Query 043780
Match_columns 386
No_of_seqs 209 out of 664
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 14:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043780.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043780hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ufma_ a.4.5.47 (A:) COP9 sig 98.3 4.6E-07 3.3E-11 69.4 6.7 50 297-346 28-77 (84)
2 d2cfxa1 a.4.5.32 (A:1-63) Tran 92.5 0.15 1.1E-05 35.3 6.3 35 297-331 17-51 (63)
3 d2cg4a1 a.4.5.32 (A:4-66) Regu 91.8 0.16 1.2E-05 35.2 5.7 36 297-332 17-52 (63)
4 d1i1ga1 a.4.5.32 (A:2-61) LprA 90.8 0.17 1.2E-05 34.8 4.9 36 297-332 15-50 (60)
5 d2cyya1 a.4.5.32 (A:5-64) Puta 90.6 0.19 1.4E-05 34.4 5.1 36 297-332 15-50 (60)
6 d1qqea_ a.118.8.1 (A:) Vesicul 89.7 5.5 0.0004 34.1 20.8 201 54-261 55-264 (290)
7 d1wi9a_ a.4.5.47 (A:) Hypothet 89.2 0.54 3.9E-05 33.4 6.5 51 297-347 19-69 (72)
8 d1ub9a_ a.4.5.28 (A:) Hypothet 87.2 1.9 0.00014 31.7 9.2 50 298-347 29-78 (100)
9 d1sfxa_ a.4.5.50 (A:) Hypothet 87.1 2.5 0.00018 31.7 10.0 68 298-368 33-100 (109)
10 d1ku9a_ a.4.5.36 (A:) DNA-bind 82.3 1.7 0.00012 34.1 7.2 60 281-346 29-88 (151)
11 d1mkma1 a.4.5.33 (A:1-75) Tran 81.2 1.9 0.00014 30.3 6.4 54 283-342 7-60 (75)
12 d1qqea_ a.118.8.1 (A:) Vesicul 79.2 17 0.0012 30.7 19.7 130 53-186 94-227 (290)
13 d1lvaa3 a.4.5.35 (A:511-574) C 77.5 4.3 0.00032 27.6 7.1 35 296-330 20-54 (64)
14 d1lj9a_ a.4.5.28 (A:) Transcri 75.3 15 0.0011 28.2 11.0 49 299-347 43-91 (144)
15 d2fbha1 a.4.5.28 (A:8-144) Tra 73.3 14 0.001 27.9 10.2 50 299-348 43-92 (137)
16 d3deua1 a.4.5.28 (A:2-141) Tra 72.6 11 0.00077 28.8 9.3 67 298-366 45-111 (140)
17 d1rp3a1 a.4.13.1 (A:87-163) Si 72.5 2.6 0.00019 29.6 4.9 27 297-323 24-50 (77)
18 d1z05a1 a.4.5.63 (A:10-80) Tra 70.0 5.1 0.00037 27.4 6.0 34 297-330 18-51 (71)
19 d1rp3a2 a.4.13.2 (A:164-234) S 68.2 4.1 0.0003 27.6 5.1 28 298-325 36-63 (71)
20 d1l0oc_ a.4.13.2 (C:) SigmaF { 63.0 3.4 0.00025 27.5 3.6 24 297-320 29-52 (57)
21 d1ylfa1 a.4.5.55 (A:5-142) Hyp 61.1 7.5 0.00055 30.0 6.1 65 284-354 11-75 (138)
22 d1biaa1 a.4.5.1 (A:1-63) Bioti 60.6 12 0.00086 25.1 6.3 42 280-328 7-48 (63)
23 d1or7a1 a.4.13.2 (A:120-187) S 60.2 7.1 0.00052 26.3 5.1 27 298-324 33-59 (68)
24 d1hz4a_ a.118.8.2 (A:) Transcr 59.9 22 0.0016 29.2 9.5 97 82-184 21-117 (366)
25 d2etha1 a.4.5.28 (A:1-140) Put 59.5 23 0.0017 26.7 8.9 66 298-365 45-110 (140)
26 d1hh8a_ a.118.8.1 (A:) Neutrop 59.4 22 0.0016 28.3 9.1 84 86-189 18-101 (192)
27 d2a61a1 a.4.5.28 (A:5-143) Tra 58.8 28 0.002 26.2 9.2 51 298-348 43-93 (139)
28 d2hr3a1 a.4.5.28 (A:2-146) Pro 58.5 26 0.0019 26.5 9.1 66 298-365 48-113 (145)
29 d3broa1 a.4.5.28 (A:3-137) Tra 57.4 27 0.002 26.0 8.9 70 297-368 43-112 (135)
30 d1hz4a_ a.118.8.2 (A:) Transcr 56.7 27 0.0019 28.5 9.5 89 86-181 226-314 (366)
31 d1tjca_ a.118.8.1 (A:) Prolyl 55.8 13 0.00094 26.2 6.2 69 121-190 10-78 (95)
32 d1fsea_ a.4.6.2 (A:) Germinati 55.6 5.2 0.00038 27.1 3.7 24 298-321 18-41 (67)
33 d2c2la1 a.118.8.1 (A:24-224) S 53.4 41 0.003 25.6 9.7 84 86-186 17-100 (201)
34 d1xd7a_ a.4.5.55 (A:) Hypothet 52.4 10 0.00073 28.8 5.3 54 298-354 17-70 (127)
35 d1ku3a_ a.4.13.2 (A:) Sigma70 52.3 7.8 0.00057 26.1 4.0 39 286-325 16-54 (61)
36 d1s3ja_ a.4.5.28 (A:) Putative 51.6 36 0.0026 25.6 8.8 51 298-348 48-98 (143)
37 d1tw3a1 a.4.5.29 (A:14-98) Car 51.4 8.5 0.00062 27.4 4.4 35 297-331 32-66 (85)
38 d1z6ra1 a.4.5.63 (A:12-81) Mlc 47.9 25 0.0018 23.6 6.4 47 280-330 4-50 (70)
39 d1hxia_ a.118.8.1 (A:) Peroxin 47.7 43 0.0031 23.8 9.7 84 85-185 28-111 (112)
40 d1r1ta_ a.4.5.5 (A:) SmtB repr 47.0 25 0.0019 25.4 6.7 38 298-335 35-72 (98)
41 d1ldja3 e.40.1.1 (A:411-686) C 46.3 9.8 0.00072 32.9 4.8 39 289-330 202-240 (276)
42 d1xsva_ a.4.13.3 (A:) Hypothet 44.8 16 0.0011 27.3 5.2 28 297-324 32-59 (106)
43 d1zara1 a.4.5.56 (A:2-90) Rio2 44.4 21 0.0016 25.8 5.7 53 280-335 13-65 (89)
44 d2p7vb1 a.4.13.2 (B:546-613) S 43.5 13 0.00097 25.4 4.2 29 297-325 23-51 (68)
45 d1s7oa_ a.4.13.3 (A:) Hypothet 43.5 9.2 0.00067 28.7 3.6 27 298-324 31-57 (106)
46 d2d1ha1 a.4.5.50 (A:1-109) Hyp 43.4 52 0.0038 23.5 10.5 69 297-370 34-105 (109)
47 d3ctaa1 a.4.5.28 (A:5-89) Ta10 43.4 15 0.0011 25.9 4.7 40 296-335 18-57 (85)
48 d2bgca1 a.4.5.4 (A:138-237) Li 42.3 33 0.0024 25.0 6.6 57 299-366 31-88 (100)
49 d1jhfa1 a.4.5.2 (A:2-72) LexA 41.9 34 0.0025 23.1 6.3 45 297-342 22-67 (71)
50 d1neea1 d.241.1.1 (A:1-98) Tra 41.8 19 0.0014 26.4 5.2 52 300-360 42-93 (98)
51 d1z91a1 a.4.5.28 (A:8-144) Org 41.1 24 0.0017 26.6 6.0 50 298-347 46-95 (137)
52 d1p4xa2 a.4.5.28 (A:126-250) S 40.9 27 0.002 26.2 6.2 51 297-347 47-97 (125)
53 d1dpua_ a.4.5.16 (A:) C-termin 40.8 34 0.0025 23.4 6.0 51 282-336 10-61 (69)
54 d1lnwa_ a.4.5.28 (A:) MexR rep 40.3 67 0.0049 23.9 9.4 70 298-369 49-118 (141)
55 d1p4xa1 a.4.5.28 (A:1-125) Sta 39.9 63 0.0046 23.8 8.3 51 297-347 48-98 (125)
56 d1ccda_ a.101.1.1 (A:) Clara c 38.5 53 0.0038 22.9 6.8 54 237-294 7-69 (77)
57 d1r1ua_ a.4.5.5 (A:) Metal-sen 38.0 40 0.0029 24.0 6.5 38 298-335 30-67 (94)
58 d2fbia1 a.4.5.28 (A:5-140) Pro 37.8 71 0.0052 23.5 9.1 51 298-348 43-93 (136)
59 d2frha1 a.4.5.28 (A:102-216) P 37.5 47 0.0034 24.2 7.1 67 297-365 47-113 (115)
60 d2fbka1 a.4.5.28 (A:8-179) Tra 37.1 25 0.0018 27.8 5.7 51 297-347 77-127 (172)
61 d1uhsa_ a.4.1.1 (A:) Homeodoma 36.7 15 0.0011 25.4 3.6 39 284-322 13-52 (72)
62 d1hlva1 a.4.1.7 (A:1-66) DNA-b 35.2 37 0.0027 23.0 5.4 37 277-320 10-46 (66)
63 d1ulya_ a.4.5.58 (A:) Hypothet 35.0 30 0.0022 27.5 6.0 37 297-333 30-66 (190)
64 d1qzza1 a.4.5.29 (A:10-101) Ac 33.5 24 0.0018 25.3 4.5 35 298-332 39-73 (92)
65 d2p4wa1 a.4.5.64 (A:1-194) Tra 32.9 35 0.0026 27.4 6.1 50 279-336 16-65 (194)
66 d2fxaa1 a.4.5.28 (A:6-167) Pro 32.7 27 0.002 27.5 5.1 51 298-348 54-104 (162)
67 d2oa4a1 a.4.12.3 (A:1-93) Unch 32.3 31 0.0022 25.1 4.8 43 277-327 36-78 (93)
68 d2f2ea1 a.4.5.69 (A:5-146) Hyp 32.3 95 0.0069 23.8 8.4 80 279-368 19-98 (142)
69 d1hsja1 a.4.5.28 (A:373-487) S 32.2 35 0.0025 25.0 5.4 67 297-365 46-112 (115)
70 d1k8ba_ d.241.1.1 (A:) Transla 32.1 35 0.0026 21.9 4.6 39 300-343 12-50 (52)
71 d1elwa_ a.118.8.1 (A:) Hop {Hu 31.6 81 0.0059 22.3 9.3 89 86-191 16-104 (117)
72 d2ev0a1 a.4.5.24 (A:2-62) Mang 31.5 45 0.0033 21.9 5.3 33 298-330 20-52 (61)
73 d2hoea1 a.4.5.63 (A:10-71) N-a 31.0 27 0.002 23.0 4.1 33 299-331 12-44 (62)
74 d1utga_ a.101.1.1 (A:) Uterogl 30.7 69 0.005 21.9 6.2 49 238-290 6-63 (70)
75 d1ttya_ a.4.13.2 (A:) Sigma70 30.7 26 0.0019 25.1 4.2 30 296-325 35-64 (87)
76 d1u2wa1 a.4.5.5 (A:12-119) Cad 30.6 91 0.0066 22.5 8.9 41 297-337 43-83 (108)
77 d2bv6a1 a.4.5.28 (A:5-140) Tra 30.4 49 0.0035 24.6 6.2 49 298-346 47-95 (136)
78 d2isya1 a.4.5.24 (A:2-64) Iron 30.2 65 0.0048 21.2 6.0 34 297-330 21-54 (63)
79 d1jgsa_ a.4.5.28 (A:) Multiple 29.7 63 0.0046 24.0 6.8 51 298-348 47-97 (138)
80 d1fc3a_ a.4.6.3 (A:) Spo0A {Ba 28.7 5.6 0.00041 30.7 -0.0 62 301-362 50-113 (119)
81 d1le8a_ a.4.1.1 (A:) Mating ty 27.8 24 0.0017 22.6 3.2 37 286-322 11-47 (53)
82 d1l3la1 a.4.6.2 (A:170-234) Qu 27.7 26 0.0019 23.1 3.6 26 298-323 18-43 (65)
83 d1p5qa1 a.118.8.1 (A:258-427) 27.1 1.2E+02 0.0088 22.8 10.2 61 121-189 67-127 (170)
84 d1hxia_ a.118.8.1 (A:) Peroxin 26.9 56 0.004 23.1 5.7 76 55-142 35-110 (112)
85 d1yz8p1 a.4.1.1 (P:1-60) Pitui 26.9 46 0.0033 21.6 4.7 36 286-321 15-50 (60)
86 d1a17a_ a.118.8.1 (A:) Protein 26.9 1.1E+02 0.0082 22.4 9.2 87 86-189 23-109 (159)
87 d1tjca_ a.118.8.1 (A:) Prolyl 26.6 90 0.0065 21.2 7.1 61 82-144 14-74 (95)
88 d1fcha_ a.118.8.1 (A:) Peroxin 26.2 1.5E+02 0.011 23.8 16.0 21 122-142 212-232 (323)
89 d1a04a1 a.4.6.2 (A:150-216) Ni 25.8 30 0.0022 23.0 3.6 28 298-325 20-47 (67)
90 d1bgfa_ a.90.1.1 (A:) Transcri 24.8 91 0.0067 23.5 6.7 57 26-84 51-111 (124)
91 d1jgga_ a.4.1.1 (A:) Even-skip 24.5 26 0.0019 22.8 2.9 36 286-321 13-48 (57)
92 d2e1oa1 a.4.1.1 (A:8-64) Homeo 24.4 27 0.002 22.7 3.0 36 286-321 14-49 (57)
93 d1kt1a1 a.118.8.1 (A:254-421) 24.2 1.3E+02 0.0098 22.4 14.7 89 82-183 73-161 (168)
94 d1bl0a1 a.4.1.8 (A:9-62) MarA 23.9 77 0.0056 19.5 5.8 42 283-326 5-46 (54)
95 d1fnna1 a.4.5.11 (A:277-388) C 23.8 77 0.0056 23.2 6.0 58 278-337 12-79 (112)
