Query 043780
Match_columns 386
No_of_seqs 209 out of 664
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_O 26S proteasome regulato 100.0 1.1E-79 3.9E-84 619.5 19.6 377 2-385 6-393 (393)
2 3chm_A COP9 signalosome comple 100.0 2.9E-40 9.9E-45 295.3 13.5 145 199-357 23-169 (169)
3 3txn_A 26S proteasome regulato 99.9 1.3E-21 4.5E-26 196.3 29.4 305 52-375 75-389 (394)
4 4b4t_P 26S proteasome regulato 99.7 2.8E-16 9.6E-21 160.1 19.4 287 75-381 139-431 (445)
5 4b4t_R RPN7, 26S proteasome re 99.6 5.6E-14 1.9E-18 142.3 22.3 304 53-377 107-422 (429)
6 4b4t_Q 26S proteasome regulato 99.6 4.1E-13 1.4E-17 131.7 26.9 288 53-348 112-405 (434)
7 3t5x_A PCI domain-containing p 99.4 9.4E-12 3.2E-16 114.0 15.5 179 153-347 9-195 (203)
8 4b4t_S RPN3, 26S proteasome re 99.4 5.3E-11 1.8E-15 122.3 22.2 218 112-342 227-445 (523)
9 3t5v_B Nuclear mRNA export pro 99.3 5.7E-11 1.9E-15 121.0 18.3 224 112-345 172-429 (455)
10 1ufm_A COP9 complex subunit 4; 98.0 9.2E-06 3.2E-10 63.8 6.5 51 297-347 28-78 (84)
11 4b0z_A RPN12, 26S proteasome r 97.0 0.012 4.2E-07 54.2 14.0 184 128-322 19-214 (229)
12 3ro3_A PINS homolog, G-protein 92.5 3.1 0.00011 32.5 13.8 127 55-186 28-157 (164)
13 3u3w_A Transcriptional activat 90.8 8.4 0.00029 34.9 15.7 96 86-185 128-223 (293)
14 1wi9_A Protein C20ORF116 homol 90.5 0.69 2.4E-05 34.7 6.3 47 297-343 19-65 (72)
15 2hzt_A Putative HTH-type trans 90.2 2.5 8.7E-05 33.3 10.1 69 298-369 26-95 (107)
16 2qfc_A PLCR protein; TPR, HTH, 88.7 13 0.00046 33.4 16.0 98 84-185 126-223 (293)
17 3ro3_A PINS homolog, G-protein 87.6 7.9 0.00027 30.0 11.4 96 85-185 21-116 (164)
18 3ro2_A PINS homolog, G-protein 87.4 10 0.00036 33.4 13.4 128 55-187 202-332 (338)
19 1lj9_A Transcriptional regulat 86.2 8.1 0.00028 31.1 11.0 77 298-374 42-139 (144)
20 3sf4_A G-protein-signaling mod 85.3 19 0.00064 33.0 14.4 130 54-188 205-337 (406)
21 1z7u_A Hypothetical protein EF 84.9 10 0.00034 30.0 10.7 70 298-370 34-104 (112)
22 3gw4_A Uncharacterized protein 84.5 16 0.00053 30.1 13.9 130 55-188 45-177 (203)
23 1sfx_A Conserved hypothetical 84.2 8.8 0.0003 29.1 9.8 66 298-366 33-98 (109)
24 3bpv_A Transcriptional regulat 83.7 12 0.0004 29.8 10.8 50 298-347 42-91 (138)
25 1ub9_A Hypothetical protein PH 83.7 7.4 0.00025 29.3 9.1 38 298-335 29-66 (100)
26 3r0a_A Putative transcriptiona 83.5 5 0.00017 32.5 8.4 76 300-378 43-120 (123)
27 3ro2_A PINS homolog, G-protein 83.2 17 0.0006 31.8 12.8 127 55-186 162-291 (338)
28 2kko_A Possible transcriptiona 83.0 5.1 0.00017 31.6 8.0 63 298-368 37-99 (108)
29 1ku9_A Hypothetical protein MJ 82.7 3.8 0.00013 33.2 7.4 43 298-340 40-82 (152)
30 3edt_B KLC 2, kinesin light ch 82.6 18 0.0006 31.1 12.3 129 54-184 19-153 (283)
31 2oqg_A Possible transcriptiona 82.3 15 0.00053 28.4 11.4 37 298-334 33-69 (114)
32 2d1h_A ST1889, 109AA long hypo 82.1 11 0.00038 28.6 9.6 68 298-370 35-105 (109)
33 2gxg_A 146AA long hypothetical 81.9 8.2 0.00028 31.1 9.2 49 298-346 49-97 (146)
34 2a61_A Transcriptional regulat 81.5 9 0.00031 30.8 9.3 50 298-347 46-95 (145)
35 3f6o_A Probable transcriptiona 81.4 5.1 0.00017 32.0 7.6 73 298-378 30-106 (118)
36 3nf1_A KLC 1, kinesin light ch 80.8 28 0.00096 30.4 14.1 132 54-186 87-223 (311)
37 2fsw_A PG_0823 protein; alpha- 80.6 11 0.00037 29.4 9.2 67 298-367 37-104 (107)
38 4a1s_A PINS, partner of inscut 80.2 30 0.001 32.0 13.8 99 83-186 233-331 (411)
39 4aik_A Transcriptional regulat 79.3 14 0.00049 30.6 10.0 80 298-377 45-145 (151)
40 4hbl_A Transcriptional regulat 79.1 12 0.0004 30.6 9.3 75 298-372 54-146 (149)
41 4b4t_T 26S proteasome regulato 79.1 14 0.00047 34.5 10.7 184 129-322 17-223 (274)
42 3s2w_A Transcriptional regulat 78.5 13 0.00044 30.7 9.5 50 298-347 63-112 (159)
43 2ia0_A Putative HTH-type trans 78.4 5 0.00017 34.5 7.0 36 297-332 29-64 (171)
44 1yyv_A Putative transcriptiona 78.2 11 0.00038 30.9 8.8 84 277-369 32-116 (131)
45 3k0l_A Repressor protein; heli 77.8 16 0.00053 30.3 9.8 50 298-347 59-108 (162)
46 2ifu_A Gamma-SNAP; membrane fu 77.5 42 0.0014 30.4 16.1 126 54-185 94-222 (307)
47 1i1g_A Transcriptional regulat 77.3 4.3 0.00015 33.2 6.0 65 298-366 17-88 (141)
48 3bja_A Transcriptional regulat 77.2 10 0.00036 30.1 8.3 50 298-347 46-95 (139)
49 3cuo_A Uncharacterized HTH-typ 76.4 18 0.00062 27.0 9.1 61 297-365 36-96 (99)
50 2f2e_A PA1607; transcription f 76.3 17 0.00057 30.3 9.5 81 278-368 22-102 (146)
51 3deu_A Transcriptional regulat 76.2 15 0.00051 30.8 9.3 50 298-347 67-116 (166)
52 3g3z_A NMB1585, transcriptiona 75.8 6.6 0.00023 31.8 6.7 48 299-346 45-92 (145)
53 2fbh_A Transcriptional regulat 75.6 13 0.00045 29.8 8.5 67 297-365 50-116 (146)
54 3edt_B KLC 2, kinesin light ch 75.5 37 0.0013 28.9 17.2 132 53-185 60-196 (283)
55 3nrv_A Putative transcriptiona 75.4 16 0.00054 29.5 9.0 49 298-346 53-101 (148)
56 2qfc_A PLCR protein; TPR, HTH, 75.2 12 0.00041 33.8 9.1 105 80-188 162-270 (293)
57 3eco_A MEPR; mutlidrug efflux 75.1 17 0.00058 28.9 9.1 67 298-366 46-112 (139)
58 2htj_A P fimbrial regulatory p 74.9 13 0.00046 27.3 7.7 35 298-332 13-47 (81)
59 3pqk_A Biofilm growth-associat 74.8 13 0.00045 28.5 8.0 40 298-337 35-74 (102)
60 2rdp_A Putative transcriptiona 74.6 19 0.00065 29.0 9.4 50 298-347 55-104 (150)
61 3ulq_A Response regulator aspa 74.6 48 0.0016 30.7 13.4 55 86-143 237-291 (383)
62 3lwf_A LIN1550 protein, putati 74.2 9.6 0.00033 32.6 7.6 62 279-343 26-87 (159)
63 3gw4_A Uncharacterized protein 73.6 35 0.0012 27.8 11.0 95 85-183 38-132 (203)
64 2dbb_A Putative HTH-type trans 73.2 9 0.00031 31.7 7.0 36 297-332 21-56 (151)
65 2nnn_A Probable transcriptiona 73.1 19 0.00067 28.4 8.9 67 298-366 51-117 (140)
66 3f6v_A Possible transcriptiona 72.9 6.4 0.00022 33.3 6.1 71 298-376 70-141 (151)
67 2eth_A Transcriptional regulat 72.8 26 0.00088 28.6 9.8 49 298-346 57-105 (154)
68 1s3j_A YUSO protein; structura 72.8 11 0.00038 30.7 7.5 49 298-346 50-98 (155)
69 3i4p_A Transcriptional regulat 72.8 15 0.00051 31.0 8.4 68 297-365 15-89 (162)
70 3qky_A Outer membrane assembly 72.8 47 0.0016 28.8 16.6 96 86-191 110-228 (261)
71 1qgp_A Protein (double strande 72.7 4 0.00014 30.6 4.2 37 297-333 29-65 (77)
72 3u3w_A Transcriptional activat 72.6 32 0.0011 30.9 11.3 100 82-185 164-267 (293)
73 3bj6_A Transcriptional regulat 72.5 27 0.00092 28.1 9.8 49 298-346 53-101 (152)
74 2cfx_A HTH-type transcriptiona 72.1 7.7 0.00026 32.0 6.3 36 297-332 17-52 (144)
75 2pn6_A ST1022, 150AA long hypo 71.9 10 0.00035 31.3 7.0 39 297-335 15-56 (150)
76 2cg4_A Regulatory protein ASNC 71.3 9.2 0.00031 31.7 6.7 40 297-336 20-62 (152)
77 4a5n_A Uncharacterized HTH-typ 70.7 43 0.0015 27.5 10.7 84 276-368 22-106 (131)
78 3t8r_A Staphylococcus aureus C 70.1 11 0.00036 31.5 6.7 60 281-343 12-71 (143)
79 3kp7_A Transcriptional regulat 70.0 14 0.00047 30.1 7.5 75 298-372 50-147 (151)
80 3oop_A LIN2960 protein; protei 69.7 14 0.00046 29.8 7.2 50 298-347 50-99 (143)
81 3jth_A Transcription activator 69.4 25 0.00086 26.5 8.4 39 298-336 35-73 (98)
82 2e1c_A Putative HTH-type trans 69.1 6.3 0.00022 33.9 5.2 36 297-332 39-74 (171)
83 3nf1_A KLC 1, kinesin light ch 69.0 58 0.002 28.3 12.7 97 83-180 79-175 (311)
84 2cyy_A Putative HTH-type trans 68.9 13 0.00043 30.9 7.0 36 297-332 19-54 (151)
85 3bdd_A Regulatory protein MARR 68.6 33 0.0011 27.1 9.4 48 298-345 44-91 (142)
86 3q15_A PSP28, response regulat 68.2 46 0.0016 30.9 11.7 129 54-188 159-291 (378)
87 2y75_A HTH-type transcriptiona 68.2 16 0.00055 29.4 7.4 36 297-332 24-59 (129)
88 2fa5_A Transcriptional regulat 67.9 21 0.00072 29.2 8.2 45 298-342 62-106 (162)
89 2xev_A YBGF; tetratricopeptide 67.8 36 0.0012 25.5 11.3 96 85-191 14-109 (129)
90 1xn7_A Hypothetical protein YH 67.7 11 0.00039 28.3 5.8 42 285-330 6-47 (78)
91 3cjn_A Transcriptional regulat 67.2 34 0.0012 28.0 9.4 49 298-346 65-113 (162)
92 1jgs_A Multiple antibiotic res 66.8 33 0.0011 27.1 9.0 50 298-347 47-96 (138)
93 3boq_A Transcriptional regulat 66.8 14 0.00048 30.3 6.9 49 298-346 61-109 (160)
94 3hsr_A HTH-type transcriptiona 66.7 21 0.00072 28.6 7.8 68 297-366 48-115 (140)
95 4a1s_A PINS, partner of inscut 66.1 81 0.0028 29.0 19.0 131 54-189 241-374 (411)
96 1uly_A Hypothetical protein PH 66.0 35 0.0012 29.8 9.6 35 298-332 32-66 (192)
97 2heo_A Z-DNA binding protein 1 65.7 13 0.00043 26.8 5.5 34 298-331 24-57 (67)
98 3qky_A Outer membrane assembly 64.9 69 0.0024 27.7 12.0 103 16-145 14-126 (261)
99 2p5v_A Transcriptional regulat 64.7 13 0.00043 31.3 6.2 35 298-332 23-57 (162)
100 2p7v_B Sigma-70, RNA polymeras 64.5 7.8 0.00027 27.6 4.2 28 298-325 24-51 (68)
101 2v79_A DNA replication protein 64.2 16 0.00056 30.2 6.7 60 281-343 36-97 (135)
102 2xev_A YBGF; tetratricopeptide 63.5 42 0.0014 25.2 8.7 58 82-145 48-105 (129)
103 2fbi_A Probable transcriptiona 63.5 43 0.0015 26.3 9.1 50 298-347 49-98 (142)
104 2hr3_A Probable transcriptiona 63.3 24 0.00081 28.3 7.5 50 298-347 49-98 (147)
105 3e6m_A MARR family transcripti 63.2 16 0.00056 30.1 6.6 50 298-347 66-115 (161)
106 1oyi_A Double-stranded RNA-bin 63.1 8.8 0.0003 29.4 4.3 32 300-331 31-62 (82)
107 3df8_A Possible HXLR family tr 62.8 51 0.0017 25.8 9.2 85 275-370 22-107 (111)
108 1qbj_A Protein (double-strande 62.7 9.5 0.00033 28.9 4.5 36 297-332 25-60 (81)
109 1r1u_A CZRA, repressor protein 62.7 20 0.00069 27.7 6.7 38 298-335 38-75 (106)
110 1qqe_A Vesicular transport pro 62.7 86 0.0029 28.0 21.2 205 53-264 54-267 (292)
111 3sf4_A G-protein-signaling mod 62.5 90 0.0031 28.2 17.6 127 55-186 166-295 (406)
112 3ech_A MEXR, multidrug resista 62.0 23 0.0008 28.3 7.3 50 298-347 50-99 (142)
113 2w25_A Probable transcriptiona 61.6 17 0.00058 30.0 6.4 37 297-333 19-55 (150)
114 1xd7_A YWNA; structural genomi 61.1 18 0.0006 30.0 6.4 48 281-333 10-57 (145)
115 3fm5_A Transcriptional regulat 61.0 31 0.0011 27.8 7.9 50 298-347 53-102 (150)
116 3bro_A Transcriptional regulat 60.9 53 0.0018 25.8 9.2 67 299-367 50-116 (141)
117 2nyx_A Probable transcriptiona 60.8 35 0.0012 28.3 8.4 50 298-347 58-107 (168)
118 1ylf_A RRF2 family protein; st 60.5 20 0.00067 29.9 6.6 48 283-333 17-64 (149)
119 2k02_A Ferrous iron transport 60.4 13 0.00044 28.7 4.9 44 285-332 6-49 (87)
120 1ku3_A Sigma factor SIGA; heli 60.1 9.6 0.00033 27.5 4.0 27 298-324 29-55 (73)
121 1u2w_A CADC repressor, cadmium 59.8 28 0.00095 27.8 7.2 37 298-334 55-91 (122)
122 2pg4_A Uncharacterized protein 59.0 18 0.00062 27.3 5.7 39 299-339 30-69 (95)
123 1qqe_A Vesicular transport pro 58.4 1E+02 0.0035 27.5 13.5 132 54-189 95-230 (292)
124 3nqo_A MARR-family transcripti 58.0 51 0.0017 28.1 9.1 51 297-347 55-105 (189)
125 3tgn_A ADC operon repressor AD 57.9 32 0.0011 27.4 7.4 49 300-348 52-100 (146)
126 3cdh_A Transcriptional regulat 57.8 25 0.00087 28.5 6.8 46 297-342 55-100 (155)
127 1tty_A Sigma-A, RNA polymerase 57.0 11 0.00038 28.3 4.0 28 298-325 37-64 (87)
128 2pex_A Transcriptional regulat 56.5 66 0.0022 25.8 9.2 49 298-346 60-108 (153)
129 3t72_q RNA polymerase sigma fa 56.5 10 0.00035 29.8 3.9 28 298-325 38-65 (99)
130 3f3x_A Transcriptional regulat 56.4 56 0.0019 26.0 8.7 64 301-366 52-115 (144)
131 2jsc_A Transcriptional regulat 56.3 31 0.001 27.3 6.8 37 299-335 34-70 (118)
132 3u2r_A Regulatory protein MARR 55.1 42 0.0015 27.7 7.9 67 298-366 61-127 (168)
133 4b8x_A SCO5413, possible MARR- 54.4 51 0.0017 26.8 8.2 52 297-348 49-100 (147)
134 2frh_A SARA, staphylococcal ac 54.3 25 0.00085 28.0 6.0 70 298-369 52-121 (127)
135 3hug_A RNA polymerase sigma fa 53.9 18 0.00062 27.3 4.8 28 298-325 52-79 (92)
136 4gcn_A Protein STI-1; structur 53.7 75 0.0026 24.5 11.1 93 84-186 19-111 (127)
137 1elr_A TPR2A-domain of HOP; HO 53.3 64 0.0022 23.6 10.5 95 85-189 16-110 (131)
138 2kck_A TPR repeat; tetratricop 53.3 58 0.002 23.1 9.2 92 84-190 17-109 (112)
139 2xpi_A Anaphase-promoting comp 52.7 1.7E+02 0.0058 28.4 16.5 175 3-190 392-582 (597)
140 4i17_A Hypothetical protein; T 52.4 1E+02 0.0035 25.8 11.4 98 80-187 49-146 (228)
141 1z91_A Organic hydroperoxide r 51.7 28 0.00095 27.9 6.0 43 298-340 53-95 (147)
142 3k69_A Putative transcription 49.8 35 0.0012 29.0 6.5 56 283-342 15-70 (162)
143 2v5f_A Prolyl 4-hydroxylase su 49.5 32 0.0011 26.1 5.7 69 120-191 9-79 (104)
144 2vn2_A DNAD, chromosome replic 49.4 26 0.00088 28.4 5.4 53 281-336 36-88 (128)
145 2qww_A Transcriptional regulat 48.7 34 0.0012 27.6 6.1 45 298-342 54-100 (154)
146 3q15_A PSP28, response regulat 48.6 1.6E+02 0.0056 27.0 17.6 128 55-186 120-250 (378)
147 3u4t_A TPR repeat-containing p 48.3 1.3E+02 0.0043 25.6 11.8 95 88-191 157-254 (272)
148 2bv6_A MGRA, HTH-type transcri 48.2 42 0.0014 26.6 6.5 50 298-347 50-99 (142)
149 3ulq_A Response regulator aspa 48.1 1.7E+02 0.0057 26.9 18.0 128 55-186 122-252 (383)
150 2o8x_A Probable RNA polymerase 48.0 16 0.00056 25.5 3.5 27 298-324 30-56 (70)
151 3rkv_A Putative peptidylprolyl 47.7 1E+02 0.0035 24.4 9.6 97 86-190 24-129 (162)
152 3u4t_A TPR repeat-containing p 47.3 91 0.0031 26.6 9.1 88 86-187 16-103 (272)
153 4i17_A Hypothetical protein; T 47.1 1.3E+02 0.0043 25.2 13.0 104 70-190 5-108 (228)
154 4b4t_Q 26S proteasome regulato 46.6 1.8E+02 0.0061 26.8 12.8 94 86-184 108-204 (434)
155 1tbx_A ORF F-93, hypothetical 46.4 82 0.0028 23.5 7.6 69 297-370 20-92 (99)
156 2jt1_A PEFI protein; solution 46.3 23 0.00077 26.5 4.1 34 298-331 23-56 (77)
157 1r1t_A Transcriptional repress 46.2 55 0.0019 26.1 6.9 37 298-334 58-94 (122)
158 3k9t_A Putative peptidase; str 45.7 16 0.00053 36.5 4.0 47 279-331 388-434 (435)
159 2ifu_A Gamma-SNAP; membrane fu 44.9 1.7E+02 0.0059 26.1 17.0 155 82-256 85-254 (307)
160 2qlz_A Transcription factor PF 44.4 22 0.00076 32.3 4.6 43 297-342 176-218 (232)
161 2lni_A Stress-induced-phosphop 44.1 93 0.0032 22.9 8.7 88 85-189 28-115 (133)
162 2xpi_A Anaphase-promoting comp 43.7 2.3E+02 0.008 27.3 15.6 28 3-30 358-385 (597)
163 2jpc_A SSRB; DNA binding prote 43.6 21 0.00071 24.3 3.4 27 298-324 12-38 (61)
164 1rz4_A Eukaryotic translation 43.3 87 0.003 28.2 8.4 81 231-322 95-176 (226)
165 1q1h_A TFE, transcription fact 43.2 37 0.0013 26.2 5.3 69 299-371 33-104 (110)
166 3k9i_A BH0479 protein; putativ 42.0 50 0.0017 24.8 5.8 90 88-191 5-94 (117)
167 2ho1_A Type 4 fimbrial biogene 41.7 1.6E+02 0.0053 24.7 15.2 26 3-28 56-81 (252)
168 2p4w_A Transcriptional regulat 41.2 1.8E+02 0.0062 25.4 11.1 38 298-335 27-64 (202)
169 2lfw_A PHYR sigma-like domain; 40.9 19 0.00064 29.9 3.3 28 297-324 107-134 (157)
170 2qvo_A Uncharacterized protein 40.9 43 0.0015 25.2 5.2 46 298-343 29-74 (95)
171 1y0u_A Arsenical resistance op 40.6 78 0.0027 23.7 6.7 35 299-333 43-77 (96)
172 1tc3_C Protein (TC3 transposas 40.4 21 0.00072 22.5 2.9 24 299-322 21-44 (51)
173 1elw_A TPR1-domain of HOP; HOP 39.9 99 0.0034 22.0 11.5 89 85-190 16-104 (118)
174 1j5y_A Transcriptional regulat 39.4 71 0.0024 27.4 6.9 50 279-331 19-69 (187)
175 1hz4_A MALT regulatory protein 39.3 1.8E+02 0.0062 26.3 10.3 100 86-188 66-165 (373)
176 3mzy_A RNA polymerase sigma-H 39.0 23 0.0008 28.6 3.6 28 298-325 123-150 (164)
177 3as5_A MAMA; tetratricopeptide 38.0 1.4E+02 0.0048 23.1 9.9 96 79-191 48-143 (186)
178 3uq3_A Heat shock protein STI1 37.9 1.7E+02 0.0059 24.2 12.9 84 55-144 24-107 (258)
179 4gco_A Protein STI-1; structur 37.6 1.4E+02 0.0047 23.0 9.9 90 85-191 25-114 (126)
180 2x4h_A Hypothetical protein SS 37.3 1.3E+02 0.0046 23.6 8.0 43 297-343 29-71 (139)
181 2dba_A Smooth muscle cell asso 36.9 1.3E+02 0.0045 22.5 10.1 92 85-190 40-131 (148)
182 3qww_A SET and MYND domain-con 36.8 1.8E+02 0.0062 28.4 10.3 90 85-176 310-400 (433)
183 2xvc_A ESCRT-III, SSO0910; cel 36.8 65 0.0022 22.9 4.9 35 296-330 22-56 (59)
184 2fbk_A Transcriptional regulat 36.8 31 0.0011 29.1 4.1 45 299-343 86-130 (181)
185 2dk5_A DNA-directed RNA polyme 36.7 1.1E+02 0.0038 23.3 6.9 47 297-343 34-82 (91)
186 4g1t_A Interferon-induced prot 36.2 1.6E+02 0.0054 27.6 9.6 66 79-145 57-123 (472)
187 1on2_A Transcriptional regulat 36.2 91 0.0031 24.8 6.8 43 298-343 21-63 (142)
188 2fxa_A Protease production reg 36.2 43 0.0015 29.2 5.1 50 298-347 61-110 (207)
189 1je8_A Nitrate/nitrite respons 36.1 31 0.0011 25.5 3.5 26 299-324 36-61 (82)
190 3kor_A Possible Trp repressor; 35.9 69 0.0024 26.1 5.7 42 276-327 61-102 (119)
191 2esh_A Conserved hypothetical 35.6 1.6E+02 0.0054 23.1 11.4 54 276-335 9-71 (118)
192 3jw4_A Transcriptional regulat 34.8 28 0.00095 28.1 3.4 68 298-367 56-123 (148)
193 3c57_A Two component transcrip 34.5 33 0.0011 26.1 3.6 28 298-325 41-68 (95)
194 1or7_A Sigma-24, RNA polymeras 34.4 30 0.001 29.1 3.6 28 298-325 155-182 (194)
195 2y4t_A DNAJ homolog subfamily 34.4 2.8E+02 0.0095 25.5 17.7 159 2-191 161-328 (450)
196 1x3u_A Transcriptional regulat 34.0 37 0.0013 24.3 3.6 27 298-324 30-56 (79)
197 2zkz_A Transcriptional repress 33.5 68 0.0023 24.3 5.3 36 298-334 40-75 (99)
198 1ihg_A Cyclophilin 40; ppiase 33.4 2.3E+02 0.0077 26.7 10.1 98 85-190 235-339 (370)
199 2rnj_A Response regulator prot 32.7 32 0.0011 25.8 3.1 26 299-324 44-69 (91)
200 1xsv_A Hypothetical UPF0122 pr 32.1 68 0.0023 25.3 5.2 27 298-324 40-66 (113)
201 4fx0_A Probable transcriptiona 31.5 1.3E+02 0.0043 24.5 7.0 50 297-347 50-99 (148)
202 3b73_A PHIH1 repressor-like pr 31.0 80 0.0027 25.1 5.4 35 298-332 26-62 (111)
203 3hym_B Cell division cycle pro 30.8 2.6E+02 0.0089 24.1 15.1 50 86-144 138-187 (330)
204 1txp_A HnRNP C, heterogeneous 30.8 64 0.0022 19.4 3.4 26 356-381 2-27 (28)
205 4ham_A LMO2241 protein; struct 30.2 2.1E+02 0.0071 22.8 9.7 71 296-369 35-105 (134)
206 2ho1_A Type 4 fimbrial biogene 30.1 2.4E+02 0.0082 23.5 16.9 51 85-144 83-133 (252)
207 2vyi_A SGTA protein; chaperone 29.9 1.6E+02 0.0053 21.2 10.9 88 85-189 24-111 (131)
208 1p4w_A RCSB; solution structur 29.6 44 0.0015 25.9 3.5 25 299-323 49-73 (99)
209 2wte_A CSA3; antiviral protein 29.4 1.2E+02 0.0041 27.5 7.0 69 298-374 165-233 (244)
210 1nxh_A MTH396 protein; hypothe 29.3 36 0.0012 27.9 3.0 41 305-371 28-68 (126)
211 2fbn_A 70 kDa peptidylprolyl i 29.1 2.3E+02 0.0079 23.0 11.2 96 85-190 50-154 (198)
212 1fse_A GERE; helix-turn-helix 29.1 49 0.0017 23.1 3.5 26 299-324 26-51 (74)
213 3sz7_A HSC70 cochaperone (SGT) 29.1 2.1E+02 0.0072 22.5 12.6 90 85-191 23-112 (164)
214 3ulq_B Transcriptional regulat 28.8 1E+02 0.0034 23.2 5.4 26 299-324 44-69 (90)
215 2qc0_A Uncharacterized protein 28.3 3.9E+02 0.013 25.4 13.7 45 284-332 300-344 (373)
216 4ga2_A E3 SUMO-protein ligase 28.3 94 0.0032 24.7 5.6 96 79-191 3-98 (150)
217 1mkm_A ICLR transcriptional re 28.2 1.1E+02 0.0036 27.4 6.4 35 298-332 22-56 (249)
218 3ieg_A DNAJ homolog subfamily 27.8 3E+02 0.01 23.9 19.8 94 84-190 245-338 (359)
219 3n71_A Histone lysine methyltr 27.8 2.4E+02 0.0083 28.0 9.6 89 86-176 322-411 (490)
220 1s7o_A Hypothetical UPF0122 pr 27.4 50 0.0017 26.2 3.6 27 298-324 37-63 (113)
221 3f8b_A Transcriptional regulat 27.3 2.2E+02 0.0076 22.2 9.2 91 276-377 8-108 (116)
222 3q49_B STIP1 homology and U bo 26.9 2E+02 0.0067 21.4 12.3 88 85-189 21-108 (137)
223 3mv2_B Coatomer subunit epsilo 26.8 3.8E+02 0.013 25.1 10.2 61 78-145 105-165 (310)
224 2x48_A CAG38821; archeal virus 26.8 30 0.001 23.1 1.9 22 299-320 31-52 (55)
225 4abn_A Tetratricopeptide repea 26.6 4.4E+02 0.015 25.3 12.1 89 87-189 193-289 (474)
226 3hym_B Cell division cycle pro 26.4 3.1E+02 0.011 23.6 17.7 98 82-189 202-301 (330)
227 4gq2_M Nucleoporin NUP120; bet 26.0 2.7E+02 0.0093 30.2 10.2 87 121-209 845-946 (950)
228 4b4t_R RPN7, 26S proteasome re 25.8 2.1E+02 0.0073 27.7 8.6 105 33-145 130-237 (429)
229 2xrn_A HTH-type transcriptiona 25.5 1.1E+02 0.0036 27.3 5.9 50 298-352 20-69 (241)
230 2e9h_A EIF-5, eukaryotic trans 25.1 2.3E+02 0.0079 24.1 7.5 54 300-360 44-97 (157)
231 1rp3_A RNA polymerase sigma fa 25.1 88 0.003 26.9 5.1 27 298-324 202-228 (239)
232 1k8b_A EIF-2-beta, probable tr 24.8 1.3E+02 0.0043 20.7 4.7 39 300-343 12-50 (52)
233 1a17_A Serine/threonine protei 24.3 2.4E+02 0.0081 21.5 11.7 88 85-189 25-112 (166)
234 2q7f_A YRRB protein; TPR, prot 24.0 3E+02 0.01 22.5 15.0 49 86-143 138-186 (243)
235 3mq0_A Transcriptional repress 24.0 87 0.003 28.7 5.1 56 281-342 30-85 (275)
236 2jrt_A Uncharacterized protein 23.8 1.4E+02 0.0048 23.0 5.4 31 297-327 47-77 (95)
237 2v5f_A Prolyl 4-hydroxylase su 23.7 2.2E+02 0.0077 21.0 8.3 72 70-144 3-74 (104)
238 3upv_A Heat shock protein STI1 23.5 2.3E+02 0.0077 20.9 9.8 87 85-188 16-102 (126)
239 2yhc_A BAMD, UPF0169 lipoprote 23.4 3.3E+02 0.011 22.8 13.7 122 71-203 3-141 (225)
240 4esb_A Transcriptional regulat 23.1 2.7E+02 0.0093 21.7 8.9 78 298-379 21-105 (115)
241 1v54_E Cytochrome C oxidase po 22.6 2.8E+02 0.0097 22.1 7.0 32 73-104 45-76 (109)
242 1yz8_P Pituitary homeobox 2; D 21.6 1.3E+02 0.0043 21.2 4.5 36 286-321 17-52 (68)
243 2hng_A Hypothetical protein; a 21.4 1.2E+02 0.0042 24.8 4.7 49 328-376 68-116 (127)
244 3nau_A Zinc fingers and homeob 21.2 73 0.0025 23.2 3.0 38 284-321 16-53 (66)
245 3iuo_A ATP-dependent DNA helic 21.1 1.6E+02 0.0054 23.6 5.5 57 298-364 31-87 (122)
246 2d74_B Translation initiation 21.1 2.1E+02 0.0072 24.0 6.4 52 300-360 47-98 (148)
247 3n0r_A Response regulator; sig 21.0 4E+02 0.014 24.0 9.1 28 298-325 126-153 (286)
248 3urz_A Uncharacterized protein 20.9 3.6E+02 0.012 22.3 8.5 92 86-190 17-120 (208)
249 2e19_A Transcription factor 8; 20.9 95 0.0032 21.9 3.7 37 285-321 16-52 (64)
