Query 043781
Match_columns 297
No_of_seqs 208 out of 1896
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:17:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.2E-33 1.6E-37 278.2 20.6 253 3-271 21-338 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 4.5E-22 9.8E-27 178.3 5.4 130 122-267 19-174 (287)
3 PLN03210 Resistant to P. syrin 99.7 8.8E-18 1.9E-22 176.0 12.4 130 122-269 207-370 (1153)
4 COG2256 MGS1 ATPase related to 98.8 4.8E-09 1E-13 95.6 5.2 118 124-258 50-168 (436)
5 PF05729 NACHT: NACHT domain 98.7 7E-08 1.5E-12 78.6 8.8 122 126-257 4-154 (166)
6 cd01128 rho_factor Transcripti 98.7 4E-08 8.6E-13 86.2 6.0 69 125-194 19-115 (249)
7 PRK06893 DNA replication initi 98.6 1E-07 2.2E-12 82.9 7.4 124 126-266 43-177 (229)
8 PRK09376 rho transcription ter 98.5 7.5E-08 1.6E-12 88.7 4.6 67 126-193 173-267 (416)
9 PF13173 AAA_14: AAA domain 98.4 6.7E-07 1.5E-11 70.5 6.5 116 125-257 5-126 (128)
10 KOG2028 ATPase related to the 98.4 3.8E-07 8.3E-12 82.3 4.8 116 125-257 165-285 (554)
11 PRK13342 recombination factor 98.4 1.1E-06 2.5E-11 82.9 8.0 74 126-206 40-116 (413)
12 TIGR03015 pepcterm_ATPase puta 98.3 4.8E-06 1E-10 73.8 11.1 77 125-204 46-145 (269)
13 PRK13341 recombination factor 98.3 1.4E-06 3.1E-11 87.2 7.7 115 126-258 56-173 (725)
14 PF13401 AAA_22: AAA domain; P 98.3 7.3E-07 1.6E-11 70.0 4.1 91 126-230 8-124 (131)
15 TIGR03420 DnaA_homol_Hda DnaA 98.3 3.7E-06 8E-11 72.5 8.7 115 126-257 42-163 (226)
16 TIGR00767 rho transcription te 98.2 1.9E-06 4.2E-11 79.8 6.1 69 125-194 171-267 (415)
17 PRK00411 cdc6 cell division co 98.2 6.2E-06 1.3E-10 77.3 9.2 69 126-194 59-150 (394)
18 cd00009 AAA The AAA+ (ATPases 98.2 7.6E-06 1.6E-10 64.5 7.7 102 125-232 22-130 (151)
19 PRK08727 hypothetical protein; 98.1 1E-05 2.3E-10 70.4 8.6 117 125-258 44-167 (233)
20 PRK08084 DNA replication initi 98.1 1.9E-05 4.1E-10 68.9 8.5 117 125-258 48-172 (235)
21 PRK05564 DNA polymerase III su 98.0 2.3E-05 5E-10 71.3 9.0 121 127-261 31-160 (313)
22 TIGR00678 holB DNA polymerase 98.0 5.2E-05 1.1E-09 63.7 10.1 123 127-263 19-165 (188)
23 PRK14957 DNA polymerase III su 98.0 4.1E-05 8.9E-10 74.4 9.5 120 127-260 43-185 (546)
24 PRK08116 hypothetical protein; 97.9 3.2E-05 6.9E-10 68.8 7.8 91 125-232 117-221 (268)
25 PRK05642 DNA replication initi 97.9 3.8E-05 8.2E-10 67.0 8.0 117 125-258 48-171 (234)
26 PRK06645 DNA polymerase III su 97.9 7.2E-05 1.6E-09 72.1 10.6 121 127-261 48-195 (507)
27 PRK14961 DNA polymerase III su 97.9 7.9E-05 1.7E-09 69.3 10.4 122 126-261 42-186 (363)
28 PLN03025 replication factor C 97.9 6.5E-05 1.4E-09 68.5 9.6 120 127-261 39-166 (319)
29 PRK14963 DNA polymerase III su 97.9 4.9E-05 1.1E-09 73.4 9.0 122 126-261 40-183 (504)
30 TIGR02928 orc1/cdc6 family rep 97.9 3.5E-05 7.6E-10 71.4 7.8 70 125-194 43-141 (365)
31 PF00004 AAA: ATPase family as 97.9 3.2E-05 7E-10 60.4 6.2 64 127-195 3-71 (132)
32 PRK14962 DNA polymerase III su 97.9 7.2E-05 1.6E-09 71.7 9.5 120 127-260 41-183 (472)
33 PRK06620 hypothetical protein; 97.9 3.8E-05 8.2E-10 66.0 6.8 102 125-257 47-151 (214)
34 PF05496 RuvB_N: Holliday junc 97.9 3.2E-05 6.9E-10 66.3 6.2 75 126-209 54-128 (233)
35 PRK09087 hypothetical protein; 97.8 6.6E-05 1.4E-09 65.1 7.6 106 125-257 47-157 (226)
36 PRK12402 replication factor C 97.8 9E-05 1.9E-09 67.8 9.0 94 126-231 40-164 (337)
37 PRK14949 DNA polymerase III su 97.8 7.3E-05 1.6E-09 75.6 8.6 119 127-259 43-184 (944)
38 PRK07003 DNA polymerase III su 97.8 0.00012 2.5E-09 73.0 9.6 119 127-259 43-184 (830)
39 PRK12377 putative replication 97.8 9.2E-05 2E-09 65.0 8.1 89 125-230 104-204 (248)
40 PRK14960 DNA polymerase III su 97.8 0.00015 3.3E-09 71.3 9.9 120 127-260 42-184 (702)
41 PRK04841 transcriptional regul 97.8 0.00013 2.8E-09 75.6 9.8 91 125-231 35-161 (903)
42 PRK12422 chromosomal replicati 97.8 0.00016 3.4E-09 68.9 9.6 116 125-257 144-275 (445)
43 TIGR01242 26Sp45 26S proteasom 97.7 4.3E-05 9.3E-10 71.0 5.0 67 125-194 159-227 (364)
44 TIGR00635 ruvB Holliday juncti 97.7 8.9E-05 1.9E-09 67.0 7.0 73 125-206 33-105 (305)
45 PRK14964 DNA polymerase III su 97.7 0.00028 6.1E-09 67.7 10.6 121 127-261 40-183 (491)
46 PRK14955 DNA polymerase III su 97.7 0.00022 4.8E-09 67.1 9.7 119 127-260 43-193 (397)
47 PRK08181 transposase; Validate 97.7 0.00012 2.7E-09 65.0 7.4 90 125-232 109-209 (269)
48 PRK12323 DNA polymerase III su 97.7 0.00016 3.4E-09 71.1 8.7 121 127-261 43-191 (700)
49 PRK14958 DNA polymerase III su 97.6 0.00026 5.7E-09 68.5 9.5 120 127-260 43-185 (509)
50 PRK00080 ruvB Holliday junctio 97.6 0.00019 4.1E-09 65.7 8.0 73 125-206 54-126 (328)
51 PRK07940 DNA polymerase III su 97.6 0.00028 6.1E-09 66.1 9.1 121 126-261 40-184 (394)
52 PRK04195 replication factor C 97.6 0.00041 9E-09 66.9 10.0 113 125-258 42-165 (482)
53 PF00308 Bac_DnaA: Bacterial d 97.6 0.00019 4E-09 62.0 6.8 116 125-257 37-170 (219)
54 PRK14951 DNA polymerase III su 97.6 0.00031 6.8E-09 69.2 9.0 121 127-261 43-191 (618)
55 PRK14969 DNA polymerase III su 97.6 0.00051 1.1E-08 66.9 10.4 120 127-260 43-185 (527)
56 PRK14087 dnaA chromosomal repl 97.6 0.00029 6.3E-09 67.3 8.4 116 125-257 144-279 (450)
57 PRK00149 dnaA chromosomal repl 97.6 0.00031 6.8E-09 67.2 8.6 116 125-257 151-284 (450)
58 PRK06921 hypothetical protein; 97.5 0.00022 4.7E-09 63.4 6.9 92 125-230 120-223 (266)
59 TIGR02903 spore_lon_C ATP-depe 97.5 0.0012 2.7E-08 65.5 12.6 24 124-147 177-200 (615)
60 PRK07994 DNA polymerase III su 97.5 0.00029 6.2E-09 69.7 8.0 119 127-259 43-184 (647)
61 PRK07764 DNA polymerase III su 97.5 0.00035 7.5E-09 71.2 8.9 119 127-260 42-186 (824)
62 PRK08691 DNA polymerase III su 97.5 0.00043 9.3E-09 68.6 9.2 120 127-260 43-185 (709)
63 PRK06526 transposase; Provisio 97.5 0.00021 4.5E-09 63.1 6.5 89 125-231 101-200 (254)
64 PRK00440 rfc replication facto 97.5 0.00091 2E-08 60.6 10.7 119 126-258 42-166 (319)
65 PRK05896 DNA polymerase III su 97.5 0.00074 1.6E-08 66.1 10.5 119 127-260 43-185 (605)
66 PRK08903 DnaA regulatory inact 97.5 0.00015 3.3E-09 62.6 5.1 112 125-257 45-161 (227)
67 PRK14088 dnaA chromosomal repl 97.5 0.00057 1.2E-08 65.1 9.2 116 125-257 133-267 (440)
68 TIGR00362 DnaA chromosomal rep 97.5 0.00041 8.9E-09 65.4 8.2 115 126-257 140-272 (405)
69 PRK08118 topology modulation p 97.5 4.3E-05 9.3E-10 63.1 1.4 62 125-194 4-70 (167)
70 PRK11331 5-methylcytosine-spec 97.5 0.00011 2.3E-09 69.4 4.1 81 126-206 198-297 (459)
71 PHA02544 44 clamp loader, smal 97.5 0.00028 6.1E-09 64.1 6.7 90 127-232 48-141 (316)
72 PRK08939 primosomal protein Dn 97.5 0.00046 9.9E-09 62.6 7.9 88 126-230 160-259 (306)
73 PRK09111 DNA polymerase III su 97.5 0.00063 1.4E-08 67.0 9.5 121 127-261 51-199 (598)
74 PRK09183 transposase/IS protei 97.4 0.00053 1.1E-08 60.7 7.7 21 125-145 105-125 (259)
75 PRK14086 dnaA chromosomal repl 97.4 0.00061 1.3E-08 66.8 8.7 115 126-257 318-450 (617)
76 PRK07952 DNA replication prote 97.4 0.00062 1.3E-08 59.6 7.8 86 126-231 103-204 (244)
77 PRK14954 DNA polymerase III su 97.4 0.0012 2.5E-08 65.4 10.3 120 127-261 43-194 (620)
78 PHA00729 NTP-binding motif con 97.4 0.0013 2.8E-08 56.7 9.4 65 125-191 20-91 (226)
79 PRK14956 DNA polymerase III su 97.4 0.00077 1.7E-08 64.3 8.8 119 126-258 44-185 (484)
80 smart00382 AAA ATPases associa 97.4 0.0013 2.7E-08 51.0 8.8 68 125-195 5-91 (148)
81 PF01695 IstB_IS21: IstB-like 97.4 0.00018 3.8E-09 60.1 4.0 68 125-200 50-126 (178)
82 COG1474 CDC6 Cdc6-related prot 97.4 0.00063 1.4E-08 63.1 8.0 123 125-259 45-196 (366)
83 PRK14959 DNA polymerase III su 97.4 0.0018 3.9E-08 63.7 11.3 118 127-259 43-184 (624)
84 PRK03992 proteasome-activating 97.4 0.00042 9.2E-09 65.0 6.7 62 126-193 169-235 (389)
85 PRK14952 DNA polymerase III su 97.4 0.0016 3.4E-08 64.0 10.7 120 127-261 40-185 (584)
86 TIGR02397 dnaX_nterm DNA polym 97.3 0.0022 4.8E-08 59.1 11.0 118 127-259 41-182 (355)
87 TIGR03689 pup_AAA proteasome A 97.3 0.00059 1.3E-08 65.8 7.3 65 127-193 221-300 (512)
88 PRK06835 DNA replication prote 97.3 0.00082 1.8E-08 61.5 7.8 87 125-231 186-288 (329)
89 PRK14970 DNA polymerase III su 97.3 0.0012 2.6E-08 61.4 8.8 120 127-260 44-174 (367)
90 PRK14953 DNA polymerase III su 97.3 0.0032 6.8E-08 60.8 11.5 121 127-261 43-186 (486)
91 PTZ00112 origin recognition co 97.2 0.0018 3.9E-08 65.5 9.7 68 127-194 786-881 (1164)
92 PF02562 PhoH: PhoH-like prote 97.2 0.00045 9.7E-09 58.8 4.5 94 124-230 21-154 (205)
93 PRK14971 DNA polymerase III su 97.2 0.0022 4.8E-08 63.6 10.0 120 127-261 44-188 (614)
94 PTZ00454 26S protease regulato 97.2 0.00065 1.4E-08 63.8 5.8 62 126-193 183-249 (398)
95 PF04665 Pox_A32: Poxvirus A32 97.2 0.00076 1.6E-08 58.7 5.8 34 125-160 16-49 (241)
96 PRK08451 DNA polymerase III su 97.2 0.0034 7.4E-08 60.9 10.8 120 127-261 41-184 (535)
97 PF07728 AAA_5: AAA domain (dy 97.2 0.00018 4E-09 57.1 1.7 76 127-207 4-90 (139)
98 PF01637 Arch_ATPase: Archaeal 97.1 0.00042 9E-09 59.4 3.8 21 125-145 23-43 (234)
99 PRK14950 DNA polymerase III su 97.1 0.005 1.1E-07 60.9 11.5 117 127-258 43-184 (585)
100 TIGR02881 spore_V_K stage V sp 97.1 0.0015 3.3E-08 57.8 7.2 19 126-144 46-64 (261)
101 PRK05707 DNA polymerase III su 97.1 0.003 6.5E-08 57.9 9.1 121 127-262 27-174 (328)
102 cd01133 F1-ATPase_beta F1 ATP 97.1 0.00094 2E-08 59.3 5.4 49 125-175 72-122 (274)
103 PRK12608 transcription termina 97.1 0.0013 2.9E-08 60.7 6.5 65 126-192 137-230 (380)
104 PRK07471 DNA polymerase III su 97.1 0.0047 1E-07 57.4 10.1 79 170-261 126-208 (365)
105 PF13191 AAA_16: AAA ATPase do 97.1 0.0004 8.6E-09 57.5 2.7 21 125-145 27-47 (185)
106 COG1484 DnaC DNA replication p 97.0 0.0018 3.9E-08 57.1 7.0 67 126-200 109-185 (254)
107 PRK14965 DNA polymerase III su 97.0 0.004 8.6E-08 61.4 10.0 120 127-261 43-186 (576)
108 TIGR02640 gas_vesic_GvpN gas v 97.0 0.002 4.3E-08 57.1 6.9 77 127-208 26-131 (262)
109 PF05673 DUF815: Protein of un 97.0 0.0025 5.5E-08 55.4 7.2 75 127-209 57-134 (249)
110 PRK07261 topology modulation p 97.0 0.0015 3.2E-08 54.1 5.5 65 125-193 3-68 (171)
111 PRK08058 DNA polymerase III su 97.0 0.0037 8.1E-08 57.3 8.7 118 127-258 33-174 (329)
112 PF00910 RNA_helicase: RNA hel 97.0 0.0021 4.6E-08 48.8 5.9 19 127-145 3-21 (107)
113 PRK07133 DNA polymerase III su 96.9 0.0064 1.4E-07 60.9 10.3 120 127-261 45-185 (725)
114 PRK06305 DNA polymerase III su 96.9 0.0066 1.4E-07 58.1 9.7 120 127-261 44-188 (451)
115 PRK10865 protein disaggregatio 96.9 0.012 2.7E-07 60.6 12.2 82 125-209 601-697 (857)
116 PF13177 DNA_pol3_delta2: DNA 96.8 0.0064 1.4E-07 49.8 8.2 95 127-232 24-142 (162)
117 CHL00181 cbbX CbbX; Provisiona 96.8 0.0043 9.4E-08 55.8 7.6 19 126-144 63-81 (287)
118 PRK10536 hypothetical protein; 96.8 0.0053 1.2E-07 53.9 7.9 34 184-230 178-211 (262)