96 d1x2ma1 a.4.1.1 (A:8-59) Lag1 23.5 38 0.0028 21.5 3.6 37 285-321 6-43 (52)
97 d1s7ea1 a.4.1.1 (A:103-152) He 22.8 26 0.0019 22.0 2.6 36 286-321 12-47 (50)
98 d2ecca1 a.4.1.1 (A:1-76) Homeo 22.8 38 0.0028 23.2 3.7 38 286-323 17-54 (76)
99 d2cuea1 a.4.1.1 (A:7-74) Paire 22.0 42 0.0031 22.5 3.8 38 285-322 14-51 (68)
100 d1au7a1 a.4.1.1 (A:103-160) Pi 21.8 31 0.0023 22.4 2.9 25 298-322 25-49 (58)
101 d1e3oc1 a.4.1.1 (C:104-160) Oc 21.4 32 0.0024 22.3 2.9 25 298-322 24-48 (57)
102 d1bw5a_ a.4.1.1 (A:) Insulin g 20.8 41 0.003 22.5 3.4 37 286-322 17-53 (66)
103 d2ejna1 a.101.1.1 (A:1-72) All 20.2 70 0.0051 21.8 4.4 36 238-277 6-41 (72)
104 d2ecba1 a.4.1.1 (A:8-83) Zinc 20.2 38 0.0027 23.2 3.2 38 285-322 17-54 (76)
No 1
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.32 E-value=4.6e-07 Score=69.40 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=46.9
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
...|+++.+|+.+++|.++||.+|.+.|..|-|.|+|||++++|+++.-.
T Consensus 28 Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~e 77 (84)
T d1ufma_ 28 YNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETRE 77 (84)
T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSS
T ss_pred hceeeHHHHHHHHCCCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCCC
Confidence 67899999999999999999999999999999999999999999987543
No 2
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=92.47 E-value=0.15 Score=35.33 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=33.2
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEE
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG 331 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G 331 (386)
+..+|+.+||+.+++|...|..-+-+....|+|+|
T Consensus 17 n~r~s~~~iA~~lgis~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 17 DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 56789999999999999999999999999999998
No 3
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=91.78 E-value=0.16 Score=35.15 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=33.6
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+..+|+.+||+.+++|...|-.-+=+....|+|+|.
T Consensus 17 ~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~~ 52 (63)
T d2cg4a1 17 NARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 52 (63)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeE
Confidence 568899999999999999999999999999999974
No 4
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=90.81 E-value=0.17 Score=34.78 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=33.1
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+..+||.+||+.+++|...|-.-+=+....|+|+|.
T Consensus 15 n~r~s~~~lA~~~gls~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d1i1ga1 15 DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 50 (60)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeE
Confidence 568999999999999999999999999999999863
No 5
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=90.64 E-value=0.19 Score=34.36 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+..+||.+||+.+++|...|..-+=+....|+|+|.
T Consensus 15 n~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d2cyya1 15 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 50 (60)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeE
Confidence 467899999999999999999999999999999863
No 6
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=89.71 E-value=5.5 Score=34.11 Aligned_cols=201 Identities=11% Similarity=0.056 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHH---HHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhc-cc
Q 043780 54 ALIQLYHNFITDFETKINLLKLAHFA---VIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKL-EQ 129 (386)
Q Consensus 54 ~~~~ly~~fi~~f~~kin~l~l~~i~---~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l-~~ 129 (386)
.-++.|..-+.-....-|+-..+... ..+..+..++++|++..++..+-.... ........+...++.++. ..
T Consensus 55 ~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 131 (290)
T d1qqea_ 55 LAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR---GQFRRGANFKFELGEILENDL 131 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc---ccchhHHHHHHHHHHhHhhHH
Confidence 34666666665555555555444443 344456779999999998876655311 111222333344455553 56
Q ss_pred CChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 043780 130 GDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVESLSDSFKLDLAFDLSLSA 209 (386)
Q Consensus 130 ~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~~~~~~~e~~~~a~~l~i~A 209 (386)
|+++++......+-...+. .+- +......|.-.+.++...|+|.+.....-+.+...+................++..
T Consensus 132 ~~~~~A~~~~~~A~~l~~~-~~~-~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (290)
T d1qqea_ 132 HDYAKAIDCYELAGEWYAQ-DQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (290)
T ss_dssp CCHHHHHHHHHHHHHHHHH-TTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-cCc-hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHH
Confidence 9999999888877554332 222 44445556666777878888887666555544444333222222223223333333
Q ss_pred hcCCCcc----cccccccC-hhhhcccCCCcHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043780 210 LLGDNIY----NFGELLAH-PIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHN 261 (386)
Q Consensus 210 L~~~~iy----~FgeLl~~-p~v~~L~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~ 261 (386)
+...+.= .|...... |.+. ...++.-+.+|+.++..||.+.|.+-+..+.
T Consensus 210 l~~~d~~~A~~~~~~~~~~~~~~~--~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 210 LAATDAVAAARTLQEGQSEDPNFA--DSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHhCCCcc--chHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3222111 01111111 1111 1123456788999999999999988776554
No 7
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=89.16 E-value=0.54 Score=33.38 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=46.7
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
.+.+..+++|.++++.-.++=.-|-.....|.|.|-||.-.+.++||-.-|
T Consensus 19 ~Kvv~LedLAa~F~lktqd~i~RIq~Le~~g~ltGViDDRGKfIyIS~s~~ 69 (72)
T d1wi9a_ 19 SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGP 69 (72)
T ss_dssp CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSSC
T ss_pred CCEeeHHHHHHHcCCcHHHHHHHHHHHHHCCCeeeEEcCCCCEEEEcCCCC
Confidence 589999999999999988888888888999999999999999999986665
No 8
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=87.19 E-value=1.9 Score=31.70 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=42.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..+++.+|++.++++..-|=..+=+....|+|+.+-++.++...+-..+|
T Consensus 29 ~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~ 78 (100)
T d1ub9a_ 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITD 78 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECH
T ss_pred CCeeHHHHHHHHhhccccccHHHHHHhhhceeEEEEcCcCCccccccCCH
Confidence 57999999999999999999888889999999999888877655554444
No 9
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=87.12 E-value=2.5 Score=31.73 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=51.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGK 368 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~ 368 (386)
+.+|=.+||+.++++...|-..+=+....|+|+-..++.++..++....+- .+=++.++.++..|.+.
T Consensus 33 g~~t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~~~~~~~r~~~~~a~~~---~e~l~~~~~~~~~~l~e 100 (109)
T d1sfxa_ 33 GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKP---EKVLKEFKSSILGEIER 100 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCH---HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCcchHHHHHHHHHhCCCEEEEeccCCCccccccCCCH---HHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999988888776655441 12244455444444433
No 10
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=82.34 E-value=1.7 Score=34.10 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 281 INILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 281 irlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
.++++++-+ ..+.+|..+|++.++++..-|=..|=+....|+|.=.-+..++.-......