250 3n71_A Histone lysine methyltr 20.7 6.2E+02 0.021 25.0 12.9 96 55-151 328-428 (490)
251 2oa4_A SIR5; structure, struct 20.5 1.3E+02 0.0044 23.7 4.6 30 297-326 48-77 (101)
252 2k6x_A Sigma-A, RNA polymerase 20.4 1.8E+02 0.006 21.0 5.1 39 286-328 14-57 (72)
253 2o2a_A Hypothetical protein GB 20.3 1.3E+02 0.0044 24.8 4.6 49 328-376 67-115 (128)
254 1p4x_A Staphylococcal accessor 20.3 1.8E+02 0.0061 26.3 6.3 67 298-366 49-115 (250)
255 1xma_A Predicted transcription 20.3 3.1E+02 0.01 22.4 7.3 71 298-373 53-133 (145)
256 1gk7_A Vimentin; intermediate 20.2 1.2E+02 0.0041 19.6 3.6 23 352-374 5-27 (39)
257 1ig7_A Homeotic protein MSX-1; 20.1 81 0.0028 21.4 3.1 21 301-321 29-49 (58)
258 4fqn_A Malcavernin; helical do 20.1 2.4E+02 0.0083 22.0 5.9 63 3-66 18-91 (98)
No 1
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-79 Score=619.48 Aligned_cols=377 Identities=33% Similarity=0.590 Sum_probs=311.1
Q ss_pred cHHHHHHHHHhcC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhcCchhHHHHHHHHHHHHHhhcChHHHHHHHH
Q 043780 2 AALQYLESLRNDH-PELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAV 80 (386)
Q Consensus 2 ~~~~~L~~~~~~~-p~~~~~~~~~~~l~~~KLWhqLt~~l~~~~~~~~~~~~~~~~~ly~~fi~~f~~kin~l~l~~i~~ 80 (386)
|+..||++++.+. |++++.|++|+++|++|||||||.+|.+|+.+| .+++.+++||++||++|++|||||++|+|++
T Consensus 6 ~i~~~l~~~~~~~~~~l~~~~~~le~~~~~kLWhqlt~~L~~~~~~~--~~~~~~~~ly~~fi~~f~~kin~L~lv~~~~ 83 (393)
T 4b4t_O 6 EIDTILSTLRMEADPSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDA--KSTPLRLRLYDNFVSKFYDKINQLSVVKYLL 83 (393)
T ss_dssp HHHHHHHHHHCSSCSSCCSSHHHHHHHHCCSSCCSCCCTTHHHHCCC--SSCCCCHHHHHHHHHHHHHHSCSHHHHHTTH
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCh--hcchHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6789999999876 699999999999999999999999999999999 5678899999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhhhccc--------cCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCC
Q 043780 81 IVSRQYPEKQAAISYLEGVIEKLRATNE--------QRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDI 152 (386)
Q Consensus 81 ~v~~~~~d~~~al~fl~~~~~~~~~~~~--------~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v 152 (386)
.++++++|++++++||+++..++...+. ..+.+|.+++.+.+++.++..||+++|++.|++++..+++..++
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 9999999999999999999888754322 23458999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCC-CCCChhHHHHHHHHHHHHHhcCCCcccccccccChhhhccc
Q 043780 153 DPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSV-ESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIINSLT 231 (386)
Q Consensus 153 ~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~-~~~~~~e~~~~a~~l~i~AL~~~~iy~FgeLl~~p~v~~L~ 231 (386)
++.+|+.||.+++.||+.+++|+.+|++++.|++|++. ++++.+++..+|+.++++||.+|++|+||+|+.+|++++|+
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~ 243 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIV 243 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSC
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhh
Confidence 99999999999999999999999999999999998864 56788999999999999999999999999999999999995
Q ss_pred -CCCcHHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhhhhHHHHHHHHHHHHHHHHHhhCCCCCCccChHHHHHHcC
Q 043780 232 -GTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTK 310 (386)
Q Consensus 232 -~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~~~~~~l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~ 310 (386)
++++.|+++||.+|+.||+.+|.++.+.|. +..|.|..+...+++|||+++|++|||.+| .|.|||++|+++|+
T Consensus 244 ~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~---~~~~~l~~~~~~l~~kirll~l~~l~~~~~--~~~i~f~~ia~~l~ 318 (393)
T 4b4t_O 244 NDSNYDWLFQLLNALTVGDFDKFDSLIKVQI---SKIPILAQHESFLRQKICLMTLIETVFVKN--IRMLSFEDISKATH 318 (393)
T ss_dssp SSSSTTHHHHHHHHHHHTCHHHHHHHCCHHH---HHSHHHHHHHHHHHHHHHHHHHHHHHCSSS--CCCEEHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHhcCCHHHHHHHHHHhh---hhCcchhhhHHHHHHHHHHHHHHHHhccCC--CCcCcHHHHHHHhC
Confidence 578999999999999999999999875544 456888888999999999999999999775 68999999999999
Q ss_pred CChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 043780 311 LSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLVA 385 (386)
Q Consensus 311 i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~~~~~~l~~~~~~~~~ 385 (386)
||++|||.|||+||+.|+|+|+|||++|+|+|+|++||+|+++||+.|+++|..|+++|+++.+.|++++++|||
T Consensus 319 i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~~~~i~v 393 (393)
T 4b4t_O 319 LPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEARGQSIWV 393 (393)
T ss_dssp CCHHHHHHHHHHHHHHSCSSSCEETTTTEECC-------------------------------------------
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=2.9e-40 Score=295.28 Aligned_cols=145 Identities=21% Similarity=0.341 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhcCCCcccccccccChhhhcccCCCcHHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhhhhHHHHH
Q 043780 199 LDLAFDLSLSALLGDNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLL 278 (386)
Q Consensus 199 ~~~a~~l~i~AL~~~~iy~FgeLl~~p~v~~L~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~~~~~~l~ 278 (386)
.+.|++++++||.+|++|+|||||.||+|++|++++|+|+++||++|++||+++|.++. ++.|.|. +.++
T Consensus 23 ~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~-------~~~p~L~---~~~~ 92 (169)
T 3chm_A 23 SEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNA-------TRLPHLS---PDQI 92 (169)
T ss_dssp GGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHG-------GGSCCCC---HHHH
T ss_pred HHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhH-------HhCcchH---HHHH
Confidence 56799999999999999999999999999999999999999999999999999999873 2456665 5677
Q ss_pred HHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCC-hhHHHHHHH-HHhhccceEEeecCCCCEEEEEeeccccCChhhHH
Q 043780 279 EKINILCLMEIIFSRPSEDRTIPLSIIAERTKLS-IEDVEHLLM-KSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIK 356 (386)
Q Consensus 279 ~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~-~~eVE~lvi-kAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~ 356 (386)
+|||+|||++||++ +|++||++|+++|+|| .+|||+||| +||+.|||+|+|||++++|+|+|++||+|+++||.
T Consensus 93 ~KlrlLtL~sLa~~----~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~l~~~qi~ 168 (169)
T 3chm_A 93 LKLKQLTVLTLAES----NKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLG 168 (169)
T ss_dssp HHHHHHHHHHHHHH----CSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTTCCC----
T ss_pred HHHHHHHHHHHHHh----CCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCccCHHhcc
Confidence 99999999999996 6999999999999998 999999999 99999999999999999999999999999999996
Q ss_pred H
Q 043780 357 S 357 (386)
Q Consensus 357 ~ 357 (386)
.
T Consensus 169 ~ 169 (169)
T 3chm_A 169 N 169 (169)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.90 E-value=1.3e-21 Score=196.25 Aligned_cols=305 Identities=15% Similarity=0.148 Sum_probs=228.4
Q ss_pred chhHHHHHHHHHHHHHhh-cCh------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHH--HHHHH
Q 043780 52 GDALIQLYHNFITDFETK-INL------LKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILY--IKMQI 122 (386)
Q Consensus 52 ~~~~~~ly~~fi~~f~~k-in~------l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~--~~~~~ 122 (386)
.+..+++....|..-.+. -.= .+|+++.+ +..+..+|++.+.++...++. .++.... +.+..
T Consensus 75 ~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~----~~~~y~~a~~~i~~l~~~~~~-----~dd~~~llev~lle 145 (394)
T 3txn_A 75 TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYF----DTALYTEALALGAQLLRELKK-----LDDKNLLVEVQLLE 145 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHTT-----SSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHhc-----cccchhHHHHHHHH
Confidence 355667777666433322 111 24555443 455799999999999999963 2233433 34455
Q ss_pred HHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHH-HhhcHHHHHHHHHHHhccCCCCCCChhHHHHH
Q 043780 123 AMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHK-FHQEFAEFYKCALLYLAYTSVESLSDSFKLDL 201 (386)
Q Consensus 123 ~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k-~~~~~~~~y~~~l~yL~~~~~~~~~~~e~~~~ 201 (386)
.+++...|++..++..+..+....+... .+|.+.+.+...++-++- ..++|...+..-+.....++ +....++.+.
T Consensus 146 ~~~~~~~~n~~k~k~~l~~a~~~~~ai~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~--~~~~~~~~~~ 222 (394)
T 3txn_A 146 SKTYHALSNLPKARAALTSARTTANAIY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD--SVDSVKALTS 222 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT--TTCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhhccCC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc--ccccHHHHHH
Confidence 5666788999999999999887655432 579999999999999998 79999998888888665554 3345677889
Q ss_pred HHHHHHHHhcCCCcccccccccChhhhcccCCCcHHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhhhhHHHHHHHH
Q 043780 202 AFDLSLSALLGDNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKI 281 (386)
Q Consensus 202 a~~l~i~AL~~~~iy~FgeLl~~p~v~~L~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~~~~~~l~~Ki 281 (386)
+..+++++|.+.+.+++++++.+|......+++..|+.+|+.+|..|++..|.+.++.|++.+..+|.+..|...|+++|
T Consensus 223 lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I 302 (394)
T 3txn_A 223 LKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM 302 (394)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999976666778899999999999999999999999999888999998888889999999
Q ss_pred HHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHH
Q 043780 282 NILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDR 361 (386)
Q Consensus 282 rlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~ 361 (386)
|..+|..++. | .+.|+++.||+.+++|+++||.+|+++|..|.|.|+|||++|+|+++...+|. ...+..-+.
T Consensus 303 r~~~L~~i~~--p--YsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~---~~y~~ale~ 375 (394)
T 3txn_A 303 LEQNLCRIIE--P--YSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVD---KTYERVLET 375 (394)
T ss_dssp HHHHHHHHHT--T--CSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC----------------
T ss_pred HHHHHHHHhH--h--hceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchh---hHHHHHHHH
Confidence 9999999975 4 68899999999999999999999999999999999999999999999877665 334455578
Q ss_pred HHHHHHHHHHHHHH
Q 043780 362 LDSWLGKVHTALLS 375 (386)
Q Consensus 362 L~~W~~~v~~~~~~ 375 (386)
+..|...|+.+.+.
T Consensus 376 l~~ls~vVd~L~~~ 389 (394)
T 3txn_A 376 IQSMGKVVDTLYQK 389 (394)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 89999988877654
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.8e-16 Score=160.10 Aligned_cols=287 Identities=13% Similarity=0.067 Sum_probs=189.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCH
Q 043780 75 LAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDP 154 (386)
Q Consensus 75 l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~ 154 (386)
+...+..+-.+-++..+|.++|..+.-... ...+..--+-+.+...++++..+|+..++..+..+....... .-++
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~---~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~-~~~~ 214 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETY---GSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN-PKYE 214 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---SSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-SCCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc-CCcH
Confidence 334455555566688899999988765442 112222234455677888899999999999999886543322 2258
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHhcCCCcccccccccChhhhcccCCC
Q 043780 155 SVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIINSLTGTK 234 (386)
Q Consensus 155 ~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~~~~~~e~~~~a~~l~i~AL~~~~iy~FgeLl~~p~v~~L~~~~ 234 (386)
.+...||...+.++...++|.+.|++......+.+..+ +...+......++...+++|..-.++.++..+... -+.++
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~-d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~ 292 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS-DEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKK 292 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC-CHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccc
Confidence 89999999999999999999988887666554332211 13444555666777888888776677777643322 12345
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchh------hhhHHHHHHHHHHHHHHHHHhhCCCCCCccChHHHHHH
Q 043780 235 VEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPAL------VENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAER 308 (386)
Q Consensus 235 ~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L------~~~~~~l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~ 308 (386)
.+++..|+.+|..+++..|..+.+.+...+..+|.. ..+-..|++.++--.|..++. | .+.|+|+.||+.
T Consensus 293 l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k--~--Ys~I~l~~la~l 368 (445)
T 4b4t_P 293 LESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISE--Y--YSRITLLRLNEL 368 (445)
T ss_dssp HHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHH--H--EEEEEHHHHHHH
T ss_pred cHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHH--H--hceeeHHHHHHH
Confidence 678999999999999999999998888777766643 234455666666666665543 3 689999999999
Q ss_pred cCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043780 309 TKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETP 381 (386)
Q Consensus 309 l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~~~~~~l~~~~~ 381 (386)
+++|+++||.++.++|..|.|.|+|||++|+|++.+.++. .+.|..|.++++++.+.|+....
T Consensus 369 L~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~----------~~~l~~W~~~i~~l~~~v~k~~~ 431 (445)
T 4b4t_P 369 LDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNS----------SQLLNEWSHNVDELLEHIETIGH 431 (445)
T ss_dssp HTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC---------------------------------------
T ss_pred hCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCCh----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987654432 36799999999999999876553
No 5
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=5.6e-14 Score=142.33 Aligned_cols=304 Identities=16% Similarity=0.116 Sum_probs=206.4
Q ss_pred hhHHHHHHHHHHHHHhh-cC-------hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHH
Q 043780 53 DALIQLYHNFITDFETK-IN-------LLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAM 124 (386)
Q Consensus 53 ~~~~~ly~~fi~~f~~k-in-------~l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 124 (386)
+..++-++.-+...+.+ .+ -++++++-+. ++|.++|++.+.++..+.. +..-.+=+-+.+.+
T Consensus 107 ~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~------~~~~kid~~l~~ir 176 (429)
T 4b4t_R 107 ESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQ----IGDKDNAEKTLGKSLSKAI------STGAKIDVMLTIAR 176 (429)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHH----HCCCTTHHHHHHHHHHHHT------CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHH
Confidence 34566677777776653 33 3477777764 3467889999999888774 22233444455667
Q ss_pred HhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCCCCChhHHHHHHHH
Q 043780 125 FKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVESLSDSFKLDLAFD 204 (386)
Q Consensus 125 ~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~~~~~~e~~~~a~~ 204 (386)
+.+..+|...++..+..++..++... ++.....|....+.++-..++|....+..+.-+.+++.. ........|..
T Consensus 177 l~l~~~d~~~~~~~~~ka~~~~~~~~--d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~--e~~~~~~~~~y 252 (429)
T 4b4t_R 177 LGFFYNDQLYVKEKLEAVNSMIEKGG--DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI--ELTSYESIATY 252 (429)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTCC--CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS--CHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhhhcCC--CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCcc--chhhHHHHHHH
Confidence 77888999999999999987766532 466677666666666666788887777666555554433 35666778999
Q ss_pred HHHHHhcCCCccccc-ccccChhhhcc-cC-CCcHHHHHHHHHHhcCCHHHHHH-HHHHhhhhhhcCchhhhhHHHHHHH
Q 043780 205 LSLSALLGDNIYNFG-ELLAHPIINSL-TG-TKVEWLYYILQAFNSGDLVRYQE-LCRVHNAALRAQPALVENEKKLLEK 280 (386)
Q Consensus 205 l~i~AL~~~~iy~Fg-eLl~~p~v~~L-~~-~~~~~l~~LL~~f~~G~l~~f~~-~~~~~~~~~~~~~~L~~~~~~l~~K 280 (386)
++++++.+.+--++. .++..|.+... .. +...++.+++..|-.+++..|-. ....++..+..++.|..|-..+.+.
T Consensus 253 ~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ 332 (429)
T 4b4t_R 253 ASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVRE 332 (429)
T ss_dssp HHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHH
Confidence 999999987665543 35555655543 33 33567888999999999888754 4555566677788888888899999
Q ss_pred HHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHH
Q 043780 281 INILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRD 360 (386)
Q Consensus 281 irlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~ 360 (386)
||..++..++. | .+.|+++.+|+.+++|+++||.++.+.|..|-|.|+|||++|+|+++...+|.-.-+ ..-.
T Consensus 333 ir~~~l~q~~~--~--Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~---~~i~ 405 (429)
T 4b4t_R 333 MRRKVYAQLLE--S--YKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYH---LLVK 405 (429)
T ss_dssp HHHHHHHHHHH--T--CSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC----------------
T ss_pred HHHHHHHHHhH--H--hceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHH---HHHH
Confidence 99999999986 4 799999999999999999999999999999999999999999999998888753322 3333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043780 361 RLDSWLGKVHTALLSIE 377 (386)
Q Consensus 361 ~L~~W~~~v~~~~~~l~ 377 (386)
.-+.+-+++..+...|.
T Consensus 406 ~gd~Ll~riqkl~~~i~ 422 (429)
T 4b4t_R 406 QGDGLLTKLQKYGAAVR 422 (429)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444555555555554
No 6
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.1e-13 Score=131.69 Aligned_cols=288 Identities=13% Similarity=0.120 Sum_probs=206.4
Q ss_pred hhHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhccc
Q 043780 53 DALIQLYHNFITDFETKINL---LKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQ 129 (386)
Q Consensus 53 ~~~~~ly~~fi~~f~~kin~---l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~ 129 (386)
+..+++|...+.-....-+. .++..-+..+-.+.++..+|+++++++...... ..+....+-+-...++++...
T Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 112 DDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK---LDDKPSLVDVHLLESKVYHKL 188 (434)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---SSCSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHh
Confidence 45667777776655543332 223333444455566889999999988777642 223344555667788999999
Q ss_pred CChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCC-C-CChhHHHHHHHHHHH
Q 043780 130 GDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE-S-LSDSFKLDLAFDLSL 207 (386)
Q Consensus 130 ~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~-~-~~~~e~~~~a~~l~i 207 (386)
|+++.++..++.+........ .++...+.+|.....++...++|.+.+++....+.+++.. . .............++
T Consensus 189 ~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (434)
T 4b4t_Q 189 RNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLL 267 (434)
T ss_dssp TCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999988765433332 3578889999999999999999999888888877554321 1 113334444555566
Q ss_pred HHhcCCCcccccccccChhhhc-ccCCCcHHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhhhhHHHHHHHHHHHHH
Q 043780 208 SALLGDNIYNFGELLAHPIINS-LTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCL 286 (386)
Q Consensus 208 ~AL~~~~iy~FgeLl~~p~v~~-L~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~~~~~~l~~KirlLaL 286 (386)
..+.++..-....++..+.... ..+++..++..+..+|..+++..|......+...+..++.+..+...+.+.++...+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 347 (434)
T 4b4t_Q 268 SKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNL 347 (434)
T ss_dssp HHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 6666554433333333222221 233456788899999999999999999999888888888777777778889999999
Q ss_pred HHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc
Q 043780 287 MEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR 348 (386)
Q Consensus 287 ~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R 348 (386)
..++. | .+.|+++.|++.+++++++||.++.++|..|.|.|+|||++|+|.+....++
T Consensus 348 ~~~~~--~--y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~ 405 (434)
T 4b4t_Q 348 CKIIE--P--FECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQ 405 (434)
T ss_dssp HHHHS--S--CSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC-----
T ss_pred HHHHH--H--HHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcch
Confidence 98864 3 6889999999999999999999999999999999999999999998765544
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.37 E-value=9.4e-12 Score=114.02 Aligned_cols=179 Identities=16% Similarity=0.175 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHhcCCCcccccccccChhhhcccC
Q 043780 153 DPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIINSLTG 232 (386)
Q Consensus 153 ~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~~~~~~e~~~~a~~l~i~AL~~~~iy~FgeLl~~p~v~~L~~ 232 (386)
+..-...|++..+.++=..++|.+.+.+....+..++.+ +...++.....++...|+...+=.+ ..++.
