-205 9-31 (191)
127 1ypw_A Transitional endoplasmi 95.4 0.0038 1.3E-07 69.7 1.4 50 157-206 477-534 (806)
128 3ice_A Transcription terminati 95.4 0.0098 3.4E-07 59.2 4.2 54 168-226 163-217 (422)
129 3hws_A ATP-dependent CLP prote 95.4 0.011 3.8E-07 59.4 4.7 48 158-205 16-73 (363)
130 3g39_A Variable lymphocyte rec 95.4 0.025 8.6E-07 49.9 6.6 68 511-579 28-115 (170)
131 2je0_A Acidic leucine-rich nuc 95.4 0.0077 2.6E-07 51.7 2.9 66 513-580 42-127 (149)
132 2v9t_B SLIT homolog 2 protein 95.4 0.024 8.1E-07 52.4 6.4 34 547-580 106-142 (220)
133 3jvv_A Twitching mobility prot 95.4 0.012 4.1E-07 58.7 4.6 111 184-307 124-236 (356)
134 4b8c_D Glucose-repressible alc 95.3 0.012 4.2E-07 65.0 5.1 66 513-579 247-329 (727)
135 1kgd_A CASK, peripheral plasma 95.3 0.0095 3.3E-07 53.2 3.4 22 184-205 6-27 (180)
136 3vaa_A Shikimate kinase, SK; s 95.3 0.0084 2.9E-07 54.5 3.1 23 183-205 25-47 (199)
137 1ex7_A Guanylate kinase; subst 95.3 0.0073 2.5E-07 54.2 2.6 22 184-205 2-23 (186)
138 3bh0_A DNAB-like replicative h 95.2 0.11 3.8E-06 50.8 11.2 52 183-238 68-119 (315)
139 3lda_A DNA repair protein RAD5 95.2 0.051 1.8E-06 55.0 8.9 56 183-239 178-237 (400)
140 3e6j_A Variable lymphocyte rec 95.2 0.031 1.1E-06 52.0 6.8 71 510-581 37-127 (229)
141 1pzn_A RAD51, DNA repair and r 95.2 0.053 1.8E-06 54.0 8.9 47 182-228 130-180 (349)
142 2rhm_A Putative kinase; P-loop 95.2 0.013 4.3E-07 52.8 3.9 24 182-205 4-27 (193)
143 1kag_A SKI, shikimate kinase I 95.2 0.0076 2.6E-07 53.3 2.3 22 184-205 5-26 (173)
144 1nks_A Adenylate kinase; therm 95.2 0.011 3.7E-07 53.2 3.4 22 184-205 2-23 (194)
145 3trf_A Shikimate kinase, SK; a 95.1 0.0095 3.3E-07 53.3 2.9 23 183-205 5-27 (185)
146 3vq2_A TLR4, TOLL-like recepto 95.1 0.02 6.7E-07 61.8 5.9 69 511-580 30-118 (606)
147 2o6r_A Variable lymphocyte rec 95.1 0.037 1.3E-06 49.0 6.8 16 563-578 121-136 (177)
148 3uie_A Adenylyl-sulfate kinase 95.1 0.014 4.6E-07 53.2 3.8 25 182-206 24-48 (200)
149 3tui_C Methionine import ATP-b 95.1 0.13 4.4E-06 51.2 11.1 22 184-205 55-76 (366)
150 2o6s_A Variable lymphocyte rec 95.1 0.036 1.2E-06 50.5 6.8 34 547-580 102-138 (208)
151 1odf_A YGR205W, hypothetical 3 95.0 0.021 7.2E-07 55.3 5.2 26 181-206 29-54 (290)
152 4a1f_A DNAB helicase, replicat 95.0 0.046 1.6E-06 53.9 7.6 52 183-238 46-97 (338)
153 3t61_A Gluconokinase; PSI-biol 95.0 0.01 3.4E-07 54.1 2.6 23 183-205 18-40 (202)
154 1uj2_A Uridine-cytidine kinase 95.0 0.013 4.5E-07 55.5 3.4 24 182-205 21-44 (252)
155 1p9a_G Platelet glycoprotein I 94.9 0.032 1.1E-06 54.0 6.2 19 561-579 119-137 (290)
156 3tau_A Guanylate kinase, GMP k 94.9 0.014 4.7E-07 53.5 3.4 24 183-206 8-31 (208)
157 1knq_A Gluconate kinase; ALFA/ 94.9 0.017 5.6E-07 51.2 3.8 23 183-205 8-30 (175)
158 1kht_A Adenylate kinase; phosp 94.9 0.013 4.3E-07 52.7 3.0 22 184-205 4-25 (192)
159 4eun_A Thermoresistant glucoki 94.9 0.014 4.7E-07 53.1 3.3 24 182-205 28-51 (200)
160 1vma_A Cell division protein F 94.9 0.078 2.7E-06 51.6 8.8 88 182-272 103-196 (306)
161 1uf9_A TT1252 protein; P-loop, 94.9 0.016 5.5E-07 52.6 3.7 24 182-205 7-30 (203)
162 3tr0_A Guanylate kinase, GMP k 94.9 0.014 4.7E-07 53.2 3.2 22 184-205 8-29 (205)
163 1ukz_A Uridylate kinase; trans 94.9 0.016 5.6E-07 52.7 3.7 24 182-205 14-37 (203)
164 1zuh_A Shikimate kinase; alpha 94.8 0.013 4.5E-07 51.5 2.9 24 182-205 6-29 (168)
165 4gp7_A Metallophosphoesterase; 94.8 0.014 4.9E-07 51.6 3.1 23 183-205 9-31 (171)
166 2ell_A Acidic leucine-rich nuc 94.8 0.045 1.5E-06 47.9 6.4 68 513-581 71-162 (168)
167 3iij_A Coilin-interacting nucl 94.8 0.012 4E-07 52.5 2.5 23 183-205 11-33 (180)
168 1tev_A UMP-CMP kinase; ploop, 94.8 0.015 5.2E-07 52.3 3.3 23 183-205 3-25 (196)
169 2qt1_A Nicotinamide riboside k 94.8 0.019 6.4E-07 52.5 3.9 24 182-205 20-43 (207)
170 2ze6_A Isopentenyl transferase 94.8 0.015 5E-07 55.2 3.2 22 184-205 2-23 (253)
171 2bdt_A BH3686; alpha-beta prot 94.8 0.016 5.6E-07 52.0 3.4 22 184-205 3-24 (189)
172 3asz_A Uridine kinase; cytidin 94.8 0.018 6.1E-07 52.8 3.7 24 182-205 5-28 (211)
173 2c95_A Adenylate kinase 1; tra 94.8 0.016 5.4E-07 52.3 3.2 23 183-205 9-31 (196)
174 2qor_A Guanylate kinase; phosp 94.7 0.012 4.2E-07 53.7 2.5 23 183-205 12-34 (204)
175 1y63_A LMAJ004144AAA protein; 94.7 0.016 5.4E-07 52.0 3.1 23 183-205 10-32 (184)
176 4g8a_A TOLL-like receptor 4; l 94.7 0.025 8.6E-07 61.1 5.3 34 511-545 50-84 (635)
177 3a00_A Guanylate kinase, GMP k 94.7 0.013 4.4E-07 52.7 2.5 22 184-205 2-23 (186)
178 1ny5_A Transcriptional regulat 94.7 0.3 1E-05 49.2 12.9 45 158-205 138-182 (387)
179 2j41_A Guanylate kinase; GMP, 94.7 0.018 6.1E-07 52.5 3.4 22 184-205 7-28 (207)
180 3dm5_A SRP54, signal recogniti 94.7 0.16 5.6E-06 51.8 10.8 25 182-206 99-123 (443)
181 2jaq_A Deoxyguanosine kinase; 94.7 0.016 5.4E-07 52.7 3.0 21 185-205 2-22 (205)
182 2v9t_B SLIT homolog 2 protein 94.7 0.04 1.4E-06 50.9 5.8 65 513-578 80-164 (220)
183 1via_A Shikimate kinase; struc 94.7 0.013 4.4E-07 52.0 2.3 21 185-205 6-26 (175)
184 1qf9_A UMP/CMP kinase, protein 94.6 0.022 7.7E-07 51.1 4.0 24 182-205 5-28 (194)
185 3a4m_A L-seryl-tRNA(SEC) kinas 94.6 0.018 6.1E-07 54.8 3.4 23 183-205 4-26 (260)
186 2xxa_A Signal recognition part 94.6 0.15 5.3E-06 52.1 10.6 25 182-206 99-123 (433)
187 3tlx_A Adenylate kinase 2; str 94.6 0.027 9.3E-07 53.0 4.6 24 182-205 28-51 (243)
188 3umf_A Adenylate kinase; rossm 94.6 0.019 6.7E-07 52.8 3.5 25 181-205 27-51 (217)
189 2if2_A Dephospho-COA kinase; a 94.6 0.017 5.8E-07 52.6 3.1 22 184-205 2-23 (204)
190 1sky_E F1-ATPase, F1-ATP synth 94.6 0.048 1.6E-06 56.0 6.6 62 169-235 141-203 (473)
191 3cm0_A Adenylate kinase; ATP-b 94.6 0.02 6.9E-07 51.2 3.5 23 183-205 4-26 (186)
192 1jjv_A Dephospho-COA kinase; P 94.6 0.019 6.7E-07 52.3 3.5 22 184-205 3-24 (206)
193 1w8a_A SLIT protein; signaling 94.6 0.039 1.4E-06 49.6 5.5 32 547-578 104-138 (192)
194 3m19_A Variable lymphocyte rec 94.6 0.05 1.7E-06 51.2 6.5 34 547-580 109-145 (251)
195 1tue_A Replication protein E1; 94.6 0.026 9E-07 51.0 4.1 37 166-206 45-81 (212)
196 2iyv_A Shikimate kinase, SK; t 94.5 0.013 4.4E-07 52.4 2.1 21 185-205 4-24 (184)
197 2v70_A SLIT-2, SLIT homolog 2 94.5 0.05 1.7E-06 50.2 6.2 66 514-580 58-143 (220)
198 2v70_A SLIT-2, SLIT homolog 2 94.5 0.04 1.4E-06 50.9 5.5 66 513-579 81-166 (220)
199 1cke_A CK, MSSA, protein (cyti 94.5 0.017 6E-07 53.5 3.0 22 184-205 6-27 (227)
200 2bwj_A Adenylate kinase 5; pho 94.5 0.018 6.1E-07 52.1 3.0 22 184-205 13-34 (199)
201 2plr_A DTMP kinase, probable t 94.5 0.021 7.1E-07 52.2 3.4 23 184-206 5-27 (213)
202 2cdn_A Adenylate kinase; phosp 94.5 0.021 7.3E-07 51.8 3.5 24 182-205 19-42 (201)
203 1lvg_A Guanylate kinase, GMP k 94.5 0.016 5.4E-07 52.7 2.5 22 184-205 5-26 (198)
204 2je0_A Acidic leucine-rich nuc 94.5 0.031 1.1E-06 47.8 4.3 67 513-580 17-102 (149)
205 4fcg_A Uncharacterized protein 94.5 0.053 1.8E-06 53.5 6.5 64 514-578 207-289 (328)
206 4ezg_A Putative uncharacterize 94.4 0.051 1.7E-06 49.1 5.9 32 547-579 138-172 (197)
207 1xjc_A MOBB protein homolog; s 94.4 0.021 7.2E-07 50.2 3.1 25 182-206 3-27 (169)
208 1fx0_B ATP synthase beta chain 94.4 0.13 4.4E-06 52.9 9.3 65 168-237 154-219 (498)
209 1e6c_A Shikimate kinase; phosp 94.4 0.016 5.4E-07 51.2 2.3 22 184-205 3-24 (173)
210 4ezg_A Putative uncharacterize 94.4 0.048 1.6E-06 49.2 5.6 66 513-580 66-151 (197)
211 2yvu_A Probable adenylyl-sulfa 94.4 0.026 9.1E-07 50.5 3.8 25 182-206 12-36 (186)
212 2bbw_A Adenylate kinase 4, AK4 94.4 0.021 7.2E-07 53.8 3.2 23 183-205 27-49 (246)
213 3ney_A 55 kDa erythrocyte memb 94.4 0.021 7.2E-07 51.6 3.1 24 182-205 18-41 (197)
214 2pez_A Bifunctional 3'-phospho 94.3 0.024 8.2E-07 50.4 3.4 24 182-205 4-27 (179)
215 4fcg_A Uncharacterized protein 94.3 0.038 1.3E-06 54.5 5.2 67 513-580 104-197 (328)
216 2hf9_A Probable hydrogenase ni 94.3 0.039 1.3E-06 51.0 4.9 25 182-206 37-61 (226)
217 2z81_A CD282 antigen, TOLL-lik 94.3 0.039 1.3E-06 58.6 5.6 67 512-579 25-111 (549)
218 2grj_A Dephospho-COA kinase; T 94.3 0.027 9.4E-07 50.8 3.7 25 181-205 10-34 (192)
219 2ga8_A Hypothetical 39.9 kDa p 94.3 0.044 1.5E-06 54.1 5.4 44 161-205 3-46 (359)
220 2vli_A Antibiotic resistance p 94.3 0.014 4.9E-07 52.0 1.8 23 183-205 5-27 (183)
221 2pt5_A Shikimate kinase, SK; a 94.3 0.022 7.6E-07 49.9 3.0 21 185-205 2-22 (168)
222 2pbr_A DTMP kinase, thymidylat 94.3 0.022 7.6E-07 51.2 3.0 21 185-205 2-22 (195)
223 4b8c_D Glucose-repressible alc 94.2 0.027 9.1E-07 62.2 4.2 68 513-581 224-308 (727)
224 1ziw_A TOLL-like receptor 3; i 94.2 0.056 1.9E-06 59.2 6.8 69 511-580 23-111 (680)
225 2z80_A TOLL-like receptor 2, v 94.2 0.04 1.4E-06 54.8 5.2 67 513-580 52-138 (353)
226 3v47_A TOLL-like receptor 5B a 94.2 0.039 1.3E-06 57.0 5.2 68 511-579 28-116 (455)
227 1aky_A Adenylate kinase; ATP:A 94.2 0.023 7.9E-07 52.5 3.1 23 183-205 4-26 (220)
228 3vkw_A Replicase large subunit 94.2 0.21 7E-06 50.9 10.2 105 180-300 158-268 (446)
229 1nn5_A Similar to deoxythymidy 94.2 0.026 8.8E-07 51.7 3.3 23 183-205 9-31 (215)
230 2wwf_A Thymidilate kinase, put 94.2 0.024 8.4E-07 51.8 3.1 24 183-206 10-33 (212)
231 3fwy_A Light-independent proto 94.2 0.027 9.3E-07 55.1 3.6 25 181-205 46-70 (314)
232 3aez_A Pantothenate kinase; tr 94.1 0.029 9.9E-07 54.9 3.8 24 182-205 89-112 (312)
233 1znw_A Guanylate kinase, GMP k 94.1 0.026 9E-07 51.6 3.2 22 184-205 21-42 (207)
234 3kl4_A SRP54, signal recogniti 94.1 0.18 6E-06 51.5 9.6 25 182-206 96-120 (433)
235 2jeo_A Uridine-cytidine kinase 94.1 0.031 1.1E-06 52.6 3.7 24 182-205 24-47 (245)
236 1w8a_A SLIT protein; signaling 94.1 0.059 2E-06 48.4 5.5 68 512-580 28-116 (192)
237 1a9n_A U2A', U2A'; complex (nu 94.1 0.042 1.4E-06 48.6 4.4 65 514-580 43-127 (176)
238 3t6q_A CD180 antigen; protein- 94.0 0.04 1.4E-06 59.4 5.0 70 510-580 30-119 (606)
239 2f6r_A COA synthase, bifunctio 94.0 0.033 1.1E-06 53.6 4.0 24 182-205 74-97 (281)
240 1gtv_A TMK, thymidylate kinase 94.0 0.017 5.7E-07 53.0 1.7 22 185-206 2-23 (214)
241 1xku_A Decorin; proteoglycan, 94.0 0.065 2.2E-06 52.7 6.2 68 513-581 192-278 (330)
242 1zd8_A GTP:AMP phosphotransfer 94.0 0.026 8.9E-07 52.4 3.0 23 183-205 7-29 (227)
243 2z0h_A DTMP kinase, thymidylat 94.0 0.027 9.3E-07 50.8 3.0 21 185-205 2-22 (197)
244 3dzd_A Transcriptional regulat 93.9 0.21 7.1E-06 50.0 9.7 132 157-300 129-271 (368)
245 1z6g_A Guanylate kinase; struc 93.9 0.023 7.9E-07 52.5 2.5 22 184-205 24-45 (218)
246 2wsm_A Hydrogenase expression/ 93.9 0.039 1.3E-06 50.7 4.1 39 163-206 15-53 (221)
247 3cmu_A Protein RECA, recombina 93.9 0.097 3.3E-06 63.0 8.2 84 182-272 1426-1515(2050)
248 3m19_A Variable lymphocyte rec 93.9 0.071 2.4E-06 50.2 6.0 32 547-578 157-191 (251)
249 3fb4_A Adenylate kinase; psych 93.9 0.028 9.6E-07 51.6 3.0 21 185-205 2-22 (216)
250 3e1s_A Exodeoxyribonuclease V, 93.9 0.14 4.6E-06 54.7 8.7 104 184-300 205-314 (574)
251 2o6s_A Variable lymphocyte rec 93.9 0.083 2.8E-06 48.0 6.2 66 513-579 76-161 (208)
252 1s96_A Guanylate kinase, GMP k 93.9 0.029 1E-06 51.8 3.1 23 183-205 16-38 (219)
253 2ffh_A Protein (FFH); SRP54, s 93.9 0.23 7.8E-06 50.6 9.9 24 183-206 98-121 (425)
254 3zyi_A Leucine-rich repeat-con 93.9 0.058 2E-06 55.8 5.7 69 511-580 73-161 (452)
255 2j37_W Signal recognition part 93.9 0.33 1.1E-05 50.6 11.3 26 181-206 99-124 (504)
256 1dce_A Protein (RAB geranylger 93.9 0.06 2E-06 57.5 5.9 67 513-580 463-547 (567)
257 1a9n_A U2A', U2A'; complex (nu 93.9 0.056 1.9E-06 47.8 4.8 32 547-578 115-152 (176)
258 2o6q_A Variable lymphocyte rec 93.8 0.098 3.3E-06 49.8 6.9 34 547-580 111-147 (270)
259 1zak_A Adenylate kinase; ATP:A 93.8 0.026 9E-07 52.2 2.7 23 183-205 5-27 (222)
260 4e22_A Cytidylate kinase; P-lo 93.8 0.031 1E-06 52.9 3.2 23 183-205 27-49 (252)
261 1htw_A HI0065; nucleotide-bind 93.8 0.036 1.2E-06 48.2 3.4 23 183-205 33-55 (158)
262 3dl0_A Adenylate kinase; phosp 93.8 0.03 1E-06 51.4 3.0 21 185-205 2-22 (216)
263 2v54_A DTMP kinase, thymidylat 93.8 0.031 1.1E-06 50.7 3.1 22 184-205 5-26 (204)
264 2q6t_A DNAB replication FORK h 93.8 0.2 6.7E-06 51.7 9.5 53 183-238 200-252 (444)
265 3l0o_A Transcription terminati 93.8 0.27 9.3E-06 48.9 9.8 53 167-224 163-216 (427)
266 2z63_A TOLL-like receptor 4, v 93.8 0.058 2E-06 57.5 5.7 33 547-579 102-137 (570)
267 2f1r_A Molybdopterin-guanine d 93.8 0.024 8E-07 50.1 2.1 22 184-205 3-24 (171)
268 1g41_A Heat shock protein HSLU 93.7 0.049 1.7E-06 55.7 4.6 49 157-205 15-72 (444)
269 3b5x_A Lipid A export ATP-bind 93.7 0.35 1.2E-05 51.7 11.5 22 184-205 370-391 (582)
270 3be4_A Adenylate kinase; malar 93.7 0.028 9.6E-07 51.8 2.6 22 184-205 6-27 (217)
271 1q57_A DNA primase/helicase; d 93.7 0.19 6.6E-06 52.7 9.4 54 182-238 241-294 (503)
272 1ozn_A Reticulon 4 receptor; N 93.7 0.078 2.7E-06 50.9 5.9 33 547-579 107-142 (285)
273 1m7g_A Adenylylsulfate kinase; 93.7 0.039 1.3E-06 50.5 3.5 24 182-205 24-47 (211)
274 2ck3_D ATP synthase subunit be 93.6 0.3 1E-05 50.0 10.2 65 168-237 142-207 (482)
275 4a74_A DNA repair and recombin 93.6 0.039 1.3E-06 51.1 3.5 24 182-205 24-47 (231)
276 1vht_A Dephospho-COA kinase; s 93.6 0.041 1.4E-06 50.7 3.6 23 183-205 4-26 (218)
277 1rj9_A FTSY, signal recognitio 93.6 0.039 1.3E-06 53.7 3.5 24 182-205 101-124 (304)
278 3bgw_A DNAB-like replicative h 93.5 0.41 1.4E-05 49.2 11.2 53 182-238 196-248 (444)
279 1ogq_A PGIP-2, polygalacturona 93.5 0.075 2.6E-06 51.9 5.4 33 547-579 127-162 (313)
280 2z66_A Variable lymphocyte rec 93.4 0.048 1.6E-06 53.0 3.9 19 561-579 121-139 (306)
281 3rfs_A Internalin B, repeat mo 93.4 0.1 3.4E-06 49.8 6.1 67 513-580 85-171 (272)
282 1ls1_A Signal recognition part 93.4 0.2 6.8E-06 48.5 8.3 24 183-206 98-121 (295)
283 2ehv_A Hypothetical protein PH 93.4 0.039 1.4E-06 51.8 3.2 22 184-205 31-52 (251)
284 1np6_A Molybdopterin-guanine d 93.4 0.042 1.4E-06 48.7 3.1 25 182-206 5-29 (174)
285 1tf7_A KAIC; homohexamer, hexa 93.4 0.068 2.3E-06 56.5 5.3 24 183-206 281-304 (525)
286 3llm_A ATP-dependent RNA helic 93.4 0.47 1.6E-05 44.0 10.6 89 184-273 77-187 (235)
287 4akg_A Glutathione S-transfera 93.4 0.31 1E-05 60.8 11.5 147 186-354 1270-1452(2695)
288 2ft3_A Biglycan; proteoglycan, 93.4 0.057 2E-06 53.2 4.4 35 547-581 243-279 (332)
289 2i3b_A HCR-ntpase, human cance 93.3 0.036 1.2E-06 49.8 2.6 22 185-206 3-24 (189)
290 3ake_A Cytidylate kinase; CMP 93.3 0.041 1.4E-06 50.0 3.0 21 185-205 4-24 (208)
291 3zyj_A Leucine-rich repeat-con 93.3 0.087 3E-06 54.2 5.8 69 511-580 62-150 (440)
292 3lnc_A Guanylate kinase, GMP k 93.3 0.027 9.4E-07 52.4 1.8 22 184-205 28-50 (231)
293 1sq5_A Pantothenate kinase; P- 93.3 0.051 1.8E-06 53.1 3.8 24 182-205 79-102 (308)
294 3p32_A Probable GTPase RV1496/ 93.2 0.085 2.9E-06 52.7 5.5 37 166-205 65-101 (355)
295 2o6q_A Variable lymphocyte rec 93.2 0.12 4.2E-06 49.1 6.4 67 513-580 85-171 (270)
296 2id5_A Lingo-1, leucine rich r 93.2 0.084 2.9E-06 54.9 5.6 68 511-579 30-117 (477)
297 3sr0_A Adenylate kinase; phosp 93.2 0.044 1.5E-06 50.0 3.0 21 185-205 2-22 (206)
298 2pcj_A ABC transporter, lipopr 93.2 0.046 1.6E-06 50.7 3.1 22 184-205 31-52 (224)
299 3d3q_A TRNA delta(2)-isopenten 93.2 0.046 1.6E-06 53.8 3.3 22 184-205 8-29 (340)
300 1e4v_A Adenylate kinase; trans 93.2 0.046 1.6E-06 50.2 3.1 21 185-205 2-22 (214)
301 3tif_A Uncharacterized ABC tra 93.2 0.045 1.5E-06 51.1 3.0 22 184-205 32-53 (235)
302 2xb4_A Adenylate kinase; ATP-b 93.1 0.045 1.5E-06 50.7 3.0 21 185-205 2-22 (223)
303 2r6a_A DNAB helicase, replicat 93.1 0.19 6.5E-06 52.0 8.0 50 183-235 203-252 (454)
304 1j8m_F SRP54, signal recogniti 93.1 0.2 6.9E-06 48.5 7.7 24 183-206 98-121 (297)
305 2onk_A Molybdate/tungstate ABC 93.1 0.049 1.7E-06 51.1 3.2 22 184-205 25-46 (240)
306 2xot_A Amphoterin-induced prot 93.1 0.098 3.4E-06 52.3 5.6 68 513-581 88-178 (361)
307 3a8t_A Adenylate isopentenyltr 93.1 0.059 2E-06 52.8 3.8 24 182-205 39-62 (339)
308 3nwj_A ATSK2; P loop, shikimat 93.0 0.038 1.3E-06 52.1 2.3 22 184-205 49-70 (250)
309 3r20_A Cytidylate kinase; stru 93.0 0.049 1.7E-06 50.6 3.0 23 183-205 9-31 (233)
310 1ogq_A PGIP-2, polygalacturona 93.0 0.076 2.6E-06 51.9 4.6 66 513-579 50-138 (313)
311 3b9q_A Chloroplast SRP recepto 93.0 0.058 2E-06 52.5 3.6 25 182-206 99-123 (302)
312 3exa_A TRNA delta(2)-isopenten 93.0 0.056 1.9E-06 52.4 3.4 23 183-205 3-25 (322)
313 1ak2_A Adenylate kinase isoenz 93.0 0.053 1.8E-06 50.5 3.2 23 183-205 16-38 (233)
314 2z62_A TOLL-like receptor 4, v 92.9 0.08 2.7E-06 50.6 4.6 67 513-580 76-163 (276)
315 3crm_A TRNA delta(2)-isopenten 92.9 0.053 1.8E-06 52.9 3.3 23 183-205 5-27 (323)
316 2z62_A TOLL-like receptor 4, v 92.9 0.1 3.4E-06 49.8 5.3 34 547-580 102-138 (276)
317 2wfh_A SLIT homolog 2 protein 92.9 0.14 4.7E-06 46.1 5.9 66 513-579 54-139 (193)
318 3a79_B TLR6, VLRB.59, TOLL-lik 92.9 0.12 4E-06 55.2 6.3 49 531-579 94-159 (562)
319 3j0a_A TOLL-like receptor 5; m 92.9 0.095 3.3E-06 59.0 5.8 33 547-579 99-136 (844)
320 3k1j_A LON protease, ATP-depen 92.9 0.055 1.9E-06 58.3 3.7 43 157-206 41-83 (604)
321 3vq2_A TLR4, TOLL-like recepto 92.9 0.084 2.9E-06 56.8 5.2 67 513-580 80-167 (606)
322 2wji_A Ferrous iron transport 92.9 0.084 2.9E-06 45.9 4.3 23 184-206 4-26 (165)
323 1dce_A Protein (RAB geranylger 92.8 0.09 3.1E-06 56.1 5.2 63 515-580 443-522 (567)
324 1ltq_A Polynucleotide kinase; 92.8 0.055 1.9E-06 52.5 3.3 22 184-205 3-24 (301)
325 3foz_A TRNA delta(2)-isopenten 92.8 0.069 2.4E-06 51.6 3.7 24 182-205 9-32 (316)
326 3vr4_D V-type sodium ATPase su 92.8 0.1 3.4E-06 53.2 5.1 98 168-271 140-257 (465)
327 3b85_A Phosphate starvation-in 92.7 0.045 1.5E-06 50.0 2.4 23 184-206 23-45 (208)
328 3gfo_A Cobalt import ATP-bindi 92.7 0.056 1.9E-06 51.8 3.0 22 184-205 35-56 (275)
329 1b0u_A Histidine permease; ABC 92.7 0.057 1.9E-06 51.4 3.0 22 184-205 33-54 (262)
330 4g8a_A TOLL-like receptor 4; l 92.6 0.1 3.4E-06 56.3 5.4 66 513-579 100-186 (635)
331 1zu4_A FTSY; GTPase, signal re 92.6 0.14 4.6E-06 50.3 5.8 25 182-206 104-128 (320)
332 3o6n_A APL1; leucine-rich repe 92.6 0.11 3.8E-06 52.4 5.4 67 513-580 93-179 (390)
333 2r9u_A Variable lymphocyte rec 92.6 0.17 5.7E-06 44.6 5.9 35 547-581 59-96 (174)
334 2zej_A Dardarin, leucine-rich 92.6 0.056 1.9E-06 48.1 2.8 22 185-206 4-25 (184)
335 3e70_C DPA, signal recognition 92.6 0.071 2.4E-06 52.4 3.7 25 182-206 128-152 (328)
336 1oix_A RAS-related protein RAB 92.6 0.063 2.1E-06 48.2 3.1 24 183-206 29-52 (191)
337 3hjn_A DTMP kinase, thymidylat 92.6 0.17 5.9E-06 45.7 6.0 22 185-206 2-23 (197)
338 1a7j_A Phosphoribulokinase; tr 92.6 0.032 1.1E-06 54.0 1.2 24 182-205 4-27 (290)
339 2o6r_A Variable lymphocyte rec 92.6 0.17 6E-06 44.4 6.0 69 512-581 27-115 (177)
340 3cmu_A Protein RECA, recombina 92.6 0.21 7.3E-06 60.1 8.3 85 182-273 382-472 (2050)
341 3zvl_A Bifunctional polynucleo 92.5 0.062 2.1E-06 55.0 3.3 24 182-205 257-280 (416)
342 2xot_A Amphoterin-induced prot 92.5 0.11 3.7E-06 51.9 5.1 67 513-580 64-150 (361)
343 1ji0_A ABC transporter; ATP bi 92.5 0.062 2.1E-06 50.4 3.0 22 184-205 33-54 (240)
344 4g1u_C Hemin import ATP-bindin 92.5 0.061 2.1E-06 51.2 3.0 22 184-205 38-59 (266)
345 1p9a_G Platelet glycoprotein I 92.5 0.17 5.8E-06 48.8 6.3 34 547-580 150-186 (290)
346 1g6h_A High-affinity branched- 92.5 0.062 2.1E-06 51.0 3.0 22 184-205 34-55 (257)
347 2d2e_A SUFC protein; ABC-ATPas 92.5 0.067 2.3E-06 50.5 3.2 22 184-205 30-51 (250)
348 1mv5_A LMRA, multidrug resista 92.5 0.068 2.3E-06 50.2 3.3 22 184-205 29-50 (243)
349 3ozx_A RNAse L inhibitor; ATP 92.5 0.77 2.6E-05 48.4 11.7 24 183-206 25-48 (538)
350 3rfs_A Internalin B, repeat mo 92.4 0.16 5.5E-06 48.4 5.9 67 513-580 109-195 (272)
351 2qmh_A HPR kinase/phosphorylas 92.4 0.072 2.5E-06 47.8 3.1 22 184-205 35-56 (205)
352 2olj_A Amino acid ABC transpor 92.4 0.064 2.2E-06 51.0 3.0 22 184-205 51-72 (263)
353 1yrb_A ATP(GTP)binding protein 92.4 0.083 2.8E-06 50.0 3.9 24 182-205 13-36 (262)
354 1sgw_A Putative ABC transporte 92.4 0.055 1.9E-06 49.7 2.5 22 184-205 36-57 (214)
355 2ff7_A Alpha-hemolysin translo 92.4 0.065 2.2E-06 50.4 3.0 22 184-205 36-57 (247)
356 3oja_B Anopheles plasmodium-re 92.3 0.12 4.1E-06 55.6 5.4 67 513-580 99-185 (597)
357 1ozn_A Reticulon 4 receptor; N 92.3 0.16 5.3E-06 48.7 5.8 68 513-580 80-167 (285)
358 2z7x_B TOLL-like receptor 1, v 92.3 0.1 3.5E-06 54.9 4.8 66 513-579 45-128 (520)
359 2eyu_A Twitching motility prot 92.3 0.076 2.6E-06 50.4 3.4 110 182-306 24-137 (261)
360 2zu0_C Probable ATP-dependent 92.3 0.071 2.4E-06 50.8 3.2 22 184-205 47-68 (267)
361 2yhs_A FTSY, cell division pro 92.3 0.15 5E-06 52.7 5.7 25 182-206 292-316 (503)
362 2dyk_A GTP-binding protein; GT 92.3 0.083 2.8E-06 45.4 3.4 23 184-206 2-24 (161)
363 3o6n_A APL1; leucine-rich repe 92.3 0.085 2.9E-06 53.2 4.0 67 513-580 248-332 (390)
364 2ged_A SR-beta, signal recogni 92.3 0.086 2.9E-06 47.1 3.6 25 182-206 47-71 (193)
365 1vpl_A ABC transporter, ATP-bi 92.2 0.069 2.4E-06 50.5 3.0 22 184-205 42-63 (256)
366 2og2_A Putative signal recogni 92.2 0.081 2.8E-06 52.6 3.6 25 182-206 156-180 (359)
367 2dr3_A UPF0273 protein PH0284; 92.2 0.079 2.7E-06 49.5 3.4 37 184-222 24-60 (247)
368 2ghi_A Transport protein; mult 92.2 0.071 2.4E-06 50.6 3.0 22 184-205 47-68 (260)
369 2ixe_A Antigen peptide transpo 92.2 0.071 2.4E-06 51.0 3.0 22 184-205 46-67 (271)
370 2v9p_A Replication protein E1; 92.2 0.074 2.5E-06 51.6 3.2 23 183-205 126-148 (305)
371 2z63_A TOLL-like receptor 4, v 92.1 0.13 4.4E-06 54.7 5.4 67 513-580 76-163 (570)
372 2iw3_A Elongation factor 3A; a 92.1 1.1 3.7E-05 50.4 12.8 121 184-308 462-611 (986)
373 1h6u_A Internalin H; cell adhe 92.1 0.18 6.3E-06 49.0 6.1 33 547-580 131-165 (308)
374 2fz4_A DNA repair protein RAD2 92.1 0.44 1.5E-05 44.3 8.4 104 186-300 111-227 (237)
375 3g39_A Variable lymphocyte rec 92.1 0.19 6.5E-06 44.0 5.6 35 547-581 56-93 (170)
376 2qi9_C Vitamin B12 import ATP- 92.1 0.074 2.5E-06 50.1 3.0 22 184-205 27-48 (249)
377 2f9l_A RAB11B, member RAS onco 92.1 0.069 2.4E-06 48.2 2.7 24 183-206 5-28 (199)
378 1q3t_A Cytidylate kinase; nucl 92.1 0.079 2.7E-06 49.4 3.2 24 182-205 15-38 (236)
379 1nlf_A Regulatory protein REPA 92.0 0.081 2.8E-06 50.8 3.3 22 184-205 31-52 (279)
380 4fmz_A Internalin; leucine ric 92.0 0.16 5.5E-06 50.1 5.7 61 513-576 66-142 (347)
381 4eaq_A DTMP kinase, thymidylat 92.0 0.094 3.2E-06 48.7 3.6 25 182-206 25-49 (229)
382 2nq2_C Hypothetical ABC transp 92.0 0.078 2.7E-06 50.1 3.0 23 184-206 32-54 (253)
383 2yz2_A Putative ABC transporte 92.0 0.078 2.7E-06 50.5 3.0 22 184-205 34-55 (266)
384 1h6t_A Internalin B; cell adhe 91.9 0.18 6.2E-06 48.6 5.7 18 562-579 174-191 (291)
385 2ihy_A ABC transporter, ATP-bi 91.9 0.079 2.7E-06 50.8 3.0 22 184-205 48-69 (279)
386 3cmw_A Protein RECA, recombina 91.9 0.21 7.1E-06 59.4 7.1 81 184-271 384-470 (1706)
387 2wjg_A FEOB, ferrous iron tran 91.9 0.11 3.7E-06 46.2 3.8 24 183-206 7-30 (188)
388 2vp4_A Deoxynucleoside kinase; 91.8 0.081 2.8E-06 49.2 2.9 24 182-205 19-42 (230)
389 1svm_A Large T antigen; AAA+ f 91.8 0.15 5.2E-06 51.1 5.0 24 182-205 168-191 (377)
390 2ocp_A DGK, deoxyguanosine kin 91.8 0.099 3.4E-06 48.9 3.5 22 184-205 3-24 (241)
391 1xeu_A Internalin C; cellular 91.8 0.23 7.9E-06 47.0 6.2 33 547-580 130-164 (263)
392 1z2a_A RAS-related protein RAB 91.8 0.11 3.7E-06 45.0 3.5 24 183-206 5-28 (168)
393 2lkc_A Translation initiation 91.7 0.14 4.9E-06 44.8 4.4 25 182-206 7-31 (178)
394 1h6t_A Internalin B; cell adhe 91.7 0.22 7.7E-06 47.9 6.1 65 513-580 90-170 (291)
395 2ce2_X GTPase HRAS; signaling 91.7 0.091 3.1E-06 45.2 3.0 22 185-206 5-26 (166)
396 3zyj_A Leucine-rich repeat-con 91.7 0.22 7.6E-06 51.1 6.4 32 547-579 187-220 (440)
397 3sop_A Neuronal-specific septi 91.6 0.097 3.3E-06 50.0 3.3 21 185-205 4-24 (270)
398 3e4g_A ATP synthase subunit S, 91.6 0.27 9.2E-06 43.3 5.9 66 514-579 62-153 (176)
399 3qf4_A ABC transporter, ATP-bi 91.6 0.65 2.2E-05 49.6 10.0 22 184-205 370-391 (587)
400 2xwt_C Thyrotropin receptor; s 91.6 0.13 4.6E-06 47.8 4.2 32 547-579 107-144 (239)
401 3gqb_B V-type ATP synthase bet 91.5 0.18 6E-06 51.3 5.2 100 168-271 136-260 (464)
402 2nzj_A GTP-binding protein REM 91.5 0.14 4.6E-06 44.8 3.9 24 183-206 4-27 (175)
403 2xau_A PRE-mRNA-splicing facto 91.5 1.2 4E-05 49.3 12.2 34 165-205 98-131 (773)
404 1xx6_A Thymidine kinase; NESG, 91.5 0.092 3.2E-06 47.2 2.8 108 183-302 8-118 (191)
405 2gj8_A MNME, tRNA modification 91.4 0.1 3.6E-06 45.8 3.1 23 184-206 5-27 (172)
406 3eph_A TRNA isopentenyltransfe 91.4 0.1 3.5E-06 52.4 3.4 22 184-205 3-24 (409)
407 4edh_A DTMP kinase, thymidylat 91.4 0.26 9E-06 45.0 5.9 24 183-206 6-29 (213)
408 3v47_A TOLL-like receptor 5B a 91.4 0.15 5.2E-06 52.5 4.8 32 547-578 373-407 (455)
409 3q72_A GTP-binding protein RAD 91.4 0.096 3.3E-06 45.3 2.8 22 185-206 4-25 (166)
410 1nij_A Hypothetical protein YJ 91.4 0.11 3.7E-06 51.0 3.4 25 182-206 3-27 (318)
411 2pjz_A Hypothetical protein ST 91.3 0.1 3.4E-06 49.6 3.0 22 184-205 31-52 (263)
412 1z08_A RAS-related protein RAB 91.3 0.14 4.7E-06 44.5 3.7 24 183-206 6-29 (170)
413 1m9s_A Internalin B; cell inva 91.3 0.2 6.9E-06 53.8 5.7 18 562-579 171-188 (605)
414 2erx_A GTP-binding protein DI- 91.2 0.11 3.8E-06 45.1 3.0 22 185-206 5-26 (172)
415 3o53_A Protein LRIM1, AGAP0063 91.2 0.16 5.3E-06 49.7 4.4 32 547-578 216-249 (317)
416 1tq4_A IIGP1, interferon-induc 91.2 0.14 4.7E-06 52.0 4.0 24 182-205 68-91 (413)
417 1w36_D RECD, exodeoxyribonucle 91.2 0.34 1.1E-05 52.1 7.3 38 264-304 264-301 (608)
418 3nh6_A ATP-binding cassette SU 91.1 0.085 2.9E-06 51.3 2.3 22 184-205 81-102 (306)
419 2r9v_A ATP synthase subunit al 91.1 0.34 1.2E-05 49.9 6.8 95 168-271 164-276 (515)
420 2z7x_B TOLL-like receptor 1, v 91.1 0.17 5.9E-06 53.2 4.9 67 511-580 19-104 (520)
421 1u8z_A RAS-related protein RAL 91.1 0.11 3.8E-06 44.8 2.9 23 184-206 5-27 (168)
422 3zyi_A Leucine-rich repeat-con 91.1 0.27 9.2E-06 50.7 6.3 32 547-579 198-231 (452)
423 1fzq_A ADP-ribosylation factor 91.0 0.15 5.2E-06 45.1 3.8 25 182-206 15-39 (181)
424 3end_A Light-independent proto 91.0 0.13 4.4E-06 50.1 3.6 42 181-224 39-80 (307)
425 3vr4_A V-type sodium ATPase ca 91.0 0.48 1.6E-05 49.5 7.9 59 168-234 221-280 (600)
426 1svi_A GTP-binding protein YSX 91.0 0.14 4.9E-06 45.6 3.7 25 182-206 22-46 (195)
427 1m7b_A RND3/RHOE small GTP-bin 91.0 0.12 4E-06 45.9 3.0 24 183-206 7-30 (184)
428 3oja_B Anopheles plasmodium-re 91.0 0.26 8.8E-06 52.9 6.3 33 547-579 125-160 (597)
429 3q85_A GTP-binding protein REM 91.0 0.16 5.3E-06 44.1 3.8 21 185-205 4-24 (169)
430 1kao_A RAP2A; GTP-binding prot 91.0 0.11 3.8E-06 44.8 2.8 22 185-206 5-26 (167)
431 1p5z_B DCK, deoxycytidine kina 91.0 0.083 2.9E-06 50.2 2.1 24 182-205 23-46 (263)
432 3kta_A Chromosome segregation 91.0 0.13 4.5E-06 45.6 3.3 21 185-205 28-48 (182)
433 1c1y_A RAS-related protein RAP 91.0 0.11 3.8E-06 44.8 2.8 22 185-206 5-26 (167)
434 2qe7_A ATP synthase subunit al 90.9 0.34 1.2E-05 49.9 6.6 96 168-271 151-263 (502)
435 3con_A GTPase NRAS; structural 90.9 0.11 3.8E-06 46.2 2.8 22 185-206 23-44 (190)
436 3oaa_A ATP synthase subunit al 90.9 0.53 1.8E-05 48.4 8.0 96 168-271 151-263 (513)
437 2bbs_A Cystic fibrosis transme 90.9 0.12 4.1E-06 49.9 3.1 23 184-206 65-87 (290)
438 2qm8_A GTPase/ATPase; G protei 90.9 0.22 7.4E-06 49.2 5.1 24 182-205 54-77 (337)
439 1ek0_A Protein (GTP-binding pr 90.9 0.12 4.1E-06 44.8 2.9 22 185-206 5-26 (170)
440 2ft3_A Biglycan; proteoglycan, 90.9 0.31 1.1E-05 47.8 6.3 65 514-579 79-160 (332)
441 2ifg_A High affinity nerve gro 90.9 0.17 5.7E-06 50.1 4.3 59 514-579 32-93 (347)
442 1z0j_A RAB-22, RAS-related pro 90.9 0.12 4.1E-06 44.8 2.9 23 184-206 7-29 (170)
443 2cxx_A Probable GTP-binding pr 90.8 0.13 4.4E-06 45.7 3.1 22 185-206 3-24 (190)
444 2j9r_A Thymidine kinase; TK1, 90.8 0.23 7.9E-06 45.2 4.7 110 183-303 28-139 (214)
445 3fvq_A Fe(3+) IONS import ATP- 90.8 0.13 4.4E-06 51.1 3.3 22 184-205 31-52 (359)
446 1fx0_A ATP synthase alpha chai 90.8 0.46 1.6E-05 49.0 7.4 83 185-271 165-264 (507)
447 2www_A Methylmalonic aciduria 90.7 0.15 5E-06 50.8 3.7 24 182-205 73-96 (349)
448 3tw8_B RAS-related protein RAB 90.7 0.15 5.2E-06 44.7 3.5 25 182-206 8-32 (181)
449 3ihw_A Centg3; RAS, centaurin, 90.7 0.13 4.3E-06 45.8 2.9 23 184-206 21-43 (184)
450 1nrj_B SR-beta, signal recogni 90.7 0.14 4.6E-06 46.9 3.2 25 182-206 11-35 (218)
451 1r8s_A ADP-ribosylation factor 90.7 0.12 4.2E-06 44.5 2.8 21 186-206 3-23 (164)
452 3oja_A Leucine-rich immune mol 90.6 0.17 5.9E-06 52.8 4.4 33 547-579 193-227 (487)
453 3pqc_A Probable GTP-binding pr 90.6 0.17 5.7E-06 45.1 3.7 24 183-206 23-46 (195)
454 1wms_A RAB-9, RAB9, RAS-relate 90.6 0.13 4.5E-06 45.0 2.9 24 183-206 7-30 (177)
455 1h6u_A Internalin H; cell adhe 90.6 0.3 1E-05 47.4 5.8 65 513-580 129-209 (308)
456 3f9v_A Minichromosome maintena 90.6 0.084 2.9E-06 56.6 1.8 21 185-205 329-349 (595)
457 2fn4_A P23, RAS-related protei 90.6 0.19 6.4E-06 44.0 4.0 25 182-206 8-32 (181)
458 1f6b_A SAR1; gtpases, N-termin 90.6 0.12 4E-06 46.6 2.6 23 184-206 26-48 (198)
459 2yv5_A YJEQ protein; hydrolase 90.5 0.2 6.9E-06 48.6 4.4 31 166-204 156-186 (302)
460 1g8f_A Sulfate adenylyltransfe 90.5 0.19 6.4E-06 52.4 4.4 46 158-206 373-418 (511)
461 2hxs_A RAB-26, RAS-related pro 90.5 0.14 4.8E-06 44.8 3.0 24 183-206 6-29 (178)
462 3c5c_A RAS-like protein 12; GD 90.5 0.13 4.6E-06 45.7 2.9 23 184-206 22-44 (187)
463 1ky3_A GTP-binding protein YPT 90.5 0.17 5.9E-06 44.3 3.7 25 182-206 7-31 (182)
464 1m2o_B GTP-binding protein SAR 90.5 0.13 4.6E-06 45.9 2.9 23 184-206 24-46 (190)
465 1o6v_A Internalin A; bacterial 90.4 0.28 9.5E-06 50.8 5.7 65 513-580 68-148 (466)
466 1r2q_A RAS-related protein RAB 90.4 0.14 4.7E-06 44.4 2.8 23 184-206 7-29 (170)
467 1m9s_A Internalin B; cell inva 90.4 0.3 1E-05 52.4 6.0 65 513-580 87-167 (605)
468 3mfy_A V-type ATP synthase alp 90.4 0.34 1.2E-05 50.4 6.0 59 168-234 216-275 (588)
469 2afh_E Nitrogenase iron protei 90.3 0.17 5.8E-06 48.7 3.7 24 183-206 2-25 (289)
470 2z66_A Variable lymphocyte rec 90.3 0.23 7.7E-06 48.1 4.6 50 531-580 169-237 (306)
471 4glp_A Monocyte differentiatio 90.3 0.31 1.1E-05 47.3 5.6 46 534-579 142-210 (310)
472 1cp2_A CP2, nitrogenase iron p 90.3 0.28 9.7E-06 46.5 5.2 38 184-223 2-39 (269)
473 2y8e_A RAB-protein 6, GH09086P 90.3 0.15 5.2E-06 44.6 3.0 22 185-206 16-37 (179)
474 1z47_A CYSA, putative ABC-tran 90.3 0.15 5.1E-06 50.6 3.2 22 184-205 42-63 (355)
475 2bme_A RAB4A, RAS-related prot 90.2 0.15 5.1E-06 45.1 3.0 24 183-206 10-33 (186)
476 3gmt_A Adenylate kinase; ssgci 90.2 0.14 4.8E-06 47.3 2.8 23 183-205 8-30 (230)
477 4eco_A Uncharacterized protein 90.2 0.33 1.1E-05 52.6 6.2 66 514-580 489-580 (636)
478 2iwr_A Centaurin gamma 1; ANK 90.2 0.12 4E-06 45.4 2.2 23 184-206 8-30 (178)
479 1upt_A ARL1, ADP-ribosylation 90.2 0.15 5.2E-06 44.2 2.9 23 184-206 8-30 (171)
480 4dsu_A GTPase KRAS, isoform 2B 90.2 0.15 5.1E-06 45.1 2.9 22 185-206 6-27 (189)
481 3t6q_A CD180 antigen; protein- 90.2 0.22 7.5E-06 53.5 4.8 15 565-579 152-166 (606)
482 1g16_A RAS-related protein SEC 90.2 0.2 6.9E-06 43.3 3.7 23 184-206 4-26 (170)
483 4hlc_A DTMP kinase, thymidylat 90.2 0.21 7.3E-06 45.4 4.0 23 184-206 3-25 (205)
484 1pui_A ENGB, probable GTP-bind 90.1 0.1 3.6E-06 47.3 1.9 24 183-206 26-49 (210)
485 1z0f_A RAB14, member RAS oncog 90.1 0.15 5E-06 44.7 2.8 24 183-206 15-38 (179)
486 2r8r_A Sensor protein; KDPD, P 90.1 0.14 4.9E-06 46.9 2.7 104 185-302 8-127 (228)
487 2h92_A Cytidylate kinase; ross 90.1 0.13 4.3E-06 47.2 2.5 22 184-205 4-25 (219)
488 2p67_A LAO/AO transport system 90.1 0.29 1E-05 48.4 5.2 24 182-205 55-78 (341)
489 2c61_A A-type ATP synthase non 90.1 0.25 8.6E-06 50.5 4.8 100 168-271 141-258 (469)
490 3t5g_A GTP-binding protein RHE 90.0 0.19 6.5E-06 44.2 3.5 24 183-206 6-29 (181)
491 3kkq_A RAS-related protein M-R 90.0 0.19 6.3E-06 44.3 3.4 24 183-206 18-41 (183)
492 2cjw_A GTP-binding protein GEM 90.0 0.16 5.3E-06 45.6 3.0 23 183-205 6-28 (192)
493 2v3c_C SRP54, signal recogniti 90.0 0.11 3.6E-06 53.3 2.0 25 182-206 98-122 (432)
494 1xeu_A Internalin C; cellular 90.0 0.15 5.3E-06 48.3 3.0 63 513-579 41-119 (263)
495 3cbq_A GTP-binding protein REM 90.0 0.13 4.3E-06 46.3 2.3 24 182-205 22-45 (195)
496 2axn_A 6-phosphofructo-2-kinas 90.0 0.17 5.7E-06 53.2 3.6 24 182-205 34-57 (520)
497 3ch4_B Pmkase, phosphomevalona 90.0 0.22 7.5E-06 44.9 3.8 24 182-205 10-33 (202)
498 3rlf_A Maltose/maltodextrin im 90.0 0.16 5.5E-06 50.8 3.2 22 184-205 30-51 (381)
499 1lw7_A Transcriptional regulat 89.9 0.16 5.5E-06 50.8 3.3 23 183-205 170-192 (365)
500 2yyz_A Sugar ABC transporter, 89.9 0.16 5.6E-06 50.4 3.2 22 184-205 30-51 (359)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.7e-51 Score=439.41 Aligned_cols=319 Identities=19% Similarity=0.251 Sum_probs=258.0
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc--CccccCCcCceeEEEecCCC--cHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN--DDRIKRHFEFRIWVFVFEDF--NVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~l~~ 232 (581)
+..|||+.++++|.++|..... ...++|+|+||||+||||||+++|+ +.++..+|+.++||++++.+ +...++.