T Consensus 29 ~~i~~~L~~------~~~plt~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~~~~~drr~~~~~~t 88 (151)
T d1ku9a_ 29 GAVYAILYL------SDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVD 88 (151)
T ss_dssp HHHHHHHHH------CSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECC
T ss_pred HHHHHHHHh------CCCCcCHHHHHHHhCCCcchHHHHHHHHHHCCCEEEEEcCCCCceeEEeCC
Confidence 456666654 135699999999999999999999999999999998777766654444433
No 11
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=81.23 E-value=1.9 Score=30.26 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=41.3
Q ss_pred HHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEE
Q 043780 283 ILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHV 342 (386)
Q Consensus 283 lLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~v 342 (386)
-+.+++.... ..+.++..+||+.+++|...+-.++-.....|++.= |. ++...+
T Consensus 7 ~l~IL~~~a~---~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~--~~-~g~y~l 60 (75)
T d1mkma1 7 AFEILDFIVK---NPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLR--KK-DKRYVP 60 (75)
T ss_dssp HHHHHHHHHH---CSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--CT-TSCEEE
T ss_pred HHHHHHHHHh---CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--CC-CCCEee
Confidence 3445554433 247899999999999999999999999999999984 33 454444
No 12
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=79.20 E-value=17 Score=30.69 Aligned_cols=130 Identities=11% Similarity=-0.050 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHHhhcChHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcc
Q 043780 53 DALIQLYHNFITDFETKINLLKLAHFAVIVSR----QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLE 128 (386)
Q Consensus 53 ~~~~~ly~~fi~~f~~kin~l~l~~i~~~v~~----~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~ 128 (386)
+.-++.|+.-+.-+...=++.........+.. +..++++|++++++..+-... .........+...++.++..
T Consensus 94 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~---~~~~~~~~~~~~~la~~~~~ 170 (290)
T d1qqea_ 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKCADLKAL 170 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh---cCchhhhhhHHHHHHHHHHH
Confidence 45688889888877777777777777777653 357899999999887665421 11111223445567889999
Q ss_pred cCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 043780 129 QGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 186 (386)
Q Consensus 129 ~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~ 186 (386)
.|+++++.+..+++-............+...++. ....+-..+++...-...-+++.
T Consensus 171 ~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK-KGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH-HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH-HHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999988765433333332333333333 33344456776654444444443
No 13
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=77.52 E-value=4.3 Score=27.61 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=31.1
Q ss_pred CCCccChHHHHHHcCCChhHHHHHHHHHhhccceE
Q 043780 296 EDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIE 330 (386)
Q Consensus 296 ~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~ 330 (386)
+...-+..+|++.+++++.+++.++=.+.+.|.+-
T Consensus 20 g~~PP~vrdl~~~l~~~e~~~~~lL~~l~~~G~lv 54 (64)
T d1lvaa3 20 RWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLV 54 (64)
T ss_dssp TTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 34678899999999999999999999999998764
No 14
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=75.32 E-value=15 Score=28.20 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=43.3
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
.++..+|++.++++..-|=..|=+....|+|.-+-|..++....-..+|
T Consensus 43 ~~t~~~la~~l~i~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~ 91 (144)
T d1lj9a_ 43 GIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATE 91 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECH
T ss_pred CCCHHHHHHHHCccHhhHHHHHHHHHhhhcccccCCCCCCCccccccCH
Confidence 5899999999999999999999999999999999999988665555654
No 15
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=73.29 E-value=14 Score=27.91 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=44.8
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR 348 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R 348 (386)
.++-.+|++.++++..-|-..|=+....|+|.=..|..++....-.++|.
T Consensus 43 ~~t~~~la~~~~~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~ 92 (137)
T d2fbha1 43 SPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPK 92 (137)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTT
T ss_pred CCcHHHHHHHHCCCHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHH
Confidence 58999999999999999999999999999999999999987766666654
No 16
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=72.60 E-value=11 Score=28.79 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=44.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWL 366 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~ 366 (386)
..++-.+|++.++++...|-..|=+....|+|.-.-|..++....-..++.- .+-.+.+......|.
T Consensus 45 ~~~t~~~la~~l~i~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G--~~~~~~~~~~~~~~~ 111 (140)
T d3deua1 45 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKA--EPLIAEMEEVIHKTR 111 (140)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGG--HHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHH--HHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999977766666542 333444444443333
No 17
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=72.52 E-value=2.6 Score=29.62 Aligned_cols=27 Identities=22% Similarity=0.134 Sum_probs=24.4
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHH
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKS 323 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikA 323 (386)
.|.-+-++||+++++++++|..++..+
T Consensus 24 GR~Pt~~EiA~~lg~s~~e~~~~l~~~ 50 (77)
T d1rp3a1 24 GREPTDEEVAKELGISTEELFKTLDKI 50 (77)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 689999999999999999999987654
No 18
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=69.99 E-value=5.1 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=32.0
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceE
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIE 330 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~ 330 (386)
+..+|-.+||+.++++..-|-..|=+.+..|+|.
T Consensus 18 ~g~~sr~eLa~~~glS~~Tv~~~l~~L~~~Glv~ 51 (71)
T d1z05a1 18 KGPISRIDLSKESELAPASITKITRELIDAHLIH 51 (71)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3579999999999999999999999999999996
No 19
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=68.16 E-value=4.1 Score=27.62 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=25.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
..+||++||+.+|+|..-|...+-+|+.
T Consensus 36 ~~~s~~eIA~~lgis~~tv~~~~~ra~~ 63 (71)
T d1rp3a2 36 EELPAKEVAKILETSVSRVSQLKAKALE 63 (71)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999888854
No 20
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=62.98 E-value=3.4 Score=27.50 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCccChHHHHHHcCCChhHHHHHH
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLL 320 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lv 320 (386)
+|.-|.++||+++++|+++|...+
T Consensus 29 gRePT~~EiA~~l~~~~e~V~~~l 52 (57)
T d1l0oc_ 29 GRAPTVTEIADHLGISPEDVVLAQ 52 (57)
T ss_dssp TSCCBHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHH
Confidence 689999999999999999996544
No 21
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=61.08 E-value=7.5 Score=30.03 Aligned_cols=65 Identities=8% Similarity=-0.015 Sum_probs=44.8
Q ss_pred HHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhh
Q 043780 284 LCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQ 354 (386)
Q Consensus 284 LaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q 354 (386)
-+|+.|+.. | ++.+|=++||+.+++|..-++.++-+.-..|+|+.+=- ..|. ... ..|..++..+
T Consensus 11 ~~L~~la~~-~--~~~vss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG-~GG~-~L~-~~p~~ItL~d 75 (138)
T d1ylfa1 11 HILSILKNN-P--SSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGA-GLL-KDLHEITLLD 75 (138)
T ss_dssp HHHHHHHHS-C--GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCE-EES-SCGGGCBHHH
T ss_pred HHHHHHHhC-C--CCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecC-CCCc-eec-CCHhhcCHHH
Confidence 345555654 2 46789999999999999999999999999999988644 3333 333 2444444433
No 22
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=60.63 E-value=12 Score=25.05 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccc
Q 043780 280 KINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHL 328 (386)
Q Consensus 280 KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gL 328 (386)
.+++|.+++ +++.+|-++||+.++++..-|-.-|-+.=..|+
T Consensus 7 ~~~iL~~L~-------~~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~ 48 (63)
T d1biaa1 7 PLKLIALLA-------NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGV 48 (63)
T ss_dssp HHHHHHHHT-------TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-------HCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 456666663 357899999999999998877777666666776
No 23
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=60.23 E-value=7.1 Score=26.30 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=24.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
...||++||+.+|+|+.-|...+=+|.
T Consensus 33 ~~~s~~eIA~~lgis~~tv~~~l~ra~ 59 (68)
T d1or7a1 33 DGLSYEEIAAIMDCPVGTVRSRIFRAR 59 (68)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 579999999999999999999988875
No 24
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=59.91 E-value=22 Score=29.16 Aligned_cols=97 Identities=7% Similarity=-0.115 Sum_probs=56.4
Q ss_pred HHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHH
Q 043780 82 VSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYY 161 (386)
Q Consensus 82 v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y 161 (386)
+.-...++++|++++++..+... ..+....+.....++.++...|+++++...++++-..-.... +.......+
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~----~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~ 94 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--VWHYALWSL 94 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCc----CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--chHHHHHHH
Confidence 33445689999999988765441 111112234455678888999999999999887755433222 122223333
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHH
Q 043780 162 WVSSQYHKFHQEFAEFYKCALLY 184 (386)
Q Consensus 162 ~~~s~~~k~~~~~~~~y~~~l~y 184 (386)
...+..+...+++..........
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~a 117 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKA 117 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566665544443333
No 25
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=59.54 E-value=23 Score=26.70 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=51.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 365 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W 365 (386)
..++-.+||+.++++..-|=..|=+....|+|.-.-|..++....-..++.- .+-++.+......|
T Consensus 45 ~~~t~~~La~~l~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G--~~~~~~~~~~~~~~ 110 (140)
T d2etha1 45 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKG--KEIFGEILSNFESL 110 (140)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHH--HHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHH--HHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999877766666542 23344444444433
No 26
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.42 E-value=22 Score=28.31 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSS 165 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s 165 (386)
..|.++|++..++ + .++++.++. ..|.++...|++++|.+..+++=.. +|.--.+|+..+.
T Consensus 18 ~~d~~~Al~~~~~----i------~~~~~~~~~--nlG~~~~~~g~~~~A~~~~~kAl~l-------dp~~~~a~~~~g~ 78 (192)
T d1hh8a_ 18 KKDWKGALDAFSA----V------QDPHSRICF--NIGCMYTILKNMTEAEKAFTRSINR-------DKHLAVAYFQRGM 78 (192)
T ss_dssp TTCHHHHHHHHHT----S------SSCCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHh----c------CCCCHHHHH--HHHHHHHHcCCchhHHHHHHHHHHH-------hhhhhhhHHHHHH
Confidence 4588999887754 3 223455554 5688889999999999988876432 2333334544444
Q ss_pred HHHHHhhcHHHHHHHHHHHhccCC
Q 043780 166 QYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 166 ~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
. +...|+|.+.-...-+.+.+.+
T Consensus 79 ~-~~~~g~~~~A~~~~~kAl~~~~ 101 (192)
T d1hh8a_ 79 L-YYQTEKYDLAIKDLKEALIQLR 101 (192)
T ss_dssp H-HHHTTCHHHHHHHHHHHHHTTT
T ss_pred H-HHhhccHHHHHHHHHHHHHhCc
Confidence 4 4457888766555444444443
No 27
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=58.81 E-value=28 Score=26.19 Aligned_cols=51 Identities=6% Similarity=-0.039 Sum_probs=44.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR 348 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R 348 (386)
..++-++||+.++++...|=..+=+....|+|.=.-+..++....-.+++.