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~--~~~~k~~IL~yLIp~~Ll~G~iP~~---------~ll~~ 77 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS--SQKNKRMILIYLLPVKMLLGHMPTV---------ELLKK 77 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHHHTTCEECH---------HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh--HHHHHHHHHHHHHHHHHHcCCCCCH---------HHhhh
Confidence 344556788888888888899999999988888666543 3667777888888888877554333 22222
Q ss_pred CCcHHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhhhhHHHHHHHHHHHHHHHHHhhCC--CCCCccChHHHHHHcC
Q 043780 233 TKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRP--SEDRTIPLSIIAERTK 310 (386)
Q Consensus 233 ~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~~~~~~l~~KirlLaL~~L~~~r~--~~~r~isf~~Ia~~l~ 310 (386)
.+...+.+|..++..||+..|++.+++|.+.|.+.+.. .+.+|+|.+++.+++-+-- .....||+++|+.+++
T Consensus 78 ~~~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~-----lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~ 152 (203)
T 3t5x_A 78 YHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIF-----LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALK 152 (203)
T ss_dssp TTCGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCH-----HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHH
T ss_pred CchhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChH-----HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 22234678999999999999999999998887766532 3448999998888754200 0146899999999996
Q ss_pred ------CChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 311 ------LSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 311 ------i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
++.+|||.+|.++|..|+|+|+||+.++++.++...|
T Consensus 153 ~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~p 195 (203)
T 3t5x_A 153 FMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNP 195 (203)
T ss_dssp HTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCS
T ss_pred hcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCC
Confidence 4789999999999999999999999999999987654
No 8
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=5.3e-11 Score=122.34 Aligned_cols=218 Identities=15% Similarity=0.158 Sum_probs=155.6
Q ss_pred CchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCC
Q 043780 112 EEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 112 ~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
.+...-+...+-+.||..++++.|.+.+..... +.. .+.....++|++..+..+-.+++|.+.+.+....+..+|.+
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Ccc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 344444455778889999999999999998863 221 24567788999999999999999999998888888766665
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCcccccccccChhhhcccCCCcHHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhh
Q 043780 192 SLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALV 271 (386)
Q Consensus 192 ~~~~~e~~~~a~~l~i~AL~~~~iy~FgeLl~~p~v~~L~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~ 271 (386)
....+.++..-..+++..|+...+-.. .++..|.++. ...++++|..+|..||+..|.+.+++|...|.+++...
T Consensus 304 ~~a~gfr~~a~K~lI~V~LLlG~iP~r-~lf~q~~l~~----~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~ 378 (523)
T 4b4t_S 304 SKSLGFLQQSNKLHCCIQLLMGDIPEL-SFFHQSNMQK----SLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQ 378 (523)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHTCCCCH-HHHTTTSCHH----HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTH
T ss_pred hhhhhHHHHHHHHHHhHHhhcCCCCCh-HHhhchhHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhH
Confidence 555666766555666666654333221 1222222211 13558899999999999999999999999888877421
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCC-hhHHHHHHHHHhhccceEEeecCCCCEEEE
Q 043780 272 ENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLS-IEDVEHLLMKSLSVHLIEGIIDQVEGTVHV 342 (386)
Q Consensus 272 ~~~~~l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~-~~eVE~lvikAi~~gLI~G~IDqv~~~v~v 342 (386)
|..++|....-...-+-......||+++|+..++++ ++++|.+|-++|..|.|+|+|||.+|.|..
T Consensus 379 -----LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~s 445 (523)
T 4b4t_S 379 -----LCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIET 445 (523)
T ss_dssp -----HHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEEC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEe
Confidence 223333332222211111235689999999999995 789999999999999999999999997764
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.31 E-value=5.7e-11 Score=121.03 Aligned_cols=224 Identities=12% Similarity=0.117 Sum_probs=167.7
Q ss_pred CchHHHHHHHHHHHhcccCChHHHHHHHHhcccc--ccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhcc-C
Q 043780 112 EEPILYIKMQIAMFKLEQGDRKECKKLLEDGKST--LDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAY-T 188 (386)
Q Consensus 112 ~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~--l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~-~ 188 (386)
+.+.+|+-.....+|.+.|.+.-|+.++..++.. ++..+..+..-...|++..+.++=..++|.+.+.+....+.. +
T Consensus 172 k~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lc 251 (455)
T 3t5v_B 172 QRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLL 251 (455)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcC
Confidence 3456676667778899999999999999988764 234555566677788888999988899999999998887765 4
Q ss_pred CCCCC---ChhHHHHHHHHHHHHHhcCCCcccccccccChhhhcccCCCcHH-HHHHHHHHhcCCHHHHHHHHHHhhhhh
Q 043780 189 SVESL---SDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIINSLTGTKVEW-LYYILQAFNSGDLVRYQELCRVHNAAL 264 (386)
Q Consensus 189 ~~~~~---~~~e~~~~a~~l~i~AL~~~~iy~FgeLl~~p~v~~L~~~~~~~-l~~LL~~f~~G~l~~f~~~~~~~~~~~ 264 (386)
+.+.- ....++.....++...|+...+-+ -.++..|.. +.... ...|..++..||+..|++.+++|...|
T Consensus 252 p~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~-~~ll~k~~~-----~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f 325 (455)
T 3t5v_B 252 NLPLTNQAITRNGTRILNYMIPTGLILGKMVK-WGPLRPFLS-----QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHL 325 (455)
T ss_dssp HCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBC-HHHHGGGSC-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred CccccchhhhhHHHHHHHHHHHHHHHcCCCCC-HHHHcccch-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHH
Confidence 43311 145566667777777776643322 234433321 12233 567999999999999999999999888
Q ss_pred hcCchhhhhHHHHHHHHHHHHHHHHHh------hCCCCCCccChHHHHHHcC---------------------CChhHHH
Q 043780 265 RAQPALVENEKKLLEKINILCLMEIIF------SRPSEDRTIPLSIIAERTK---------------------LSIEDVE 317 (386)
Q Consensus 265 ~~~~~L~~~~~~l~~KirlLaL~~L~~------~r~~~~r~isf~~Ia~~l~---------------------i~~~eVE 317 (386)
-+.+.| -.+.+|+|.+++-+++- ..+.+...||+++|+.+++ ++.+|||
T Consensus 326 ~~~gil----y~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devE 401 (455)
T 3t5v_B 326 CARQLL----IVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVE 401 (455)
T ss_dssp HHTTCH----HHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHH
T ss_pred HHcCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHH
Confidence 777642 24558888886666543 3343346899999999998 5788999
Q ss_pred HHHHHHhhccceEEeecCCCCEEEEEee
Q 043780 318 HLLMKSLSVHLIEGIIDQVEGTVHVSWV 345 (386)
Q Consensus 318 ~lvikAi~~gLI~G~IDqv~~~v~vt~v 345 (386)
-+|.++|..|+|+|+||+.++++.++..
T Consensus 402 cIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 402 NVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred HHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 9999999999999999999999999876
No 10
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.02 E-value=9.2e-06 Score=63.78 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=47.5
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
...|+++.+|+.+++|+++||.++.+.|..|-+.|+|||++++|.++...|
T Consensus 28 Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 28 YNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred cCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 789999999999999999999999999999999999999999998865433
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.00 E-value=0.012 Score=54.18 Aligned_cols=184 Identities=19% Similarity=0.118 Sum_probs=105.9
Q ss_pred ccCChHHHHHHHHhccccccccCC----CC---HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCCCCC-hhHHH
Q 043780 128 EQGDRKECKKLLEDGKSTLDSMTD----ID---PSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVESLS-DSFKL 199 (386)
Q Consensus 128 ~~~~l~~~~~~l~~~~~~l~~~~~----v~---~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~~~~-~~e~~ 199 (386)
..+|++.|.++|..++..|-.... .+ ..+.+..|...+...=..+|..+ |.....-|..+..+.++ .+.+.
T Consensus 19 ~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~-F~~~~~qLk~~Y~~~~~~s~~~~ 97 (229)
T 4b0z_A 19 DRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIES-FARYASQVIPFYHDSLVPSSRMG 97 (229)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHSSCCCCCTTHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHccCCCCccHH
Confidence 468999999999988754322111 11 12344566666655434455443 33333333322222222 22233
Q ss_pred H-HHHHHHHHHhcCCCccccccccc-ChhhhcccCCC-cHHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhhhhHHH
Q 043780 200 D-LAFDLSLSALLGDNIYNFGELLA-HPIINSLTGTK-VEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKK 276 (386)
Q Consensus 200 ~-~a~~l~i~AL~~~~iy~FgeLl~-~p~v~~L~~~~-~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~~~~~~ 276 (386)
+ .++.+... |...++-.|.-.+. .|.-..+++.+ -....++-.++..|++..|-+..++.+. |....-.+.
T Consensus 98 e~~~~~LL~l-L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~-----~~~~~~~~~ 171 (229)
T 4b0z_A 98 LVTGLNLLYL-LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNF-----PEFSYFMKI 171 (229)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-----GGGHHHHHH
T ss_pred HHHHHHHHHH-HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCcc-----chHHHHHHH
Confidence 3 56666554 44445655542222 22111122222 2456788899999999999888764321 111112344
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCccChHHHHHHcCC-ChhHHHHHHHH
Q 043780 277 LLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKL-SIEDVEHLLMK 322 (386)
Q Consensus 277 l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i-~~~eVE~lvik 322 (386)
+..++|.-++-.++.+ ...||.+++++.|++ +++|++.++-+
T Consensus 172 l~~~vR~~~l~~i~ka----Y~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 172 VMSMVRNEIATCAEKV----YSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHH----CSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----cCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 5678888887777654 468999999999999 57899999887
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.48 E-value=3.1 Score=32.51 Aligned_cols=127 Identities=7% Similarity=-0.135 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHH---HHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCC
Q 043780 55 LIQLYHNFITDFETKINLLKLAHFAVI---VSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGD 131 (386)
Q Consensus 55 ~~~ly~~fi~~f~~kin~l~l~~i~~~---v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~ 131 (386)
-++.|...+.-+...-++...+.+... +.....+.++|++++++..+.... ..+......+....+.++...|+
T Consensus 28 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~ 104 (164)
T 3ro3_A 28 AVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQD 104 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHHHHhh
Confidence 455566665555554444443333333 233456899999999987766631 12223334555677888889999
Q ss_pred hHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 043780 132 RKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 186 (386)
Q Consensus 132 l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~ 186 (386)
++++...++++-....... ++...+..|...+..+...|++.+.....-+.+.
T Consensus 105 ~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 105 YEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998887765443322 2444455555666677778887766555555443
No 13
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=90.85 E-value=8.4 Score=34.85 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=61.4
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSS 165 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s 165 (386)
..+.++|++++++..+... ...+....+.+-..+|.++...|+++++....+++-...+...+ +....+..|.-.+
T Consensus 128 ~~~~~~Ai~~~~~al~~~~---~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg 203 (293)
T 3u3w_A 128 KVDYEYCILELKKLLNQQL---TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHA 203 (293)
T ss_dssp SSCHHHHHHHHHHHHHTCC---CCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHH
Confidence 3478999999998766321 11222233445677888999999999999888877655444433 3455554555555
Q ss_pred HHHHHhhcHHHHHHHHHHHh
Q 043780 166 QYHKFHQEFAEFYKCALLYL 185 (386)
Q Consensus 166 ~~~k~~~~~~~~y~~~l~yL 185 (386)
..|...|+|.+.-...-+.+
T Consensus 204 ~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 204 KALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 56666788776555444444
No 14
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=90.53 E-value=0.69 Score=34.69 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=44.5
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEE
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVS 343 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt 343 (386)
++.++.+++|.+++++..++-.-|-.....|.+.|-||.-.+-++||
T Consensus 19 ~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 19 SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 58999999999999999999999999999999999999999999987
No 15
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=90.21 E-value=2.5 Score=33.29 Aligned_cols=69 Identities=10% Similarity=0.018 Sum_probs=53.8
Q ss_pred CccChHHHHHHc-CCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERT-KLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKV 369 (386)
Q Consensus 298 r~isf~~Ia~~l-~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v 369 (386)
+.++|.+|++.+ +++..-|=..+=+....|+|+.+.+..++....-..+++- . ++......+..|.+..
T Consensus 26 ~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G--~-~l~~~~~~l~~w~~~~ 95 (107)
T 2hzt_A 26 GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYG--R-SLEGILDMLXAWGANH 95 (107)
T ss_dssp CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTG--G-GGHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccH--H-HHHHHHHHHHHHHHHh
Confidence 568999999999 9999999999999999999999999887766666666642 2 3334456667776653
No 16
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=88.70 E-value=13 Score=33.45 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=59.0
Q ss_pred hcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHH
Q 043780 84 RQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWV 163 (386)
Q Consensus 84 ~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~ 163 (386)
....+.++|++++++..+... ...+......+-..+|.++...|+++++....+++-...+...+ ++......|.-
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~n 201 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQL---TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYN 201 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCC---CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHh
Confidence 344589999999987654432 11222223445567888999999999999988877543333222 24444334444
Q ss_pred HHHHHHHhhcHHHHHHHHHHHh
Q 043780 164 SSQYHKFHQEFAEFYKCALLYL 185 (386)
Q Consensus 164 ~s~~~k~~~~~~~~y~~~l~yL 185 (386)
.+..|...|+|.+.....-+.+
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 4555556787776544444443
No 17
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=87.55 E-value=7.9 Score=30.01 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=62.6
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...++++|++.+++..+.... ..+......+...++.++...|+++++.+.++++-...+... ++...+..|...
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l 95 (164)
T 3ro3_A 21 LLGNFRDAVIAHEQRLLIAKE---FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSL 95 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHH
Confidence 355899999999887766531 123334445667788899999999999998888765544332 244445455555
Q ss_pred HHHHHHhhcHHHHHHHHHHHh
Q 043780 165 SQYHKFHQEFAEFYKCALLYL 185 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL 185 (386)
+..+...|++.+.....-+.+
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 666666777776555444444
No 18
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=87.43 E-value=10 Score=33.35 Aligned_cols=128 Identities=7% Similarity=-0.118 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCC
Q 043780 55 LIQLYHNFITDFETKINLLKLAHFAVIVS---RQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGD 131 (386)
Q Consensus 55 ~~~ly~~fi~~f~~kin~l~l~~i~~~v~---~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~ 131 (386)
-++.|+..+.-....-++-..+......+ ....++++|++++++..+.... ..+......+....+.++...|+
T Consensus 202 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 202 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHHHHHhcC
Confidence 44555555555444444333333322222 2234667777777665544421 01112223344455666667777
Q ss_pred hHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q 043780 132 RKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAY 187 (386)
Q Consensus 132 l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~ 187 (386)
++++...++++-...+... ++......|...+..+...|++.+.....-+.+..
T Consensus 279 ~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7777777666544333222 13333444445555566666666655555555543
No 19
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=86.20 E-value=8.1 Score=31.10 Aligned_cols=77 Identities=17% Similarity=0.068 Sum_probs=55.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc---------------------cCChhhHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR---------------------VLGIPQIK 356 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R---------------------~l~~~q~~ 356 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++. .++.++.+
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~ 121 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEIS 121 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 469999999999999999999999999999999988877665444334422 35555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043780 357 SLRDRLDSWLGKVHTALL 374 (386)
Q Consensus 357 ~L~~~L~~W~~~v~~~~~ 374 (386)
.+..-|....+++.....
T Consensus 122 ~l~~~l~~l~~~l~~~~~ 139 (144)
T 1lj9_A 122 QLADYLVRMRKNVSEDWE 139 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 555555555555544433
No 20
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=85.30 E-value=19 Score=33.04 Aligned_cols=130 Identities=7% Similarity=-0.122 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHH---HHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccC
Q 043780 54 ALIQLYHNFITDFETKINLLKLAHFAVI---VSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQG 130 (386)
Q Consensus 54 ~~~~ly~~fi~~f~~kin~l~l~~i~~~---v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~ 130 (386)
.-++.|+..+.-+...-++...+..... +.....+.++|++++++..+.... ..+......+...++.++...|
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh---CcCchHHHHHHHHHHHHHHHhC
Confidence 3456666666666654444443333332 223456788888888776655431 1122223445556677888888
Q ss_pred ChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q 043780 131 DRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYT 188 (386)
Q Consensus 131 ~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~ 188 (386)
+++++...++++-...+... ++......|...+..|...|++.+.....-+.+...
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELN--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88888888877655433322 234445555566666767788777666666655443
No 21
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=84.93 E-value=10 Score=29.97 Aligned_cols=70 Identities=9% Similarity=-0.099 Sum_probs=51.8
Q ss_pred CccChHHHHHHc-CCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERT-KLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVH 370 (386)
Q Consensus 298 r~isf~~Ia~~l-~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~ 370 (386)
+.+++.+|++.+ +++..-|-..|=+....|+|+..-+..++....-..++.- .++......+..|.....
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G---~~~~~~~~~l~~w~~~~~ 104 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEG---YALYDALSSLCHWGETFA 104 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhH---HHHHHHHHHHHHHHHHHH
Confidence 358999999999 9999999999999999999999998877766555555531 223333345566665543
No 22
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=84.49 E-value=16 Score=30.07 Aligned_cols=130 Identities=12% Similarity=-0.024 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHH---HHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCC
Q 043780 55 LIQLYHNFITDFETKINLLKLAHFAV---IVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGD 131 (386)
Q Consensus 55 ~~~ly~~fi~~f~~kin~l~l~~i~~---~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~ 131 (386)
-++.|+.-+.-+...=++-..+.... .+.....+.++|++++++..+..... +........+...++.++...|+
T Consensus 45 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~ 122 (203)
T 3gw4_A 45 ARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL--PEDPLAASANAYEVATVALHFGD 122 (203)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHHHhCC
Confidence 45666666665554333433333332 23334668999999998877766411 11222445566778888899999
Q ss_pred hHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q 043780 132 RKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYT 188 (386)
Q Consensus 132 l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~ 188 (386)
++++...+++.-....... ++...+..+...+..+...|++.+.....-+.+...
T Consensus 123 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 123 LAGARQEYEKSLVYAQQAD--DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 9999999887755433322 345555556666777777888887665555555443
No 23
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=84.22 E-value=8.8 Score=29.09 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=46.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWL 366 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~ 366 (386)
..++..+|++.++++...|-..+=+....|+|...-+. ++.....+..+. +.+-+..+...+..|.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~-~~r~~~~~~t~~--g~~~~~~~~~~~~~~~ 98 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE-KGWVGYIYSAEK--PEKVLKEFKSSILGEI 98 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE-SSSEEEEEEECC--HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec-CCceEEEEecCc--HHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999998776 554444333332 1233344444444443
No 24
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=83.74 E-value=12 Score=29.82 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=42.7
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~ 91 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTR 91 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECH
Confidence 56899999999999999999999999999999998888777655544443
No 25
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=83.73 E-value=7.4 Score=29.32 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=34.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecC
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQ 335 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDq 335 (386)
..+++.+|++.++++...|-..+=+....|+|...-+.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 46999999999999999999999999999999976644
No 26
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=83.53 E-value=5 Score=32.49 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=57.9
Q ss_pred cChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCC--CEEEEEeeccccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043780 300 IPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVE--GTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIE 377 (386)
Q Consensus 300 isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~--~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~~~~~~l~ 377 (386)
+|-.+||+.++++...|-..|=+....|+|...-+..+ +..++-...+ ..+-...+...+..|.+.+...++.+.
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~---~~~~~~~i~~~~~~~~~~~~~~l~~~~ 119 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYS---KNQIRNIIQKIVQSWADRLGQELKEWE 119 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECC---HHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCC---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998655443 2333332323 234467889999999999988776554
Q ss_pred h
Q 043780 378 A 378 (386)
Q Consensus 378 ~ 378 (386)
+
T Consensus 120 ~ 120 (123)
T 3r0a_A 120 N 120 (123)
T ss_dssp C
T ss_pred c
Confidence 3
No 27
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=83.22 E-value=17 Score=31.85 Aligned_cols=127 Identities=9% Similarity=-0.009 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHH---HhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCC
Q 043780 55 LIQLYHNFITDFETKINLLKLAHFAVIV---SRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGD 131 (386)
Q Consensus 55 ~~~ly~~fi~~f~~kin~l~l~~i~~~v---~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~ 131 (386)
-++.|+..+.-+...-++...+.+.... .....+.++|++.+++..+.... ..+......+....+.++...|+
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHcCC
Confidence 3445555444444333343333333332 23345899999999887665531 12233345566777888889999
Q ss_pred hHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 043780 132 RKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 186 (386)
Q Consensus 132 l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~ 186 (386)
++++.+.++++-...+... ++......+...+..+...|++.+.....-..+.
T Consensus 239 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999988765544332 2444455555666667778887765555444443
No 28
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=83.03 E-value=5.1 Score=31.60 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=48.7
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGK 368 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~ 368 (386)
+.+++.+|++.++++...|-..+=.....|+|+.+-+.. .+.. .++.+.+..+...|..|...
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr--~~~y------~l~~~~~~~l~~~l~~~~~~ 99 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT--RQYY------RIAGEDVARLFALVQVVADE 99 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT--EEEE------EESCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC--EEEE------EEChHHHHHHHHHHHHHhhH
Confidence 568999999999999999999999999999999875432 2221 23456688888888888643
No 29
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=82.70 E-value=3.8 Score=33.19 Aligned_cols=43 Identities=21% Similarity=0.178 Sum_probs=38.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEE
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTV 340 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v 340 (386)
+.++..+||+.++++..-|=..|=+....|+|...-|..++..
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~ 82 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKN 82 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceE
Confidence 4699999999999999999999999999999999887766543
No 30
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=82.55 E-value=18 Score=31.09 Aligned_cols=129 Identities=13% Similarity=0.095 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHhhc--ChHHHHHHH---HHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcc
Q 043780 54 ALIQLYHNFITDFETKI--NLLKLAHFA---VIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLE 128 (386)
Q Consensus 54 ~~~~ly~~fi~~f~~ki--n~l~l~~i~---~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~ 128 (386)
.-+++|+.-+.-+.... ++-..+.+. ..+.....+.++|++++++..+....... .+......+....+.++..
T Consensus 19 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp SHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHH
Confidence 45666666666665443 322233332 23333456899999999887665431100 1223345556677888999
Q ss_pred cCChHHHHHHHHhccccccccCCC-CHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 043780 129 QGDRKECKKLLEDGKSTLDSMTDI-DPSVYANYYWVSSQYHKFHQEFAEFYKCALLY 184 (386)
Q Consensus 129 ~~~l~~~~~~l~~~~~~l~~~~~v-~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~y 184 (386)
.|+++++...+.++-.......+- ++..... |...+..+...|++.+.....-+.
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ-LNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999888776543322111 2333333 444455555677766544443333
No 31
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=82.28 E-value=15 Score=28.37 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=33.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIID 334 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ID 334 (386)
+.++..+|++.++++...|-..+=+....|+|...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 3589999999999999999999999999999987655
No 32
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=82.13 E-value=11 Score=28.57 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=49.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCC---EEEEEeeccccCChhhHHHHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEG---TVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVH 370 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~---~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~ 370 (386)
..++..+||+.++++..-|-..+=+....|+|...-+..++ ........ .+-++.+...+..|.+.+.
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~-----~~~~~~~~~~~~~~~~~~~ 105 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSIS-----SNILEKIRNDLLNCAKRME 105 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEEC-----TTHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecC-----HHHHHHHHHHHHHHHHHHh
Confidence 56999999999999999999999999999999987654442 12222222 2566777777888877654
No 33
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=81.89 E-value=8.2 Score=31.07 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=40.9
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
..++..+||+.++++...|-..|=+....|+|.-.-|..++....-..+
T Consensus 49 ~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT 97 (146)
T 2gxg_A 49 GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEIT 97 (146)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEEC
Confidence 4699999999999999999999999999999999888766654443344
No 34
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=81.47 E-value=9 Score=30.79 Aligned_cols=50 Identities=6% Similarity=-0.058 Sum_probs=42.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~ 95 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITR 95 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECH
Confidence 46999999999999999999999999999999999888777665544443
No 35
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=81.43 E-value=5.1 Score=32.04 Aligned_cols=73 Identities=8% Similarity=0.031 Sum_probs=45.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHH----HHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLD----SWLGKVHTAL 373 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~----~W~~~v~~~~ 373 (386)
+.++..+|++.++++...|-..+-.....|+|..+-+.......+ +++.+..+..-+. .|......+.
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l--------~~~~~~~l~~~~~~~~~~~~~~l~~l~ 101 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAI--------EKEPFTAVEAWLAEQQELWESRTDRLE 101 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE--------CSHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEE--------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999877742222222 3455555544443 4555545554
Q ss_pred HHHHh
Q 043780 374 LSIEA 378 (386)
Q Consensus 374 ~~l~~ 378 (386)
..++.
T Consensus 102 ~~l~~ 106 (118)
T 3f6o_A 102 QFVTE 106 (118)
T ss_dssp -----
T ss_pred HHHhc
Confidence 44443
No 36
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=80.85 E-value=28 Score=30.41 Aligned_cols=132 Identities=10% Similarity=-0.013 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHhh--cChHHHHH---HHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcc
Q 043780 54 ALIQLYHNFITDFETK--INLLKLAH---FAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLE 128 (386)
Q Consensus 54 ~~~~ly~~fi~~f~~k--in~l~l~~---i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~ 128 (386)
.-++.|...+..+... -++-..+. .+..+.....+.++|++++++..+..... ...+......+....+.++..
T Consensus 87 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~la~~~~~ 165 (311)
T 3nf1_A 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-LGKDHPDVAKQLNNLALLCQN 165 (311)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHH
Confidence 4567777777666443 11122222 22334445668999999998876654211 001222345556677888999
Q ss_pred cCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 043780 129 QGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 186 (386)
Q Consensus 129 ~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~ 186 (386)
.|+++++...++++-.......+-+.......+...+..+...|++.+.....-+.+.
T Consensus 166 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 166 QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999998887765433321112223334444455556667777765555555443
No 37
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=80.61 E-value=11 Score=29.44 Aligned_cols=67 Identities=12% Similarity=-0.064 Sum_probs=50.6
Q ss_pred CccChHHHHHHcC-CChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTK-LSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLG 367 (386)
Q Consensus 298 r~isf~~Ia~~l~-i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~ 367 (386)
+.++|.+|++.++ ++..-|-..+=+.-..|+|+.+.+..++....-..++.- .+ +...-..+..|.+
T Consensus 37 ~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G--~~-l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 37 RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLG--EK-VLPIIDEIAKFGM 104 (107)
T ss_dssp SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH--HT-THHHHHHHHHHHH
T ss_pred CCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccH--HH-HHHHHHHHHHHHH
Confidence 5699999999995 999999999999999999999998877766555565542 22 2233346677764
No 38
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=80.15 E-value=30 Score=32.02 Aligned_cols=99 Identities=12% Similarity=0.009 Sum_probs=65.1
Q ss_pred HhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHH
Q 043780 83 SRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYW 162 (386)
Q Consensus 83 ~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~ 162 (386)
.....+.++|++.+++..+.... .........+....+.++...|+++++...++++-....... ++......|.