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~--~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCD--LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT--SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccC--CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 3335999999999999976422 4679999999999999999999998 67899999999999999885 8899999
Q ss_pred HHHHhhCCCCC-------CcCCHHHHHHHHHHHhcCc-ceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhH
Q 043779 233 DIITSSGGNVS-------EAWNLDLLQRRLKDMLDGK-RYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKV 304 (581)
Q Consensus 233 ~il~~l~~~~~-------~~~~~~~l~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 304 (581)
.|+.+++.... +..+.+.+...+++.+.++ |+||||||||+.+...|... +||+||||||+..+
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEI 277 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHH
Confidence 99999976421 2335667889999999996 99999999998654344422 79999999999999
Q ss_pred HHhhC-CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCCCHHHHHHHHhc
Q 043779 305 ASIVG-TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKSNENEWLHVKDS 383 (581)
Q Consensus 305 ~~~~~-~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~~~~ 383 (581)
+..++ ...+|+|++|+.++||+||.++++... .++++.+++.+|+++|+|+||||+++|+.|+.+ . .+|...+.+
T Consensus 278 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~ 353 (549)
T 2a5y_B 278 SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNN 353 (549)
T ss_dssp GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHH
T ss_pred HHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHH
Confidence 98876 335799999999999999999987653 246788999999999999999999999999765 2 334344443
Q ss_pred cCcCCCCCCCChhHHHHHHHhcCChHhHHHHH-----------HhcCCCCCCccchhHHHHHHHHc--CCcccCC-CCCH
Q 043779 384 ELWNLPQEENSILPALRLSYANLPVELRQCFA-----------FCAVFPKNAEIKKERLIHLWMAN--GFISSKG-SLEA 449 (581)
Q Consensus 384 ~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-----------~~s~fp~~~~i~~~~Li~~w~a~--g~i~~~~-~~~~ 449 (581)
..+.. ....+..++.+||++||+++|.||+ |||+||+++.|+ +.+|+|+ ||+...+ +.+.
T Consensus 354 ~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred Hhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 33322 1345888899999999999999999 999999999999 8999999 9998766 5667
Q ss_pred HHHHHHHHHHHHHcCCceeecCCCCCccCCeEEeChhHHHHHHHhhcccee
Q 043779 450 EAVGNEIFNELYWRSLIQDFAGDNGSTYNQIYKMHDLVHDLAQSIAGDECC 500 (581)
Q Consensus 450 ~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e~~ 500 (581)
+++++ ||++|+++|||+....+ .. ..|+|||+||+||++++.++++
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~-~~---~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRM-PV---LTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECS-SS---CEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCC-Cc---eEEEeChHHHHHHHHHHHHHHH
Confidence 88888 99999999999987643 11 4599999999999999988876
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.6e-40 Score=363.71 Aligned_cols=285 Identities=19% Similarity=0.234 Sum_probs=227.1
Q ss_pred ccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCc-eeEEEecCCCcHhHHHHHHHH
Q 043779 158 EVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF-RIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~l~~~il~ 236 (581)
..|||+.++++|.++|... +..++|+|+||||+||||||++++++.++..+|+. ++|+++++.++...++..++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999853 24689999999999999999999987778889997 889999999988888777776
Q ss_pred hhCC---CCC---C-----cCCHHHHHHHHHHHh---cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 237 SSGG---NVS---E-----AWNLDLLQRRLKDML---DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 237 ~l~~---~~~---~-----~~~~~~l~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
.+.. ... . ..+.+.+...++..+ .++|+||||||+|+ ...|+.+ + +||+||||||+.
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccCh
Confidence 4321 110 0 113455666777765 68999999999997 3556554 2 689999999999
Q ss_pred hHHHhhCCCCeeeCC------CCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCC-CHH
Q 043779 303 KVASIVGTLPVYRLS------DLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKS-NEN 375 (581)
Q Consensus 303 ~v~~~~~~~~~~~l~------~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~-~~~ 375 (581)
.++..+.....|.++ +|+.+|||+||.+..... .. ++..+| |+|+||||+++|+.|+.+. +..
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQ---DLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----TT---THHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC----HH---HHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 988655433456666 999999999999984321 11 233333 9999999999999999885 577
Q ss_pred HHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHh-HHHHHHhcCCCCCCccchhHHHHHHHHcCCcccCCCCCHHHHHH
Q 043779 376 EWLHVKDSELWNLPQEENSILPALRLSYANLPVEL-RQCFAFCAVFPKNAEIKKERLIHLWMANGFISSKGSLEAEAVGN 454 (581)
Q Consensus 376 ~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~ 454 (581)
.|... ....+..+|.+||+.||++. |.||++||+||+++.|+.+.++.+|+++| ++.++
T Consensus 346 eW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe 405 (1221)
T 1vt4_I 346 NWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVM 405 (1221)
T ss_dssp HHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHH
T ss_pred HHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHH
Confidence 88652 13569999999999999999 99999999999999999999999998877 24588
Q ss_pred HHHHHHHHcCCceeecCCCCCccCCeEEeChhHHHHH
Q 043779 455 EIFNELYWRSLIQDFAGDNGSTYNQIYKMHDLVHDLA 491 (581)
Q Consensus 455 ~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdlv~~~~ 491 (581)
.+|++|+++|||+.... . ..|+||||+++++
T Consensus 406 ~~L~eLvdRSLLq~d~~---~---~rYrMHDLllELr 436 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQPK---E---STISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHTSSSSSBCSS---S---SEEBCCCHHHHHH
T ss_pred HHHHHHHhhCCEEEeCC---C---CEEEehHHHHHHh
Confidence 99999999999997421 1 4599999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-39 Score=386.59 Aligned_cols=313 Identities=21% Similarity=0.281 Sum_probs=246.1
Q ss_pred cccCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc-cCCcC-ceeEEEecCCCc--Hh
Q 043779 153 VVAQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI-KRHFE-FRIWVFVFEDFN--VR 228 (581)
Q Consensus 153 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~-~~~wv~v~~~~~--~~ 228 (581)
+.+++.||||++++++|.++|.... +..++|+|+||||+||||||++++++.+. ..+|. .++|+++++..+ ..
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~---~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN---GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT---TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc---CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 3445679999999999999997543 36789999999999999999999997543 55565 456999988544 44
Q ss_pred HHHHHHHHhhCCCC----CCcCCHHHHHHHHHHHhcCc--ceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 229 RLMTDIITSSGGNV----SEAWNLDLLQRRLKDMLDGK--RYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 229 ~l~~~il~~l~~~~----~~~~~~~~l~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
..+..++..+.... ....+.+.+...++..+.++ |+||||||+|+. ..|. ...+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEEEcCCH
Confidence 45666777765432 23456788899999999877 999999999864 2332 236789999999999
Q ss_pred hHHHh-hCCCCeeeCCC-CChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCCCHHHHHHH
Q 043779 303 KVASI-VGTLPVYRLSD-LSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKSNENEWLHV 380 (581)
Q Consensus 303 ~v~~~-~~~~~~~~l~~-L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~ 380 (581)
.++.. ++....+++.+ |+.+|+++||...++... +.+.+++.+|+++|+|+||||+++|++|+.++. .|...
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~--~~~~~ 341 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN--RWAYY 341 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS--CHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh--HHHHH
Confidence 99854 45566899996 999999999999885433 233367999999999999999999999987763 45444
Q ss_pred Hhcc---Cc-CCCC----CCCChhHHHHHHHhcCChHhHHHHHHhcCCCCCCccchhHHHHHHHHcCCcccCCCCCHHHH
Q 043779 381 KDSE---LW-NLPQ----EENSILPALRLSYANLPVELRQCFAFCAVFPKNAEIKKERLIHLWMANGFISSKGSLEAEAV 452 (581)
Q Consensus 381 ~~~~---~~-~~~~----~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~ 452 (581)
+... .+ .+.. ....+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~ 410 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEE 410 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHH
Confidence 4332 11 1111 113588999999999999999999999999999999999999999543 578
Q ss_pred HHHHHHHHHHcCCceeecCCCCCccCCeEEeChhHHHHHHHhhccc
Q 043779 453 GNEIFNELYWRSLIQDFAGDNGSTYNQIYKMHDLVHDLAQSIAGDE 498 (581)
Q Consensus 453 ~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e 498 (581)
++.+|++|+++|||+....+ .. ..|+||++||++++..+.+|
T Consensus 411 ~~~~l~~L~~~sl~~~~~~~-~~---~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 411 VEDILQEFVNKSLLFCNRNG-KS---FCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHTTSCEEEESS-SS---EEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccceEEecCC-Cc---eEEEecHHHHHHHHhhhhHH
Confidence 89999999999999976532 11 24999999999999998776
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=330.87 Aligned_cols=307 Identities=22% Similarity=0.285 Sum_probs=231.9
Q ss_pred cCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc-cCCcC-ceeEEEecCCCcHhHHHH
Q 043779 155 AQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI-KRHFE-FRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 155 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~-~~~wv~v~~~~~~~~l~~ 232 (581)
.++.||||+.++++|.++|.... +..++|+|+||||+||||||.+++++.++ ..+|+ .++|++++... ...++.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~ 197 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK---GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLM 197 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST---TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc---CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHH
Confidence 45679999999999999997542 35789999999999999999999997655 67895 68899998763 333333
Q ss_pred ---HHHHhhCCC----CCCcCCHHHHHHHHHHHhcC--cceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh
Q 043779 233 ---DIITSSGGN----VSEAWNLDLLQRRLKDMLDG--KRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK 303 (581)
Q Consensus 233 ---~il~~l~~~----~~~~~~~~~l~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 303 (581)
.++..++.. .....+.+.+...+...+.+ +++||||||+|+.. .+. . ..+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~l~----~---l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--VLK----A---FDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--HHH----T---TCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--HHH----H---hcCCCeEEEECCCcH
Confidence 334444421 12345667778888887765 78999999998632 222 2 257899999999998
Q ss_pred HHHhhCCCCeeeC---CCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhhccCCCHHHHHHH
Q 043779 304 VASIVGTLPVYRL---SDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLMHFKSNENEWLHV 380 (581)
Q Consensus 304 v~~~~~~~~~~~l---~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~ 380 (581)
++..+. ...+++ ++|+.+|+++||...++.... ...+.+.+|+++|+|+||||.++|+.++.++. .|...
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~----~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~--~w~~~ 341 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKA----DLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RWEYY 341 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGG----GSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT--CHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcc----cccHHHHHHHHHhCCCcHHHHHHHHHHhcCch--hHHHH
Confidence 876543 234444 589999999999998864221 22356899999999999999999999987653 46555
Q ss_pred HhccCcC----C----CCCCCChhHHHHHHHhcCChHhHHHHHHhcCCCCCCccchhHHHHHHHHcCCcccCCCCCHHHH
Q 043779 381 KDSELWN----L----PQEENSILPALRLSYANLPVELRQCFAFCAVFPKNAEIKKERLIHLWMANGFISSKGSLEAEAV 452 (581)
Q Consensus 381 ~~~~~~~----~----~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~ 452 (581)
+...... + ......+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+.
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~ 410 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEE 410 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHH
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHH
Confidence 4432111 1 11224688999999999999999999999999999999999999999532 356
Q ss_pred HHHHHHHHHHcCCceeecCCCCCccCCeEEeChhHHHHHHHhhc
Q 043779 453 GNEIFNELYWRSLIQDFAGDNGSTYNQIYKMHDLVHDLAQSIAG 496 (581)
Q Consensus 453 ~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~ 496 (581)
+..++++|+++|||+....+ .+ ..|+||++||++++....
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~-~~---~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNG-KS---FRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEET-TE---EEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHhCcCeEEecCC-Cc---cEEEEcHHHHHHHHhhhh
Confidence 78899999999999865432 11 249999999999998843
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.77 E-value=5.3e-17 Score=165.04 Aligned_cols=291 Identities=13% Similarity=0.167 Sum_probs=181.7
Q ss_pred cCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC------cHh
Q 043779 155 AQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF------NVR 228 (581)
Q Consensus 155 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~------~~~ 228 (581)
.++.|+||+.++++|.+++.. + +++.|+|++|+|||||++++++.. . .+|+++.... +..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITRE 75 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHH
T ss_pred ChHhcCChHHHHHHHHHHHhc------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHH
Confidence 456799999999999999864 1 588999999999999999999732 1 5677765432 455
Q ss_pred HHHHHHHHhhCC-----------------CC-CCcCCHHHHHHHHHHHhcC-cceEEEEecccccch-------hhHHHH
Q 043779 229 RLMTDIITSSGG-----------------NV-SEAWNLDLLQRRLKDMLDG-KRYLLVLDDVWNEDQ-------EKWDQL 282 (581)
Q Consensus 229 ~l~~~il~~l~~-----------------~~-~~~~~~~~l~~~l~~~l~~-k~~LlVlDdv~~~~~-------~~~~~l 282 (581)
.++..+...+.. .. ....+..++...+...... ++++|||||+++.+. ..+..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 556655554432 00 0123455666666665543 389999999977542 334444
Q ss_pred hhhcCCCCCCcEEEEecCchhHHHhh-----------CCC-CeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHH
Q 043779 283 KCTLTCGSKGSSVVVTTRLAKVASIV-----------GTL-PVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEI 350 (581)
Q Consensus 283 ~~~l~~~~~gs~iivTtr~~~v~~~~-----------~~~-~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I 350 (581)
...... .++.++|+|++.......+ +.. ..+++.+|+.+|+.+++...........+ .+.+..|
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i 231 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEA 231 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHH
Confidence 433322 2477899998865432211 111 27899999999999999875432221122 2567899
Q ss_pred HHHcCCCchHHHHhhhhhccCCCHHHHHH-HHhccCcCCCCCCCChhHHHHHHHhcC---ChHhHHHHHHhcCCCCCCcc
Q 043779 351 VKKCKGVPLAAKTLGSLMHFKSNENEWLH-VKDSELWNLPQEENSILPALRLSYANL---PVELRQCFAFCAVFPKNAEI 426 (581)
Q Consensus 351 ~~~~~G~PLai~~~~~~L~~~~~~~~w~~-~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~f~~~s~fp~~~~i 426 (581)
++.|+|+|+++..++..+....+...+.. ..+ .+...+.-.+..+ ++..+..+..+|+ + .+
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE-----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CC
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH-----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CC
Confidence 99999999999998876432222222211 111 1112222223333 7888999999988 2 13
Q ss_pred chhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHcCCceeecCCCCCccCCeEEe-ChhHHHHHH
Q 043779 427 KKERLIHLWMANGFISSKGSLEAEAVGNEIFNELYWRSLIQDFAGDNGSTYNQIYKM-HDLVHDLAQ 492 (581)
Q Consensus 427 ~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~m-Hdlv~~~~~ 492 (581)
+...+....-... ++. .......+++.|++.+||.... ..|.+ |++++++.+
T Consensus 297 ~~~~l~~~~~~~~-----~~~-~~~~~~~~l~~L~~~gli~~~~--------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 297 RWSLIRDYLAVKG-----TKI-PEPRLYALLENLKKMNWIVEED--------NTYKIADPVVATVLR 349 (350)
T ss_dssp SHHHHHHHHHHTT-----CCC-CHHHHHHHHHHHHHTTSEEEET--------TEEEESSHHHHHHHT
T ss_pred CHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHhCCCEEecC--------CEEEEecHHHHHHHc
Confidence 4445544432211 011 2456778999999999998652 22554 888888753
No 6
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.74 E-value=7.4e-19 Score=146.28 Aligned_cols=82 Identities=23% Similarity=0.468 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 043779 4 AILQVVLDNLNSLIKNELGLLHGVEKEMEKLSSTLSTIQAVLEDAEEK--QLKDKALQNWLRKLKDAAYEVDDLLDEYKT 81 (581)
Q Consensus 4 ~~v~~~~~kl~s~l~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~eD~ld~~~~ 81 (581)
|+|+++++||.+++.+|+.++.+|++++++|+++|++|++||.+|+.+ +..|+.++.|+++||++|||+|||||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999988 568999999999999999999999999999
Q ss_pred Hhhh
Q 043779 82 EASR 85 (581)
Q Consensus 82 ~~~~ 85 (581)
+...
T Consensus 81 ~~~~ 84 (115)
T 3qfl_A 81 QVDG 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 8753
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.73 E-value=2.4e-16 Score=160.63 Aligned_cols=287 Identities=12% Similarity=0.108 Sum_probs=173.2
Q ss_pred cCCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC-----CcHhH
Q 043779 155 AQPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED-----FNVRR 229 (581)
Q Consensus 155 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~ 229 (581)
.++.|+||+++++.|.+ +.. +++.|+|++|+|||||++++.+.. .. ..+|+++... .+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~--------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA--------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS--------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC--------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHH
Confidence 45679999999999999 642 589999999999999999999742 22 2578877642 23333
Q ss_pred HHHHHHHhhC-------------CCC-----C-----------CcCCHHHHHHHHHHHhcCcceEEEEecccccch----
Q 043779 230 LMTDIITSSG-------------GNV-----S-----------EAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ---- 276 (581)
Q Consensus 230 l~~~il~~l~-------------~~~-----~-----------~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~---- 276 (581)
++..+...+. ... + .......+...+.+... ++++|||||+++.+.
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 4333333221 000 0 12234555555554332 489999999977432
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCchhHHHhh-----------CC-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHH
Q 043779 277 EKWDQLKCTLTCGSKGSSVVVTTRLAKVASIV-----------GT-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNIL 344 (581)
Q Consensus 277 ~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-----------~~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~ 344 (581)
..+..+..... ...+.++|+|++.......+ +. ...+++.+|+.+|+.+++.............
T Consensus 156 ~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~--- 231 (357)
T 2fna_A 156 NLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD--- 231 (357)
T ss_dssp CCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---
T ss_pred hHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---
Confidence 22333333222 22467899999976532211 11 1378999999999999998754211111121
Q ss_pred HHHHHHHHHcCCCchHHHHhhhhhccCCCHHHHHHHHhccCcCCCCCCCChhHHHHHHHh-------cCChHhHHHHHHh
Q 043779 345 AIAKEIVKKCKGVPLAAKTLGSLMHFKSNENEWLHVKDSELWNLPQEENSILPALRLSYA-------NLPVELRQCFAFC 417 (581)
Q Consensus 345 ~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~-------~L~~~~k~~f~~~ 417 (581)
...|+..|+|+|+++..++..+....+...|..-.- +.+...+.-.+. .||+..+..+..+
T Consensus 232 --~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~l 299 (357)
T 2fna_A 232 --YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTL----------EYAKKLILKEFENFLHGREIARKRYLNIMRTL 299 (357)
T ss_dssp --HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHH----------HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred --HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHH----------HHHHHHHHHHHHHHhhccccccHHHHHHHHHH
Confidence 278999999999999998877644333333321110 011111211111 6888999999999
Q ss_pred cCCCCCCccchhHHHHHHH-HcCCcccCCCCCHHHHHHHHHHHHHHcCCceeecCCCCCccCCeEE-eChhHHHHH
Q 043779 418 AVFPKNAEIKKERLIHLWM-ANGFISSKGSLEAEAVGNEIFNELYWRSLIQDFAGDNGSTYNQIYK-MHDLVHDLA 491 (581)
Q Consensus 418 s~fp~~~~i~~~~Li~~w~-a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~-mHdlv~~~~ 491 (581)
|+ +. +...+....- ..|. .........+++.|++.+||.... + . |+ .|++++++.
T Consensus 300 a~---g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~---~-y~f~~~~~~~~l 356 (357)
T 2fna_A 300 SK---CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E---K-YCPSEPLISLAF 356 (357)
T ss_dssp TT---CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S---C-EEESSHHHHHHT
T ss_pred Hc---CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C---E-EEecCHHHHHhh
Confidence 98 21 3444433211 1121 012355778999999999997643 1 2 55 588998764
No 8
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.72 E-value=1e-16 Score=166.86 Aligned_cols=301 Identities=14% Similarity=0.063 Sum_probs=182.6
Q ss_pred CCccccchhhHHHHHHHH-hcCcCC-CCCeEEEEE--EecCCCcHHHHHHHHhcCcccc---CCcCc-eeEEEecCCCcH
Q 043779 156 QPEVYGREEDKEKIVERL-VKDVAG-SDDISIYPI--VGMGGLGKTTLAQLVFNDDRIK---RHFEF-RIWVFVFEDFNV 227 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L-~~~~~~-~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~F~~-~~wv~v~~~~~~ 227 (581)
++.++||+.+++++.+++ .....+ ......+.| +|++|+||||||+.+++..... ..|.. .+|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999998 532111 013356666 9999999999999999843211 01222 467777677788
Q ss_pred hHHHHHHHHhhCCCCCC-cCCHHHHHHHHHHHhc--CcceEEEEecccccc------hhhHHHHhhhcCCC---C--CCc
Q 043779 228 RRLMTDIITSSGGNVSE-AWNLDLLQRRLKDMLD--GKRYLLVLDDVWNED------QEKWDQLKCTLTCG---S--KGS 293 (581)
Q Consensus 228 ~~l~~~il~~l~~~~~~-~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 293 (581)
..++..++..++..... ..+...+...+...+. +++++|||||+|... ...+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999988654332 3345556666666654 679999999997642 23444443333211 2 345
Q ss_pred EEEEecCchhHHHhh--------CC-CCeeeCCCCChHhHHHHHHhhh---cCCCCCCCchHHHHHHHHHHHcC------
Q 043779 294 SVVVTTRLAKVASIV--------GT-LPVYRLSDLSEDDCWLLFKQRA---FGNDTEPPMNILAIAKEIVKKCK------ 355 (581)
Q Consensus 294 ~iivTtr~~~v~~~~--------~~-~~~~~l~~L~~~e~~~lf~~~a---~~~~~~~~~~l~~~~~~I~~~~~------ 355 (581)
.+|+||+...+...+ .. ...+.+.+|+.++++++|...+ +.... .+ .+....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~-~~---~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV-WE---PRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS-CC---HHHHHHHHHHHCGGGTSC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC-CC---hHHHHHHHHHHHHhccCC
Confidence 588888765533211 11 1238999999999999997654 22111 22 256788999999
Q ss_pred CCchHHHHhhhhhc-----cC---CCHHHHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHhHHHHHHhcCCC--CCCc
Q 043779 356 GVPLAAKTLGSLMH-----FK---SNENEWLHVKDSELWNLPQEENSILPALRLSYANLPVELRQCFAFCAVFP--KNAE 425 (581)
Q Consensus 356 G~PLai~~~~~~L~-----~~---~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp--~~~~ 425 (581)
|+|..+..+..... .. -+.+.+......... ...+.-++..||+..+.++..++.+. .+..
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 99976655443211 11 123333333322110 12233456789999999998888653 2334
Q ss_pred cchhHHHHHHHH-c-CCcccCCCCCHHHHHHHHHHHHHHcCCceeecC
Q 043779 426 IKKERLIHLWMA-N-GFISSKGSLEAEAVGNEIFNELYWRSLIQDFAG 471 (581)
Q Consensus 426 i~~~~Li~~w~a-~-g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~ 471 (581)
++...+...+.. . .... . ..........+++.|+..+||.....
T Consensus 328 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~L~~~gli~~~~~ 373 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYN-V-KPRGYTQYHIYLKHLTSLGLVDAKPS 373 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSC-C-CCCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred ccHHHHHHHHHHHHHhhcC-C-CCCCHHHHHHHHHHHHhCCCEEeecc
Confidence 555555444421 0 0110 0 11124556788999999999987643
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=2.9e-13 Score=139.49 Aligned_cols=296 Identities=14% Similarity=0.069 Sum_probs=187.9
Q ss_pred CCccccchhhHHHHHHHHhcCcCC-CCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc-CceeEEEecCCCcHhHHHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAG-SDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF-EFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~l~~~ 233 (581)
++.++||+.+++++..++.....+ .+..+.+.|+|++|+|||||++.+++. ..... ...+|++++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 367999999999999998753211 112347889999999999999999974 32221 23567777777778888899
Q ss_pred HHHhhCCCCCC-cCCHHHHHHHHHHHhc--CcceEEEEecccccchhhHHHHhhhcCCCC----CCcEEEEecCchhHHH
Q 043779 234 IITSSGGNVSE-AWNLDLLQRRLKDMLD--GKRYLLVLDDVWNEDQEKWDQLKCTLTCGS----KGSSVVVTTRLAKVAS 306 (581)
Q Consensus 234 il~~l~~~~~~-~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~ 306 (581)
++..++..... ......+...+...+. +++.+||||+++..+......+...+.... .+..+|++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 88888654332 2345556666655553 568899999998776666677766664322 4667888887664432
Q ss_pred hhC-------CCCeeeCCCCChHhHHHHHHhhhcC--CCCCCCchHHHHHHHHHHHc---------CCCchHHHHhhhhh
Q 043779 307 IVG-------TLPVYRLSDLSEDDCWLLFKQRAFG--NDTEPPMNILAIAKEIVKKC---------KGVPLAAKTLGSLM 368 (581)
Q Consensus 307 ~~~-------~~~~~~l~~L~~~e~~~lf~~~a~~--~~~~~~~~l~~~~~~I~~~~---------~G~PLai~~~~~~L 368 (581)
.+. ....+.+.+++.++..+++...+.. .....+ .+....|++.+ +|.|..+..+....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 221 1136999999999999999887532 111122 25678888998 78876554433322
Q ss_pred cc-----C---CCHHHHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHhHHHHHHhcCCC---CCCccchhHHHHHHHH
Q 043779 369 HF-----K---SNENEWLHVKDSELWNLPQEENSILPALRLSYANLPVELRQCFAFCAVFP---KNAEIKKERLIHLWMA 437 (581)
Q Consensus 369 ~~-----~---~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp---~~~~i~~~~Li~~w~a 437 (581)
.. . -+.+....+..... ...+.-.+..||.+.+.++..++.+. .+..+....+...+-.
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 11 1 12233333222211 01123446778988888887777654 2224555666554432
Q ss_pred ----cCCcccCCCCCHHHHHHHHHHHHHHcCCceeecC
Q 043779 438 ----NGFISSKGSLEAEAVGNEIFNELYWRSLIQDFAG 471 (581)
Q Consensus 438 ----~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~ 471 (581)
.|.. .-.......++++|...++|.....
T Consensus 321 ~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 321 VCEEYGER-----PRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEeee
Confidence 2211 1124567789999999999987654
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=1.7e-13 Score=141.08 Aligned_cols=296 Identities=15% Similarity=0.087 Sum_probs=180.9
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc----CCcCceeEEEecCCCcHhHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK----RHFEFRIWVFVFEDFNVRRLM 231 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~l~ 231 (581)
++.++||+.+++++..++.....+ ...+.+.|+|++|+||||||+.+++..... +.-...+|+++....+...++
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~-~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRG-EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSS-CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcC-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 477999999999999998653211 245678899999999999999999742111 001234678877778888899
Q ss_pred HHHHHhhCCCCCC-cCCHHHHHHHHHHHhc--CcceEEEEecccccchh--hHHHHhhhc---CCC--CCCcEEEEecCc
Q 043779 232 TDIITSSGGNVSE-AWNLDLLQRRLKDMLD--GKRYLLVLDDVWNEDQE--KWDQLKCTL---TCG--SKGSSVVVTTRL 301 (581)
Q Consensus 232 ~~il~~l~~~~~~-~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~~~l~~~l---~~~--~~gs~iivTtr~ 301 (581)
..++..++..... ..+...+...+...+. +++.+|||||++..... ..+.+...+ ... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 9999988654332 2345566666666663 56899999999754322 223333222 211 445677888775
Q ss_pred hhHH-----HhhCCC--CeeeCCCCChHhHHHHHHhhhcC--CCCCCCchHHHHHHHHHHHcC---CCchHH-HHhhhhh
Q 043779 302 AKVA-----SIVGTL--PVYRLSDLSEDDCWLLFKQRAFG--NDTEPPMNILAIAKEIVKKCK---GVPLAA-KTLGSLM 368 (581)
Q Consensus 302 ~~v~-----~~~~~~--~~~~l~~L~~~e~~~lf~~~a~~--~~~~~~~~l~~~~~~I~~~~~---G~PLai-~~~~~~L 368 (581)
.... ...... ..+.+.+++.++..+++...+.. .....++ ++...+++.++ |.|..+ .++..+.
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5221 111111 37899999999999999887531 1111222 44667778887 999433 3332222
Q ss_pred c-----cC--CCHHHHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHhHHHHHHhc-CCCCCCccchhHHHHHHHH---
Q 043779 369 H-----FK--SNENEWLHVKDSELWNLPQEENSILPALRLSYANLPVELRQCFAFCA-VFPKNAEIKKERLIHLWMA--- 437 (581)
Q Consensus 369 ~-----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s-~fp~~~~i~~~~Li~~w~a--- 437 (581)
. .. -+.+.+..++... ....+.-++..||++.+..+..++ ++.....+....+.+....
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 1 11 1344554444332 123455678899998888777665 4432234555544443321
Q ss_pred -cCCcccCCCCCHHHHHHHHHHHHHHcCCceeec
Q 043779 438 -NGFISSKGSLEAEAVGNEIFNELYWRSLIQDFA 470 (581)
Q Consensus 438 -~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 470 (581)
.| . .......+..+++.|...|++....
T Consensus 324 ~~~-~----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 324 TLG-L----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HTT-C----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hcC-C----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 23 1 1223567788999999999998754
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=2.7e-13 Score=139.48 Aligned_cols=295 Identities=14% Similarity=0.008 Sum_probs=180.3
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc----CC--cCceeEEEecCCC-cHh
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK----RH--FEFRIWVFVFEDF-NVR 228 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~--F~~~~wv~v~~~~-~~~ 228 (581)
+..++||+.+++++.+++.....+ ...+.+.|+|++|+||||||+.+++..... .. ....+|+++.... +..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~-~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN-EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT-CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 367999999999999888653221 245688899999999999999999842111 11 2235677777666 778
Q ss_pred HHHHHHHHhhCCCCC--CcCCHHHHHHHHHHHhcCcceEEEEecccccchhh-HHH-HhhhcCCCCCCcEEEEecCchhH
Q 043779 229 RLMTDIITSSGGNVS--EAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEK-WDQ-LKCTLTCGSKGSSVVVTTRLAKV 304 (581)
Q Consensus 229 ~l~~~il~~l~~~~~--~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~-~~~-l~~~l~~~~~gs~iivTtr~~~v 304 (581)
.++..++..+.+... .......+...+...+..++.+|||||++...... .+. +...+... .+..+|+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 888888887733221 22334566667777777666699999996543221 222 22222222 67789999886421
Q ss_pred ----HHhh--CCCCeeeCCCCChHhHHHHHHhhhcC--CCCCCCchHHHHHHHHHHHcC---CCch-HHHHhhhhh--cc
Q 043779 305 ----ASIV--GTLPVYRLSDLSEDDCWLLFKQRAFG--NDTEPPMNILAIAKEIVKKCK---GVPL-AAKTLGSLM--HF 370 (581)
Q Consensus 305 ----~~~~--~~~~~~~l~~L~~~e~~~lf~~~a~~--~~~~~~~~l~~~~~~I~~~~~---G~PL-ai~~~~~~L--~~ 370 (581)
...+ .....+.+.+++.++..+++...+.. .....++ +....|++.|+ |.|. ++.++-... ..