T Consensus 43 ~~~t~~~la~~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~ 93 (139)
T d2a61a1 43 GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRK 93 (139)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH
T ss_pred CCCCHHHHHHHhCCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHH
Confidence 357999999999999999999999999999999998888877777666654
No 28
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=58.52 E-value=26 Score=26.55 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=46.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 365 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W 365 (386)
+.+|-.+|++.++++..-|-..|=+....|+|.=+-|..++...+-+++++- .+-...+......|
T Consensus 48 g~~t~~~La~~~~~~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G--~~~~~~~~~~~~~~ 113 (145)
T d2hr3a1 48 GDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEG--RRNLYGNRAKREEW 113 (145)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHH--HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHH--HHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999888887777777653 22233444444444
No 29
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=57.43 E-value=27 Score=26.00 Aligned_cols=70 Identities=7% Similarity=0.005 Sum_probs=53.1
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHH
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGK 368 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~ 368 (386)
.+.+|-.+|++.++++...|-..|=+....|+|.-.-|..++....-..+|. +.+-.+.+......|...
T Consensus 43 ~~~it~~ela~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~--G~~~~~~~~~~~~~~~~~ 112 (135)
T d3broa1 43 NKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKK--ANKLETIILSYMDSDQSQ 112 (135)
T ss_dssp TSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHH--HHTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHH--HHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999988999999999999999886665556553 333444455544444433
No 30
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=56.74 E-value=27 Score=28.53 Aligned_cols=89 Identities=15% Similarity=0.054 Sum_probs=52.8
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSS 165 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s 165 (386)
..+++++.+.+++.... .+.+...........+..++..|+++++...++++-...... +. .......|...+
T Consensus 226 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~la 298 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKP-----EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RL-MSDLNRNLLLLN 298 (366)
T ss_dssp TTCHHHHHHHHHHSCCC-----CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TC-HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh-----ccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc-cc-ChHHHHHHHHHH
Confidence 34566666665542111 123334455556677888999999999999888775443322 22 344455555666
Q ss_pred HHHHHhhcHHHHHHHH
Q 043780 166 QYHKFHQEFAEFYKCA 181 (386)
Q Consensus 166 ~~~k~~~~~~~~y~~~ 181 (386)
..|...|++.+.....
T Consensus 299 ~~~~~~g~~~~A~~~l 314 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVL 314 (366)
T ss_dssp HHHHHHTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 6666778777544433
No 31
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.76 E-value=13 Score=26.19 Aligned_cols=69 Identities=9% Similarity=-0.011 Sum_probs=41.4
Q ss_pred HHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCC
Q 043780 121 QIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSV 190 (386)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~~ 190 (386)
.+|......|++++|..|++++-...+.........-..++.+ +..+...|+|.+.....-+.|..-|.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~L-g~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYL-SYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHH-hhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 5688888999999999999987554332222111222333334 44455677887755555555554443
No 32
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=55.61 E-value=5.2 Score=27.11 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.7
Q ss_pred CccChHHHHHHcCCChhHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLM 321 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvi 321 (386)
+-.|..+||+.+++++..|+..+-
T Consensus 18 ~G~s~~eIA~~L~is~~TV~~~~~ 41 (67)
T d1fsea_ 18 QDKTTKEIASELFISEKTVRNHIS 41 (67)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCCHHHHHHHHH
Confidence 468999999999999998875443
No 33
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.44 E-value=41 Score=25.60 Aligned_cols=84 Identities=10% Similarity=0.020 Sum_probs=54.4
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSS 165 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s 165 (386)
-++.++|+++.++..+.- ...+.++.. .|.+++..|+++.|....+.+-.. +|.-..+||.. +
T Consensus 17 ~g~~~~Ai~~~~kal~~~-------p~~~~~~~~--lg~~y~~~~~~~~Ai~~~~~al~l-------~p~~~~a~~~l-g 79 (201)
T d2c2la1 17 GRKYPEAAACYGRAITRN-------PLVAVYYTN--RALCYLKMQQPEQALADCRRALEL-------DGQSVKAHFFL-G 79 (201)
T ss_dssp TTCHHHHHHHHHHHHHHC-------SCCHHHHHH--HHHHHHHTTCHHHHHHHHHHHTTS-------CTTCHHHHHHH-H
T ss_pred cCCHHHHHHHHHHHHHhC-------CCCHHHHHh--HHHHHhhhhhhhhhhHHHHHHHHh-------CCCcHHHHHHH-H
Confidence 457999999988765432 345666654 567788889999999888876432 22223344444 4
Q ss_pred HHHHHhhcHHHHHHHHHHHhc
Q 043780 166 QYHKFHQEFAEFYKCALLYLA 186 (386)
Q Consensus 166 ~~~k~~~~~~~~y~~~l~yL~ 186 (386)
..|...|+|.+.....-+.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 445567888876655555554
No 34
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=52.43 E-value=10 Score=28.83 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=41.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQ 354 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q 354 (386)
..+|=++||+.+++|+.-|+.++-+.-..|+|++.=-. +|- +... .|..++..+
T Consensus 17 ~~~ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~rG~-~GG-yLar-~p~~Itl~d 70 (127)
T d1xd7a_ 17 EKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGV-PGA-SLKK-DPADISLLE 70 (127)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSS-SSC-EESS-CGGGCBHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHhCcccccCCC-CCc-cccC-CHHhCcHHH
Confidence 45899999999999999999999999999999976554 444 4443 455555444
No 35
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=52.26 E-value=7.8 Score=26.07 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 286 LMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 286 L~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
++.+-|.- .+....|+.+|++.++|+.+-|-.+.-+|+.
T Consensus 16 Ii~~ryGl-~~~~~~tl~eIa~~lgiS~erVrqi~~~al~ 54 (61)
T d1ku3a_ 16 VLKMRKGL-IDGREHTLEEVGAYFGVTRERIRQIENKALR 54 (61)
T ss_dssp HHHHHHTT-TTSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455521 1357899999999999999988888888764
No 36
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=51.56 E-value=36 Score=25.59 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=43.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR 348 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R 348 (386)
+.++-.+||+.++++...|=..|=+....|+|.=.-|..++....-..++.
T Consensus 48 ~~~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~ 98 (143)
T d1s3ja_ 48 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDE 98 (143)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHH
Confidence 458999999999999999999999999999999999988887655555543
No 37
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=51.37 E-value=8.5 Score=27.37 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.4
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEE
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG 331 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G 331 (386)
.+.+|.+++|+.++++++-++.++--+.+.|+++=
T Consensus 32 ~gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e 66 (85)
T d1tw3a1 32 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEE 66 (85)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCHHHHHHHhCcChhHHHHHHHHHHHCCCeEe
Confidence 35789999999999999999999999999999963
No 38
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=47.94 E-value=25 Score=23.63 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceE
Q 043780 280 KINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIE 330 (386)
Q Consensus 280 KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~ 330 (386)
+.-...++.+... +..+|=.+||+.++++.--|-..|=+.+..|+|.
T Consensus 4 ~~N~~~Il~~i~~----~g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~glv~ 50 (70)
T d1z6ra1 4 QTNAGAVYRLIDQ----LGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQ 50 (70)
T ss_dssp HHHHHHHHHHHHS----SCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHH----cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3334445566553 6789999999999999999999999999999997
No 39
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Probab=47.74 E-value=43 Score=23.78 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=53.5
Q ss_pred cCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHH
Q 043780 85 QYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVS 164 (386)
Q Consensus 85 ~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~ 164 (386)
+..+.++|+.+++++...= ...+.++ ...|.++...|+++++...++.+=.. +|.-..+++. .
T Consensus 28 ~~g~~~~A~~~~~~al~~~-------p~~~~a~--~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~~~a~~~-l 90 (112)
T d1hxia_ 28 KLANLAEAALAFEAVCQKE-------PEREEAW--RSLGLTQAENEKDGLAIIALNHARML-------DPKDIAVHAA-L 90 (112)
T ss_dssp HTTCHHHHHHHHHHHHHHS-------TTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHH-H
T ss_pred HHhhhHHHHHHHhhhcccc-------cccchhh--hhhhhhhhhhhhHHHhhccccccccc-------ccccccchHH-H
Confidence 3458999999998875432 2234444 44677788999999999998876432 1222233333 4
Q ss_pred HHHHHHhhcHHHHHHHHHHHh
Q 043780 165 SQYHKFHQEFAEFYKCALLYL 185 (386)
Q Consensus 165 s~~~k~~~~~~~~y~~~l~yL 185 (386)
+..|...|++++.....=+||
T Consensus 91 a~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 91 AVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 455666788887766655554
No 40
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=47.02 E-value=25 Score=25.36 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=34.0
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecC
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQ 335 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDq 335 (386)
+..+..+|++.++++..-|=+-+-..-..|||..+=+.
T Consensus 35 ~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~r~G 72 (98)
T d1r1ta_ 35 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQG 72 (98)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC
Confidence 56899999999999999999999888899999997554
No 41
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.27 E-value=9.8 Score=32.93 Aligned_cols=39 Identities=10% Similarity=0.306 Sum_probs=33.5
Q ss_pred HHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceE
Q 043780 289 IIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIE 330 (386)
Q Consensus 289 L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~ 330 (386)
|+|.. ...+|+++|++.++++.+++...+..-+..|++-
T Consensus 202 llFN~---~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~kll~ 240 (276)
T d1ldja3 202 LQYNT---EDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLV 240 (276)
T ss_dssp HGGGS---SSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEE
T ss_pred HhhcC---CCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEE
Confidence 56753 5689999999999999999999998888888875
No 42
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=44.82 E-value=16 Score=27.28 Aligned_cols=28 Identities=21% Similarity=0.110 Sum_probs=25.5
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
...+|+++||+.+|+|..-|...+=+|.