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~ 307 (411)
T 4a1s_A 233 YYLLGDFQAAIEHHQERLRIARE---FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG--EREVEAQSCY 307 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 33456899999999887665531 122234445667788899999999999999988765544332 2444455556
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHhc
Q 043780 163 VSSQYHKFHQEFAEFYKCALLYLA 186 (386)
Q Consensus 163 ~~s~~~k~~~~~~~~y~~~l~yL~ 186 (386)
..+..+...|++.+.....-+.+.
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 308 SLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666677778887765555544443
No 39
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=79.27 E-value=14 Score=30.57 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=58.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc---------------------cCChhhHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR---------------------VLGIPQIK 356 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R---------------------~l~~~q~~ 356 (386)
..++-.+||+.++++...|=..|=+....|+|.=.-|..++....-..+|. .|+.++.+
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~ 124 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGVISSTRKEILGGISSDEIA 124 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 356678999999999999999999999999999999999987776666654 35556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043780 357 SLRDRLDSWLGKVHTALLSIE 377 (386)
Q Consensus 357 ~L~~~L~~W~~~v~~~~~~l~ 377 (386)
.+..-|....+++..+...+|
T Consensus 125 ~l~~~L~kl~~nl~~l~~k~E 145 (151)
T 4aik_A 125 VLSGLIDKLEKNIIQLQTKLE 145 (151)
T ss_dssp HHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 666655555555555544444
No 40
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=79.09 E-value=12 Score=30.58 Aligned_cols=75 Identities=8% Similarity=0.047 Sum_probs=51.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc------------------cCChhhHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR------------------VLGIPQIKSLR 359 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R------------------~l~~~q~~~L~ 359 (386)
..++..+||+.++++...|=..|=+....|+|.-.-|..++....-..++. .|+.++.+.+.
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~l~~~e~~~l~ 133 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAISSCLPQEFDTTEYDETK 133 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHHHHHTTSCTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 578999999999999999999999999999999988887776655555532 35666666666
Q ss_pred HHHHHHHHHHHHH
Q 043780 360 DRLDSWLGKVHTA 372 (386)
Q Consensus 360 ~~L~~W~~~v~~~ 372 (386)
.-|....++++.+
T Consensus 134 ~~l~~l~~~l~~~ 146 (149)
T 4hbl_A 134 YVFEELEQTLKHL 146 (149)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
No 41
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.07 E-value=14 Score=34.53 Aligned_cols=184 Identities=20% Similarity=0.110 Sum_probs=82.2
Q ss_pred cCChHHHHHHHHhccccccccCCCCH-------------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhcc-CCC-CCC
Q 043780 129 QGDRKECKKLLEDGKSTLDSMTDIDP-------------SVYANYYWVSSQYHKFHQEFAEFYKCALLYLAY-TSV-ESL 193 (386)
Q Consensus 129 ~~~l~~~~~~l~~~~~~l~~~~~v~~-------------~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~-~~~-~~~ 193 (386)
.+|++.|.++|..++..|-...-++| .+.+..|-..+.+.=..+|..+|-++--.--.+ .+. +.+
T Consensus 17 ~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l 96 (274)
T 4b4t_T 17 NGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKL 96 (274)
T ss_dssp --------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCS
T ss_pred ccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccC
Confidence 46788888888877755422222111 122223333333322245655544433221111 221 223
Q ss_pred Chh-HH-HHHHHHHHHHHhcCCCccccc-ccccChhh-hcccCCC-cHHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCc
Q 043780 194 SDS-FK-LDLAFDLSLSALLGDNIYNFG-ELLAHPII-NSLTGTK-VEWLYYILQAFNSGDLVRYQELCRVHNAALRAQP 268 (386)
Q Consensus 194 ~~~-e~-~~~a~~l~i~AL~~~~iy~Fg-eLl~~p~v-~~L~~~~-~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~ 268 (386)
+.+ .+ .=.++++..- |...++-.|. +|-..|.. ..+++.+ -..-.++-.++..|++..|-+...+.+ .|
T Consensus 97 ~~s~~~~e~~~~~LLyl-L~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~-----~p 170 (274)
T 4b4t_T 97 SESDKKSKLISLYLLNL-LSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGS-----QN 170 (274)
T ss_dssp SCSHHHHHHHHHHHHHH-HHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCT-----TC
T ss_pred CCCccHHHHHHHHHHHH-HHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCC-----CC
Confidence 322 22 2256665532 3333344553 23233322 2233222 244567888999999999877765321 12
Q ss_pred h-h-hhhHHHHHHHHHHHHHHHHHhhCCCCCCccChHHHHHHcCC-ChhHHHHHHHH
Q 043780 269 A-L-VENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKL-SIEDVEHLLMK 322 (386)
Q Consensus 269 ~-L-~~~~~~l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i-~~~eVE~lvik 322 (386)
. + .--.+.+..++|.-++-.++.+ .+.+|.+++++.|+. +++|+..++-+
T Consensus 171 ~~~~~~f~d~l~~~iR~~a~~~i~ka----Y~~i~l~~~~~~L~F~s~~e~~~F~~~ 223 (274)
T 4b4t_T 171 ISEFDSFTDILKSAIRDEIAKNTELS----YDFLPLSNIKALLFFNNEKETEKFALE 223 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----CSSCCHHHHHHHHTCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 1 0 1113345588998888888764 578999999999999 57889888865
No 42
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=78.49 E-value=13 Score=30.67 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=40.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+||+.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~ 112 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTE 112 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECH
Confidence 56899999999999999999999999999999999988887665555554
No 43
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=78.45 E-value=5 Score=34.52 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+..+|+.+||+.++++...|-..+-+....|+|++.
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 356999999999999999999999999999999874
No 44
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=78.22 E-value=11 Score=30.91 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCccChHHHHHHc-CCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhH
Q 043780 277 LLEKINILCLMEIIFSRPSEDRTIPLSIIAERT-KLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQI 355 (386)
Q Consensus 277 l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l-~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~ 355 (386)
+-.+.+++.|..|. .+.++|.+|++.+ +|+..-+=..+=+.-..|||+-+.+..++....-..+++- .+ +
T Consensus 32 l~~~w~l~IL~~L~------~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G--~~-l 102 (131)
T 1yyv_A 32 VTSRWGVLILVALR------DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLG--EQ-V 102 (131)
T ss_dssp HHSHHHHHHHHHGG------GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHH--HH-H
T ss_pred HcCCcHHHHHHHHH------cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccH--HH-H
Confidence 33556655555553 2468999999999 7999999999999999999999998877766555555542 22 3
Q ss_pred HHHHHHHHHHHHHH
Q 043780 356 KSLRDRLDSWLGKV 369 (386)
Q Consensus 356 ~~L~~~L~~W~~~v 369 (386)
...-..+..|....
T Consensus 103 ~~~l~~l~~w~~~~ 116 (131)
T 1yyv_A 103 SDXVAALADWIELN 116 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334556776543
No 45
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=77.83 E-value=16 Score=30.30 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=43.9
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+||+.++++...|=..|=+....|+|.-.-|..++....-..++
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~ 108 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTP 108 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECH
Confidence 46999999999999999999999999999999999998888766655554
No 46
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=77.48 E-value=42 Score=30.45 Aligned_cols=126 Identities=9% Similarity=0.005 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHH---HHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccC
Q 043780 54 ALIQLYHNFITDFETKINLLKLAHFA---VIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQG 130 (386)
Q Consensus 54 ~~~~ly~~fi~~f~~kin~l~l~~i~---~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~ 130 (386)
.-++.|+..+.-+...=+|-..+... ..+... .++++|++++++..+.... ..+......+...++.++...|
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~---~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN---EERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHcC
Confidence 34566666666555433443333322 222334 6788888888776554421 1111122334455677777888
Q ss_pred ChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 043780 131 DRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYL 185 (386)
Q Consensus 131 ~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL 185 (386)
+++++...++++-....... .....+..|...+..+...|++.+.....-+++
T Consensus 170 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888877776544322211 122223333344444445566666555555555
No 47
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=77.31 E-value=4.3 Score=33.16 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=45.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEee---cCCC-C---EEEEEeeccccCChhhHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGII---DQVE-G---TVHVSWVQPRVLGIPQIKSLRDRLDSWL 366 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~I---Dqv~-~---~v~vt~v~~R~l~~~q~~~L~~~L~~W~ 366 (386)
..+|+.+||+.++++...|-..+=+....|+|++.- |... + +..|. + + +.+.......+.|..|-
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~-~--~-~~~~~~~~~~~~l~~~~ 88 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITG-V--D-TKPEKLFEVAEKLKEYD 88 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEE-E--E-ECGGGHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEE-E--E-ECchhHHHHHHHHhcCC
Confidence 467999999999999999999999999999998753 3221 1 11221 1 1 13456677777777764
No 48
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=77.22 E-value=10 Score=30.07 Aligned_cols=50 Identities=4% Similarity=0.055 Sum_probs=41.1
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+||+.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~ 95 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTK 95 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECH
Confidence 46999999999999999999999999999999998887666544433433
No 49
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=76.40 E-value=18 Score=27.03 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=44.4
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHH
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 365 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W 365 (386)
...++..+|++.++++...|-..+=+....|+|...-+....... ++.+.+..+...+..+
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~--------l~~~~~~~l~~~l~~~ 96 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYS--------IKNEAVNAIIATLKNV 96 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEE--------ECCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEE--------EChHHHHHHHHHHHHh
Confidence 357999999999999999999999999999999887553322222 2345566666655544
No 50
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=76.25 E-value=17 Score=30.25 Aligned_cols=81 Identities=6% Similarity=0.032 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHH
Q 043780 278 LEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKS 357 (386)
Q Consensus 278 ~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~ 357 (386)
-.+.+++.|..|. .+.++|.+|++.++++..-|=..+=+....|+|+.+-+..++ ...-..+++- .+-. .
T Consensus 22 ~~~w~l~IL~~L~------~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G--~~l~-~ 91 (146)
T 2f2e_A 22 GDGWSMLIVRDAF------EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKG--RALF-P 91 (146)
T ss_dssp CSSSHHHHHHHHH------TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHH--HTTH-H
T ss_pred CCchHHHHHHHHH------hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchH--HHHH-H
Confidence 3455555555553 246899999999999999999999999999999999988776 3333444431 2222 2
Q ss_pred HHHHHHHHHHH
Q 043780 358 LRDRLDSWLGK 368 (386)
Q Consensus 358 L~~~L~~W~~~ 368 (386)
.-..+..|...
T Consensus 92 ~l~~l~~w~~~ 102 (146)
T 2f2e_A 92 LLVAIRQWGED 102 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 23445667654
No 51
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=76.20 E-value=15 Score=30.81 Aligned_cols=50 Identities=8% Similarity=-0.076 Sum_probs=36.9
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+||+.++++..-|=..|=+....|+|.-.-|..++....-..++
T Consensus 67 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 116 (166)
T 3deu_A 67 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTE 116 (166)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECG
T ss_pred CCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECH
Confidence 45999999999999999999999999999999999888777665555554
No 52
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=75.76 E-value=6.6 Score=31.83 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=40.1
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
.++..+||+.++++...|-..|=+....|+|.-.-|..++....-..+
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT 92 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLT 92 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEC
Confidence 499999999999999999999999999999998887776654433333
No 53
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=75.58 E-value=13 Score=29.76 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=48.1
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHH
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 365 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W 365 (386)
...++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++. +.+-+..+......|
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~--G~~~~~~~~~~~~~~ 116 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPK--ADVLIADIEAIAASV 116 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTT--HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHh--HHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999988776665544444443 233334444444333
No 54
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=75.48 E-value=37 Score=28.92 Aligned_cols=132 Identities=9% Similarity=-0.025 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHhh--cChHHHHHH---HHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhc
Q 043780 53 DALIQLYHNFITDFETK--INLLKLAHF---AVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKL 127 (386)
Q Consensus 53 ~~~~~ly~~fi~~f~~k--in~l~l~~i---~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l 127 (386)
+.-++.|+..+.-+... -++-..+.. +..+.....+.++|++++++..+....... .+......+....+.++.
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHH
Confidence 34567777777666443 121222222 233334456899999999887666532111 112234555667788888
Q ss_pred ccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 043780 128 EQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYL 185 (386)
Q Consensus 128 ~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL 185 (386)
..|+++++...++++-.......+-+..-....|...+..+...|++.+.....-..+
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999888776553322222222333444455556666777766544444444
No 55
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=75.39 E-value=16 Score=29.52 Aligned_cols=49 Identities=12% Similarity=-0.023 Sum_probs=34.7
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
..++..+||+.++++...|-..|=+....|+|.-.-|..++....-..+
T Consensus 53 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT 101 (148)
T 3nrv_A 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLT 101 (148)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEEC
Confidence 4899999999999999999999999999999999888777654443333
No 56
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=75.23 E-value=12 Score=33.76 Aligned_cols=105 Identities=11% Similarity=0.091 Sum_probs=62.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHH
Q 043780 80 VIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYAN 159 (386)
Q Consensus 80 ~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~ 159 (386)
..+.....+.++|++++++..+..... +......+.+...+|.++...|++++|.+.++++-........ ....+.
T Consensus 162 g~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~--~~~~~~ 237 (293)
T 2qfc_A 162 ANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS--MALIGQ 237 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB--CSSHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc--HHHHHH
Confidence 334445668999999999887554311 1111222245567788889999999999988876543322111 122344
Q ss_pred HHHHHHHHHHHhhcHHHH----HHHHHHHhccC
Q 043780 160 YYWVSSQYHKFHQEFAEF----YKCALLYLAYT 188 (386)
Q Consensus 160 ~y~~~s~~~k~~~~~~~~----y~~~l~yL~~~ 188 (386)
.|...+.+|...|++.+. |..++.....+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 455556666677776544 66666554433
No 57
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=75.13 E-value=17 Score=28.94 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=48.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWL 366 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~ 366 (386)
..++..+||+.++++...|-..|=+....|+|.-.-|..++....-..++. +.+-+..+......|.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~--G~~~~~~~~~~~~~~~ 112 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTS--GIKLVEAFTSIFDEME 112 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHH--HHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHH--HHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999998888776655555443 2333444444444443
No 58
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=74.86 E-value=13 Score=27.32 Aligned_cols=35 Identities=11% Similarity=-0.014 Sum_probs=32.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+.++..+||+.++++...|-..+-.....|+|...
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 46999999999999999999999999999999853
No 59
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=74.79 E-value=13 Score=28.48 Aligned_cols=40 Identities=5% Similarity=0.025 Sum_probs=35.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCC
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVE 337 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~ 337 (386)
+..++.+|++.++++...|-.-+=+.-..|+|..+-+...
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~ 74 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQ 74 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCE
Confidence 4599999999999999999999999999999998766543
No 60
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=74.60 E-value=19 Score=29.01 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=39.6
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 104 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLE 104 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECH
Confidence 46999999999999999999999999999999998887776655444443
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=74.58 E-value=48 Score=30.69 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhcc
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGK 143 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~ 143 (386)
..+.++|++++++..+..... .+......+...+|.++...|+++++...++++-
T Consensus 237 ~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 237 QSQYEDAIPYFKRAIAVFEES---NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555655555544433210 1101223333445555555566665555555443
No 62
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=74.23 E-value=9.6 Score=32.59 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEE
Q 043780 279 EKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVS 343 (386)
Q Consensus 279 ~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt 343 (386)
...-+-+|+.||.. + +.+.+|-++||+.+++|..-|+.++-+.-..|+|..+ -..++-....
T Consensus 26 ~~yAlr~L~~LA~~-~-~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~-rG~~GGy~La 87 (159)
T 3lwf_A 26 GRYGLTITLELAKR-I-GDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI-RGAHGGYVLN 87 (159)
T ss_dssp HHHHHHHHHHHHHT-T-TSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-CSTTCEEEEC
T ss_pred HHHHHHHHHHHHhc-C-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe-cCCCCceEec
Confidence 34555566666653 2 3457999999999999999999999999999999865 3444444443
No 63
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=73.57 E-value=35 Score=27.84 Aligned_cols=95 Identities=9% Similarity=0.074 Sum_probs=60.7
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++++++..+.... .........+...++.++...|+++++...+.++-...+.... ++...+..+...
T Consensus 38 ~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l 113 (203)
T 3gw4_A 38 FMDRFDEARASFQALQQQAQK---SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE-DPLAASANAYEV 113 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc-cHHHHHHHHHHH
Confidence 456899999999887776641 1223344556677888999999999999988877665443321 243444444455
Q ss_pred HHHHHHhhcHHHHHHHHHH
Q 043780 165 SQYHKFHQEFAEFYKCALL 183 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~ 183 (386)
+..+-..|++.+.....-.
T Consensus 114 g~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 5555567777654444333
No 64
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=73.17 E-value=9 Score=31.71 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=32.8
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+..+|+.+||+.++++...|-..+-+....|+|++.
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 357999999999999999999999999999999864
No 65
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=73.12 E-value=19 Score=28.44 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=48.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWL 366 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~ 366 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++. +.+-+..+...+..|.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~--G~~~~~~~~~~~~~~~ 117 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPA--GRAELEAGLAAAREIN 117 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHh--HHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999988877776554444432 2333344444444333
No 66
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=72.94 E-value=6.4 Score=33.27 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=51.6
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHH-HHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLD-SWLGKVHTALLSI 376 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~-~W~~~v~~~~~~l 376 (386)
+.++..+|++.++++...|=.-+-.....|||..+-+....... ++.+.+..+.+.+. -|...+..+...+
T Consensus 70 ~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~--------lt~~~~~~l~~~l~~~~~~~l~~l~~~l 141 (151)
T 3f6v_A 70 GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYR--------LDPQGLAQLRALFDSFWIDELDRLVADA 141 (151)
T ss_dssp CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEE--------ECHHHHHHHHHHHHHHSCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEE--------EChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999987654332222 34566777777666 3555555555444
No 67
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=72.84 E-value=26 Score=28.57 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=40.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..+
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 105 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLT 105 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEEC
Confidence 3699999999999999999999999999999999887766654443333
No 68
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=72.84 E-value=11 Score=30.70 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=40.6
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
..++..+||+.++++...|-..|=+....|+|.-.-|..++....-..+
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 98 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLT 98 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEEC
Confidence 4699999999999999999999999999999999888766654433333
No 69
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=72.80 E-value=15 Score=31.01 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=46.2
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEE---eecCCCC----EEEEEeeccccCChhhHHHHHHHHHHH
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG---IIDQVEG----TVHVSWVQPRVLGIPQIKSLRDRLDSW 365 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G---~IDqv~~----~v~vt~v~~R~l~~~q~~~L~~~L~~W 365 (386)
+..+|+.+||+.++++...|-.-+=+....|+|+| .+|...- .+.|.+-.+.. +.+......+.|..+
T Consensus 15 ~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~-~~~~~~~~~~~l~~~ 89 (162)
T 3i4p_A 15 DSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASH-SIEWLKRFSEVVSEF 89 (162)
T ss_dssp CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSC-CHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCC-ChHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999986 4554321 23333322221 234455665555543
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=72.77 E-value=47 Score=28.83 Aligned_cols=96 Identities=9% Similarity=-0.012 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHH--------------HHHHHHhcccCChHHHHHHHHhccccccccCC
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIK--------------MQIAMFKLEQGDRKECKKLLEDGKSTLDSMTD 151 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~--------------~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~ 151 (386)
..+.++|++.++++.+.- +.+..+. ... ...+.++...|+++++...++++-..-+.
T Consensus 110 ~~~~~~A~~~~~~~l~~~-----p~~~~~~-~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--- 180 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRY-----PNHELVD-DATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD--- 180 (261)
T ss_dssp CHHHHHHHHHHHHHHHHC-----TTCTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred chhHHHHHHHHHHHHHHC-----cCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---
Confidence 457889999888876654 2222222 111 56788899999999999988876543222
Q ss_pred CCHHHHHHHHHHHHHHHHH---------hhcHHHHHHHHHHHhccCCCC
Q 043780 152 IDPSVYANYYWVSSQYHKF---------HQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 152 v~~~v~a~~y~~~s~~~k~---------~~~~~~~y~~~l~yL~~~~~~ 191 (386)
.+....++|.++..|++. .|++.+.....-+.+...|.+
T Consensus 181 -~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 181 -TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp -STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 122344555555555432 266666655555566555543
No 71
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=72.65 E-value=4 Score=30.56 Aligned_cols=37 Identities=3% Similarity=0.037 Sum_probs=33.9
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEee
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGII 333 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~I 333 (386)
...+|..+||+.++++...|...+=+.-..|+|.+.-
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 4589999999999999999999999999999998864
No 72
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=72.60 E-value=32 Score=30.86 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=58.7
Q ss_pred HHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHH
Q 043780 82 VSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYY 161 (386)
Q Consensus 82 v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y 161 (386)
+.....+.++|+++.++..+..... +.+......+-..++.++...|++++|.+.++++-......... ..+-..|+
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~-~~~~~~~~ 240 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM-ALIGQLYY 240 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC-TTHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHH
Confidence 3444568999999998887766421 12223334455678888889999999999888765543332222 22333444
Q ss_pred HHHHHHHHHhh-cHH---HHHHHHHHHh
Q 043780 162 WVSSQYHKFHQ-EFA---EFYKCALLYL 185 (386)
Q Consensus 162 ~~~s~~~k~~~-~~~---~~y~~~l~yL 185 (386)
. .+..|...| ++. .+|+.++...
T Consensus 241 ~-lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 Q-RGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp H-HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 4 444444455 434 3555555443
No 73
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=72.46 E-value=27 Score=28.14 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=40.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..+
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT 101 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLT 101 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEC
Confidence 4699999999999999999999999999999999887766654433333
No 74
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=72.12 E-value=7.7 Score=32.04 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=33.1
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+..+|+.+||+.++++...|-..+-+....|+|++.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 356999999999999999999999999999999874
No 75
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=71.89 E-value=10 Score=31.31 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=34.9
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEE---eecC
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG---IIDQ 335 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G---~IDq 335 (386)
+..+|+.+||+.++++...|-..+-+....|+|++ .+|.
T Consensus 15 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 56 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINP 56 (150)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCH
Confidence 45799999999999999999999999999999998 4554
No 76
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=71.29 E-value=9.2 Score=31.75 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=35.4
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEE---eecCC
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG---IIDQV 336 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G---~IDqv 336 (386)
+..+|+.+||+.+++|...|-..+-+....|+|++ .+|..
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 35799999999999999999999999999999997 46654
No 77
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=70.67 E-value=43 Score=27.49 Aligned_cols=84 Identities=6% Similarity=-0.029 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCccChHHHHHHc-CCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhh
Q 043780 276 KLLEKINILCLMEIIFSRPSEDRTIPLSIIAERT-KLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQ 354 (386)
Q Consensus 276 ~l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l-~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q 354 (386)
.+-.|-+++-|..|. .+..+|.+|++.+ +|+..-+-..+=+.-..|||.-+.+..+.....-..+++- . +
T Consensus 22 ~lg~kW~l~IL~~L~------~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G--~-~ 92 (131)
T 4a5n_A 22 VIGGKWKGILFYHMI------DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFG--R-T 92 (131)
T ss_dssp HHCSSSHHHHHHHHT------TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTG--G-G
T ss_pred HHcCcCHHHHHHHHh------cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhH--H-H
Confidence 344566666666663 3679999999999 9999999999999999999999888776654444444432 1 2
Q ss_pred HHHHHHHHHHHHHH
Q 043780 355 IKSLRDRLDSWLGK 368 (386)
Q Consensus 355 ~~~L~~~L~~W~~~ 368 (386)
+...-..+..|..+
T Consensus 93 l~~~l~~l~~W~~~ 106 (131)
T 4a5n_A 93 LEPIVLQMKEWGES 106 (131)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 22333445566543
No 78
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=70.09 E-value=11 Score=31.53 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEE
Q 043780 281 INILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVS 343 (386)
Q Consensus 281 irlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt 343 (386)
.-+-+|+.|+.. + +.+.+|-++||+.+++|..-|+..+-+.-..|+|+.. -..++-....
T Consensus 12 yAl~~L~~La~~-~-~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~-rG~~GGy~La 71 (143)
T 3t8r_A 12 YGLTLMISLAKK-E-GQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV-RGAKGGYQLR 71 (143)
T ss_dssp HHHHHHHHHHTT-T-TSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC-SSSSSEEEES
T ss_pred HHHHHHHHHHhC-C-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec-CCCCCCeeec
Confidence 344456666643 2 2457999999999999999999999999999999864 4445554443
No 79
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=70.03 E-value=14 Score=30.09 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=48.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEE--eecCCCCEEEEEeecc---------------------ccCChhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG--IIDQVEGTVHVSWVQP---------------------RVLGIPQ 354 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G--~IDqv~~~v~vt~v~~---------------------R~l~~~q 354 (386)
..++..+||+.++++...|=..|=+....|+|.- ..|..++....-..++ ..++.++
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e 129 (151)
T 3kp7_A 50 EALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMSHIASDMTSDFDSKE 129 (151)
T ss_dssp SCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHHHHHHHHHHHTTTTSCHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 5799999999999999999999999999999998 3477777655544442 2355556
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043780 355 IKSLRDRLDSWLGKVHTA 372 (386)
Q Consensus 355 ~~~L~~~L~~W~~~v~~~ 372 (386)
.+.+..-|..+.+++.+.
T Consensus 130 ~~~l~~~l~~l~~~l~~~ 147 (151)
T 3kp7_A 130 IEKVRQVLEIIDYRIQSY 147 (151)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666655555555555443
No 80
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=69.66 E-value=14 Score=29.78 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=38.7
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 99 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTD 99 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECH
Confidence 57999999999999999999999999999999998877776544444433
No 81
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=69.42 E-value=25 Score=26.52 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=34.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCC
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQV 336 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv 336 (386)
+.+++.+|++.++++...|-..+=..-..|+|+.+-+..
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQ 73 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 579999999999999999999999999999999875544
No 82
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=69.07 E-value=6.3 Score=33.91 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+..+|+.+||+.++++...|-..+-+....|+|++.
