BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043781
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 10/68 (14%)
Query: 5 FQDFGKQVKKLTSNLRAIQAVLNDAEQRQVKEASVRLWLDQLKEASYDMEDVLDEWITAR 64
+D GK+++ + L I V R+ ++ +LW D+++E SY +EDV+D+++
Sbjct: 28 IEDLGKELESXNAALIKIGEV-----PREQLDSQDKLWADEVRELSYVIEDVVDKFL--- 79
Query: 65 LKLQIEGV 72
+Q++G+
Sbjct: 80 --VQVDGI 85
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 233 EKLRHLTLTLGLRAKFPVSIFDAKKIWG-WEVFGRNTSTRPGMVSR 277
+ R L G K PV FDA+K WG + V G T PG+ SR
Sbjct: 135 DSARRCGLYFGRLEKQPV--FDAEKFWGEYSVDGLTVKTLPGVFSR 178
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 16/62 (25%)
Query: 96 KQKEVFNFNVI-------RGSTEKSERIHSTALIN---VSDVR------GMGGIGKTTLA 139
K + VF+ N I RG E RI+ L++ +SDV G GIGKTTLA
Sbjct: 10 KDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69
Query: 140 QF 141
+F
Sbjct: 70 KF 71
>pdb|4HXC|A Chain A, Crystal Structure Of A Putative Glycosyl Hydrolase
(Bacuni_00951) From Bacteroides Uniformis Atcc 8492 At
2.15 A Resolution
Length = 263
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 239 TLTLGLRAKFPVSIFDAKKIWGWEVFGRNTSTRPGMVSRYLMAEFCEPVC 288
+L L + A ++IFD K + GW +G++ + SR+++ + C C
Sbjct: 26 SLNLPIDADGYITIFDGKSLDGWRGYGKDK-----VPSRWIIEDGCLKFC 70
>pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3 In Complex With Nadp+
pdb|4DQL|B Chain B, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3 In Complex With Nadp+
Length = 393
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 21 AIQAVL--NDAEQRQVKEASVRLWLDQLKEASYDMEDV 56
A++A L + A+ QV EA RLWL QL+E +DV
Sbjct: 353 AVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDV 390
>pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3
pdb|4DQK|B Chain B, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3
Length = 391
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 21 AIQAVL--NDAEQRQVKEASVRLWLDQLKEASYDMEDV 56
A++A L + A+ QV EA RLWL QL+E +DV
Sbjct: 351 AVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDV 388
>pdb|2ETS|A Chain A, Crystal Structure Of A Bacterial Domain Of Unknown
Function From Duf1798 Family (Mw1337) From
Staphylococcus Aureus Subsp. Aureus At 2.25 A Resolution
Length = 128
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 18 NLRAIQAVLNDAEQRQV----KEASVRLWLDQLKEASYDMEDVLD 58
N R + ++ + EQ V K S +L++++LK YD++++LD
Sbjct: 75 NSRKFELLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDLQNILD 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,856,068
Number of Sequences: 62578
Number of extensions: 360238
Number of successful extensions: 1092
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 14
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)