T Consensus 32 ~e~ls~~EIA~~lgiS~~aV~~~l~Ra~ 59 (106)
T d1xsva_ 32 LEDYSLSEIADTFNVSRQAVYDNIRRTG 59 (106)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3689999999999999999999998884
No 43
>d1zara1 a.4.5.56 (A:2-90) Rio2 serine protein kinase N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=44.44 E-value=21 Score=25.79 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecC
Q 043780 280 KINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQ 335 (386)
Q Consensus 280 KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDq 335 (386)
=.|+|+-+++.-+ +..-+|.+.|.+..+++..+|...+=+....|||.-+--+
T Consensus 13 dfRvL~aiE~gmr---nhE~VP~~lI~~~a~l~~~~~~~~L~~L~k~kLv~~~~~~ 65 (89)
T d1zara1 13 SWRIMDAIFKNLW---DYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKD 65 (89)
T ss_dssp HHHHHHHHHTTTT---TCSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHHHHhccc---cCccccHHHHHHHHCCCHHHHHHHHHHHHHcCCeeccCCC
Confidence 4689999998765 4789999999999999999999999999999999764433
No 44
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=43.54 E-value=13 Score=25.44 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=24.9
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
.+..|+++|++.++|+.+-|-.+--+|+.
T Consensus 23 ~~~~tl~eI~~~lgiSrerVrqie~~al~ 51 (68)
T d2p7vb1 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56799999999999999888887777764
No 45
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=43.45 E-value=9.2 Score=28.67 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=25.1
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSL 324 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi 324 (386)
..+|+++||+.+|+|..-|...+-+|.
T Consensus 31 ~~ls~~EIA~~lgiS~~aV~~~l~RA~ 57 (106)
T d1s7oa_ 31 DDYSLAEIADEFGVSRQAVYDNIKRTE 57 (106)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 579999999999999999999999884
No 46
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=43.42 E-value=52 Score=23.54 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=49.4
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCC---EEEEEeeccccCChhhHHHHHHHHHHHHHHHH
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEG---TVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVH 370 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~---~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v~ 370 (386)
.+.+|-++||+.++++...|-..|=+....|+|.=.-+..++ .++++...+ +=.+.+...+..|.+++.
T Consensus 34 ~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~~~~d~rg~~~~~~~~~~-----~~~~~i~~~~~~~~~k~~ 105 (109)
T d2d1ha1 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISS-----NILEKIRNDLLNCAKRME 105 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECT-----THHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCccHhHHHHHHHHHHHCCCEEEeecCCCCCceeEEEeeCCH-----HHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999866555543 355554433 334566777777776654
No 47
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=43.39 E-value=15 Score=25.91 Aligned_cols=40 Identities=10% Similarity=0.136 Sum_probs=35.8
Q ss_pred CCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecC
Q 043780 296 EDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQ 335 (386)
Q Consensus 296 ~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDq 335 (386)
+...+|..+||+.++++...|=.+|=+.-..|+|.=.-|.
T Consensus 18 ~~~~lt~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~D~ 57 (85)
T d3ctaa1 18 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTK 57 (85)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeccc
Confidence 3568999999999999999999999999999999976664
No 48
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=42.27 E-value=33 Score=25.00 Aligned_cols=57 Identities=14% Similarity=0.273 Sum_probs=45.8
Q ss_pred ccChHHHHHHcCCC-hhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHH
Q 043780 299 TIPLSIIAERTKLS-IEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWL 366 (386)
Q Consensus 299 ~isf~~Ia~~l~i~-~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~ 366 (386)
.+|=++||..++++ ..-|-..+=+--..|+|+- ..+.+.|. +.+.++.+..+++.|-
T Consensus 31 ~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~----~~~~i~I~-------D~~~L~~~A~~~de~~ 88 (100)
T d2bgca1 31 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY----KNSCFYVQ-------NLDYLKRYAPKLDEWF 88 (100)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE----ETTEEEES-------CHHHHHHHCHHHHHHH
T ss_pred ccCHHHHHHHhCCchHHHHHHHHHHHHHCCCEEE----cCCEEEEe-------CHHHHHHHhcccchhh
Confidence 36779999999997 5667777777777888874 45666665 8899999999999996
No 49
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=41.87 E-value=34 Score=23.13 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=35.0
Q ss_pred CCccChHHHHHHcCC-ChhHHHHHHHHHhhccceEEeecCCCCEEEE
Q 043780 297 DRTIPLSIIAERTKL-SIEDVEHLLMKSLSVHLIEGIIDQVEGTVHV 342 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i-~~~eVE~lvikAi~~gLI~G~IDqv~~~v~v 342 (386)
...-|+.+|++.+|+ |..-|-..|-..-..|+|+=. ....+.+.|
T Consensus 22 G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~-~~~~R~i~i 67 (71)
T d1jhfa1 22 GMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIV-SGASRGIRL 67 (71)
T ss_dssp SSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEEC-SSSSSCEEE
T ss_pred CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHCcCeecC-CCCCceeEe
Confidence 567899999999999 788999999988899998753 333343433
No 50
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=41.78 E-value=19 Score=26.38 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=39.3
Q ss_pred cChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHH
Q 043780 300 IPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRD 360 (386)
Q Consensus 300 isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~ 360 (386)
..|.+||+.++-+++.|-.++.+-++. .|+||. +.+.|+ ..++.++++.+-.
T Consensus 42 ~Nf~~Ia~~L~R~p~hl~kfl~~ELgt---~g~i~~--~~lii~----G~~~~~~i~~~l~ 93 (98)
T d1neea1 42 QNFREVADALNRDPQHLLKFLLRELGT---AGNLEG--GRAILQ----GKFTHFLINERIE 93 (98)
T ss_dssp SCHHHHHHHHCSSHHHHHHHHHHHCCS---CCCCBT--TTEEEE----SSCSSSHHHHHHH
T ss_pred echHHHHHHHCCCHHHHHHHHHHHhCC---ceEEeC--CEEEEE----eeeCHHHHHHHHH
Confidence 489999999999999999999998764 899984 456665 3345565555443
No 51
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=41.12 E-value=24 Score=26.58 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=43.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
..+|-.+||+.++++..-|=..|=+....|+|.-.-|..++...+-+.++
T Consensus 46 ~~~t~~~La~~~~i~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~ 95 (137)
T d1z91a1 46 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTE 95 (137)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECH
Confidence 47899999999999999999999999999999999998887655555554
No 52
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=40.94 E-value=27 Score=26.22 Aligned_cols=51 Identities=6% Similarity=-0.069 Sum_probs=43.3
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
+..++..+||+.++++...|=..|=+....|+|.=+-|+.++....-..++
T Consensus 47 ~~~~~~~~ia~~l~~~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~ 97 (125)
T d1p4xa2 47 KNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDD 97 (125)
T ss_dssp TCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCH
T ss_pred CCCccHHHHHHHHCCCcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECH
Confidence 457999999999999999999999999999999999999888655554443
No 53
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.81 E-value=34 Score=23.35 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhCCCCCCccChHHHHHHc-CCChhHHHHHHHHHhhccceEEeecCC
Q 043780 282 NILCLMEIIFSRPSEDRTIPLSIIAERT-KLSIEDVEHLLMKSLSVHLIEGIIDQV 336 (386)
Q Consensus 282 rlLaL~~L~~~r~~~~r~isf~~Ia~~l-~i~~~eVE~lvikAi~~gLI~G~IDqv 336 (386)
+++.++. ..| ...=++.++|++.+ ++|..+|..-+=.....|+|=-.||.-
T Consensus 10 ~V~~~i~---s~~-~~eGi~~~el~~~l~~~~~~~i~~aid~L~~eG~IYsTiDdd 61 (69)
T d1dpua_ 10 QVLNLIK---ACP-RPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDD 61 (69)
T ss_dssp HHHHHHH---HCC-CTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEEECSSTT
T ss_pred HHHHHHH---hCC-CccCcCHHHHHHHccCCCHHHHHHHHHHHHhCCceecccccc
Confidence 4445554 334 34569999999999 799999999999999999999888863
No 54
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=40.34 E-value=67 Score=23.93 Aligned_cols=70 Identities=6% Similarity=0.040 Sum_probs=50.9
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKV 369 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W~~~v 369 (386)
..++-.+|++.++++...|-..|=+....|+|.=.=|..++....-..++. +.+=+..+......|.+.+
T Consensus 49 ~~~t~~~la~~l~~~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~--G~~~~~~~~~~~~~~~~~~ 118 (141)
T d1lnwa_ 49 RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDE--GLAIHQHAEAIMSRVHDEL 118 (141)
T ss_dssp TTCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCccHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHH--HHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999988888876554444443 2233444444444444443
No 55
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=39.94 E-value=63 Score=23.84 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=42.3
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
.+.++..+|++.++++..-|=..|=+....|+|.-.-|..++....-.+++
T Consensus 48 ~~~~t~~eia~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~ 98 (125)
T d1p4xa1 48 ENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISE 98 (125)
T ss_dssp CSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCH
T ss_pred cCCcCHHHHHHHhCCCcchHHHHHHHHHHCCCceeecccCCCCeEEEEECH
Confidence 467999999999999999888888888999999999998877555444443
No 56
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=38.53 E-value=53 Score=22.92 Aligned_cols=54 Identities=26% Similarity=0.363 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhhhhHHHHH---------HHHHHHHHHHHHhhCC
Q 043780 237 WLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLL---------EKINILCLMEIIFSRP 294 (386)
Q Consensus 237 ~l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~~~~~~l~---------~KirlLaL~~L~~~r~ 294 (386)
.+.+.++.|-.|+.++|.+-.+.|. .+|....+...|+ .|..++.|++-+...|
T Consensus 7 a~~~~V~~fl~GT~eeY~~~vk~y~----~d~~~lea~~~LK~cVDtLteedK~~i~~liekI~~Sp 69 (77)
T d1ccda_ 7 GFLQVLEALLLGSESNYEAALKPFN----PASDLQNAGTQLKRLVDTLPQETRINIVKLTEKILTSP 69 (77)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTC----CCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHccC----CCHHHHHHHHHHHHHHhcCCHhhHHHHHHHHHHHHcCc
Confidence 3567889999999999999886543 3444444444443 4666777776555444
No 57
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=38.05 E-value=40 Score=24.02 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=33.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecC
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQ 335 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDq 335 (386)
+..+..+|++.++++..-|=+-+=..-..|||+.+=+.
T Consensus 30 ~~~~v~el~~~l~~s~~~vS~HL~~L~~~glv~~~r~G 67 (94)
T d1r1ua_ 30 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 67 (94)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHHHHCCceEEEEEC
Confidence 46788999999999999999988888889999997544
No 58
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=37.84 E-value=71 Score=23.51 Aligned_cols=51 Identities=4% Similarity=-0.048 Sum_probs=45.4
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR 348 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R 348 (386)
..++-.+|++.++++..-|=..|=+....|+|.-.-|..++....-..++.