T Consensus 39 ~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 39 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 357999999999999999999999999999999873
No 83
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=68.95 E-value=58 Score=28.29 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=56.9
Q ss_pred HhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHH
Q 043780 83 SRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYW 162 (386)
Q Consensus 83 ~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~ 162 (386)
.....+.++|++++++..+...... ..+......+....+.++...|+++++...++++-.......+-+.......|.
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTL-GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3345689999999988766543110 012233455566778888999999999998887765432221111223333344
Q ss_pred HHHHHHHHhhcHHHHHHH
Q 043780 163 VSSQYHKFHQEFAEFYKC 180 (386)
Q Consensus 163 ~~s~~~k~~~~~~~~y~~ 180 (386)
..+..+...|++.+....
T Consensus 158 ~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp HHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 445555566776654333
No 84
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=68.89 E-value=13 Score=30.91 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=32.7
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+..+|+.+||+.++++...|-..+-+....|+|++.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 357999999999999999999999999999999873
No 85
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=68.55 E-value=33 Score=27.06 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=40.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEee
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWV 345 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v 345 (386)
..++..+||+.++++...|-..|=+....|+|.-.-+..++....-..
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~l 91 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWP 91 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEE
Confidence 369999999999999999999999999999999988876664433333
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=68.20 E-value=46 Score=30.91 Aligned_cols=129 Identities=9% Similarity=-0.044 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHhhcC-hHHHHHH---HHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhccc
Q 043780 54 ALIQLYHNFITDFETKIN-LLKLAHF---AVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQ 129 (386)
Q Consensus 54 ~~~~ly~~fi~~f~~kin-~l~l~~i---~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~ 129 (386)
.-++.|+..+.-+...-+ +...+.. +..+.....+.++|++.+++..+..... .+......+...+|.++...
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---QNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHC
Confidence 345667777766665443 3333333 3334445678999999998876655311 22223445556778889999
Q ss_pred CChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q 043780 130 GDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYT 188 (386)
Q Consensus 130 ~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~ 188 (386)
|+++++...++++-...+... ++.....+ ...+..+...|++.+.....-+.+...
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~--~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKV--PDLLPKVL-FGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC--GGGHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhhC--ChhHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999998887765433222 23333333 344555556788877666655555544
No 87
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=68.16 E-value=16 Score=29.36 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=33.0
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
.+.+|-.+||+.+++|..-|+..+-+.-..|+|...
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 467999999999999999999999999999999864
No 88
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=67.88 E-value=21 Score=29.23 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=33.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEE
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHV 342 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~v 342 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~ 106 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSM 106 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeE
Confidence 479999999999999999999999999999999887776665443
No 89
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=67.80 E-value=36 Score=25.52 Aligned_cols=96 Identities=5% Similarity=-0.152 Sum_probs=58.4
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++.++++.+.- +.+. -........+..+...|+++++...++.+-..-+.. +.....+|..+
T Consensus 14 ~~~~~~~A~~~~~~~~~~~-----p~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~~~la 83 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELY-----PNGV-YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH----DKAAGGLLKLG 83 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHC-----SSST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS----TTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHC-----CCCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC----cccHHHHHHHH
Confidence 3458999999998875544 1221 111233456788888999999999888765432221 12233444444
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCCCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
. .+...|++.+.....-..+...|.+
T Consensus 84 ~-~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 84 L-SQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred H-HHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3 4446788887766666666655543
No 90
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=67.66 E-value=11 Score=28.25 Aligned_cols=42 Identities=7% Similarity=0.027 Sum_probs=35.1
Q ss_pred HHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceE
Q 043780 285 CLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIE 330 (386)
Q Consensus 285 aL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~ 330 (386)
.++++... ++.++.++||+.+++++.-|..-+-+....|+|+
T Consensus 6 ~Il~~L~~----~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 6 QVRDLLAL----RGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHH----SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHH----cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 45555543 5799999999999999999999999999999885
No 91
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=67.18 E-value=34 Score=27.96 Aligned_cols=49 Identities=8% Similarity=0.102 Sum_probs=39.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..+
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 113 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLT 113 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEEC
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC
Confidence 4699999999999999999999999999999998887666554433333
No 92
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=66.85 E-value=33 Score=27.07 Aligned_cols=50 Identities=6% Similarity=0.050 Sum_probs=41.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~ 96 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT 96 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEECh
Confidence 46899999999999999999999999999999998888777654443443
No 93
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=66.83 E-value=14 Score=30.26 Aligned_cols=49 Identities=6% Similarity=0.104 Sum_probs=35.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..+
T Consensus 61 ~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 109 (160)
T 3boq_A 61 DGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLT 109 (160)
T ss_dssp TCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEEC
T ss_pred CCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEC
Confidence 4699999999999999999999999999999999877766665444444
No 94
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=66.69 E-value=21 Score=28.62 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=45.8
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHH
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWL 366 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~ 366 (386)
+..++..+||+.++++...|-..|=+....|+|+-.-|..++....-..++. +.+-++.+......|.
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~--G~~~~~~~~~~~~~~~ 115 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQ--GKAIKSPLAEISVKVF 115 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHH--HHHTHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChH--HHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999998888877665555553 2333444444444443
No 95
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=66.14 E-value=81 Score=28.97 Aligned_cols=131 Identities=8% Similarity=-0.114 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHH---HHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccC
Q 043780 54 ALIQLYHNFITDFETKINLLKLAHFAVI---VSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQG 130 (386)
Q Consensus 54 ~~~~ly~~fi~~f~~kin~l~l~~i~~~---v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~ 130 (386)
.-++.|+..+.-+...-++...+..... +.....+.++|++.+++..+.... ..+......+....+.++...|
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g 317 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE---LGEREVEAQSCYSLGNTYTLLH 317 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcC
Confidence 4567777777766665555444333333 333456899999999887666531 1122233455567788889999
Q ss_pred ChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCC
Q 043780 131 DRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 131 ~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
+++++...++++-...+... ++......|...+..|...|++.+.....-+.+...+
T Consensus 318 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 318 EFNTAIEYHNRHLAIAQELG--DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 99999999988765544332 2445555666677788889999888877777776654
No 96
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=66.04 E-value=35 Score=29.81 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=32.7
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+.+|+.+||+.++++...|-..+=+....|+|++.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35999999999999999999999999999999997
No 97
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=65.66 E-value=13 Score=26.79 Aligned_cols=34 Identities=3% Similarity=0.176 Sum_probs=30.9
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEE
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG 331 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G 331 (386)
+.++..+||+.+++|...|...|=..-..|+|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 5699999999999999999999888888999865
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=64.85 E-value=69 Score=27.70 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-hhhcCchhHHHHHHHHHHHHHhhcChHHHHHHHHHHHhcCCChHHHHH
Q 043780 16 ELGEWYNALADLYQKKLWHQLTLKLEQFVAH-AVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAIS 94 (386)
Q Consensus 16 ~~~~~~~~~~~l~~~KLWhqLt~~l~~~~~~-~~~~~~~~~~~ly~~fi~~f~~kin~l~l~~i~~~v~~~~~d~~~al~ 94 (386)
.....+..-..++..+-|.+=...+..++.. |.. +...+. +. .+..+.....+.++|++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~a----------------~~-~lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH---EWAADA----------------QF-YLARAYYQNKEYLLAAS 73 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS---TTHHHH----------------HH-HHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---cchHHH----------------HH-HHHHHHHHhCcHHHHHH
Confidence 4466788888888888888777777777654 211 101111 11 12233344568999999
Q ss_pred HHHHHHHHhhhccccCC-CchHHHHHHHHHHHhcc--------cCChHHHHHHHHhcccc
Q 043780 95 YLEGVIEKLRATNEQRK-EEPILYIKMQIAMFKLE--------QGDRKECKKLLEDGKST 145 (386)
Q Consensus 95 fl~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~l~--------~~~l~~~~~~l~~~~~~ 145 (386)
.++++.+.- +.+ ..+..+ ...+..+.. .|+++++...++++-..
T Consensus 74 ~~~~~l~~~-----p~~~~~~~a~--~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 74 EYERFIQIY-----QIDPRVPQAE--YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHC-----TTCTTHHHHH--HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-----CCCchhHHHH--HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 998876654 112 123333 344556655 88999999888876544
No 99
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=64.71 E-value=13 Score=31.27 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=32.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
..+|+.+||+.++++...|-..+-+....|+|++.
T Consensus 23 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 23 GRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 45899999999999999999999999999999873
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=64.52 E-value=7.8 Score=27.58 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=25.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
...|+++||+.+++|..-|...+-+|+.
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5799999999999999999999988864
No 101
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=64.19 E-value=16 Score=30.23 Aligned_cols=60 Identities=13% Similarity=0.002 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEE--eecCCCCEEEEE
Q 043780 281 INILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG--IIDQVEGTVHVS 343 (386)
Q Consensus 281 irlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G--~IDqv~~~v~vt 343 (386)
+-++-|.... ..+..-.|-++||+.+++++.+|...+=+.+..|+|.= +.|..++....=
T Consensus 36 ~lLl~L~~~~---~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~y 97 (135)
T 2v79_A 36 ILLLKIKMHL---EKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKY 97 (135)
T ss_dssp HHHHHHHHHH---TTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHHH---hcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEe
Confidence 3445555542 23456789999999999999999999999999999986 556655544443
No 102
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=63.48 E-value=42 Score=25.15 Aligned_cols=58 Identities=9% Similarity=0.117 Sum_probs=39.0
Q ss_pred HHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhcccc
Q 043780 82 VSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKST 145 (386)
Q Consensus 82 v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~ 145 (386)
+.....+.++|++.++++.+.- +.+.. ........+.++...|+++++...++++-..
T Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~-----p~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 48 SYYATRNFQLAEAQFRDLVSRY-----PTHDK-AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----TTSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHC-----CCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3345668999999998876544 12211 1223345677788899999999999877554
No 103
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=63.46 E-value=43 Score=26.34 Aligned_cols=50 Identities=4% Similarity=-0.067 Sum_probs=42.1
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 98 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTE 98 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECH
Confidence 35999999999999999999999999999999998888777655444443
No 104
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=63.31 E-value=24 Score=28.32 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=37.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 49 ~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 98 (147)
T 2hr3_A 49 GDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSS 98 (147)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECH
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECH
Confidence 56999999999999999999999999999999998887666554443443
No 105
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=63.21 E-value=16 Score=30.11 Aligned_cols=50 Identities=6% Similarity=0.028 Sum_probs=39.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|=..|=+....|+|.-.-|..++....-..++
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~ 115 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTR 115 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECH
Confidence 47999999999999999999999999999999998887777655444443
No 106
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=63.13 E-value=8.8 Score=29.39 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=30.3
Q ss_pred cChHHHHHHcCCChhHHHHHHHHHhhccceEE
Q 043780 300 IPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG 331 (386)
Q Consensus 300 isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G 331 (386)
+|+.+||++++++...|-..+-+.-..|+|.-
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999999976
No 107
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=62.85 E-value=51 Score=25.81 Aligned_cols=85 Identities=11% Similarity=0.075 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCccChHHHHHHc-CCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChh
Q 043780 275 KKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERT-KLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIP 353 (386)
Q Consensus 275 ~~l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l-~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~ 353 (386)
..+-.|-|+.-|..|. . +...++|.+|++.+ +++..-+=..+=+.-..|||+-+.+ ..+.+ ..+++ + .
T Consensus 22 ~~l~~~wrl~IL~~L~-~---g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~---r~~~y-~LT~~--G-~ 90 (111)
T 3df8_A 22 HLLGKKYTMLIISVLG-N---GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG---QITTY-ALTEK--G-M 90 (111)
T ss_dssp HHHHSTTHHHHHHHHT-S---SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES---SSEEE-EECHH--H-H
T ss_pred HHHcCccHHHHHHHHh-c---CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec---CcEEE-EECcc--H-H
Confidence 3455666766666664 2 22346699999999 9999999999999999999999888 22222 11121 1 2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 043780 354 QIKSLRDRLDSWLGKVH 370 (386)
Q Consensus 354 q~~~L~~~L~~W~~~v~ 370 (386)
++...-..+..|.....
T Consensus 91 ~l~~~l~~l~~w~~~~~ 107 (111)
T 3df8_A 91 NVRNSLMPLLQYISVLD 107 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34445556677876543
No 108
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=62.73 E-value=9.5 Score=28.90 Aligned_cols=36 Identities=3% Similarity=0.045 Sum_probs=32.4
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
...+|..+||+.++++...|...+-+.-..|+|.-.
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 357999999999999999999999999999999643
No 109
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=62.70 E-value=20 Score=27.72 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=33.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecC
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQ 335 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDq 335 (386)
+.+++.+|++.++++...|-..+-.....|+|..+-+.
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 35899999999999999999999888899999987543
No 110
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=62.68 E-value=86 Score=28.02 Aligned_cols=205 Identities=12% Similarity=0.067 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHHhhcChHHHHHH---HHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhccc
Q 043780 53 DALIQLYHNFITDFETKINLLKLAHF---AVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQ 129 (386)
Q Consensus 53 ~~~~~ly~~fi~~f~~kin~l~l~~i---~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~ 129 (386)
+.-++.|..-+.-+...=||-..+.. +..+.....++++|++.+++..+-... ..+......+...++.++...
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~---~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH---RGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHh
Confidence 34566666666554433344333333 233444567899999999887664421 112222233445677888885
Q ss_pred -CChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH
Q 043780 130 -GDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVESLSDSFKLDLAFDLSLS 208 (386)
Q Consensus 130 -~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~~~~~~e~~~~a~~l~i~ 208 (386)
|+++++....+++-...+... ++...+..|.-.+..+...|+|.+.....-+.+...+.+....-.....-..++..
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 999999988887654433221 12233344555566677788888766665555554443321110111111222222
Q ss_pred HhcCCC----cccccccccC-hhhhcccCCCcHHHHHHHHHHhcCCHHHHHHHHHHhhhhh
Q 043780 209 ALLGDN----IYNFGELLAH-PIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAAL 264 (386)
Q Consensus 209 AL~~~~----iy~FgeLl~~-p~v~~L~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~ 264 (386)
.+...+ +-.|..-+.. |.+.. ..+..-+..+..++..|+.++|.+.+..+...+
T Consensus 209 ~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSEDPNFAD--SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 221111 0111121211 21110 112234667888998999999998877654433
No 111
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=62.53 E-value=90 Score=28.25 Aligned_cols=127 Identities=9% Similarity=-0.013 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCC
Q 043780 55 LIQLYHNFITDFETKINLLKLAHFAVIVS---RQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGD 131 (386)
Q Consensus 55 ~~~ly~~fi~~f~~kin~l~l~~i~~~v~---~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~ 131 (386)
-++.|..-+.-+...-++-..+.+....+ ....+.++|++++++..+.... ..+......+....+.++...|+
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHcCC
Confidence 44555555555444334444443333332 3345889999999887665531 12223344566677888889999
Q ss_pred hHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 043780 132 RKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 186 (386)
Q Consensus 132 l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~ 186 (386)
++++...++++-...+... ++...+..|...+..+...|++.+.....-..+.
T Consensus 243 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCc--CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999887765443322 2344454555556666677887765555444443
No 112
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=62.03 E-value=23 Score=28.31 Aligned_cols=50 Identities=6% Similarity=0.018 Sum_probs=31.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+||+.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~ 99 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTD 99 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECH
Confidence 46999999999999999999999999999999999988887655444443
No 113
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=61.64 E-value=17 Score=29.96 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=33.3
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEee
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGII 333 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~I 333 (386)
+..+|+.+||+.++++...|-..+=+....|+|++.-
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 3569999999999999999999999999999998643
No 114
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=61.10 E-value=18 Score=30.04 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEee
Q 043780 281 INILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGII 333 (386)
Q Consensus 281 irlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~I 333 (386)
.-+-+|+.||.. + .+ |-++||+.+++|..-++.++-+.-..|||+..=
T Consensus 10 yAl~~L~~La~~-~--~~--s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~r 57 (145)
T 1xd7_A 10 VAIHILSLISMD-E--KT--SSEIIADSVNTNPVVVRRMISLLKKADILTSRA 57 (145)
T ss_dssp HHHHHHHHHHTC-S--CC--CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHHHHHHHHhC-C--CC--CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeec
Confidence 445566666643 2 23 999999999999999999999999999998654
No 115
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=60.97 E-value=31 Score=27.84 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=34.6
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|=..|=+....|+|.-.-|..++....-..++
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 102 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATE 102 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECH
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECH
Confidence 45999999999999999999999999999999998888887765554544
No 116
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=60.90 E-value=53 Score=25.84 Aligned_cols=67 Identities=7% Similarity=-0.028 Sum_probs=48.3
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHH
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLG 367 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~ 367 (386)
.++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++.- .+-+..+......|..
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G--~~~~~~~~~~~~~~~~ 116 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKA--NKLETIILSYMDSDQS 116 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHH--HTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHH--HHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999998888777655444444431 3334444444444443
No 117
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=60.82 E-value=35 Score=28.33 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=42.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~ 107 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTK 107 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECH
Confidence 36999999999999999999999999999999998888777655444443
No 118
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=60.49 E-value=20 Score=29.91 Aligned_cols=48 Identities=8% Similarity=-0.012 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEee
Q 043780 283 ILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGII 333 (386)
Q Consensus 283 lLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~I 333 (386)
+-+|+.|+.. + .+.+|-++||+.+++|..-|+.++-+.-..|+|+..=
T Consensus 17 l~~L~~La~~-~--~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~r 64 (149)
T 1ylf_A 17 VHILSILKNN-P--SSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNR 64 (149)
T ss_dssp HHHHHHHHHS-C--GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHhC-C--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEcc
Confidence 4445555542 2 4679999999999999999999999999999998643
No 119
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=60.44 E-value=13 Score=28.73 Aligned_cols=44 Identities=7% Similarity=0.098 Sum_probs=36.7
Q ss_pred HHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 285 CLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 285 aL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
.++++... .+.++.++||+.+++++.-|..-+-+....|+|+-.
T Consensus 6 ~Il~~L~~----~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLAL----QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHH----SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHH----cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34454443 579999999999999999999999999999988764
No 120
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=60.09 E-value=9.6 Score=27.50 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
...|+.+||+.+++|..-|...+-+|+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 579999999999999999999887775
No 121
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=59.84 E-value=28 Score=27.79 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=32.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIID 334 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ID 334 (386)
+.+++.+|++.++++...|-..+=.....|+|...-+
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 5699999999999999999999998889999988644
No 122
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=59.00 E-value=18 Score=27.29 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=33.8
Q ss_pred ccChHHHHHHcCCChhH-HHHHHHHHhhccceEEeecCCCCE
Q 043780 299 TIPLSIIAERTKLSIED-VEHLLMKSLSVHLIEGIIDQVEGT 339 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~e-VE~lvikAi~~gLI~G~IDqv~~~ 339 (386)
.++..+||+.++++..- |=..|=+....|+|. -|..++.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~--~~~~drR 69 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK--EETLSYR 69 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE--EEEEETT
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee--cCCCCCC
Confidence 69999999999999999 999999999999999 4544443
No 123
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=58.40 E-value=1e+02 Score=27.50 Aligned_cols=132 Identities=11% Similarity=-0.024 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHH---HHHHhc-CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhccc
Q 043780 54 ALIQLYHNFITDFETKINLLKLAHFA---VIVSRQ-YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQ 129 (386)
Q Consensus 54 ~~~~ly~~fi~~f~~kin~l~l~~i~---~~v~~~-~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~ 129 (386)
.-++.|+.-+.-+...=++-..+... ..+... ..++++|+++.++..+.... ..+......+...++.++...
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~---~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHh
Confidence 35566666666555443443322222 233344 37899999999887665521 111111223445678888999
Q ss_pred CChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCC
Q 043780 130 GDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 130 ~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
|+++++...++++-..-+........+ ..+|.-.+..+...|++.+.....-+++...|
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSL-KDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999998887765433322111122 22344445556668888776666666665443
No 124
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=58.01 E-value=51 Score=28.08 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=44.7
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
...++-.+||+.++++...|=..|=+....|+|.-.-|..++....-..++
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 105 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTD 105 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECH
Confidence 467999999999999999999999999999999999999888766655554
No 125
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=57.91 E-value=32 Score=27.41 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=35.0
Q ss_pred cChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc
Q 043780 300 IPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR 348 (386)
Q Consensus 300 isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R 348 (386)
++..+||+.++++..-|-..|=+....|+|.-.-|..++....-..+++
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~ 100 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDL 100 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGG
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHh
Confidence 9999999999999999999999999999999999887777665555543
No 126
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=57.81 E-value=25 Score=28.51 Aligned_cols=46 Identities=7% Similarity=0.097 Sum_probs=35.5
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEE
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHV 342 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~v 342 (386)
...++..+|++.++++...|-..|=+....|+|.-.-|..++....
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~ 100 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVR 100 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeE
Confidence 3579999999999999999999999999999999887776665443
No 127
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=57.02 E-value=11 Score=28.33 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=25.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
...|+.+||+.+++|..-|...+-+|+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999888853
No 128
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=56.54 E-value=66 Score=25.83 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=36.1
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..+
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 108 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALT 108 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEEC
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeEC
Confidence 4699999999999999999999999999999998887766654443333
No 129
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=56.48 E-value=10 Score=29.77 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=25.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
...||++||+.+++|..-|...+-+|+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5799999999999999999999988853
No 130
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=56.36 E-value=56 Score=25.95 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=48.4
Q ss_pred ChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHH
Q 043780 301 PLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWL 366 (386)
Q Consensus 301 sf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~ 366 (386)
+..+|++.++++...|=..|=+....|+|.-.-|..++....-..++. +.+-+..+......|.
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~--G~~~~~~~~~~~~~~~ 115 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPK--GRQVLLEANEVLRNLV 115 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHH--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887666555543 2333444444444443
No 131
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=56.27 E-value=31 Score=27.35 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=33.1
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecC
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQ 335 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDq 335 (386)
..++.+|++.++++...|-..+=..-..|+|..+-+.
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG 70 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC
Confidence 4789999999999999999999999999999987553
No 132
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=55.07 E-value=42 Score=27.68 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=48.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWL 366 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~ 366 (386)
..++..+|++.++++..-|=..|=+....|+|.-.-|..++....-..++. +.+-+..+......|.
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~--G~~~~~~~~~~~~~~~ 127 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDA--GLKLLKDLEEPVRQCH 127 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH--HHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHH--HHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999998887766666553 2333444444444433
No 133
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=54.40 E-value=51 Score=26.84 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=42.5
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR 348 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R 348 (386)
+..++-.+|++.++++...|=..|=+....|+|.=.-|..++....-..++.
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 100 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDK 100 (147)
T ss_dssp GGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHH
Confidence 4579999999999999999999999999999999999999887776666653
No 134
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=54.30 E-value=25 Score=28.02 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=52.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKV 369 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v 369 (386)
..++..+||+.++++...|=..|=+....|+|.-.-|..++....-..++. +.+-++.+...+..|....
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~--G~~~~~~~~~~~~~~~~~~ 121 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQ--QRKKIESLLSRVNKRITEA 121 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHH--HHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999988888876655555543 2334555555555554443
No 135
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=53.88 E-value=18 Score=27.25 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=24.9
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
..+|+.+||+.++++..-|...+-+|+.
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999888753
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=53.69 E-value=75 Score=24.54 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=55.0
Q ss_pred hcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHH
Q 043780 84 RQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWV 163 (386)
Q Consensus 84 ~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~ 163 (386)
....+.++|+++.++..+.- ..++.++. ..|.++...|+++++.+..+.+-..-++.... ....+.-|.-
T Consensus 19 ~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~--nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~a~~~~~ 88 (127)
T 4gcn_A 19 YKQKDFEKAHVHYDKAIELD-------PSNITFYN--NKAAVYFEEKKFAECVQFCEKAVEVGRETRAD-YKLIAKAMSR 88 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-------TTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-------CCCHHHHH--hHHHHHHHhhhHHHHHHHHHHHHHhCcccchh-hHHHHHHHHH
Confidence 34568999999988764321 23455554 45777888899999988777654332222222 2333333444
Q ss_pred HHHHHHHhhcHHHHHHHHHHHhc
Q 043780 164 SSQYHKFHQEFAEFYKCALLYLA 186 (386)
Q Consensus 164 ~s~~~k~~~~~~~~y~~~l~yL~ 186 (386)
.+..+...++|.+.....-+.|.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566677887765444444443
No 137
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=53.30 E-value=64 Score=23.61 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=57.5
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++++++..+.- ...+.++ ...+.++...|+++++...++++-..-+..... .......|...
T Consensus 16 ~~~~~~~A~~~~~~a~~~~-------~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 85 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKELD-------PTNMTYI--TNQAAVYFEKGDYNKCRELCEKAIEVGRENRED-YRQIAKAYARI 85 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------TTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-------CccHHHH--HHHHHHHHHhccHHHHHHHHHHHHhhccccchh-HHHHHHHHHHH
Confidence 4568999999998875543 1223333 556778888999999999888765443222111 12213333344
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
+..+...|++.+.....-..+...+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC
Confidence 5555567888776666666555433
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=53.27 E-value=58 Score=23.12 Aligned_cols=92 Identities=8% Similarity=-0.019 Sum_probs=56.7
Q ss_pred hcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHH
Q 043780 84 RQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWV 163 (386)
Q Consensus 84 ~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~ 163 (386)
....+.++|++.+++..+.- ...+.++ ...+.++...|+++++.+.++++-..-+. .... ..+..
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~-------~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~----~~~~~ 81 (112)
T 2kck_A 17 YDAGNYTESIDLFEKAIQLD-------PEESKYW--LMKGKALYNLERYEEAVDCYNYVINVIED--EYNK----DVWAA 81 (112)
T ss_dssp HSSCCHHHHHHHHHHHHHHC-------CCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCH----HHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhC-------cCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchH----HHHHH
Confidence 34568899999988765543 1233333 45677788889999999988877543222 0011 22334
Q ss_pred HHHHHHHh-hcHHHHHHHHHHHhccCCC
Q 043780 164 SSQYHKFH-QEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 164 ~s~~~k~~-~~~~~~y~~~l~yL~~~~~ 190 (386)
.+..+... |++.+........+...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 45555567 7877776666666655543
No 139
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=52.72 E-value=1.7e+02 Score=28.37 Aligned_cols=175 Identities=13% Similarity=0.022 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHh-hhHHHHHHHHHHHHhc-hhh--------------cCchhHHHHHHHHHHHH
Q 043780 3 ALQYLESLRNDHPELGEWYNALADLYQK-KLWHQLTLKLEQFVAH-AVF--------------QAGDALIQLYHNFITDF 66 (386)
Q Consensus 3 ~~~~L~~~~~~~p~~~~~~~~~~~l~~~-KLWhqLt~~l~~~~~~-~~~--------------~~~~~~~~ly~~fi~~f 66 (386)
+..++.+.....|.....|..+-..|.+ +-|.+=-..+.+.+.. |.. ...+.-+++|+..+...