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1111 11238999999999999999987531 1111222 55677778887 9887 433333322 11
Q ss_pred ---CCCHHHHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHhHHHHHHhcCCCCCCccchhHHHHHHHHcCCcccCCCC
Q 043779 371 ---KSNENEWLHVKDSELWNLPQEENSILPALRLSYANLPVELRQCFAFCAVFPKNAEIKKERLIHLWMANGFISSKGSL 447 (581)
Q Consensus 371 ---~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~ 447 (581)
.-+.+.+..++... ....+..++..|++..+..+..++....+-.+. .......-..| .. .
T Consensus 254 ~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~----~ 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK----P 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----C
T ss_pred CCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----C
Confidence 12455555555432 124566778999998888877776611101111 11112211223 11 2
Q ss_pred CHHHHHHHHHHHHHHcCCceeecC
Q 043779 448 EAEAVGNEIFNELYWRSLIQDFAG 471 (581)
Q Consensus 448 ~~~~~~~~~l~~L~~~~ll~~~~~ 471 (581)
........+++.|...|++.....
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEEec
Confidence 235677889999999999987543
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.2e-12 Score=134.52 Aligned_cols=294 Identities=16% Similarity=0.140 Sum_probs=175.9
Q ss_pred CCccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc---CceeEEEecCCCcHhHHHH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF---EFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~l~~ 232 (581)
++.|+||+.+++.+.+++.....+ .....+.|+|++|+||||||+.+++. ....+ ...+|+++....+...++.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~-~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE-EKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT-CCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC-CCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 467999999999999988753111 24567889999999999999999983 22222 2356777766667778888
Q ss_pred HHHHhhCCCCC-CcCCHHHHHHHHHHHhc--CcceEEEEecccccc----hhhHHHHhhhcCC-CCCCcEEEEecCchhH
Q 043779 233 DIITSSGGNVS-EAWNLDLLQRRLKDMLD--GKRYLLVLDDVWNED----QEKWDQLKCTLTC-GSKGSSVVVTTRLAKV 304 (581)
Q Consensus 233 ~il~~l~~~~~-~~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~v 304 (581)
.++..++.... ...+..++...+...+. +++.+||||+++... ...+..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 88877754332 22335555555665554 458999999996532 2334444443322 2345567777775533
Q ss_pred HHhhC-----C--CCeeeCCCCChHhHHHHHHhhhcCC--CCCCCchHHHHHHHHHHHcC---CCchHHHH-hhhhhc--
Q 043779 305 ASIVG-----T--LPVYRLSDLSEDDCWLLFKQRAFGN--DTEPPMNILAIAKEIVKKCK---GVPLAAKT-LGSLMH-- 369 (581)
Q Consensus 305 ~~~~~-----~--~~~~~l~~L~~~e~~~lf~~~a~~~--~~~~~~~l~~~~~~I~~~~~---G~PLai~~-~~~~L~-- 369 (581)
...+. . ...+.+.+++.++..+++...+... .....+ ++...+++.++ |.|..+.. +.....
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPD---NVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22111 1 1379999999999999998764311 111222 55667777777 99985443 322211
Q ss_pred ---c--CCCHHHHHHHHhccCcCCCCCCCChhHHHHHHHhcCChHhHHHHHHhcCCCC-C-CccchhHHHHHH----HHc
Q 043779 370 ---F--KSNENEWLHVKDSELWNLPQEENSILPALRLSYANLPVELRQCFAFCAVFPK-N-AEIKKERLIHLW----MAN 438 (581)
Q Consensus 370 ---~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~-~-~~i~~~~Li~~w----~a~ 438 (581)
. .-+.+.+..+.... ....+.-.+..||+..+..+..++.+.+ + ..+....+.+.. -..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 11334444433321 1235666788899888887776664221 2 223343332222 112
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHcCCceeec
Q 043779 439 GFISSKGSLEAEAVGNEIFNELYWRSLIQDFA 470 (581)
Q Consensus 439 g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 470 (581)
| +. .........+++.|...|++....
T Consensus 323 g-~~----~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 323 G-VE----AVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp T-CC----CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred C-CC----CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 2 11 112456778999999999998754
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.46 E-value=3.3e-12 Score=122.16 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=122.2
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++||+.+++.+..++.... ....+.|+|++|+||||||+.+++.......+... .+..... ...+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~ 91 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---PCGVCDN----CREIEQ 91 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS---CCSCSHH----HHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCcccHH----HHHHhc
Confidence 468999999999999997542 23478899999999999999998743211111000 0000000 001100
Q ss_pred hhCC-----CCCCcCCHHHHHHHHHHH----hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh-HHH
Q 043779 237 SSGG-----NVSEAWNLDLLQRRLKDM----LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK-VAS 306 (581)
Q Consensus 237 ~l~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~ 306 (581)
.... ........+.+...+... ..+++.+||+||++..+...++.+...+.....+..+|+||+... +..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 0000 000011122222222221 134679999999987777778888877776666788888887543 211
Q ss_pred -hhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhh
Q 043779 307 -IVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSL 367 (581)
Q Consensus 307 -~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~ 367 (581)
.......+++.+++.++..+++...+.......++ +....|++.|+|+|..+..+...
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP---RALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCH---HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHH
Confidence 22334579999999999999999877533222222 56789999999999998876544
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.35 E-value=2e-11 Score=114.92 Aligned_cols=177 Identities=14% Similarity=0.129 Sum_probs=116.9
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEec--CCCcHhHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVF--EDFNVRRLMTDI 234 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~--~~~~~~~l~~~i 234 (581)
.+++|++..++.+.+++... ..+.+.|+|++|+|||+||+.+++. .........++.+. ...+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~---- 85 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-----NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVV---- 85 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-----CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHH----
T ss_pred HHHcCcHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHH----
Confidence 46899999999999999753 2233789999999999999999873 21222122233332 22222211
Q ss_pred HHhhCCCCCCcCCHHHHHHHHHHHh------cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhH--HH
Q 043779 235 ITSSGGNVSEAWNLDLLQRRLKDML------DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKV--AS 306 (581)
Q Consensus 235 l~~l~~~~~~~~~~~~l~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v--~~ 306 (581)
...+.... .+++.+||+||++.......+.+...+.....+..+|+||+.... ..
T Consensus 86 -----------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 148 (226)
T 2chg_A 86 -----------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (226)
T ss_dssp -----------------HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -----------------HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHH
Confidence 11222211 257889999999877666677777777655667788888875431 11
Q ss_pred hhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 307 IVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 307 ~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
.......+.+.+++.++..+++.+.+.......+ .+....|++.++|.|..+..+
T Consensus 149 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2233348899999999999999887643222122 256778899999999965543
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=1.2e-10 Score=116.60 Aligned_cols=181 Identities=18% Similarity=0.227 Sum_probs=116.5
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCc-eeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF-RIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~l~~~il 235 (581)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+.. .++++.+....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~--------- 85 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG-----NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRG--------- 85 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC-----CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCS---------
T ss_pred HHHHCCHHHHHHHHHHHHcC-----CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccC---------
Confidence 46899999999999998753 223378999999999999999987321 111111 22222222111
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHh-------cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh-H-HH
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDML-------DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK-V-AS 306 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l-------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v-~~ 306 (581)
.+.+...+.... .+++.++|+||++......++.+...+.....++.+|+||+... + ..
T Consensus 86 ------------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 86 ------------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp ------------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred ------------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhH
Confidence 122222222221 34688999999987766667777777665556778888886543 2 12
Q ss_pred hhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchH-HHHhhhh
Q 043779 307 IVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLA-AKTLGSL 367 (581)
Q Consensus 307 ~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLa-i~~~~~~ 367 (581)
.......+++.+++.++..+++...+.......++ +.+..|++.|+|.|.. +..+...
T Consensus 154 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 154 LQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTN---DGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22334489999999999999998866422211122 5678899999999954 4444433
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.21 E-value=5e-11 Score=119.46 Aligned_cols=182 Identities=18% Similarity=0.093 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|++..++.+..++............+.|+|++|+|||+||+.+++. .... ..+++.+.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~--------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKP--------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSH---------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCCh---------
Confidence 56899999999988887642111113346779999999999999999873 2221 223332222111
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC------------------CCcEEEEe
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS------------------KGSSVVVT 298 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iivT 298 (581)
.++...+...+ .++.+|+||++........+.+...+.... ++..+|.|
T Consensus 78 ------------~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 78 ------------GDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp ------------HHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred ------------HHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 11111111111 356799999997766555555554443211 23567766
Q ss_pred cCchh-HHHhh-CC-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhhhh
Q 043779 299 TRLAK-VASIV-GT-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGSLM 368 (581)
Q Consensus 299 tr~~~-v~~~~-~~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~~L 368 (581)
|.... +...+ .. ...+.+.+++.++...++...+.......++ +....|++.++|.|..+..+...+
T Consensus 145 t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 145 TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITE---EAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp ESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCH---HHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHccCCHHHHHHHHHHH
Confidence 66332 11111 11 2478999999999999998877543322222 667889999999998887655443
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=1.5e-09 Score=108.74 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEec--CCCcHhHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVF--EDFNVRRLMTDI 234 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~--~~~~~~~l~~~i 234 (581)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++. .........++.+. .......+ ...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINVI-REK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-----CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHTT-HHH
T ss_pred HHhhCCHHHHHHHHHHHHcC-----CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHHH-HHH
Confidence 46899999999999998763 3334889999999999999999873 21111111223322 11111110 000
Q ss_pred HHhhCCCCCCcCCHHHHHHHHHH--HhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhH-HH-hhCC
Q 043779 235 ITSSGGNVSEAWNLDLLQRRLKD--MLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKV-AS-IVGT 310 (581)
Q Consensus 235 l~~l~~~~~~~~~~~~l~~~l~~--~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~-~~~~ 310 (581)
+...... ...+++.++|+||++......++.+...+.....++++|+||....- .. ....
T Consensus 97 ----------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 97 ----------------VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp ----------------HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred ----------------HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 0000000 11256789999999877767777787777665667888888875431 11 1122
Q ss_pred CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhhh
Q 043779 311 LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLGS 366 (581)
Q Consensus 311 ~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~~ 366 (581)
...+.+.+++.++...++...+.......+ .+....|++.++|.|..+..+..
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 237899999999999999887654332222 25678899999999997654433
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.99 E-value=7.9e-09 Score=105.49 Aligned_cols=195 Identities=14% Similarity=0.118 Sum_probs=117.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|++..++.+..++.... ....+.|+|++|+||||+|+.+.+.......+.. ..+... .....+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~ 84 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQ 84 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHT
T ss_pred hhccCcHHHHHHHHHHHHhCC----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhc
Confidence 458999999999999997532 2346789999999999999999874221111100 000000 00111111
Q ss_pred hh-------CCC-CCCcCCHHHHHHHHHHH-hcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh-H-H
Q 043779 237 SS-------GGN-VSEAWNLDLLQRRLKDM-LDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK-V-A 305 (581)
Q Consensus 237 ~l-------~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v-~ 305 (581)
.. ... .........+...+... ..+++.++|+||++..+....+.+...+.....+..+|++|.... + .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 00 000 01112222222222111 135678999999987777777778777766556677777776432 2 1
Q ss_pred HhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhh
Q 043779 306 SIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLG 365 (581)
Q Consensus 306 ~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~ 365 (581)
........+++.+++.++...++.+.+...+...+ .+....|++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 22233458999999999999999876532221112 2567889999999999876543
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.92 E-value=1.3e-08 Score=101.48 Aligned_cols=181 Identities=13% Similarity=0.109 Sum_probs=114.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCc-eeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF-RIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~l~~~il 235 (581)
.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++... ...+.. .+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-----NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-----CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC-----CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH-------
Confidence 46899999999999888653 223378999999999999999987321 111111 1223322211110
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHH--h-cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh-H-HHhhCC
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDM--L-DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK-V-ASIVGT 310 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v-~~~~~~ 310 (581)
............ + .+++.++|+|+++.......+.+...+.....++.+|+||.... + ......
T Consensus 84 -----------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 84 -----------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp -----------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred -----------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 011111111110 1 25678999999987766667777777776666778888876543 2 112233
Q ss_pred CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 311 LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 311 ~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
...+++.+++.++...++...+.......++ +....|++.++|.|..+...
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~---~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVKITE---DGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCCCBCH---HHHHHHHHTTTTCHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 3489999999999999998876543322222 56788899999999866543
No 20
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.2e-08 Score=100.28 Aligned_cols=173 Identities=11% Similarity=0.058 Sum_probs=107.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC---Cc-C-ceeEEEecCCCcHhHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR---HF-E-FRIWVFVFEDFNVRRLM 231 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F-~-~~~wv~v~~~~~~~~l~ 231 (581)
..+.||++|.++|...|.....+ +..+.+.|+|++|+|||++++.+++...... .. . ..+++++....+...++
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~-~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMS-SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 34789999999999888764322 3566788999999999999999998543211 11 1 24567777777888999
Q ss_pred HHHHHhhCCCCCC-cCCHHHHHHHHHHH--hcCcceEEEEecccccchhhHHHHhhhcC---CCCCCcEEEEecCchhH-
Q 043779 232 TDIITSSGGNVSE-AWNLDLLQRRLKDM--LDGKRYLLVLDDVWNEDQEKWDQLKCTLT---CGSKGSSVVVTTRLAKV- 304 (581)
Q Consensus 232 ~~il~~l~~~~~~-~~~~~~l~~~l~~~--l~~k~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~iivTtr~~~v- 304 (581)
..|..++.+.... ....+.+...+... -.+++++++||+++... .-+.+...+. .......||.++...+.
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999664322 22334444444432 24578999999996543 1123333322 11112234444443221
Q ss_pred --------HHhhCCCCeeeCCCCChHhHHHHHHhhhc
Q 043779 305 --------ASIVGTLPVYRLSDLSEDDCWLLFKQRAF 333 (581)
Q Consensus 305 --------~~~~~~~~~~~l~~L~~~e~~~lf~~~a~ 333 (581)
...++ ...+.+.|++.+|..+++.+++.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11222 23689999999999999988763
No 21
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.83 E-value=8.1e-08 Score=96.58 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=109.6
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
.+++|++..++.+..++............+.|+|++|+|||+||+.+.+ .....| +.++.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~----------- 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIE----------- 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCC-----------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhcc-----------
Confidence 5689999999999998875321112345678999999999999999987 332222 122221111
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC------------------CCcEEEEe
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS------------------KGSSVVVT 298 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iivT 298 (581)
........+.. ..+..+|+||++..........+...+.... ++..+|.+
T Consensus 93 ----------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 160 (338)
T 3pfi_A 93 ----------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA 160 (338)
T ss_dssp ----------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred ----------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence 11122222222 2456799999998776666666665554321 12456666
Q ss_pred cCchhH-HH-hhCCC-CeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhh
Q 043779 299 TRLAKV-AS-IVGTL-PVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLG 365 (581)
Q Consensus 299 tr~~~v-~~-~~~~~-~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~ 365 (581)
|..... .. ..... ..+.+.+++.++...++...+.......+ .+....|++.+.|.|-.+..+.
T Consensus 161 tn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 161 TTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHH
Confidence 664321 11 11222 47999999999999999887643322112 2567888899999996655433
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.74 E-value=1.6e-08 Score=96.21 Aligned_cols=174 Identities=13% Similarity=0.073 Sum_probs=99.4
Q ss_pred Cccccch---hhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHH
Q 043779 157 PEVYGRE---EDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 157 ~~~vGR~---~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 233 (581)
.+|+|.. ..++.+..++... ..+.+.|+|++|+||||||+.+++.. ........|+..+.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD-----GVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC-----SCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGGS------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHH------
Confidence 3567633 4555555555432 34577899999999999999998742 222233456655332110
Q ss_pred HHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhh--HHHHhhhcCCC-CCC-cEEEEecCch-------
Q 043779 234 IITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEK--WDQLKCTLTCG-SKG-SSVVVTTRLA------- 302 (581)
Q Consensus 234 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtr~~------- 302 (581)
+ .. .+. .+ .++.+||+||++...... .+.+...+... ..+ .++|+||+..
T Consensus 95 ----~----~~---------~~~-~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 ----S----TA---------LLE-GL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ----C----GG---------GGT-TG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ----H----HH---------HHH-hc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 0 00 000 01 356799999997653322 33343333211 112 2477777632
Q ss_pred --hHHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhh
Q 043779 303 --KVASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLG 365 (581)
Q Consensus 303 --~v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~ 365 (581)
.+...+.....+.+.+++.++..+++...+.......+ .+....|++.++|.+-.+..+.
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 12222222257899999999999999887643222222 2567889999999987765443
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=6.1e-08 Score=98.04 Aligned_cols=193 Identities=11% Similarity=0.071 Sum_probs=112.9
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCc-eeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF-RIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~l~~~il 235 (581)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+.+.......+.. ...++.+.......+ .+.+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 110 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA-----NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKV 110 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT-----TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHH
T ss_pred HHhhCCHHHHHHHHHHHhcC-----CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHH
Confidence 46899999999999998653 2223789999999999999999874211111211 222333222222211 1111
Q ss_pred HhhC-CCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh-HHHh-hCCCC
Q 043779 236 TSSG-GNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK-VASI-VGTLP 312 (581)
Q Consensus 236 ~~l~-~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~ 312 (581)
..+. ......... .....-.+++-+|++|++........+.+...+.......++|++|.... +... .....
T Consensus 111 ~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 111 KNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 1110 000000000 00111123557999999977666666667766665555667777765332 1111 11123
Q ss_pred eeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 313 VYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 313 ~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
.+.+.+++.++...++...+.......++ +....|++.++|.|..+..
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~---~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCDD---GVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCH---HHHHHHHHHTSSCHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 78999999999999998876433322222 6688999999999987543
No 24
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.69 E-value=3.6e-08 Score=90.01 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=82.6
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC---C--cCceeEEEecCCCcHhHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR---H--FEFRIWVFVFEDFNVRRLM 231 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~--F~~~~wv~v~~~~~~~~l~ 231 (581)
..++||+++++++.+++... ....+.|+|++|+|||+||+.+++...... . ....+++.+. .+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~- 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG------AL- 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH------HH-
T ss_pred cccccchHHHHHHHHHHhcC-----CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH------HH-
Confidence 46899999999999998752 334678999999999999999987421100 0 1112232221 11
Q ss_pred HHHHHhhCCCCCCcCCHHHHHHHHHHHh-cCcceEEEEecccccc--------hhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 232 TDIITSSGGNVSEAWNLDLLQRRLKDML-DGKRYLLVLDDVWNED--------QEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 232 ~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
. ............+...+.... .+++.+|||||++... ....+.+...+.. .+..+|+||...
T Consensus 90 ---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~ 161 (195)
T 1jbk_A 90 ---V---AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLD 161 (195)
T ss_dssp ---H---TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHH
T ss_pred ---h---ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHH
Confidence 0 000000000111112222121 3567899999996542 1113334333322 344677777655
Q ss_pred hHHH-------hhCCCCeeeCCCCChHhHHHHH
Q 043779 303 KVAS-------IVGTLPVYRLSDLSEDDCWLLF 328 (581)
Q Consensus 303 ~v~~-------~~~~~~~~~l~~L~~~e~~~lf 328 (581)
.... .......+.+.+++.++..+++
T Consensus 162 ~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 162 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 4321 1222236888899888876654
No 25
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.68 E-value=4.2e-07 Score=92.49 Aligned_cols=196 Identities=16% Similarity=0.137 Sum_probs=109.0
Q ss_pred CccccchhhHHHH---HHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEec------CCCcH
Q 043779 157 PEVYGREEDKEKI---VERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVF------EDFNV 227 (581)
Q Consensus 157 ~~~vGR~~~~~~l---~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~------~~~~~ 227 (581)
++++|++..++.+ .+.+.... ...+.+.|+|++|+|||++|+.+.+.. .... .|+.+. .....
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~---~~~~~vLl~GppGtGKT~la~~la~~l--~~~~---~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK---IAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDT---PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC---CTTCEEEEEESTTSSHHHHHHHHHHHH--CSSC---CEEEEEGGGGSCSSSCH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC---CCCCEEEEECCCCCCHHHHHHHHHHHh--cccC---Ccccccchhhhhcccch
Confidence 4699999887764 44444321 123578899999999999999999843 2211 122221 12223
Q ss_pred hHHHHHHHHhhCC---------------------CC-------CC--cCCHHHHHHHHHHHh-----cCc----ceEEEE
Q 043779 228 RRLMTDIITSSGG---------------------NV-------SE--AWNLDLLQRRLKDML-----DGK----RYLLVL 268 (581)
Q Consensus 228 ~~l~~~il~~l~~---------------------~~-------~~--~~~~~~l~~~l~~~l-----~~k----~~LlVl 268 (581)
...+...+....+ .. .. ......+...+.... .++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3333333222110 00 00 000122222222211 133 459999
Q ss_pred ecccccchhhHHHHhhhcCCCCCCcEEEEecCc-------------hhH-HHhhCCCCeeeCCCCChHhHHHHHHhhhcC
Q 043779 269 DDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL-------------AKV-ASIVGTLPVYRLSDLSEDDCWLLFKQRAFG 334 (581)
Q Consensus 269 Ddv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-------------~~v-~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~ 334 (581)
|++........+.+...+....... ++++|.. ..+ .........+.+.+++.++..+++...+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 9998877777777777776544443 4434321 111 112223346899999999999999977654
Q ss_pred CCCCCCchHHHHHHHHHHHcC-CCchHHHHh
Q 043779 335 NDTEPPMNILAIAKEIVKKCK-GVPLAAKTL 364 (581)
Q Consensus 335 ~~~~~~~~l~~~~~~I~~~~~-G~PLai~~~ 364 (581)
.....++ +....|++.+. |.|..+..+
T Consensus 275 ~~~~~~~---~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 275 EDVEMSE---DAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TTCCBCH---HHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCCCCH---HHHHHHHHHhcCCCHHHHHHH
Confidence 3222222 56788888887 877766543
No 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=1.5e-07 Score=95.15 Aligned_cols=196 Identities=11% Similarity=0.077 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHH-hcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcc--ccCC--cCce---------------
Q 043779 157 PEVYGREEDKEKIVERL-VKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDR--IKRH--FEFR--------------- 216 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L-~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~--F~~~--------------- 216 (581)
.+++|.+..++.+..++ ... .... +.|+|++|+||||+++.+..... ..+. ++..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 45889998888888877 332 1223 88999999999999998876210 0000 0000
Q ss_pred ---eEEEecCC-CcHh--HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC
Q 043779 217 ---IWVFVFED-FNVR--RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS 290 (581)
Q Consensus 217 ---~wv~v~~~-~~~~--~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 290 (581)
.++.+... .... ....+++..+.....- .... .+.. +.+++-++|||++...+....+.+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 01111100 0000 0111222221110000 0000 0000 12356799999998777666677777666444
Q ss_pred CCcEEEEecCch-hHH-HhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCC-chHHHHHHHHHHHcCCCchHHHHhhh
Q 043779 291 KGSSVVVTTRLA-KVA-SIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPP-MNILAIAKEIVKKCKGVPLAAKTLGS 366 (581)
Q Consensus 291 ~gs~iivTtr~~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~-~~l~~~~~~I~~~~~G~PLai~~~~~ 366 (581)
.+..+|++|... .+. ........+++.+++.++...++...+...+...+ + +.+..|++.++|.+..+..+..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETK---DILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCS---HHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcH---HHHHHHHHHcCCCHHHHHHHHH
Confidence 567777777643 222 22233458999999999999999877643222111 2 5678899999999887654433
No 27
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.62 E-value=1.3e-07 Score=98.43 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=95.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCc--eeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEF--RIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 260 (581)
...+.|+|++|+||||||+.+++. ....+.. .++++. ..+...+...+... ... .+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----CHH----HHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----cHH----HHHHHhc
Confidence 557889999999999999999983 3323322 234332 22333344333221 111 2233333
Q ss_pred CcceEEEEecccccch--hhHHHHhhhcCC-CCCCcEEEEecCch---------hHHHhhCCCCeeeCCCCChHhHHHHH
Q 043779 261 GKRYLLVLDDVWNEDQ--EKWDQLKCTLTC-GSKGSSVVVTTRLA---------KVASIVGTLPVYRLSDLSEDDCWLLF 328 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf 328 (581)
.+.-+|+|||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3677999999965432 222334333321 23466888888752 23333433357899999999999999
Q ss_pred HhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 329 KQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 329 ~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
.+.+.......++ ++...|++.+.|.+--+.-
T Consensus 273 ~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 273 RKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 8876422221222 4577888999998876643
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.58 E-value=7e-07 Score=92.73 Aligned_cols=176 Identities=17% Similarity=0.191 Sum_probs=102.5
Q ss_pred CccccchhhH---HHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC-cHhHHHH
Q 043779 157 PEVYGREEDK---EKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF-NVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~---~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~ 232 (581)
.+++|.+..+ ..+...+... ....+.|+|++|+||||||+.+.+ ..... ++.++... .... +.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~-----~~~~vLL~GppGtGKTtlAr~ia~--~~~~~-----f~~l~a~~~~~~~-ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG-----HLHSMILWGPPGTGKTTLAEVIAR--YANAD-----VERISAVTSGVKE-IR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT-----CCCEEEEECSTTSSHHHHHHHHHH--HTTCE-----EEEEETTTCCHHH-HH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC-----CCcEEEEECCCCCcHHHHHHHHHH--HhCCC-----eEEEEeccCCHHH-HH
Confidence 4688988887 6777777653 446788999999999999999997 33222 23332211 1111 11
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEE-ecCchh--H-HHhh
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVV-TTRLAK--V-ASIV 308 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--v-~~~~ 308 (581)
.++.. .......+++.+|+||+++.......+.+...+..+ ...+|. ||.+.. + ....
T Consensus 93 ~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 93 EAIER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHh
Confidence 11110 011112457889999999876655555566655542 233443 554432 1 2223
Q ss_pred CCCCeeeCCCCChHhHHHHHHhhhcCCCC----CCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 309 GTLPVYRLSDLSEDDCWLLFKQRAFGNDT----EPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 309 ~~~~~~~l~~L~~~e~~~lf~~~a~~~~~----~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
....++.+.+++.++...++.+.+..... ....--.+....|++.++|.+-.+.-
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 34458899999999999999887643110 00011135678888889998876653
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.56 E-value=1.1e-06 Score=85.96 Aligned_cols=184 Identities=18% Similarity=0.166 Sum_probs=102.5
Q ss_pred CCccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNV 227 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 227 (581)
-.+++|.+..+++|.+.+..... +......+.|+|++|+|||+||+.+++. ....| +.+..+.-
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~--- 87 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSEL--- 87 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGG---
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHH---
Confidence 35689999999999887753200 0123456789999999999999999873 22221 12221111
Q ss_pred hHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc-----------chh---hHHHHhhhcC--CCCC
Q 043779 228 RRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE-----------DQE---KWDQLKCTLT--CGSK 291 (581)
Q Consensus 228 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~--~~~~ 291 (581)
..... ......+...+.......+.+|+|||+... +.. .+..+...+. ....
T Consensus 88 -----------~~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 88 -----------VKKFI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp -----------CCCST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred -----------HHhcc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 01100 001122222233333456789999999542 111 1222222222 2234
Q ss_pred CcEEEEecCchhHHH--hhC--C-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC-chHHHH
Q 043779 292 GSSVVVTTRLAKVAS--IVG--T-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV-PLAAKT 363 (581)
Q Consensus 292 gs~iivTtr~~~v~~--~~~--~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~-PLai~~ 363 (581)
+..||.||....... ... . ...+.+.+.+.++..+++...+.........+ ...++..+.|. |-.|..
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 667888887543211 111 1 23789999999999999988875433222222 46677777774 544443
No 30
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.56 E-value=2.6e-06 Score=85.21 Aligned_cols=184 Identities=13% Similarity=0.013 Sum_probs=107.7
Q ss_pred hhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHh-----
Q 043779 163 EEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITS----- 237 (581)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~----- 237 (581)
++..+.+...+... .-...+.++|++|+|||++|+.+.+...-...-. +..+.... ....+...
T Consensus 8 ~~~~~~l~~~i~~~----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~~~c~~c~----~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 8 RPDFEKLVASYQAG----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---HKSCGHCR----GCQLMQAGTHPDY 76 (334)
T ss_dssp HHHHHHHHHHHHTT----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---TBCCSCSH----HHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHcC----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---CCCCCCCH----HHHHHhcCCCCCE
Confidence 44566677766543 2345688999999999999999987321111000 00000000 00001000
Q ss_pred --hCCCC-CCcCCHHHHHHHHHHHh----cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh-HH-Hhh
Q 043779 238 --SGGNV-SEAWNLDLLQRRLKDML----DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK-VA-SIV 308 (581)
Q Consensus 238 --l~~~~-~~~~~~~~l~~~l~~~l----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~~~ 308 (581)
+.... ......+++...+.... .+++-++|+|+++.......+.+...+.....++.+|++|...+ +. ...
T Consensus 77 ~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 00000 11122333333222211 24678999999988777777888888876666777777766543 22 223
Q ss_pred CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHhh
Q 043779 309 GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTLG 365 (581)
Q Consensus 309 ~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~~ 365 (581)
.....+++.+++.++..+++.+.. . .+ .+.+..+++.++|.|..+..+.
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~---~--~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV---T--MS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC---C--CC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc---C--CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 444589999999999999998875 1 11 1456789999999998775543
No 31
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=5.4e-07 Score=95.86 Aligned_cols=197 Identities=14% Similarity=0.121 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCc------------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC
Q 043779 157 PEVYGREEDKEKIVERLVKDV------------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED 224 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~------------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 224 (581)
.+++|++..++++.+|+.... .+.+..+.+.|+|++|+||||+|+.+++.. .+. .+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~~-~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GYD-ILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TCE-EEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEeCCCc
Confidence 568999999999999997521 001134688899999999999999999832 121 223333333
Q ss_pred CcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccch---hhHHHHhhhcCCCCCCcEEEEecCc
Q 043779 225 FNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ---EKWDQLKCTLTCGSKGSSVVVTTRL 301 (581)
Q Consensus 225 ~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTtr~ 301 (581)
... .++...+........-..-...... .....+++.+|++|++..... ..+..+...+... +..||+++..
T Consensus 114 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCH-HHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chH-HHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 222 2222222222111000000000000 001235678999999965432 2234444444322 2335555443
Q ss_pred hh---HHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc-hHHHHhhh
Q 043779 302 AK---VASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP-LAAKTLGS 366 (581)
Q Consensus 302 ~~---v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P-Lai~~~~~ 366 (581)
.. +.........+.+.+++.++..+++...+.......++ +....|++.++|.+ .++..+..
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 22222223478999999999999888766432221222 45778899999954 45555433
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.51 E-value=1.2e-06 Score=86.61 Aligned_cols=160 Identities=17% Similarity=0.106 Sum_probs=93.3
Q ss_pred ccccchhhHHHHHHHHhcCc----------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcH
Q 043779 158 EVYGREEDKEKIVERLVKDV----------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNV 227 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 227 (581)
.++|.+..++.+.+++.... ........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 57899888888877654210 00123456789999999999999988774322222222234444311
Q ss_pred hHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc---------chhhHHHHhhhcCCCCCCcEEEEe
Q 043779 228 RRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE---------DQEKWDQLKCTLTCGSKGSSVVVT 298 (581)
Q Consensus 228 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivT 298 (581)
.+..... ......+...+... +.-+|+||+++.. .......+...+.....+..+|.|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1111111 11112222222222 3469999999733 445556676666666667788888
Q ss_pred cCchhHHHhh--C------CCCeeeCCCCChHhHHHHHHhhhc
Q 043779 299 TRLAKVASIV--G------TLPVYRLSDLSEDDCWLLFKQRAF 333 (581)
Q Consensus 299 tr~~~v~~~~--~------~~~~~~l~~L~~~e~~~lf~~~a~ 333 (581)
|......... . ....+.+.+++.++...++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8754321110 1 114789999999999999987764
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.47 E-value=6.9e-07 Score=89.16 Aligned_cols=171 Identities=18% Similarity=0.174 Sum_probs=104.7
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
++++|.+..++.+.+++... ....++.+.|++|+|||++|+.+++. ... ..+.++.+. ..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~----~~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~---------- 85 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG----KIPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CK---------- 85 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT----CCCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CC----------
T ss_pred HHHhCcHHHHHHHHHHHHcC----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cC----------
Confidence 56899999999999999853 23457788899999999999999873 211 122333222 11
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHh-----cCcceEEEEecccccc-hhhHHHHhhhcCCCCCCcEEEEecCchh-----HH
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDML-----DGKRYLLVLDDVWNED-QEKWDQLKCTLTCGSKGSSVVVTTRLAK-----VA 305 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~-----v~ 305 (581)
.+.+...+.... .+++.++++||++... ....+.+...+.....+..+|+||.... +.
T Consensus 86 -----------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 86 -----------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp -----------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred -----------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence 112222222211 2367899999998766 5566666666654445678888887543 22
Q ss_pred HhhCCCCeeeCCCCChHhHHHH-------HHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 306 SIVGTLPVYRLSDLSEDDCWLL-------FKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 306 ~~~~~~~~~~l~~L~~~e~~~l-------f~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
..+ ..+++.+++.++-.++ +...+.......++ .+....|++.++|.+..+..
T Consensus 155 sR~---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 155 SRC---RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp HHS---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred hhC---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 222 3789999998874333 22222211111111 25677888999888775443
No 34
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=2e-06 Score=86.37 Aligned_cols=177 Identities=14% Similarity=0.183 Sum_probs=107.3
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
..++|.+..++.|..++... ..+.+.++|++|+||||+|+.+++... ...+.. ..+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-----~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~-~~~~~~~~------------ 85 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-----KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSN-MVLELNAS------------ 85 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-----CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHH-HEEEECTT------------
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccc-eEEEEcCc------------
Confidence 35789888888888888753 233378999999999999999987321 111111 11111111
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHh------cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh-HH-Hhh
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDML------DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK-VA-SIV 308 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~~~ 308 (581)
.....+.+.+.+.... .+.+-++|+|+++.......+.+...+......+.+|++|.... +. ...
T Consensus 86 -------~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 86 -------DDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp -------SCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -------ccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 0011222222222221 23467899999977666666777766665555667777765432 21 112
Q ss_pred CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHH
Q 043779 309 GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAK 362 (581)
Q Consensus 309 ~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~ 362 (581)
.....+.+.+++.++..+.+...+.......+ .+....|++.++|.+--+.
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 33347899999999999888876632222122 2567889999999887543
No 35
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.42 E-value=4.9e-06 Score=80.02 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=99.5
Q ss_pred CccccchhhHHHHHHHHhc---CcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVK---DVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~---~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++.+.+++.. ... +....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh---
Confidence 4688998888777665432 110 1123456779999999999999999983 2222 12233322111
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc---------------hhhHHHHhhhcCC--CCCC
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED---------------QEKWDQLKCTLTC--GSKG 292 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~---------------~~~~~~l~~~l~~--~~~g 292 (581)
. ........+...+.......+.+|+||+++... ......+...+.. ...+
T Consensus 78 -----------~-~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 -----------V-IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -----------S-STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -----------h-ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0 000111222233333334567899999996431 1112233333322 2245
Q ss_pred cEEEEecCchhHH-Hh-hC--C-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCch-HHHHh
Q 043779 293 SSVVVTTRLAKVA-SI-VG--T-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPL-AAKTL 364 (581)
Q Consensus 293 s~iivTtr~~~v~-~~-~~--~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PL-ai~~~ 364 (581)
..||.||...... .. .. . ...+.+...+.++-.+++...+........ .......+++.+.|.+- .|..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCHHHHHHH
Confidence 5677777654321 11 11 1 236789999999999999887643322222 12235788888888754 44433
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.40 E-value=7.8e-06 Score=79.22 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=94.1
Q ss_pred CccccchhhHHHHHH-------HHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVE-------RLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~-------~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
+.++|.....+++.. .+.... ......+.|+|++|+|||+||+.+++. ....| +.+..+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~--~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~------ 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD--RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPD------ 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS--SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC--CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHH------
Confidence 457788777666665 332111 135677889999999999999999983 22111 1222221
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc----------chhhHHHHhhhcCC---CCCCcEEE
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE----------DQEKWDQLKCTLTC---GSKGSSVV 296 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~ii 296 (581)
.+.+. ........+...+......+..+|+|||+... .......+...+.. ......||
T Consensus 100 -------~~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 100 -------KMIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp -------GCTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred -------HhcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 01110 00001122233333333466889999998542 12223334443332 22344577
Q ss_pred EecCchhHHHhh---CC-CCeeeCCCCCh-HhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC
Q 043779 297 VTTRLAKVASIV---GT-LPVYRLSDLSE-DDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV 357 (581)
Q Consensus 297 vTtr~~~v~~~~---~~-~~~~~l~~L~~-~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~ 357 (581)
.||......... +. ...+.+.+++. ++...++.... . .+ .+....|++.+.|.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC---HHHHHHHHHHHTTS
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC---HHHHHHHHHHhcCC
Confidence 778766544431 22 23688999988 67777766532 1 11 24577888888884
No 37
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.40 E-value=3.5e-06 Score=83.99 Aligned_cols=170 Identities=14% Similarity=0.086 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCc
Q 043779 166 KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEA 245 (581)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~ 245 (581)
...+..++.... .....+.|+|++|+||||||+.+++..... .+ ..++++. ..+...+...+...
T Consensus 23 ~~~~~~~~~~~~---~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~---- 87 (324)
T 1l8q_A 23 YEVVKEALENLG---SLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG---- 87 (324)
T ss_dssp HHHHHHHHHTTT---TSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT----
T ss_pred HHHHHHHHhCcC---CCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC----
Confidence 344555554321 134567899999999999999999842211 11 2334433 22333333322110
Q ss_pred CCHHHHHHHHHHHhcCcceEEEEecccccch--hhHHHHhhhcCC-CCCCcEEEEecCch---------hHHHhhCCCCe
Q 043779 246 WNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ--EKWDQLKCTLTC-GSKGSSVVVTTRLA---------KVASIVGTLPV 313 (581)
Q Consensus 246 ~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~ 313 (581)
..... ...+. +..+|+|||+..... ...+.+...+.. ...+..||+||... .+...+.....
T Consensus 88 -~~~~~----~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 88 -TINEF----RNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp -CHHHH----HHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred -cHHHH----HHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 11111 22222 367999999965432 222333333321 12355788877532 22333333347
Q ss_pred eeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHH
Q 043779 314 YRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAA 361 (581)
Q Consensus 314 ~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai 361 (581)
+++.+ +.++...++...+.......++ ++...|++.+ |.+-.+
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~l~~---~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLELRK---EVIDYLLENT-KNVREI 204 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCCCCH---HHHHHHHHHC-SSHHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHhC-CCHHHH
Confidence 89999 9999999998877533222222 5677888888 776544
No 38
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.38 E-value=9.8e-06 Score=80.61 Aligned_cols=184 Identities=15% Similarity=0.060 Sum_probs=103.7
Q ss_pred CccccchhhHHHHHHHHhcC-------cCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKD-------VAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++.|.+++... .......+-+.|+|++|+|||+||+.+++. .... ++.++ ...
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~-----~~~v~----~~~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST-----FFSVS----SSD 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE-----EEEEE----HHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC-----EEEEc----hHH
Confidence 56899999999998877311 111123456789999999999999999983 3222 22221 111
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccch-----------hhHHHHhhhcC---CCCCCcEE
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ-----------EKWDQLKCTLT---CGSKGSSV 295 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs~i 295 (581)
+ ..... ......+.......-..++.+|+||++..... .....+...+. ....+..|
T Consensus 87 l----~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 87 L----VSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp H----HTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred H----hhccc-----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 1 11100 00111222222222335678999999964321 11233333332 23345667
Q ss_pred EEecCchhH-----HHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC-chHHHHhh
Q 043779 296 VVTTRLAKV-----ASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV-PLAAKTLG 365 (581)
Q Consensus 296 ivTtr~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~-PLai~~~~ 365 (581)
|.||..... ... ....+.+...+.++-.+++...+......... .....|++.+.|. +-.|..+.
T Consensus 158 i~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~---~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPCVLTK---EDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH---HHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH---HHHHHHHHHcCCCCHHHHHHHH
Confidence 767764322 222 12367888899999999999887543322121 4567888888874 54555443
No 39
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.37 E-value=9e-06 Score=81.97 Aligned_cols=184 Identities=15% Similarity=0.083 Sum_probs=101.6
Q ss_pred CccccchhhHHHHHHHHhcC----c---CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKD----V---AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~----~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++.|.+.+... . .+....+-|.|+|++|+|||+||+.+++. .... ++.++ ...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~-----~~~v~----~~~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST-----FFSVS----SSD 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE-----EEEEE----HHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC-----EEEee----HHH
Confidence 46899999999998876321 0 01122345779999999999999999983 2222 22221 111
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchh-----------hHHHHhhhcC---CCCCCcEE
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQE-----------KWDQLKCTLT---CGSKGSSV 295 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~i 295 (581)
+ .....+ .....+...+...-..++.+|+||++...... ....+...+. ....+..|
T Consensus 120 l----~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 L----VSKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred H----hhhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 1 111111 11222222222223357889999999643211 1223333332 22345566
Q ss_pred EEecCchh-----HHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC-chHHHHhh
Q 043779 296 VVTTRLAK-----VASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV-PLAAKTLG 365 (581)
Q Consensus 296 ivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~-PLai~~~~ 365 (581)
|.||.... +.. .....+.+...+.++-.+++...+........ ......|++.+.|. |-.|..+.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66776442 222 22346788999999999999887754322111 24467888999884 54455443
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.35 E-value=3.8e-05 Score=76.21 Aligned_cols=186 Identities=13% Similarity=0.060 Sum_probs=102.9
Q ss_pred CccccchhhHHHHHHHHhcC----c---CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKD----V---AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~----~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++.|.+.+... . ......+.+.|+|++|+|||+||+.+++. .. ..-++.++...