119 cd01120 RecA-like_NTPases RecA 96.8 0.0068 1.5E-07 48.6 8.1 34 126-161 3-36 (165)
120 PTZ00361 26 proteosome regulat 96.8 0.0013 2.9E-08 62.3 4.4 62 126-193 221-287 (438)
121 COG0593 DnaA ATPase involved i 96.8 0.0028 6.2E-08 59.2 6.3 118 125-257 116-248 (408)
122 COG2255 RuvB Holliday junction 96.8 0.0037 8E-08 55.3 6.6 111 123-244 53-174 (332)
123 PF07724 AAA_2: AAA domain (Cd 96.8 0.0013 2.8E-08 54.5 3.6 103 126-230 7-128 (171)
124 PRK08699 DNA polymerase III su 96.8 0.014 3E-07 53.4 10.6 121 127-262 26-181 (325)
125 PRK09112 DNA polymerase III su 96.8 0.0085 1.8E-07 55.4 9.2 78 171-261 127-208 (351)
126 COG4608 AppF ABC-type oligopep 96.8 0.0073 1.6E-07 53.1 8.2 110 125-245 42-183 (268)
127 KOG0726 26S proteasome regulat 96.7 0.0019 4.1E-08 57.3 4.5 160 127-295 224-400 (440)
128 TIGR01241 FtsH_fam ATP-depende 96.7 0.0026 5.6E-08 61.6 5.9 60 126-193 92-158 (495)
129 COG0470 HolB ATPase involved i 96.7 0.0051 1.1E-07 55.7 7.4 96 126-231 28-148 (325)
130 COG0466 Lon ATP-dependent Lon 96.7 0.017 3.7E-07 57.1 11.0 66 125-195 353-430 (782)
131 KOG2543 Origin recognition com 96.7 0.0031 6.6E-08 57.9 5.3 65 125-194 33-127 (438)
132 PRK06647 DNA polymerase III su 96.7 0.015 3.1E-07 57.2 10.5 118 127-259 43-184 (563)
133 COG0542 clpA ATP-binding subun 96.6 0.011 2.4E-07 59.4 9.5 75 127-209 526-620 (786)
134 PF08423 Rad51: Rad51; InterP 96.6 0.0083 1.8E-07 53.0 7.7 69 124-193 40-144 (256)
135 COG1373 Predicted ATPase (AAA+ 96.6 0.0086 1.9E-07 56.4 8.2 114 124-257 39-158 (398)
136 PF12775 AAA_7: P-loop contain 96.5 0.0021 4.5E-08 57.3 3.4 73 126-200 37-118 (272)
137 cd03214 ABC_Iron-Siderophores_ 96.5 0.015 3.2E-07 48.4 8.3 104 124-239 27-165 (180)
138 PRK12727 flagellar biosynthesi 96.5 0.16 3.6E-06 49.2 16.2 22 123-144 351-372 (559)
139 PRK14722 flhF flagellar biosyn 96.5 0.086 1.9E-06 49.1 13.9 22 124-145 139-160 (374)
140 PF05621 TniB: Bacterial TniB 96.5 0.0078 1.7E-07 54.0 6.7 93 83-194 41-157 (302)
141 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0085 1.8E-07 61.9 7.8 103 126-231 599-717 (852)
142 TIGR02880 cbbX_cfxQ probable R 96.4 0.0067 1.4E-07 54.5 5.9 19 126-144 62-80 (284)
143 PF13207 AAA_17: AAA domain; P 96.4 0.0018 3.8E-08 49.9 1.7 21 125-145 2-22 (121)
144 CHL00095 clpC Clp protease ATP 96.3 0.0076 1.6E-07 62.0 6.6 101 127-230 544-660 (821)
145 TIGR03345 VI_ClpV1 type VI sec 96.3 0.013 2.8E-07 60.4 8.1 67 126-194 212-292 (852)
146 KOG0730 AAA+-type ATPase [Post 96.3 0.011 2.3E-07 57.9 6.9 60 126-193 472-538 (693)
147 PRK14948 DNA polymerase III su 96.3 0.034 7.3E-07 55.3 10.6 81 127-208 43-147 (620)
148 TIGR03499 FlhF flagellar biosy 96.3 0.12 2.6E-06 46.3 13.3 23 123-145 195-217 (282)
149 TIGR01243 CDC48 AAA family ATP 96.3 0.011 2.3E-07 60.1 7.2 62 126-193 491-557 (733)
150 cd01393 recA_like RecA is a b 96.3 0.032 6.9E-07 47.9 9.1 44 124-169 21-70 (226)
151 CHL00176 ftsH cell division pr 96.2 0.0045 9.8E-08 61.6 4.2 61 125-193 219-286 (638)
152 PRK06995 flhF flagellar biosyn 96.2 0.43 9.3E-06 46.0 17.3 23 123-145 257-279 (484)
153 PRK05703 flhF flagellar biosyn 96.2 0.46 1E-05 45.1 17.5 21 124-144 223-243 (424)
154 cd03216 ABC_Carb_Monos_I This 96.2 0.018 3.9E-07 47.1 7.0 100 125-238 29-148 (163)
155 cd03222 ABC_RNaseL_inhibitor T 96.2 0.072 1.6E-06 44.3 10.6 102 124-238 27-138 (177)
156 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.017 3.7E-07 49.9 7.2 45 125-169 22-70 (235)
157 TIGR02639 ClpA ATP-dependent C 96.2 0.021 4.6E-07 58.0 8.7 67 126-193 207-285 (731)
158 COG4618 ArpD ABC-type protease 96.2 0.013 2.9E-07 55.7 6.6 20 125-144 365-384 (580)
159 COG2909 MalT ATP-dependent tra 96.1 0.033 7.1E-07 56.1 9.5 93 126-231 41-169 (894)
160 TIGR02639 ClpA ATP-dependent C 96.1 0.0081 1.8E-07 61.0 5.4 78 126-209 488-580 (731)
161 PLN00020 ribulose bisphosphate 96.1 0.0083 1.8E-07 55.4 4.8 65 124-193 150-223 (413)
162 PRK14721 flhF flagellar biosyn 96.1 0.66 1.4E-05 44.0 17.6 22 123-144 192-213 (420)
163 KOG0989 Replication factor C, 96.1 0.013 2.9E-07 52.3 5.8 83 127-209 62-156 (346)
164 KOG1969 DNA replication checkp 96.1 0.015 3.3E-07 57.4 6.8 76 127-207 331-412 (877)
165 COG2607 Predicted ATPase (AAA+ 96.0 0.021 4.6E-07 49.4 6.6 78 126-209 89-167 (287)
166 COG1222 RPT1 ATP-dependent 26S 96.0 0.0029 6.2E-08 57.6 1.5 154 127-294 190-365 (406)
167 PRK04132 replication factor C 96.0 0.044 9.5E-07 56.1 10.0 115 130-259 574-695 (846)
168 cd01135 V_A-ATPase_B V/A-type 96.0 0.017 3.8E-07 51.2 6.3 70 125-194 72-178 (276)
169 COG1124 DppF ABC-type dipeptid 96.0 0.067 1.4E-06 46.4 9.6 56 181-244 158-214 (252)
170 PRK13695 putative NTPase; Prov 96.0 0.0064 1.4E-07 50.2 3.4 21 125-145 3-23 (174)
171 CHL00195 ycf46 Ycf46; Provisio 95.9 0.031 6.7E-07 53.9 8.2 62 126-193 263-329 (489)
172 PRK10865 protein disaggregatio 95.9 0.025 5.4E-07 58.4 8.0 67 126-194 203-283 (857)
173 PRK05563 DNA polymerase III su 95.9 0.066 1.4E-06 52.7 10.7 80 127-208 43-145 (559)
174 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.077 1.7E-06 42.4 9.3 97 125-238 29-133 (144)
175 PRK06002 fliI flagellum-specif 95.9 0.017 3.7E-07 54.8 6.1 21 125-145 168-188 (450)
176 PRK06964 DNA polymerase III su 95.8 0.057 1.2E-06 49.7 9.2 77 172-261 119-199 (342)
177 TIGR03345 VI_ClpV1 type VI sec 95.8 0.0091 2E-07 61.5 4.4 99 126-230 600-717 (852)
178 PRK07399 DNA polymerase III su 95.8 0.074 1.6E-06 48.4 9.8 78 170-261 109-190 (314)
179 cd00267 ABC_ATPase ABC (ATP-bi 95.8 0.074 1.6E-06 43.0 8.9 101 124-238 27-146 (157)
180 PRK11034 clpA ATP-dependent Cl 95.8 0.01 2.3E-07 60.1 4.6 78 126-209 492-584 (758)
181 PF13238 AAA_18: AAA domain; P 95.8 0.0048 1E-07 47.7 1.7 20 126-145 2-21 (129)
182 PRK12597 F0F1 ATP synthase sub 95.8 0.017 3.6E-07 55.2 5.5 67 125-192 146-247 (461)
183 TIGR02238 recomb_DMC1 meiotic 95.8 0.046 9.9E-07 49.8 8.2 47 124-170 98-148 (313)
184 PRK06090 DNA polymerase III su 95.8 0.067 1.5E-06 48.8 9.2 121 127-262 30-176 (319)
185 cd03247 ABCC_cytochrome_bd The 95.8 0.039 8.5E-07 45.7 7.1 21 125-145 31-51 (178)
186 KOG0735 AAA+-type ATPase [Post 95.7 0.014 3E-07 57.7 4.8 66 127-193 436-505 (952)
187 COG1875 NYN ribonuclease and A 95.7 0.017 3.6E-07 52.9 5.1 36 182-230 351-386 (436)
188 PRK10787 DNA-binding ATP-depen 95.7 0.055 1.2E-06 55.3 9.4 21 124-144 351-371 (784)
189 cd03269 ABC_putative_ATPase Th 95.7 0.12 2.6E-06 43.8 10.3 21 125-145 29-49 (210)
190 cd03235 ABC_Metallic_Cations A 95.7 0.093 2E-06 44.7 9.5 22 124-145 27-48 (213)
191 cd01131 PilT Pilus retraction 95.7 0.02 4.4E-07 48.5 5.3 20 125-144 4-23 (198)
192 PF13604 AAA_30: AAA domain; P 95.7 0.024 5.1E-07 48.0 5.6 85 126-229 22-128 (196)
193 PF00006 ATP-synt_ab: ATP synt 95.7 0.02 4.3E-07 49.2 5.2 64 125-192 18-115 (215)
194 PTZ00202 tuzin; Provisional 95.7 0.031 6.8E-07 52.8 6.8 48 124-179 288-335 (550)
195 PHA02774 E1; Provisional 95.7 0.032 7E-07 54.3 7.0 88 125-230 437-531 (613)
196 PRK00771 signal recognition pa 95.6 0.81 1.8E-05 43.6 16.3 23 123-145 96-118 (437)
197 PHA02244 ATPase-like protein 95.6 0.026 5.5E-07 52.3 6.0 95 126-230 123-229 (383)
198 PF14532 Sigma54_activ_2: Sigm 95.6 0.016 3.4E-07 46.0 4.0 83 126-230 25-108 (138)
199 PRK06871 DNA polymerase III su 95.6 0.064 1.4E-06 49.0 8.4 120 127-261 29-174 (325)
200 TIGR03305 alt_F1F0_F1_bet alte 95.6 0.024 5.2E-07 53.8 5.7 68 125-193 141-243 (449)
201 cd03230 ABC_DR_subfamily_A Thi 95.6 0.041 9E-07 45.3 6.5 21 125-145 29-49 (173)
202 cd03238 ABC_UvrA The excision 95.6 0.071 1.5E-06 44.3 7.9 21 124-144 23-43 (176)
203 cd03263 ABC_subfamily_A The AB 95.5 0.049 1.1E-06 46.6 7.1 49 181-239 150-199 (220)
204 PRK14723 flhF flagellar biosyn 95.5 1.1 2.3E-05 45.6 17.3 23 123-145 186-208 (767)
205 PRK05342 clpX ATP-dependent pr 95.5 0.044 9.6E-07 51.8 7.3 69 125-195 111-186 (412)
206 cd03229 ABC_Class3 This class 95.5 0.041 8.8E-07 45.6 6.4 22 124-145 28-49 (178)
207 cd01136 ATPase_flagellum-secre 95.5 0.039 8.5E-07 50.4 6.7 21 125-145 72-92 (326)
208 PLN03187 meiotic recombination 95.5 0.032 7E-07 51.3 6.1 53 125-178 129-185 (344)
209 PRK08769 DNA polymerase III su 95.4 0.093 2E-06 47.9 8.9 122 127-263 31-182 (319)
210 PRK10867 signal recognition pa 95.4 0.5 1.1E-05 45.0 14.1 22 123-144 101-122 (433)
211 TIGR03522 GldA_ABC_ATP gliding 95.4 0.047 1E-06 49.3 7.0 50 181-240 150-200 (301)
212 PRK08927 fliI flagellum-specif 95.4 0.034 7.4E-07 52.7 6.1 20 126-145 162-181 (442)
213 PRK08972 fliI flagellum-specif 95.4 0.027 5.8E-07 53.4 5.4 64 126-193 166-263 (444)
214 cd03268 ABC_BcrA_bacitracin_re 95.4 0.057 1.2E-06 45.8 7.1 21 125-145 29-49 (208)
215 TIGR01188 drrA daunorubicin re 95.4 0.053 1.1E-06 49.0 7.2 51 181-240 141-192 (302)
216 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.16 3.4E-06 44.5 10.0 22 124-145 27-48 (246)
217 TIGR03346 chaperone_ClpB ATP-d 95.4 0.042 9E-07 56.8 7.2 67 126-194 198-278 (852)
218 COG0541 Ffh Signal recognition 95.4 2.5 5.5E-05 39.9 18.5 143 22-180 9-157 (451)
219 cd01132 F1_ATPase_alpha F1 ATP 95.3 0.029 6.3E-07 49.8 5.1 75 125-204 72-182 (274)
220 TIGR02858 spore_III_AA stage I 95.3 0.078 1.7E-06 47.2 7.9 21 125-145 114-134 (270)
221 PRK09280 F0F1 ATP synthase sub 95.3 0.033 7.2E-07 53.1 5.8 68 125-193 147-249 (463)
222 cd03283 ABC_MutS-like MutS-lik 95.3 0.18 3.9E-06 42.7 9.8 105 124-238 27-154 (199)
223 PRK11248 tauB taurine transpor 95.3 0.23 4.9E-06 43.7 10.8 22 124-145 29-50 (255)
224 PTZ00185 ATPase alpha subunit; 95.3 0.049 1.1E-06 52.4 6.8 69 126-194 193-301 (574)
225 COG1618 Predicted nucleotide k 95.3 0.012 2.5E-07 47.9 2.2 21 125-145 8-28 (179)
226 cd03226 ABC_cobalt_CbiO_domain 95.3 0.11 2.4E-06 44.0 8.4 22 124-145 28-49 (205)
227 PRK08149 ATP synthase SpaL; Va 95.3 0.044 9.4E-07 51.9 6.3 21 125-145 154-174 (428)
228 cd03215 ABC_Carb_Monos_II This 95.2 0.15 3.2E-06 42.4 8.9 50 181-239 121-171 (182)
229 TIGR03498 FliI_clade3 flagella 95.2 0.031 6.7E-07 52.8 5.3 21 125-145 143-163 (418)
230 TIGR01243 CDC48 AAA family ATP 95.2 0.037 7.9E-07 56.4 6.2 62 126-193 216-282 (733)
231 TIGR01425 SRP54_euk signal rec 95.2 0.37 8.1E-06 45.7 12.4 22 123-144 101-122 (429)
232 PF12780 AAA_8: P-loop contain 95.2 0.032 6.9E-07 49.6 5.0 76 127-208 36-115 (268)
233 PRK05922 type III secretion sy 95.2 0.052 1.1E-06 51.4 6.6 21 125-145 160-180 (434)
234 PRK03839 putative kinase; Prov 95.2 0.01 2.3E-07 49.2 1.8 21 125-145 3-23 (180)
235 PLN03186 DNA repair protein RA 95.1 0.043 9.2E-07 50.6 5.7 54 124-178 125-182 (342)
236 cd03228 ABCC_MRP_Like The MRP 95.1 0.18 3.8E-06 41.5 8.9 21 125-145 31-51 (171)
237 PF13671 AAA_33: AAA domain; P 95.1 0.012 2.7E-07 46.5 1.9 19 126-144 3-21 (143)
238 PRK09099 type III secretion sy 95.1 0.042 9.1E-07 52.2 5.7 20 126-145 167-186 (441)