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4456666666677655555555555443 3333322222222221 100 01122344555544321
Q ss_pred HhhcChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccc
Q 043780 67 ETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTL 146 (386)
Q Consensus 67 ~~kin~l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l 146 (386)
.-||..+..++. +..+..+.++|++++++..+...+ .+.+++....+-...+..+...|+++++.+.++++-..-
T Consensus 472 --~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~--~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 472 --QYDPLLLNELGV-VAFNKSDMQTAINHFQNALLLVKK--TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp --CCCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHH--SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred --CCChHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhhhc--cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 124544444443 333456899999999987765421 112333224444566778888999999999998765431
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCC
Q 043780 147 DSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 147 ~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~ 190 (386)
+. ++ ..|...+..|...|++.+.....-+.+..-|.
T Consensus 547 p~----~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 547 TN----DA----NVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp SC----CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CC----Ch----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 11 12 33445566677788888777666666655443
No 140
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=52.42 E-value=1e+02 Score=25.76 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=60.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHH
Q 043780 80 VIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYAN 159 (386)
Q Consensus 80 ~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~ 159 (386)
..+.....+.++|++.+++..+.- ...+. +....+.++...|+++++.+.++++-..-+....+ ....+.
T Consensus 49 ~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~ 118 (228)
T 4i17_A 49 GVCADNIKKYKEAADYFDIAIKKN-------YNLAN--AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI-EKLYAI 118 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT-------CSHHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHH
T ss_pred HHHHHHhhcHHHHHHHHHHHHHhC-------cchHH--HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-HHHHHH
Confidence 334445668999999998765322 22333 34557888888999999999998876543331111 112234
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q 043780 160 YYWVSSQYHKFHQEFAEFYKCALLYLAY 187 (386)
Q Consensus 160 ~y~~~s~~~k~~~~~~~~y~~~l~yL~~ 187 (386)
.|...+..+...|++.+.....-+.+..
T Consensus 119 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 119 YYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 4555666666778887766666665554
No 141
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=51.71 E-value=28 Score=27.88 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=37.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEE
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTV 340 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v 340 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++..
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~ 95 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERS 95 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTS
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCe
Confidence 3789999999999999999999999999999998877655543
No 142
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=49.78 E-value=35 Score=28.98 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=41.6
Q ss_pred HHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEE
Q 043780 283 ILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHV 342 (386)
Q Consensus 283 lLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~v 342 (386)
+-+|+.|+.. | .+.+|-++||+.+++|..-|+..+-+.-..|+|+.. -..++-...
T Consensus 15 lr~l~~La~~-~--~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~-rG~~GGy~L 70 (162)
T 3k69_A 15 VHSILYLDAH-R--DSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT-VGKNGGYQL 70 (162)
T ss_dssp HHHHHHHHTT-T--TSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE-CSTTCEEEC
T ss_pred HHHHHHHHhC-C--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee-cCCCCCeEe
Confidence 3445555543 3 467999999999999999999999999999999754 344444433
No 143
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=49.55 E-value=32 Score=26.09 Aligned_cols=69 Identities=12% Similarity=0.038 Sum_probs=43.0
Q ss_pred HHHHHHhcccCChHHHHHHHHhcccccccc--CCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCC
Q 043780 120 MQIAMFKLEQGDRKECKKLLEDGKSTLDSM--TDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 120 ~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~--~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
..+|.++...|+++.|..|++++-...+.- .+.+ ....|...+..+-..|++.......-..+..-|.+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~---~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTID---KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSC---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCccc---HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 367889999999999999999876544321 1221 22233333334445778877766666666655543
No 144
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=49.44 E-value=26 Score=28.44 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCC
Q 043780 281 INILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQV 336 (386)
Q Consensus 281 irlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv 336 (386)
+-++.|..... .+..-+|.++||+.++++..+|-..+=+....|+|.=+-+..
T Consensus 36 ~vll~L~~~~~---~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 36 VLLLHMQSFFE---EGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTD 88 (128)
T ss_dssp HHHHHHHHHHT---TTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC---
T ss_pred HHHHHHHHHHh---cCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEEC
Confidence 45566665532 123458999999999999999999999999999998765543
No 145
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=48.66 E-value=34 Score=27.59 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=37.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEE--eecCCCCEEEE
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG--IIDQVEGTVHV 342 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G--~IDqv~~~v~v 342 (386)
..++..+||+.++++...|-..|=+....|+|.- .-|..++....
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~ 100 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLT 100 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeE
Confidence 4599999999999999999999999999999998 77777665433
No 146
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=48.60 E-value=1.6e+02 Score=26.96 Aligned_cols=128 Identities=8% Similarity=-0.070 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCC
Q 043780 55 LIQLYHNFITDFETKINLLKLAHFAVIVS---RQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGD 131 (386)
Q Consensus 55 ~~~ly~~fi~~f~~kin~l~l~~i~~~v~---~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~ 131 (386)
-++.|...+.-+..--++...+++...++ ....++++|++++++..+-.... .........+...+|.++...|+
T Consensus 120 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~y~~~~~ 197 (378)
T 3q15_A 120 AIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH--PLYSIRTIQSLFVIAGNYDDFKH 197 (378)
T ss_dssp HHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHHHHHhCC
Confidence 45555555544443334444444443333 34678999999998877666311 11122356666788999999999
Q ss_pred hHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 043780 132 RKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 186 (386)
Q Consensus 132 l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~ 186 (386)
++++.+.++++-....... ++...+..|.-.+..|...|++.+.-...-+.+.
T Consensus 198 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998887655433322 2334444444455556567777765444444443
No 147
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=48.34 E-value=1.3e+02 Score=25.61 Aligned_cols=95 Identities=15% Similarity=-0.065 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCC---hHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 88 EKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGD---RKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 88 d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~---l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
+.++|++.+++..+.- + ..+..+. ..+.++...|+ ++++...++++-.......+-+.......|...
T Consensus 157 ~~~~A~~~~~~a~~~~-----p--~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-----P--NIYIGYL--WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp CHHHHHHHHHHHHHHS-----T--TCHHHHH--HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-----c--cchHHHH--HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 7888888888765543 1 1233333 34555555566 666666666554443222211122233445555
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCCCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
+.+|...|++.......-+.+...|.+
T Consensus 228 ~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 228 AYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 666777888888777777777666543
No 148
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=48.15 E-value=42 Score=26.61 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=41.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|-..|=+....|+|.-.-|..++....-..++
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~ 99 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTD 99 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEECh
Confidence 46999999999999999999999999999999998887666554444443
No 149
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=48.08 E-value=1.7e+02 Score=26.88 Aligned_cols=128 Identities=9% Similarity=0.078 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHH---HhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCC
Q 043780 55 LIQLYHNFITDFETKINLLKLAHFAVIV---SRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGD 131 (386)
Q Consensus 55 ~~~ly~~fi~~f~~kin~l~l~~i~~~v---~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~ 131 (386)
-++.|..-+.-+..-=++...+.+.... .....++++|++++++..+..... .........+...+|.++...|+
T Consensus 122 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~ 199 (383)
T 3ulq_A 122 AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH--EAYNIRLLQCHSLFATNFLDLKQ 199 (383)
T ss_dssp HHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC--STTHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHHHHHhcC
Confidence 4555555554433323344344443333 334678999999998877766421 11123445566778899999999
Q ss_pred hHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 043780 132 RKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 186 (386)
Q Consensus 132 l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~ 186 (386)
++++.+.++++-...+... ++...+..|.-.+..|...|++.+.-...-+.+.
T Consensus 200 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998887765444332 2444454455566666678887765444444443
No 150
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=48.02 E-value=16 Score=25.49 Aligned_cols=27 Identities=4% Similarity=0.005 Sum_probs=23.7
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
...|+.+||+.+++|...|...+-+|.
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358999999999999999998887774
No 151
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=47.70 E-value=1e+02 Score=24.37 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHHHHHHhhhcc---ccCC------CchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATN---EQRK------EEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSV 156 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~---~~~~------~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v 156 (386)
..+.++|++..++..+.+.... .+.+ ......+-...+.+++..|+++++....+.+=.. +|.-
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~-------~p~~ 96 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR-------EETN 96 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTC
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------CCcc
Confidence 4578888888877665542110 0100 0112233455677788889999988887766432 1222
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCC
Q 043780 157 YANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 157 ~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~ 190 (386)
..+||+.+. .+...|+|.+.....-+.+..-|.
T Consensus 97 ~~a~~~~g~-~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 97 EKALFRRAK-ARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHHH-HHHHHhcHHHHHHHHHHHHhcCCC
Confidence 234444444 455678888877777776665543
No 152
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=47.28 E-value=91 Score=26.57 Aligned_cols=88 Identities=11% Similarity=-0.045 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSS 165 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s 165 (386)
..+.++|++.+++..+.- +.+ +.++ ...+.++...|+++++.+.++++-. ... ++.+.+..|...+
T Consensus 16 ~~~~~~A~~~~~~~l~~~-----p~~--~~~~--~~l~~~~~~~~~~~~A~~~~~~a~~-~~~----~~~~~~~~~~~lg 81 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKK-----YNS--PYIY--NRRAVCYYELAKYDLAQKDIETYFS-KVN----ATKAKSADFEYYG 81 (272)
T ss_dssp TTCHHHHHHHHHHHHHTT-----CCC--STTH--HHHHHHHHHTTCHHHHHHHHHHHHT-TSC----TTTCCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-----CCc--HHHH--HHHHHHHHHHhhHHHHHHHHHHHHh-ccC----chhHHHHHHHHHH
Confidence 346777777776654322 112 2222 2334466667777777776665543 221 1122222233344
Q ss_pred HHHHHhhcHHHHHHHHHHHhcc
Q 043780 166 QYHKFHQEFAEFYKCALLYLAY 187 (386)
Q Consensus 166 ~~~k~~~~~~~~y~~~l~yL~~ 187 (386)
..+...|++.+.-...-+.+..
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhc
Confidence 4455566666554444444443
No 153
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=47.09 E-value=1.3e+02 Score=25.19 Aligned_cols=104 Identities=9% Similarity=-0.034 Sum_probs=63.8
Q ss_pred cChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhcccccccc
Q 043780 70 INLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSM 149 (386)
Q Consensus 70 in~l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~ 149 (386)
.+|-.+...+..-. ...+.++|++++++..+.- +..++.++.. .+.++...|+++++.+.++.+-..
T Consensus 5 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~------~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~---- 71 (228)
T 4i17_A 5 TDPNQLKNEGNDAL-NAKNYAVAFEKYSEYLKLT------NNQDSVTAYN--CGVCADNIKKYKEAADYFDIAIKK---- 71 (228)
T ss_dssp CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT------TTCCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHT----
T ss_pred cCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcc------CCCCcHHHHH--HHHHHHHhhcHHHHHHHHHHHHHh----
Confidence 34544444444333 3458999999998875543 1133444443 688888899999999988876542
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCC
Q 043780 150 TDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 150 ~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~ 190 (386)
+|. +...|...+..+...|++.+.....-+.+...|.
T Consensus 72 ---~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 72 ---NYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp ---TCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ---Ccc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 122 2223344455566778888766666666665554
No 154
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.58 E-value=1.8e+02 Score=26.84 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=60.6
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSS 165 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s 165 (386)
..+.++++++.++....... .....-...+....|.++...|+++++.+.+.++-....... +......+|...+
T Consensus 108 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 182 (434)
T 4b4t_Q 108 PDSLDDQIFVCEKSIEFAKR---EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD--DKPSLVDVHLLES 182 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHHH---SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--CSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHH
Confidence 44788999888776554431 122222344556778899999999999999988765544433 2334456666777
Q ss_pred HHHHHhhcHHH---HHHHHHHH
Q 043780 166 QYHKFHQEFAE---FYKCALLY 184 (386)
Q Consensus 166 ~~~k~~~~~~~---~y~~~l~y 184 (386)
..|-..|+|.. +|+.++..
T Consensus 183 ~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 183 KVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHH
Confidence 77777777765 45555443
No 155
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=46.36 E-value=82 Score=23.49 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=47.7
Q ss_pred CCccChHHH----HHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHHH
Q 043780 297 DRTIPLSII----AERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVH 370 (386)
Q Consensus 297 ~r~isf~~I----a~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~ 370 (386)
+..++..+| |+.++++..-|-..|=+....|+|.-.-|.-...+.+| .-+.+-+..+...+..|...+.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT-----~~G~~~~~~~~~~~~~~~~~~~ 92 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLT-----EKGKLFAISLKTAIETYKQIKK 92 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEEC-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999 89999999999999988899999998888733223222 1233445555555555555443
No 156
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=46.31 E-value=23 Score=26.54 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=30.9
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEE
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG 331 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G 331 (386)
...|..|||++++++..-|..-+-..-..|+|+=
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 5799999999999999899999999999999864
No 157
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=46.24 E-value=55 Score=26.12 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=33.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIID 334 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ID 334 (386)
+..++.+|++.++++...|-..+=..-..|+|...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999999998889999998654
No 158
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=45.68 E-value=16 Score=36.55 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEE
Q 043780 279 EKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG 331 (386)
Q Consensus 279 ~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G 331 (386)
+.+.+|-++.+| +++-+.-+||+.+++|.+++...+-+....|||++
T Consensus 388 ~~~~~l~~L~~~------dG~~slldia~~~~~~~~~~~~~~~~l~~~~l~~~ 434 (435)
T 3k9t_A 388 DEFAMFWVLNMS------DGKNSLLDIAYKSGMEFRRIKYAADALYRVELLKL 434 (435)
T ss_dssp CHHHHHHHHHHC------EEEEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhc------cCCccHHHHHHHhCcCHHHHHHHHHHHHHccCccc
Confidence 346788888884 68999999999999999999999999999999985
No 159
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=44.88 E-value=1.7e+02 Score=26.15 Aligned_cols=155 Identities=10% Similarity=-0.002 Sum_probs=83.1
Q ss_pred HHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHH
Q 043780 82 VSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYY 161 (386)
Q Consensus 82 v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y 161 (386)
+.....++++|++.+++..+-... ..+......+...++.++.. |+++++....+++-...+... ++...+..|
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~---~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~ 158 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVE---NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--RLRQAAELI 158 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--ChhHHHHHH
Confidence 344556899999999887665421 11222234444566777777 999999888876654433221 233334445
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHhccCCCCCCChh---------------HHHHHHHHHHHHHhcCCCcccccccccChh
Q 043780 162 WVSSQYHKFHQEFAEFYKCALLYLAYTSVESLSDS---------------FKLDLAFDLSLSALLGDNIYNFGELLAHPI 226 (386)
Q Consensus 162 ~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~~~~~~---------------e~~~~a~~l~i~AL~~~~iy~FgeLl~~p~ 226 (386)
.-.+..|...|+|.+.-...-+.+...+....... ...+.|......++..|+
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~------------ 226 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPG------------ 226 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC------------
Confidence 55566666778877654444444433221111000 011223333333332221
Q ss_pred hhcccCCCcHHHHHHHHHHhcCCHHHHHHH
Q 043780 227 INSLTGTKVEWLYYILQAFNSGDLVRYQEL 256 (386)
Q Consensus 227 v~~L~~~~~~~l~~LL~~f~~G~l~~f~~~ 256 (386)
... .....-+..++.++..|+.+.|...
T Consensus 227 ~~~--~~e~~~l~~l~~~~~~~d~~~~~~~ 254 (307)
T 2ifu_A 227 FSG--SEDCAALEDLLQAYDEQDEEQLLRV 254 (307)
T ss_dssp STT--SHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCC--CHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 110 1122346778888999999999883
No 160
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=44.42 E-value=22 Score=32.26 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=36.9
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEE
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHV 342 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~v 342 (386)
+...+.++||+.+++|..+|+.-+-+....|+|+- ..+++|.|
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~---~~~~~~~~ 218 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKI---INDNTVVL 218 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEE---ETTTEEEE
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEE---ecCCeEEe
Confidence 57899999999999999999999999999999982 34455555
No 161
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=44.12 E-value=93 Score=22.85 Aligned_cols=88 Identities=11% Similarity=-0.051 Sum_probs=53.9
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++.+++..+.- ...+.+ ....+.++...|+++++.+.++++-..-+. ++ ..+...
T Consensus 28 ~~~~~~~A~~~~~~al~~~-------~~~~~~--~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~----~~~~~l 90 (133)
T 2lni_A 28 QKGDYPQAMKHYTEAIKRN-------PKDAKL--YSNRAACYTKLLEFQLALKDCEECIQLEPT----FI----KGYTRK 90 (133)
T ss_dssp HTTCSHHHHHHHHHHHTTC-------TTCHHH--HHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----CH----HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-------CCcHHH--HHHHHHHHHHhccHHHHHHHHHHHHHhCCC----ch----HHHHHH
Confidence 3457899999888754322 123333 355677888899999999988876543111 12 223333
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
+..+...|++.+.....-+.+...+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 4455567887776666666555433
No 162
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=43.71 E-value=2.3e+02 Score=27.35 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 043780 3 ALQYLESLRNDHPELGEWYNALADLYQK 30 (386)
Q Consensus 3 ~~~~L~~~~~~~p~~~~~~~~~~~l~~~ 30 (386)
+..++.......|+-...|..+-..|.+
T Consensus 358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 358 LYLISNDLVDRHPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 3455666666677666666666555543
No 163
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=43.62 E-value=21 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=22.1
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
.-.|+.+||+.++++...|...+-++.
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 357999999999999998887665553
No 164
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=43.26 E-value=87 Score=28.18 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=58.1
Q ss_pred cCCCcHHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhhhhHHHHHHHHHHHHHHHHHhhCCCCCCccChHHHHHHcC
Q 043780 231 TGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTK 310 (386)
Q Consensus 231 ~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~~~~~~l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~ 310 (386)
.+++-.-+..|=..+-.|++.+|=+..+...+.++..++| ++.+| -++..+++.++ ++|+.+.+++-|+
T Consensus 95 ~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf---~dsIR--~~I~~~i~~aY------~sI~~~~la~lLg 163 (226)
T 1rz4_A 95 EERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGF---EDSVR--KFICHVVGITY------QHIDRWLLAEMLG 163 (226)
T ss_dssp TSTTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTH---HHHHH--HHHHHHHHHHC------SEECHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHH---HHHHH--HHHHHHHHHHH------hhCCHHHHHHHHc
Confidence 3455566777888888999998877655444444444433 33443 35667777765 6899999999995
Q ss_pred -CChhHHHHHHHH
Q 043780 311 -LSIEDVEHLLMK 322 (386)
Q Consensus 311 -i~~~eVE~lvik 322 (386)
++.++++.|+-+
T Consensus 164 ~~s~~el~~fi~~ 176 (226)
T 1rz4_A 164 DLSDSQLKVWMSK 176 (226)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 789999999987
No 165
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=43.20 E-value=37 Score=26.17 Aligned_cols=69 Identities=22% Similarity=0.192 Sum_probs=38.4
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHhhccceEEe-ec-CCCCEEEEEeeccccCChhhHH-HHHHHHHHHHHHHHH
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI-ID-QVEGTVHVSWVQPRVLGIPQIK-SLRDRLDSWLGKVHT 371 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~-ID-qv~~~v~vt~v~~R~l~~~q~~-~L~~~L~~W~~~v~~ 371 (386)
.++-.+||+.++++...|-..+-+.-..|+|... .. ...+.....| .++.+++. .+..++..|.+++..
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~----~~~~~~i~~~~~~~~~~~~e~l~~ 104 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYW----KPNIDQINEILLNRKRLILDKLKT 104 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEE----ECTHHHHC----------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEe----ecCHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999875 21 2233333333 24455542 344556666665543
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=41.96 E-value=50 Score=24.82 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHH
Q 043780 88 EKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQY 167 (386)
Q Consensus 88 d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~ 167 (386)
+.++|++++++..+.- .++.....+....+.++...|+++++.+.++++-..-+. + ...++. .+..
T Consensus 5 ~~~~A~~~~~~al~~~------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~---~~~~~~-l~~~ 70 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASG------LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN----H---QALRVF-YAMV 70 (117)
T ss_dssp --CCCHHHHHHHHSSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C---HHHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHcC------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----c---hHHHHH-HHHH
Confidence 4567777776653320 001123344566788888999999999999877543222 1 223333 3444
Q ss_pred HHHhhcHHHHHHHHHHHhccCCCC
Q 043780 168 HKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 168 ~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
+...|++.+......+.+...|.+
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCc
Confidence 556788888777777777655543
No 167
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=41.68 E-value=1.6e+02 Score=24.73 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH
Q 043780 3 ALQYLESLRNDHPELGEWYNALADLY 28 (386)
Q Consensus 3 ~~~~L~~~~~~~p~~~~~~~~~~~l~ 28 (386)
+..++.+.....|+....+..+...|
T Consensus 56 A~~~~~~al~~~~~~~~~~~~la~~~ 81 (252)
T 2ho1_A 56 AKVPLRKALEIDPSSADAHAALAVVF 81 (252)
T ss_dssp GHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 45566666666776555555555444
No 168
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=41.22 E-value=1.8e+02 Score=25.36 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=34.7
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecC
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQ 335 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDq 335 (386)
+.+++.+|++.++++...|=..+=+....|+|...-+.
T Consensus 27 ~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 27 RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEK 64 (202)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeec
Confidence 46899999999999999999999999999999997763
No 169
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=40.93 E-value=19 Score=29.91 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=25.1
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
...+|+++||+.+|+|+..|...+-+|.
T Consensus 107 ~~g~s~~EIA~~lgis~~tV~~~l~rar 134 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEVDTSEVETLVTEAL 134 (157)
T ss_dssp SSCCCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3579999999999999999999998874
No 170
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=40.92 E-value=43 Score=25.18 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=35.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEE
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVS 343 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt 343 (386)
..++..+||+.++++..-|=.+|=+....|+|...-|.-...+.+|
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 4599999999999999999999999999999943333333334444
No 171
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=40.56 E-value=78 Score=23.65 Aligned_cols=35 Identities=17% Similarity=-0.005 Sum_probs=31.7
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHhhccceEEee
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGII 333 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~I 333 (386)
.+++.+|++.++++...|-..+=.....|+|...-
T Consensus 43 ~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 58999999999999999999999999999998643
No 172
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=40.42 E-value=21 Score=22.55 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.9
Q ss_pred ccChHHHHHHcCCChhHHHHHHHH
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMK 322 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvik 322 (386)
-+|+.+||+.++++..-|..++-+
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhh
Confidence 479999999999999999888744
No 173
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=39.88 E-value=99 Score=21.95 Aligned_cols=89 Identities=12% Similarity=-0.005 Sum_probs=56.0
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++++++..+.- ..++.++ ...+.++...|+++++...++++-..-+. ++ ..+...
T Consensus 16 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~----~~~~~~ 78 (118)
T 1elw_A 16 SVGNIDDALQCYSEAIKLD-------PHNHVLY--SNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WG----KGYSRK 78 (118)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------TTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CH----HHHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-------CCcHHHH--HHHHHHHHhhccHHHHHHHHHHHHHhCcc----cH----HHHHHH
Confidence 3457999999998765543 1223333 45577778889999999888876543221 12 223334
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~~ 190 (386)
+..+...|++.+.....-..+...|.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 45566688888777776666665443
No 174
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=39.43 E-value=71 Score=27.38 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccc-eEE
Q 043780 279 EKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHL-IEG 331 (386)
Q Consensus 279 ~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gL-I~G 331 (386)
..-|...++.+... +.+.+|.++||+.+++|...|-.-|-+.-..|+ |.+
T Consensus 19 ~~~R~~~Il~~L~~---~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 19 RQERLKSIVRILER---SKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHH---CSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHH---cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 44556666665543 236799999999999998877776665556788 875
No 175
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=39.32 E-value=1.8e+02 Score=26.31 Aligned_cols=100 Identities=10% Similarity=-0.038 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSS 165 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s 165 (386)
..++++|++.+++....... ..+......+....+.++...|+++++...+++.-...+...+.........+...+
T Consensus 66 ~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 142 (373)
T 1hz4_A 66 KGELTRSLALMQQTEQMARQ---HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 45789999999876655421 122233455667788889999999999988887654433222211122333344445
Q ss_pred HHHHHhhcHHHHHHHHHHHhccC
Q 043780 166 QYHKFHQEFAEFYKCALLYLAYT 188 (386)
Q Consensus 166 ~~~k~~~~~~~~y~~~l~yL~~~ 188 (386)
..+-..|++.+.-...-..+...
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 143 QLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHh
Confidence 55556788877655555555443
No 176
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=39.04 E-value=23 Score=28.64 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=24.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
..+|+.+||+.+|+|...|...+-+|+.
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999888753
No 177
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=38.00 E-value=1.4e+02 Score=23.12 Aligned_cols=96 Identities=10% Similarity=-0.040 Sum_probs=0.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHH
Q 043780 79 AVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYA 158 (386)
Q Consensus 79 ~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a 158 (386)
+..+.....+.++|++.+++..+.- .....+....+..+...|+++++.+.++++-..-+. +.
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~ 110 (186)
T 3as5_A 48 LGIAYVKTGAVDRGTELLERSLADA---------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI--------NF 110 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH--------hH
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCC
Q 043780 159 NYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 159 ~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
..+...+..+...|++.+.....-..+...+.+
T Consensus 111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
No 178
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=37.93 E-value=1.7e+02 Score=24.19 Aligned_cols=84 Identities=18% Similarity=0.107 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHH
Q 043780 55 LIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKE 134 (386)
Q Consensus 55 ~~~ly~~fi~~f~~kin~l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~ 134 (386)
-+++|+..+... -|+..+..+ ..+.....+.++|++.+++..+.-.. ..........+....+.++...|++++
T Consensus 24 A~~~~~~a~~~~---~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (258)
T 3uq3_A 24 AIEHYNKAWELH---KDITYLNNR-AAAEYEKGEYETAISTLNDAVEQGRE--MRADYKVISKSFARIGNAYHKLGDLKK 97 (258)
T ss_dssp HHHHHHHHHHHS---CCTHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhh---ccHHHHHHH-HHHHHHcccHHHHHHHHHHHHHhCcc--cccchHHHHHHHHHHHHHHHHcccHHH
Confidence 455566555544 233333333 33344566899999999887665421 011111124455667888889999999
Q ss_pred HHHHHHhccc
Q 043780 135 CKKLLEDGKS 144 (386)
Q Consensus 135 ~~~~l~~~~~ 144 (386)
+...++++-.