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~----~~~~~~i~~~~---- 81 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSD---- 81 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TT----SCEEEEEECCS----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cC----CCcEEEEEhHH----
Confidence 46889999888888776421 0 11123467889999999999999999973 21 11233332210
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc-------h----hhHHHHhhhcCC---CCCCcEE
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED-------Q----EKWDQLKCTLTC---GSKGSSV 295 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-------~----~~~~~l~~~l~~---~~~gs~i 295 (581)
+.... .......+.......-..++.+|+||++.... . .....+...+.. ...+..|
T Consensus 82 --------l~~~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 82 --------LVSKW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp --------SCCSS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred --------HHhhh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 00000 01122222222222334578899999995431 0 111223222221 2345566
Q ss_pred EEecCchh-----HHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC-chHHHHhhh
Q 043779 296 VVTTRLAK-----VASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV-PLAAKTLGS 366 (581)
Q Consensus 296 ivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~-PLai~~~~~ 366 (581)
|.||.... +.. .....+.+...+.++-.+++............ ......|++.+.|. +-.|..+..
T Consensus 153 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666432 222 22246788889999999999887643322111 24567889999987 444554443
No 41
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.32 E-value=4.4e-05 Score=76.22 Aligned_cols=177 Identities=21% Similarity=0.192 Sum_probs=97.8
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
..++|.+..++.+...+......+.....+.|+|++|+||||||+.+++. ....|. ..+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~-----~~sg~~~---------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH-----VTSGPVL---------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE-----EEETTTC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE-----EEechHh----------
Confidence 45788887777777666532111123457889999999999999999983 222211 1111100
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC------------------CCcEE-EE
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS------------------KGSSV-VV 297 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~i-iv 297 (581)
.....+...+. .+ .++.++++|++........+.+...+.... +...+ -.
T Consensus 88 ---------~~~~~l~~~~~-~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 88 ---------VKQGDMAAILT-SL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp ---------CSHHHHHHHHH-HC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred ---------cCHHHHHHHHH-Hc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 01111111111 12 234577889886554434444433322111 01122 23
Q ss_pred ecCchhHHHhh-CC-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchHHHHh
Q 043779 298 TTRLAKVASIV-GT-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLAAKTL 364 (581)
Q Consensus 298 Ttr~~~v~~~~-~~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~~ 364 (581)
|++...+...+ .. ...+.+++.+.++..+++.+.+.......+ .+.+..|++++.|.|-.+.-+
T Consensus 157 t~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~---~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE---DAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHTSTTCHHHHHHH
T ss_pred cCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHhcCCChHHHHHH
Confidence 45543332222 11 125789999999999999887642222112 266889999999999765443
No 42
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.32 E-value=9.7e-07 Score=76.78 Aligned_cols=114 Identities=19% Similarity=0.082 Sum_probs=69.7
Q ss_pred ccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHh
Q 043779 158 EVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITS 237 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~ 237 (581)
.++|+...+.++.+.+..... .. .-|.|+|++|+|||++|+.+++.... ..... + ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~--~~-~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~-v-~~~~~~~~~---------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE--TD-IAVWLYGAPGTGRMTGARYLHQFGRN-AQGEF-V-YRELTPDNA---------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT--CC-SCEEEESSTTSSHHHHHHHHHHSSTT-TTSCC-E-EEECCTTTS----------
T ss_pred CceeCCHHHHHHHHHHHHHhC--CC-CCEEEECCCCCCHHHHHHHHHHhCCc-cCCCE-E-EECCCCCcc----------
Confidence 578999999999988865332 12 34569999999999999999874211 11222 2 555432221
Q ss_pred hCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCc
Q 043779 238 SGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRL 301 (581)
Q Consensus 238 l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 301 (581)
.... ..+... ..-.|+||++..........+...+.......++|.||..
T Consensus 66 --------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 --------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp --------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred --------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0111 111111 2357899999877766666677666555556678888773
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.31 E-value=9.2e-06 Score=82.03 Aligned_cols=186 Identities=11% Similarity=-0.018 Sum_probs=102.6
Q ss_pred CccccchhhHHHHHHHHhcCc---C----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKDV---A----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~---~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++.|.+++.... . .....+.+.|+|++|+|||+||+.+++. .... .+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 468999999999988775310 0 0123456889999999999999999873 2221 12333321111
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHH-HHHHHhcCcceEEEEecccccc-----------hhhHHHHhhhcCC----CCCCc
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQR-RLKDMLDGKRYLLVLDDVWNED-----------QEKWDQLKCTLTC----GSKGS 293 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~-~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~gs 293 (581)
... ........ .+...-..++.+|+||++.... ......+...+.. ...+.
T Consensus 156 -----------~~~--g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KWV--GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SST--THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------ccc--chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 000 01111112 2222223567899999994321 1122333333331 12345
Q ss_pred EEEEecCchh-HHHh-hCC-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCC-CchHHHHhhh
Q 043779 294 SVVVTTRLAK-VASI-VGT-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKG-VPLAAKTLGS 366 (581)
Q Consensus 294 ~iivTtr~~~-v~~~-~~~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G-~PLai~~~~~ 366 (581)
.||.||.... +... ... ...+.+...+.++..+++...+........ ......|++.+.| .|-.|..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666666432 2111 122 236788889999999988877643222112 2557788999998 4556665544
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.29 E-value=1e-06 Score=79.80 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++||+.+++.+.+++... ....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-----~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR-----TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC-----CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998652 3345679999999999999999874
No 45
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.23 E-value=3.6e-05 Score=75.46 Aligned_cols=183 Identities=14% Similarity=0.070 Sum_probs=99.4
Q ss_pred CccccchhhHHHHHHHHhcCcC-------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKDVA-------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++.+.+++..... .......+.|+|++|+|||++|+.+++. ....| +.++.+.-.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~~~~l~---- 91 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSATF---LNISAASLT---- 91 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEESTTTS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEeeHHHHh----
Confidence 4689999999999887743110 0012457789999999999999999873 22211 222222111
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHH-HHHHHhcCcceEEEEecccccc-----------hhhHHHHhhhc---CCC--CCC
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQR-RLKDMLDGKRYLLVLDDVWNED-----------QEKWDQLKCTL---TCG--SKG 292 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~-~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l---~~~--~~g 292 (581)
... ......... .+......++.+|+||++.... ......+...+ +.. +.+
T Consensus 92 ----------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 92 ----------SKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp ----------SSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred ----------hcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 000 011222222 2222233567899999995421 11111222222 211 234
Q ss_pred cEEEEecCchh-----HHHhhCCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCch-HHHHhh
Q 043779 293 SSVVVTTRLAK-----VASIVGTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPL-AAKTLG 365 (581)
Q Consensus 293 s~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PL-ai~~~~ 365 (581)
..||.||.... +...+ ...+.+...+.++...++...+........ ......|++.+.|.+- ++..+.
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56777776532 22222 236777888888888888776543221111 2456788899999876 554443
No 46
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=1.4e-05 Score=78.47 Aligned_cols=149 Identities=11% Similarity=-0.005 Sum_probs=93.1
Q ss_pred cchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcc-ccCCcCceeEEEecC-CCcHhHHHHHHHHhh
Q 043779 161 GREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDR-IKRHFEFRIWVFVFE-DFNVRRLMTDIITSS 238 (581)
Q Consensus 161 GR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~-~~~~~~l~~~il~~l 238 (581)
|-++.++.+...+... ......++|++|+||||+|..+.+... .........++..+. ...+.. .+++...+
T Consensus 1 g~~~~~~~L~~~i~~~-----~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTC-----SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC-----CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHH
Confidence 3455666777777643 256888999999999999999986311 111122223333221 122111 12233322
Q ss_pred CCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch-hHHHhhCCCCeeeCC
Q 043779 239 GGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA-KVASIVGTLPVYRLS 317 (581)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~l~ 317 (581)
...+ ..+++-++|+|+++.......+.+...+....+.+.+|++|.+. .+...+... .+++.
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 2111 02456799999998888788888888888766777777766543 444444444 89999
Q ss_pred CCChHhHHHHHHhhh
Q 043779 318 DLSEDDCWLLFKQRA 332 (581)
Q Consensus 318 ~L~~~e~~~lf~~~a 332 (581)
+++.++...++.+.+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.17 E-value=6.5e-05 Score=78.07 Aligned_cols=187 Identities=16% Similarity=0.104 Sum_probs=102.1
Q ss_pred CccccchhhHHHHHHHHhcC----c---CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKD----V---AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~----~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++.|.+.+... . ......+.+.|+|++|+|||+||+.+++. . ....++.++.. .
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~----~ 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSS----D 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHH----H
Confidence 56899999999998877321 0 00123467889999999999999999983 2 11223344322 1
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc-----------hhhHHHHhhhcCC---CCCCcEE
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED-----------QEKWDQLKCTLTC---GSKGSSV 295 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~---~~~gs~i 295 (581)
+... ..+.. ......+. ...-..++.+|+||++.... ......+...+.. ...+..|
T Consensus 204 l~~~----~~g~~--~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LVSK----WLGES--EKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp ------------C--CCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HHhh----hcchH--HHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 1111 11111 11222222 22223567899999996431 1112333333332 2345677
Q ss_pred EEecCchhHH-H-hhCCC-CeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC-chHHHHhh
Q 043779 296 VVTTRLAKVA-S-IVGTL-PVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV-PLAAKTLG 365 (581)
Q Consensus 296 ivTtr~~~v~-~-~~~~~-~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~-PLai~~~~ 365 (581)
|.||...... . ..... ..+.+...+.++...+|...+.......+ ......|++.+.|. +-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 7777654321 1 11222 36788888888888999887643322111 14467888899885 44554443
No 48
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.16 E-value=3.7e-06 Score=75.99 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=62.5
Q ss_pred chhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCC
Q 043779 162 REEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN 241 (581)
Q Consensus 162 R~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~ 241 (581)
....++.+.+++..-.. .....+.|+|++|+|||||++.+++.......+. +++++ ..++...+.......
T Consensus 19 ~~~~~~~~~~~~~~~~~--~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP--EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHHSCCG--GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc--cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCc
Confidence 34455555555543221 1235788999999999999999988432122222 23333 334444443333211
Q ss_pred CCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhH--HHHhhhcCC-CCCCcEEEEecC
Q 043779 242 VSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKW--DQLKCTLTC-GSKGSSVVVTTR 300 (581)
Q Consensus 242 ~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr 300 (581)
... ..... +. +.-+|||||++......| ..+...+.. ...|..+|+||.
T Consensus 90 ~~~-----~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 90 KDT-----KFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp CCS-----HHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hHH-----HHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 111 11111 21 456999999974222223 233333321 124668888887
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.15 E-value=5.2e-05 Score=77.51 Aligned_cols=186 Identities=13% Similarity=0.104 Sum_probs=99.9
Q ss_pred CccccchhhHHHHHHHHhcCcC-------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKDVA-------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++.|.+++..... .....+.+.|+|++|+|||+||+.+++. ....| +.++.+.-.+ .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~--~ 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTS--K 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhc--c
Confidence 5689999999999988732110 0012356789999999999999999873 22211 1222211110 0
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc-----------chhhHHHHhhhcC---C-CCCCcE
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE-----------DQEKWDQLKCTLT---C-GSKGSS 294 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~---~-~~~gs~ 294 (581)
. . ......+...+...-...+.+|+||+++.. .......+...+. . ......
T Consensus 188 --------~----~-g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 --------Y----V-GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred --------c----c-chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 0 001112222222222345689999999543 1111122222222 1 123445
Q ss_pred EEEecCchh-HHH-hhCCC-CeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCch-HHHHhh
Q 043779 295 VVVTTRLAK-VAS-IVGTL-PVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPL-AAKTLG 365 (581)
Q Consensus 295 iivTtr~~~-v~~-~~~~~-~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PL-ai~~~~ 365 (581)
||.||.... +.. ..... ..+.+...+.++..+++...+........ .+....|++.+.|..- +|..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666666432 211 11222 36889999999999999887654322222 2456789999988654 555443
No 50
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.13 E-value=3.3e-05 Score=75.97 Aligned_cols=180 Identities=15% Similarity=0.138 Sum_probs=100.4
Q ss_pred CccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.+++|.+..+++|.+++.... .+-...+.+.|+|++|+|||+||+.+++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 468999998888888775310 01123456889999999999999999983 2222 23332 22
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccch--------------hhHHHHhhhcCC--CCCC
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ--------------EKWDQLKCTLTC--GSKG 292 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 292 (581)
.+..... +.. ...+...+.......+.+|+||++..... .....+...+.. ...+
T Consensus 84 ~l~~~~~----g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMWF----GES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHHH----TTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhhc----Cch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 2322221 111 11222233333345679999999953211 112334433321 2345
Q ss_pred cEEEEecCchhHH-Hh-hC--C-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCchH
Q 043779 293 SSVVVTTRLAKVA-SI-VG--T-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVPLA 360 (581)
Q Consensus 293 s~iivTtr~~~v~-~~-~~--~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~PLa 360 (581)
..||.||...... .. .. . ...+.+...+.++-.+++.............+ ...++..+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 6777777755322 11 12 1 23688999999998888877764332222222 34556677777654
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.13 E-value=2.2e-05 Score=82.01 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=63.8
Q ss_pred eEEEEecccccchhhHHHHhhhcCCCCCCcEEEEe---------cC----chhH-HHhhCCCCeeeCCCCChHhHHHHHH
Q 043779 264 YLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVT---------TR----LAKV-ASIVGTLPVYRLSDLSEDDCWLLFK 329 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT---------tr----~~~v-~~~~~~~~~~~l~~L~~~e~~~lf~ 329 (581)
-++++|+++..+....+.+...+.......-|+.| |. ...+ ....+....+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 38999999888888888888888755444333344 32 1111 1122333467999999999999998
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHHc-CCCchHHHHhh
Q 043779 330 QRAFGNDTEPPMNILAIAKEIVKKC-KGVPLAAKTLG 365 (581)
Q Consensus 330 ~~a~~~~~~~~~~l~~~~~~I~~~~-~G~PLai~~~~ 365 (581)
..+.......++ +....|++.+ .|.|..+..+.
T Consensus 377 ~~~~~~~~~~~~---~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 377 IRAQTEGINISE---EALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHTCCBCH---HHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHhCCCCCH---HHHHHHHHHccCCCHHHHHHHH
Confidence 775321111122 5567788888 88887665443
No 52
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.11 E-value=3.6e-05 Score=80.58 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=80.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCc-----CceeEEEecCCCcHhHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF-----EFRIWVFVFEDFNVRRLM 231 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-----~~~~wv~v~~~~~~~~l~ 231 (581)
+.++||+.+++.+...|.... ..-+.|+|++|+|||++|+.+++. +...+ ...-++.+.-.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~-----~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT-----KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-----SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC----------
T ss_pred CCccCcHHHHHHHHHHHhccC-----CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC-------
Confidence 458999999999999997632 234569999999999999999873 21111 11112221111
Q ss_pred HHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHHh----
Q 043779 232 TDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASI---- 307 (581)
Q Consensus 232 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~---- 307 (581)
....+.. ... +...+...-..++.+|++|. .....+.+...+.. ...++|.+|........
T Consensus 246 ----~~~~g~~--e~~---~~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 ----TKYRGEF--EDR---LKKVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp -------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred ----ccccchH--HHH---HHHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcC
Confidence 0000100 011 22222333335678999991 12223334444432 24566666664442211
Q ss_pred ---hCCCCeeeCCCCChHhHHHHHHhhhc
Q 043779 308 ---VGTLPVYRLSDLSEDDCWLLFKQRAF 333 (581)
Q Consensus 308 ---~~~~~~~~l~~L~~~e~~~lf~~~a~ 333 (581)
......+.+.+.+.++...++...+.
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 11223689999999999999987653
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.09 E-value=2.4e-05 Score=77.23 Aligned_cols=137 Identities=18% Similarity=0.250 Sum_probs=74.5
Q ss_pred ccccchhhHHHHHHHHhcCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHH
Q 043779 158 EVYGREEDKEKIVERLVKDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 233 (581)
.++|.+..++.+...+..... .......+.++|++|+|||++|+.+++. ....-...+.+.++..... .....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~-~~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEK-HAVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCST-THHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccc-ccHHH
Confidence 477999998888887765321 1112357889999999999999999873 2211112334444332221 11222
Q ss_pred HHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecCc
Q 043779 234 IITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTRL 301 (581)
Q Consensus 234 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 301 (581)
++....+. ........+...+.. ...-+++||++..........+...+.... ..+.+|.||..
T Consensus 95 l~g~~~~~-~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 95 LIGAPPGY-VGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHCCCTTS-TTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred hcCCCCcc-ccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 22111000 000011122222221 334699999998777666676666654221 23447777775
No 54
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.05 E-value=4.2e-06 Score=72.47 Aligned_cols=110 Identities=12% Similarity=0.105 Sum_probs=63.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
-+++|+...++++.+.+..... ...-|.|+|++|+|||++|+.+.+... -++.+.-.. +....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~---~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~----~~~~~-- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK---RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVE----YLIDM-- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT---CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTT----HHHHC--
T ss_pred cCceeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhh----CChHh--
Confidence 3578999999998888764322 122366999999999999999887321 222222111 10000
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCC-CCCcEEEEecC
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCG-SKGSSVVVTTR 300 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr 300 (581)
...+... .+.-.|+||++..........+...+... ..+.++|.||.
T Consensus 67 ---------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 67 ---------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp ---------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred ---------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 1111111 12357899999877665555666555432 34567888876
No 55
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.05 E-value=3e-05 Score=81.31 Aligned_cols=184 Identities=12% Similarity=0.095 Sum_probs=102.8
Q ss_pred CccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.+++|.+..+++|.+++.... .+.....-+.|+|++|+|||++|+.+.+ .....| +.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEch------
Confidence 458999999999988775420 0012344678999999999999999987 332222 222211
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc-----------chhhHHHHhhhcC--CCCCCcEE
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE-----------DQEKWDQLKCTLT--CGSKGSSV 295 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~--~~~~gs~i 295 (581)
.+...+. ......+...+.....+++.+|+||++... .......+...+. ....+..|
T Consensus 273 ----~l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1111111 111222333344444567889999999321 1122233444443 22334566
Q ss_pred EEecCchhH-HHhh----CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC-chHHHHh
Q 043779 296 VVTTRLAKV-ASIV----GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV-PLAAKTL 364 (581)
Q Consensus 296 ivTtr~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~-PLai~~~ 364 (581)
|.||..... ...+ .....+.+...+.++-.+++..++.......... ...+++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 667764422 2121 1123688999999999999988765433222222 35667777775 4444443
No 56
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=5.5e-05 Score=76.22 Aligned_cols=178 Identities=16% Similarity=0.105 Sum_probs=98.8
Q ss_pred CccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
+++.|-++.+++|.+.+.-+- .+-..++-+.++|+||+|||.||+++++ .....| +.+..+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~--- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELV--- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhh---
Confidence 457888888888877654310 0223456677999999999999999998 333332 122221111
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc--------h------hhHHHHhhhcC--CCCCC
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED--------Q------EKWDQLKCTLT--CGSKG 292 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~--------~------~~~~~l~~~l~--~~~~g 292 (581)
.... ......+.......-...+++|++|++.... . .....+...+. ....+
T Consensus 220 -----------sk~v-Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 220 -----------QKYI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -----------CSST-THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -----------cccc-chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 1100 1111222222222224578999999995321 0 11223333333 23345
Q ss_pred cEEEEecCchhHHH--hh---CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 293 SSVVVTTRLAKVAS--IV---GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 293 s~iivTtr~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
..||.||...+... .. .-...+.+...+.++-.++|+.+.........-+ ...|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 56777887544321 11 2235788998899998899987764433222223 456777887754
No 57
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.01 E-value=3.5e-05 Score=74.27 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=67.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
..++|....+.++.+.+..... ....+.|+|++|+|||++|+.+++... ..-...+.++++.- ....+...+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~---~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~-~~~~~~~~l~g 79 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP---LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL-NENLLDSELFG 79 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT---SCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS-CHHHHHHHHHC
T ss_pred ccceeCCHHHHHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC-ChhHHHHHhcC
Confidence 3578999999988877764322 223566999999999999999987421 11111233444432 11111111111
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCC-----------CCCcEEEEecCc
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCG-----------SKGSSVVVTTRL 301 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 301 (581)
...+...... ......+.. ...-+|+||++..........+...+..+ ....+||.||..
T Consensus 80 ~~~~~~~g~~--~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 80 HEAGAFTGAQ--KRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp CC-----------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred Cccccccccc--ccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 1000000000 000001111 13458999999876655555565554421 135678888874
No 58
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.01 E-value=2.4e-05 Score=77.00 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=84.2
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
+.++|+...+.++.+.+..... ....|.|+|++|+|||++|+.+.+... .... ..+.++++.-. ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~---~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~-~~v~v~~~~~~--~~l~~~--- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP---SDATVLIHGDSGTGKELVARALHACSA-RSDR-PLVTLNCAALN--ESLLES--- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS---TTSCEEEESCTTSCHHHHHHHHHHHSS-CSSS-CCCEEECSSCC--HHHHHH---
T ss_pred CCcEECCHHHHHHHHHHHHHhC---CCCcEEEECCCCchHHHHHHHHHHhCc-ccCC-CeEEEeCCCCC--hHHHHH---
Confidence 4588999999999888866432 223466999999999999999987321 1111 12344444332 222222
Q ss_pred hhCCCCCCcCCHH--HHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCC-----------CCCcEEEEecCchh
Q 043779 237 SSGGNVSEAWNLD--LLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCG-----------SKGSSVVVTTRLAK 303 (581)
Q Consensus 237 ~l~~~~~~~~~~~--~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~~ 303 (581)
.+.+......... .....+... ..-+|+||++..........+...+... ....+||.||...-
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l 148 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL 148 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCH
T ss_pred HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccH
Confidence 2222111100000 000011111 2347899999877665556666555432 13467888877431
Q ss_pred ------------HHHhhCCCCeeeCCCCC--hHhHHHHHH
Q 043779 304 ------------VASIVGTLPVYRLSDLS--EDDCWLLFK 329 (581)
Q Consensus 304 ------------v~~~~~~~~~~~l~~L~--~~e~~~lf~ 329 (581)
+...+. ...+.+.+|. .++...|+.
T Consensus 149 ~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 149 AEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHH
Confidence 111111 2246788888 455554443
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.98 E-value=2.7e-05 Score=87.90 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=80.9
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc---cCCcCceeEEEecCCCcHhHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI---KRHFEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~F~~~~wv~v~~~~~~~~l~~~ 233 (581)
+.++||+.++..+.+.|.... ...+.++|++|+||||+|+.+++.... .......-.+.+... .+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~-----~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----~l~~- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG----SLLA- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS-----CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred cccCCcHHHHHHHHHHHhcCC-----CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH----Hhhc-
Confidence 458999999999999997532 234579999999999999999874211 011111112222110 0000
Q ss_pred HHHhhCCCCCCcCCHHHHHHHHHHHhc-CcceEEEEecccccc--------hhhHHHHhhhcCCCCCCcEEEEecCchhH
Q 043779 234 IITSSGGNVSEAWNLDLLQRRLKDMLD-GKRYLLVLDDVWNED--------QEKWDQLKCTLTCGSKGSSVVVTTRLAKV 304 (581)
Q Consensus 234 il~~l~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~~v 304 (581)
+..........+...+...-. +++.+|++|+++... ....+.+...+.. .+..+|.+|.....
T Consensus 240 ------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 ------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHH
T ss_pred ------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHH
Confidence 000001111222223333222 367899999996532 1112224433332 23456666654433
Q ss_pred HHh------hCCCCeeeCCCCChHhHHHHHHhh
Q 043779 305 ASI------VGTLPVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 305 ~~~------~~~~~~~~l~~L~~~e~~~lf~~~ 331 (581)
... ......+.+.+++.++..+++...
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 111 122236899999999999988744
No 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.96 E-value=0.0002 Score=68.47 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=93.2
Q ss_pred CccccchhhHHHHHHHHh---cCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLV---KDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~---~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++++.+.+. .... +....+-+.|+|++|+||||||+.+++. ....| +.++.. +..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~-----~~i~~~-~~~- 82 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS-DFV- 82 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE-----EEECSC-SST-
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE-----EEEeHH-HHH-
Confidence 468899887777765432 2110 0112345779999999999999999873 22222 223211 100
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccch--------------hhHHHHhhhcC--CCCCCc
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ--------------EKWDQLKCTLT--CGSKGS 293 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~gs 293 (581)
... .......+...+.......+.++++|++..... .....+...+. ....+.
T Consensus 83 ------~~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 83 ------EMF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp ------TSC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred ------HHh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 000 011222333334444445678999999832110 11222332222 123445
Q ss_pred EEEEecCchh-HHHhh-C---CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCC-CchHHH
Q 043779 294 SVVVTTRLAK-VASIV-G---TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKG-VPLAAK 362 (581)
Q Consensus 294 ~iivTtr~~~-v~~~~-~---~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G-~PLai~ 362 (581)
.||.||...+ +...+ . ....+.+...+.++-.+++.............. ...++..+.| .+--|.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 6777776543 21111 1 123677888888888888776653322111111 3456667777 555444
No 61
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.96 E-value=5e-06 Score=76.62 Aligned_cols=117 Identities=19% Similarity=0.199 Sum_probs=59.0
Q ss_pred hHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCC
Q 043779 165 DKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSE 244 (581)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~ 244 (581)
.++.+.+++...... .....+.|+|++|+|||+||+.+++. ........+|+++. .+...+.......
T Consensus 37 ~~~~~~~~~~~~~~~-~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~--- 104 (202)
T 2w58_A 37 AIRFAERFVAEYEPG-KKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQ--- 104 (202)
T ss_dssp HHHHHHHHHHHCCSS-CCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---C---
T ss_pred HHHHHHHHHHHhhhc-cCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccc---
Confidence 445556666543221 11257889999999999999999984 33333344555442 3444443332111
Q ss_pred cCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHH--Hhh-hcCCC-CCCcEEEEecC
Q 043779 245 AWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQ--LKC-TLTCG-SKGSSVVVTTR 300 (581)
Q Consensus 245 ~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr 300 (581)
........+. +.-+|||||++......|.. +.. .+... ..+..+|+||.
T Consensus 105 --~~~~~~~~~~-----~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn 157 (202)
T 2w58_A 105 --TMNEKLDYIK-----KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSN 157 (202)
T ss_dssp --CCHHHHHHHH-----HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEES
T ss_pred --hHHHHHHHhc-----CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 1222222222 22499999996533222211 111 11111 23457888887
No 62
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.94 E-value=6.4e-05 Score=74.02 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=83.4
Q ss_pred CccccchhhHHHHHHHHhcCcC---------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-
Q 043779 157 PEVYGREEDKEKIVERLVKDVA---------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN- 226 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~---------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~- 226 (581)
+.++|.+..++.+...+..... .......+.|+|++|+|||++|+.+.+. .... .+.++.+...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~~---~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANAP---FIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEcchhcccC
Confidence 4589999999999887754100 0012345779999999999999999873 2221 22333332211
Q ss_pred ------HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhh------------HHHHhhhcCC
Q 043779 227 ------VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEK------------WDQLKCTLTC 288 (581)
Q Consensus 227 ------~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~------------~~~l~~~l~~ 288 (581)
....+..+.....+ .+.. .+.+.+|+||++....... .+.+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11122222211100 0000 1246799999996543222 3444444432
Q ss_pred C----------CCCcEEEEecC----ch-----hHHHhhCCCCeeeCCCCChHhHHHHHHhh
Q 043779 289 G----------SKGSSVVVTTR----LA-----KVASIVGTLPVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 289 ~----------~~gs~iivTtr----~~-----~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 331 (581)
. ..+..+|.|+. .. .+...+. ..+.+.+++.++..+++...
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~--~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP--IRVELTALSAADFERILTEP 214 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCC--EEEECCCCCHHHHHHHHHSS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCC--ceEEcCCcCHHHHHHHHHhh
Confidence 2 12445666642 11 1222221 36899999999999998853
No 63
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=8.9e-05 Score=75.89 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=98.3
Q ss_pred CccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.++.|-++.+++|.+.+..+- .+-..++-|.++|+||+|||+||+++++. ....| +.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~--- 252 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIV--- 252 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTC---
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhc---
Confidence 457888888888877654311 12234567889999999999999999983 33222 122222111
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc-----------c---hhhHHHHhhhcC--CCCCC
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE-----------D---QEKWDQLKCTLT--CGSKG 292 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-----------~---~~~~~~l~~~l~--~~~~g 292 (581)
.... ......+.......-...+++|++|++... + ......+...+. ....+
T Consensus 253 -----------sk~~-Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 253 -----------DKYI-GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp -----------CSSS-SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred -----------cccc-hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 1100 111111222222222357899999999531 0 011233443333 23345
Q ss_pred cEEEEecCchhHHHh-h-CC---CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 293 SSVVVTTRLAKVASI-V-GT---LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 293 s~iivTtr~~~v~~~-~-~~---~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
..||.||...+.... + .. ...+.+...+.++-.++|+.+..........+ ...|++.+.|.-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 678888875543322 1 11 23678888888888888887764433222222 356677777754
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.91 E-value=0.00016 Score=80.72 Aligned_cols=150 Identities=16% Similarity=0.173 Sum_probs=81.4
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccc---cCCcCceeEEEecCCCcHhHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRI---KRHFEFRIWVFVFEDFNVRRLMTD 233 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~F~~~~wv~v~~~~~~~~l~~~ 233 (581)
+.++||+.+++.+...|.... ..-+.++|++|+|||++|+.+.+...- .......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~-----~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT-----KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-----SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCccCchHHHHHHHHHHhCCC-----CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 468999999999999997632 234679999999999999999873210 00011111222111
Q ss_pred HHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHHhh-----
Q 043779 234 IITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASIV----- 308 (581)
Q Consensus 234 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~----- 308 (581)
.....+. ....+...+......++.+|++|.- ....+.+...+. ....++|.||.........
T Consensus 245 -g~~~~G~-----~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~a 312 (758)
T 3pxi_A 245 -GTKYRGE-----FEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAA 312 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred -cccccch-----HHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHH
Confidence 0000010 0112222333333467889999921 122233444443 2345677776654421111
Q ss_pred --CCCCeeeCCCCChHhHHHHHHhhhc
Q 043779 309 --GTLPVYRLSDLSEDDCWLLFKQRAF 333 (581)
Q Consensus 309 --~~~~~~~l~~L~~~e~~~lf~~~a~ 333 (581)
.....+.+.+.+.++..+++.....
T Consensus 313 l~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 313 LERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 1124689999999999999986543
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.91 E-value=0.00011 Score=82.15 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=86.8
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccC----CcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKR----HFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~ 232 (581)
+.++||+.+++.+.+.|... ...-+.|+|++|+|||++|+.+.+...... .....+| .+. ...+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-----~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~-~~~----~~~l-- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-----RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY-SLD----IGSL-- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE-ECC----CC----
T ss_pred CCccCCHHHHHHHHHHHhcc-----CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE-EEc----HHHH--
Confidence 46899999999999999754 223467999999999999999987321110 0112222 111 0000
Q ss_pred HHHHhhCCCCCCcCCHH-HHHHHHHHHhcCcceEEEEeccccc---------chhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 233 DIITSSGGNVSEAWNLD-LLQRRLKDMLDGKRYLLVLDDVWNE---------DQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~-~l~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
+.+... ....+ .+...+......++.+|++|+++.. .....+.+...+. ..+..+|.+|...
T Consensus 254 -----~~~~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -----LAGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQ 325 (758)
T ss_dssp ------CCCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHH
T ss_pred -----hccccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCch
Confidence 001111 11222 2333333333346789999999654 1112223333333 2345677777654
Q ss_pred hHHHhhC-------CCCeeeCCCCChHhHHHHHHhhh
Q 043779 303 KVASIVG-------TLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 303 ~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
....... ....+.+.+.+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4322111 11268899999999988887654
No 66
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00012 Score=74.78 Aligned_cols=177 Identities=18% Similarity=0.128 Sum_probs=96.7
Q ss_pred ccccchhhHHHHHHHHhc----Cc----CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 158 EVYGREEDKEKIVERLVK----DV----AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~----~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
++.|-++.+++|.+.+.- .. -+-...+-|.++|++|+|||.||+.+++. ....| +.+..+.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~------ 278 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSE------ 278 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG------
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHH------
Confidence 578888888888775432 10 12235667789999999999999999983 33222 1222211
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc--------------hhhHHHHhhhcC--CCCCCc
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED--------------QEKWDQLKCTLT--CGSKGS 293 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~--~~~~gs 293 (581)
+..... ......+.......-...+++|++|++.... ......+...+. ....+.
T Consensus 279 --------L~sk~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 279 --------LVQKYV-GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp --------GCCCSS-SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred --------hhcccC-CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 111110 1111122222222234578999999985310 011222333332 223455
Q ss_pred EEEEecCchhHHH--hh--C-CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 294 SVVVTTRLAKVAS--IV--G-TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 294 ~iivTtr~~~v~~--~~--~-~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
.||.||...+... .. + -...+.+...+.++-.++|+.+.........-+ ...|++.|.|.-
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 6677776443211 11 2 234788888888888899987764433222222 356777887753
No 67
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=7.6e-05 Score=76.34 Aligned_cols=176 Identities=16% Similarity=0.096 Sum_probs=95.5
Q ss_pred CccccchhhHHHHHHHHhc----Cc----CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVK----DV----AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.++.|-++.+++|.+.+.. +. .+-..++-|.++|+||+|||.||+++++. ....| +.+..+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~----- 250 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQ----- 250 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG-----
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhh-----
Confidence 4578999988888776432 11 12234567889999999999999999983 33222 1222211
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHH-HhcCcceEEEEeccccc-------ch-------hhHHHHhhhcCC--CCC
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKD-MLDGKRYLLVLDDVWNE-------DQ-------EKWDQLKCTLTC--GSK 291 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdv~~~-------~~-------~~~~~l~~~l~~--~~~ 291 (581)
+..... ...+...+.+.. .-...+++|++|++... .. .....+...+.. ...
T Consensus 251 ---------l~~~~v--Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 251 ---------LVQMYI--GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ---------GCSSCS--SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ---------hhhccc--chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 111111 011122222222 22346899999998421 00 112233334432 234
Q ss_pred CcEEEEecCchhHHHh-h-C---CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC
Q 043779 292 GSSVVVTTRLAKVASI-V-G---TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV 357 (581)
Q Consensus 292 gs~iivTtr~~~v~~~-~-~---~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~ 357 (581)
+..||.||...+.... + . -...+.+...+.++-.++|+.+.........-+ ...|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 5567778875543222 1 1 123678888888888888876654322222222 45677778775
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.84 E-value=2.4e-05 Score=87.34 Aligned_cols=154 Identities=18% Similarity=0.256 Sum_probs=88.9
Q ss_pred CccccchhhHHHHHHHHhcCcCC----CCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAG----SDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
..++|.+..++.+...+.....+ ......+.++|++|+|||++|+.+.+. ....-...+.++++.-....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 45899999999888887653221 122346889999999999999999873 21111223344443221100
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCC-----------CCCcEEEEecCc
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCG-----------SKGSSVVVTTRL 301 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 301 (581)
... ...+...++. ...-+|+||++........+.+...+..+ .....||+||..
T Consensus 565 ----------~~~--~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ----------STS--GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------CCC-----CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------ccc--cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000 1111122221 23459999999877777777777666532 135688899873
Q ss_pred h-----hH----HH-----hhCCC-CeeeCCCCChHhHHHHHHhh
Q 043779 302 A-----KV----AS-----IVGTL-PVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 302 ~-----~v----~~-----~~~~~-~~~~l~~L~~~e~~~lf~~~ 331 (581)
. .+ .. ..... ..+.+.+++.++...++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 1 11 11 11222 37889999988888777654
No 69
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.82 E-value=0.00019 Score=74.52 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=96.7
Q ss_pred CccccchhhHHHHHHHHhc---Cc----CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVK---DV----AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~---~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++++.+.+.. .. -+....+-+.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 4688998877777665432 10 01112334779999999999999999983 22222 22222211110
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccch--------------hhHHHHhhhcC--CCCCCc
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ--------------EKWDQLKCTLT--CGSKGS 293 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~gs 293 (581)
+ . ..........+.......+.+|+||++..... .....+...+. ....+.
T Consensus 89 --------~----~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F----V-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C----T-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H----h-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 0 00112223334444456789999999954211 12233333332 123456
Q ss_pred EEEEecCchhHHH-h-hC--C-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 294 SVVVTTRLAKVAS-I-VG--T-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 294 ~iivTtr~~~v~~-~-~~--~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
.||.||...+... . .. . ...+.+...+.++-.+++..++.........+ ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 7777777654322 1 11 1 12678888888888888877664332212222 345788888877
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00018 Score=72.78 Aligned_cols=176 Identities=14% Similarity=0.068 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHHhcC----c----CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKD----V----AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~----~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.++.|-++.+++|.+.+... . .+-...+-|.++|++|.|||.||+++++. ....| +.++..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f-----i~v~~s---- 250 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF-----LRIVGS---- 250 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE-----EEEESG----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE-----EEEEHH----
Confidence 45778888888887765321 1 12234567889999999999999999983 33222 222211
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHH-HHhcCcceEEEEecccccc--------------hhhHHHHhhhcC--CCCC
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLK-DMLDGKRYLLVLDDVWNED--------------QEKWDQLKCTLT--CGSK 291 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~-~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~--~~~~ 291 (581)
.+..... .+.+...+.+. ..-...+++|++|++.... ......+...+. ....
T Consensus 251 --------~l~sk~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 251 --------ELIQKYL--GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp --------GGCCSSS--SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred --------HhhhccC--chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 0111110 11122222222 2223568999999985310 011223333332 2334
Q ss_pred CcEEEEecCchhHHHh-h-C--C-CCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC
Q 043779 292 GSSVVVTTRLAKVASI-V-G--T-LPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV 357 (581)
Q Consensus 292 gs~iivTtr~~~v~~~-~-~--~-~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~ 357 (581)
+..||.||...+.... + . . ...+.+...+.++-.++|..+.........-+ ...|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 5577778875554322 1 1 1 12577888888888888887764433222223 45667777775
No 71
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00027 Score=72.23 Aligned_cols=177 Identities=19% Similarity=0.185 Sum_probs=92.7
Q ss_pred CccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.++.|-++.+++|.+.+.... .+-...+-+.++|+||+|||+||+++++. ....| +.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc--
Confidence 467899998888877654211 12234566889999999999999999983 33222 2222221110
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc-----------c---hhhHHHHhhhcC--CCCCC
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE-----------D---QEKWDQLKCTLT--CGSKG 292 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-----------~---~~~~~~l~~~l~--~~~~g 292 (581)
.. -......+.......-...+++|++|++... + ......+...+. ....+
T Consensus 245 ------------~~-~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 ------------KY-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp ------------SS-CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred ------------cc-cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 00 0111122222222223457899999998421 0 011233333333 23345
Q ss_pred cEEEEecCchhHH-H-hhCC---CCeeeCCCC-ChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC
Q 043779 293 SSVVVTTRLAKVA-S-IVGT---LPVYRLSDL-SEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV 357 (581)
Q Consensus 293 s~iivTtr~~~v~-~-~~~~---~~~~~l~~L-~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~ 357 (581)
..||.||...+.. . .... ...+.+..+ +.++-..+|..+..........+ ...|++.+.|.
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 6777788754321 1 1121 225677655 44555566666554332222222 45667777775
No 72
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.73 E-value=2e-05 Score=68.67 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+.|+|++|+|||||++.++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999984
No 73
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.65 E-value=1.9e-05 Score=76.16 Aligned_cols=157 Identities=16% Similarity=0.061 Sum_probs=80.9
Q ss_pred CccccchhhHHHHHHHHhcCcC-------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKDVA-------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
.+++|.+..++.+.+.+..-.. +....+-+.|+|++|+|||+||+.+++. ....|-. +..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~~---v~~~~~~---- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFFS---MGGSSFI---- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCCC---CCSCTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEEE---echHHHH----
Confidence 4689999888888776542000 0012233679999999999999999983 2222211 1111100
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchh---------------hHHHHhhhcCC---CCC
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQE---------------KWDQLKCTLTC---GSK 291 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~---------------~~~~l~~~l~~---~~~ 291 (581)
..+.+... ..... .+......++.+|+||++...... ....+...+.. ...
T Consensus 82 ------~~~~~~~~--~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 82 ------EMFVGLGA--SRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp ------TSCSSSCS--SSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred ------HhhcchHH--HHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 00111100 01111 112222345689999999543211 11222222221 112
Q ss_pred CcEEEEecCchhHHH--hhC---CCCeeeCCCCChHhHHHHHHhhhc
Q 043779 292 GSSVVVTTRLAKVAS--IVG---TLPVYRLSDLSEDDCWLLFKQRAF 333 (581)
Q Consensus 292 gs~iivTtr~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~a~ 333 (581)
...||.||....... ... ....+.+...+.++-.+++...+.