239 KOG0991 Replication factor C, 95.1 0.046 1E-06 47.2 5.4 81 127-207 53-138 (333)
240 CHL00095 clpC Clp protease ATP 95.1 0.054 1.2E-06 55.8 7.0 67 126-193 204-282 (821)
241 TIGR02237 recomb_radB DNA repa 95.1 0.029 6.2E-07 47.7 4.2 42 124-168 14-55 (209)
242 PRK11247 ssuB aliphatic sulfon 95.1 0.15 3.2E-06 45.0 8.8 22 124-145 40-61 (257)
243 PRK05541 adenylylsulfate kinas 95.0 0.016 3.4E-07 47.9 2.5 33 124-158 9-41 (176)
244 cd03264 ABC_drug_resistance_li 95.0 0.11 2.4E-06 44.2 7.7 22 124-145 27-48 (211)
245 PRK13543 cytochrome c biogenes 95.0 0.16 3.4E-06 43.4 8.7 21 125-145 40-60 (214)
246 KOG0738 AAA+-type ATPase [Post 95.0 0.1 2.2E-06 48.3 7.6 157 127-294 250-425 (491)
247 PRK13537 nodulation ABC transp 95.0 0.072 1.6E-06 48.3 6.8 51 181-240 155-206 (306)
248 cd03282 ABC_MSH4_euk MutS4 hom 95.0 0.099 2.1E-06 44.5 7.3 21 124-144 31-51 (204)
249 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.0 0.26 5.6E-06 42.5 10.0 22 124-145 50-71 (224)
250 PRK05973 replicative DNA helic 95.0 0.2 4.4E-06 43.6 9.3 20 126-145 68-87 (237)
251 cd03266 ABC_NatA_sodium_export 95.0 0.079 1.7E-06 45.2 6.7 21 125-145 34-54 (218)
252 cd03236 ABC_RNaseL_inhibitor_d 95.0 0.23 5E-06 43.8 9.8 22 124-145 28-49 (255)
253 PRK00625 shikimate kinase; Pro 95.0 0.013 2.9E-07 48.6 1.8 21 125-145 3-23 (173)
254 PRK15177 Vi polysaccharide exp 95.0 0.24 5.1E-06 42.4 9.6 22 124-145 15-36 (213)
255 cd04159 Arl10_like Arl10-like 95.0 0.065 1.4E-06 42.3 5.8 21 125-145 2-22 (159)
256 COG1131 CcmA ABC-type multidru 95.0 0.099 2.1E-06 47.1 7.6 22 124-145 33-54 (293)
257 KOG0727 26S proteasome regulat 95.0 0.021 4.5E-07 49.9 2.9 59 127-193 194-259 (408)
258 cd03246 ABCC_Protease_Secretio 95.0 0.14 3.1E-06 42.1 7.9 21 125-145 31-51 (173)
259 PRK06936 type III secretion sy 94.9 0.057 1.2E-06 51.2 6.1 64 126-193 166-263 (439)
260 TIGR03740 galliderm_ABC gallid 94.9 0.35 7.6E-06 41.4 10.7 50 181-239 141-191 (223)
261 TIGR01040 V-ATPase_V1_B V-type 94.9 0.055 1.2E-06 51.4 5.9 69 125-193 144-258 (466)
262 PRK05688 fliI flagellum-specif 94.9 0.058 1.2E-06 51.3 6.0 21 125-145 171-191 (451)
263 PRK11034 clpA ATP-dependent Cl 94.9 0.076 1.6E-06 54.0 7.2 67 126-193 211-289 (758)
264 TIGR02239 recomb_RAD51 DNA rep 94.9 0.063 1.4E-06 48.9 6.0 46 123-168 97-146 (316)
265 PRK13647 cbiO cobalt transport 94.8 0.23 4.9E-06 44.3 9.5 51 181-240 155-206 (274)
266 PRK04296 thymidine kinase; Pro 94.8 0.029 6.3E-07 47.2 3.5 19 127-145 7-25 (190)
267 KOG0743 AAA+-type ATPase [Post 94.8 0.061 1.3E-06 50.6 5.9 58 127-193 240-297 (457)
268 cd03281 ABC_MSH5_euk MutS5 hom 94.8 0.12 2.7E-06 44.2 7.4 21 124-144 31-51 (213)
269 TIGR02012 tigrfam_recA protein 94.8 0.036 7.9E-07 50.5 4.3 66 125-193 58-144 (321)
270 COG2884 FtsE Predicted ATPase 94.8 0.1 2.2E-06 43.8 6.5 22 126-147 32-53 (223)
271 PRK09544 znuC high-affinity zi 94.8 0.25 5.5E-06 43.4 9.6 22 124-145 32-53 (251)
272 PRK14974 cell division protein 94.8 2.7 5.9E-05 38.6 16.5 22 123-144 141-162 (336)
273 PF00158 Sigma54_activat: Sigm 94.8 0.23 5E-06 40.9 8.7 98 126-230 26-142 (168)
274 TIGR01041 ATP_syn_B_arch ATP s 94.8 0.051 1.1E-06 51.9 5.4 69 125-193 144-249 (458)
275 PF00485 PRK: Phosphoribulokin 94.8 0.016 3.4E-07 48.9 1.7 20 125-144 2-21 (194)
276 KOG0741 AAA+-type ATPase [Post 94.8 0.05 1.1E-06 52.2 5.2 74 127-207 543-621 (744)
277 KOG2004 Mitochondrial ATP-depe 94.8 0.38 8.3E-06 47.9 11.3 65 125-194 441-517 (906)
278 PRK08233 hypothetical protein; 94.7 0.016 3.6E-07 47.8 1.8 22 124-145 5-26 (182)
279 TIGR02546 III_secr_ATP type II 94.7 0.084 1.8E-06 50.1 6.7 21 125-145 148-168 (422)
280 cd03213 ABCG_EPDR ABCG transpo 94.7 0.17 3.7E-06 42.5 8.0 21 125-145 38-58 (194)
281 PRK09493 glnQ glutamine ABC tr 94.7 0.11 2.3E-06 45.2 6.9 22 124-145 29-50 (240)
282 TIGR01039 atpD ATP synthase, F 94.7 0.068 1.5E-06 50.9 5.9 68 125-193 146-248 (461)
283 PRK13545 tagH teichoic acids e 94.7 0.27 5.9E-06 47.8 10.0 22 124-145 52-73 (549)
284 PRK12678 transcription termina 94.7 0.067 1.5E-06 52.2 5.9 67 126-193 420-514 (672)
285 cd00983 recA RecA is a bacter 94.6 0.038 8.2E-07 50.4 4.0 66 125-193 58-144 (325)
286 PRK07993 DNA polymerase III su 94.6 0.24 5.3E-06 45.5 9.4 121 127-262 29-176 (334)
287 cd03227 ABC_Class2 ABC-type Cl 94.6 0.3 6.6E-06 39.8 9.1 104 124-236 23-145 (162)
288 PF07693 KAP_NTPase: KAP famil 94.6 0.2 4.4E-06 45.3 8.9 22 124-145 22-43 (325)
289 PRK07594 type III secretion sy 94.6 0.062 1.3E-06 51.0 5.5 21 125-145 158-178 (433)
290 COG4133 CcmA ABC-type transpor 94.6 0.27 5.9E-06 41.1 8.6 20 125-144 31-50 (209)
291 PRK05480 uridine/cytidine kina 94.6 0.018 3.9E-07 49.0 1.7 23 123-145 7-29 (209)
292 TIGR00763 lon ATP-dependent pr 94.6 1 2.2E-05 46.2 14.6 21 125-145 350-370 (775)
293 PRK09354 recA recombinase A; P 94.6 0.048 1E-06 50.2 4.5 66 125-193 63-149 (349)
294 TIGR02868 CydC thiol reductant 94.5 0.15 3.2E-06 49.8 8.2 21 125-145 364-384 (529)
295 TIGR01650 PD_CobS cobaltochela 94.5 0.052 1.1E-06 49.5 4.6 77 126-207 68-159 (327)
296 TIGR00235 udk uridine kinase. 94.5 0.019 4.2E-07 48.8 1.7 22 124-145 8-29 (207)
297 cd03231 ABC_CcmA_heme_exporter 94.5 0.095 2.1E-06 44.3 6.0 22 124-145 28-49 (201)
298 TIGR03496 FliI_clade1 flagella 94.5 0.079 1.7E-06 50.0 5.9 21 125-145 140-160 (411)
299 PRK05917 DNA polymerase III su 94.5 0.23 5E-06 44.6 8.6 94 127-231 24-134 (290)
300 TIGR00959 ffh signal recogniti 94.5 1.2 2.7E-05 42.3 13.9 22 123-144 100-121 (428)
301 COG0714 MoxR-like ATPases [Gen 94.5 0.1 2.2E-06 47.8 6.4 78 126-208 47-138 (329)
302 PF08433 KTI12: Chromatin asso 94.5 0.032 6.9E-07 49.7 3.1 20 126-145 5-24 (270)
303 PRK15439 autoinducer 2 ABC tra 94.5 0.34 7.3E-06 47.2 10.5 21 125-145 40-60 (510)
304 PRK07721 fliI flagellum-specif 94.4 0.089 1.9E-06 50.1 6.1 68 126-193 162-259 (438)
305 PTZ00301 uridine kinase; Provi 94.4 0.029 6.2E-07 48.1 2.6 21 124-144 5-25 (210)
306 PRK06793 fliI flagellum-specif 94.4 0.15 3.2E-06 48.4 7.5 21 125-145 159-179 (432)
307 TIGR01026 fliI_yscN ATPase Fli 94.4 0.085 1.8E-06 50.3 6.0 21 125-145 166-186 (440)
308 COG0468 RecA RecA/RadA recombi 94.4 0.056 1.2E-06 48.2 4.4 45 124-170 62-106 (279)
309 TIGR02314 ABC_MetN D-methionin 94.4 0.16 3.5E-06 46.9 7.5 52 181-240 157-209 (343)
310 KOG0729 26S proteasome regulat 94.4 0.024 5.2E-07 49.8 2.0 64 127-193 216-281 (435)
311 PRK06762 hypothetical protein; 94.4 0.023 4.9E-07 46.4 1.8 21 125-145 5-25 (166)
312 KOG0733 Nuclear AAA ATPase (VC 94.3 0.056 1.2E-06 52.7 4.5 65 127-194 228-294 (802)
313 PF07726 AAA_3: ATPase family 94.3 0.014 3.1E-07 45.7 0.5 64 127-195 4-75 (131)
314 PRK13536 nodulation factor exp 94.3 0.11 2.4E-06 47.8 6.4 51 181-240 189-240 (340)
315 PRK15064 ABC transporter ATP-b 94.3 0.36 7.7E-06 47.2 10.2 22 124-145 29-50 (530)
316 PRK12723 flagellar biosynthesi 94.3 4.8 0.00011 37.8 18.4 22 124-145 176-197 (388)
317 COG1135 AbcC ABC-type metal io 94.2 0.2 4.4E-06 45.1 7.5 56 181-244 158-214 (339)
318 PRK13947 shikimate kinase; Pro 94.2 0.025 5.4E-07 46.3 1.8 21 125-145 4-24 (171)
319 cd01134 V_A-ATPase_A V/A-type 94.2 0.15 3.2E-06 47.0 6.8 44 126-173 161-205 (369)
320 PTZ00035 Rad51 protein; Provis 94.2 0.14 3E-06 47.2 6.7 44 125-168 121-168 (337)
321 PRK06820 type III secretion sy 94.2 0.1 2.2E-06 49.7 5.9 21 125-145 166-186 (440)
322 CHL00059 atpA ATP synthase CF1 94.2 0.083 1.8E-06 50.6 5.4 65 126-194 145-245 (485)
323 COG0464 SpoVK ATPases of the A 94.2 0.039 8.4E-07 53.5 3.2 65 126-193 280-346 (494)
324 cd02023 UMPK Uridine monophosp 94.2 0.026 5.6E-07 47.6 1.8 21 125-145 2-22 (198)
325 TIGR03497 FliI_clade2 flagella 94.2 0.097 2.1E-06 49.5 5.7 69 125-193 140-238 (413)
326 PRK00131 aroK shikimate kinase 94.2 0.026 5.7E-07 46.0 1.8 21 125-145 7-27 (175)
327 KOG0927 Predicted transporter 94.2 0.25 5.3E-06 47.7 8.3 48 181-241 238-288 (614)
328 COG1126 GlnQ ABC-type polar am 94.2 0.34 7.5E-06 41.5 8.4 33 123-158 29-61 (240)
329 KOG0744 AAA+-type ATPase [Post 94.1 0.11 2.4E-06 47.1 5.6 66 127-192 182-260 (423)
330 cd02021 GntK Gluconate kinase 94.1 0.029 6.2E-07 45.0 1.8 20 126-145 3-22 (150)
331 COG0396 sufC Cysteine desulfur 94.1 0.35 7.6E-06 41.8 8.4 22 126-147 34-55 (251)
332 PRK07196 fliI flagellum-specif 94.1 0.09 1.9E-06 49.9 5.4 21 125-145 158-178 (434)
333 COG0467 RAD55 RecA-superfamily 94.1 0.094 2E-06 46.3 5.3 64 125-193 26-94 (260)
334 PRK04040 adenylate kinase; Pro 94.1 0.027 5.8E-07 47.4 1.7 21 124-144 4-24 (188)
335 PRK04196 V-type ATP synthase s 94.1 0.081 1.8E-06 50.6 5.1 68 125-193 146-251 (460)
336 KOG0737 AAA+-type ATPase [Post 94.1 0.17 3.6E-06 46.5 6.8 118 125-252 130-262 (386)
337 COG1122 CbiO ABC-type cobalt t 94.1 0.24 5.3E-06 43.1 7.7 21 124-144 32-52 (235)
338 PRK13949 shikimate kinase; Pro 94.1 0.029 6.3E-07 46.3 1.8 21 125-145 4-24 (169)
339 cd02019 NK Nucleoside/nucleoti 94.1 0.032 7E-07 38.7 1.8 20 126-145 3-22 (69)
340 TIGR00602 rad24 checkpoint pro 94.0 0.12 2.5E-06 51.6 6.2 21 125-145 113-133 (637)
341 TIGR01359 UMP_CMP_kin_fam UMP- 94.0 0.029 6.3E-07 46.5 1.8 20 126-145 3-22 (183)
342 PRK13546 teichoic acids export 94.0 0.53 1.1E-05 41.7 9.9 22 124-145 52-73 (264)
343 TIGR03324 alt_F1F0_F1_al alter 94.0 0.11 2.3E-06 50.1 5.7 65 126-194 166-266 (497)
344 PRK06217 hypothetical protein; 94.0 0.03 6.6E-07 46.6 1.8 34 125-159 4-39 (183)
345 cd01878 HflX HflX subfamily. 94.0 0.065 1.4E-06 45.1 3.9 52 83-146 14-65 (204)
346 PRK09281 F0F1 ATP synthase sub 94.0 0.085 1.8E-06 51.0 5.0 65 126-194 166-266 (502)
347 cd03217 ABC_FeS_Assembly ABC-t 93.9 0.22 4.8E-06 42.0 7.0 22 124-145 28-49 (200)
348 TIGR01360 aden_kin_iso1 adenyl 93.9 0.032 6.9E-07 46.3 1.8 21 124-144 5-25 (188)
349 TIGR01288 nodI ATP-binding ABC 93.9 0.16 3.5E-06 45.9 6.6 22 124-145 32-53 (303)
350 TIGR00382 clpX endopeptidase C 93.9 0.11 2.5E-06 48.9 5.6 68 125-194 119-193 (413)
351 PRK13531 regulatory ATPase Rav 93.9 0.07 1.5E-06 51.2 4.2 76 127-207 44-132 (498)
352 COG0563 Adk Adenylate kinase a 93.9 0.033 7.1E-07 46.4 1.8 20 126-145 4-23 (178)
353 cd02025 PanK Pantothenate kina 93.8 0.032 7E-07 48.1 1.8 21 125-145 2-22 (220)
354 PF03029 ATP_bind_1: Conserved 93.8 0.033 7.1E-07 48.7 1.8 21 127-147 1-21 (238)
355 cd00464 SK Shikimate kinase (S 93.8 0.034 7.4E-07 44.5 1.8 20 126-145 3-22 (154)
356 PRK10938 putative molybdenum t 93.8 0.4 8.7E-06 46.3 9.5 22 124-145 31-52 (490)
357 smart00487 DEXDc DEAD-like hel 93.8 0.28 6.1E-06 40.0 7.4 21 124-144 26-47 (201)
358 PRK10416 signal recognition pa 93.7 0.92 2E-05 41.4 11.1 23 123-145 115-137 (318)
359 COG2274 SunT ABC-type bacterio 93.7 0.19 4.1E-06 50.8 7.2 20 125-144 502-521 (709)
360 cd01394 radB RadB. The archaea 93.7 0.089 1.9E-06 44.9 4.3 21 125-145 22-42 (218)