T Consensus 43 ~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~ 93 (136)
T d2fbia1 43 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEK 93 (136)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHH
Confidence 468999999999999999999999999999999999999988777766653
No 59
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=37.45 E-value=47 Score=24.22 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=51.9
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHH
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 365 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W 365 (386)
++.++..+|++.++++...|=..|=+....|+|.=.-|..++....-..+|.- .+-++.+...+..|
T Consensus 47 ~~~~t~~~la~~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G--~~~~~~~~~~~~~~ 113 (115)
T d2frha1 47 EKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQ--RKKIESLLSRVNKR 113 (115)
T ss_dssp CSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHH--HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHH--HHHHHHHHHHHHhh
Confidence 46799999999999999999999999999999999999999977766666532 33344444444443
No 60
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=37.12 E-value=25 Score=27.77 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=37.6
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeecc
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQP 347 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~ 347 (386)
...++-.+|++.++++..-|-..|=+....|+|.-.-|..++....-..++
T Consensus 77 ~~~lt~~eLa~~l~i~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~ 127 (172)
T d2fbka1 77 PEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTP 127 (172)
T ss_dssp SSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECH
T ss_pred CCCcCHHHHHHHHCcCHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCH
Confidence 346999999999999998888888888899999999999888776666554
No 61
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.73 E-value=15 Score=25.42 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=28.3
Q ss_pred HHHHHHHhhC-CCCCCccChHHHHHHcCCChhHHHHHHHH
Q 043780 284 LCLMEIIFSR-PSEDRTIPLSIIAERTKLSIEDVEHLLMK 322 (386)
Q Consensus 284 LaL~~L~~~r-~~~~r~isf~~Ia~~l~i~~~eVE~lvik 322 (386)
+..++.+|.+ +..-..-.-.+||..+++++..|.-|.-.
T Consensus 13 l~~Le~~F~~~n~yP~~~~r~~LA~~lgL~~~~VqvWFqN 52 (72)
T d1uhsa_ 13 VEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQ 52 (72)
T ss_dssp HHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3456677854 32234456689999999999999999864
No 62
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.19 E-value=37 Score=22.95 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHH
Q 043780 277 LLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLL 320 (386)
Q Consensus 277 l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lv 320 (386)
+.+|++++-..+- +..++-.+||+.+||+...|-.++
T Consensus 10 ~~eK~~ii~~~e~-------g~k~sq~eIA~~fGv~~STvs~Il 46 (66)
T d1hlva1 10 FREKSRIIQEVEE-------NPDLRKGEIARRFNIPPSTLSTIL 46 (66)
T ss_dssp HHHHHHHHHHHHH-------CTTSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHc-------CCcchHHHHHHHhCCChhHHHHHH
Confidence 4578888888774 456889999999999998887765
No 63
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=34.99 E-value=30 Score=27.55 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=32.7
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEee
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGII 333 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~I 333 (386)
.+..|..+||+.++++..-|=+-+=..-..|||+..-
T Consensus 30 ~~~~s~~ela~~lg~s~~~v~~hl~~L~~~glv~~~~ 66 (190)
T d1ulya_ 30 NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKR 66 (190)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3579999999999999999999998999999997643
No 64
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=33.46 E-value=24 Score=25.27 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=31.9
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEe
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~ 332 (386)
+.+|.++||+.++++++-++.++--+-+.|+++-.
T Consensus 39 gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~ 73 (92)
T d1qzza1 39 GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGG 73 (92)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCHHHHHHHHCcCchHHHHHHHHHHHCCCeeee
Confidence 57999999999999999999999999999999753
No 65
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=32.89 E-value=35 Score=27.41 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCC
Q 043780 279 EKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQV 336 (386)
Q Consensus 279 ~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv 336 (386)
.+.++|.++. .+..+..+||+.++++..-|-+-+=..-..|||...-++.
T Consensus 16 ~R~~Il~~L~--------~~~~~~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~~~~~ 65 (194)
T d2p4wa1 16 TRRRILFLLT--------KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKI 65 (194)
T ss_dssp HHHHHHHHHH--------HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCB
T ss_pred HHHHHHHHHH--------hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeec
Confidence 3456666552 2568999999999999999999999988999999876543
No 66
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=32.74 E-value=27 Score=27.52 Aligned_cols=51 Identities=8% Similarity=-0.093 Sum_probs=40.5
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR 348 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R 348 (386)
..+|..+||+.++++..-|=..|=+....|+|.-.-|+.++....-.++|+
T Consensus 54 ~~~t~~~la~~~~l~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~ 104 (162)
T d2fxaa1 54 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEE 104 (162)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHH
T ss_pred CCcCHHHHHHHHcCCchhhHHHHHHHHHCCCceeecccccCeeeeeccCHh
Confidence 468999999999999999999999999999999999999988877776654
No 67
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=32.33 E-value=31 Score=25.11 Aligned_cols=43 Identities=16% Similarity=0.020 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhcc
Q 043780 277 LLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVH 327 (386)
Q Consensus 277 l~~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~g 327 (386)
.++|+.+..=+- .+.+|.+|.++..+|+.+|.+.|+-.....|
T Consensus 36 a~RKaaVV~av~--------~Gl~S~~EAcrrY~LS~eEf~~W~~a~~~hG 78 (93)
T d2oa4a1 36 ASRKIAVVRGVI--------YGLITLAEAKQTYGLSDEEFNSWVSALAEHG 78 (93)
T ss_dssp HHHHHHHHHHHH--------HTTCCHHHHHHTTCSSHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHH--------cCcCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 357777664332 4799999999999999999999998776665
No 68
>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.31 E-value=95 Score=23.75 Aligned_cols=80 Identities=6% Similarity=0.046 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHH
Q 043780 279 EKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSL 358 (386)
Q Consensus 279 ~KirlLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L 358 (386)
.|=.++-|..+. .+...|.+|.+.++|+..-+-.-+=+....|||+=..++....+ .-..+++ ..++..+
T Consensus 19 ~kW~l~Il~~l~------~G~~rf~el~~~lgis~~vLs~rL~~L~~~gLv~r~~~~~p~r~-~Y~LT~~---G~~L~pi 88 (142)
T d2f2ea1 19 DGWSMLIVRDAF------EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQ-EYRLTDK---GRALFPL 88 (142)
T ss_dssp SSSHHHHHHHHH------TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCE-EEEECHH---HHTTHHH
T ss_pred CCCHHHHHHHHH------cCCCCHHHHHHHhhccHHHHHHHHHHHHHhcceeeecCCCCCee-EEecCcC---cchHHHH
Confidence 344445555553 35788999999999999888888888888999984443333322 1222332 1345567
Q ss_pred HHHHHHHHHH
Q 043780 359 RDRLDSWLGK 368 (386)
Q Consensus 359 ~~~L~~W~~~ 368 (386)
-..|..|.++
T Consensus 89 l~~l~~W~~~ 98 (142)
T d2f2ea1 89 LVAIRQWGED 98 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7788888754
No 69
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=32.21 E-value=35 Score=25.05 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccccCChhhHHHHHHHHHHH
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 365 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R~l~~~q~~~L~~~L~~W 365 (386)
...++-.+|++.++++...|=..|=+....|+|.=.-|..++....-..++. +.+-.+.+...+.+|
T Consensus 46 ~~~~t~~ela~~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~--G~~~~~~~~~~~~~~ 112 (115)
T d1hsja1 46 SNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDT--QKANIQKLISELEEY 112 (115)
T ss_dssp CSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSS--HHHHHHHHHHHHGGG
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHH--HHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999888888887666666554 344555555555544
No 70
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=32.09 E-value=35 Score=21.92 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=32.0
Q ss_pred cChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEE
Q 043780 300 IPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVS 343 (386)
Q Consensus 300 isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt 343 (386)
..|.+|++.++=+++.|=.++.+=++ ..|+||. +.+.|+
T Consensus 12 ~Nf~eI~~~L~R~p~hv~kfl~~ELg---t~g~~~~--~rlii~ 50 (52)
T d1k8ba_ 12 RNFRELAKAVNRDEEFFAKYLLKETG---SAGNLEG--GRLILQ 50 (52)
T ss_dssp CCHHHHHHHHHTCHHHHHHHHHHHHS---SEEEEET--TEEEEE
T ss_pred ecHHHHHHHhCCCHHHHHHHHHHHhC---CceeeeC--CEEEEe
Confidence 38999999999999999999998866 6889984 455543
No 71
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.58 E-value=81 Score=22.26 Aligned_cols=89 Identities=12% Similarity=0.013 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSS 165 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s 165 (386)
..+.++|+++.++..+.= ...+.++. ..|.+++..|+++++....+.+-..-+. ++ .+|| -.+
T Consensus 16 ~g~~~eAi~~~~~al~~~-------p~~~~~~~--~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~---~~~~-~~g 78 (117)
T d1elwa_ 16 VGNIDDALQCYSEAIKLD-------PHNHVLYS--NRSAAYAKKGDYQKAYEDGCKTVDLKPD----WG---KGYS-RKA 78 (117)
T ss_dssp TTCHHHHHHHHHHHHHHC-------TTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHCTT----CH---HHHH-HHH
T ss_pred cCCHHHHHHHHHHHHhcC-------Ccchhhhh--cccccccccccccccchhhhhHHHhccc----hh---hHHH-HHH
Confidence 347899999888764322 33455554 4567777789999988877766433111 12 2333 344
Q ss_pred HHHHHhhcHHHHHHHHHHHhccCCCC
Q 043780 166 QYHKFHQEFAEFYKCALLYLAYTSVE 191 (386)
Q Consensus 166 ~~~k~~~~~~~~y~~~l~yL~~~~~~ 191 (386)
..+...|+|.+.....-+.+...|.+
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~p~~ 104 (117)
T d1elwa_ 79 AALEFLNRFEEAKRTYEEGLKHEANN 104 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 55667888887777777766655543
No 72
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=31.46 E-value=45 Score=21.89 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=29.8
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceE
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIE 330 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~ 330 (386)
..++-.+||+.++++.--|=..|=+.-..|||.