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 356777777553211 111 124678888888888888877653
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.63 E-value=0.00043 Score=76.24 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=98.3
Q ss_pred CccccchhhHHHHHHHHhc----Cc----CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVK----DV----AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.++.|-++.+++|.+++.- +. .+-..++-|.++|++|+|||+||+.+++. ...+| +.++.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH------
Confidence 3577888888888776532 11 12234567889999999999999999983 33222 222221
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc-----------hhhHHHHhhhcCC--CCCCcEE
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED-----------QEKWDQLKCTLTC--GSKGSSV 295 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~i 295 (581)
++.... .......+...........+.+|+||++.... ......+...+.. ...+..|
T Consensus 273 ----~l~sk~-----~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 273 ----EIMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ----HHHSSC-----TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred ----Hhhccc-----chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 111111 11122233333344445678999999995321 0112223333321 2234456
Q ss_pred EEecCchhHH-HhhC----CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 296 VVTTRLAKVA-SIVG----TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 296 ivTtr~~~v~-~~~~----~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
|.||...+.. ..+. -...+.+...+.++-.++|..+..........+ ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 6666644322 2221 123688888899988899887764332222222 456777887764
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.55 E-value=0.00021 Score=79.74 Aligned_cols=134 Identities=18% Similarity=0.241 Sum_probs=73.3
Q ss_pred CccccchhhHHHHHHHHhcCcCC----CCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAG----SDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
..++|.+..++.+...+.....+ ......+.++|++|+|||++|+.+.+. ... ..+.++.+.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~~---~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HTC---EEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcC---CEEEEechhhcchhh---
Confidence 35789998888888777543211 123347889999999999999999873 221 122334332211100
Q ss_pred HHHHhhCCCCCCcCCHHHHHHHHHHHh-cCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEecC
Q 043779 233 DIITSSGGNVSEAWNLDLLQRRLKDML-DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVTTR 300 (581)
Q Consensus 233 ~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 300 (581)
...+.+..+.....++ ...+.+.+ +....+|+||++........+.+...+..+. ....||.||.
T Consensus 530 --~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 0011111111100110 11122222 2346799999998777777777776665321 2355888886
Q ss_pred c
Q 043779 301 L 301 (581)
Q Consensus 301 ~ 301 (581)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.55 E-value=0.00029 Score=79.56 Aligned_cols=135 Identities=18% Similarity=0.256 Sum_probs=73.8
Q ss_pred CccccchhhHHHHHHHHhcCcCC----CCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAG----SDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMT 232 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 232 (581)
..++|.+..++.+...+.....+ ......+.|+|++|+|||++|+.+.+. ....-...+.++++..... ..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~-~~-- 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEK-HA-- 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSS-GG--
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccch-hH--
Confidence 35799999999988887653211 112357889999999999999999873 2111111223333322211 00
Q ss_pred HHHHhhCCCCCC---cCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCC-----------CCcEEEEe
Q 043779 233 DIITSSGGNVSE---AWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGS-----------KGSSVVVT 298 (581)
Q Consensus 233 ~il~~l~~~~~~---~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 298 (581)
...+.+..+. ......+...+.. ...-+|+||++........+.+...+..+. .+..||+|
T Consensus 633 --~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 633 --VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp --GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred --HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 0111111110 0001122222222 234699999998877777777877776432 24458888
Q ss_pred cCc
Q 043779 299 TRL 301 (581)
Q Consensus 299 tr~ 301 (581)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 874
No 77
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.44 E-value=0.00062 Score=67.72 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=86.8
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
+.++|++..++.+...+... .-+.++|++|+|||+||+.+.+ .....| ..+.........++. .
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~-------~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~----g 90 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG-------GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLI----G 90 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-------CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHH----E
T ss_pred cceeCcHHHHHHHHHHHHcC-------CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcC----C
Confidence 45789999999888887652 2467999999999999999987 332222 223333222222221 1
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcC--cceEEEEecccccchhhHHHHhhhcCCC-----------CCCcEEEEecCchh
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDG--KRYLLVLDDVWNEDQEKWDQLKCTLTCG-----------SKGSSVVVTTRLAK 303 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~~ 303 (581)
......... .. ....+ ...++++|++..........+...+... .....|+.|++...
T Consensus 91 ~~~~~~~~~-~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 91 TMIYNQHKG-NF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp EEEEETTTT-EE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred ceeecCCCC-ce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 110000000 00 00001 1259999999877666555555544321 23455666665222
Q ss_pred ------H-HHhhCCCC-eeeCCCCChHhHHHHHHhhhcC
Q 043779 304 ------V-ASIVGTLP-VYRLSDLSEDDCWLLFKQRAFG 334 (581)
Q Consensus 304 ------v-~~~~~~~~-~~~l~~L~~~e~~~lf~~~a~~ 334 (581)
+ ........ .+.+.+.+.++-.+++.+.+..
T Consensus 162 ~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 162 QEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred ccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1 11222223 5889999999999999887643
No 78
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.34 E-value=0.00092 Score=74.62 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=85.4
Q ss_pred CccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.+++|.+..+++|.+++.... -+-.....|.|+|++|+||||||+.+... ....| +.++..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~------ 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch------
Confidence 468999999999988875310 01123456889999999999999999873 32222 222211
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc-----------hhhHHHHhhhcCC--CCCCcEE
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED-----------QEKWDQLKCTLTC--GSKGSSV 295 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~i 295 (581)
+ +..... ......+...+.......+.++++|++.... ......+...+.. ...+..+
T Consensus 273 ~--------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 273 E--------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp H--------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred H--------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 0 101100 0011122223333333467899999994211 1112223333321 1234566
Q ss_pred EEecCchhHH-HhhC---C-CCeeeCCCCChHhHHHHHHhhhcC
Q 043779 296 VVTTRLAKVA-SIVG---T-LPVYRLSDLSEDDCWLLFKQRAFG 334 (581)
Q Consensus 296 ivTtr~~~v~-~~~~---~-~~~~~l~~L~~~e~~~lf~~~a~~ 334 (581)
|.||...... ..+. . ...+.+...+.++-.+++...+..
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 6666644221 1111 1 135678888889988988876543
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.29 E-value=0.001 Score=64.80 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.++.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999983
No 80
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.21 E-value=0.00018 Score=70.69 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 163 EEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...++.+.+++..... .....+.|+|++|+|||+||..+++.
T Consensus 134 ~~~~~~~~~~i~~~~~--~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS--AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHCSC--SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445556666654321 12356789999999999999999984
No 81
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.19 E-value=0.00033 Score=68.13 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=44.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEe--cCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFV--FEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
+++.|+|++|+|||+||.++... .-..+.|++. .+..+.. . .+.+.....+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~---------------~-~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGY---------------N-TDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTC---------------B-CCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhh---------------h-cCHHHHHHHHHHHHhh
Confidence 56789999999999999999873 1223567777 2221110 0 3455555555555655
Q ss_pred cceEEEEecccc
Q 043779 262 KRYLLVLDDVWN 273 (581)
Q Consensus 262 k~~LlVlDdv~~ 273 (581)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 55 999999943
No 82
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.15 E-value=0.0021 Score=65.19 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999997
No 83
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.13 E-value=0.0019 Score=68.75 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=78.6
Q ss_pred CccccchhhHHHHHHHHhcCc-CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDV-AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il 235 (581)
.+++|-++....+.+.+.-.. .......++.++|++|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 457888877777655443111 11113458899999999999999999873 22222 1222222112111111100
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchh----hHHHHhhhcCCCC---------------CCcEEE
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQE----KWDQLKCTLTCGS---------------KGSSVV 296 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ii 296 (581)
...+ . ....+...+..... ..-+++||++...... ....+...+.... ....+|
T Consensus 156 ~~ig-~-----~~~~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVG-A-----MPGRIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhc-c-----CchHHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 0000 0 01111122222212 2338889999654432 2233444442211 334677
Q ss_pred EecCchh-----HHHhhCCCCeeeCCCCChHhHHHHHHhhh
Q 043779 297 VTTRLAK-----VASIVGTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 297 vTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
.||.... +...+ ..+.+.+++.++-..++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 7776432 22222 368999999999888887754
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.05 E-value=0.0081 Score=57.88 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=88.0
Q ss_pred CCccccchhhHHHHHHHHhcCcC-------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 156 QPEVYGREEDKEKIVERLVKDVA-------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
-++++|.+..+.++.+....-.. +-.-.+-+.|+|++|+|||||++.++... .. ..+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~~---~~i~~~~~------ 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGS------ 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--TC---CEEEEEHH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--CC---CEEEecHH------
Confidence 35688988777766554432100 00111227899999999999999999732 21 12222211
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEeccccc-----------c---hhhHHHHhhhcCCCCC--C
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNE-----------D---QEKWDQLKCTLTCGSK--G 292 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-----------~---~~~~~~l~~~l~~~~~--g 292 (581)
.+ ...... .....+....+..-...+.++++|++... . ......+...+..+.. .
T Consensus 108 ~~----~~~~~~-----~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 108 DF----VEMFVG-----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HH----HHSTTT-----HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HH----HHHHhh-----HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 111000 00111112222222245689999999421 0 0111223333332222 2
Q ss_pred cEEEEecCchhHHH-h-h---CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 293 SSVVVTTRLAKVAS-I-V---GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 293 s~iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
..++.||..+++.. . . .....+.+...+.++-.+++...+.......... ...++..+.|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 34445555444321 1 1 2234788888888888888876653322111111 345667777754
No 85
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.04 E-value=0.0042 Score=61.95 Aligned_cols=157 Identities=14% Similarity=-0.050 Sum_probs=100.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHHH-Hhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLKD-MLD 260 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~ 260 (581)
-.++..++|+.|.||++.+..+..... ...|+....+.+... .+..++.+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPN---------------------TDWNAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTT---------------------CCHHHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCC---------------------CCHHHHHHHhcCcCCc
Confidence 345888999999999999988876321 122322111122222 233333333322 123
Q ss_pred CcceEEEEecccc-cchhhHHHHhhhcCCCCCCcEEEEecCc-------hhHHHhh-CCCCeeeCCCCChHhHHHHHHhh
Q 043779 261 GKRYLLVLDDVWN-EDQEKWDQLKCTLTCGSKGSSVVVTTRL-------AKVASIV-GTLPVYRLSDLSEDDCWLLFKQR 331 (581)
Q Consensus 261 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~ 331 (581)
+++-++|+|+++. .....++.+...+....+++.+|+++.. ..+...+ .....++..+++.++...++.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5677889999976 5566788888888766677777776642 2344443 33458899999999999888877
Q ss_pred hcCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 043779 332 AFGNDTEPPMNILAIAKEIVKKCKGVPLAAKT 363 (581)
Q Consensus 332 a~~~~~~~~~~l~~~~~~I~~~~~G~PLai~~ 363 (581)
+...+...++ +.+..|++.++|.+..+..
T Consensus 155 ~~~~g~~i~~---~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLELDD---AANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCEECH---HHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCCCCH---HHHHHHHHHhchHHHHHHH
Confidence 6433322222 6688899999999887764
No 86
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.03 E-value=0.01 Score=61.96 Aligned_cols=175 Identities=17% Similarity=0.156 Sum_probs=92.1
Q ss_pred CCccccchhhHHHHHHHHh---cCcC----CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 156 QPEVYGREEDKEKIVERLV---KDVA----GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~---~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
-.+++|.+..+.++.+... .... +..-.+-+.|+|++|+||||||+.++.. .... .+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARVP---FITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCC---EEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEehhHHHH--
Confidence 3568999887776665543 2110 0011233889999999999999999973 2211 22232211000
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhc----CcceEEEEecccccc----------h----hhHHHHhhhcCCC-
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLD----GKRYLLVLDDVWNED----------Q----EKWDQLKCTLTCG- 289 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~----~k~~LlVlDdv~~~~----------~----~~~~~l~~~l~~~- 289 (581)
.. .......+...++ ..+.++++|++.... . .....+...+..+
T Consensus 103 ------------~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------SC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------hh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 00 0111222333332 235799999994321 1 1123343334322
Q ss_pred -CCCcEEEEecCchhHHHh-h----CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 290 -SKGSSVVVTTRLAKVASI-V----GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 290 -~~gs~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
..+..++.||+.++.... + .....+.+...+.++-.+++..++.......... ...|+..+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 234456666766654221 1 1123788888899888888887654322111111 445777777765
No 87
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.02 E-value=0.0097 Score=62.21 Aligned_cols=154 Identities=11% Similarity=0.185 Sum_probs=80.2
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCC-cHhHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDF-NVRRLMTDII 235 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~il 235 (581)
+.++|+++.++.+...+... .-|.|+|++|+|||+||+.+.+...... .+....-.+ ...+ ++
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-------~~VLL~GpPGtGKT~LAraLa~~l~~~~-----~f~~~~~~~~t~~d----L~ 85 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLMTRFSTPEE----VF 85 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-------CEEEEECCSSSSHHHHHHHGGGGBSSCC-----EEEEECCTTCCHHH----HH
T ss_pred hhhHHHHHHHHHHHHHHhcC-------CeeEeecCchHHHHHHHHHHHHHHhhhh-----HHHHHHHhcCCHHH----hc
Confidence 35789999998888877642 2567999999999999999998332111 122222222 2222 21
Q ss_pred HhhCCCCCCcCCHHHHHHHHHHHhcC---cceEEEEecccccchhhHHHHhhhcCCCC---------CCc-EEEEecCch
Q 043779 236 TSSGGNVSEAWNLDLLQRRLKDMLDG---KRYLLVLDDVWNEDQEKWDQLKCTLTCGS---------KGS-SVVVTTRLA 302 (581)
Q Consensus 236 ~~l~~~~~~~~~~~~l~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs-~iivTtr~~ 302 (581)
........ .. ...+.....+ ..-++++|+++.........+...+..+. ... -+|+||...
T Consensus 86 G~~~~~~~--~~----~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~l 159 (500)
T 3nbx_X 86 GPLSIQAL--KD----EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNEL 159 (500)
T ss_dssp CCBC----------------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSC
T ss_pred CcccHHHH--hh----chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccC
Confidence 11100000 00 0001111111 23479999998776666666666553210 111 346777531
Q ss_pred hH-----HHhhCC-CCeeeCCCCCh-HhHHHHHHhhh
Q 043779 303 KV-----ASIVGT-LPVYRLSDLSE-DDCWLLFKQRA 332 (581)
Q Consensus 303 ~v-----~~~~~~-~~~~~l~~L~~-~e~~~lf~~~a 332 (581)
.- ...... ...+.+++++. ++-..++....
T Consensus 160 pe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 160 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 11 011111 22577888887 55567776654
No 88
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.01 E-value=0.0066 Score=57.62 Aligned_cols=178 Identities=16% Similarity=0.117 Sum_probs=86.2
Q ss_pred CccccchhhHHHHHHHHhcCcC-------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhH
Q 043779 157 PEVYGREEDKEKIVERLVKDVA-------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRR 229 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 229 (581)
++++|.+..+.++.+....-.. +-.-.+-+.|+|++|+|||||++.++... ... .+.+.. ..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~~~---~i~~~~------~~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RVP---FITASG------SD 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--TCC---EEEEEH------HH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCC---EEEeeH------HH
Confidence 4678887766666544321100 00111238899999999999999999732 211 122221 11
Q ss_pred HHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccc----------hh----hHHHHhhhcCCCC--CCc
Q 043779 230 LMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNED----------QE----KWDQLKCTLTCGS--KGS 293 (581)
Q Consensus 230 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~----------~~----~~~~l~~~l~~~~--~gs 293 (581)
+ .....+ .....+...++..-...+.++++|++.... .. ....+...+..+. ...
T Consensus 85 ~----~~~~~~-----~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 85 F----VEMFVG-----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp H----HHSCTT-----HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred H----HHHHhh-----HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 1 111000 001112222222222356899999993210 01 1223333333222 223
Q ss_pred EEEEecCchhHHHh-h----CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCCc
Q 043779 294 SVVVTTRLAKVASI-V----GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGVP 358 (581)
Q Consensus 294 ~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~P 358 (581)
.++.||..++.... + .....+.+...+.++-.+++...+.+.......+ ...|++.+.|.-
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 45556665544221 1 1123678888888888888876653222111111 345666776654
No 89
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.98 E-value=0.0089 Score=57.49 Aligned_cols=155 Identities=16% Similarity=0.061 Sum_probs=77.8
Q ss_pred CccccchhhHHHHHHHHhcCc--------CCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh
Q 043779 157 PEVYGREEDKEKIVERLVKDV--------AGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR 228 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 228 (581)
.++.|-++.+++|.+.+...- -+-.-.+-+.|+|++|+||||||+.++.. ... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM- 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh-
Confidence 456788877777766542110 00011122889999999999999999973 221 1223322111000
Q ss_pred HHHHHHHHhhCCCCCCcCCHHHHHHHHHHH-hcCcceEEEEecccccc-----------hhhHHHHhhhcCCC--CCCcE
Q 043779 229 RLMTDIITSSGGNVSEAWNLDLLQRRLKDM-LDGKRYLLVLDDVWNED-----------QEKWDQLKCTLTCG--SKGSS 294 (581)
Q Consensus 229 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~ 294 (581)
.. .........+.+. -...+.++++|++.... ......+...+..+ ....-
T Consensus 84 -------------~~--~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 84 -------------YV--GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp -------------TT--HHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred -------------hh--hHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 00 0001111112221 13457899999985311 01122233333322 22345
Q ss_pred EEEecCchhHHHh--h---CCCCeeeCCCCChHhHHHHHHhhh
Q 043779 295 VVVTTRLAKVASI--V---GTLPVYRLSDLSEDDCWLLFKQRA 332 (581)
Q Consensus 295 iivTtr~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~a 332 (581)
++.+|..+++... . .-...+.+...+.++-.++|+...
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 5566665554322 1 122367888888888888888765
No 90
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.93 E-value=0.001 Score=61.64 Aligned_cols=112 Identities=15% Similarity=0.000 Sum_probs=62.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC--CcCCHHHHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS--EAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~--~~~~~~~l~~~l~~~l~ 260 (581)
-.++.|+|.+|+||||++..+.+. ...+-..++.+....+. . ....++..++.... ......++...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 368889999999999999888773 22222233333322221 1 11233344432211 12334455555655554
Q ss_pred Cc-ceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 261 GK-RYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 261 ~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
+. .-+||+|.+...+....+.+.. +.+ .|..||+|-+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 44 4499999997655445454443 222 267899998843
No 91
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.91 E-value=0.0047 Score=61.69 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=32.1
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.+..+..+...+.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~-----~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG-----IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG-----GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC-----CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886665544443221 123779999999999999999873
No 92
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.89 E-value=0.0031 Score=58.24 Aligned_cols=84 Identities=23% Similarity=0.129 Sum_probs=49.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCC------------CCCCcCCHHH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGG------------NVSEAWNLDL 250 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~------------~~~~~~~~~~ 250 (581)
-.++.|+|++|+|||||+..++. . .-..++|++....++...+.. +....+. .........+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35889999999999999999986 1 113466777665445544432 3332221 0111112223
Q ss_pred HHHHHHHHhcCcceEEEEeccc
Q 043779 251 LQRRLKDMLDGKRYLLVLDDVW 272 (581)
Q Consensus 251 l~~~l~~~l~~k~~LlVlDdv~ 272 (581)
....++..+..+.-+||+|.+.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 3444445544456789999874
No 93
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.57 E-value=0.0052 Score=57.26 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=58.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC--------------------
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-------------------- 243 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-------------------- 243 (581)
.++.|.|++|+|||||++.++......+ ..+.|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 5889999999999999999985322111 1344554332 3333333322 2221100
Q ss_pred ---CcCCHHHHHHHHHHHhc-Ccc--eEEEEeccccc---chhhHHHHhhhcCC--CCCCcEEEEecCch
Q 043779 244 ---EAWNLDLLQRRLKDMLD-GKR--YLLVLDDVWNE---DQEKWDQLKCTLTC--GSKGSSVVVTTRLA 302 (581)
Q Consensus 244 ---~~~~~~~l~~~l~~~l~-~k~--~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 302 (581)
...+..++...+...+. .++ .+||+|.+... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11145555555554442 233 49999998532 22222333322221 12467888888754
No 94
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.52 E-value=0.011 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998864
No 95
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.49 E-value=0.0061 Score=60.68 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=53.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCC-----CCcCCHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNV-----SEAWNLDLLQRRLK 256 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~-----~~~~~~~~l~~~l~ 256 (581)
.-.++.|.|++|+|||||+.+++......+ ..++|++....++.. .+..++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 346899999999999999999987432211 235687766655543 333443221 12345566666666
Q ss_pred HHhc-CcceEEEEeccc
Q 043779 257 DMLD-GKRYLLVLDDVW 272 (581)
Q Consensus 257 ~~l~-~k~~LlVlDdv~ 272 (581)
..++ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5554 456689999984
No 96
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.41 E-value=0.0033 Score=56.60 Aligned_cols=117 Identities=21% Similarity=0.095 Sum_probs=59.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC---CCcHhHHHHHHH---HhhCCCCC-CcC-------CHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE---DFNVRRLMTDII---TSSGGNVS-EAW-------NLD 249 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~l~~~il---~~l~~~~~-~~~-------~~~ 249 (581)
..|.|++..|.||||+|-...- +..++=..+.++.... ..+...++..+. ...+.... ... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566777788999999987765 3222222334444333 223333333320 00000000 010 112
Q ss_pred HHHHHHHHHhcC-cceEEEEeccccc---chhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 250 LLQRRLKDMLDG-KRYLLVLDDVWNE---DQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 250 ~l~~~l~~~l~~-k~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
......++.+.+ +-=|||||++-.. .....+.+...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 222334445544 4459999998321 2233445555665555677899999964
No 97
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.37 E-value=0.01 Score=57.55 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=52.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-----CcCCHHHH-HHHHHHH
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-----EAWNLDLL-QRRLKDM 258 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l-~~~l~~~ 258 (581)
++.|.|++|+|||||+.+++........=..++|++....++.. .++.++.... ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999999887643211112346788877777653 2555554322 23455555 3333332
Q ss_pred --h-cCcceEEEEecccc
Q 043779 259 --L-DGKRYLLVLDDVWN 273 (581)
Q Consensus 259 --l-~~k~~LlVlDdv~~ 273 (581)
+ .++.-|+|+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 35678999999844
No 98
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.35 E-value=0.0097 Score=58.77 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=37.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCC----cCceeEEEecCCCcHhHHHHHHHHhhC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRH----FEFRIWVFVFEDFNVRRLMTDIITSSG 239 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~l~~~il~~l~ 239 (581)
-.++.|+|++|+||||||.+++........ -..++|++....++..++.. ++..++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 358899999999999999998864221110 23567888887776665543 344443
No 99
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.33 E-value=0.0041 Score=56.77 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 162 REEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 162 R~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
|++.++.+.+.+..... ....+|+|.|++|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~--~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKT--AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCC--SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 55667788887775422 3557999999999999999999876
No 100
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.20 E-value=0.015 Score=57.98 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=38.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccC----CcCceeEEEecCCCcHhHHHHHHHHhh
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKR----HFEFRIWVFVFEDFNVRRLMTDIITSS 238 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~il~~l 238 (581)
.-.++.|+|++|+||||||.+++....... .-..++|++....++...+.. ++..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 456889999999999999999887422211 123567888887777665543 33444
No 101
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.19 E-value=0.014 Score=56.76 Aligned_cols=86 Identities=10% Similarity=0.116 Sum_probs=45.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc--HhHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHh
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN--VRRLMTDIITSSGGNVSEAWNLDLLQRRLKDML 259 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 259 (581)
...+++|+|++|+||||++..+.......... .+..+.. +.+. ..+.+.......+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITT-DTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEEC-CCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEec-CcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h
Confidence 34689999999999999999988633221121 2333333 2222 2223333333333222222344455444543 3
Q ss_pred cCcceEEEEecc
Q 043779 260 DGKRYLLVLDDV 271 (581)
Q Consensus 260 ~~k~~LlVlDdv 271 (581)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 44568888954
No 102
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.19 E-value=0.032 Score=61.47 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=81.1
Q ss_pred CCccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcH
Q 043779 156 QPEVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNV 227 (581)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 227 (581)
-.++.|.++.+++|.+.+..... +-...+-+.++|++|.|||.||+.+++. .... ++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEec----c
Confidence 34567888888887776543211 1123445679999999999999999983 2222 23332 1
Q ss_pred hHHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccch--------------hhHHHHhhhcCC--CCC
Q 043779 228 RRLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQ--------------EKWDQLKCTLTC--GSK 291 (581)
Q Consensus 228 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 291 (581)
. +++....+ .....+.......-+..+++|+||++...-. .....+...+.. ...
T Consensus 545 ~----~l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 545 P----ELLTMWFG-----ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp H----HHHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred c----hhhccccc-----hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 1 12222111 1223333333333345789999999953210 112334433432 223
Q ss_pred CcEEEEecCchhHHH--hh---CCCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHcCCC
Q 043779 292 GSSVVVTTRLAKVAS--IV---GTLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKCKGV 357 (581)
Q Consensus 292 gs~iivTtr~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~~G~ 357 (581)
+.-||-||..+.... .+ .-...+.+...+.++-.++|+.+.........-+ ...|++.+.|.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 334454665443211 11 2234677777777777777776654332222222 33455555553
No 103
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.17 E-value=0.0093 Score=55.95 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=49.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccC----CcCceeEEEecCCCcHhHHHHHHHHhhCCCC---------CCcCCHH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKR----HFEFRIWVFVFEDFNVRRLMTDIITSSGGNV---------SEAWNLD 249 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~---------~~~~~~~ 249 (581)
-.++.|+|++|+|||||+..++....... .-..++|+.....++...+. .++..++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35889999999999999999886321111 12456788776654444332 2333333211 0112222
Q ss_pred HH---HHHHHHHhc-CcceEEEEeccc
Q 043779 250 LL---QRRLKDMLD-GKRYLLVLDDVW 272 (581)
Q Consensus 250 ~l---~~~l~~~l~-~k~~LlVlDdv~ 272 (581)
+. ...+...+. .+.-+||+|++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 222333332 456788888874
No 104
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.16 E-value=0.011 Score=58.26 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=52.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccC---------Cc-----CceeEEEecCCCcHhHHHHHHHHhhCCCC-----
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKR---------HF-----EFRIWVFVFEDFNVRRLMTDIITSSGGNV----- 242 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~l~~~il~~l~~~~----- 242 (581)
.-.++.|+|.+|+|||+||.+++....... .. ..++|++....++..++.. ++..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 346899999999999999999886321110 11 3567888887776666553 334443221
Q ss_pred ----CCcCCHHH---HHHHHHHHhc--CcceEEEEecc
Q 043779 243 ----SEAWNLDL---LQRRLKDMLD--GKRYLLVLDDV 271 (581)
Q Consensus 243 ----~~~~~~~~---l~~~l~~~l~--~k~~LlVlDdv 271 (581)
....+.++ +...+...+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 11123332 3333444443 34568888887
No 105
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.08 E-value=0.014 Score=58.19 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=53.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-----CcCCHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-----EAWNLDLLQRRLK 256 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 256 (581)
.-.++.|.|++|+||||||.+++...... =..++|++....++.. ....++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34588999999999999999988632211 1346788877666543 2333432211 2235566665555
Q ss_pred HHhc-CcceEEEEecccc
Q 043779 257 DMLD-GKRYLLVLDDVWN 273 (581)
Q Consensus 257 ~~l~-~k~~LlVlDdv~~ 273 (581)
.... .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 5544 3567999999843
No 106
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.08 E-value=0.014 Score=58.46 Aligned_cols=83 Identities=20% Similarity=0.107 Sum_probs=53.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCC-----CCcCCHHHHHHHHHH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNV-----SEAWNLDLLQRRLKD 257 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~-----~~~~~~~~l~~~l~~ 257 (581)
-.++.|.|.+|+||||||.+++...... -..++|++....++.. .+..++... ....+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3588899999999999999987643222 2357888887766543 133333221 123456666666666
Q ss_pred Hhc-CcceEEEEeccc
Q 043779 258 MLD-GKRYLLVLDDVW 272 (581)
Q Consensus 258 ~l~-~k~~LlVlDdv~ 272 (581)
..+ ...-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 654 345699999984
No 107
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.97 E-value=0.02 Score=55.59 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.|++|+|||||++.++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58899999999999999998874
No 108
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.93 E-value=0.048 Score=51.58 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=26.3
Q ss_pred HHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 167 EKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 167 ~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.-+..||.... +....|.++|++|+|||.+|..+++
T Consensus 91 ~~l~~~l~~~~---~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKF---GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCS---TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCC---CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34556665321 2345688999999999999999987
No 109
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.90 E-value=0.014 Score=58.33 Aligned_cols=85 Identities=16% Similarity=0.073 Sum_probs=52.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-----CcCCHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-----EAWNLDLLQRRLK 256 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 256 (581)
.-.++.|.|.+|+||||||.+++...... -..++|++....++... +..++.... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34588999999999999999988643222 23577888877665431 333432211 1234555555555
Q ss_pred HHhc-CcceEEEEecccc
Q 043779 257 DMLD-GKRYLLVLDDVWN 273 (581)
Q Consensus 257 ~~l~-~k~~LlVlDdv~~ 273 (581)
...+ .+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 4432 4556999999843
No 110
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.88 E-value=0.054 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 111
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.88 E-value=0.11 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999863
No 112
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.80 E-value=0.009 Score=57.86 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 166 KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+++++..+...........+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322233567889999999999999999986
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.78 E-value=0.017 Score=52.27 Aligned_cols=69 Identities=13% Similarity=0.207 Sum_probs=40.1
Q ss_pred CCCceeEEEEeeCCCCCcccccccCCCcccEeeecC----------------CccccccCC--CCCC-cccCCccccceE
Q 043779 511 LSRQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECP-SDISKFHRLRAL 571 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp-~~i~~l~~LryL 571 (581)
.+..++.|.+ .++.....+..+..+++|++|.+.+ |+.|+|++. ..+| ..+++|.+|++|
T Consensus 29 ~~~~l~~L~L-~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 29 IPRDVTELYL-DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCTTCCEEEC-CSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEC-CCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 3456666766 4433332334556666677666543 666666643 3443 456777777777
Q ss_pred eeCCCCccc
Q 043779 572 EFIDPRLTK 580 (581)
Q Consensus 572 ~l~~~~i~~ 580 (581)
+|++|.|+.
T Consensus 108 ~L~~N~l~~ 116 (193)
T 2wfh_A 108 SLHGNDISV 116 (193)
T ss_dssp ECCSSCCCB
T ss_pred ECCCCCCCe
Confidence 777776654
No 114
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.74 E-value=0.035 Score=54.32 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=32.3
Q ss_pred ccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 160 YGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 160 vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|....+..+...+.... ......+|+|.|++|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~-~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP-EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC-CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC-CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455555665655555432 124677999999999999999999875
No 115
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.68 E-value=0.0016 Score=58.66 Aligned_cols=22 Identities=27% Similarity=0.093 Sum_probs=18.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.++.|+|++|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4778999999999999966665
No 116
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.64 E-value=0.019 Score=50.92 Aligned_cols=68 Identities=7% Similarity=0.105 Sum_probs=49.2
Q ss_pred CCCceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccC--CCCCCcc-cCCccccce
Q 043779 511 LSRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTN--SGECPSD-ISKFHRLRA 570 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~--~~~lp~~-i~~l~~Lry 570 (581)
.+...+.|.+ .++... ..+..+..+++|+.|.+.+ |++|+|++ ...+|.. +++|.+|++
T Consensus 31 ~~~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 31 IPTDKQRLWL-NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp CCTTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred cCCCCcEEEe-CCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence 4467788888 444432 2355567788888887654 78888875 3567765 889999999
Q ss_pred EeeCCCCcc
Q 043779 571 LEFIDPRLT 579 (581)
Q Consensus 571 L~l~~~~i~ 579 (581)
|+|++|.+.
T Consensus 110 L~L~~N~~~ 118 (174)
T 2r9u_A 110 IYLYNNPWD 118 (174)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCcc
Confidence 999998865
No 117
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.63 E-value=0.0056 Score=54.10 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=18.7
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLV 203 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v 203 (581)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 118
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.63 E-value=0.0055 Score=54.52 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999987
No 119
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.63 E-value=0.0089 Score=54.81 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 166 KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.++|.+.+... .....+++|+|++|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~---~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR---QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT---CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 13457999999999999999999886
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.63 E-value=0.015 Score=54.16 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=18.3
Q ss_pred CccccccCC--CCCCcccCCccccceEeeCCCCcc
Q 043779 547 TYPIILTNS--GECPSDISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~~i~ 579 (581)
|+.|+|++. ..+|..++++.+|++|+|++|.|+
T Consensus 114 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 114 LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred hCeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence 455555432 455555666666666666666554
No 121
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.59 E-value=0.0057 Score=54.00 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 122
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.56 E-value=0.011 Score=56.21 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 165 DKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+++...+...........+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33444444444333334567899999999999999999986
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=95.55 E-value=0.0087 Score=52.59 Aligned_cols=66 Identities=11% Similarity=0.231 Sum_probs=44.2
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC----------------CccccccCC--CCCC--cccCCccccceEe
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECP--SDISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp--~~i~~l~~LryL~ 572 (581)
...+.+.+ .++..... ..+..+++|++|.+.+ |++|+|+++ ..+| ..++++.+|++|+
T Consensus 49 ~~L~~L~l-~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 49 VNLEFLSL-INVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGCCEEEE-ESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCEEeC-cCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 45677777 44333212 4456677777776543 788888765 4555 6788888888888
Q ss_pred eCCCCccc
Q 043779 573 FIDPRLTK 580 (581)
Q Consensus 573 l~~~~i~~ 580 (581)
|++|.|+.
T Consensus 127 l~~N~l~~ 134 (168)
T 2ell_A 127 LFNCEVTN 134 (168)
T ss_dssp CCSSGGGT
T ss_pred eeCCcCcc
Confidence 88887764
No 124
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.55 E-value=0.021 Score=59.39 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=27.1
Q ss_pred ceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh
Q 043779 263 RYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK 303 (581)
Q Consensus 263 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 303 (581)
.-+||+|++...+...+..+...++ .+.++++.--..+
T Consensus 129 ~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 129 CRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp CSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred CCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 4589999998777777777777665 4667777665443
No 125
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.52 E-value=0.007 Score=53.85 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.47 E-value=0.0086 Score=53.91 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+++|+|++|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999987
No 127
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.44 E-value=0.0038 Score=69.67 Aligned_cols=50 Identities=28% Similarity=0.302 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhcCcC--------CCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 157 PEVYGREEDKEKIVERLVKDVA--------GSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|.+..++.+.+.+..... +-.....+.++|++|+|||+||+.+++.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 4578888888888877653211 1123345779999999999999999983
No 128
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.44 E-value=0.0098 Score=59.15 Aligned_cols=54 Identities=15% Similarity=-0.026 Sum_probs=33.4
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc-CCcCceeEEEecCCCc
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK-RHFEFRIWVFVFEDFN 226 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~~ 226 (581)
++++.+..-.. -..++|+|++|+|||||++.+.+..... ..+. ++++-+++...
T Consensus 163 raID~~~pi~r----GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~ 217 (422)
T 3ice_A 163 RVLDLASPIGR----GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPE 217 (422)
T ss_dssp HHHHHHSCCBT----TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHH
T ss_pred eeeeeeeeecC----CcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChH
Confidence 45566654322 2477899999999999999887632111 1222 34566665543
No 129
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.42 E-value=0.011 Score=59.42 Aligned_cols=48 Identities=25% Similarity=0.243 Sum_probs=34.8
Q ss_pred ccccchhhHHHHHHHHhcC----------cCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 158 EVYGREEDKEKIVERLVKD----------VAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~----------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.++|.+..++.+...+... .........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4689888888888777310 00001334677999999999999999997
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.42 E-value=0.025 Score=49.86 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=48.6
Q ss_pred CCCceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccC--CCCCCc-ccCCccccce
Q 043779 511 LSRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTN--SGECPS-DISKFHRLRA 570 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~--~~~lp~-~i~~l~~Lry 570 (581)
.+...+.|.+ .++... ..+..+..+++|++|.+.+ |++|+|++ .+.+|. .+++|.+|++
T Consensus 28 ~~~~l~~L~L-~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 28 IPTTTQVLYL-YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp CCTTCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCcEEEc-CCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence 3467788888 444432 2355567788888887654 88888875 356766 4889999999
Q ss_pred EeeCCCCcc
Q 043779 571 LEFIDPRLT 579 (581)
Q Consensus 571 L~l~~~~i~ 579 (581)
|+|++|.+.
T Consensus 107 L~L~~N~~~ 115 (170)
T 3g39_A 107 IWLLNNPWD 115 (170)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCCC
Confidence 999998764
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=95.38 E-value=0.0077 Score=51.75 Aligned_cols=66 Identities=12% Similarity=0.229 Sum_probs=42.6
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC----------------CccccccCC--CCCC--cccCCccccceEe
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECP--SDISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp--~~i~~l~~LryL~ 572 (581)
...+.+.+ .++..... ..+..+++|++|-+.+ |++|+++++ ..+| ..++++.+|++|+
T Consensus 42 ~~L~~L~l-~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 42 EELEFLST-INVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp TTCCEEEC-TTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred CCCcEEEC-cCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 45677777 33333212 4456677777776543 777777764 3443 7788888888888
Q ss_pred eCCCCccc
Q 043779 573 FIDPRLTK 580 (581)
Q Consensus 573 l~~~~i~~ 580 (581)
|++|.|+.
T Consensus 120 l~~N~l~~ 127 (149)
T 2je0_A 120 LFNCEVTN 127 (149)
T ss_dssp CTTCGGGG
T ss_pred CcCCcccc
Confidence 88887764
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.36 E-value=0.024 Score=52.43 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=19.2
Q ss_pred CccccccCC--CCC-CcccCCccccceEeeCCCCccc
Q 043779 547 TYPIILTNS--GEC-PSDISKFHRLRALEFIDPRLTK 580 (581)
Q Consensus 547 LrvL~l~~~--~~l-p~~i~~l~~LryL~l~~~~i~~ 580 (581)
|+.|+|++. ..+ |..++++.+|++|+|++|.|+.
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 555555542 233 4556666666666666666653
No 133
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.36 E-value=0.012 Score=58.72 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=60.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh--HHHHHHHHhhCCCCCCcCCHHHHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR--RLMTDIITSSGGNVSEAWNLDLLQRRLKDMLDG 261 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~--~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 261 (581)
.+++|+|+.|+|||||.+.+.... .......+ +.+.++.... .. ..++.+. ............+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~--~~~~~~~i-~t~ed~~e~~~~~~-~~~v~q~----~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL--NNTKYHHI-LTIEDPIEFVHESK-KCLVNQR----EVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH--HHHCCCEE-EEEESSCCSCCCCS-SSEEEEE----EBTTTBSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--cCCCCcEE-EEccCcHHhhhhcc-ccceeee----eeccccCCHHHHHHHHhhh
Confidence 489999999999999999887621 11111111 2222221100 00 0000000 0000112234477888888
Q ss_pred cceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHHh
Q 043779 262 KRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASI 307 (581)
Q Consensus 262 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 307 (581)
.+=+|++|++- +...++.+..... .|..||+|+...+.+..