361 PF00406 ADK: Adenylate kinase 93.7 0.037 8E-07 44.5 1.8 19 127-145 1-19 (151)
362 COG4152 ABC-type uncharacteriz 93.7 0.29 6.3E-06 42.8 7.2 52 181-241 147-199 (300)
363 cd03243 ABC_MutS_homologs The 93.6 0.26 5.6E-06 41.7 6.9 22 123-144 30-51 (202)
364 PRK06547 hypothetical protein; 93.6 0.037 8.1E-07 45.8 1.7 23 123-145 16-38 (172)
365 PF12061 DUF3542: Protein of u 93.6 0.074 1.6E-06 47.7 3.6 58 4-61 315-373 (402)
366 PRK09361 radB DNA repair and r 93.6 0.092 2E-06 45.1 4.2 40 124-166 25-64 (225)
367 TIGR01313 therm_gnt_kin carboh 93.6 0.04 8.6E-07 44.8 1.8 20 126-145 2-21 (163)
368 TIGR00962 atpA proton transloc 93.6 0.1 2.3E-06 50.4 4.9 65 126-194 165-265 (501)
369 PF00448 SRP54: SRP54-type pro 93.6 0.34 7.3E-06 41.0 7.5 22 124-145 3-24 (196)
370 PRK07960 fliI flagellum-specif 93.6 0.11 2.4E-06 49.4 5.0 20 126-145 179-198 (455)
371 PRK05636 replicative DNA helic 93.6 2.8 6E-05 40.8 14.6 49 126-177 269-317 (505)
372 PF00154 RecA: recA bacterial 93.6 0.12 2.6E-06 47.0 5.0 41 124-166 55-95 (322)
373 COG4555 NatA ABC-type Na+ tran 93.6 0.54 1.2E-05 40.0 8.4 21 124-144 30-50 (245)
374 PRK07132 DNA polymerase III su 93.5 0.62 1.3E-05 42.1 9.5 121 127-261 23-157 (299)
375 TIGR02322 phosphon_PhnN phosph 93.5 0.041 8.9E-07 45.5 1.8 21 125-145 4-24 (179)
376 PF03969 AFG1_ATPase: AFG1-lik 93.5 0.16 3.4E-06 47.2 5.8 90 125-229 65-165 (362)
377 PRK13636 cbiO cobalt transport 93.5 0.29 6.4E-06 43.7 7.4 51 181-239 158-209 (283)
378 PRK14530 adenylate kinase; Pro 93.5 0.041 8.8E-07 47.1 1.8 21 125-145 6-26 (215)
379 PRK13343 F0F1 ATP synthase sub 93.5 0.1 2.2E-06 50.3 4.6 65 126-194 166-266 (502)
380 TIGR02236 recomb_radA DNA repa 93.4 0.13 2.7E-06 46.7 5.0 47 124-170 97-147 (310)
381 TIGR03877 thermo_KaiC_1 KaiC d 93.4 0.34 7.3E-06 42.2 7.4 43 126-172 25-67 (237)
382 KOG0924 mRNA splicing factor A 93.4 0.47 1E-05 47.0 8.9 115 125-253 374-537 (1042)
383 PRK04301 radA DNA repair and r 93.4 0.12 2.6E-06 47.0 4.8 47 124-170 104-154 (317)
384 PRK06696 uridine kinase; Valid 93.3 0.043 9.4E-07 47.3 1.7 23 123-145 23-45 (223)
385 PRK12726 flagellar biosynthesi 93.3 1 2.2E-05 42.2 10.5 23 123-145 207-229 (407)
386 PRK10078 ribose 1,5-bisphospho 93.2 0.05 1.1E-06 45.4 1.9 21 125-145 5-25 (186)
387 cd03280 ABC_MutS2 MutS2 homolo 93.2 0.46 1E-05 40.1 7.8 20 124-143 30-49 (200)
388 PF08477 Miro: Miro-like prote 93.2 0.055 1.2E-06 41.2 2.0 22 126-147 3-24 (119)
389 TIGR03881 KaiC_arch_4 KaiC dom 93.2 0.24 5.3E-06 42.6 6.2 62 125-191 23-89 (229)
390 KOG0731 AAA+-type ATPase conta 93.2 0.3 6.5E-06 49.2 7.5 60 126-193 348-414 (774)
391 cd02020 CMPK Cytidine monophos 93.1 0.052 1.1E-06 42.9 1.8 21 125-145 2-22 (147)
392 PRK14532 adenylate kinase; Pro 93.1 0.051 1.1E-06 45.3 1.8 20 126-145 4-23 (188)
393 cd02024 NRK1 Nicotinamide ribo 93.1 0.052 1.1E-06 45.6 1.8 21 125-145 2-22 (187)
394 PF13086 AAA_11: AAA domain; P 93.1 0.069 1.5E-06 45.4 2.7 51 125-175 20-75 (236)
395 PF01583 APS_kinase: Adenylyls 93.1 0.073 1.6E-06 43.3 2.6 19 127-145 7-25 (156)
396 KOG1514 Origin recognition com 93.1 0.32 7E-06 48.2 7.3 93 127-229 427-546 (767)
397 TIGR03263 guanyl_kin guanylate 93.1 0.056 1.2E-06 44.6 1.9 21 125-145 4-24 (180)
398 KOG0734 AAA+-type ATPase conta 93.0 0.42 9.1E-06 46.2 7.8 94 83-193 308-407 (752)
399 TIGR03375 type_I_sec_LssB type 93.0 0.37 8E-06 48.7 8.0 20 125-144 494-513 (694)
400 PRK13975 thymidylate kinase; P 93.0 0.055 1.2E-06 45.3 1.7 21 125-145 5-25 (196)
401 cd00227 CPT Chloramphenicol (C 92.9 0.058 1.3E-06 44.6 1.8 21 125-145 5-25 (175)
402 smart00534 MUTSac ATPase domai 92.9 1.5 3.3E-05 36.5 10.4 19 126-144 3-21 (185)
403 cd01672 TMPK Thymidine monopho 92.9 0.16 3.4E-06 42.3 4.5 21 125-145 3-23 (200)
404 TIGR00450 mnmE_trmE_thdF tRNA 92.9 0.32 7E-06 46.5 7.0 22 125-146 206-227 (442)
405 cd02028 UMPK_like Uridine mono 92.9 0.057 1.2E-06 45.0 1.7 21 125-145 2-22 (179)
406 COG0703 AroK Shikimate kinase 92.9 0.063 1.4E-06 44.3 1.9 26 125-152 5-30 (172)
407 PRK02118 V-type ATP synthase s 92.9 0.23 5E-06 47.1 5.9 66 125-194 143-243 (436)
408 cd00046 DEXDc DEAD-like helica 92.8 0.39 8.5E-06 36.6 6.4 34 126-159 4-37 (144)
409 TIGR00665 DnaB replicative DNA 92.8 5.2 0.00011 38.0 15.2 47 126-175 199-245 (434)
410 COG4586 ABC-type uncharacteriz 92.8 0.94 2E-05 40.3 9.1 53 181-241 173-226 (325)
411 PRK13409 putative ATPase RIL; 92.8 0.82 1.8E-05 45.4 10.0 21 125-145 368-388 (590)
412 PRK00889 adenylylsulfate kinas 92.8 0.061 1.3E-06 44.3 1.8 22 124-145 6-27 (175)
413 PF03266 NTPase_1: NTPase; In 92.8 0.062 1.3E-06 44.3 1.8 20 126-145 3-22 (168)
414 PRK15429 formate hydrogenlyase 92.8 0.32 6.9E-06 49.2 7.2 80 126-208 403-496 (686)
415 cd01428 ADK Adenylate kinase ( 92.7 0.062 1.4E-06 44.8 1.8 20 126-145 3-22 (194)
416 PRK13894 conjugal transfer ATP 92.7 0.44 9.5E-06 43.5 7.4 71 126-203 152-238 (319)
417 PRK11889 flhF flagellar biosyn 92.7 0.49 1.1E-05 44.4 7.7 22 123-144 242-263 (436)
418 PRK00300 gmk guanylate kinase; 92.7 0.063 1.4E-06 45.4 1.8 21 125-145 8-28 (205)
419 cd03284 ABC_MutS1 MutS1 homolo 92.7 0.46 9.9E-06 40.8 7.1 21 123-143 31-51 (216)
420 PRK13409 putative ATPase RIL; 92.7 0.72 1.6E-05 45.8 9.4 23 123-145 100-122 (590)
421 KOG0056 Heavy metal exporter H 92.7 1 2.3E-05 43.2 9.7 41 181-230 691-732 (790)
422 PRK07667 uridine kinase; Provi 92.6 0.064 1.4E-06 45.2 1.7 22 124-145 19-40 (193)
423 COG3899 Predicted ATPase [Gene 92.6 0.7 1.5E-05 47.9 9.5 22 124-145 26-47 (849)
424 TIGR02528 EutP ethanolamine ut 92.6 0.21 4.6E-06 39.2 4.6 22 125-146 3-24 (142)
425 cd00880 Era_like Era (E. coli 92.6 0.071 1.5E-06 41.8 1.9 19 127-145 1-19 (163)
426 PRK13948 shikimate kinase; Pro 92.6 0.067 1.5E-06 44.7 1.8 22 124-145 12-33 (182)
427 PRK11174 cysteine/glutathione 92.6 0.51 1.1E-05 46.7 8.3 21 125-145 379-399 (588)
428 PRK05057 aroK shikimate kinase 92.6 0.067 1.5E-06 44.2 1.8 21 125-145 7-27 (172)
429 TIGR01069 mutS2 MutS2 family p 92.6 8.2 0.00018 39.7 16.9 22 124-145 324-345 (771)
430 PRK03731 aroL shikimate kinase 92.6 0.069 1.5E-06 43.7 1.8 21 125-145 5-25 (171)
431 TIGR02857 CydD thiol reductant 92.6 0.43 9.3E-06 46.6 7.6 21 125-145 351-371 (529)
432 TIGR03574 selen_PSTK L-seryl-t 92.6 0.066 1.4E-06 46.9 1.8 20 126-145 3-22 (249)
433 TIGR01420 pilT_fam pilus retra 92.5 0.21 4.7E-06 46.0 5.2 19 126-144 126-144 (343)
434 PTZ00088 adenylate kinase 1; P 92.5 0.069 1.5E-06 46.4 1.8 21 125-145 9-29 (229)
435 KOG0740 AAA+-type ATPase [Post 92.5 0.17 3.7E-06 47.7 4.4 64 127-193 191-256 (428)
436 COG0055 AtpD F0F1-type ATP syn 92.5 0.16 3.5E-06 46.8 4.1 69 125-194 150-253 (468)
437 PRK10733 hflB ATP-dependent me 92.5 0.14 3E-06 51.4 4.1 63 125-194 188-256 (644)
438 cd00071 GMPK Guanosine monopho 92.5 0.076 1.6E-06 42.1 1.9 20 126-145 3-22 (137)
439 PRK13657 cyclic beta-1,2-gluca 92.5 0.47 1E-05 47.0 7.9 21 125-145 364-384 (588)
440 PRK11823 DNA repair protein Ra 92.5 0.42 9E-06 45.8 7.2 34 126-161 84-117 (446)
441 cd04115 Rab33B_Rab33A Rab33B/R 92.5 0.52 1.1E-05 38.3 6.9 21 125-145 5-25 (170)
442 PF08303 tRNA_lig_kinase: tRNA 92.5 0.25 5.4E-06 40.4 4.8 53 128-190 5-62 (168)
443 COG1100 GTPase SAR1 and relate 92.5 0.073 1.6E-06 45.2 1.8 23 124-146 7-29 (219)
444 COG0488 Uup ATPase components 92.4 0.99 2.2E-05 44.1 9.8 49 181-241 170-219 (530)
445 TIGR00390 hslU ATP-dependent p 92.4 0.17 3.6E-06 47.8 4.3 50 125-176 50-103 (441)
446 PF01926 MMR_HSR1: 50S ribosom 92.4 0.08 1.7E-06 40.3 1.9 21 125-145 2-22 (116)
447 TIGR01192 chvA glucan exporter 92.4 0.54 1.2E-05 46.6 8.1 21 125-145 364-384 (585)
448 TIGR01817 nifA Nif-specific re 92.4 0.41 8.9E-06 46.9 7.2 78 126-208 223-316 (534)
449 PRK13946 shikimate kinase; Pro 92.4 0.078 1.7E-06 44.2 1.9 22 124-145 12-33 (184)
450 PRK06851 hypothetical protein; 92.4 2 4.4E-05 39.9 11.3 41 125-166 217-257 (367)
451 PRK12724 flagellar biosynthesi 92.3 0.29 6.2E-06 46.3 5.8 22 124-145 225-246 (432)
452 PRK11608 pspF phage shock prot 92.3 0.45 9.7E-06 43.6 7.0 79 126-208 33-126 (326)
453 KOG0651 26S proteasome regulat 92.3 0.21 4.5E-06 45.1 4.5 63 125-193 169-236 (388)
454 PRK11650 ugpC glycerol-3-phosp 92.2 0.21 4.6E-06 46.3 4.8 21 125-145 33-53 (356)
455 cd04139 RalA_RalB RalA/RalB su 92.2 0.095 2.1E-06 41.9 2.2 22 125-146 3-24 (164)
456 TIGR02782 TrbB_P P-type conjug 92.2 0.58 1.3E-05 42.3 7.4 19 126-144 136-154 (299)
457 cd02027 APSK Adenosine 5'-phos 92.2 0.084 1.8E-06 42.5 1.8 20 126-145 3-22 (149)
458 COG0194 Gmk Guanylate kinase [ 92.2 2.8 6E-05 35.1 10.7 20 127-146 9-28 (191)
459 PRK04328 hypothetical protein; 92.1 0.23 5E-06 43.6 4.7 60 126-190 27-91 (249)
460 KOG1051 Chaperone HSP104 and r 92.1 0.46 1E-05 48.8 7.3 80 127-209 596-687 (898)
461 KOG0733 Nuclear AAA ATPase (VC 92.1 0.083 1.8E-06 51.5 1.9 59 127-193 550-615 (802)
462 PRK05022 anaerobic nitric oxid 92.1 0.48 1E-05 46.1 7.3 99 126-231 214-331 (509)
463 KOG0739 AAA+-type ATPase [Post 92.1 0.24 5.2E-06 44.4 4.6 59 127-193 171-236 (439)
464 PRK02496 adk adenylate kinase; 92.0 0.087 1.9E-06 43.8 1.8 20 125-144 4-23 (184)
465 PRK03846 adenylylsulfate kinas 92.0 0.084 1.8E-06 44.6 1.7 22 124-145 26-47 (198)
466 KOG0059 Lipid exporter ABCA1 a 92.0 0.44 9.6E-06 49.6 7.3 61 181-254 715-780 (885)
467 cd01122 GP4d_helicase GP4d_hel 92.0 1.3 2.9E-05 38.9 9.5 47 126-175 34-80 (271)
468 PRK09270 nucleoside triphospha 92.0 0.084 1.8E-06 45.7 1.7 23 123-145 34-56 (229)
469 PRK08472 fliI flagellum-specif 92.0 0.33 7.1E-06 46.1 5.8 21 125-145 160-180 (434)
470 TIGR02768 TraA_Ti Ti-type conj 92.0 0.39 8.4E-06 49.0 6.7 21 124-144 370-390 (744)
471 CHL00060 atpB ATP synthase CF1 92.0 0.31 6.7E-06 46.9 5.6 50 125-175 164-214 (494)
472 PF00005 ABC_tran: ABC transpo 92.0 0.09 2E-06 41.2 1.7 22 124-145 13-34 (137)
473 PRK14531 adenylate kinase; Pro 92.0 0.09 1.9E-06 43.8 1.8 21 125-145 5-25 (183)
474 PRK06904 replicative DNA helic 92.0 2.2 4.7E-05 41.2 11.4 49 127-178 226-274 (472)
475 PRK11607 potG putrescine trans 91.9 0.23 5E-06 46.4 4.6 21 125-145 48-68 (377)
476 COG1134 TagH ABC-type polysacc 91.9 1.4 3E-05 38.4 9.0 22 123-144 54-75 (249)
477 cd01124 KaiC KaiC is a circadi 91.8 0.15 3.3E-06 42.1 3.1 19 127-145 4-22 (187)
478 COG0488 Uup ATPase components 91.8 0.3 6.6E-06 47.6 5.5 47 181-239 456-503 (530)
479 TIGR02974 phageshock_pspF psp 91.8 0.61 1.3E-05 42.8 7.2 78 126-208 26-119 (329)
480 COG1936 Predicted nucleotide k 91.8 0.094 2E-06 43.2 1.7 19 125-143 3-21 (180)
481 cd00882 Ras_like_GTPase Ras-li 91.8 0.11 2.3E-06 40.2 2.0 21 127-147 1-21 (157)
482 TIGR00960 3a0501s02 Type II (G 91.8 0.16 3.5E-06 43.3 3.2 22 124-145 31-52 (216)
483 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.8 0.16 3.5E-06 43.3 3.2 22 124-145 32-53 (218)
484 TIGR02673 FtsE cell division A 91.8 0.16 3.6E-06 43.1 3.3 22 124-145 30-51 (214)