T Consensus 20 ~~v~~~~iA~~L~vs~~SVs~mikrL~~~GlV~ 52 (61)
T d2ev0a1 20 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLI 52 (61)
T ss_dssp SSCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCccHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 578889999999999999999999999999985
No 73
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=31.02 E-value=27 Score=23.02 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=30.6
Q ss_pred ccChHHHHHHcCCChhHHHHHHHHHhhccceEE
Q 043780 299 TIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEG 331 (386)
Q Consensus 299 ~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G 331 (386)
.+|=.+||+.++++..-|-..|=+.+..|+|.=
T Consensus 12 pisr~eLa~~~gls~~TVs~~v~~L~~~GlV~e 44 (62)
T d2hoea1 12 PVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 44 (62)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 589999999999999999999999999999953
No 74
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=30.74 E-value=69 Score=21.87 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhhhhHHHHH---------HHHHHHHHHHHH
Q 043780 238 LYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLL---------EKINILCLMEII 290 (386)
Q Consensus 238 l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~~~~~~l~---------~KirlLaL~~L~ 290 (386)
+.+-++.|-.|+.++|.+..+.|. .+|+...+...|+ .|..++.|++=+
T Consensus 6 ~~~~v~~fl~GT~eeY~~~vk~y~----~~~~~le~~~~lK~cvDtLt~edK~~i~~liekI 63 (70)
T d1utga_ 6 FAHVIENLLLGTPSSYETSLKEFE----PDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKI 63 (70)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTC----CCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHccC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 557788999999999999986653 3444444444442 355555555543
No 75
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=30.67 E-value=26 Score=25.06 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCCccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 296 EDRTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 296 ~~r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
+....|+++|++.++|+.+-|-.+-.+|+.
T Consensus 35 ~~~~~tl~eI~~~lgiSrERVRQie~~al~ 64 (87)
T d1ttya_ 35 DGKPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp TSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 356899999999999998877776666654
No 76
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=30.58 E-value=91 Score=22.54 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=33.3
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCC
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVE 337 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~ 337 (386)
.+.++-.+|++.++++...|=+-+=..-..|||+.+=++..
T Consensus 43 ~~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlv~~~r~G~~ 83 (108)
T d1u2wa1 43 DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKL 83 (108)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----C
T ss_pred CCCccHHHHHHHHccChhHHHHHHHHHHHCCeeEEEEECCE
Confidence 36799999999999999999999888888999999865543
No 77
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=30.43 E-value=49 Score=24.60 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=42.2
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeec
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQ 346 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~ 346 (386)
..+|-.+|++.++++...+-..|=+....|+|+-+-|..++....-..+
T Consensus 47 ~~~t~~~la~~l~~~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT 95 (136)
T d2bv6a1 47 SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLT 95 (136)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEEC
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEEeecCCcccchhhccC
Confidence 4689999999999999999999999999999999999988855554444
No 78
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.19 E-value=65 Score=21.22 Aligned_cols=34 Identities=24% Similarity=0.069 Sum_probs=30.9
Q ss_pred CCccChHHHHHHcCCChhHHHHHHHHHhhccceE
Q 043780 297 DRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIE 330 (386)
Q Consensus 297 ~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~ 330 (386)
...++-.+||+.++++.-.|=..|=+.-..|+|.
T Consensus 21 ~~~v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~ 54 (63)
T d2isya1 21 GVTPLRARIAERLDQSGPTVSQTVSRMERDGLLR 54 (63)
T ss_dssp TCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 4578999999999999999999999999999986
No 79
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=29.71 E-value=63 Score=23.99 Aligned_cols=51 Identities=6% Similarity=0.043 Sum_probs=44.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEEEEeeccc
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPR 348 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~vt~v~~R 348 (386)
..++-.+|++.++++...|-..|=+....|+|.-+-|..++....-.+++.
T Consensus 47 ~~~t~~ela~~~~i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~ 97 (138)
T d1jgsa_ 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTG 97 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHH
T ss_pred cCCCHHHHHHHHCCCHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHH
Confidence 358999999999999999999999999999999999988886666655553
No 80
>d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=28.69 E-value=5.6 Score=30.72 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=46.9
Q ss_pred ChHHHHHHcCCChhHHHHHHHHHhhccceEEeecCCCCEEE--EEeeccccCChhhHHHHHHHH
Q 043780 301 PLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVH--VSWVQPRVLGIPQIKSLRDRL 362 (386)
Q Consensus 301 sf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDqv~~~v~--vt~v~~R~l~~~q~~~L~~~L 362 (386)
=|.+||+..+.+..-||.-+-.||....-+|..+..++.+- ++....|.=+.+=+..+.++|
T Consensus 50 LYp~IA~ky~TT~s~VERaIRhaIevaW~rG~~~~l~~ifGy~~~~~k~kPTNsEFIa~iad~l 113 (119)
T d1fc3a_ 50 LYPDIAKKYNTTASRVERAIRHAIEVAWSRGNLESISSLFGYTVSVSKAKPTNSEFIAMVADKL 113 (119)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHSSCTTTTHHHHCHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHhCccCccCCCCCChHHHHHHHHHHH
Confidence 38999999999999999999999999999999988877653 333344443334455555555
No 81
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.76 E-value=24 Score=22.59 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=25.5
Q ss_pred HHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHH
Q 043780 286 LMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMK 322 (386)
Q Consensus 286 L~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvik 322 (386)
.++-+|.....-..-.-.+||..+|+++..|..|...
T Consensus 11 ~Le~~F~~~~~P~~~~~~~LA~~lgl~~~qV~~WFqN 47 (53)
T d1le8a_ 11 FLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFIN 47 (53)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4444554322234556678999999999999998753
No 82
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=27.70 E-value=26 Score=23.12 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=21.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKS 323 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikA 323 (386)
.-.|..+||+.+++++..|+..+-++
T Consensus 18 ~G~s~~eIA~~l~iS~~TV~~~~~~i 43 (65)
T d1l3la1 18 VGKTMEEIADVEGVKYNSVRVKLREA 43 (65)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46899999999999999887665443
No 83
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.09 E-value=1.2e+02 Score=22.84 Aligned_cols=61 Identities=11% Similarity=-0.030 Sum_probs=37.5
Q ss_pred HHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCC
Q 043780 121 QIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
-.|.+++..|++++|...++.+=.. +|.--.++|+.+ ..|...|+|.+.....-..+..-|
T Consensus 67 nla~~y~k~~~~~~A~~~~~~al~~-------~p~~~~a~~~~g-~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 67 NLAMCHLKLQAFSAAIESCNKALEL-------DSNNEKGLSRRG-EAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhhhhcccccchhhhhhhc-------cccchhhhHHHH-HHHHHhhhHHHHHHHHHHHHHhCC
Confidence 3577788899999999888876543 121122344444 445567888766666555555433
No 84
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Probab=26.94 E-value=56 Score=23.08 Aligned_cols=76 Identities=7% Similarity=-0.060 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHH
Q 043780 55 LIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKE 134 (386)
Q Consensus 55 ~~~ly~~fi~~f~~kin~l~l~~i~~~v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~ 134 (386)
-+..|+..|...-+ |+-.+... ..+.....+.++|+..+++..+.- ...+.++ ...|.++...|++++
T Consensus 35 A~~~~~~al~~~p~--~~~a~~~l-g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~--~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 35 AALAFEAVCQKEPE--REEAWRSL-GLTQAENEKDGLAIIALNHARMLD-------PKDIAVH--AALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHHHHHHHHSTT--CHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccc--cchhhhhh-hhhhhhhhhHHHhhcccccccccc-------cccccch--HHHHHHHHHCCCHHH
Confidence 34455555433221 23333333 334456678999999998764433 2233444 557788888899999
Q ss_pred HHHHHHhc
Q 043780 135 CKKLLEDG 142 (386)
Q Consensus 135 ~~~~l~~~ 142 (386)
+.+.++++
T Consensus 103 A~~~l~~~ 110 (112)
T d1hxia_ 103 ALASLRAW 110 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 85
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.90 E-value=46 Score=21.62 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHH
Q 043780 286 LMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLM 321 (386)
Q Consensus 286 L~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvi 321 (386)
.++-+|.....-..-.-.+||..+|+++..|..|.-
T Consensus 15 ~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFq 50 (60)
T d1yz8p1 15 QLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 50 (60)
T ss_dssp HHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHCCChHHHHHHhH
Confidence 445567543333445567899999999999998874
No 86
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.90 E-value=1.1e+02 Score=22.44 Aligned_cols=87 Identities=13% Similarity=0.039 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Q 043780 86 YPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSS 165 (386)
Q Consensus 86 ~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y~~~s 165 (386)
.++.++|++..++..+.- ...+..+ ...|.+++..|++++|...++.+=.. +|.-..+++.. +
T Consensus 23 ~~~y~~A~~~~~~al~~~-------p~~~~~~--~~lg~~~~~~~~~~~A~~~~~kal~~-------~p~~~~a~~~~-g 85 (159)
T d1a17a_ 23 AKDYENAIKFYSQAIELN-------PSNAIYY--GNRSLAYLRTECYGYALGDATRAIEL-------DKKYIKGYYRR-A 85 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS-------TTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHH-H
T ss_pred cCCHHHHHHHhhhccccc-------hhhhhhh--hhhHHHHHhccccchHHHHHHHHHHH-------cccchHHHHHH-H
Confidence 457888888887654322 2345555 44567777779999988777765332 12222333333 3
Q ss_pred HHHHHhhcHHHHHHHHHHHhccCC
Q 043780 166 QYHKFHQEFAEFYKCALLYLAYTS 189 (386)
Q Consensus 166 ~~~k~~~~~~~~y~~~l~yL~~~~ 189 (386)
..+...|+|.+......+.+..-|
T Consensus 86 ~~~~~~g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 86 ASNMALGKFRAALRDYETVVKVKP 109 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 445567888877776666665544
No 87
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.59 E-value=90 Score=21.20 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=40.2
Q ss_pred HHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccc
Q 043780 82 VSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKS 144 (386)
Q Consensus 82 v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~ 144 (386)
+.-+..|.++|+..+++..+............+.++- ..|..+...|+++++.+..+++=.
T Consensus 14 ~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~--~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLD--YLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHH--HHhhHHHhcCChHHHHHHHHHHHH
Confidence 3445568999999999887666422122223344443 457777788999999988776543
No 88
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.19 E-value=1.5e+02 Score=23.79 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=11.3
Q ss_pred HHHHhcccCChHHHHHHHHhc
Q 043780 122 IAMFKLEQGDRKECKKLLEDG 142 (386)
Q Consensus 122 ~~~~~l~~~~l~~~~~~l~~~ 142 (386)
.|.++...|+++++.+..+.+
T Consensus 212 lg~~~~~~g~~~~A~~~~~~a 232 (323)
T d1fcha_ 212 LGATLANGNQSEEAVAAYRRA 232 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcccccccchhHHHHHHHH
Confidence 344555556666665555543
No 89
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=25.76 E-value=30 Score=22.98 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=23.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHHHhh
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMKSLS 325 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvikAi~ 325 (386)
.-.|..+||+.+++++..|+.-+-++..