T Consensus 196 ~PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 196 DPDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHHHH
T ss_pred CcCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHHHH
Confidence 89999999995 4455555444432 35568888886665543
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.33 E-value=0.012 Score=64.95 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=43.6
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC---------------CccccccCC--CCCCcccCCccccceEeeCC
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP---------------TYPIILTNS--GECPSDISKFHRLRALEFID 575 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~---------------LrvL~l~~~--~~lp~~i~~l~~LryL~l~~ 575 (581)
...+.|.+ .++.....+..+.++++|++|.+.+ |+.|+|++. +.+|..|++|.+|++|+|++
T Consensus 247 ~~L~~L~L-s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 247 DFLTRLYL-NGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCSCCBC-TTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCCEEEe-eCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 34566666 3333333445566777777776553 777777754 56777788888888888888
Q ss_pred CCcc
Q 043779 576 PRLT 579 (581)
Q Consensus 576 ~~i~ 579 (581)
|.|+
T Consensus 326 N~l~ 329 (727)
T 4b8c_D 326 NPLE 329 (727)
T ss_dssp SCCC
T ss_pred CccC
Confidence 7765
No 135
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.31 E-value=0.0095 Score=53.23 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|++|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5889999999999999999986
No 136
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.30 E-value=0.0084 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35889999999999999999986
No 137
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.29 E-value=0.0073 Score=54.18 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999986
No 138
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.24 E-value=0.11 Score=50.79 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=36.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhh
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSS 238 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l 238 (581)
-.++.|.|.+|+||||||..++.+....+ ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 35888999999999999999886433222 456666554 55666666666543
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.23 E-value=0.051 Score=55.01 Aligned_cols=56 Identities=21% Similarity=0.141 Sum_probs=34.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCcccc----CCcCceeEEEecCCCcHhHHHHHHHHhhC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIK----RHFEFRIWVFVFEDFNVRRLMTDIITSSG 239 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~l~~~il~~l~ 239 (581)
-.++.|+|++|+|||||+..++-..... ..-..++|++....+....+. .+...++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 3589999999999999999765311111 122346788776655544432 2444443
No 140
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.22 E-value=0.031 Score=51.98 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=51.9
Q ss_pred CCCCceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCcc-cCCccccc
Q 043779 510 HLSRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSD-ISKFHRLR 569 (581)
Q Consensus 510 ~~~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~-i~~l~~Lr 569 (581)
..+...+.|.+ .++... ..+..+..+++|+.|.+.+ |++|+|++. ..+|.. +++|.+|+
T Consensus 37 ~~~~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 37 GIPTNAQILYL-HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CCCTTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCEEEc-CCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 34567888888 444432 2345567788899887664 888898864 566655 68999999
Q ss_pred eEeeCCCCcccC
Q 043779 570 ALEFIDPRLTKF 581 (581)
Q Consensus 570 yL~l~~~~i~~l 581 (581)
+|+|++|.|+.+
T Consensus 116 ~L~Ls~N~l~~l 127 (229)
T 3e6j_A 116 ELFMCCNKLTEL 127 (229)
T ss_dssp EEECCSSCCCSC
T ss_pred eEeccCCccccc
Confidence 999999998754
No 141
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.21 E-value=0.053 Score=53.98 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=31.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCc---C-ceeEEEecCCCcHh
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHF---E-FRIWVFVFEDFNVR 228 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~-~~~wv~v~~~~~~~ 228 (581)
.-.++.|+|++|+|||||+..++......... . .++|++....+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 45799999999999999999998632111111 2 34788776554333
No 142
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.20 E-value=0.013 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999986
No 143
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.19 E-value=0.0076 Score=53.30 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|+|+|++|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 144
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.16 E-value=0.011 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999987
No 145
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.14 E-value=0.0095 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 146
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=95.14 E-value=0.02 Score=61.82 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=38.9
Q ss_pred CCCceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCC-CcccCCccccce
Q 043779 511 LSRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GEC-PSDISKFHRLRA 570 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~l-p~~i~~l~~Lry 570 (581)
.+..++++.+ .++... ..+..+.++++|++|-+.+ |++|+|+++ ..+ |..|++|.+|++
T Consensus 30 ~~~~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 30 IPSSTKNIDL-SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp SCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCCCcCEEEC-CCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 3456667766 333322 1233455666666666543 666666653 333 566666666666
Q ss_pred EeeCCCCccc
Q 043779 571 LEFIDPRLTK 580 (581)
Q Consensus 571 L~l~~~~i~~ 580 (581)
|+|++|.|+.
T Consensus 109 L~L~~n~l~~ 118 (606)
T 3vq2_A 109 LVAVETKLAS 118 (606)
T ss_dssp EECTTSCCCC
T ss_pred EEccCCcccc
Confidence 6666666543
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.13 E-value=0.037 Score=48.97 Aligned_cols=16 Identities=6% Similarity=0.119 Sum_probs=7.9
Q ss_pred CCccccceEeeCCCCc
Q 043779 563 SKFHRLRALEFIDPRL 578 (581)
Q Consensus 563 ~~l~~LryL~l~~~~i 578 (581)
.++.+|++|+|++|.+
T Consensus 121 ~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 121 DRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTCTTCCEEECCSSCB
T ss_pred cCCcccCEEEecCCCe
Confidence 4455555555555443
No 148
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.10 E-value=0.014 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+|.|+|++|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 149
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.10 E-value=0.13 Score=51.15 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 4889999999999999999876
No 150
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=95.09 E-value=0.036 Score=50.46 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=18.7
Q ss_pred CccccccCC--CCCCcc-cCCccccceEeeCCCCccc
Q 043779 547 TYPIILTNS--GECPSD-ISKFHRLRALEFIDPRLTK 580 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~-i~~l~~LryL~l~~~~i~~ 580 (581)
|++|+|++. ..+|.. ++++.+|++|+|++|.|+.
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 555555542 344433 4666666666666666543
No 151
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.04 E-value=0.021 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
....+|+|+|++|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999988763
No 152
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.03 E-value=0.046 Score=53.91 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=35.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhh
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSS 238 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l 238 (581)
-.++.|.|.+|+||||||..++.+.... =..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 3588899999999999999998753321 123445444 456667777665543
No 153
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.00 E-value=0.01 Score=54.12 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|.|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 154
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.96 E-value=0.013 Score=55.50 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|.|++|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999876
No 155
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=94.93 E-value=0.032 Score=54.01 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=10.0
Q ss_pred ccCCccccceEeeCCCCcc
Q 043779 561 DISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 561 ~i~~l~~LryL~l~~~~i~ 579 (581)
.+++|.+|++|+|++|.|+
T Consensus 119 ~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELK 137 (290)
T ss_dssp TTTTCTTCCEEECTTSCCC
T ss_pred HHcCCCCCCEEECCCCCCC
Confidence 3455555555555555544
No 156
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.93 E-value=0.014 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+++|+|++|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 458999999999999999999873
No 157
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.93 E-value=0.017 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+++|+|++|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 158
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.91 E-value=0.013 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 159
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.89 E-value=0.014 Score=53.14 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|+|++|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 160
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.88 E-value=0.078 Score=51.57 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=45.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHh--HHHHHHHHhhCCCC---CCcCCHHHH-HHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVR--RLMTDIITSSGGNV---SEAWNLDLL-QRRL 255 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~--~l~~~il~~l~~~~---~~~~~~~~l-~~~l 255 (581)
...++.|+|++|+||||++..++......+ ..+.++.. +.+... +-+...+...+... ....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 457999999999999999999887332211 12334333 222221 12233333333211 111222222 2344
Q ss_pred HHHhcCcceEEEEeccc
Q 043779 256 KDMLDGKRYLLVLDDVW 272 (581)
Q Consensus 256 ~~~l~~k~~LlVlDdv~ 272 (581)
...+..+.-++|+|-..
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 44444555688889764
No 161
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.87 E-value=0.016 Score=52.58 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|+|++|+||||+++.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999987
No 162
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.87 E-value=0.014 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999986
No 163
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.85 E-value=0.016 Score=52.67 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|.|++|+||||+++.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999999999986
No 164
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.84 E-value=0.013 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|.|++|+||||+++.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 165
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.83 E-value=0.014 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=19.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-.+++|+|++|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 35899999999999999997543
No 166
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=94.82 E-value=0.045 Score=47.88 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=47.3
Q ss_pred CceeEEEEeeCCCCCc-ccccccCCCcccEeeecC-----------------CccccccCC--CCCCc----ccCCcccc
Q 043779 513 RQTRHVTFTLSKDSFT-IPHALYRVEFSRTLLIQP-----------------TYPIILTNS--GECPS----DISKFHRL 568 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~-~~~~~~~~~~lrtl~~~~-----------------LrvL~l~~~--~~lp~----~i~~l~~L 568 (581)
...+++.+ .++.... .+..+..+++|++|.+.+ |+.|+++++ ..+|. .++++.+|
T Consensus 71 ~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 71 PKLKKLEL-SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp SSCCEEEE-ESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCEEEC-cCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 56778888 4444332 334444578888886543 788888765 46666 78899999
Q ss_pred ceEeeCCCCcccC
Q 043779 569 RALEFIDPRLTKF 581 (581)
Q Consensus 569 ryL~l~~~~i~~l 581 (581)
++|+++++.+.++
T Consensus 150 ~~L~l~~n~~~~~ 162 (168)
T 2ell_A 150 TYLDGYDREDQEA 162 (168)
T ss_dssp CEETTEETTSCBC
T ss_pred cEecCCCCChhhc
Confidence 9999999887653
No 167
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.81 E-value=0.012 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.++|.|+|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 168
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.80 E-value=0.015 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 169
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.80 E-value=0.019 Score=52.51 Aligned_cols=24 Identities=38% Similarity=0.375 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|+|++|+||||+++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 170
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.78 E-value=0.015 Score=55.19 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|.|.|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 171
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.78 E-value=0.016 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 172
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.77 E-value=0.018 Score=52.79 Aligned_cols=24 Identities=38% Similarity=0.319 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999886
No 173
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.75 E-value=0.016 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 174
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.75 E-value=0.012 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|.|+|++|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 175
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.72 E-value=0.016 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...|.|+|++|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 176
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=94.71 E-value=0.025 Score=61.09 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=15.6
Q ss_pred CCCceeEEEEeeCCCCC-cccccccCCCcccEeeec
Q 043779 511 LSRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQ 545 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~ 545 (581)
.|..+++|.+ ..+... ..+..+.++++|++|-+.
T Consensus 50 lp~~~~~LdL-s~N~i~~l~~~~f~~l~~L~~L~Ls 84 (635)
T 4g8a_A 50 LPFSTKNLDL-SFNPLRHLGSYSFFSFPELQVLDLS 84 (635)
T ss_dssp SCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcCCCEEEe-eCCCCCCCCHHHHhCCCCCCEEECC
Confidence 3455666666 333222 122344555555555443
No 177
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.70 E-value=0.013 Score=52.68 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4788999999999999999986
No 178
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.69 E-value=0.3 Score=49.24 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=33.4
Q ss_pred ccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 158 EVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.++|....+.++.+.+..... ....+ .|.|.+|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~--~~~~v-li~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC--AECPV-LITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT--CCSCE-EEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC--CCCCe-EEecCCCcCHHHHHHHHHH
Confidence 467777777887777665332 23444 7999999999999999876
No 179
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.67 E-value=0.018 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|++|+||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 180
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.67 E-value=0.16 Score=51.78 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4689999999999999999888763
No 181
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.66 E-value=0.016 Score=52.68 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.|+|.|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999987
No 182
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=94.66 E-value=0.04 Score=50.87 Aligned_cols=65 Identities=8% Similarity=0.089 Sum_probs=37.7
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCc-ccCCccccceEe
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPS-DISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~-~i~~l~~LryL~ 572 (581)
...+.|.+ .++... ..+..+..+++|++|.+.+ |+.|+|++. +.+|. .++.+.+|++|+
T Consensus 80 ~~L~~L~L-s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 80 RSLNSLVL-YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SSCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEEC-CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 45666666 333322 1223345667777776543 677777653 44443 467777777777
Q ss_pred eCCCCc
Q 043779 573 FIDPRL 578 (581)
Q Consensus 573 l~~~~i 578 (581)
|++|.+
T Consensus 159 L~~N~~ 164 (220)
T 2v9t_B 159 LAQNPF 164 (220)
T ss_dssp CCSSCE
T ss_pred eCCCCc
Confidence 777765
No 183
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.65 E-value=0.013 Score=52.00 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 184
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.63 E-value=0.022 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|.|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 185
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.62 E-value=0.018 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 186
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.62 E-value=0.15 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++|.++|.+|+||||++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998864
No 187
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.62 E-value=0.027 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
....|.|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999986
No 188
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.61 E-value=0.019 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...++|.|.|+||+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999987
No 189
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.61 E-value=0.017 Score=52.58 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|+|+|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999986
No 190
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.60 E-value=0.048 Score=55.96 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-HhHHHHHHH
Q 043779 169 IVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN-VRRLMTDII 235 (581)
Q Consensus 169 l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~il 235 (581)
.++.|..-.. + ..++|+|.+|+|||||+..+....... .-...+++.+++... ..+++.++.
T Consensus 141 ~ID~L~pi~k---G-q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 141 VVDLLAPYIK---G-GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp HHHHHSCEET---T-CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHhhhcc---C-CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 4555544322 1 257799999999999999988743222 123455666666543 344544443
No 191
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.60 E-value=0.02 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...|.|.|++|+||||+++.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 192
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.59 E-value=0.019 Score=52.31 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|+|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 193
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=94.59 E-value=0.039 Score=49.63 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=17.6
Q ss_pred CccccccCC--C-CCCcccCCccccceEeeCCCCc
Q 043779 547 TYPIILTNS--G-ECPSDISKFHRLRALEFIDPRL 578 (581)
Q Consensus 547 LrvL~l~~~--~-~lp~~i~~l~~LryL~l~~~~i 578 (581)
|+.|+|++. . ..|..++++.+|++|+|++|.+
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 555555543 2 2255566666666666666654
No 194
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=94.58 E-value=0.05 Score=51.21 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=20.6
Q ss_pred CccccccCC--CCCCcc-cCCccccceEeeCCCCccc
Q 043779 547 TYPIILTNS--GECPSD-ISKFHRLRALEFIDPRLTK 580 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~-i~~l~~LryL~l~~~~i~~ 580 (581)
|+.|+|++. ..+|.. ++++.+|++|+|++|.|+.
T Consensus 109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 566666543 345444 4667777777777776654
No 195
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.55 E-value=0.026 Score=50.95 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 166 KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+..+..++... +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55666666532 23346889999999999999988873
No 196
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.55 E-value=0.013 Score=52.43 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 197
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=94.53 E-value=0.05 Score=50.18 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=35.9
Q ss_pred ceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCC-CcccCCccccceEee
Q 043779 514 QTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GEC-PSDISKFHRLRALEF 573 (581)
Q Consensus 514 ~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~l-p~~i~~l~~LryL~l 573 (581)
..+.|.+ .++... ..+..+..+++|++|.+.+ |+.|+|++. ..+ |..+++|.+|++|+|
T Consensus 58 ~L~~L~L-~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 58 QLRKINF-SNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCEEEC-CCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 4555555 332222 1223445566666665443 666666643 333 566777777777777
Q ss_pred CCCCccc
Q 043779 574 IDPRLTK 580 (581)
Q Consensus 574 ~~~~i~~ 580 (581)
++|.|+.
T Consensus 137 ~~N~l~~ 143 (220)
T 2v70_A 137 YDNQITT 143 (220)
T ss_dssp TTSCCCC
T ss_pred CCCcCCE
Confidence 7776653
No 198
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=94.53 E-value=0.04 Score=50.88 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=48.0
Q ss_pred CceeEEEEeeCCCC-CcccccccCCCcccEeeecC----------------CccccccCC--CCC-CcccCCccccceEe
Q 043779 513 RQTRHVTFTLSKDS-FTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GEC-PSDISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~-~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~l-p~~i~~l~~LryL~ 572 (581)
...+.|.+ .++.. ...+..+..+++|++|.+.+ |+.|+|++. +.+ |..+++|.+|++|+
T Consensus 81 ~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 81 SGVNEILL-TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp TTCCEEEC-CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCEEEC-CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 56778888 44433 22344567788899887654 888888764 455 78889999999999
Q ss_pred eCCCCcc
Q 043779 573 FIDPRLT 579 (581)
Q Consensus 573 l~~~~i~ 579 (581)
|++|.+.
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 9998864
No 199
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.52 E-value=0.017 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.458 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 200
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.51 E-value=0.018 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 201
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.49 E-value=0.021 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 202
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.48 E-value=0.021 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999986
No 203
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.46 E-value=0.016 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
++++|+|++|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4788999999999999999876
No 204
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=94.46 E-value=0.031 Score=47.79 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=35.9
Q ss_pred CceeEEEEeeCCCCC--cccccccCCCcccEeeecC--------------CccccccCC--CC-CCcccCCccccceEee
Q 043779 513 RQTRHVTFTLSKDSF--TIPHALYRVEFSRTLLIQP--------------TYPIILTNS--GE-CPSDISKFHRLRALEF 573 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~--~~~~~~~~~~~lrtl~~~~--------------LrvL~l~~~--~~-lp~~i~~l~~LryL~l 573 (581)
...+++.+ .++... ..+..+..+++|++|.+.+ |++|+|+++ .. +|..++++.+|++|+|
T Consensus 17 ~~l~~L~l-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVL-DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEEC-TTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEc-cCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45556665 333222 1233345566666665433 666666654 23 5555566666666666
Q ss_pred CCCCccc
Q 043779 574 IDPRLTK 580 (581)
Q Consensus 574 ~~~~i~~ 580 (581)
++|.|+.
T Consensus 96 s~N~i~~ 102 (149)
T 2je0_A 96 SGNKIKD 102 (149)
T ss_dssp TTSCCCS
T ss_pred CCCcCCC
Confidence 6666543
No 205
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=94.45 E-value=0.053 Score=53.49 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=37.4
Q ss_pred ceeEEEEeeCCCCCcccccccCCCcccEeeecC----------------CccccccCC---CCCCcccCCccccceEeeC
Q 043779 514 QTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP----------------TYPIILTNS---GECPSDISKFHRLRALEFI 574 (581)
Q Consensus 514 ~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~---~~lp~~i~~l~~LryL~l~ 574 (581)
..+++.+ .++.....+..+..+++|++|.+.+ |+.|+|+++ ..+|..+++|.+|++|+|+
T Consensus 207 ~L~~L~L-~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 207 NLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp TCCEEEE-ESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCEEEc-cCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 4555666 3333222233445566666665443 666677664 3567777777777777777
Q ss_pred CCCc
Q 043779 575 DPRL 578 (581)
Q Consensus 575 ~~~i 578 (581)
+|++
T Consensus 286 ~n~~ 289 (328)
T 4fcg_A 286 GCVN 289 (328)
T ss_dssp TCTT
T ss_pred CCCc
Confidence 7664
No 206
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=94.44 E-value=0.051 Score=49.06 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=16.6
Q ss_pred CccccccCCC---CCCcccCCccccceEeeCCCCcc
Q 043779 547 TYPIILTNSG---ECPSDISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 547 LrvL~l~~~~---~lp~~i~~l~~LryL~l~~~~i~ 579 (581)
|+.|+++++. .+| .++++.+|++|+|++|.|+
T Consensus 138 L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 138 VNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred CCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 5555555432 233 4555555555555555554
No 207
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.43 E-value=0.021 Score=50.20 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+++.|+|.+|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999873
No 208
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.41 E-value=0.13 Score=52.94 Aligned_cols=65 Identities=25% Similarity=0.177 Sum_probs=44.1
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-HhHHHHHHHHh
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN-VRRLMTDIITS 237 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~il~~ 237 (581)
++++.|..-.. -.-++|.|.+|+|||+|+.++.+.. .+.+-+.++++-+++... ..++..++...
T Consensus 154 rvID~l~pigk----Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPYRR----GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCCCT----TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeeccccc----CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 45666654432 2357799999999999999998732 122346778888887765 45666666653
No 209
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.39 E-value=0.016 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999986
No 210
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=94.39 E-value=0.048 Score=49.23 Aligned_cols=66 Identities=9% Similarity=0.098 Sum_probs=44.7
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC----------------CccccccCCC---CCCcccCCccccceEee
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP----------------TYPIILTNSG---ECPSDISKFHRLRALEF 573 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~~---~lp~~i~~l~~LryL~l 573 (581)
...+.+.+ .++... ....+..+++|++|.+.+ |++|+|+++. ..|..++++.+|++|+|
T Consensus 66 ~~L~~L~l-~~n~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTI-NNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEE-ESCCCS-CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEc-cCCCCC-cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 46777888 444332 233566778888877654 7777777652 35777888888888888
Q ss_pred CCCC-ccc
Q 043779 574 IDPR-LTK 580 (581)
Q Consensus 574 ~~~~-i~~ 580 (581)
++|. |+.
T Consensus 144 ~~n~~i~~ 151 (197)
T 4ezg_A 144 SYNGAITD 151 (197)
T ss_dssp CSCTBCCC
T ss_pred cCCCCccc
Confidence 8887 654
No 211
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.39 E-value=0.026 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468899999999999999999873
No 212
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.37 E-value=0.021 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|+|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 213
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.37 E-value=0.021 Score=51.60 Aligned_cols=24 Identities=13% Similarity=0.461 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..++++|+|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346888999999999999999986
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.35 E-value=0.024 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|.|.|++|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346888999999999999999986
No 215
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=94.34 E-value=0.038 Score=54.50 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=45.4
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC---------------CccccccCC---CCCCcccCC---------c
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP---------------TYPIILTNS---GECPSDISK---------F 565 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~---------------LrvL~l~~~---~~lp~~i~~---------l 565 (581)
...+++.+ .++.....+..+.++++|++|.+.+ |++|+|+++ ..+|..+++ +
T Consensus 104 ~~L~~L~L-~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 104 SHLQHMTI-DAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TTCSEEEE-ESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCEEEC-CCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 46778888 4444333455567788888877654 777777764 456776654 8
Q ss_pred cccceEeeCCCCccc
Q 043779 566 HRLRALEFIDPRLTK 580 (581)
Q Consensus 566 ~~LryL~l~~~~i~~ 580 (581)
.+|++|+|++|.|+.
T Consensus 183 ~~L~~L~L~~n~l~~ 197 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRS 197 (328)
T ss_dssp TTCCEEEEEEECCCC
T ss_pred CCCCEEECcCCCcCc
Confidence 888888888877754
No 216
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.32 E-value=0.039 Score=50.98 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678889999999999999999874
No 217
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=94.32 E-value=0.039 Score=58.60 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=41.4
Q ss_pred CCceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCcc-cCCccccceE
Q 043779 512 SRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSD-ISKFHRLRAL 571 (581)
Q Consensus 512 ~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~-i~~l~~LryL 571 (581)
+..++++.+ .++... ..+..+.++++|++|.+.+ |++|+|++. ..+|.. +++|.+|+||
T Consensus 25 ~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 25 TAAMKSLDL-SFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CTTCCEEEC-CSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCccEEEC-cCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 356777777 333322 1234556677777776543 777777754 345544 7777777777
Q ss_pred eeCCCCcc
Q 043779 572 EFIDPRLT 579 (581)
Q Consensus 572 ~l~~~~i~ 579 (581)
+|++|.++
T Consensus 104 ~Ls~n~l~ 111 (549)
T 2z81_A 104 NLMGNPYQ 111 (549)
T ss_dssp ECTTCCCS
T ss_pred ECCCCccc
Confidence 77777665
No 218
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.30 E-value=0.027 Score=50.78 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
....+|+|+|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 219
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.29 E-value=0.044 Score=54.05 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=30.6
Q ss_pred cchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 161 GREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 161 GR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+-+.-.+++++.+..... .+....|.|+|++|+||||+++.++.
T Consensus 3 ~~~~L~~~il~~l~~~i~-~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIE-DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CHHHHHHHHHHHHHHTTT-TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc-cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 334455666666643222 13456788999999999999998877
No 220
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.29 E-value=0.014 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=16.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 221
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.26 E-value=0.022 Score=49.89 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 222
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.25 E-value=0.022 Score=51.17 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|+|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 223
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.25 E-value=0.027 Score=62.23 Aligned_cols=68 Identities=15% Similarity=0.316 Sum_probs=50.7
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC---------------CccccccCC--CCCCcccCCccccceEeeCC
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP---------------TYPIILTNS--GECPSDISKFHRLRALEFID 575 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~---------------LrvL~l~~~--~~lp~~i~~l~~LryL~l~~ 575 (581)
...+.|.+ .++.....+.....+++|++|.+.+ |++|||++. +.+|..|++|.+|+||+|++
T Consensus 224 ~~L~~L~L-s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 224 QLWHALDL-SNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCCEEEC-TTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred CCCcEEEC-CCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence 45677777 4444332344455788888887654 899999864 68899999999999999999
Q ss_pred CCcccC
Q 043779 576 PRLTKF 581 (581)
Q Consensus 576 ~~i~~l 581 (581)
|.|+.|
T Consensus 303 N~l~~l 308 (727)
T 4b8c_D 303 NMVTTL 308 (727)
T ss_dssp SCCCCC
T ss_pred CCCCcc
Confidence 988754
No 224
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=94.25 E-value=0.056 Score=59.15 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=43.8
Q ss_pred CCCceeEEEEeeCCCC-CcccccccCCCcccEeeecC----------------CccccccCC--CCCCc-ccCCccccce
Q 043779 511 LSRQTRHVTFTLSKDS-FTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPS-DISKFHRLRA 570 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~-~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~-~i~~l~~Lry 570 (581)
.+..++++.+ .++.. ...+..+.++++|++|-+.+ |++|+|+++ ..+|+ .++++.+|+|
T Consensus 23 ~~~~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 23 LPTNITVLNL-THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp SCTTCSEEEC-CSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred cCCCCcEEEC-CCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 4567788888 44332 22334466777888777653 777777754 45655 4777777777
Q ss_pred EeeCCCCccc
Q 043779 571 LEFIDPRLTK 580 (581)
Q Consensus 571 L~l~~~~i~~ 580 (581)
|+|++|.|+.
T Consensus 102 L~L~~n~l~~ 111 (680)
T 1ziw_A 102 LHLMSNSIQK 111 (680)
T ss_dssp EECCSSCCCC
T ss_pred EECCCCccCc
Confidence 7777776653
No 225
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=94.24 E-value=0.04 Score=54.85 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=34.6
Q ss_pred CceeEEEEeeCCCCCc-ccccccCCCcccEeeecC----------------CccccccCC--CCCCcc-cCCccccceEe
Q 043779 513 RQTRHVTFTLSKDSFT-IPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSD-ISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~-~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~-i~~l~~LryL~ 572 (581)
...+++.+ .++.... .+..+.++++|++|.+.+ |+.|+|++. +.+|.. ++++.+|++|+
T Consensus 52 ~~L~~L~l-~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEEC-CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 45666666 3332221 122345566666655443 556666543 345544 56666666666
Q ss_pred eCCCCccc
Q 043779 573 FIDPRLTK 580 (581)
Q Consensus 573 l~~~~i~~ 580 (581)
|++|.|+.
T Consensus 131 L~~n~l~~ 138 (353)
T 2z80_A 131 LLGNPYKT 138 (353)
T ss_dssp CTTCCCSS
T ss_pred CCCCCCcc
Confidence 66665543
No 226
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=94.22 E-value=0.039 Score=57.01 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=44.4
Q ss_pred CCCceeEEEEeeCCCCC-cccccccCCCcccEeeecC-----------------CccccccCC--CC-CCcccCCccccc
Q 043779 511 LSRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP-----------------TYPIILTNS--GE-CPSDISKFHRLR 569 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~-----------------LrvL~l~~~--~~-lp~~i~~l~~Lr 569 (581)
.+..++++.+ .++... ..+..+.++++|++|-+.+ |++|+|+++ .. .|..+++|.+|+
T Consensus 28 l~~~l~~L~L-s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 28 LPAHVNYVDL-SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CCTTCCEEEC-CSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCCccCEEEe-cCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 4467778877 443332 2345566777777776543 777777765 23 367778888888
Q ss_pred eEeeCCCCcc
Q 043779 570 ALEFIDPRLT 579 (581)
Q Consensus 570 yL~l~~~~i~ 579 (581)
+|+|++|.++
T Consensus 107 ~L~L~~n~l~ 116 (455)
T 3v47_A 107 VLTLTQCNLD 116 (455)
T ss_dssp EEECTTSCCB
T ss_pred EEeCCCCCCC
Confidence 8888887765
No 227
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.20 E-value=0.023 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 228
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.20 E-value=0.21 Score=50.91 Aligned_cols=105 Identities=17% Similarity=0.084 Sum_probs=55.8
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCC---CCCcCCHHHHHHHHH
Q 043779 180 SDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN---VSEAWNLDLLQRRLK 256 (581)
Q Consensus 180 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~---~~~~~~~~~l~~~l~ 256 (581)
....++..|.|.+|.||||+.+..++. ..... ++.. .+...++.+.+... .............+.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lV--lTpT---~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLI--LVPG---RQAAEMIRRRANASGIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEE--EESC---HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHH
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEE--EeCC---HHHHHHHHHHhhhcCccccccceEEEeHHhhc
Confidence 357789999999999999999988752 11122 2211 12223333333211 111122222233333
Q ss_pred HHhcCc---ceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC
Q 043779 257 DMLDGK---RYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR 300 (581)
Q Consensus 257 ~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 300 (581)
.....+ --++|+|++.-.+...+..+....+. .++|+.--
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~----~~vilvGD 268 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLC----DIAYVYGD 268 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTC----SEEEEEEC
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCC----CEEEEecC
Confidence 221111 34899999976666666665544322 56776654
No 229
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.17 E-value=0.026 Score=51.74 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|.|.|++|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 230
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.16 E-value=0.024 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+|+|.|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 231
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.15 E-value=0.027 Score=55.11 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=21.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
++.+||+|.|-|||||||.+-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3678999999999999999877765
No 232
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.14 E-value=0.029 Score=54.89 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+++|.|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999999886
No 233
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.10 E-value=0.026 Score=51.57 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.10 E-value=0.18 Score=51.50 Aligned_cols=25 Identities=36% Similarity=0.212 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+|.++|++|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988764
No 235
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.07 E-value=0.031 Score=52.63 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 236
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=94.06 E-value=0.059 Score=48.43 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=45.4
Q ss_pred CCceeEEEEeeCCCCCcccc--cccCCCcccEeeecC----------------CccccccCC--CCC-CcccCCccccce
Q 043779 512 SRQTRHVTFTLSKDSFTIPH--ALYRVEFSRTLLIQP----------------TYPIILTNS--GEC-PSDISKFHRLRA 570 (581)
Q Consensus 512 ~~~~r~l~~~~~~~~~~~~~--~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~l-p~~i~~l~~Lry 570 (581)
+..++.+.+ .++.....+. .+..+++|++|.+.+ |+.|+|++. +.+ |..+++|.+|++
T Consensus 28 ~~~l~~L~l-~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 28 PLHTTELLL-NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp CTTCSEEEC-CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred CCCCCEEEC-CCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 346777777 4443322221 256777788777654 778888764 444 455889999999
Q ss_pred EeeCCCCccc
Q 043779 571 LEFIDPRLTK 580 (581)
Q Consensus 571 L~l~~~~i~~ 580 (581)
|+|++|.|+.
T Consensus 107 L~L~~N~l~~ 116 (192)
T 1w8a_A 107 LNLYDNQISC 116 (192)
T ss_dssp EECCSSCCCE
T ss_pred EECCCCcCCe
Confidence 9999998864
No 237
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=94.06 E-value=0.042 Score=48.58 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=43.3
Q ss_pred ceeEEEEeeCCCCCcccccccCCCcccEeeecC----------------CccccccCC--CCCCc--ccCCccccceEee
Q 043779 514 QTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPS--DISKFHRLRALEF 573 (581)
Q Consensus 514 ~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~--~i~~l~~LryL~l 573 (581)
..+.+.+ .++.... ...+..+++|++|.+.+ |+.|+|++. ..+|. .++++.+|++|+|
T Consensus 43 ~L~~L~L-s~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDF-SDNEIRK-LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEEC-CSSCCCE-ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEEC-CCCCCCc-ccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 6677777 4433321 24456677777776543 777777764 46676 7788888888888
Q ss_pred CCCCccc
Q 043779 574 IDPRLTK 580 (581)
Q Consensus 574 ~~~~i~~ 580 (581)
++|.|..
T Consensus 121 ~~N~i~~ 127 (176)
T 1a9n_A 121 LRNPVTN 127 (176)
T ss_dssp CSSGGGG
T ss_pred cCCCCCC
Confidence 8887754
No 238
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=94.04 E-value=0.04 Score=59.36 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCCCceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CC-CCcccCCccccc
Q 043779 510 HLSRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GE-CPSDISKFHRLR 569 (581)
Q Consensus 510 ~~~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~-lp~~i~~l~~Lr 569 (581)
..+..++++.+ .++... ..+..+.++++|++|.+.+ |+.|+|++. .. .|..++++.+|+
T Consensus 30 ~l~~~l~~L~L-s~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 30 TLPNSTECLEF-SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp TSCTTCCEEEC-TTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCCCcCcEEEc-cCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 34567777777 443332 2344566777777776554 677777654 22 356677777777
Q ss_pred eEeeCCCCccc
Q 043779 570 ALEFIDPRLTK 580 (581)
Q Consensus 570 yL~l~~~~i~~ 580 (581)
+|+|++|.|+.
T Consensus 109 ~L~L~~n~i~~ 119 (606)
T 3t6q_A 109 HLFFIQTGISS 119 (606)
T ss_dssp EEECTTSCCSC
T ss_pred EeeccccCccc
Confidence 77777766654
No 239
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.04 E-value=0.033 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 240
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.04 E-value=0.017 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+|+|.|++|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999998763
No 241
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=94.03 E-value=0.065 Score=52.71 Aligned_cols=68 Identities=7% Similarity=0.071 Sum_probs=47.0
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCcccCCccccceEee
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSDISKFHRLRALEF 573 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~i~~l~~LryL~l 573 (581)
...+++.+ .++... ..+..+..+++|++|.+.+ |+.|+|+++ ..+|..++++.+|++|+|
T Consensus 192 ~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHL-DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEEC-TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred ccCCEEEC-CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence 45566666 333222 1234456667777766543 788888865 688999999999999999
Q ss_pred CCCCcccC
Q 043779 574 IDPRLTKF 581 (581)
Q Consensus 574 ~~~~i~~l 581 (581)
++|.|+.+
T Consensus 271 ~~N~i~~~ 278 (330)
T 1xku_A 271 HNNNISAI 278 (330)
T ss_dssp CSSCCCCC
T ss_pred CCCcCCcc
Confidence 99998753
No 242
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.01 E-value=0.026 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 243
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.98 E-value=0.027 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|+|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 244
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.95 E-value=0.21 Score=50.04 Aligned_cols=132 Identities=20% Similarity=0.181 Sum_probs=67.6
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHH
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIIT 236 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~ 236 (581)
..++|....+.++...+..... .... +.|.|.+|+||+++|+.+.......+ .-+-+++..- ....+...++.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~--~~~~-vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~-~~~~~~~~lfg 201 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK--SKAP-VLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASI-PQELAESELFG 201 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT--SCSC-EEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSS-CTTTHHHHHHE
T ss_pred ccccccchHHHHHHhhhhhhhc--cchh-heEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccC-ChHHHHHHhcC
Confidence 3577887777777666544322 1233 55999999999999999876322111 1122233322 11222222222
Q ss_pred hhCCCCCCcCCHHHHHHHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCC------C-----CCcEEEEecC
Q 043779 237 SSGGNVSEAWNLDLLQRRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCG------S-----KGSSVVVTTR 300 (581)
Q Consensus 237 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iivTtr 300 (581)
.-.+...+..... ...+ +.-. .-.|+||++..........+...+..+ + ...+||.+|.
T Consensus 202 ~~~g~~tga~~~~--~g~~-~~a~--~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~ 271 (368)
T 3dzd_A 202 HEKGAFTGALTRK--KGKL-ELAD--QGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATN 271 (368)
T ss_dssp ECSCSSSSCCCCE--ECHH-HHTT--TSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEES
T ss_pred ccccccCCccccc--CChH-hhcC--CCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecC
Confidence 2112111111000 0001 1111 235899999888777777777666422 1 1346777776
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.93 E-value=0.023 Score=52.45 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 246
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.93 E-value=0.039 Score=50.74 Aligned_cols=39 Identities=28% Similarity=0.244 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 163 EEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+..+.+...+.. ....+|.|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~~-----~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALRE-----SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHH-----HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc-----cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444555554432 25678999999999999999998874
No 247
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.92 E-value=0.097 Score=63.00 Aligned_cols=84 Identities=19% Similarity=0.107 Sum_probs=53.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCC-----CCcCCHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNV-----SEAWNLDLLQRRLK 256 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~-----~~~~~~~~l~~~l~ 256 (581)
..+.+.|+|++|+|||+||.++..... .+=..++|+.+...++... +..++... ....+.++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 456888999999999999999987422 2223466777776666554 33333111 12234455556565
Q ss_pred HHhc-CcceEEEEeccc
Q 043779 257 DMLD-GKRYLLVLDDVW 272 (581)
Q Consensus 257 ~~l~-~k~~LlVlDdv~ 272 (581)
...+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 567899999993
No 248
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=93.92 E-value=0.071 Score=50.15 Aligned_cols=32 Identities=9% Similarity=0.354 Sum_probs=17.6
Q ss_pred CccccccCC--CCCC-cccCCccccceEeeCCCCc
Q 043779 547 TYPIILTNS--GECP-SDISKFHRLRALEFIDPRL 578 (581)
Q Consensus 547 LrvL~l~~~--~~lp-~~i~~l~~LryL~l~~~~i 578 (581)
|++|+|++. ..+| ..+.++.+|++|+|++|.+
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 555555543 3333 3455666666666666654
No 249
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.92 E-value=0.028 Score=51.64 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999976
No 250
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.89 E-value=0.14 Score=54.68 Aligned_cols=104 Identities=18% Similarity=0.146 Sum_probs=53.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCCCcCCHHHHHHHHH-HHh---
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVSEAWNLDLLQRRLK-DML--- 259 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~-~~l--- 259 (581)
+++.|.|.+|+||||++..+.......+ ..+.+..........+.. .++.. ..+...+..... .+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~~Aa~~L~e----~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTGKAARRLGE----VTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHH----HHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcHHHHHHhHh----hhccc---HHHHHHHHcCCcchhhhhh
Confidence 4788999999999999999886432221 233333322211222211 11110 000000000000 000
Q ss_pred --cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC
Q 043779 260 --DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR 300 (581)
Q Consensus 260 --~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 300 (581)
..+.-+||+|++...+...+..+...++ .+.++|+.--
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0123499999998777777777777665 4567777644
No 251
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=93.89 E-value=0.083 Score=48.01 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=42.3
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCcc-cCCccccceEe
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSD-ISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~-i~~l~~LryL~ 572 (581)
...+.+.+ .++... ..+..+..+++|++|.+.+ |+.|+|++. ..+|.. ++++.+|++|+
T Consensus 76 ~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 76 TSLTYLNL-STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCcCEEEC-CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 46677777 333322 2233356677788776543 777787753 455554 67888888888
Q ss_pred eCCCCcc
Q 043779 573 FIDPRLT 579 (581)
Q Consensus 573 l~~~~i~ 579 (581)
|++|.+.
T Consensus 155 l~~N~~~ 161 (208)
T 2o6s_A 155 LHDNPWD 161 (208)
T ss_dssp CCSCCBC
T ss_pred ecCCCee
Confidence 8887653
No 252
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.89 E-value=0.029 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 253
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.88 E-value=0.23 Score=50.57 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++.|+|++|+||||++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468889999999999999998863
No 254
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=93.88 E-value=0.058 Score=55.80 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=45.4
Q ss_pred CCCceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCcc-cCCccccce
Q 043779 511 LSRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSD-ISKFHRLRA 570 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~-i~~l~~Lry 570 (581)
.+..++.|.+ .++... ..+..+.++++|++|.+.+ |+.|+|++. ..+|.. +++|.+|++
T Consensus 73 ~~~~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 73 IPSNTRYLNL-MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCTTCSEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCCccEEEC-cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 4467778877 444332 2345566778888777653 777777754 455544 777888888
Q ss_pred EeeCCCCccc
Q 043779 571 LEFIDPRLTK 580 (581)
Q Consensus 571 L~l~~~~i~~ 580 (581)
|+|++|.|+.
T Consensus 152 L~L~~N~l~~ 161 (452)
T 3zyi_A 152 LWLRNNPIES 161 (452)
T ss_dssp EECCSCCCCE
T ss_pred EECCCCCcce
Confidence 8888887754
No 255
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.87 E-value=0.33 Score=50.59 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=21.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...++|.|+|.+|+||||++..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998853
No 256
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.86 E-value=0.06 Score=57.51 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=47.9
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC--------------CccccccCC--CCC--CcccCCccccceEeeC
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP--------------TYPIILTNS--GEC--PSDISKFHRLRALEFI 574 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~--------------LrvL~l~~~--~~l--p~~i~~l~~LryL~l~ 574 (581)
...+.|.+ .++.....|..+..+++|++|.+.+ |+.|+|++. +.+ |..+++|.+|++|+|+
T Consensus 463 ~~L~~L~L-s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 463 LLVTHLDL-SHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp TTCCEEEC-CSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred ccCcEeec-CcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 35666666 4433333455566777777776543 788888864 556 8999999999999999
Q ss_pred CCCccc
Q 043779 575 DPRLTK 580 (581)
Q Consensus 575 ~~~i~~ 580 (581)
+|.++.
T Consensus 542 ~N~l~~ 547 (567)
T 1dce_A 542 GNSLCQ 547 (567)
T ss_dssp TSGGGG
T ss_pred CCcCCC
Confidence 998865
No 257
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=93.85 E-value=0.056 Score=47.75 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=17.5
Q ss_pred CccccccCC--CCCCcc----cCCccccceEeeCCCCc
Q 043779 547 TYPIILTNS--GECPSD----ISKFHRLRALEFIDPRL 578 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~----i~~l~~LryL~l~~~~i 578 (581)
|+.|++++. ..+|.. ++++.+|++||++++.+
T Consensus 115 L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 115 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555543 344553 56666666666665554
No 258
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=93.85 E-value=0.098 Score=49.80 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=21.5
Q ss_pred CccccccCC--CCCC-cccCCccccceEeeCCCCccc
Q 043779 547 TYPIILTNS--GECP-SDISKFHRLRALEFIDPRLTK 580 (581)
Q Consensus 547 LrvL~l~~~--~~lp-~~i~~l~~LryL~l~~~~i~~ 580 (581)
|+.|+|++. ..+| ..++++.+|++|+|++|.|+.
T Consensus 111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 666666643 3343 346777777777777777654
No 259
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.85 E-value=0.026 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 260
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.84 E-value=0.031 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|+|+|++|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.84 E-value=0.036 Score=48.20 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-.+++|.|+.|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 262
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.80 E-value=0.03 Score=51.43 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999976
No 263
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.79 E-value=0.031 Score=50.70 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|+|.|++|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 264
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.78 E-value=0.2 Score=51.70 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=35.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhh
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSS 238 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l 238 (581)
-.++.|.|.+|+||||||..++.+...... ..++|++.. .+..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHHH
Confidence 358889999999999999998875332211 235565553 45566766665443
No 265
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.78 E-value=0.27 Score=48.87 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=33.6
Q ss_pred HHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc-CCcCceeEEEecCC
Q 043779 167 EKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK-RHFEFRIWVFVFED 224 (581)
Q Consensus 167 ~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~ 224 (581)
-++++.+..-.. + .-++|+|.+|+|||+|+.++.+..... ..+. ++++-+++.