485 cd01121 Sms Sms (bacterial rad 91.8 0.27 5.8E-06 45.9 4.9 33 126-160 86-118 (372)
486 COG0125 Tmk Thymidylate kinase 91.8 0.26 5.5E-06 42.1 4.3 46 127-174 8-53 (208)
487 TIGR02688 conserved hypothetic 91.8 0.45 9.7E-06 45.0 6.3 72 127-208 214-286 (449)
488 COG0572 Udk Uridine kinase [Nu 91.7 0.095 2.1E-06 44.9 1.7 23 123-145 9-31 (218)
489 PF13245 AAA_19: Part of AAA d 91.7 0.21 4.7E-06 35.3 3.2 18 127-144 15-33 (76)
490 PF10662 PduV-EutP: Ethanolami 91.7 0.11 2.3E-06 41.7 1.8 22 125-146 4-25 (143)
491 PRK05800 cobU adenosylcobinami 91.7 0.75 1.6E-05 37.9 7.0 21 125-145 4-24 (170)
492 TIGR00554 panK_bact pantothena 91.7 0.095 2.1E-06 47.1 1.7 22 123-144 63-84 (290)
493 PRK09452 potA putrescine/sperm 91.7 0.28 6.1E-06 45.8 4.9 52 181-240 161-213 (375)
494 TIGR02788 VirB11 P-type DNA tr 91.6 1.4 3.1E-05 39.9 9.3 71 125-202 147-236 (308)
495 TIGR02655 circ_KaiC circadian 91.6 0.82 1.8E-05 44.3 8.2 19 126-144 25-43 (484)
496 TIGR01166 cbiO cobalt transpor 91.6 0.18 3.9E-06 42.1 3.2 22 124-145 20-41 (190)
497 PF06745 KaiC: KaiC; InterPro 91.6 0.45 9.8E-06 40.8 5.8 93 126-229 23-123 (226)
498 PF13521 AAA_28: AAA domain; P 91.6 0.086 1.9E-06 42.9 1.3 21 125-145 2-22 (163)
499 TIGR01351 adk adenylate kinase 91.6 0.1 2.2E-06 44.4 1.8 20 126-145 3-22 (210)
500 COG1123 ATPase components of v 91.6 0.79 1.7E-05 44.6 7.9 54 181-242 171-225 (539)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-33 Score=278.17 Aligned_cols=253 Identities=21% Similarity=0.356 Sum_probs=192.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcCCccc------
Q 043781 3 SFFQDFGKQVKKLTSNLRAIQAVLNDAEQRQVKEASVRLWLDQLKEASYDMEDVLDEWITARLKLQIEGVDENA------ 76 (297)
Q Consensus 3 ~ll~~~~~~~~~L~~eL~~i~a~l~~ae~~~~~~~~v~~Wl~~lr~~ayd~eD~ld~~~~~~~~~~~~~~~~~~------ 76 (297)
..+.+.+..+..|+..|..++.++++++.++.....+..|...+++++|++||.++.|..+....+..+.-...
T Consensus 21 ~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 100 (889)
T KOG4658|consen 21 ECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQR 100 (889)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 45678888999999999999999999999999889999999999999999999999999887654322211100
Q ss_pred ----hhccch--hHHHHHHHHHHHHHhhhhcccccc--cCCc--c---cccccccccc--------------------cc
Q 043781 77 ----LVRKKP--KIIEINENLDDIAKQKEVFNFNVI--RGST--E---KSERIHSTAL--------------------IN 123 (297)
Q Consensus 77 ----~~~~~~--~i~~i~~~l~~i~~~~~~~~~~~~--~~~~--~---~~~~~~~~~~--------------------~~ 123 (297)
...++. .+..+.+++..+.+..+.++.... .++. . .....+..+. ..
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~ 180 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVG 180 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCC
Confidence 111221 556667777777777666653321 0110 0 0000000000 12
Q ss_pred cccccccCCcchHHHHHHHhcccc-cccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------------------C
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKD-VIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------------------E 181 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------------------~ 181 (297)
.++|+||||+||||||+.++|+.. ++++||.++||+||+.|+...++++|+..++.. +
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~ 260 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEG 260 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhcc
Confidence 457999999999999999999988 999999999999999999999999999988763 9
Q ss_pred ceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCCccccCCcc---chhh
Q 043781 182 KKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLRAKFPVSIF---DAKK 257 (297)
Q Consensus 182 kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~~~~~l~~l---~~~~ 257 (297)
|||||||||||+. .+|+.|..++|.. .+||+|++|||+ ..||.. |++...+++..| ++|+
T Consensus 261 krfllvLDDIW~~--~dw~~I~~~~p~~----------~~g~KvvlTTRs----~~V~~~~m~~~~~~~v~~L~~~eaW~ 324 (889)
T KOG4658|consen 261 KRFLLVLDDIWEE--VDWDKIGVPFPSR----------ENGSKVVLTTRS----EEVCGRAMGVDYPIEVECLTPEEAWD 324 (889)
T ss_pred CceEEEEeccccc--ccHHhcCCCCCCc----------cCCeEEEEEecc----HhhhhccccCCccccccccCccccHH
Confidence 9999999999999 5799999999984 789999999994 556655 676655555555 6777
Q ss_pred hhhhhhccCCCCCC
Q 043781 258 IWGWEVFGRNTSTR 271 (297)
Q Consensus 258 lf~~~~f~~~~~~~ 271 (297)
||.+.+|....+..
T Consensus 325 LF~~~v~~~~~~~~ 338 (889)
T KOG4658|consen 325 LFQKKVGPNTLGSH 338 (889)
T ss_pred HHHHhhcccccccc
Confidence 77777777655443
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.85 E-value=4.5e-22 Score=178.26 Aligned_cols=130 Identities=26% Similarity=0.408 Sum_probs=95.5
Q ss_pred cccccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------------------
Q 043781 122 INVSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS--------------------- 180 (297)
Q Consensus 122 ~~~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~--------------------- 180 (297)
...+.|+||||+||||||..++++..++++|+.++|+.++...+..+++..|+.+++..
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 45567999999999999999999877999999999999999999999999999988554
Q ss_pred -CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-CccccCCccc---h
Q 043781 181 -EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAKFPVSIFD---A 255 (297)
Q Consensus 181 -~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~~~l~~l~---~ 255 (297)
++++||||||||+. ..|+.+...++.. +.||+||||||...+ +..++. ...+.|+.|+ +
T Consensus 99 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~----------~~~~kilvTTR~~~v----~~~~~~~~~~~~l~~L~~~ea 162 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDE--EDLEELREPLPSF----------SSGSKILVTTRDRSV----AGSLGGTDKVIELEPLSEEEA 162 (287)
T ss_dssp CCTSEEEEEEEE-SH--HHH-------HCH----------HSS-EEEEEESCGGG----GTTHHSCEEEEECSS--HHHH
T ss_pred ccccceeeeeeeccc--ccccccccccccc----------ccccccccccccccc----ccccccccccccccccccccc
Confidence 77999999999998 6898888888764 678999999996544 333332 3566666665 6
Q ss_pred hhhhhhhhccCC
Q 043781 256 KKIWGWEVFGRN 267 (297)
Q Consensus 256 ~~lf~~~~f~~~ 267 (297)
.+||...++...
T Consensus 163 ~~L~~~~~~~~~ 174 (287)
T PF00931_consen 163 LELFKKRAGRKE 174 (287)
T ss_dssp HHHHHHHHTSHS
T ss_pred cccccccccccc
Confidence 677777776655
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=8.8e-18 Score=176.04 Aligned_cols=130 Identities=16% Similarity=0.369 Sum_probs=94.1
Q ss_pred cccccccccCCcchHHHHHHHhcccccccCCCceEEEEe---CCC-----------CC-HHHHHHHHHHhhcC----C--
Q 043781 122 INVSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV---SDP-----------FD-EFRIAKAIIEGLEG----S-- 180 (297)
Q Consensus 122 ~~~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~-~~~~~~~i~~~~~~----~-- 180 (297)
...++||||||+||||||+.+|+ ++..+|+..+|+.. +.. ++ ...++++++.++.. .
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~ 284 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY 284 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC
Confidence 45678999999999999999999 68889999888742 111 11 12233333333211 1
Q ss_pred ----------CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCCCccccC
Q 043781 181 ----------EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGLRAKFPV 250 (297)
Q Consensus 181 ----------~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~~~~~~l 250 (297)
++|+||||||||+. .+|+.+...... .++||+||||||+ .+++..+++.++|.+
T Consensus 285 ~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~----------~~~GsrIIiTTrd----~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 285 HLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQW----------FGSGSRIIVITKD----KHFLRAHGIDHIYEV 348 (1153)
T ss_pred CHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCcc----------CCCCcEEEEEeCc----HHHHHhcCCCeEEEe
Confidence 79999999999987 688888765433 2789999999994 556666677777887
Q ss_pred Cccc---hhhhhhhhhccCCCC
Q 043781 251 SIFD---AKKIWGWEVFGRNTS 269 (297)
Q Consensus 251 ~~l~---~~~lf~~~~f~~~~~ 269 (297)
..++ +++||+++||++..+
T Consensus 349 ~~l~~~ea~~LF~~~Af~~~~~ 370 (1153)
T PLN03210 349 CLPSNELALEMFCRSAFKKNSP 370 (1153)
T ss_pred cCCCHHHHHHHHHHHhcCCCCC
Confidence 7774 778899999986543
No 4
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.81 E-value=4.8e-09 Score=95.56 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=75.6
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFH 203 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~ 203 (297)
-.=+||++|+||||||+.+.. ....+|...- -..+..-++..++.+--..... +++.+|++|.|..-+..+-+.+.
T Consensus 50 SmIl~GPPG~GKTTlA~liA~--~~~~~f~~~s-Av~~gvkdlr~i~e~a~~~~~~-gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAG--TTNAAFEALS-AVTSGVKDLREIIEEARKNRLL-GRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHH--hhCCceEEec-cccccHHHHHHHHHHHHHHHhc-CCceEEEEehhhhcChhhhhhhh
Confidence 344799999999999999999 4555552211 1112222333333332222222 89999999999988766777765
Q ss_pred HHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-CccccCCccchhhh
Q 043781 204 NCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAKFPVSIFDAKKI 258 (297)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~~~l~~l~~~~l 258 (297)
+.+ .+|.-|+|-+.+++....+...+-. ..++.|++|+++++
T Consensus 126 p~v-------------E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di 168 (436)
T COG2256 126 PHV-------------ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDI 168 (436)
T ss_pred hhh-------------cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHH
Confidence 555 7888888866555555454433222 37889999987764
No 5
>PF05729 NACHT: NACHT domain
Probab=98.71 E-value=7e-08 Score=78.65 Aligned_cols=122 Identities=20% Similarity=0.172 Sum_probs=71.6
Q ss_pred cccccCCcchHHHHHHHhcccccccC----CCceEEEEeCCCCCHH---HHHHHHHHhhcCC--------------CceE
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIEN----FDKRIWVCVSDPFDEF---RIAKAIIEGLEGS--------------EKKF 184 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~~~~~--------------~kr~ 184 (297)
-|.|.+|+||||+++.++..-..... +...+|++........ .+...|..+.... .+++
T Consensus 4 ~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
T PF05729_consen 4 WISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKRV 83 (166)
T ss_pred EEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCce
Confidence 47899999999999999885333222 3456677654433221 2333333332221 8899
Q ss_pred EEEEeCCCCCCcc--C-----HHH-HHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCCCccccCCccchh
Q 043781 185 FLILDDVWTDDYS--K-----WEP-FHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGLRAKFPVSIFDAK 256 (297)
Q Consensus 185 LiVlDdv~~~~~~--~-----w~~-l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~~~~~~l~~l~~~ 256 (297)
|||||++.+.... . +.. +...++.. ..++.++|||+|.... ..+.........+.+.+++..