T Consensus 20 ~G~s~~eIA~~l~iS~~TV~~~~~~i~~ 47 (67)
T d1a04a1 20 QGLPNKMIARRLDITESTVKVHVKHMLK 47 (67)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3589999999999999999987766543
No 90
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.78 E-value=91 Score=23.51 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=32.2
Q ss_pred HHHHhhhHHHHHHHHHH----HHhchhhcCchhHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 043780 26 DLYQKKLWHQLTLKLEQ----FVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSR 84 (386)
Q Consensus 26 ~l~~~KLWhqLt~~l~~----~~~~~~~~~~~~~~~ly~~fi~~f~~kin~l~l~~i~~~v~~ 84 (386)
+-+.+-|.|.|-..|.. +...+.|...-.+-++..+|=..| .=||+.||.|+....+
T Consensus 51 e~~a~~l~~~ll~~L~~q~~~~~~e~~fl~~~~l~~~~~~~q~~y--~~nP~~L~~iI~~cL~ 111 (124)
T d1bgfa_ 51 ETMATILLQNLLIQLDEQLGRVSKEKNLLLIHNLKRIRKVLQGKF--HGNPMHVAVVISNCLR 111 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHH
Confidence 44556666666666654 555555543222333333333333 2589999999887765
No 91
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.54 E-value=26 Score=22.78 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=23.4
Q ss_pred HHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHH
Q 043780 286 LMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLM 321 (386)
Q Consensus 286 L~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvi 321 (386)
.++-+|.....-..-.-.+||..+|+++..|.-|.-
T Consensus 13 ~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFq 48 (57)
T d1jgga_ 13 RLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQ 48 (57)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHhCCChhHhhhcch
Confidence 345555432122233447899999999999998863
No 92
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.39 E-value=27 Score=22.65 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=23.1
Q ss_pred HHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHH
Q 043780 286 LMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLM 321 (386)
Q Consensus 286 L~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvi 321 (386)
.++-+|.....-..-.=.+||..|+|++..|.-|..
T Consensus 14 ~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~~WFq 49 (57)
T d2e1oa1 14 ELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQ 49 (57)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHhhh
Confidence 344455432112233345799999999999999875
No 93
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}
Probab=24.18 E-value=1.3e+02 Score=22.39 Aligned_cols=89 Identities=7% Similarity=-0.024 Sum_probs=52.4
Q ss_pred HHhcCCChHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHHHhcccCChHHHHHHHHhccccccccCCCCHHHHHHHH
Q 043780 82 VSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYY 161 (386)
Q Consensus 82 v~~~~~d~~~al~fl~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~l~~~~~v~~~v~a~~y 161 (386)
+...+.+..+|+++.+++.+.- ...+-.+. ..+..+...|++++|...+..+-..=++ ++.++..+.
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~--~~~~~~~~l~~~~~A~~~~~~al~l~P~----n~~~~~~l~ 139 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLD-------SANEKGLY--RRGEAQLLMNEFESAKGDFEKVLEVNPQ----NKAARLQIF 139 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHSCTT----CHHHHHHHH
T ss_pred HHHHhhhcccchhhhhhhhhcc-------cchHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHH
Confidence 3345778999999998875432 22333343 4567788889999999999987542112 356666655
Q ss_pred HHHHHHHHHhhcHHHHHHHHHH
Q 043780 162 WVSSQYHKFHQEFAEFYKCALL 183 (386)
Q Consensus 162 ~~~s~~~k~~~~~~~~y~~~l~ 183 (386)
.+....-+........|+..+.
T Consensus 140 ~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 140 MCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 5544433222222344444433
No 94
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=23.93 E-value=77 Score=19.51 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHHhhc
Q 043780 283 ILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSV 326 (386)
Q Consensus 283 lLaL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~ 326 (386)
+-.+++..-.+. .+.++.++||+.++++...+..+.=+..+.
T Consensus 5 i~~v~~yI~~~~--~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~ 46 (54)
T d1bl0a1 5 IHSILDWIEDNL--ESPLSLEKVSERSGYSKWHLQRMFKKETGH 46 (54)
T ss_dssp HHHHHHHHHTTT--TSCCCCHHHHHHSSSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcc--CCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 334555555554 578999999999999999988887776554
No 95
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=23.81 E-value=77 Score=23.19 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccC-------hHHHHHHcCCC---hhHHHHHHHHHhhccceEEeecCCC
Q 043780 278 LEKINILCLMEIIFSRPSEDRTIP-------LSIIAERTKLS---IEDVEHLLMKSLSVHLIEGIIDQVE 337 (386)
Q Consensus 278 ~~KirlLaL~~L~~~r~~~~r~is-------f~~Ia~~l~i~---~~eVE~lvikAi~~gLI~G~IDqv~ 337 (386)
.+|+-|.|++.+..+.. ...++ |..|++..+++ ..++=.++-+.=..|+|..+....+
T Consensus 12 h~klvL~ai~~~~~~~~--~~~ittgevy~~Y~~lc~~~~~~pls~rr~~~~l~~Le~lGiI~~r~~~~g 79 (112)
T d1fnna1 12 HEKLFLLAIVRSLKISH--TPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRG 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHC--SSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---
T ss_pred HHHHHHHHHHHHHhcCC--CCCccHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHhCCCeeeeecccC
Confidence 48999999988765321 23333 88999999983 3578899999889999999987543
No 96
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.48 E-value=38 Score=21.50 Aligned_cols=37 Identities=8% Similarity=0.242 Sum_probs=24.7
Q ss_pred HHHHHHhhCC-CCCCccChHHHHHHcCCChhHHHHHHH
Q 043780 285 CLMEIIFSRP-SEDRTIPLSIIAERTKLSIEDVEHLLM 321 (386)
Q Consensus 285 aL~~L~~~r~-~~~r~isf~~Ia~~l~i~~~eVE~lvi 321 (386)
++++-.|..- ..-..-.-.+||+.||++...|.-|.-
T Consensus 6 ~iLE~~F~~~~~~P~~~~~~~LA~~~~ls~~qV~~WFq 43 (52)
T d1x2ma1 6 AILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFR 43 (52)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4556666431 111233446899999999999999875
No 97
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.77 E-value=26 Score=21.96 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=24.3
Q ss_pred HHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHH
Q 043780 286 LMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLM 321 (386)
Q Consensus 286 L~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvi 321 (386)
.++-+|.....-..-.-.+||..+|++...|.-|.-
T Consensus 12 ~Le~~F~~n~~P~~~~~~~LA~~l~l~~~~V~~WFq 47 (50)
T d1s7ea1 12 TLHAIFKENKRPSKELQITISQQLGLELSTVSNFFM 47 (50)
T ss_dssp HHHHHTTSSCSSTHHHHHHHHTTSCSSSHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhhcCC
Confidence 455566542222344557889999999999988864
No 98
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.76 E-value=38 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHHH
Q 043780 286 LMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKS 323 (386)
Q Consensus 286 L~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvikA 323 (386)
+++-+|.....-..-...+||..++++..+|..|....
T Consensus 17 ~Le~~F~~n~~Ps~~~~~~La~~~gL~~~qV~~WF~Nr 54 (76)
T d2ecca1 17 ILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDT 54 (76)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34445543222345567889999999999999999865
No 99
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.99 E-value=42 Score=22.50 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHH
Q 043780 285 CLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMK 322 (386)
Q Consensus 285 aL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvik 322 (386)
..++-+|.....-..-.-.+||..+++++..|.-|.-.
T Consensus 14 ~~Le~~F~~n~yP~~~~r~~LA~~l~L~~~~V~~WFqN 51 (68)
T d2cuea1 14 EALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSN 51 (68)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCcChhheeecCcc
Confidence 34555675432223444568999999999999998754
No 100
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.76 E-value=31 Score=22.41 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=20.1
Q ss_pred CccChHHHHHHcCCChhHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMK 322 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvik 322 (386)
..-...+||+.+|+++..|.-|.-.
T Consensus 25 ~~~~~~~La~~l~l~~~~V~~WFqN 49 (58)
T d1au7a1 25 SSQEIMRMAEELNLEKEVVRVWFCN 49 (58)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3445578999999999999998754
No 101
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.39 E-value=32 Score=22.27 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=20.3
Q ss_pred CccChHHHHHHcCCChhHHHHHHHH
Q 043780 298 RTIPLSIIAERTKLSIEDVEHLLMK 322 (386)
Q Consensus 298 r~isf~~Ia~~l~i~~~eVE~lvik 322 (386)
..-...+||..+|+++..|.-|...
T Consensus 24 ~~~~~~~LA~~lgL~~~qV~~WFqN 48 (57)
T d1e3oc1 24 TSEDITLIAEQLNMEKEVIRVWFSN 48 (57)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445678999999999999999764
No 102
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.85 E-value=41 Score=22.46 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=25.2
Q ss_pred HHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHH
Q 043780 286 LMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMK 322 (386)
Q Consensus 286 L~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvik 322 (386)
.++-+|.....-..-.-++||..+|++...|..|...
T Consensus 17 ~Le~~F~~n~~Ps~~~~~~LA~~l~l~~~~V~~WFqN 53 (66)
T d1bw5a_ 17 TLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQN 53 (66)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCcCHHHhhhhhHh
Confidence 4445554322223444568999999999999999875
No 103
>d2ejna1 a.101.1.1 (A:1-72) Allergen Fel d I-A chain {Cat (Felis catus) [TaxId: 9685]}
Probab=20.17 E-value=70 Score=21.81 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhhcCchhhhhHHHH
Q 043780 238 LYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKL 277 (386)
Q Consensus 238 l~~LL~~f~~G~l~~f~~~~~~~~~~~~~~~~L~~~~~~l 277 (386)
+.+=+..|-.|+.++|.+..++|+ .+|....+.+.+
T Consensus 6 l~~~V~LFl~GT~eeYveyvkqY~----~~p~vLEnae~i 41 (72)
T d2ejna1 6 VKRDVDLFLTGTPDEYVEQVAQYK----ALPVVLENARIL 41 (72)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHC----CCHHHHHHHHHH
T ss_pred HHhhhhhhhcCChHHHHHHHHHhc----CCHHHHHhHHHH
Confidence 345567899999999999987654 466555555544
No 104
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.16 E-value=38 Score=23.24 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=26.4
Q ss_pred HHHHHHhhCCCCCCccChHHHHHHcCCChhHHHHHHHH
Q 043780 285 CLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMK 322 (386)
Q Consensus 285 aL~~L~~~r~~~~r~isf~~Ia~~l~i~~~eVE~lvik 322 (386)
.+++-+|.....-..-..++||..++++...|.-|...
T Consensus 17 ~~Le~~F~~~~~P~~~~r~~LA~~l~l~~~~V~~WFqN 54 (76)
T d2ecba1 17 RVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTE 54 (76)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHhHHH
Confidence 34555565322233445678999999999999999874
Done!