T Consensus 163 iraID~l~Pigr---G-QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGK---G-QRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBT---T-CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccccC---C-ceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 366777765432 2 356799999999999999988732211 1222 245666554
No 266
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=93.78 E-value=0.058 Score=57.46 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=17.2
Q ss_pred CccccccCC--CCCCc-ccCCccccceEeeCCCCcc
Q 043779 547 TYPIILTNS--GECPS-DISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 547 LrvL~l~~~--~~lp~-~i~~l~~LryL~l~~~~i~ 579 (581)
|+.|++++. ..+|. .+++|.+|++|+|++|.|+
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred cccccccccccccCCCccccccccccEEecCCCccc
Confidence 455555432 33333 4566666666666666554
No 267
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.77 E-value=0.024 Score=50.14 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|.+|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 268
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.71 E-value=0.049 Score=55.67 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHHhcC---------cCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 157 PEVYGREEDKEKIVERLVKD---------VAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..++|.++.++.+...+... .......+-+.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45788888888887666321 00011234578999999999999999987
No 269
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.70 E-value=0.35 Score=51.75 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5889999999999999999875
No 270
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.70 E-value=0.028 Score=51.79 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 271
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.70 E-value=0.19 Score=52.67 Aligned_cols=54 Identities=9% Similarity=-0.050 Sum_probs=36.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhh
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSS 238 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l 238 (581)
.-.++.|.|.+|+||||||.+++.+.... +=..++|++. ..+..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~--E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML--EESVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec--cCCHHHHHHHHHHHH
Confidence 34588899999999999999998743222 1124566655 445667777665544
No 272
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=93.68 E-value=0.078 Score=50.90 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=17.0
Q ss_pred CccccccCC--CCC-CcccCCccccceEeeCCCCcc
Q 043779 547 TYPIILTNS--GEC-PSDISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 547 LrvL~l~~~--~~l-p~~i~~l~~LryL~l~~~~i~ 579 (581)
|+.|++++. ..+ |..++++.+|++|+|++|.|+
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc
Confidence 445555443 222 444555666666666665554
No 273
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.65 E-value=0.039 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|.|.|++|+||||+++.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999886
No 274
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.64 E-value=0.3 Score=49.97 Aligned_cols=65 Identities=26% Similarity=0.278 Sum_probs=43.6
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-HhHHHHHHHHh
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN-VRRLMTDIITS 237 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~il~~ 237 (581)
++++.|..-.. -.-++|.|.+|+|||+|+.++.+.. .+.+-+.++++-+++... +.++..++...
T Consensus 142 r~ID~l~pigk----GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAK----GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEET----TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccccc----CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 56677765432 2367899999999999999998732 122335567788877654 45666666553
No 275
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.63 E-value=0.039 Score=51.06 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.-.+++|+|++|+|||||++.++.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
No 276
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.63 E-value=0.041 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|+|.|++|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999874
No 277
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.57 E-value=0.039 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+++|+|++|+|||||+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999999999886
No 278
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.49 E-value=0.41 Score=49.16 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=35.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhh
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSS 238 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l 238 (581)
.-.++.|.|.+|+||||||..++.+....+ ..++|++ -..+..++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fS--lEms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHS--LEMGKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEEC--SSSCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEE--CCCCHHHHHHHHHHHH
Confidence 345888999999999999999887543321 2344544 4455566666665543
No 279
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=93.47 E-value=0.075 Score=51.93 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=16.5
Q ss_pred CccccccCC---CCCCcccCCccccceEeeCCCCcc
Q 043779 547 TYPIILTNS---GECPSDISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 547 LrvL~l~~~---~~lp~~i~~l~~LryL~l~~~~i~ 579 (581)
|+.|+|++. ..+|..+++|.+|++|+|++|.|+
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc
Confidence 455555443 134555555555555555555543
No 280
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=93.44 E-value=0.048 Score=53.01 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=11.2
Q ss_pred ccCCccccceEeeCCCCcc
Q 043779 561 DISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 561 ~i~~l~~LryL~l~~~~i~ 579 (581)
.++++.+|++|+|++|.+.
T Consensus 121 ~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp TTTTCTTCCEEECTTSCCE
T ss_pred hhhhccCCCEEECCCCcCC
Confidence 4556666666666665543
No 281
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=93.44 E-value=0.1 Score=49.82 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=38.7
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCcc-cCCccccceEe
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSD-ISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~-i~~l~~LryL~ 572 (581)
...+.+.+ .++... ..+..+..+++|++|.+.+ |+.|+|+++ ..+|.. ++++.+|++|+
T Consensus 85 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 85 TNLTYLIL-TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp TTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEC-CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 45666666 333322 1223345667777766543 667777654 344443 57777777777
Q ss_pred eCCCCccc
Q 043779 573 FIDPRLTK 580 (581)
Q Consensus 573 l~~~~i~~ 580 (581)
|++|+|+.
T Consensus 164 l~~n~l~~ 171 (272)
T 3rfs_A 164 LSYNQLQS 171 (272)
T ss_dssp CCSSCCCC
T ss_pred CCCCCcCc
Confidence 77777654
No 282
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.43 E-value=0.2 Score=48.45 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+++|+|.+|+||||++..++.-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358889999999999999998874
No 283
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.42 E-value=0.039 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|++|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999998873
No 284
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.41 E-value=0.042 Score=48.66 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+++.|+|++|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998873
No 285
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.40 E-value=0.068 Score=56.51 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-.++.|.|++|+|||||++.++..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 286
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.39 E-value=0.47 Score=43.99 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=45.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC-ccccCCcC-ceeEEEecCCCcHhHHHHHHHHhhCCCCC---------------C--
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND-DRIKRHFE-FRIWVFVFEDFNVRRLMTDIITSSGGNVS---------------E-- 244 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~F~-~~~wv~v~~~~~~~~l~~~il~~l~~~~~---------------~-- 244 (581)
+.+.|.|+.|+||||+.....-+ ....+... ..+.+.........++...+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 37789999999999876655432 11122222 22322222222233444444444332210 0
Q ss_pred ---cCCHHHHHHHHHHHhcCcceEEEEecccc
Q 043779 245 ---AWNLDLLQRRLKDMLDGKRYLLVLDDVWN 273 (581)
Q Consensus 245 ---~~~~~~l~~~l~~~l~~k~~LlVlDdv~~ 273 (581)
..+...+...+...+.+ --+||+|+++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 12455565666554433 34899999975
No 287
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.38 E-value=0.31 Score=60.80 Aligned_cols=147 Identities=9% Similarity=-0.004 Sum_probs=0.0
Q ss_pred EEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCC-----------CCCcCCHHHHHHH
Q 043779 186 YPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN-----------VSEAWNLDLLQRR 254 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~-----------~~~~~~~~~l~~~ 254 (581)
+.++|++|+|||++|+.+.. ...+ .....++.+...+...+...+-..+... ..
T Consensus 1270 vLL~GPpGtGKT~la~~~l~--~~~~--~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~----------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR--NSSL--YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD----------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH--SCSS--CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------
T ss_pred EEEECCCCCCHHHHHHHHHh--cCCC--CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------
Q ss_pred HHHHhcCcceEEEEecccccchh------hHHHHhhhcCCCC------------CCcEEEEecCchh-------HHHhhC
Q 043779 255 LKDMLDGKRYLLVLDDVWNEDQE------KWDQLKCTLTCGS------------KGSSVVVTTRLAK-------VASIVG 309 (581)
Q Consensus 255 l~~~l~~k~~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~iivTtr~~~-------v~~~~~ 309 (581)
+++.++++||+.-...+ ..+.++..+..++ .+..+|.++.... -.....
T Consensus 1335 ------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR 1408 (2695)
T 4akg_A 1335 ------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR 1408 (2695)
T ss_dssp ------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT
T ss_pred ------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh
Q ss_pred CCCeeeCCCCChHhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHc
Q 043779 310 TLPVYRLSDLSEDDCWLLFKQRAFGNDTEPPMNILAIAKEIVKKC 354 (581)
Q Consensus 310 ~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~l~~~~~~I~~~~ 354 (581)
....+.+...+.++-..+|.....+.-. ..+++..++..|+..+
T Consensus 1409 rf~vi~i~~P~~~~l~~I~~~il~~~l~-~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1409 HAAILYLGYPSGKSLSQIYEIYYKAIFK-LVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp TEEEEECCCCTTTHHHHHHHHHHHHHTT-SSGGGGGGHHHHHHHH
T ss_pred eeeEEEeCCCCHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHH
No 288
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=93.36 E-value=0.057 Score=53.22 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=29.0
Q ss_pred CccccccCC--CCCCcccCCccccceEeeCCCCcccC
Q 043779 547 TYPIILTNS--GECPSDISKFHRLRALEFIDPRLTKF 581 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~~i~~l 581 (581)
|+.|+|++. ..+|..++++.+|++|+|++|.|+.+
T Consensus 243 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence 777888764 57899999999999999999988753
No 289
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.35 E-value=0.036 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6889999999999999998874
No 290
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.32 E-value=0.041 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|+|.|++|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 291
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=93.31 E-value=0.087 Score=54.24 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=44.6
Q ss_pred CCCceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCc-ccCCccccce
Q 043779 511 LSRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPS-DISKFHRLRA 570 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~-~i~~l~~Lry 570 (581)
.+...+.+.+ .++... ..+..+.++++|++|.+.+ |+.|+|++. +.+|. .++++.+|++
T Consensus 62 ~~~~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 62 ISTNTRLLNL-HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CCTTCSEEEC-CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCCCcEEEc-cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 4466777777 443332 2334566777777776543 777777754 45554 5778888888
Q ss_pred EeeCCCCccc
Q 043779 571 LEFIDPRLTK 580 (581)
Q Consensus 571 L~l~~~~i~~ 580 (581)
|+|++|.|+.
T Consensus 141 L~L~~N~i~~ 150 (440)
T 3zyj_A 141 LWLRNNPIES 150 (440)
T ss_dssp EECCSCCCCE
T ss_pred eeCCCCcccc
Confidence 8888887653
No 292
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.31 E-value=0.027 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=15.9
Q ss_pred EEEEEEecCCCcHHHHHHHHh-c
Q 043779 184 SIYPIVGMGGLGKTTLAQLVF-N 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~-~ 205 (581)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 293
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.28 E-value=0.051 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.291 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 294
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.25 E-value=0.085 Score=52.65 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 166 KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+.+.+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~---~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS---GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC---CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc---CCceEEEEECCCCCCHHHHHHHHHH
Confidence 344555554322 3667899999999999999999875
No 295
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=93.23 E-value=0.12 Score=49.13 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=47.8
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCcc-cCCccccceEe
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSD-ISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~-i~~l~~LryL~ 572 (581)
...+.|.+ .++... ..+..+..+++|++|.+.+ |+.|+|++. ..+|.. ++++.+|++|+
T Consensus 85 ~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 85 KNLETLWV-TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp TTCCEEEC-CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEC-CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 56777877 433322 2334456788888887653 888888865 566655 78999999999
Q ss_pred eCCCCccc
Q 043779 573 FIDPRLTK 580 (581)
Q Consensus 573 l~~~~i~~ 580 (581)
|++|.|+.
T Consensus 164 L~~n~l~~ 171 (270)
T 2o6q_A 164 LYNNQLKR 171 (270)
T ss_dssp CCSSCCSC
T ss_pred ecCCcCcE
Confidence 99998865
No 296
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=93.22 E-value=0.084 Score=54.92 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=33.6
Q ss_pred CCCceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCcc-cCCccccce
Q 043779 511 LSRQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSD-ISKFHRLRA 570 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~-i~~l~~Lry 570 (581)
.+..+++|.+ .++... ..+..+.++++|++|.+.+ |+.|+|++. ..+|.. ++++.+|++
T Consensus 30 ~~~~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 30 IPTETRLLDL-GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CCTTCSEEEC-CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCCcEEEC-CCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 3445666666 333222 1233445566666665432 555555542 344433 455555555
Q ss_pred EeeCCCCcc
Q 043779 571 LEFIDPRLT 579 (581)
Q Consensus 571 L~l~~~~i~ 579 (581)
|+|++|.|.
T Consensus 109 L~Ls~n~i~ 117 (477)
T 2id5_A 109 LDISENKIV 117 (477)
T ss_dssp EECTTSCCC
T ss_pred EECCCCccc
Confidence 555555543
No 297
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.21 E-value=0.044 Score=49.98 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+|.|.|+||+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999987
No 298
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.19 E-value=0.046 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4889999999999999999886
No 299
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.19 E-value=0.046 Score=53.77 Aligned_cols=22 Identities=36% Similarity=0.318 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|+|.|++|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 300
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.18 E-value=0.046 Score=50.17 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 301
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.15 E-value=0.045 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999886
No 302
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.14 E-value=0.045 Score=50.65 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 303
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.11 E-value=0.19 Score=51.98 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=32.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHH
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDII 235 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il 235 (581)
-.++.|.|.+|+|||||+..++........ ..++|++.. .+..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHH
Confidence 358889999999999999999875332211 245565543 34455555554
No 304
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.10 E-value=0.2 Score=48.46 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++.++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999988863
No 305
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.09 E-value=0.049 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999976
No 306
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=93.06 E-value=0.098 Score=52.27 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=43.1
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCccc----CCccccc
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSDI----SKFHRLR 569 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~i----~~l~~Lr 569 (581)
...++|.+ .++... ..+..+..+.+|++|.+.+ |+.|+|++. ..+|..+ +++.+|+
T Consensus 88 ~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 88 PNLRYLDL-SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp TTCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCEEEC-CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 45667777 333322 1233456677777776543 777788753 5677765 6788999
Q ss_pred eEeeCCCCcccC
Q 043779 570 ALEFIDPRLTKF 581 (581)
Q Consensus 570 yL~l~~~~i~~l 581 (581)
+|+|++|.|+.+
T Consensus 167 ~L~L~~N~l~~l 178 (361)
T 2xot_A 167 LLDLSSNKLKKL 178 (361)
T ss_dssp EEECCSSCCCCC
T ss_pred EEECCCCCCCcc
Confidence 999999888753
No 307
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.05 E-value=0.059 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 308
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.05 E-value=0.038 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|+|+|++|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999986
No 309
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.00 E-value=0.049 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 310
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=92.99 E-value=0.076 Score=51.92 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=47.7
Q ss_pred CceeEEEEeeCCCCC---cccccccCCCcccEeeec--C---------------CccccccCC--C-CCCcccCCccccc
Q 043779 513 RQTRHVTFTLSKDSF---TIPHALYRVEFSRTLLIQ--P---------------TYPIILTNS--G-ECPSDISKFHRLR 569 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~---~~~~~~~~~~~lrtl~~~--~---------------LrvL~l~~~--~-~lp~~i~~l~~Lr 569 (581)
..++++.+ .++... ..+..+.++++|++|.+. + |+.|+|++. . .+|..++++.+|+
T Consensus 50 ~~l~~L~L-~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDL-SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEE-ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEEC-CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 46777777 443332 245566777888877664 1 788888764 2 6799999999999
Q ss_pred eEeeCCCCcc
Q 043779 570 ALEFIDPRLT 579 (581)
Q Consensus 570 yL~l~~~~i~ 579 (581)
+|+|++|.|+
T Consensus 129 ~L~Ls~N~l~ 138 (313)
T 1ogq_A 129 TLDFSYNALS 138 (313)
T ss_dssp EEECCSSEEE
T ss_pred EEeCCCCccC
Confidence 9999999876
No 311
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.98 E-value=0.058 Score=52.46 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+++|+|+.|+||||+++.++.-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4469999999999999999998763
No 312
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.98 E-value=0.056 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35889999999999999999987
No 313
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.96 E-value=0.053 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...|.|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 314
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=92.93 E-value=0.08 Score=50.55 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=44.3
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CC--CCcccCCccccceE
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GE--CPSDISKFHRLRAL 571 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~--lp~~i~~l~~LryL 571 (581)
...+++.+ .++... ..+..+.++++|++|.+.+ |+.|++++. .. +|..++++.+|++|
T Consensus 76 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 76 SHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp TTCCEEEC-TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred cCCCEEEC-CCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 45666666 333322 1234456677777776542 777888764 33 68889999999999
Q ss_pred eeCCCCccc
Q 043779 572 EFIDPRLTK 580 (581)
Q Consensus 572 ~l~~~~i~~ 580 (581)
+|++|.|+.
T Consensus 155 ~Ls~N~l~~ 163 (276)
T 2z62_A 155 DLSSNKIQS 163 (276)
T ss_dssp ECCSSCCCE
T ss_pred ECCCCCCCc
Confidence 999988764
No 315
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.92 E-value=0.053 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+|.|+|++|+||||||..+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999999987
No 316
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=92.92 E-value=0.1 Score=49.83 Aligned_cols=34 Identities=9% Similarity=0.207 Sum_probs=18.9
Q ss_pred CccccccCC--CCCCc-ccCCccccceEeeCCCCccc
Q 043779 547 TYPIILTNS--GECPS-DISKFHRLRALEFIDPRLTK 580 (581)
Q Consensus 547 LrvL~l~~~--~~lp~-~i~~l~~LryL~l~~~~i~~ 580 (581)
|+.|++++. ..++. .++++.+|++|+|++|.|+.
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 555555443 23332 46666667777776666543
No 317
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=92.91 E-value=0.14 Score=46.08 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=45.5
Q ss_pred CceeEEEEeeCCCC-CcccccccCCCcccEeeecC----------------CccccccCC--CCCCc-ccCCccccceEe
Q 043779 513 RQTRHVTFTLSKDS-FTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPS-DISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~-~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~-~i~~l~~LryL~ 572 (581)
...+.|.+ .++.. ...+..+..+.+|++|.+.+ |++|+|++. ..+|. .+.+|.+|++|+
T Consensus 54 ~~L~~L~L-s~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 54 KHLTLIDL-SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp TTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred cCCCEEEC-CCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 45666777 33332 22334566777788776553 788888863 56776 488999999999
Q ss_pred eCCCCcc
Q 043779 573 FIDPRLT 579 (581)
Q Consensus 573 l~~~~i~ 579 (581)
|++|.+.
T Consensus 133 L~~N~~~ 139 (193)
T 2wfh_A 133 IGANPLY 139 (193)
T ss_dssp CCSSCEE
T ss_pred eCCCCee
Confidence 9998763
No 318
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=92.90 E-value=0.12 Score=55.16 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=29.3
Q ss_pred ccccCCCcccEeeecC-------------CccccccCC--CCC--CcccCCccccceEeeCCCCcc
Q 043779 531 HALYRVEFSRTLLIQP-------------TYPIILTNS--GEC--PSDISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 531 ~~~~~~~~lrtl~~~~-------------LrvL~l~~~--~~l--p~~i~~l~~LryL~l~~~~i~ 579 (581)
..+..+++|++|-+.+ |+.|+|++. ..+ |..+++|.+|++|+|+++.|+
T Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 94 HVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred HHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 3445555666555432 666666654 233 466777777777777777664
No 319
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=92.89 E-value=0.095 Score=58.96 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=16.8
Q ss_pred CccccccCCC---CCCcc--cCCccccceEeeCCCCcc
Q 043779 547 TYPIILTNSG---ECPSD--ISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 547 LrvL~l~~~~---~lp~~--i~~l~~LryL~l~~~~i~ 579 (581)
|+.|+|+++. .+|.. +++|.+|++|+|++|.++
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence 5555555431 13333 555666666666655554
No 320
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.89 E-value=0.055 Score=58.29 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 157 PEVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g-------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK-------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC-------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 45899998888888777642 36789999999999999999873
No 321
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=92.89 E-value=0.084 Score=56.77 Aligned_cols=67 Identities=7% Similarity=0.065 Sum_probs=48.5
Q ss_pred CceeEEEEeeCCCC-CcccccccCCCcccEeeecC----------------CccccccCCC----CCCcccCCccccceE
Q 043779 513 RQTRHVTFTLSKDS-FTIPHALYRVEFSRTLLIQP----------------TYPIILTNSG----ECPSDISKFHRLRAL 571 (581)
Q Consensus 513 ~~~r~l~~~~~~~~-~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~~----~lp~~i~~l~~LryL 571 (581)
...+++.+ .++.. ...+..+.++++|++|.+.+ |+.|+|+++. .+|..+++|++|++|
T Consensus 80 ~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 80 HHLSNLIL-TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp TTCCEEEC-TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred hhcCEeEC-CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 46777777 33332 22355677788888887653 8888888652 478999999999999
Q ss_pred eeCCCCccc
Q 043779 572 EFIDPRLTK 580 (581)
Q Consensus 572 ~l~~~~i~~ 580 (581)
+|++|.|+.
T Consensus 159 ~Ls~n~l~~ 167 (606)
T 3vq2_A 159 DLSYNYIQT 167 (606)
T ss_dssp ECCSSCCCE
T ss_pred EccCCccee
Confidence 999988764
No 322
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.86 E-value=0.084 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999874
No 323
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=92.83 E-value=0.09 Score=56.12 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=44.2
Q ss_pred eeEEEEeeCCCCCcccccccCCCcccEeeecC---------------CccccccCC--CCCCcccCCccccceEeeCCCC
Q 043779 515 TRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP---------------TYPIILTNS--GECPSDISKFHRLRALEFIDPR 577 (581)
Q Consensus 515 ~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~---------------LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~~ 577 (581)
.+.|.+ .++.....+. +..+++|++|.+.+ |+.|+|++. +.+| .+++|.+|++|+|++|.
T Consensus 443 L~~L~L-s~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHL-AHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEEC-TTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEe-cCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 556777 4443332333 66778888887654 788888764 5677 88889999999999888
Q ss_pred ccc
Q 043779 578 LTK 580 (581)
Q Consensus 578 i~~ 580 (581)
|+.
T Consensus 520 l~~ 522 (567)
T 1dce_A 520 LQQ 522 (567)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 324
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.81 E-value=0.055 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 325
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.76 E-value=0.069 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457889999999999999999987
No 326
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.75 E-value=0.1 Score=53.15 Aligned_cols=98 Identities=15% Similarity=0.230 Sum_probs=54.3
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcC----ceeEEEecCCCc-HhHHHHHHHHh--hCC
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFE----FRIWVFVFEDFN-VRRLMTDIITS--SGG 240 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~----~~~wv~v~~~~~-~~~l~~~il~~--l~~ 240 (581)
+.++.|..-.. + .-++|.|.+|+|||+|+.++.+.... +-+ .++++-+++... +.++...+... +..
T Consensus 140 raID~l~pigr---G-Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~r 213 (465)
T 3vr4_D 140 SAIDHLNTLVR---G-QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDR 213 (465)
T ss_dssp HHHHTTSCCBT---T-CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGG
T ss_pred eEEeccccccc---C-CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccc
Confidence 45555554322 2 23578999999999999999884332 222 456777776544 44555554432 110
Q ss_pred -----CCCCcCCHHH-----HHHHHHHHhc---CcceEEEEecc
Q 043779 241 -----NVSEAWNLDL-----LQRRLKDMLD---GKRYLLVLDDV 271 (581)
Q Consensus 241 -----~~~~~~~~~~-----l~~~l~~~l~---~k~~LlVlDdv 271 (581)
...+...... ..-.+.++++ ++.+||++||+
T Consensus 214 tvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 214 SVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 0011111111 1112344443 78999999999
No 327
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.74 E-value=0.045 Score=50.04 Aligned_cols=23 Identities=35% Similarity=0.239 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998753
No 328
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.71 E-value=0.056 Score=51.77 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4889999999999999999875
No 329
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.66 E-value=0.057 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 330
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=92.64 E-value=0.1 Score=56.26 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=36.4
Q ss_pred CceeEEEEeeCCCCCc-ccccccCCCcccEeeecC----------------CccccccCC--C--CCCcccCCccccceE
Q 043779 513 RQTRHVTFTLSKDSFT-IPHALYRVEFSRTLLIQP----------------TYPIILTNS--G--ECPSDISKFHRLRAL 571 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~-~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~--~lp~~i~~l~~LryL 571 (581)
...++|.+ .++.... .+..+..+.+|++|.+.+ |+.|+|++. . .+|..+++|.+|++|
T Consensus 100 ~~L~~L~L-s~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 100 SHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp TTCCEEEC-TTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCCEEEc-cCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 34556666 3332221 233455666666665432 666666643 1 346666677777777
Q ss_pred eeCCCCcc
Q 043779 572 EFIDPRLT 579 (581)
Q Consensus 572 ~l~~~~i~ 579 (581)
+|+++.|+
T Consensus 179 ~L~~N~l~ 186 (635)
T 4g8a_A 179 DLSSNKIQ 186 (635)
T ss_dssp ECCSSCCC
T ss_pred cccCcccc
Confidence 77776654
No 331
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.64 E-value=0.14 Score=50.26 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...++.|+|++|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999998763
No 332
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=92.62 E-value=0.11 Score=52.38 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=37.7
Q ss_pred CceeEEEEeeCCCC-CcccccccCCCcccEeeecC----------------CccccccCC--CCC-CcccCCccccceEe
Q 043779 513 RQTRHVTFTLSKDS-FTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GEC-PSDISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~-~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~l-p~~i~~l~~LryL~ 572 (581)
...+.+.+ .++.. ...+..+..+++|++|.+.+ |+.|++++. ..+ |..++++.+|++|+
T Consensus 93 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 93 HTIQKLYM-GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp TTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred CCcCEEEC-CCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 45666666 33222 22233455666666665443 666666654 233 44567777777777
Q ss_pred eCCCCccc
Q 043779 573 FIDPRLTK 580 (581)
Q Consensus 573 l~~~~i~~ 580 (581)
|++|.++.
T Consensus 172 l~~n~l~~ 179 (390)
T 3o6n_A 172 LSSNRLTH 179 (390)
T ss_dssp CCSSCCSB
T ss_pred CCCCcCCc
Confidence 77776653
No 333
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=92.62 E-value=0.17 Score=44.64 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=27.8
Q ss_pred CccccccC--CCCCCcc-cCCccccceEeeCCCCcccC
Q 043779 547 TYPIILTN--SGECPSD-ISKFHRLRALEFIDPRLTKF 581 (581)
Q Consensus 547 LrvL~l~~--~~~lp~~-i~~l~~LryL~l~~~~i~~l 581 (581)
|+.|+|++ .+.+|.. +++|.+|++|+|++|.|+.+
T Consensus 59 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence 88888876 3577766 48899999999999988753
No 334
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.62 E-value=0.056 Score=48.08 Aligned_cols=22 Identities=45% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999873
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.61 E-value=0.071 Score=52.42 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+++|+|+.|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998863
No 336
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.61 E-value=0.063 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...++|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999874
No 337
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.59 E-value=0.17 Score=45.66 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.|+|-|..|+||||.++.+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999874
No 338
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.58 E-value=0.032 Score=53.98 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=18.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|.|++|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 339
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=92.57 E-value=0.17 Score=44.44 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=46.7
Q ss_pred CCceeEEEEeeCCCCCc-ccccccCCCcccEeeecC----------------CccccccCC--CCCCcc-cCCccccceE
Q 043779 512 SRQTRHVTFTLSKDSFT-IPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSD-ISKFHRLRAL 571 (581)
Q Consensus 512 ~~~~r~l~~~~~~~~~~-~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~-i~~l~~LryL 571 (581)
+...+++.+ .++.... .+..+..+++|++|.+.+ |+.|+|++. +.+|.. ++++.+|++|
T Consensus 27 ~~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEe-CCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 456777777 4433321 233345677777776553 788888764 566655 6899999999
Q ss_pred eeCCCCcccC
Q 043779 572 EFIDPRLTKF 581 (581)
Q Consensus 572 ~l~~~~i~~l 581 (581)
+|++|.|+.+
T Consensus 106 ~l~~N~l~~~ 115 (177)
T 2o6r_A 106 ALDTNQLKSV 115 (177)
T ss_dssp ECCSSCCSCC
T ss_pred ECcCCcceEe
Confidence 9999988653
No 340
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.56 E-value=0.21 Score=60.13 Aligned_cols=85 Identities=16% Similarity=0.070 Sum_probs=55.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-----CcCCHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-----EAWNLDLLQRRLK 256 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 256 (581)
.-.++.|.|++|+||||||.+++..... .=..++|++....++... +..++.... ...+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 3468899999999999999999874332 223567877766665431 344443221 2346677766666
Q ss_pred HHhc-CcceEEEEecccc
Q 043779 257 DMLD-GKRYLLVLDDVWN 273 (581)
Q Consensus 257 ~~l~-~k~~LlVlDdv~~ 273 (581)
...+ .+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 5443 4567999999854
No 341
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.55 E-value=0.062 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999986
No 342
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=92.54 E-value=0.11 Score=51.93 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=39.9
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCC-CcccCCccccceEe
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GEC-PSDISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~l-p~~i~~l~~LryL~ 572 (581)
...+.|.+ .++... ..+..+..+++|+.|.+.+ |++|+|++. ..+ |..+++|.+|++|+
T Consensus 64 ~~L~~L~L-~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 64 TNLHSLLL-SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp TTCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEC-CCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 34556666 333322 1233455666777766543 667777654 233 56677788888888
Q ss_pred eCCCCccc
Q 043779 573 FIDPRLTK 580 (581)
Q Consensus 573 l~~~~i~~ 580 (581)
|++|.|+.
T Consensus 143 L~~N~l~~ 150 (361)
T 2xot_A 143 LSQNQISR 150 (361)
T ss_dssp CCSSCCCS
T ss_pred CCCCcCCe
Confidence 88877764
No 343
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.52 E-value=0.062 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 344
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.51 E-value=0.061 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4889999999999999999986
No 345
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=92.51 E-value=0.17 Score=48.80 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=18.8
Q ss_pred CccccccCC--CCCCccc-CCccccceEeeCCCCccc
Q 043779 547 TYPIILTNS--GECPSDI-SKFHRLRALEFIDPRLTK 580 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i-~~l~~LryL~l~~~~i~~ 580 (581)
|+.|+|++. +.+|..+ .+|.+|++|+|++|.|+.
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 555555542 4555443 556666666666666543
No 346
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.50 E-value=0.062 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 347
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.46 E-value=0.067 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 348
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.46 E-value=0.068 Score=50.19 Aligned_cols=22 Identities=36% Similarity=0.461 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 349
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.46 E-value=0.77 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-.+++|+|+.|+|||||.+.+..-
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999999863
No 350
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=92.43 E-value=0.16 Score=48.37 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=48.5
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--CCCCcc-cCCccccceEe
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSD-ISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~-i~~l~~LryL~ 572 (581)
...+.+.+ .++... ..+..+..+++|++|.+.+ |+.|+++++ ..+|.. ++++.+|++|+
T Consensus 109 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 109 TNLKELVL-VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp TTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEEC-CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 56788888 444332 2334467788899887654 888898875 455544 68999999999
Q ss_pred eCCCCccc
Q 043779 573 FIDPRLTK 580 (581)
Q Consensus 573 l~~~~i~~ 580 (581)
|++|.|+.
T Consensus 188 L~~N~l~~ 195 (272)
T 3rfs_A 188 LYQNQLKS 195 (272)
T ss_dssp CCSSCCSC
T ss_pred CCCCcCCc
Confidence 99998865
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.42 E-value=0.072 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+.|.|.|++|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999987
No 352
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.42 E-value=0.064 Score=50.97 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4889999999999999999876
No 353
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.42 E-value=0.083 Score=50.00 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 567889999999999999999985
No 354
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.41 E-value=0.055 Score=49.70 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3788999999999999999976
No 355
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.40 E-value=0.065 Score=50.44 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4889999999999999999976
No 356
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.31 E-value=0.12 Score=55.62 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=42.2
Q ss_pred CceeEEEEeeCCCC-CcccccccCCCcccEeeecC----------------CccccccCC--CCC-CcccCCccccceEe
Q 043779 513 RQTRHVTFTLSKDS-FTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GEC-PSDISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~~~-~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~l-p~~i~~l~~LryL~ 572 (581)
...+.|.+ .++.. ...+..+..+++|++|.+.+ |+.|+|+++ ..+ |..++++.+|++|+
T Consensus 99 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 99 HTIQKLYM-GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp TTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEC-CCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 46677777 33332 22334456677777776543 777777764 233 45678888888888
Q ss_pred eCCCCccc
Q 043779 573 FIDPRLTK 580 (581)
Q Consensus 573 l~~~~i~~ 580 (581)
|++|.|+.
T Consensus 178 L~~N~l~~ 185 (597)
T 3oja_B 178 LSSNRLTH 185 (597)
T ss_dssp CTTSCCSB
T ss_pred CcCCCCCC
Confidence 88877654
No 357
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=92.31 E-value=0.16 Score=48.72 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=48.2
Q ss_pred CceeEEEEeeCC-CCCcccccccCCCcccEeeecC----------------CccccccCC--CCCCc-ccCCccccceEe
Q 043779 513 RQTRHVTFTLSK-DSFTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPS-DISKFHRLRALE 572 (581)
Q Consensus 513 ~~~r~l~~~~~~-~~~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~-~i~~l~~LryL~ 572 (581)
...+++.+..+. -....+..+..+++|++|.+.+ |+.|+|++. ..+|. .++++.+|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 567888883332 2222345567788899887654 888888864 45654 488999999999
Q ss_pred eCCCCccc
Q 043779 573 FIDPRLTK 580 (581)
Q Consensus 573 l~~~~i~~ 580 (581)
|++|.|+.
T Consensus 160 l~~n~l~~ 167 (285)
T 1ozn_A 160 LHGNRISS 167 (285)
T ss_dssp CCSSCCCE
T ss_pred CCCCcccc
Confidence 99998764
No 358
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=92.30 E-value=0.1 Score=54.87 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=41.5
Q ss_pred CceeEEEEeeCCCC-CcccccccCCCcccEeeecC-------------CccccccCC--C--CCCcccCCccccceEeeC
Q 043779 513 RQTRHVTFTLSKDS-FTIPHALYRVEFSRTLLIQP-------------TYPIILTNS--G--ECPSDISKFHRLRALEFI 574 (581)
Q Consensus 513 ~~~r~l~~~~~~~~-~~~~~~~~~~~~lrtl~~~~-------------LrvL~l~~~--~--~lp~~i~~l~~LryL~l~ 574 (581)
...+++.+ .++.. ...+..+..+++|++|-+.+ |+.|+|+++ . .+|..+++|.+|++|+|+
T Consensus 45 ~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 45 SKLRILII-SHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123 (520)
T ss_dssp TTCCEEEC-CSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEE
T ss_pred ccccEEec-CCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEec
Confidence 35566666 33322 22244556667777766543 777777764 2 357788888888888888
Q ss_pred CCCcc
Q 043779 575 DPRLT 579 (581)
Q Consensus 575 ~~~i~ 579 (581)
+|.|+
T Consensus 124 ~n~l~ 128 (520)
T 2z7x_B 124 TTHLE 128 (520)
T ss_dssp ESSCC
T ss_pred Ccccc
Confidence 88764
No 359
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.29 E-value=0.076 Score=50.41 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=55.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc--HhHHHHHHHH--hhCCCCCCcCCHHHHHHHHHH
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN--VRRLMTDIIT--SSGGNVSEAWNLDLLQRRLKD 257 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~il~--~l~~~~~~~~~~~~l~~~l~~ 257 (581)
.-.+++|+|+.|+|||||.+.+..- ....+...+++.- .+.. .... ..++. .++. +. ..+...+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g-~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~ 93 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE-DPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRA 93 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEE-SSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcC-CcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHH
Confidence 3468999999999999999998762 1111122332211 1100 0000 00000 0000 01 123445556
Q ss_pred HhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhHHH
Q 043779 258 MLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKVAS 306 (581)
Q Consensus 258 ~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 306 (581)
.+..++=+|++|+.- +......+.... ..|.-|++||...+...
T Consensus 94 aL~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 94 ALREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HHhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 565567789999985 333333322222 24667888888665443
No 360
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.28 E-value=0.071 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 361
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.27 E-value=0.15 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+++|+|..|+|||||++.+..-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4579999999999999999998863
No 362
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.27 E-value=0.083 Score=45.42 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999874
No 363
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=92.26 E-value=0.085 Score=53.24 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=41.2
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC---------------CccccccCC--CCCCcccCCccccceEeeC
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP---------------TYPIILTNS--GECPSDISKFHRLRALEFI 574 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~---------------LrvL~l~~~--~~lp~~i~~l~~LryL~l~ 574 (581)
...+++.+ .++... ..+..+..+++|++|.+.+ |+.|+|+++ ..+|..++.+.+|++|+|+
T Consensus 248 ~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 248 PGLVEVDL-SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326 (390)
T ss_dssp TTCSEEEC-CSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC
T ss_pred CCccEEEC-CCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECC
Confidence 34556666 333221 1234455666676665543 777777764 4667777777788888888
Q ss_pred CCCccc
Q 043779 575 DPRLTK 580 (581)
Q Consensus 575 ~~~i~~ 580 (581)
+|.|+.
T Consensus 327 ~N~i~~ 332 (390)
T 3o6n_A 327 HNSIVT 332 (390)
T ss_dssp SSCCCC
T ss_pred CCccce
Confidence 777764
No 364
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.26 E-value=0.086 Score=47.10 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999874
No 365
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.25 E-value=0.069 Score=50.52 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 366
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.23 E-value=0.081 Score=52.65 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+++|+|+.|+||||+++.++.-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999998863
No 367
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.22 E-value=0.079 Score=49.50 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=25.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEec
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVF 222 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 222 (581)
.++.|.|++|+|||||+.+++..... .=..++|++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e 60 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALE 60 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcc
Confidence 58899999999999999887653211 11245666543
No 368
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.20 E-value=0.071 Score=50.63 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 369
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.19 E-value=0.071 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4889999999999999999976
No 370
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.19 E-value=0.074 Score=51.58 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-.+++|+|++|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 35899999999999999999986
No 371
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=92.15 E-value=0.13 Score=54.71 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=48.3
Q ss_pred CceeEEEEeeCCCCC-cccccccCCCcccEeeecC----------------CccccccCC--C--CCCcccCCccccceE
Q 043779 513 RQTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP----------------TYPIILTNS--G--ECPSDISKFHRLRAL 571 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~--~lp~~i~~l~~LryL 571 (581)
...+.+.+ .++... ..+..+..+++|++|.+.+ |+.|+|+++ . .+|..|++|.+|++|
T Consensus 76 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 76 SHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp TTCCEEEC-TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred hhCCEEeC-cCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence 46777777 433322 2335567788888887653 888888875 2 468999999999999
Q ss_pred eeCCCCccc
Q 043779 572 EFIDPRLTK 580 (581)
Q Consensus 572 ~l~~~~i~~ 580 (581)
+|++|.|+.
T Consensus 155 ~l~~n~l~~ 163 (570)
T 2z63_A 155 DLSSNKIQS 163 (570)
T ss_dssp ECTTSCCCE
T ss_pred eCcCCccce
Confidence 999988764
No 372
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.12 E-value=1.1 Score=50.43 Aligned_cols=121 Identities=22% Similarity=0.203 Sum_probs=62.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcC---ceeEEEecCCC-------cH-----------hHHHHHHHHhhCCCC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFE---FRIWVFVFEDF-------NV-----------RRLMTDIITSSGGNV 242 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~v~~~~-------~~-----------~~l~~~il~~l~~~~ 242 (581)
.+++|+|+.|.|||||.+.+..- .+. .++ ..-.+.+.+.. ++ ..-...++..++...
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 47899999999999999999831 111 111 00012222211 11 112334444444320
Q ss_pred ------CCcCCHHHH-HHHHHHHhcCcceEEEEeccccc-chhhHHHHhhhcCCCCCCcEEEEecCchhHHHhh
Q 043779 243 ------SEAWNLDLL-QRRLKDMLDGKRYLLVLDDVWNE-DQEKWDQLKCTLTCGSKGSSVVVTTRLAKVASIV 308 (581)
Q Consensus 243 ------~~~~~~~~l-~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 308 (581)
....+..+. .-.+...+-.++=+|+||.--.. |...-..+...+.. .|..||++|.+......+
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 112222222 22344555567789999986332 33333334444433 366788888877665543
No 373
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=92.12 E-value=0.18 Score=48.98 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=19.5
Q ss_pred CccccccCC--CCCCcccCCccccceEeeCCCCccc
Q 043779 547 TYPIILTNS--GECPSDISKFHRLRALEFIDPRLTK 580 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~~i~~ 580 (581)
|+.|+++++ ..+|. ++++.+|++|+|++|.|+.