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~liit~r~~~~-~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQA---------LPPGVKLIITSRPRAF-PDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhc---------cCCCCeEEEEEcCChH-HHHHHhcCCCcEEEECCCCHH
Confidence 9999999875321 1 111 22222221 1568999999996543 224444444456778787755
Q ss_pred h
Q 043781 257 K 257 (297)
Q Consensus 257 ~ 257 (297)
+
T Consensus 154 ~ 154 (166)
T PF05729_consen 154 D 154 (166)
T ss_pred H
Confidence 5
No 6
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.66 E-value=4e-08 Score=86.24 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=57.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC--CCHHHHHHHH-----HHhhcCC-----------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP--FDEFRIAKAI-----IEGLEGS----------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i-----~~~~~~~----------------- 180 (297)
..|+|.+|+|||||++.+|++.... +|+.++|+++++. +++.++++.| +.+++.+
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999975444 8999999998777 7899999998 4444444
Q ss_pred ----CceEEEEEeCCCCC
Q 043781 181 ----EKKFFLILDDVWTD 194 (297)
Q Consensus 181 ----~kr~LiVlDdv~~~ 194 (297)
+++.++++|++...
T Consensus 98 ~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 98 LVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHCCCCEEEEEECHHHh
Confidence 89999999999743
No 7
>PRK06893 DNA replication initiation factor; Validated
Probab=98.61 E-value=1e-07 Score=82.86 Aligned_cols=124 Identities=20% Similarity=0.275 Sum_probs=71.3
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCC-ccCHHH-HH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDD-YSKWEP-FH 203 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~-~~~w~~-l~ 203 (297)
-+||.+|+|||+|++.+++. .........|++++.. ......+++.+ .+.-+|+|||+|... ...|+. +.
T Consensus 43 ~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~~~~~~---~~~dlLilDDi~~~~~~~~~~~~l~ 114 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPAVLENL---EQQDLVCLDDLQAVIGNEEWELAIF 114 (229)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHHHHhhc---ccCCEEEEeChhhhcCChHHHHHHH
Confidence 48899999999999999984 3323334567766421 12222344443 234599999999742 245663 44
Q ss_pred HHHhhhhhhhceeeecCCCCeEEEEeccHHH------HHHHHHhhCCCccccCCccchhh---hhhhhhccC
Q 043781 204 NCLMRVLQEFAAIEVDGDENPLSLTSTCQEK------LRHLTLTLGLRAKFPVSIFDAKK---IWGWEVFGR 266 (297)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~------~~~v~~~~~~~~~~~l~~l~~~~---lf~~~~f~~ 266 (297)
..+... ...|+.+||+|.+... ...+...++...++.+..++.++ ++.+.++..
T Consensus 115 ~l~n~~---------~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 115 DLFNRI---------KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred HHHHHH---------HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 444432 1456666554432211 13556666655667777777554 344444443
No 8
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.54 E-value=7.5e-08 Score=88.66 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=54.7
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC--CHHHHHHHHHHhhcCC-----------------------
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF--DEFRIAKAIIEGLEGS----------------------- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~~~~~----------------------- 180 (297)
.|+|++|+||||||+.||++...+ +|+.++||.+++.. .+.++++.|...+-.+
T Consensus 173 lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 173 LIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999975444 89999999999887 7788888875222111
Q ss_pred ---CceEEEEEeCCCC
Q 043781 181 ---EKKFFLILDDVWT 193 (297)
Q Consensus 181 ---~kr~LiVlDdv~~ 193 (297)
++..||++|++..
T Consensus 252 ~e~G~dVlL~iDsItR 267 (416)
T PRK09376 252 VEHGKDVVILLDSITR 267 (416)
T ss_pred HHcCCCEEEEEEChHH
Confidence 8999999999964
No 9
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=6.7e-07 Score=70.46 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=69.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHH----HHHHHHHhhcCCCceEEEEEeCCCCCCccCHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFR----IAKAIIEGLEGSEKKFFLILDDVWTDDYSKWE 200 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~----~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~ 200 (297)
.-|.|+.|+|||||+++++.+.. .....++++..+...... +...+.+... .++.+|+||++... ..|.
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~iDEiq~~--~~~~ 77 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIK--PGKKYIFIDEIQYL--PDWE 77 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhc--cCCcEEEEehhhhh--ccHH
Confidence 35789999999999999997532 334567776655433221 2233333321 37788999999988 4677
Q ss_pred HHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHH-HHH-hhCCCccccCCccchhh
Q 043781 201 PFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRH-LTL-TLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~-v~~-~~~~~~~~~l~~l~~~~ 257 (297)
..-..+.+. .+..+|++|+........ ... ..|-...+.|.+++-.|
T Consensus 78 ~~lk~l~d~----------~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 78 DALKFLVDN----------GPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHHHHh----------ccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 655555542 556899999875443322 111 12222445555555443
No 10
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.37 E-value=3.8e-07 Score=82.33 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=75.3
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC----CceEEEEEeCCCCCCccCHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS----EKKFFLILDDVWTDDYSKWE 200 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~----~kr~LiVlDdv~~~~~~~w~ 200 (297)
.-+||++|+||||||+.+.+..+... ..||..|-...-..-.+.|+++.... ++|.+|.+|.|..-+..+-+
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD 240 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD 240 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh
Confidence 34799999999999999999533322 56777665544344444454444332 79999999999887655555
Q ss_pred HHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCCccccCCccchhh
Q 043781 201 PFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLRAKFPVSIFDAKK 257 (297)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~~~~~l~~l~~~~ 257 (297)
.+ ||.. .+|+.++|-..+++...++... +.-..++.|+.|....
T Consensus 241 ~f---LP~V----------E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~ 285 (554)
T KOG2028|consen 241 TF---LPHV----------ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNA 285 (554)
T ss_pred cc---ccee----------ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHH
Confidence 44 4443 7888888854444444454333 3334677888886443
No 11
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.36 E-value=1.1e-06 Score=82.91 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=45.0
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcC---CCceEEEEEeCCCCCCccCHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG---SEKKFFLILDDVWTDDYSKWEPF 202 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~---~~kr~LiVlDdv~~~~~~~w~~l 202 (297)
-++|++|+||||||+.+++. ....| +.++....-..-++.+++.... .+++.+|+||+++.....+.+.|
T Consensus 40 lL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~L 112 (413)
T PRK13342 40 ILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDAL 112 (413)
T ss_pred EEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHH
Confidence 47899999999999999984 33333 2222222112222333333321 25889999999998754555555
Q ss_pred HHHH
Q 043781 203 HNCL 206 (297)
Q Consensus 203 ~~~l 206 (297)
...+
T Consensus 113 L~~l 116 (413)
T PRK13342 113 LPHV 116 (413)
T ss_pred HHHh
Confidence 5544
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.34 E-value=4.8e-06 Score=73.77 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=52.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC-----------------------C
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----------------------E 181 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-----------------------~ 181 (297)
.-|+|++|+|||||++.+++.... ..+ ..+|+. ....+..+++..|+..++.+ +
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 357899999999999999985321 111 223332 33446667777777666542 6
Q ss_pred ceEEEEEeCCCCCCccCHHHHHH
Q 043781 182 KKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 182 kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
++.+||+||+|......++.++.
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHH
Confidence 78999999999976556666654
No 13
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.31 E-value=1.4e-06 Score=87.16 Aligned_cols=115 Identities=18% Similarity=0.177 Sum_probs=63.1
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeC--CCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS--DPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFH 203 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs--~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~ 203 (297)
-++|++|+||||||+.+++ ....+|. .++.+ ...++.+++..+...+...+++.+|||||++..+...++.|.
T Consensus 56 LL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL 130 (725)
T PRK13341 56 ILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALL 130 (725)
T ss_pred EEECCCCCCHHHHHHHHHH--HhcCcce---eehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHH
Confidence 4789999999999999998 3445552 12111 111222333333222222256789999999876545566565
Q ss_pred HHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhC-CCccccCCccchhhh
Q 043781 204 NCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLG-LRAKFPVSIFDAKKI 258 (297)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~-~~~~~~l~~l~~~~l 258 (297)
..+ .+|+.++|++++++....+....- -..++.+.+++.+++
T Consensus 131 ~~l-------------E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi 173 (725)
T PRK13341 131 PWV-------------ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDL 173 (725)
T ss_pred HHh-------------cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHH
Confidence 444 455666664433322222222111 124677777776554
No 14
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=7.3e-07 Score=69.98 Aligned_cols=91 Identities=21% Similarity=0.207 Sum_probs=62.7
Q ss_pred cccccCCcchHHHHHHHhcccccccC-----CCceEEEEeCCCCCHHHHHHHHHHhhcCC--------------------
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIEN-----FDKRIWVCVSDPFDEFRIAKAIIEGLEGS-------------------- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-------------------- 180 (297)
-|+|.+|+|||++++.+.+. .... -...+|+..+...+...+...|+.+++..
T Consensus 8 ~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 8 VISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp EEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 47899999999999999984 2211 23556898888778999999999998765
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEec
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
.+..+||||++..- ....++.|+..+ +..+.++|+..+
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~------------~~~~~~vvl~G~ 124 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLL------------NESNIKVVLVGT 124 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHT------------CSCBEEEEEEES
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHH------------hCCCCeEEEEEC
Confidence 55689999999765 333333343322 145556776654
No 15
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.28 E-value=3.7e-06 Score=72.53 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=63.4
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCcc-CH-HHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYS-KW-EPFH 203 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~-~w-~~l~ 203 (297)
-++|.+|+|||+||+.+++. ........+++.++.-.. -...++..+. +.-+|||||+...... .| +.+.
T Consensus 42 ll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~---~~~~~~~~~~---~~~lLvIDdi~~l~~~~~~~~~L~ 113 (226)
T TIGR03420 42 YLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ---ADPEVLEGLE---QADLVCLDDVEAIAGQPEWQEALF 113 (226)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH---hHHHHHhhcc---cCCEEEEeChhhhcCChHHHHHHH
Confidence 48899999999999999984 333333445665432211 1123333332 2348999999876422 33 3455
Q ss_pred HHHhhhhhhhceeeecCCCCeEEEEeccHHHH-----HHHHHhhCCCccccCCccchhh
Q 043781 204 NCLMRVLQEFAAIEVDGDENPLSLTSTCQEKL-----RHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~-----~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
..+... ...+.++|+||+..... ..+...+.....+.+.+++..+
T Consensus 114 ~~l~~~---------~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e 163 (226)
T TIGR03420 114 HLYNRV---------REAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEE 163 (226)
T ss_pred HHHHHH---------HHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHH
Confidence 555432 13445788888743211 3334344322445666665444
No 16
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.23 E-value=1.9e-06 Score=79.75 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=55.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC--CCHHHHHHHH-----HHhhcCC-----------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP--FDEFRIAKAI-----IEGLEGS----------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i-----~~~~~~~----------------- 180 (297)
..|+|.+|+|||||++.+++... .++|+..+|+.+++. .++.++++.| +..+..+
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~ 249 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKR 249 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHH
Confidence 36899999999999999999633 347999999999866 7888999888 3333332
Q ss_pred ----CceEEEEEeCCCCC
Q 043781 181 ----EKKFFLILDDVWTD 194 (297)
Q Consensus 181 ----~kr~LiVlDdv~~~ 194 (297)
+++.+|++|.+...
T Consensus 250 ~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 250 LVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHcCCCeEEEEEChhHH
Confidence 99999999999753
No 17
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.21 E-value=6.2e-06 Score=77.27 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=48.5
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcC-----------------------CCc
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG-----------------------SEK 182 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~-----------------------~~k 182 (297)
-|+|++|+|||++++.++++.......-..++++.....+...++..|+.++.. .++
T Consensus 59 lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (394)
T PRK00411 59 LIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDR 138 (394)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 489999999999999999853222212345566655555666777777776643 156
Q ss_pred eEEEEEeCCCCC
Q 043781 183 KFFLILDDVWTD 194 (297)
Q Consensus 183 r~LiVlDdv~~~ 194 (297)
..+||||+++.-
T Consensus 139 ~~viviDE~d~l 150 (394)
T PRK00411 139 VLIVALDDINYL 150 (394)
T ss_pred EEEEEECCHhHh
Confidence 689999999874
No 18
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.17 E-value=7.6e-06 Score=64.46 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=56.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHH-------HHhhcCCCceEEEEEeCCCCCCcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI-------IEGLEGSEKKFFLILDDVWTDDYS 197 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i-------~~~~~~~~kr~LiVlDdv~~~~~~ 197 (297)
.-|+|.+|+|||+|++.+++. ....-...+++..+...........+ ........+..+||+||++.....
T Consensus 22 v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~ 99 (151)
T cd00009 22 LLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG 99 (151)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHH
Confidence 458899999999999999984 32222345566655443332222111 111222267899999999865212
Q ss_pred CHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccH
Q 043781 198 KWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ 232 (297)
Q Consensus 198 ~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~ 232 (297)
....+...+...... . ....+..||+||...