T Consensus 98 A~~~~~~a~~ 107 (258)
T 3uq3_A 98 TIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988887654
No 179
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=37.60 E-value=1.4e+02 Score=22.97 Aligned_cols=90 Identities=11% Similarity=0.040 Sum_probs=56.2
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
+..+.++|++..++..+.- ..++.++. ..|.++...|+++++...++.+-.. + |.-..+|+..
T Consensus 25 ~~g~~~~A~~~~~~al~~~-------p~~~~~~~--~~~~~~~~~~~~~~A~~~~~~al~~-~------p~~~~a~~~l- 87 (126)
T 4gco_A 25 KKGDYPTAMRHYNEAVKRD-------PENAILYS--NRAACLTKLMEFQRALDDCDTCIRL-D------SKFIKGYIRK- 87 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------TTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHH-C------TTCHHHHHHH-
T ss_pred HcCCHHHHHHHHHHHHHhC-------CCCHHHHH--HHhhHHHhhccHHHHHHHHHHHHHh-h------hhhhHHHHHH-
Confidence 4568999999888764332 23455553 4577778889999998888766432 1 1112233333
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCCCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
+..+...|++.+.....-+.|..-|.+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 445556888887776666666655543
No 180
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=37.31 E-value=1.3e+02 Score=23.64 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=35.7
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEE
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVS 343 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt 343 (386)
+..++..+||+.++++..-|-..|=+....|+|.-.= +.+.+|
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~----~~~~Lt 71 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE----DGVWIT 71 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEEC
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC----CeEEEC
Confidence 4679999999999999999999998889999998632 455555
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.87 E-value=1.3e+02 Score=22.52 Aligned_cols=92 Identities=9% Similarity=-0.028 Sum_probs=54.1
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++.+++..+.- +...-...+....+..+...|+++++...++.+-..-+. ++ ..++ ..
T Consensus 40 ~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~---~~~~-~~ 105 (148)
T 2dba_A 40 KCGDYGGALAAYTQALGLD------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG----DV---KALY-RR 105 (148)
T ss_dssp TTTCHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC----CH---HHHH-HH
T ss_pred HhCCHHHHHHHHHHHHHHc------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc----CH---HHHH-HH
Confidence 4458999999888764322 111111334455677788889999999888876543111 11 1222 33
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~~ 190 (386)
+..+...|++.+.....-+.+...|.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 44455677877766666666655443
No 182
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=36.83 E-value=1.8e+02 Score=28.45 Aligned_cols=90 Identities=13% Similarity=-0.017 Sum_probs=53.9
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCC-CCHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTD-IDPSVYANYYWV 163 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~-v~~~v~a~~y~~ 163 (386)
...+.++|+++.++..+.-...=.+.++ ..+-..-.++.++...|++++|..+.+..=...+..-| -.|.+-..|+.+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNV-YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhch-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3557899999988766544311122221 23334456777888899999999877765443332222 236666666666
Q ss_pred HHHHHHHhhcHHH
Q 043780 164 SSQYHKFHQEFAE 176 (386)
Q Consensus 164 ~s~~~k~~~~~~~ 176 (386)
+.- |..+|+|++
T Consensus 389 a~~-~~~qg~~~e 400 (433)
T 3qww_A 389 GRL-YMGLENKAA 400 (433)
T ss_dssp HHH-HHHTTCHHH
T ss_pred HHH-HHhccCHHH
Confidence 554 456777765
No 183
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=36.80 E-value=65 Score=22.90 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=32.0
Q ss_pred CCCccChHHHHHHcCCChhHHHHHHHHHhhccceE
Q 043780 296 EDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIE 330 (386)
Q Consensus 296 ~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~ 330 (386)
+.+.+-.+.+++..+++.++|=..+=+.=+.|||+
T Consensus 22 sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 22 NGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp TTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 46899999999999999999999999988899986
No 184
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=36.77 E-value=31 Score=29.07 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=33.4
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEE
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVS 343 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt 343 (386)
.++..+|++.++++...|=..|=+....|+|+-.-|..++....-
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~ 130 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASI 130 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCB
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEE
Confidence 499999999999999988888888889999999888776654433
No 185
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=36.68 E-value=1.1e+02 Score=23.26 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=38.8
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceE--EeecCCCCEEEEE
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIE--GIIDQVEGTVHVS 343 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~--G~IDqv~~~v~vt 343 (386)
+.-|+-.+|++.++++...|-..+=+....|||+ -.++..++.+++-
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~L 82 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYML 82 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEEE
Confidence 5689999999999999999999999999999999 4555445555544
No 186
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=36.21 E-value=1.6e+02 Score=27.63 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=40.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhhhccc-cCCCchHHHHHHHHHHHhcccCChHHHHHHHHhcccc
Q 043780 79 AVIVSRQYPEKQAAISYLEGVIEKLRATNE-QRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKST 145 (386)
Q Consensus 79 ~~~v~~~~~d~~~al~fl~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~ 145 (386)
+..+.....+.++|++.+++..+-...... +.+.. .+..-..+|.++...|+++++...++++...
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-THHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 344455566899999999887654432111 11111 2222344677888899999999888766543
No 187
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=36.19 E-value=91 Score=24.84 Aligned_cols=43 Identities=14% Similarity=-0.038 Sum_probs=35.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEE
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVS 343 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt 343 (386)
..++..+||+.++++..-|=..|=+....|+|.-.= ++.+.+|
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~---~~~~~LT 63 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK---YRGLVLT 63 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET---TTEEEEC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee---CceEEEc
Confidence 469999999999999999999999999999998652 2455555
No 188
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=36.15 E-value=43 Score=29.20 Aligned_cols=50 Identities=8% Similarity=-0.097 Sum_probs=39.1
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..++..+|++.++++...|=..|=+....|+|.-.-|..++....-..++
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 110 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTE 110 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECH
Confidence 36999999999999999999999999999999999998888776666654
No 189
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.08 E-value=31 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.0
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
-.|+++||+.++++..-|...+-++.
T Consensus 36 g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 36 GLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 58999999999999999998877664
No 190
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=35.88 E-value=69 Score=26.11 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhcc
Q 043780 276 KLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVH 327 (386)
Q Consensus 276 ~l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~g 327 (386)
.|-+.++++.++. +-.||.+||+.++++...|.. +-+++..|
T Consensus 61 aLs~R~eV~klL~---------~G~syreIA~~~g~S~aTIsR-v~r~L~~g 102 (119)
T 3kor_A 61 SLSQRLQVAKMIK---------QGYTYATIEQESGASTATISR-VKRSLQWG 102 (119)
T ss_dssp HHHHHHHHHHHHH---------HTCCHHHHHHHHCCCHHHHHH-HHHHHHSS
T ss_pred HHHHHHHHHHHHH---------cCCCHHHHHHHHCCCHHHHHH-HHHHHhcC
Confidence 4445577776653 239999999999999999887 66776654
No 191
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=35.59 E-value=1.6e+02 Score=23.05 Aligned_cols=54 Identities=11% Similarity=-0.059 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCccChHHHHHHc------C--CCh-hHHHHHHHHHhhccceEEeecC
Q 043780 276 KLLEKINILCLMEIIFSRPSEDRTIPLSIIAERT------K--LSI-EDVEHLLMKSLSVHLIEGIIDQ 335 (386)
Q Consensus 276 ~l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l------~--i~~-~eVE~lvikAi~~gLI~G~IDq 335 (386)
.++.++++..|.-|.. +..++.+|++.+ + ++. ..|-..+=+.-..|+|+..-+.
T Consensus 9 ~~~~~~~~~IL~~L~~------~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~ 71 (118)
T 2esh_A 9 FRGWWLASTILLLVAE------KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDT 71 (118)
T ss_dssp HHHHHHHHHHHHHHHH------SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEEC
T ss_pred cccchHHHHHHHHHHc------CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeec
Confidence 3445555555555542 468889999998 3 888 8899999999999999998764
No 192
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=34.77 E-value=28 Score=28.07 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=37.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLG 367 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~ 367 (386)
..++..+||+.++++...|=..|=+....|+|.-.-|..++....-..++. +.+-+..+......|..
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~--G~~~~~~~~~~~~~~~~ 123 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPK--GAALVEEFNNIFLEVEE 123 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHH--HHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999988888876554444432 23334444444444433
No 193
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=34.51 E-value=33 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
.-.|+.+||+.++++..-|...+-+++.
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999988877653
No 194
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.38 E-value=30 Score=29.09 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=25.1
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
..+|+++||+.+|+|+..|...+-+|..
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRARE 182 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999988853
No 195
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=34.37 E-value=2.8e+02 Score=25.51 Aligned_cols=159 Identities=10% Similarity=-0.048 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhcCchhHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 043780 2 AALQYLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVI 81 (386)
Q Consensus 2 ~~~~~L~~~~~~~p~~~~~~~~~~~l~~~KLWhqLt~~l~~~~~~~~~~~~~~~~~ly~~fi~~f~~kin~l~l~~i~~~ 81 (386)
.+..++.+.....|.-...+..+-+.|.+ ....+.-++.|+..+....+. ......+..
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~ 219 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIK------------------EGEPRKAISDLKAASKLKNDN---TEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCGGGGHHHHHHHHHHHCSC---HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q ss_pred HHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHH---------HHHHHHhcccCChHHHHHHHHhccccccccCCC
Q 043780 82 VSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIK---------MQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDI 152 (386)
Q Consensus 82 v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~---------~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v 152 (386)
+.....+.++|++.+++..+.- ++........ +..+..+...|+++++...++++-..-+.
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---- 289 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD------QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS---- 289 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS----
T ss_pred HHHHcCCHHHHHHHHHHHHHhC------CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----
Q ss_pred CHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCC
Q 043780 153 DPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 153 ~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
++......|...+..+...|++.+.....-..+...|.+
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 328 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
No 196
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=33.97 E-value=37 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
.-.|+.+||+.++++...|...+-++.
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999999988877764
No 197
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=33.51 E-value=68 Score=24.35 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=32.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIID 334 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ID 334 (386)
+..++.+|++.++++...|-+.+-..-.. +|..+-+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 56999999999999999999998888888 9998755
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=33.39 E-value=2.3e+02 Score=26.66 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=55.2
Q ss_pred cCCChHHHHHHHHHHHHHhhhcc-------ccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATN-------EQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVY 157 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~ 157 (386)
...+.++|++.+++..+...... ..........+....+.+++..|++++|.+.++++-.. ++.-.
T Consensus 235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-------~p~~~ 307 (370)
T 1ihg_A 235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-------DPSNT 307 (370)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CTTCH
T ss_pred HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-------CchhH
Confidence 34578899988877665332100 00001112334455677788889999998888776442 12222
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCC
Q 043780 158 ANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 158 a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~ 190 (386)
.++|..+. .|...++|.+.....-+.+...|.
T Consensus 308 ~a~~~lg~-~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 308 KALYRRAQ-GWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCC
Confidence 33444443 344577887766666666655443
No 199
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=32.70 E-value=32 Score=25.81 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.1
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
-.|+.+||+.++++..-|...+-+++
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 58999999999999999998877764
No 200
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.15 E-value=68 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=24.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
...|+.+||+.+++|..-|...+-+|.
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 469999999999999999998888874
No 201
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=31.47 E-value=1.3e+02 Score=24.47 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=30.5
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
...++-.+||+.++++...|=..|=+....|||+ +-|..++....-..++
T Consensus 50 ~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~DrR~~~v~LT~ 99 (148)
T 4fx0_A 50 GIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADARCKRIELTA 99 (148)
T ss_dssp ----CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC------------CCBCH
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCCCeeEEEECH
Confidence 4679999999999999999999988888999996 5677777665554444
No 202
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=31.02 E-value=80 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=32.8
Q ss_pred CccChHHHHHHc--CCChhHHHHHHHHHhhccceEEe
Q 043780 298 RTIPLSIIAERT--KLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 298 r~isf~~Ia~~l--~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
..+|..+||+.+ +++..-|-.-+-+.-..|||++.
T Consensus 26 g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 26 GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 589999999999 99999999999999999999985
No 203
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=30.80 E-value=2.6e+02 Score=24.10 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=25.9
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccc
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKS 144 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~ 144 (386)
..+.++|++.+++..+.-. .. +..+ ..++..+...|+++++.+.++++-.
T Consensus 138 ~~~~~~A~~~~~~a~~~~~-----~~--~~~~--~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMK-----GC--HLPM--LYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTT-----TC--SHHH--HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhcc-----cc--HHHH--HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3466777777666544331 11 1222 2245555566666666666665543
No 204
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=30.78 E-value=64 Score=19.37 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043780 356 KSLRDRLDSWLGKVHTALLSIEAETP 381 (386)
Q Consensus 356 ~~L~~~L~~W~~~v~~~~~~l~~~~~ 381 (386)
+.++.-|.+-+.+|+++++.++....
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~~~ 27 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKIEK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46788899999999999999987654
No 205
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=30.23 E-value=2.1e+02 Score=22.83 Aligned_cols=71 Identities=8% Similarity=0.121 Sum_probs=51.7
Q ss_pred CCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHH
Q 043780 296 EDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKV 369 (386)
Q Consensus 296 ~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v 369 (386)
+.+--|-.++|+.++|+..-|-.-+-..-..|+|..+ + ++-..|+...++.....++..++..|.......
T Consensus 35 G~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~-g~G~~V~~~~~~~~~~~~~~~~r~~l~~~~~~~ 105 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--K-GKGTFIANQTDKLSSPKKLAETRTKLKETILDL 105 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T-TTEEEECCCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--c-CcEEEEeCCchhhccHHHHHHHHHHHHHHHHHH
Confidence 4444488999999999999999999999999999865 2 233445545555666677777777777665443
No 206
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=30.14 E-value=2.4e+02 Score=23.47 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=30.0
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccc
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKS 144 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~ 144 (386)
...+.++|++.+++..+.- ...+.++ ...+..+...|+++++.+.++++-.
T Consensus 83 ~~~~~~~A~~~~~~a~~~~-------~~~~~~~--~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASD-------SRNARVL--NNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------TTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHHC-------cCcHHHH--HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3456777777777654432 1123333 3445666667777777777776544
No 207
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=29.89 E-value=1.6e+02 Score=21.23 Aligned_cols=88 Identities=11% Similarity=-0.046 Sum_probs=55.4
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++++++..+.- ...+.+ ....+.++...|+++++...++.+-..-+. ++ ..+...
T Consensus 24 ~~~~~~~A~~~~~~~~~~~-------~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~----~~~~~~ 86 (131)
T 2vyi_A 24 KVENFEAAVHFYGKAIELN-------PANAVY--FCNRAAAYSKLGNYAGAVQDCERAICIDPA----YS----KAYGRM 86 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH----HHHHHH
T ss_pred HccCHHHHHHHHHHHHHcC-------CCCHHH--HHHHHHHHHHhhchHHHHHHHHHHHhcCcc----CH----HHHHHH
Confidence 3558999999998875543 122333 355677778889999999988876543111 12 223344
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
+..+...|++.+.....-+.+...|
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 5556667888776666666665544
No 208
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=29.57 E-value=44 Score=25.92 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=21.1
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHH
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKS 323 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikA 323 (386)
-.++++||+.++++...|...+-++
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri 73 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSA 73 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999887766554
No 209
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=29.42 E-value=1.2e+02 Score=27.45 Aligned_cols=69 Identities=6% Similarity=-0.020 Sum_probs=40.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALL 374 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~~~~~ 374 (386)
..++..+||+.+++|...|-..+=+....|+|+.. ...+.+.+| ++- .++..+...+--|.+--..+..
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT---~~G---~~l~~~~~~~~~w~~aq~~~~~ 233 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELN---ELG---LNVIKLNKSVIESSKSSEELVK 233 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEEC---HHH---HHHHHHTC--------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEEC---HHH---HHHHHHHhcccccHHHHHHHHh
Confidence 46999999999999999999999999999999986 334445544 111 1233455666667665555443
No 210
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=29.28 E-value=36 Score=27.95 Aligned_cols=41 Identities=17% Similarity=0.423 Sum_probs=35.0
Q ss_pred HHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHHHH
Q 043780 305 IAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHT 371 (386)
Q Consensus 305 Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~~ 371 (386)
|+++++||.+|++..+|+- ++..-+..|+.+..+|+-+|..
T Consensus 28 lSk~lgis~ee~~~I~~~k--------------------------lDmssLe~lha~~E~Ak~~cl~ 68 (126)
T 1nxh_A 28 LSRELEIDVEEFQDILMDK--------------------------LDMSSLEALHPRFESARPRCIR 68 (126)
T ss_dssp TTTTGGGTHHHHHHHHHHH--------------------------SCHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHH--------------------------cchhhHHHhhHHHHHHhhhhHH
Confidence 6899999999999999974 4778888999999999877743
No 211
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=29.13 E-value=2.3e+02 Score=23.01 Aligned_cols=96 Identities=7% Similarity=-0.018 Sum_probs=56.0
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCch---------HHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEP---------ILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPS 155 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a---------~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~ 155 (386)
...+.++|++.+++..+.... .+..... ...+....+.++...|+++++...++.+-..-+.
T Consensus 50 ~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------- 120 (198)
T 2fbn_A 50 KKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN------- 120 (198)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------
T ss_pred HcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-------
Confidence 345789999988887654421 0000011 1234456677888899999999888876543111
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCC
Q 043780 156 VYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 156 v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~ 190 (386)
-...+|.. +..+...|+|.+.....-+.+...|.
T Consensus 121 ~~~~~~~l-g~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 121 NVKALYKL-GVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp CHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHH-HHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 12233333 44455678887766666666655443
No 212
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=29.05 E-value=49 Score=23.12 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.7
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
..|+.+||+.++++...|...+-++.
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46999999999999998887776653
No 213
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=29.05 E-value=2.1e+02 Score=22.46 Aligned_cols=90 Identities=9% Similarity=-0.061 Sum_probs=58.1
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++.+++..+.- ...+.++ ...+.++...|+++++...++.+-..-+. -...+| ..
T Consensus 23 ~~g~~~~A~~~~~~al~~~-------p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~-~l 85 (164)
T 3sz7_A 23 ARKEYSKAIDLYTQALSIA-------PANPIYL--SNRAAAYSASGQHEKAAEDAELATVVDPK-------YSKAWS-RL 85 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHS-------TTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHH-HH
T ss_pred HcCCHHHHHHHHHHHHHhC-------CcCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHH-HH
Confidence 4558999999998765443 2234444 45677788889999999988876543111 122333 34
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCCCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
+..+...|++.+.....-+.+...|.+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 555566888888777777777665544
No 214
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=28.79 E-value=1e+02 Score=23.25 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.9
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
-.++.+||+.++++...|+..+-+++
T Consensus 44 G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 44 GFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 58999999999999999998877764
No 215
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=28.30 E-value=3.9e+02 Score=25.39 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=37.9
Q ss_pred HHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 284 LCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 284 LaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
..+++..|..| .++-+++++.++++...+...+-+....|+|+-.
T Consensus 300 ~~ll~~l~~~p----~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~ 344 (373)
T 2qc0_A 300 HELVQVIFEQP----YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEV 344 (373)
T ss_dssp HHHHHHHHHCS----EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC
T ss_pred HHHHHHHHhCC----cccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEe
Confidence 55777777654 5788899999999999999999999999999843
No 216
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=28.26 E-value=94 Score=24.70 Aligned_cols=96 Identities=8% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHH
Q 043780 79 AVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYA 158 (386)
Q Consensus 79 ~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a 158 (386)
+..+.+.-.|.+.|++.+++. -..+.-.-.....+|.++...|+++++.+.++++-..-+. +.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a---------~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--------~~ 65 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGS---------TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--------DP 65 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHH---------SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CH
T ss_pred hHHHHHHcChHHHHHHHHHHh---------cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CH
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCC
Q 043780 159 NYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 159 ~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
..|...+..|...|++.+.....-+.+..-|.+
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELNPTQ 98 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
No 217
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=28.22 E-value=1.1e+02 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=32.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+.++..+|++.+++|...|-.++-.....|+|.-.
T Consensus 22 ~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 22 GDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 47999999999999999999999999999999875
No 218
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=27.84 E-value=3e+02 Score=23.90 Aligned_cols=94 Identities=11% Similarity=-0.065 Sum_probs=60.3
Q ss_pred hcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHH
Q 043780 84 RQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWV 163 (386)
Q Consensus 84 ~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~ 163 (386)
....+.++|++.+++..+.- +.+...........+.++...|+++++...++++-..-+. ++ ..|..
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~----~~~~~ 311 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD----NV----NALKD 311 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH----HHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cH----HHHHH
Confidence 34568899999988776544 2222222233456788888999999999998877543111 12 23344
Q ss_pred HHHHHHHhhcHHHHHHHHHHHhccCCC
Q 043780 164 SSQYHKFHQEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 164 ~s~~~k~~~~~~~~y~~~l~yL~~~~~ 190 (386)
.+..+...|++.+.....-+.+...|.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 455666788888777777776666554
No 219
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=27.77 E-value=2.4e+02 Score=28.01 Aligned_cols=89 Identities=4% Similarity=-0.116 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhcccccccc-CCCCHHHHHHHHHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSM-TDIDPSVYANYYWVS 164 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~-~~v~~~v~a~~y~~~ 164 (386)
-.+.++|+++.++..+.-...-.+.++ ..+-..-.++.++...|++++|..+.+.+=...... ..-.|.+-..++.++
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp-~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNL-YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 347889999888776654321122222 234445667778888999999988777543332221 122366666666665
Q ss_pred HHHHHHhhcHHH
Q 043780 165 SQYHKFHQEFAE 176 (386)
Q Consensus 165 s~~~k~~~~~~~ 176 (386)
.-| ..+|+|.+
T Consensus 401 ~~~-~~~G~~~e 411 (490)
T 3n71_A 401 LTN-WHAGHIEV 411 (490)
T ss_dssp HHH-HHTTCHHH
T ss_pred HHH-HHCCCHHH
Confidence 554 45777654
No 220
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.40 E-value=50 Score=26.23 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=24.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
.-.|+.+||+.+++|..-|...+-+|.
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 368999999999999999999988875
No 221
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=27.33 E-value=2.2e+02 Score=22.21 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCccChHHHHHHc--------CCChhHHHHHHHHHhhccceEEeecC-CCC-EEEEEee
Q 043780 276 KLLEKINILCLMEIIFSRPSEDRTIPLSIIAERT--------KLSIEDVEHLLMKSLSVHLIEGIIDQ-VEG-TVHVSWV 345 (386)
Q Consensus 276 ~l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l--------~i~~~eVE~lvikAi~~gLI~G~IDq-v~~-~v~vt~v 345 (386)
.++-.+.++-|.-|+ . +....-+|.+.+ +++...|-..+=+.-..|+|+..-+. .++ .-.+-
T Consensus 8 ~~~g~l~~~IL~~L~-~-----~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y-- 79 (116)
T 3f8b_A 8 MLRAQTNVILLNVLK-Q-----GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYY-- 79 (116)
T ss_dssp HHHHHHHHHHHHHHH-H-----CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEE--
T ss_pred HHhchHHHHHHHHHH-h-----CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEE--
Confidence 344445554444443 2 456777777776 68889999999999999999998652 111 11111
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043780 346 QPRVLGIPQIKSLRDRLDSWLGKVHTALLSIE 377 (386)
Q Consensus 346 ~~R~l~~~q~~~L~~~L~~W~~~v~~~~~~l~ 377 (386)
.++..-.+.+......|..-...+...+.
T Consensus 80 ---~LT~~G~~~l~~~~~~~~~~~~~i~~il~ 108 (116)
T 3f8b_A 80 ---RLTEIGHENMRLAFESWSRVDKIIENLEA 108 (116)
T ss_dssp ---EECHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---EECHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 13455556666666666665555555443
No 222
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=26.85 E-value=2e+02 Score=21.39 Aligned_cols=88 Identities=8% Similarity=-0.036 Sum_probs=54.4
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++.+++..+.- ...+.++ ...+.++...|+++++...++.+-..-+. ++ ..++ ..
T Consensus 21 ~~~~~~~A~~~~~~al~~~-------~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~---~~~~-~l 83 (137)
T 3q49_B 21 VGRKYPEAAACYGRAITRN-------PLVAVYY--TNRALCYLKMQQPEQALADCRRALELDGQ----SV---KAHF-FL 83 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------TTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH---HHHH-HH
T ss_pred HhCcHHHHHHHHHHHHhhC-------cCcHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHhCch----hH---HHHH-HH
Confidence 3458999999988765543 1234444 45577788889999999888876543111 11 2233 33
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
+..+...|++.+.....-+.+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 4455567888776666666665443
No 223
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=26.82 E-value=3.8e+02 Score=25.07 Aligned_cols=61 Identities=3% Similarity=0.015 Sum_probs=42.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhcccc
Q 043780 78 FAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKST 145 (386)
Q Consensus 78 i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~ 145 (386)
++..+.....++++|++.+.+. +. .......+-+....+++++..|+.+.+++.+++....
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~---i~----~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEG---ID----NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH---HT----SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH---hc----cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4445555567899999999774 21 0001235556677888999999999999999887654
No 224
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=26.76 E-value=30 Score=23.06 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.4
Q ss_pred ccChHHHHHHcCCChhHHHHHH
Q 043780 299 TIPLSIIAERTKLSIEDVEHLL 320 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lv 320 (386)
-.|+.+||+.++++..-|-.++
T Consensus 31 g~s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 4699999999999999887765
No 225
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=26.58 E-value=4.4e+02 Score=25.34 Aligned_cols=89 Identities=7% Similarity=-0.019 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhccc--------CChHHHHHHHHhccccccccCCCCHHHHH
Q 043780 87 PEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQ--------GDRKECKKLLEDGKSTLDSMTDIDPSVYA 158 (386)
Q Consensus 87 ~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~--------~~l~~~~~~l~~~~~~l~~~~~v~~~v~a 158 (386)
.+.++|++.+++..+.- ..++..+. ..+..+... |+++++...++.+-..-+.. .-+.