T Consensus 131 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 131 LQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC
Confidence 555666543 23343 6666677777777766654
No 374
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.11 E-value=0.44 Score=44.31 Aligned_cols=104 Identities=19% Similarity=0.121 Sum_probs=53.5
Q ss_pred EEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCC--------CCC-----cCCHHHHH
Q 043779 186 YPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGN--------VSE-----AWNLDLLQ 252 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~--------~~~-----~~~~~~l~ 252 (581)
+.|+|+.|.|||.+|..+... . . ..++++. ....-..+....+.. ++.. ... ..+.+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~--~-~~~liv~-P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L--S-TPTLIVV-PTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S--C-SCEEEEE-SSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c--C-CCEEEEe-CCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 668999999999999888763 2 1 1233332 111111222222222 2111 000 11233333
Q ss_pred HHHHHHhcCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecC
Q 043779 253 RRLKDMLDGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTR 300 (581)
Q Consensus 253 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 300 (581)
.... .+.++--+||+|+++......+..+...++ ...++.+|.-
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3333 233445699999998766566776665554 2335555543
No 375
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=92.11 E-value=0.19 Score=44.04 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=27.8
Q ss_pred CccccccCC--CCCCcc-cCCccccceEeeCCCCcccC
Q 043779 547 TYPIILTNS--GECPSD-ISKFHRLRALEFIDPRLTKF 581 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~-i~~l~~LryL~l~~~~i~~l 581 (581)
|+.|+|++. +.+|.. +++|.+|++|+|++|.|+.+
T Consensus 56 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe
Confidence 888888863 567665 58999999999999988753
No 376
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.10 E-value=0.074 Score=50.07 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4889999999999999999986
No 377
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.09 E-value=0.069 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999999874
No 378
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.09 E-value=0.079 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|.|++|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 379
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.04 E-value=0.081 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.458 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.++.|+|++|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5889999999999999999886
No 380
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=92.04 E-value=0.16 Score=50.12 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=34.9
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC--------------CccccccCC--CCCCcccCCccccceEeeCCC
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP--------------TYPIILTNS--GECPSDISKFHRLRALEFIDP 576 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~--------------LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~ 576 (581)
...+++.+ .++.....+ .+..+++|++|.+.+ |+.|+++++ ..+|. ++++.+|++|+|++|
T Consensus 66 ~~L~~L~l-~~n~i~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 66 TNLEYLNL-NGNQITDIS-PLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp TTCCEEEC-CSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTC
T ss_pred CCccEEEc-cCCccccch-hhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCC
Confidence 46777777 333322112 256677777766543 666666654 34444 666666677766666
No 381
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.01 E-value=0.094 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+|.|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999874
No 382
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.98 E-value=0.078 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999863
No 383
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.97 E-value=0.078 Score=50.53 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 384
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=91.95 E-value=0.18 Score=48.62 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=8.8
Q ss_pred cCCccccceEeeCCCCcc
Q 043779 562 ISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 562 i~~l~~LryL~l~~~~i~ 579 (581)
++++.+|++|+|++|.|+
T Consensus 174 l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GTTCTTCCEEECCSSCCC
T ss_pred hcCCCccCEEECCCCcCC
Confidence 444455555555544443
No 385
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.92 E-value=0.079 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4889999999999999999986
No 386
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.91 E-value=0.21 Score=59.41 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC-----CcCCHHHHHHHHHHH
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS-----EAWNLDLLQRRLKDM 258 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~~~ 258 (581)
+++.|.|++|+||||||.+++. .....=..++|++....++... +..++.... ...+.+++...+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-cCcceEEEEecc
Q 043779 259 L-DGKRYLLVLDDV 271 (581)
Q Consensus 259 l-~~k~~LlVlDdv 271 (581)
. ..+.-++|+|.+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 387
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.87 E-value=0.11 Score=46.15 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999874
No 388
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.81 E-value=0.081 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.105 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|.|+.|+|||||++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999999886
No 389
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.79 E-value=0.15 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+++|+|++|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999999986
No 390
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.78 E-value=0.099 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..|.|.|..|+||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 391
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=91.77 E-value=0.23 Score=47.04 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=19.2
Q ss_pred CccccccCC--CCCCcccCCccccceEeeCCCCccc
Q 043779 547 TYPIILTNS--GECPSDISKFHRLRALEFIDPRLTK 580 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~~i~~ 580 (581)
|+.|+|++. +.+| .++++.+|++|+|++|.|+.
T Consensus 130 L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 130 LEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred ccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 555565543 3343 46666666666666666654
No 392
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.77 E-value=0.11 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345679999999999999999874
No 393
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.74 E-value=0.14 Score=44.76 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
....|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456789999999999999999874
No 394
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=91.73 E-value=0.22 Score=47.93 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=36.4
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC--------------CccccccCC--CCCCcccCCccccceEeeCCC
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP--------------TYPIILTNS--GECPSDISKFHRLRALEFIDP 576 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~--------------LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~ 576 (581)
...+.+.+ .++... ....+..+++|++|.+.+ |+.|+++++ ..+ +.++++.+|++|+|++|
T Consensus 90 ~~L~~L~l-~~n~l~-~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 90 KNLGWLFL-DENKVK-DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp TTCCEEEC-CSSCCC-CGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS
T ss_pred CCCCEEEC-CCCcCC-CChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC
Confidence 34555655 333222 122345566666665443 666666654 333 55777777777777777
Q ss_pred Cccc
Q 043779 577 RLTK 580 (581)
Q Consensus 577 ~i~~ 580 (581)
.|+.
T Consensus 167 ~l~~ 170 (291)
T 1h6t_A 167 QISD 170 (291)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7654
No 395
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.72 E-value=0.091 Score=45.21 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4679999999999999999865
No 396
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=91.70 E-value=0.22 Score=51.10 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=18.8
Q ss_pred CccccccCC--CCCCcccCCccccceEeeCCCCcc
Q 043779 547 TYPIILTNS--GECPSDISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~~i~ 579 (581)
|+.|+|+++ +.+| .+.++.+|++|+|++|.|+
T Consensus 187 L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 187 LRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCC
T ss_pred cCeecCCCCcCcccc-ccCCCcccCEEECCCCccC
Confidence 555555543 3444 3666666666666666654
No 397
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.64 E-value=0.097 Score=49.97 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999886
No 398
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=91.62 E-value=0.27 Score=43.33 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=44.7
Q ss_pred ceeEEEEeeCCCCCcccccccCCCcccEeeecC---------------------CccccccCCCCCC----cccCCcccc
Q 043779 514 QTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP---------------------TYPIILTNSGECP----SDISKFHRL 568 (581)
Q Consensus 514 ~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~---------------------LrvL~l~~~~~lp----~~i~~l~~L 568 (581)
...+|-++.+.-++.-...+..+++|++|.+.+ |+.|+|++|..+- ..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 567777733221221123346788888887654 7788999987764 347789999
Q ss_pred ceEeeCCCC-cc
Q 043779 569 RALEFIDPR-LT 579 (581)
Q Consensus 569 ryL~l~~~~-i~ 579 (581)
++|+|++|. |+
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 999999986 54
No 399
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.58 E-value=0.65 Score=49.65 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||++.+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5889999999999999998875
No 400
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=91.56 E-value=0.13 Score=47.77 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=17.1
Q ss_pred CccccccCC--CCCCcccCCccccc---eEeeCCC-Ccc
Q 043779 547 TYPIILTNS--GECPSDISKFHRLR---ALEFIDP-RLT 579 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i~~l~~Lr---yL~l~~~-~i~ 579 (581)
|+.|++++. +.+|+ ++++.+|+ +|+|+++ .|+
T Consensus 107 L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp CCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred CCEEeCCCCCCccccc-cccccccccccEEECCCCcchh
Confidence 555555432 34554 55555555 6666666 443
No 401
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.53 E-value=0.18 Score=51.35 Aligned_cols=100 Identities=11% Similarity=0.180 Sum_probs=54.5
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCcccc--------CCcC-ceeEEEecCCCc-HhHHHHHHHHh
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIK--------RHFE-FRIWVFVFEDFN-VRRLMTDIITS 237 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~v~~~~~-~~~l~~~il~~ 237 (581)
+.++.|..-.. + .-++|.|.+|+|||+|+.++.+..... ++=+ .++++-+++... +.++...+...
T Consensus 136 raID~l~pigr---G-Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~ 211 (464)
T 3gqb_B 136 STIDVMNTLVR---G-QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT 211 (464)
T ss_dssp HHHHTTSCCBT---T-CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT
T ss_pred eeeeccccccc---C-CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc
Confidence 45555554322 2 245688999999999999998753331 1112 456777776544 44555554432
Q ss_pred --hCC-----CCCCcCCHHHH-----HHHHHHHh---cCcceEEEEecc
Q 043779 238 --SGG-----NVSEAWNLDLL-----QRRLKDML---DGKRYLLVLDDV 271 (581)
Q Consensus 238 --l~~-----~~~~~~~~~~l-----~~~l~~~l---~~k~~LlVlDdv 271 (581)
+.. ...+....... .-.+.+++ .++.+||++||+
T Consensus 212 g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 212 GALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp SGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred ccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 100 00111112111 12234444 378999999999
No 402
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.48 E-value=0.14 Score=44.75 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.--|.|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 345779999999999999999874
No 403
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.47 E-value=1.2 Score=49.32 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=23.7
Q ss_pred hHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 043779 165 DKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..+.+...+... .++.|+|+.|.||||++..+..
T Consensus 98 q~~~i~~~l~~~-------~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 98 QRDEFLKLYQNN-------QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp GHHHHHHHHHHC-------SEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-------CeEEEECCCCCCHHHHHHHHHH
Confidence 345556655432 3788999999999997666543
No 404
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.46 E-value=0.092 Score=47.18 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=54.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEec-CCCcHhHHHHHHHHhhCCCCC--CcCCHHHHHHHHHHHh
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVF-EDFNVRRLMTDIITSSGGNVS--EAWNLDLLQRRLKDML 259 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~l~~~il~~l~~~~~--~~~~~~~l~~~l~~~l 259 (581)
-.+..++|+.|.||||.+....+... ...+...++-+.- ..+.. ..+...++.... ...+.. .+.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~d~r~~~----~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEIDNRYSK----EDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC-----------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCccchH----HHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 36889999999999998888777432 2223333322111 11111 111222221100 011111 233333
Q ss_pred cCcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 260 DGKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 260 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
.++--+|++|.+...+....+.+....+ .|..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 3333499999986655455555544333 266899988744
No 405
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.44 E-value=0.1 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999874
No 406
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.43 E-value=0.1 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5789999999999999999986
No 407
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.42 E-value=0.26 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 358889999999999999999874
No 408
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=91.38 E-value=0.15 Score=52.46 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=17.1
Q ss_pred CccccccCC--CCCCcc-cCCccccceEeeCCCCc
Q 043779 547 TYPIILTNS--GECPSD-ISKFHRLRALEFIDPRL 578 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~-i~~l~~LryL~l~~~~i 578 (581)
|+.|+|++. ..+|.. ++++.+|++|+|++|.+
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 555555543 344433 35566666666666554
No 409
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.38 E-value=0.096 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3679999999999999998753
No 410
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.37 E-value=0.11 Score=50.98 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999999863
No 411
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.34 E-value=0.1 Score=49.61 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3889999999999999999986
No 412
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.27 E-value=0.14 Score=44.46 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345779999999999999999864
No 413
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=91.26 E-value=0.2 Score=53.79 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=8.4
Q ss_pred cCCccccceEeeCCCCcc
Q 043779 562 ISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 562 i~~l~~LryL~l~~~~i~ 579 (581)
+++|.+|++|+|++|.|.
T Consensus 171 l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp GTTCTTCCEEECCSSCCC
T ss_pred hccCCCCCEEECcCCCCC
Confidence 444444444444444443
No 414
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.19 E-value=0.11 Score=45.08 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4679999999999999999874
No 415
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=91.17 E-value=0.16 Score=49.71 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=15.8
Q ss_pred CccccccCC--CCCCcccCCccccceEeeCCCCc
Q 043779 547 TYPIILTNS--GECPSDISKFHRLRALEFIDPRL 578 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~~i 578 (581)
|+.|+|++. ..+|..++.+.+|++|+|++|.+
T Consensus 216 L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred ccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence 444444432 34455555555555555555544
No 416
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.17 E-value=0.14 Score=52.00 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999987
No 417
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.15 E-value=0.34 Score=52.10 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=25.5
Q ss_pred eEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchhH
Q 043779 264 YLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAKV 304 (581)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 304 (581)
-+||+|++...+......+...++ .+.++|+.--..+.
T Consensus 264 d~lIIDEAsml~~~~~~~Ll~~l~---~~~~liLvGD~~QL 301 (608)
T 1w36_D 264 DVLVVDEASMIDLPMMSRLIDALP---DHARVIFLGDRDQL 301 (608)
T ss_dssp SEEEECSGGGCBHHHHHHHHHTCC---TTCEEEEEECTTSG
T ss_pred CEEEEechhhCCHHHHHHHHHhCC---CCCEEEEEcchhhc
Confidence 389999997666555566666654 46788876654443
No 418
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.13 E-value=0.085 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5899999999999999999875
No 419
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.10 E-value=0.34 Score=49.89 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=53.9
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHH-HHHhcCccccCCcCc-eeEEEecCCCc-HhHHHHHHHHhhC-----
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLA-QLVFNDDRIKRHFEF-RIWVFVFEDFN-VRRLMTDIITSSG----- 239 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~v~~~~~-~~~l~~~il~~l~----- 239 (581)
+.++.|..-.. + .-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++... +.++...+...-.
T Consensus 164 raID~l~Pigr---G-QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtv 235 (515)
T 2r9v_A 164 KAIDSMIPIGR---G-QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTT 235 (515)
T ss_dssp HHHHHHSCEET---T-CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEE
T ss_pred ccccccccccc---C-CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeE
Confidence 45666654332 2 35679999999999995 5777632 2443 46777877654 4455555554211
Q ss_pred ---CCCCCcCCHHHH-----HHHHHHHh--cCcceEEEEecc
Q 043779 240 ---GNVSEAWNLDLL-----QRRLKDML--DGKRYLLVLDDV 271 (581)
Q Consensus 240 ---~~~~~~~~~~~l-----~~~l~~~l--~~k~~LlVlDdv 271 (581)
...++ ...... .-.+.+++ +++.+||++||+
T Consensus 236 vV~atad~-p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 236 VVVASASD-PASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEECTTS-CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEECCCC-CHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11111 111111 11223333 478999999998
No 420
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=91.09 E-value=0.17 Score=53.17 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=43.0
Q ss_pred CCCceeEEEEeeCCCC-CcccccccCCCcccEeeecC----------------CccccccCC--CCCCcccCCccccceE
Q 043779 511 LSRQTRHVTFTLSKDS-FTIPHALYRVEFSRTLLIQP----------------TYPIILTNS--GECPSDISKFHRLRAL 571 (581)
Q Consensus 511 ~~~~~r~l~~~~~~~~-~~~~~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp~~i~~l~~LryL 571 (581)
.+..++++.+ .++.. ...+..+..+++|++|.+.+ |++|||++. +.+|.. ++.+|++|
T Consensus 19 ~~~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 19 LSQKTTILNI-SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHL 95 (520)
T ss_dssp CCTTCSEEEC-CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEE
T ss_pred ccccccEEEC-CCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEE
Confidence 3467888888 44433 22334567788888876554 777777653 456665 67777777
Q ss_pred eeCCCCccc
Q 043779 572 EFIDPRLTK 580 (581)
Q Consensus 572 ~l~~~~i~~ 580 (581)
+|++|.|+.
T Consensus 96 ~L~~N~l~~ 104 (520)
T 2z7x_B 96 DLSFNAFDA 104 (520)
T ss_dssp ECCSSCCSS
T ss_pred eccCCcccc
Confidence 777777653
No 421
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.08 E-value=0.11 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.-|.|+|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45779999999999999999875
No 422
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=91.06 E-value=0.27 Score=50.68 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=18.0
Q ss_pred CccccccCC--CCCCcccCCccccceEeeCCCCcc
Q 043779 547 TYPIILTNS--GECPSDISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~~i~ 579 (581)
|+.|+|+++ ..+| .++++.+|++|+|++|.|+
T Consensus 198 L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCS
T ss_pred CCEEECCCCcccccc-cccccccccEEECcCCcCc
Confidence 555555543 3343 3566666666666666654
No 423
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.02 E-value=0.15 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...-|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456779999999999999999874
No 424
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.01 E-value=0.13 Score=50.06 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=27.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCC
Q 043779 181 DDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFED 224 (581)
Q Consensus 181 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 224 (581)
...++|+|+|-||+||||+|..+..-....+ ..++-|.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 3568888999999999999988876322221 13445555433
No 425
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.01 E-value=0.48 Score=49.46 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-HhHHHHHH
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN-VRRLMTDI 234 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~i 234 (581)
++++.|..-.. -.-++|.|.+|+|||+|+.++.+. .+-+.++++-+++... +.+++.++
T Consensus 221 rvID~l~Pigr----Gqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTK----GGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBT----TCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccC----CCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 56777765432 236779999999999999999873 2235677888876643 44444443
No 426
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.00 E-value=0.14 Score=45.62 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
....|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456779999999999999999874
No 427
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.00 E-value=0.12 Score=45.86 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.--|.|+|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345679999999999999999874
No 428
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.99 E-value=0.26 Score=52.94 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=17.3
Q ss_pred CccccccCC--CCCCccc-CCccccceEeeCCCCcc
Q 043779 547 TYPIILTNS--GECPSDI-SKFHRLRALEFIDPRLT 579 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i-~~l~~LryL~l~~~~i~ 579 (581)
|+.|+|+++ ..+|..+ +++.+|++|+|++|.|+
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 555555543 3444442 55555666665555544
No 429
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.99 E-value=0.16 Score=44.10 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-|.|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 467999999999999999875
No 430
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.98 E-value=0.11 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4679999999999999998864
No 431
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.98 E-value=0.083 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
....|.|.|..|+||||+++.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 432
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.97 E-value=0.13 Score=45.56 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
+.+|+|+.|.|||||+..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999865
No 433
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.96 E-value=0.11 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4679999999999999999874
No 434
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.94 E-value=0.34 Score=49.88 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=53.9
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHH-HHHhcCccccCCcCc-eeEEEecCCCc-HhHHHHHHHHhhCCC---
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLA-QLVFNDDRIKRHFEF-RIWVFVFEDFN-VRRLMTDIITSSGGN--- 241 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~v~~~~~-~~~l~~~il~~l~~~--- 241 (581)
+.++.|..-.. + .-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++... +.++...+...-...
T Consensus 151 raID~l~Pigr---G-QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tv 222 (502)
T 2qe7_A 151 KAIDSMIPIGR---G-QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTI 222 (502)
T ss_dssp HHHHHSSCCBT---T-CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEE
T ss_pred eeccccccccc---C-CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeE
Confidence 45666654432 1 24679999999999995 5777632 2343 46777877654 445555555421111
Q ss_pred ----CCCcCCHHHH-----HHHHHHHh--cCcceEEEEecc
Q 043779 242 ----VSEAWNLDLL-----QRRLKDML--DGKRYLLVLDDV 271 (581)
Q Consensus 242 ----~~~~~~~~~l-----~~~l~~~l--~~k~~LlVlDdv 271 (581)
..+....... .-.+.+++ +++.+||++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 223 VVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 0111111111 11223333 478999999998
No 435
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.94 E-value=0.11 Score=46.23 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.|+|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5679999999999999999875
No 436
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.94 E-value=0.53 Score=48.35 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=53.6
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHH-HHHhcCccccCCcCc-eeEEEecCCCc-HhHHHHHHHHhhCCC---
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLA-QLVFNDDRIKRHFEF-RIWVFVFEDFN-VRRLMTDIITSSGGN--- 241 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~v~~~~~-~~~l~~~il~~l~~~--- 241 (581)
+.++.|..-.. + .-++|.|.+|+|||+|+ ..+.+. .+-+. ++++-+++... +.++...+...-...
T Consensus 151 kaID~l~Pigr---G-QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tv 222 (513)
T 3oaa_A 151 KAVDSMIPIGR---G-QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTI 222 (513)
T ss_dssp HHHHHHSCCBT---T-CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEE
T ss_pred eeecccccccc---C-CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceE
Confidence 45666654432 2 24679999999999996 566662 23333 56888887754 445555544321111
Q ss_pred ----CCCcCCHHHH-----HHHHHHHh--cCcceEEEEecc
Q 043779 242 ----VSEAWNLDLL-----QRRLKDML--DGKRYLLVLDDV 271 (581)
Q Consensus 242 ----~~~~~~~~~l-----~~~l~~~l--~~k~~LlVlDdv 271 (581)
..+....... .-.+.+++ +++.+||++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 223 VVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 0111111111 11122333 489999999999
No 437
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.92 E-value=0.12 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.+++|+|+.|.|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48899999999999999999863
No 438
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.91 E-value=0.22 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+++|+|++|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 439
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.90 E-value=0.12 Score=44.76 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999865
No 440
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=90.90 E-value=0.31 Score=47.83 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=37.7
Q ss_pred ceeEEEEeeCCCCC-cccccccCCCcccEeeecC-------------CccccccCC--CCCCc-ccCCccccceEeeCCC
Q 043779 514 QTRHVTFTLSKDSF-TIPHALYRVEFSRTLLIQP-------------TYPIILTNS--GECPS-DISKFHRLRALEFIDP 576 (581)
Q Consensus 514 ~~r~l~~~~~~~~~-~~~~~~~~~~~lrtl~~~~-------------LrvL~l~~~--~~lp~-~i~~l~~LryL~l~~~ 576 (581)
..+.+.+ .++... ..+..+..+++|++|.+.+ |+.|++++. ..+|. .++++.+|++|+|+++
T Consensus 79 ~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 79 HLYALVL-VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp TCCEEEC-CSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred CCcEEEC-CCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence 4555555 222221 1234455566666665543 666666653 34554 4778888888888888
Q ss_pred Ccc
Q 043779 577 RLT 579 (581)
Q Consensus 577 ~i~ 579 (581)
.++
T Consensus 158 ~l~ 160 (332)
T 2ft3_A 158 PLE 160 (332)
T ss_dssp CCB
T ss_pred ccc
Confidence 775
No 441
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=90.89 E-value=0.17 Score=50.11 Aligned_cols=59 Identities=15% Similarity=0.028 Sum_probs=26.7
Q ss_pred ceeEEEEeeC-CCCCc-ccccccCCCcccEeeecCCccccccCCCCC-CcccCCccccceEeeCCCCcc
Q 043779 514 QTRHVTFTLS-KDSFT-IPHALYRVEFSRTLLIQPTYPIILTNSGEC-PSDISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 514 ~~r~l~~~~~-~~~~~-~~~~~~~~~~lrtl~~~~LrvL~l~~~~~l-p~~i~~l~~LryL~l~~~~i~ 579 (581)
..+.|.+ .+ +.... .+..+..+.+|+.|.+.+ -..+.+ |..|++|.+|++|+|++|.|+
T Consensus 32 ~L~~L~l-~~~n~l~~~~~~~~~~l~~L~~L~l~~------N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 32 NLTELYI-ENQQHLQHLELRDLRGLGELRNLTIVK------SGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CCSEEEC-CSCSSCCEECGGGSCSCCCCSEEECCS------SCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CeeEEEc-cCCCCCCCcChhHhccccCCCEEECCC------CccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 4666777 32 33221 234455666666654433 001222 233445555555555555443
No 442
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.89 E-value=0.12 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 34679999999999999999875
No 443
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.84 E-value=0.13 Score=45.67 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3679999999999999999875
No 444
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.79 E-value=0.23 Score=45.16 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=52.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC--CcCCHHHHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS--EAWNLDLLQRRLKDMLD 260 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~--~~~~~~~l~~~l~~~l~ 260 (581)
-.+..++|..|.||||.+.......... ...+.+ +....+ ...-...+...++.... ...+.. .+...+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli-~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIV-FKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEE-EECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEE-EEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 3688899999999999888777643222 233332 222111 11111223333322211 111111 1222233
Q ss_pred CcceEEEEecccccchhhHHHHhhhcCCCCCCcEEEEecCchh
Q 043779 261 GKRYLLVLDDVWNEDQEKWDQLKCTLTCGSKGSSVVVTTRLAK 303 (581)
Q Consensus 261 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 303 (581)
++--+|++|.+.-.+.+..+.+....+ .|..||+|-++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 333499999997655555554444322 3668999988543
No 445
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.79 E-value=0.13 Score=51.09 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4889999999999999999976
No 446
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.78 E-value=0.46 Score=48.95 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=46.5
Q ss_pred EEEEEecCCCcHHHHH-HHHhcCccccCCcCc-eeEEEecCCCc-HhHHHHHHHHhhC--------CCCCCcC----CHH
Q 043779 185 IYPIVGMGGLGKTTLA-QLVFNDDRIKRHFEF-RIWVFVFEDFN-VRRLMTDIITSSG--------GNVSEAW----NLD 249 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~v~~~~~-~~~l~~~il~~l~--------~~~~~~~----~~~ 249 (581)
-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++... +.++...+...-. ...++.. ...
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 4569999999999995 5777632 2343 46777877654 3444444433210 0111110 011
Q ss_pred HHHHHHHHHh--cCcceEEEEecc
Q 043779 250 LLQRRLKDML--DGKRYLLVLDDV 271 (581)
Q Consensus 250 ~l~~~l~~~l--~~k~~LlVlDdv 271 (581)
...-.+.+++ .++.+||++||+
T Consensus 241 ~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 241 YTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecH
Confidence 1112222332 489999999998
No 447
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.75 E-value=0.15 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 448
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.72 E-value=0.15 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...-|.|+|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4456789999999999999999875
No 449
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.71 E-value=0.13 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
--|.|+|.+|+|||||+..+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999888764
No 450
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.70 E-value=0.14 Score=46.86 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
....|.|+|.+|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456779999999999999999874
No 451
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.70 E-value=0.12 Score=44.50 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 043779 186 YPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 186 i~I~G~~GiGKTtLa~~v~~~ 206 (581)
|.|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999999763
No 452
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.63 E-value=0.17 Score=52.79 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=16.3
Q ss_pred CccccccCC--CCCCcccCCccccceEeeCCCCcc
Q 043779 547 TYPIILTNS--GECPSDISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 547 LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~~i~ 579 (581)
|+.|+|++. ..+|+.++++.+|++|+|++|.|.
T Consensus 193 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred CCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 455555442 344444555555555555555443
No 453
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.62 E-value=0.17 Score=45.08 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...|.|+|.+|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346779999999999999999875
No 454
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.62 E-value=0.13 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999999864
No 455
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=90.58 E-value=0.3 Score=47.41 Aligned_cols=65 Identities=8% Similarity=0.087 Sum_probs=35.1
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC--------------CccccccCC--CCCCcccCCccccceEeeCCC
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP--------------TYPIILTNS--GECPSDISKFHRLRALEFIDP 576 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~--------------LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~ 576 (581)
...+++.+ .++..... ..+..+++|+.|.+.+ |+.|+|+++ ..+|. ++++.+|++|+|++|
T Consensus 129 ~~L~~L~l-~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 129 SNLQVLYL-DLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp TTCCEEEC-CSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS
T ss_pred CCCCEEEC-CCCccCcC-ccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCC
Confidence 45556666 33322211 1245566666665433 666666553 34443 667777777777777
Q ss_pred Cccc
Q 043779 577 RLTK 580 (581)
Q Consensus 577 ~i~~ 580 (581)
.|+.
T Consensus 206 ~l~~ 209 (308)
T 1h6u_A 206 QISD 209 (308)
T ss_dssp CCCB
T ss_pred ccCc
Confidence 6654
No 456
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.56 E-value=0.084 Score=56.60 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 043779 185 IYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~ 205 (581)
-|.++|++|+|||+||+.+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 467999999999999999886
No 457
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.55 E-value=0.19 Score=44.03 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...-|.|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4456789999999999999999875
No 458
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.55 E-value=0.12 Score=46.63 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999998763
No 459
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.55 E-value=0.2 Score=48.62 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHh
Q 043779 166 KEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVF 204 (581)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 204 (581)
++++.+.+.. .+++|+|++|+|||||.+.+.
T Consensus 156 i~~L~~~l~G--------~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEG--------FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTT--------CEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccC--------cEEEEECCCCCCHHHHHHHHH
Confidence 5666666532 378899999999999999998
No 460
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.54 E-value=0.19 Score=52.42 Aligned_cols=46 Identities=9% Similarity=-0.046 Sum_probs=30.9
Q ss_pred ccccchhhHHHHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 158 EVYGREEDKEKIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..+.|.+-.+.+.+...... .+..+|.+.|++|+||||+|+.+...
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~---~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRP---KQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGG---GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhccccc---ccceEEEecccCCCCHHHHHHHHHHH
Confidence 34455544445555432111 24578899999999999999999983
No 461
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.50 E-value=0.14 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.--|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345779999999999999998864
No 462
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.49 E-value=0.13 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
--|.|+|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45679999999999999998864
No 463
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.49 E-value=0.17 Score=44.31 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...-|.|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4456789999999999999998874
No 464
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.45 E-value=0.13 Score=45.88 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999864
No 465
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=90.40 E-value=0.28 Score=50.81 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=38.3
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC--------------CccccccCC--CCCCcccCCccccceEeeCCC
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP--------------TYPIILTNS--GECPSDISKFHRLRALEFIDP 576 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~--------------LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~ 576 (581)
...+++.+ .++.....+. +..+++|++|.+.+ |+.|+++++ ..+|. ++++.+|++|+|++|
T Consensus 68 ~~L~~L~L-s~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 68 NNLTQINF-SNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp TTCCEEEC-CSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE
T ss_pred cCCCEEEC-CCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC
Confidence 46677777 3333221222 56677777776543 666777654 34444 677777777777776
Q ss_pred Cccc
Q 043779 577 RLTK 580 (581)
Q Consensus 577 ~i~~ 580 (581)
.|..
T Consensus 145 ~l~~ 148 (466)
T 1o6v_A 145 TISD 148 (466)
T ss_dssp EECC
T ss_pred ccCC
Confidence 6543
No 466
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.36 E-value=0.14 Score=44.38 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
--|.|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 34679999999999999999864
No 467
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=90.36 E-value=0.3 Score=52.44 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=42.0
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC--------------CccccccCC--CCCCcccCCccccceEeeCCC
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP--------------TYPIILTNS--GECPSDISKFHRLRALEFIDP 576 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~--------------LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~ 576 (581)
...++|.+ .++... .+..+..+++|+.|.+.+ |+.|+|+++ ..+ ..+++|.+|++|+|++|
T Consensus 87 ~~L~~L~L-s~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 87 KNLGWLFL-DENKIK-DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp TTCCEEEC-CSSCCC-CCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS
T ss_pred CCCCEEEC-cCCCCC-CChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC
Confidence 35566666 333322 122455666777766543 777788765 344 67888999999999998
Q ss_pred Cccc
Q 043779 577 RLTK 580 (581)
Q Consensus 577 ~i~~ 580 (581)
.|..
T Consensus 164 ~l~~ 167 (605)
T 1m9s_A 164 QISD 167 (605)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 468
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.35 E-value=0.34 Score=50.36 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=40.3
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCc-HhHHHHHH
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFN-VRRLMTDI 234 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~i 234 (581)
++++.|..-.. -.-++|.|.+|+|||+|+.++.+. .+-+.++++-+++... +.+++..+
T Consensus 216 rvID~l~Pigk----Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAK----GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEET----TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCccc----CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 56677765432 236779999999999999998763 2234677888887765 34455443
No 469
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.31 E-value=0.17 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.++|+|.|.||+||||+|..+..-
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 367888999999999999988764
No 470
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=90.30 E-value=0.23 Score=48.12 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=29.8
Q ss_pred ccccCCCcccEeeecC----------------CccccccCC--CCCC-cccCCccccceEeeCCCCccc
Q 043779 531 HALYRVEFSRTLLIQP----------------TYPIILTNS--GECP-SDISKFHRLRALEFIDPRLTK 580 (581)
Q Consensus 531 ~~~~~~~~lrtl~~~~----------------LrvL~l~~~--~~lp-~~i~~l~~LryL~l~~~~i~~ 580 (581)
..+..+++|++|.+.+ |+.|+|++. ..+| ..++++.+|++|+|++|.|..
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 3445566666665443 666666654 3343 356677777777777776653
No 471
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=90.30 E-value=0.31 Score=47.34 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=27.4
Q ss_pred cCCCcccEeeecC----------------CccccccCCCC-----CC--cccCCccccceEeeCCCCcc
Q 043779 534 YRVEFSRTLLIQP----------------TYPIILTNSGE-----CP--SDISKFHRLRALEFIDPRLT 579 (581)
Q Consensus 534 ~~~~~lrtl~~~~----------------LrvL~l~~~~~-----lp--~~i~~l~~LryL~l~~~~i~ 579 (581)
..+++|++|.+.+ |+.|||++..- +| ..++++.+|++|+|++|.|+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 3466777666543 66667665421 22 23356777777777777664
No 472
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.26 E-value=0.28 Score=46.47 Aligned_cols=38 Identities=24% Similarity=0.154 Sum_probs=25.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFE 223 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 223 (581)
++|+|.|-||+||||+|..+..-.... . ..+.-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~-G-~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM-G-KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT-T-CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC-C-CcEEEEcCCC
Confidence 578889999999999998887633222 1 2344555543
No 473
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.26 E-value=0.15 Score=44.58 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.|+|.+|+|||||+..+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4679999999999999999864
No 474
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.25 E-value=0.15 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|+|||||.+.++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4889999999999999999976
No 475
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.24 E-value=0.15 Score=45.05 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..-|.|+|.+|+|||||+..+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 345779999999999999999865
No 476
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.22 E-value=0.14 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
..-++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 34678999999999999999886
No 477
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=90.20 E-value=0.33 Score=52.57 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=41.7
Q ss_pred ceeEEEEeeCCCCCccccccc--CCCcccEeeecC---------------CccccccC---------CCCCCcccCCccc
Q 043779 514 QTRHVTFTLSKDSFTIPHALY--RVEFSRTLLIQP---------------TYPIILTN---------SGECPSDISKFHR 567 (581)
Q Consensus 514 ~~r~l~~~~~~~~~~~~~~~~--~~~~lrtl~~~~---------------LrvL~l~~---------~~~lp~~i~~l~~ 567 (581)
..+.+.+ .++.....+..+. .+++|++|.+.+ |+.|+|++ ...+|..++++.+
T Consensus 489 ~L~~L~L-s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 489 LLTSIDL-RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp GCCEEEC-CSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CccEEEC-cCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 5566666 3333322333343 667777776543 77777743 2456888888888
Q ss_pred cceEeeCCCCccc
Q 043779 568 LRALEFIDPRLTK 580 (581)
Q Consensus 568 LryL~l~~~~i~~ 580 (581)
|++|+|++|.|..
T Consensus 568 L~~L~Ls~N~l~~ 580 (636)
T 4eco_A 568 LTQLQIGSNDIRK 580 (636)
T ss_dssp CCEEECCSSCCCB
T ss_pred CCEEECCCCcCCc
Confidence 8888888888754
No 478
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.19 E-value=0.12 Score=45.44 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
--|.|+|.+|+|||||+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34679999999999999999874
No 479
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.18 E-value=0.15 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.-|.|+|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999999764
No 480
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.16 E-value=0.15 Score=45.14 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 043779 185 IYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
-|.|+|.+|+|||||+..+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4679999999999999999875
No 481
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=90.16 E-value=0.22 Score=53.46 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=8.9
Q ss_pred ccccceEeeCCCCcc
Q 043779 565 FHRLRALEFIDPRLT 579 (581)
Q Consensus 565 l~~LryL~l~~~~i~ 579 (581)
+.+|++|+|++|.|+
T Consensus 152 l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 152 TEKLKVLDFQNNAIH 166 (606)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CcccCEEEcccCccc
Confidence 566666666665554
No 482
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.16 E-value=0.2 Score=43.30 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 34679999999999999999864
No 483
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.15 E-value=0.21 Score=45.37 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
+.|+|-|..|+||||+++.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 47889999999999999999873
No 484
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.15 E-value=0.1 Score=47.28 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...|+|+|.+|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999988763
No 485
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.12 E-value=0.15 Score=44.69 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..-|.|+|.+|+|||||+..+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456779999999999999999875
No 486
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.10 E-value=0.14 Score=46.95 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=53.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccccCCcCceeEEEecCCCcHhHHHHHHHHhhCCCCC----------CcCCHHHHHHH
Q 043779 185 IYPIVGMGGLGKTTLAQLVFNDDRIKRHFEFRIWVFVFEDFNVRRLMTDIITSSGGNVS----------EAWNLDLLQRR 254 (581)
Q Consensus 185 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~il~~l~~~~~----------~~~~~~~l~~~ 254 (581)
.|.+.|.||+||||+|..+..... ...++. ..+.+....+.. . ...+..+..... ...+... .
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~V-~v~d~D~q~~~~-~-~al~~gl~~~~~~~~~~~~~~~~e~~l~~---~ 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVRV-MAGVVETHGRAE-T-EALLNGLPQQPLLRTEYRGMTLEEMDLDA---L 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCCE-EEEECCCTTCHH-H-HHHHTTSCBCCCEEEEETTEEEEECCHHH---H
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-HCCCCE-EEEEeCCCCChh-H-HHHhcCccccCcceeecCCcccccccHHH---H
Confidence 467899999999999888877432 223333 333443322222 1 112222221110 1122222 1
Q ss_pred HHHHhcCcceEEEEeccccc------chhhHHHHhhhcCCCCCCcEEEEecCch
Q 043779 255 LKDMLDGKRYLLVLDDVWNE------DQEKWDQLKCTLTCGSKGSSVVVTTRLA 302 (581)
Q Consensus 255 l~~~l~~k~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~ 302 (581)
+. .+.=++|+|++-.. ....|..+...++ .|.-++.|+...
T Consensus 81 L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 LK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp HH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred Hh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 22 24669999987432 1235666655444 455788888744
No 487
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.08 E-value=0.13 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+|+|.|++|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 488
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.08 E-value=0.29 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+++|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999875
No 489
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.06 E-value=0.25 Score=50.53 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=55.3
Q ss_pred HHHHHHhcCcCCCCCeEEEEEEecCCCcHHHHHHHHhcCccccCC--cCceeEEEecCCCc-HhHHHHHHHHhhCCC---
Q 043779 168 KIVERLVKDVAGSDDISIYPIVGMGGLGKTTLAQLVFNDDRIKRH--FEFRIWVFVFEDFN-VRRLMTDIITSSGGN--- 241 (581)
Q Consensus 168 ~l~~~L~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~~~-~~~l~~~il~~l~~~--- 241 (581)
+.++.|..-.. + .-++|.|.+|+|||+|+.+++++...... =+.++++-+++... +.++..++...-...
T Consensus 141 r~ID~l~pigr---G-Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtv 216 (469)
T 2c61_A 141 STIDGTNTLVR---G-QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAV 216 (469)
T ss_dssp HHHHTTSCCBT---T-CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEE
T ss_pred Eeeeeeecccc---C-CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceE
Confidence 45666654332 1 24568899999999999999885433211 12456777776654 455666655421100
Q ss_pred ----CCCcCCHH-----HHHHHHHHHh---cCcceEEEEecc
Q 043779 242 ----VSEAWNLD-----LLQRRLKDML---DGKRYLLVLDDV 271 (581)
Q Consensus 242 ----~~~~~~~~-----~l~~~l~~~l---~~k~~LlVlDdv 271 (581)
..+..... ...-.+.+++ +++.+||++||+
T Consensus 217 vV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 217 VFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 01111111 1111233443 378999999998
No 490
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.05 E-value=0.19 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
..-|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999999854
No 491
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.04 E-value=0.19 Score=44.34 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
.--|.|+|.+|+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345679999999999999999865
No 492
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.04 E-value=0.16 Score=45.57 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34577999999999999999874
No 493
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.03 E-value=0.11 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFND 206 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~~ 206 (581)
...+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999988763
No 494
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=90.02 E-value=0.15 Score=48.30 Aligned_cols=63 Identities=8% Similarity=-0.031 Sum_probs=31.4
Q ss_pred CceeEEEEeeCCCCCcccccccCCCcccEeeecC--------------CccccccCC--CCCCcccCCccccceEeeCCC
Q 043779 513 RQTRHVTFTLSKDSFTIPHALYRVEFSRTLLIQP--------------TYPIILTNS--GECPSDISKFHRLRALEFIDP 576 (581)
Q Consensus 513 ~~~r~l~~~~~~~~~~~~~~~~~~~~lrtl~~~~--------------LrvL~l~~~--~~lp~~i~~l~~LryL~l~~~ 576 (581)
...+.+.+ .++.....+ .+..+++|++|.+.+ |+.|+|++. +.+|.... .+|++|+|++|
T Consensus 41 ~~L~~L~l-~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N 116 (263)
T 1xeu_A 41 SGVQNFNG-DNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNN 116 (263)
T ss_dssp TTCSEEEC-TTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSS
T ss_pred CcCcEEEC-cCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc--CcccEEEccCC
Confidence 46777777 444332122 345566666665443 445555443 23333222 55555555555
Q ss_pred Ccc
Q 043779 577 RLT 579 (581)
Q Consensus 577 ~i~ 579 (581)
.|+
T Consensus 117 ~l~ 119 (263)
T 1xeu_A 117 ELR 119 (263)
T ss_dssp CCS
T ss_pred ccC
Confidence 554
No 495
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.02 E-value=0.13 Score=46.34 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=20.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...-|.|+|.+|+|||||+..+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345678999999999999999863
No 496
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.02 E-value=0.17 Score=53.24 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999976
No 497
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.02 E-value=0.22 Score=44.88 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 043779 182 DISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 182 ~~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...+|+|+|++|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 557999999999999999988765
No 498
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.95 E-value=0.16 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4889999999999999999976
No 499
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.93 E-value=0.16 Score=50.81 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 043779 183 ISIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 183 ~~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
...++|+|+.|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999876
No 500
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.91 E-value=0.16 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 043779 184 SIYPIVGMGGLGKTTLAQLVFN 205 (581)
Q Consensus 184 ~vi~I~G~~GiGKTtLa~~v~~ 205 (581)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 4889999999999999999976
Done!