T Consensus 100 ~~~~~~~~i~~~~~~---~-~~~~~~~ii~~~~~~ 130 (151)
T cd00009 100 AQNALLRVLETLNDL---R-IDRENVRVIGATNRP 130 (151)
T ss_pred HHHHHHHHHHhcCce---e-ccCCCeEEEEecCcc
Confidence 233344444432100 0 013567788888743
No 19
>PRK08727 hypothetical protein; Validated
Probab=98.14 E-value=1e-05 Score=70.43 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=69.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCc-cCHHH-H
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDY-SKWEP-F 202 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~-~~w~~-l 202 (297)
.-++|..|+|||+|++.+++. ..++.-...|+++.+. ...+.++++.+ .+--+|||||+..... ..|.. +
T Consensus 44 l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~---~~~~~~~~~~l---~~~dlLiIDDi~~l~~~~~~~~~l 115 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAA---AGRLRDALEAL---EGRSLVALDGLESIAGQREDEVAL 115 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHh---hhhHHHHHHHH---hcCCEEEEeCcccccCChHHHHHH
Confidence 568999999999999999884 3333335567764431 12223344444 3456999999975421 23443 2
Q ss_pred HHHHhhhhhhhceeeecCCCCeEEEEeccHHH-----HHHHHHhhCCCccccCCccchhhh
Q 043781 203 HNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-----LRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-----~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
-..+... ..+|..||+|++..-. ...+...+....+++|.+++.+++
T Consensus 116 f~l~n~~---------~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 116 FDFHNRA---------RAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred HHHHHHH---------HHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 2222221 1456779999874321 234445554446778888876664
No 20
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.06 E-value=1.9e-05 Score=68.94 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=67.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCc-cCHHH-H
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDY-SKWEP-F 202 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~-~~w~~-l 202 (297)
.-|+|++|+|||+|++.+++. ....-..+.++++..... ...++.+.+. +--+|+|||+..... ..|+. +
T Consensus 48 l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---~~~~~~~~~~---~~dlliiDdi~~~~~~~~~~~~l 119 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---FVPEVLEGME---QLSLVCIDNIECIAGDELWEMAI 119 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---hhHHHHHHhh---hCCEEEEeChhhhcCCHHHHHHH
Confidence 358999999999999999883 332223445665543211 1112222221 224899999976421 35654 3
Q ss_pred HHHHhhhhhhhceeeecCCC-CeEEEEeccHHH-----HHHHHHhhCCCccccCCccchhhh
Q 043781 203 HNCLMRVLQEFAAIEVDGDE-NPLSLTSTCQEK-----LRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~g-s~iiiTTr~~~~-----~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
...+.... .+| .++|+||+..-. ...+...+....++.+.+++.+++
T Consensus 120 f~l~n~~~---------e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 120 FDLYNRIL---------ESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEK 172 (235)
T ss_pred HHHHHHHH---------HcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHH
Confidence 33443321 334 478999875421 245666676667788888865553
No 21
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=2.3e-05 Score=71.27 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=78.9
Q ss_pred ccccCCcchHHHHHHHhccc----ccccCCCceEEEE-eCCCCCHHHHHHHHHHhhcCC---CceEEEEEeCCCCCCccC
Q 043781 127 VRGMGGIGKTTLAQFAYNDK----DVIENFDKRIWVC-VSDPFDEFRIAKAIIEGLEGS---EKKFFLILDDVWTDDYSK 198 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~----~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~~~~~---~kr~LiVlDdv~~~~~~~ 198 (297)
++|+.|+||||+|+.+++.- ....|+|...|.. -+....+.++ +++.+.+... +++=++|+|++.....+.
T Consensus 31 f~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a 109 (313)
T PRK05564 31 IVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIEEVNKKPYEGDKKVIIIYNSEKMTEQA 109 (313)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHHHHhcCcccCCceEEEEechhhcCHHH
Confidence 67999999999998888731 1245677777765 3445566663 3455544322 666777788887766578
Q ss_pred HHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhC-CCccccCCccchhhhhhh
Q 043781 199 WEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLG-LRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 199 w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~-~~~~~~l~~l~~~~lf~~ 261 (297)
|+.|...+..- .+++.+|++|.+.+ .+..+.. -..++.+..++..++..|
T Consensus 110 ~naLLK~LEep----------p~~t~~il~~~~~~---~ll~TI~SRc~~~~~~~~~~~~~~~~ 160 (313)
T PRK05564 110 QNAFLKTIEEP----------PKGVFIILLCENLE---QILDTIKSRCQIYKLNRLSKEEIEKF 160 (313)
T ss_pred HHHHHHHhcCC----------CCCeEEEEEeCChH---hCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 99898888752 66788888886543 3322211 125778888877765443
No 22
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.01 E-value=5.2e-05 Score=63.67 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=72.4
Q ss_pred ccccCCcchHHHHHHHhcccccc--------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---Cce
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI--------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKK 183 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr 183 (297)
++|+.|+||||+|+.+.+.-.-. .+.|...............+ +++.+.+... +.+
T Consensus 19 ~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i-~~i~~~~~~~~~~~~~ 97 (188)
T TIGR00678 19 FAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV-RELVEFLSRTPQESGR 97 (188)
T ss_pred EECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH-HHHHHHHccCcccCCe
Confidence 68999999999998887631111 22233322222223444443 3444444332 677
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhC-CCccccCCccchhhhhhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLG-LRAKFPVSIFDAKKIWGWE 262 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~-~~~~~~l~~l~~~~lf~~~ 262 (297)
-++|+|++.....+.++.|...+... ...+.+|++|+... .+..... -..++.+.+++..++..|-
T Consensus 98 kviiide~~~l~~~~~~~Ll~~le~~----------~~~~~~il~~~~~~---~l~~~i~sr~~~~~~~~~~~~~~~~~l 164 (188)
T TIGR00678 98 RVVIIEDAERMNEAAANALLKTLEEP----------PPNTLFILITPSPE---KLLPTIRSRCQVLPFPPLSEEALLQWL 164 (188)
T ss_pred EEEEEechhhhCHHHHHHHHHHhcCC----------CCCeEEEEEECChH---hChHHHHhhcEEeeCCCCCHHHHHHHH
Confidence 79999999887655677777777542 44566777765432 2222111 1257888888888865554
Q ss_pred h
Q 043781 263 V 263 (297)
Q Consensus 263 ~ 263 (297)
.
T Consensus 165 ~ 165 (188)
T TIGR00678 165 I 165 (188)
T ss_pred H
Confidence 3
No 23
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=4.1e-05 Score=74.35 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=71.6
Q ss_pred ccccCCcchHHHHHHHhccccc-------------------ccCCCceEEEEeCCCCCHHHHHHHHHHhhcC---CCceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV-------------------IENFDKRIWVCVSDPFDEFRIAKAIIEGLEG---SEKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~-------------------~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~---~~kr~ 184 (297)
++|+.|+||||+|+.+.+.-.- ...|.-.+++.......+.++ ++|++.+.. .+++-
T Consensus 43 f~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~i-r~ii~~~~~~p~~g~~k 121 (546)
T PRK14957 43 FTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEET-KEILDNIQYMPSQGRYK 121 (546)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHH-HHHHHHHHhhhhcCCcE
Confidence 6899999999999998873110 012333444544444444443 444444432 26777
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCCccccCCccchhhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLRAKFPVSIFDAKKIWG 260 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~~~~~l~~l~~~~lf~ 260 (297)
++|+|++.....+.++.|...+... .....+|++|.+. ..+... ..-...+.+..++.+++..
T Consensus 122 ViIIDEa~~ls~~a~naLLK~LEep----------p~~v~fIL~Ttd~---~kil~tI~SRc~~~~f~~Ls~~eI~~ 185 (546)
T PRK14957 122 VYLIDEVHMLSKQSFNALLKTLEEP----------PEYVKFILATTDY---HKIPVTILSRCIQLHLKHISQADIKD 185 (546)
T ss_pred EEEEechhhccHHHHHHHHHHHhcC----------CCCceEEEEECCh---hhhhhhHHHheeeEEeCCCCHHHHHH
Confidence 9999999887656777888777652 3455566555432 222222 1112677888887776643
No 24
>PRK08116 hypothetical protein; Validated
Probab=97.94 E-value=3.2e-05 Score=68.82 Aligned_cols=91 Identities=25% Similarity=0.245 Sum_probs=53.9
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC------------CceEEEEEeCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS------------EKKFFLILDDVW 192 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~------------~kr~LiVlDdv~ 192 (297)
.-++|.+|+|||+||..+++. +..+--..+++++ .+++..|....... ..-=||||||+-
T Consensus 117 l~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg 188 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLG 188 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEeccc
Confidence 347899999999999999994 4333334556643 33444433222110 222389999996
Q ss_pred CCCccCHHH--HHHHHhhhhhhhceeeecCCCCeEEEEeccH
Q 043781 193 TDDYSKWEP--FHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ 232 (297)
Q Consensus 193 ~~~~~~w~~--l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~ 232 (297)
......|.. |-..+... -.+|..+||||...
T Consensus 189 ~e~~t~~~~~~l~~iin~r---------~~~~~~~IiTsN~~ 221 (268)
T PRK08116 189 AERDTEWAREKVYNIIDSR---------YRKGLPTIVTTNLS 221 (268)
T ss_pred CCCCCHHHHHHHHHHHHHH---------HHCCCCEEEECCCC
Confidence 544356654 33333221 15677899999743
No 25
>PRK05642 DNA replication initiation factor; Validated
Probab=97.93 E-value=3.8e-05 Score=66.96 Aligned_cols=117 Identities=19% Similarity=0.276 Sum_probs=66.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCC-ccCHHH-H
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDD-YSKWEP-F 202 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~-~~~w~~-l 202 (297)
.-|+|..|+|||+|++.+.+. ....-..++|++...-.. ....+.+.+.. -=++|+||+.... ...|+. +
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~~~~---~~~~~~~~~~~---~d~LiiDDi~~~~~~~~~~~~L 119 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAELLD---RGPELLDNLEQ---YELVCLDDLDVIAGKADWEEAL 119 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHHHHh---hhHHHHHhhhh---CCEEEEechhhhcCChHHHHHH
Confidence 358899999999999999873 322223456775432111 11223333321 1278899997542 135654 4
Q ss_pred HHHHhhhhhhhceeeecCCCCeEEEEeccHHH-----HHHHHHhhCCCccccCCccchhhh
Q 043781 203 HNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-----LRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-----~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
-..+... ..+|..+|+|++.... ...+..+++...++.+++++.+++
T Consensus 120 f~l~n~~---------~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 120 FHLFNRL---------RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred HHHHHHH---------HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 4444332 1567789999874322 133344554446677788776654
No 26
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=7.2e-05 Score=72.12 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=71.4
Q ss_pred ccccCCcchHHHHHHHhcccccccC-----------------------CCceEEEEeCCCCCHHHHHHHHHHhhcCC---
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIEN-----------------------FDKRIWVCVSDPFDEFRIAKAIIEGLEGS--- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~-----------------------F~~~~wv~vs~~~~~~~~~~~i~~~~~~~--- 180 (297)
++|++|+||||+|+.+++.-..... ..-...+.......+.++ +++++.....
T Consensus 48 f~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~I-r~iie~a~~~P~~ 126 (507)
T PRK06645 48 LTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDI-RRIIESAEYKPLQ 126 (507)
T ss_pred EECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHH-HHHHHHHHhcccc
Confidence 6799999999999999874211110 011223334444455544 3444444322
Q ss_pred CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-CccccCCccchhhhh
Q 043781 181 EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAKFPVSIFDAKKIW 259 (297)
Q Consensus 181 ~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~~~l~~l~~~~lf 259 (297)
+++-++|+|+++......|+.|...+..- ...+.+|++|... ..+...... ...+.+..++..+++
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEep----------p~~~vfI~aTte~---~kI~~tI~SRc~~~ef~~ls~~el~ 193 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEP----------PPHIIFIFATTEV---QKIPATIISRCQRYDLRRLSFEEIF 193 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhc----------CCCEEEEEEeCCh---HHhhHHHHhcceEEEccCCCHHHHH
Confidence 67889999999987656788887777642 4445555544322 223322211 246778888877765
Q ss_pred hh
Q 043781 260 GW 261 (297)
Q Consensus 260 ~~ 261 (297)
.|
T Consensus 194 ~~ 195 (507)
T PRK06645 194 KL 195 (507)
T ss_pred HH
Confidence 43
No 27
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=7.9e-05 Score=69.25 Aligned_cols=122 Identities=18% Similarity=0.211 Sum_probs=71.1
Q ss_pred cccccCCcchHHHHHHHhccccccc-------------------CCCceEEEEeCCCCCHHHHHHHHHHhhcCC---Cce
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIE-------------------NFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKK 183 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr 183 (297)
=++|++|+||||+|+.+.+.-.... .+.-..++..+....+.+ .+++++.+... +++
T Consensus 42 L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~ 120 (363)
T PRK14961 42 LLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRF 120 (363)
T ss_pred EEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCc
Confidence 3789999999999999887421111 111123333333334433 45555554322 566
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCCccccCCccchhhhhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~~~~~l~~l~~~~lf~~ 261 (297)
-++|+|++.......++.+...+... ....++|++|...+ .+..+ .+-...+++.+++.+++..|
T Consensus 121 kviIIDEa~~l~~~a~naLLk~lEe~----------~~~~~fIl~t~~~~---~l~~tI~SRc~~~~~~~l~~~el~~~ 186 (363)
T PRK14961 121 KVYLIDEVHMLSRHSFNALLKTLEEP----------PQHIKFILATTDVE---KIPKTILSRCLQFKLKIISEEKIFNF 186 (363)
T ss_pred eEEEEEChhhcCHHHHHHHHHHHhcC----------CCCeEEEEEcCChH---hhhHHHHhhceEEeCCCCCHHHHHHH
Confidence 79999999887655677776666542 44566777765432 22222 11125678888887776443
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=97.91 E-value=6.5e-05 Score=68.53 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=67.3
Q ss_pred ccccCCcchHHHHHHHhcccccccCCC-ceEEEEeCCCCCHHHHHHHHHHhhcC------CCceEEEEEeCCCCCCccCH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAIIEGLEG------SEKKFFLILDDVWTDDYSKW 199 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~~~~------~~kr~LiVlDdv~~~~~~~w 199 (297)
++|++|+||||+|+.+.+.- ....|. ..+-++.+...+.. ..++++..+.. .++.-+++||++.....+..
T Consensus 39 l~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq 116 (319)
T PLN03025 39 LSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ 116 (319)
T ss_pred EECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH
Confidence 78999999999999988731 122232 12223334433333 23333322111 14677999999988754455
Q ss_pred HHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhhhhh
Q 043781 200 EPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~lf~~ 261 (297)
+.|...+... .+.+++|+++..... ...+-... .++++..++..++..|
T Consensus 117 ~aL~~~lE~~----------~~~t~~il~~n~~~~i~~~L~SRc---~~i~f~~l~~~~l~~~ 166 (319)
T PLN03025 117 QALRRTMEIY----------SNTTRFALACNTSSKIIEPIQSRC---AIVRFSRLSDQEILGR 166 (319)
T ss_pred HHHHHHHhcc----------cCCceEEEEeCCccccchhHHHhh---hcccCCCCCHHHHHHH
Confidence 5566555432 455677777653321 12222221 4678888877776443
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=4.9e-05 Score=73.44 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=71.5
Q ss_pred cccccCCcchHHHHHHHhcccccccCCC------------------ceEEEEeCCCCCHHHHHHHHHHhhcC---CCceE
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFD------------------KRIWVCVSDPFDEFRIAKAIIEGLEG---SEKKF 184 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~------------------~~~wv~vs~~~~~~~~~~~i~~~~~~---~~kr~ 184 (297)
-++|++|+||||+|+.+.+.-...+.+. -..++..+....+.. .+++.+.+.. .+++-
T Consensus 40 Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~-iR~l~~~~~~~p~~~~~k 118 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVED-VRDLREKVLLAPLRGGRK 118 (504)
T ss_pred EEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHH-HHHHHHHHhhccccCCCe
Confidence 4789999999999999987432222221 133444443444433 3444443332 15677
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhh-CCCccccCCccchhhhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTL-GLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~-~~~~~~~l~~l~~~~lf~~ 261 (297)
++|||+++......++.|...+... .....+|++|... ..+.... .-...+.+..++..++..|
T Consensus 119 VVIIDEad~ls~~a~naLLk~LEep----------~~~t~~Il~t~~~---~kl~~~I~SRc~~~~f~~ls~~el~~~ 183 (504)
T PRK14963 119 VYILDEAHMMSKSAFNALLKTLEEP----------PEHVIFILATTEP---EKMPPTILSRTQHFRFRRLTEEEIAGK 183 (504)
T ss_pred EEEEECccccCHHHHHHHHHHHHhC----------CCCEEEEEEcCCh---hhCChHHhcceEEEEecCCCHHHHHHH
Confidence 9999999877655677777777542 3445556665432 2222111 1125678888888776554
No 30
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.90 E-value=3.5e-05 Score=71.41 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=48.3
Q ss_pred ccccccCCcchHHHHHHHhcccccc-cCC---CceEEEEeCCCCCHHHHHHHHHHhhc---C------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVI-ENF---DKRIWVCVSDPFDEFRIAKAIIEGLE---G------------------ 179 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~~~i~~~~~---~------------------ 179 (297)
.-|+|++|+|||++++.+++.-.-. ... -..+|++.....+...++..|++++. .