T Consensus 193 g~~~~A~~~~~~al~~~-------p~~~~~~~--~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 258 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMD-------VLDGRSWY--ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA-----SSNP 258 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-------TTCHHHHH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG-----GGCH
T ss_pred hhHHHHHHHHHHHHHhC-------CCCHHHHH--HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc-----ccCH
Confidence 56778888887755432 22344443 345555555 78888888888765431100 0112
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHhccCC
Q 043780 159 NYYWVSSQYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 159 ~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
..|...+..|...|+|.+.....-+.+..-|
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 2333445556667888776666555555444
No 226
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=26.36 E-value=3.1e+02 Score=23.57 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=57.9
Q ss_pred HHhcCCChHHHHHHHHHHHHHhhhccccC--CCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHH
Q 043780 82 VSRQYPEKQAAISYLEGVIEKLRATNEQR--KEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYAN 159 (386)
Q Consensus 82 v~~~~~d~~~al~fl~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~ 159 (386)
+.....+.++|++.+++..+.......+. ...+.++ ...+.++...|+++++...++++-..-+. ++ .
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~----~ 271 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL--NNLGHVCRKLKKYAEALDYHRQALVLIPQ----NA----S 271 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CS----H
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhhCcc----ch----H
Confidence 33445678888888888776653211111 1223333 45677888899999999998877543222 11 2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHhccCC
Q 043780 160 YYWVSSQYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 160 ~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
.+...+..+...|++.+.....-+.+...|
T Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 272 TYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 233345556667887766555555554443
No 227
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.99 E-value=2.7e+02 Score=30.18 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=58.9
Q ss_pred HHHHHhcccCChHHHHHHHHhccccccccC---CCC------------HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 043780 121 QIAMFKLEQGDRKECKKLLEDGKSTLDSMT---DID------------PSVYANYYWVSSQYHKFHQEFAEFYKCALLYL 185 (386)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~---~v~------------~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL 185 (386)
..|+.+|..|+.++|-..+.++...+..-. .++ ...++.||.-++..++..+-|..--.++.+.|
T Consensus 845 v~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 845 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 358999999999999999987765442110 010 12355799999999999999888888888888
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHH
Q 043780 186 AYTSVESLSDSFKLDLAFDLSLSA 209 (386)
Q Consensus 186 ~~~~~~~~~~~e~~~~a~~l~i~A 209 (386)
++.+.++ .....++-.++..+|
T Consensus 925 ~~~~~dd--~~l~~~l~~r~f~~a 946 (950)
T 4gq2_M 925 ASKETDD--EDLSIAITHETLKTA 946 (950)
T ss_dssp HTCCSCC--HHHHHHHHHHHHHHH
T ss_pred hhcccCC--ccchHHHHHHHHHHH
Confidence 8775443 333334444544444
No 228
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.84 E-value=2.1e+02 Score=27.69 Aligned_cols=105 Identities=18% Similarity=0.103 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhchhhcCchhHHHHHHHHHHHHHhhcChHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHhhhcccc
Q 043780 33 WHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSR---QYPEKQAAISYLEGVIEKLRATNEQ 109 (386)
Q Consensus 33 WhqLt~~l~~~~~~~~~~~~~~~~~ly~~fi~~f~~kin~l~l~~i~~~v~~---~~~d~~~al~fl~~~~~~~~~~~~~ 109 (386)
|-..+..+-+++-+- ..-+..+++|......-. .+=..+++++.+.+ ...|...+...++++...+. ..
T Consensus 130 ~~~~~~~la~~~~~~--Gd~~~A~~~~~~~~~~~~---~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~---~~ 201 (429)
T 4b4t_R 130 QAQAWINLGEYYAQI--GDKDNAEKTLGKSLSKAI---STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE---KG 201 (429)
T ss_dssp CSSCCHHHHHHHHHH--CCCTTHHHHHHHHHHHHT---CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh---cC
Confidence 555555555555442 111234566655433221 11122334443333 34588889999999887774 23
Q ss_pred CCCchHHHHHHHHHHHhcccCChHHHHHHHHhcccc
Q 043780 110 RKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKST 145 (386)
Q Consensus 110 ~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~ 145 (386)
.+.+-...++...|.+++..+++.++-+.+-++-.+
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 344555678888999999999999877655554333
No 229
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=25.49 E-value=1.1e+02 Score=27.34 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=38.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCCh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGI 352 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~ 352 (386)
+.++..+|++.+++|...|-.++-.....|+|.-. ..++...+ .||.+..
T Consensus 20 ~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~--~~~~~Y~l---g~~~~~l 69 (241)
T 2xrn_A 20 HGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL--GPAGGFRL---GPALGQL 69 (241)
T ss_dssp TCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEEC--GGGCEEEE---CSHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCCeEEE---CHHHHHH
Confidence 47999999999999999999999999999999863 33455443 3454433
No 230
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.09 E-value=2.3e+02 Score=24.07 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=41.2
Q ss_pred cChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHH
Q 043780 300 IPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRD 360 (386)
Q Consensus 300 isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~ 360 (386)
..|.+||++++=+++.|=.++..-++. .|+||..++.+.|. -.++..+++.+-+
T Consensus 44 ~Nf~dIak~L~R~p~hv~ky~~~ELGt---~g~id~~~~rlii~----G~~~~~~i~~~L~ 97 (157)
T 2e9h_A 44 VNMVDVAKALNRPPTYPTKYFGCELGA---QTQFDVKNDRYIVN----GSHEANKLQDMLD 97 (157)
T ss_dssp TTHHHHHHHTTSCTHHHHHHHHHHHTC---CEEEETTTTEEEEE----BCCCHHHHHHHHH
T ss_pred EcHHHHHHHHCCCHHHHHHHHHHHhCC---ceeecCCCCEEEEE----eeeCHHHHHHHHH
Confidence 379999999999999988888877664 69999888887776 3356665554433
No 231
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=25.07 E-value=88 Score=26.87 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
..+|+++||+.+|+|...|...+-+|+
T Consensus 202 ~g~s~~EIA~~lgis~~~V~~~~~ra~ 228 (239)
T 1rp3_A 202 EELPAKEVAKILETSVSRVSQLKAKAL 228 (239)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 479999999999999999998887774
No 232
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=24.76 E-value=1.3e+02 Score=20.75 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=31.1
Q ss_pred cChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEE
Q 043780 300 IPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVS 343 (386)
Q Consensus 300 isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt 343 (386)
..|.+||+.++=|++.|=.++.+=++. .|+|| ++...|.
T Consensus 12 ~Nf~~Ia~~L~R~p~hv~ky~~~ELGt---~g~id--~~rlii~ 50 (52)
T 1k8b_A 12 RNFRELAKAVNRDEEFFAKYLLKETGS---AGNLE--GGRLILQ 50 (52)
T ss_dssp CCHHHHHHHHHTCHHHHHHHHHHHHSS---EEEEE--TTEEEEE
T ss_pred ECHHHHHHHHCCCHHHHHHHHHHHhCC---Ceeec--CCEEEEe
Confidence 479999999999999988888876554 68898 6666554
No 233
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=24.32 E-value=2.4e+02 Score=21.49 Aligned_cols=88 Identities=10% Similarity=-0.019 Sum_probs=51.6
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++.+++..+.- ...+.++ ...+.++...|+++++...++.+-..-+. .+ ..|...
T Consensus 25 ~~~~~~~A~~~~~~al~~~-------~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~----~~~~~~ 87 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIELN-------PSNAIYY--GNRSLAYLRTECYGYALGDATRAIELDKK----YI----KGYYRR 87 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-------TTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH----HHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-------CCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCcc----cH----HHHHHH
Confidence 3557888988888765432 1223333 45577777889999998888776543211 11 123333
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccCC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
+..+...|++.+.....-+.+...|
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4455567777765555555554443
No 234
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=24.03 E-value=3e+02 Score=22.51 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=24.1
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhcc
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGK 143 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~ 143 (386)
..+.++|++++++..+.- ...+.+ ....+.++...|+++++.+.++++-
T Consensus 138 ~~~~~~A~~~~~~~~~~~-------~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELN-------ENDTEA--RFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp TSCHHHHHHHHHHHHHHC-------TTCHHH--HHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-------CccHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445666666665543332 111222 2344555555666666666655543
No 235
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=24.02 E-value=87 Score=28.66 Aligned_cols=56 Identities=13% Similarity=0.261 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEE
Q 043780 281 INILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHV 342 (386)
Q Consensus 281 irlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~v 342 (386)
-|-+.++++.... .+.++..+|++.+++|...|-.++-.....|+|.- |. ++...+
T Consensus 30 ~Ral~IL~~l~~~---~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~--~~-~~~Y~L 85 (275)
T 3mq0_A 30 RRAVRILDLVAGS---PRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLAR--SA-DGTLRI 85 (275)
T ss_dssp HHHHHHHHHHHHC---SSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEE--CT-TSEEEE
T ss_pred HHHHHHHHHHhhC---CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--CC-CCcEEe
Confidence 3445555544432 35799999999999999999999999999999974 33 355444
No 236
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=23.77 E-value=1.4e+02 Score=23.03 Aligned_cols=31 Identities=16% Similarity=-0.009 Sum_probs=26.2
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhcc
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVH 327 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~g 327 (386)
...+|+.++|+..+|+..++..|+=.-...|
T Consensus 47 ~g~~s~~e~arry~Is~s~i~~W~r~~~~~G 77 (95)
T 2jrt_A 47 HGLITEREALDRYSLSEEEFALWRSAVAAHG 77 (95)
T ss_dssp TTSSCHHHHHHHTTCCHHHHHHHHHHTTTCC
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999986654444
No 237
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=23.72 E-value=2.2e+02 Score=21.01 Aligned_cols=72 Identities=8% Similarity=0.046 Sum_probs=47.1
Q ss_pred cChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccc
Q 043780 70 INLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKS 144 (386)
Q Consensus 70 in~l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~ 144 (386)
+++....+|+....+ ..+...|+..++................+.++ ...+..+...|+++.+....+++-.
T Consensus 3 Lsa~dc~~lG~~~~~-~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~--~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVL--DYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-ccchHHHHHHHHHHHHhhhccCCCcccHHHHH--HHHHHHHHHccCHHHHHHHHHHHHh
Confidence 445555555555554 45899999999998877742111122344455 5556777788999999998887754
No 238
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.48 E-value=2.3e+02 Score=20.94 Aligned_cols=87 Identities=10% Similarity=-0.040 Sum_probs=53.7
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
...+.++|++.+++..+.- ...+.++ ...+.++...|+++++...++.+-..-+ .....++ ..
T Consensus 16 ~~~~~~~A~~~~~~al~~~-------p~~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~-~l 78 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMIKRA-------PEDARGY--SNRAAALAKLMSFPEAIADCNKAIEKDP-------NFVRAYI-RK 78 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------TTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHH-HH
T ss_pred HhcCHHHHHHHHHHHHHhC-------CCChHHH--HHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CcHHHHH-HH
Confidence 3458999999988765433 2234444 4457777788999999988887654311 1122333 33
Q ss_pred HHHHHHhhcHHHHHHHHHHHhccC
Q 043780 165 SQYHKFHQEFAEFYKCALLYLAYT 188 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL~~~ 188 (386)
+..+...|++.+.....-+.+...
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhC
Confidence 445556788877666666655543
No 239
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=23.37 E-value=3.3e+02 Score=22.76 Aligned_cols=122 Identities=9% Similarity=-0.021 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccC
Q 043780 71 NLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMT 150 (386)
Q Consensus 71 n~l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~ 150 (386)
+|-.+...+....+.= +.++|++.++++.+.- +...-..-.....+..+...|+++++...++.+-..-++
T Consensus 3 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~~~~~~------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-- 73 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDG-NWRQAITQLEALDNRY------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-- 73 (225)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC------TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--
Q ss_pred CCCHHHHHHHHHHHHHHHHH-----------------hhcHHHHHHHHHHHhccCCCCCCChhHHHHHHH
Q 043780 151 DIDPSVYANYYWVSSQYHKF-----------------HQEFAEFYKCALLYLAYTSVESLSDSFKLDLAF 203 (386)
Q Consensus 151 ~v~~~v~a~~y~~~s~~~k~-----------------~~~~~~~y~~~l~yL~~~~~~~~~~~e~~~~a~ 203 (386)
++.+..++|.....+++. .|++.+.....-..+.-.|.+......+..++.
T Consensus 74 --~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 74 --HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp --CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
No 240
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=23.06 E-value=2.7e+02 Score=21.72 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=51.9
Q ss_pred CccChHHHHHHcC------CChhHHHHHHHHHhhccceEEeecCC-CCEEEEEeeccccCChhhHHHHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTK------LSIEDVEHLLMKSLSVHLIEGIIDQV-EGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVH 370 (386)
Q Consensus 298 r~isf~~Ia~~l~------i~~~eVE~lvikAi~~gLI~G~IDqv-~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~ 370 (386)
+....-+|++.++ ++...|-..+=+.-..|+|...-+.. ++.-...+ .++..-.+.+...+..|..-..
T Consensus 21 ~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y----~LT~~G~~~l~~~~~~~~~~~~ 96 (115)
T 4esb_A 21 EEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYY----HITDKGLEQLEEFKQSWGMVST 96 (115)
T ss_dssp SCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEE----EECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEE----EECHHHHHHHHHHHHHHHHHHH
Confidence 4577888888874 88899999999999999999986532 22111111 1355556666666777776666
Q ss_pred HHHHHHHhh
Q 043780 371 TALLSIEAE 379 (386)
Q Consensus 371 ~~~~~l~~~ 379 (386)
.+...++..
T Consensus 97 ~i~~il~~~ 105 (115)
T 4esb_A 97 TVNNLLQGE 105 (115)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHCCC
Confidence 665555443
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=22.60 E-value=2.8e+02 Score=22.06 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 043780 73 LKLAHFAVIVSRQYPEKQAAISYLEGVIEKLR 104 (386)
Q Consensus 73 l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~ 104 (386)
-+.++-++..|++.+|..-|+.||+.++.|..
T Consensus 45 P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~ 76 (109)
T 1v54_E 45 PKIIDAALRACRRLNDFASAVRILEVVKDKAG 76 (109)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 46778899999999999999999999999993
No 242
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=21.62 E-value=1.3e+02 Score=21.22 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=24.6
Q ss_pred HHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHH
Q 043780 286 LMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLM 321 (386)
Q Consensus 286 L~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvi 321 (386)
.++-+|.....-..-.-.+||..+++++..|.-|.-
T Consensus 17 ~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFq 52 (68)
T 1yz8_P 17 QLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 52 (68)
T ss_dssp HHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 344556543222334456899999999999999874
No 243
>2hng_A Hypothetical protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE; 1.63A {Streptococcus pneumoniae} SCOP: d.33.1.2
Probab=21.36 E-value=1.2e+02 Score=24.85 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=37.3
Q ss_pred ceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 043780 328 LIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSI 376 (386)
Q Consensus 328 LI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~~~~~~l 376 (386)
.|.|.|.|+.+.+-=-.=.|-.|+.++|+.|..=|-...+++.-=...+
T Consensus 68 viSG~IsQiv~i~dr~~~~~sd~~q~ev~~LsrPL~d~i~rLTYEVTeI 116 (127)
T 2hng_A 68 VISGTISQVNHIDGRIVNEPSELNQEEVETLARPCLNMLNRLTYEVTEI 116 (127)
T ss_dssp EEEEEEEEEEEEETCCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeeeeeeecccccCCcccCCHHHHHHHHHHHHHHHhhheeEEEEE
Confidence 5789998887666544456888999999999999988888776544443
No 244
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=21.24 E-value=73 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=26.9
Q ss_pred HHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHH
Q 043780 284 LCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLM 321 (386)
Q Consensus 284 LaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvi 321 (386)
+..++-.|.+..--..-..++||..++++..+|--|.=
T Consensus 16 l~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFq 53 (66)
T 3nau_A 16 IAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFS 53 (66)
T ss_dssp HHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcc
Confidence 34555567553333455678899999999999988864
No 245
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=21.13 E-value=1.6e+02 Score=23.56 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=42.1
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDS 364 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~ 364 (386)
+-+|.++||+.-+++...++.-+.+++..|- .+.+....+.+++.++.+.+.+.+..
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~----------~l~i~~~i~~~l~~~~~~~I~~~~~~ 87 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGT----------RINIDYFINEVMDEDHLEDIFEYFKE 87 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTC----------CCCCHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCC----------ccCHHHHcccccCHHHHHHHHHHHHH
Confidence 6799999999999999999999999988873 12233444456667766666655544
No 246
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=21.09 E-value=2.1e+02 Score=24.04 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=38.5
Q ss_pred cChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHH
Q 043780 300 IPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRD 360 (386)
Q Consensus 300 isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~ 360 (386)
..|.+||++++=|++-|=.++..-++. .|+|| ++.+.|. -.++..+++.+-+
T Consensus 47 ~Nf~dIa~~L~R~p~hv~ky~~~ELGt---~g~id--~~rlii~----G~~~~~~i~~~L~ 98 (148)
T 2d74_B 47 ENFKDIADALNRDPQHLLKFLLREIAT---AGTLE--GRRVVLQ----GRFTPYLIANKLK 98 (148)
T ss_dssp SCHHHHHHHHTCCSHHHHHHHHHHSCC---CEEEE--TTEEEES----SCCCHHHHHHHHH
T ss_pred EcHHHHHHHHCCCHHHHHHHHHHHhCC---ceeec--CCEEEEE----eeeCHHHHHHHHH
Confidence 479999999999999988888877554 68999 7777666 3445555544433
No 247
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=21.04 E-value=4e+02 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=25.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
..+||.+||+.+++|...|...+-+|..
T Consensus 126 eg~s~~EIA~~lgis~~tVks~l~rA~~ 153 (286)
T 3n0r_A 126 EGFTPTEAAQILDCDFGEVERLIGDAQA 153 (286)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 5799999999999999999999988754
No 248
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=20.94 E-value=3.6e+02 Score=22.29 Aligned_cols=92 Identities=8% Similarity=0.039 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHH------------HHHHHHHHhcccCChHHHHHHHHhccccccccCCCC
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILY------------IKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDID 153 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~------------~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~ 153 (386)
..+.++|++.+++..+.- +.+.++... +....+.++...|+++++...++++-..-+. +
T Consensus 17 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~ 87 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALN-----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN----N 87 (208)
T ss_dssp TTCHHHHHHHHHHHHHHC-----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C
T ss_pred CCCHHHHHHHHHHHHHhC-----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----C
Confidence 347888888877654332 111111111 1123688888999999999988876443111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCC
Q 043780 154 PSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 154 ~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~ 190 (386)
+ ..+ ...+..+...|++.+.-...-+.+..-|.
T Consensus 88 ~---~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 88 V---DCL-EACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp H---HHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred H---HHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 2 222 33345555678877766666665555443
No 249
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.93 E-value=95 Score=21.93 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=24.7
Q ss_pred HHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHH
Q 043780 285 CLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLM 321 (386)
Q Consensus 285 aL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvi 321 (386)
..++-+|.+...-..-.-.+||..+++++..|.-|.-
T Consensus 16 ~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFq 52 (64)
T 2e19_A 16 SLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFE 52 (64)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchh
Confidence 3455567542222223346889999999999999974
No 250
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=20.72 E-value=6.2e+02 Score=24.97 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhcCh-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhccc
Q 043780 55 LIQLYHNFITDFETKINL-----LKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQ 129 (386)
Q Consensus 55 ~~~ly~~fi~~f~~kin~-----l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~ 129 (386)
...+|+..+...+.-+.| +....-+..+.....+.++|+.+.++..+-....-.+.++ ........+|.++...
T Consensus 328 A~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~nLa~~~~~~ 406 (490)
T 3n71_A 328 VVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA-QLGMAVMRAGLTNWHA 406 (490)
T ss_dssp HHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHC
Confidence 456666666655544433 3334445555566678999999888754433211123332 2344456678888899
Q ss_pred CChHHHHHHHHhccccccccCC
Q 043780 130 GDRKECKKLLEDGKSTLDSMTD 151 (386)
Q Consensus 130 ~~l~~~~~~l~~~~~~l~~~~~ 151 (386)
|++++|..+++++-...+..-|
T Consensus 407 G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 407 GHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998877665543333
No 251
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=20.54 E-value=1.3e+02 Score=23.70 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=25.5
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhc
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSV 326 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~ 326 (386)
...+|+.+.++..+|+.++++.|+-..-..
T Consensus 48 ~g~lS~~EAa~ry~Is~~ei~~W~r~y~~~ 77 (101)
T 2oa4_A 48 YGLITLAEAKQTYGLSDEEFNSWVSALAEH 77 (101)
T ss_dssp HTTCCHHHHHHTTCSSHHHHHHHHHHHHCC
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999998665333
No 252
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=20.39 E-value=1.8e+02 Score=20.99 Aligned_cols=39 Identities=10% Similarity=0.021 Sum_probs=28.1
Q ss_pred HHHHHhhCCCCCCccChHHHHHHcC-----CChhHHHHHHHHHhhccc
Q 043780 286 LMEIIFSRPSEDRTIPLSIIAERTK-----LSIEDVEHLLMKSLSVHL 328 (386)
Q Consensus 286 L~~L~~~r~~~~r~isf~~Ia~~l~-----i~~~eVE~lvikAi~~gL 328 (386)
|+....+ .+.++|++|.+.+. ++.+++|.++-..-..|+
T Consensus 14 Li~~gK~----~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 14 LISLGKK----KGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp HHHHHHH----HSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhH----cCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 5555543 35899999999985 677888888766555554
No 253
>2o2a_A Hypothetical protein GBS1413; structural genomics, PSI-2, protei structure initiative; 2.10A {Streptococcus agalactiae} SCOP: d.33.1.2
Probab=20.31 E-value=1.3e+02 Score=24.78 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=37.2
Q ss_pred ceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 043780 328 LIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSI 376 (386)
Q Consensus 328 LI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~~~~~~l 376 (386)
.|.|.|.|+.+..-=-.=.|-.|+.++|+.|..=|-...+++.-=...+
T Consensus 67 viSG~IsQiv~i~~r~~~~~sd~~q~ev~~LsrPL~d~i~rLTYEVTeI 115 (128)
T 2o2a_A 67 VISGVISQMAHIQGRLINEPSEFSQDEVENLAAPLLEIVKRLTYEVTEI 115 (128)
T ss_dssp EEEEEEEEEEEEETCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeeeeeeecccccCCcccCCHHHHHHHHHHHHHHHhhheeEEEEE
Confidence 4789998887665534456888999999999999988888776544444
No 254
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=20.25 E-value=1.8e+02 Score=26.27 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=53.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWL 366 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~ 366 (386)
..++-.+|++.++++...+=.+|=+.-..|+|.=+-|..++.+..-+.++. +.+.+..+......+.
T Consensus 49 ~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~--G~~~~~~~~~~~~~~~ 115 (250)
T 1p4x_A 49 NTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEE--QREKIAERVTLFDQII 115 (250)
T ss_dssp SEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHH--HHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHH--HHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999998888777765 2444444444444443
No 255
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=20.25 E-value=3.1e+02 Score=22.44 Aligned_cols=71 Identities=7% Similarity=-0.043 Sum_probs=46.0
Q ss_pred CccChHHHHHHc--------CCChhHHHHHHHHHhhccceEEeecCC--CCEEEEEeeccccCChhhHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERT--------KLSIEDVEHLLMKSLSVHLIEGIIDQV--EGTVHVSWVQPRVLGIPQIKSLRDRLDSWLG 367 (386)
Q Consensus 298 r~isf~~Ia~~l--------~i~~~eVE~lvikAi~~gLI~G~IDqv--~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~ 367 (386)
+..++.+|++.+ +++...|=..+=+.-..|+|+.+-+.. +..-.+- .++..-.+.+...+..|..
T Consensus 53 ~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y-----~LT~~G~~~l~~~~~~~~~ 127 (145)
T 1xma_A 53 GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYY-----RITPEGIKYYKQKCEEWEL 127 (145)
T ss_dssp CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEE-----EECHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEE-----EECHHHHHHHHHHHHHHHH
Confidence 457888888887 588999999999999999999987641 2111111 2344445555555566654
Q ss_pred HHHHHH
Q 043780 368 KVHTAL 373 (386)
Q Consensus 368 ~v~~~~ 373 (386)
-...+.
T Consensus 128 ~~~~i~ 133 (145)
T 1xma_A 128 TKKVIN 133 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 256
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=20.19 E-value=1.2e+02 Score=19.61 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 043780 352 IPQIKSLRDRLDSWLGKVHTALL 374 (386)
Q Consensus 352 ~~q~~~L~~~L~~W~~~v~~~~~ 374 (386)
+++++.|.+||....++|..+..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~ 27 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQ 27 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999988764
No 257
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=20.13 E-value=81 Score=21.38 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=17.6
Q ss_pred ChHHHHHHcCCChhHHHHHHH
Q 043780 301 PLSIIAERTKLSIEDVEHLLM 321 (386)
Q Consensus 301 sf~~Ia~~l~i~~~eVE~lvi 321 (386)
.-.+||..+++++..|.-|.-
T Consensus 29 ~r~~La~~l~l~~~qV~~WFq 49 (58)
T 1ig7_A 29 ERAEFSSSLSLTETQVKIWFQ 49 (58)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHhhhhhh
Confidence 346889999999999998864
No 258
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=20.09 E-value=2.4e+02 Score=22.02 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcC-C-chHHHHHHHHHHHHhhhHHHHHHHHHHHHhch---------hhcCchhHHHHHHHHHHHH
Q 043780 3 ALQYLESLRNDH-P-ELGEWYNALADLYQKKLWHQLTLKLEQFVAHA---------VFQAGDALIQLYHNFITDF 66 (386)
Q Consensus 3 ~~~~L~~~~~~~-p-~~~~~~~~~~~l~~~KLWhqLt~~l~~~~~~~---------~~~~~~~~~~ly~~fi~~f 66 (386)
+.+|+..+++.- | |++++-.-+.+|-.--=-+.+|.+|.+++-+. .|.+ +..+.-|+.|+...
T Consensus 18 lqdYM~~L~~~L~~~ElqqFA~Llr~YR~G~~I~~Fc~kLl~LyG~~Rk~LL~gmRpFIp-~~Di~~FesFle~i 91 (98)
T 4fqn_A 18 LQDYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLRPFIP-EKDSQHFENFLETI 91 (98)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCGGGGGGGGGGGGGSC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhchHHHHHHhhccCCCC-hhhHHHHHHHHHHc
Confidence 568888888875 4 66666666666666555778888888887665 2332 44677788887653
Done!