T Consensus 43 i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (365)
T TIGR02928 43 VFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYK 122 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence 3488999999999999999842110 111 13457776665666677777777662 1
Q ss_pred ----CCceEEEEEeCCCCC
Q 043781 180 ----SEKKFFLILDDVWTD 194 (297)
Q Consensus 180 ----~~kr~LiVlDdv~~~ 194 (297)
.+++++||||+++.-
T Consensus 123 ~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 123 ELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHhcCCeEEEEECchhhh
Confidence 156789999999876
No 31
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.89 E-value=3.2e-05 Score=60.38 Aligned_cols=64 Identities=23% Similarity=0.110 Sum_probs=43.0
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC-----CCHHHHHHHHHHhhcCCCceEEEEEeCCCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-----FDEFRIAKAIIEGLEGSEKKFFLILDDVWTDD 195 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~ 195 (297)
|+|++|+|||++|+.+.+. ...+ .+.+..+.- .+..+.+..++.+.....++.+|+|||+....
T Consensus 3 l~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLF 71 (132)
T ss_dssp EESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTS
T ss_pred EECcCCCCeeHHHHHHHhh--cccc---cccccccccccccccccccccccccccccccccceeeeeccchhcc
Confidence 6899999999999999995 3322 244443221 23455666666665442347999999998753
No 32
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=7.2e-05 Score=71.70 Aligned_cols=120 Identities=17% Similarity=0.097 Sum_probs=67.2
Q ss_pred ccccCCcchHHHHHHHhccccccc-------------------CCCceEEEEeCCCCCHHHHHHHHHHhhcCC---CceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIE-------------------NFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr~ 184 (297)
++|++|+||||+|+.+.+.-.... .+.....+..+...++.++ ++|.+..... +++-
T Consensus 41 f~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~i-R~i~~~~~~~p~~~~~k 119 (472)
T PRK14962 41 FAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEI-RKIRDAVGYRPMEGKYK 119 (472)
T ss_pred EECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHH-HHHHHHHhhChhcCCeE
Confidence 789999999999999977421110 0112334444444445443 3455444322 6777
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKIWG 260 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~lf~ 260 (297)
++|+|++.....+..+.|...+... .....+|++|.... +...+..+ ..++.+.+++..++..
T Consensus 120 VvIIDE~h~Lt~~a~~~LLk~LE~p----------~~~vv~Ilattn~~kl~~~L~SR---~~vv~f~~l~~~el~~ 183 (472)
T PRK14962 120 VYIIDEVHMLTKEAFNALLKTLEEP----------PSHVVFVLATTNLEKVPPTIISR---CQVIEFRNISDELIIK 183 (472)
T ss_pred EEEEEChHHhHHHHHHHHHHHHHhC----------CCcEEEEEEeCChHhhhHHHhcC---cEEEEECCccHHHHHH
Confidence 9999999765444556666666541 23344444554332 22222222 2577788887776644
No 33
>PRK06620 hypothetical protein; Validated
Probab=97.87 E-value=3.8e-05 Score=66.03 Aligned_cols=102 Identities=19% Similarity=0.151 Sum_probs=58.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
.-|||++|+|||+|++.+.+... . .++. ..+... +.+ ...-++++||+.... . ..+-.
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~~----~~~------~~~d~lliDdi~~~~--~-~~lf~ 104 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFNE----EIL------EKYNAFIIEDIENWQ--E-PALLH 104 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhch----hHH------hcCCEEEEeccccch--H-HHHHH
Confidence 45899999999999999887432 1 1221 111111 111 134578999996321 0 12322
Q ss_pred HHhhhhhhhceeeecCCCCeEEEEeccHHHH---HHHHHhhCCCccccCCccchhh
Q 043781 205 CLMRVLQEFAAIEVDGDENPLSLTSTCQEKL---RHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 205 ~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~---~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
.+... ..+|..||+|++.+... ..+..++...-++.+++++.++
T Consensus 105 l~N~~---------~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~ 151 (214)
T PRK06620 105 IFNII---------NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDEL 151 (214)
T ss_pred HHHHH---------HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHH
Confidence 22221 15677899998755332 3455555544577888887655
No 34
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.86 E-value=3.2e-05 Score=66.26 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=44.0
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHNC 205 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~~ 205 (297)
=+||++|+||||||..+.+ +....|. +++.+.--...+ +..++.++ +++-+|.+|.++.-+..+-+.|-+.
T Consensus 54 lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~d-l~~il~~l---~~~~ILFIDEIHRlnk~~qe~Llpa 124 (233)
T PF05496_consen 54 LFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAGD-LAAILTNL---KEGDILFIDEIHRLNKAQQEILLPA 124 (233)
T ss_dssp EEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCHH-HHHHHHT-----TT-EEEECTCCC--HHHHHHHHHH
T ss_pred EEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHHH-HHHHHHhc---CCCcEEEEechhhccHHHHHHHHHH
Confidence 4789999999999999999 4555552 333221112222 33445555 3567899999998876556666666
Q ss_pred Hhhh
Q 043781 206 LMRV 209 (297)
Q Consensus 206 l~~~ 209 (297)
+.++
T Consensus 125 mEd~ 128 (233)
T PF05496_consen 125 MEDG 128 (233)
T ss_dssp HHCS
T ss_pred hccC
Confidence 6553
No 35
>PRK09087 hypothetical protein; Validated
Probab=97.82 E-value=6.6e-05 Score=65.10 Aligned_cols=106 Identities=17% Similarity=0.112 Sum_probs=62.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
.-|||..|+|||+|++.+++... ..+++. ..+..+++..+. .-+|+|||+.... ..-+.+-.
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~------~~~~~~~~~~~~----~~~l~iDDi~~~~-~~~~~lf~ 108 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSD-------ALLIHP------NEIGSDAANAAA----EGPVLIEDIDAGG-FDETGLFH 108 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-------CEEecH------HHcchHHHHhhh----cCeEEEECCCCCC-CCHHHHHH
Confidence 46999999999999999887421 124432 233333333332 2378889996542 11223333
Q ss_pred HHhhhhhhhceeeecCCCCeEEEEeccHHH-----HHHHHHhhCCCccccCCccchhh
Q 043781 205 CLMRVLQEFAAIEVDGDENPLSLTSTCQEK-----LRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 205 ~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-----~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
.+... ...|..||+|++.+.. ...+...+....++.+++++.++
T Consensus 109 l~n~~---------~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 109 LINSV---------RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL 157 (226)
T ss_pred HHHHH---------HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHH
Confidence 33322 2567889999874322 23344555555677888887655
No 36
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.82 E-value=9e-05 Score=67.78 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=52.6
Q ss_pred cccccCCcchHHHHHHHhcccccc-cCCC-ceEEEEeCCC-----------C--------------CHHHHHHHHHHhhc
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVI-ENFD-KRIWVCVSDP-----------F--------------DEFRIAKAIIEGLE 178 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~-~~F~-~~~wv~vs~~-----------~--------------~~~~~~~~i~~~~~ 178 (297)
-++|++|+||||+|+.+.+. +. ..+. ..+.++++.. + ...+.++.++....
T Consensus 40 ll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 40 LVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred EEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 47899999999999998873 32 1222 1234443321 0 01233444433321
Q ss_pred C----CCceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 179 G----SEKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 179 ~----~~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
. .+.+-+|||||+..........|...+... .+.+++|+||..
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~----------~~~~~~Il~~~~ 164 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALREDAQQALRRIMEQY----------SRTCRFIIATRQ 164 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc----------cCCCeEEEEeCC
Confidence 1 134558999999766433445565555432 445778888754
No 37
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=7.3e-05 Score=75.62 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=71.4
Q ss_pred ccccCCcchHHHHHHHhcccccccC-------------------CCceEEEEeCCCCCHHHHHHHHHHhhcCC---CceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIEN-------------------FDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr~ 184 (297)
++|..|+||||+|+.+.+.-..... |.-.+++..+....+.. +++|.+.+... +++-
T Consensus 43 FtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDd-IReLie~v~~~P~~gk~K 121 (944)
T PRK14949 43 FTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDD-TRELLDNVQYRPSRGRFK 121 (944)
T ss_pred EECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHH-HHHHHHHHHhhhhcCCcE
Confidence 7899999999999999974211111 11123443332333333 35555544322 6788
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKIW 259 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~lf 259 (297)
++|||++.....+.++.|...+..- ....++|++|..... ...+..+ ...+++..++..++.
T Consensus 122 ViIIDEAh~LT~eAqNALLKtLEEP----------P~~vrFILaTTe~~kLl~TIlSR---Cq~f~fkpLs~eEI~ 184 (944)
T PRK14949 122 VYLIDEVHMLSRSSFNALLKTLEEP----------PEHVKFLLATTDPQKLPVTVLSR---CLQFNLKSLTQDEIG 184 (944)
T ss_pred EEEEechHhcCHHHHHHHHHHHhcc----------CCCeEEEEECCCchhchHHHHHh---heEEeCCCCCHHHHH
Confidence 9999999988767888887777542 345566666554322 2122111 256788888766653
No 38
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00012 Score=72.96 Aligned_cols=119 Identities=17% Similarity=0.159 Sum_probs=72.5
Q ss_pred ccccCCcchHHHHHHHhcccccc-------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---CceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI-------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr~ 184 (297)
++|..|+||||+|+.+.+.-... ..|.-.+++..+.+..+.+ ++++++..... ++.-
T Consensus 43 FtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDd-IReLIe~a~~~P~~gr~K 121 (830)
T PRK07003 43 FTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDE-MAALLERAVYAPVDARFK 121 (830)
T ss_pred EECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHH-HHHHHHHHHhccccCCce
Confidence 77999999999998777632111 1232345555554444444 33444443322 4556
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCCccccCCccchhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLRAKFPVSIFDAKKIW 259 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~~~~~l~~l~~~~lf 259 (297)
++|||++.......|+.|...|..- ....++|+||+... .+..+ ..-...+++..++..++.
T Consensus 122 VIIIDEah~LT~~A~NALLKtLEEP----------P~~v~FILaTtd~~---KIp~TIrSRCq~f~Fk~Ls~eeIv 184 (830)
T PRK07003 122 VYMIDEVHMLTNHAFNAMLKTLEEP----------PPHVKFILATTDPQ---KIPVTVLSRCLQFNLKQMPAGHIV 184 (830)
T ss_pred EEEEeChhhCCHHHHHHHHHHHHhc----------CCCeEEEEEECChh---hccchhhhheEEEecCCcCHHHHH
Confidence 8889999988666788887777552 45677777776543 22211 111256788888776654
No 39
>PRK12377 putative replication protein; Provisional
Probab=97.79 E-value=9.2e-05 Score=65.01 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=53.0
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC----------CceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS----------EKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~----------~kr~LiVlDdv~~~ 194 (297)
.-++|.+|+|||+||..+.+. +....-.+++++++ +++..|-...... .+-=||||||+-..
T Consensus 104 l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 347899999999999999994 43333345666543 3333332221100 45679999999665
Q ss_pred CccCHHH--HHHHHhhhhhhhceeeecCCCCeEEEEec
Q 043781 195 DYSKWEP--FHNCLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 195 ~~~~w~~--l~~~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
....|.. |-..+..- -++.-.+||||.
T Consensus 176 ~~s~~~~~~l~~ii~~R---------~~~~~ptiitSN 204 (248)
T PRK12377 176 RETKNEQVVLNQIIDRR---------TASMRSVGMLTN 204 (248)
T ss_pred CCCHHHHHHHHHHHHHH---------HhcCCCEEEEcC
Confidence 4456653 33333221 144456788875
No 40
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00015 Score=71.29 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=71.9
Q ss_pred ccccCCcchHHHHHHHhcccccc-------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---CceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI-------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr~ 184 (297)
++|+.|+||||+|+.+.+.-... ..|.-.+.+..+.+..+.++ ++++..+... +++-
T Consensus 42 F~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddI-Reli~~~~y~P~~gk~K 120 (702)
T PRK14960 42 FTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDT-RELLDNVPYAPTQGRFK 120 (702)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHH-HHHHHHHhhhhhcCCcE
Confidence 67999999999999887632110 12222344444444455443 4455544322 5677
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKIWG 260 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~lf~ 260 (297)
++|+|++.......++.|...+..- .++..+|++|..... ...+. .-...+.+..++..++..
T Consensus 121 V~IIDEVh~LS~~A~NALLKtLEEP----------P~~v~FILaTtd~~kIp~TIl---SRCq~feFkpLs~eEI~k 184 (702)
T PRK14960 121 VYLIDEVHMLSTHSFNALLKTLEEP----------PEHVKFLFATTDPQKLPITVI---SRCLQFTLRPLAVDEITK 184 (702)
T ss_pred EEEEechHhcCHHHHHHHHHHHhcC----------CCCcEEEEEECChHhhhHHHH---HhhheeeccCCCHHHHHH
Confidence 8999999987656777777777542 455677777764322 11221 112567788887666543
No 41
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.75 E-value=0.00013 Score=75.55 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=60.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHhhc-------------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLE------------------------- 178 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~~~------------------------- 178 (297)
.-|.|++|.|||||+...... ++..+|+++.... +...++..++..+.
T Consensus 35 ~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (903)
T PRK04841 35 VLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSL 108 (903)
T ss_pred EEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHH
Confidence 457899999999999988752 2368899886443 44444444444442
Q ss_pred ---------CCCceEEEEEeCCCCCCccCHH-HHHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 179 ---------GSEKKFFLILDDVWTDDYSKWE-PFHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 179 ---------~~~kr~LiVlDdv~~~~~~~w~-~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
..+.+++|||||+...+..... .+...++.. ..+..+|||||.
T Consensus 109 ~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~----------~~~~~lv~~sR~ 161 (903)
T PRK04841 109 FAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ----------PENLTLVVLSRN 161 (903)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC----------CCCeEEEEEeCC
Confidence 1157899999999876433333 444444432 556788899996
No 42
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.00016 Score=68.95 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=64.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTDD 195 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~~ 195 (297)
.-|+|..|+|||+|++.+.+. +...--..++++ ...+...+...+... .+.-+|++||+....
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFS 215 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhc
Confidence 458999999999999999984 332222344553 233333333333221 234589999997653
Q ss_pred ccCH--HHHHHHHhhhhhhhceeeecCCCCeEEEEecc-HHH----HHHHHHhhCCCccccCCccchhh
Q 043781 196 YSKW--EPFHNCLMRVLQEFAAIEVDGDENPLSLTSTC-QEK----LRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 196 ~~~w--~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~-~~~----~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
...| +.+...+... ...|..||+||.. +.. ...+...+...-++++.+++.++
T Consensus 216 ~k~~~qeelf~l~N~l---------~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 216 GKGATQEEFFHTFNSL---------HTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEG 275 (445)
T ss_pred CChhhHHHHHHHHHHH---------HHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHH
Confidence 2222 2233333221 1345678888854 222 23444455434566777776555
No 43
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.71 E-value=4.3e-05 Score=71.02 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=38.0
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEe-CCCC-CHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV-SDPF-DEFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
.-++|++|+|||+||+.+++ ....+|-....... .... .....++.++..... ....+|+||+++..
T Consensus 159 vLL~GppGtGKT~lakaia~--~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-~~p~il~iDEiD~l 227 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAH--ETNATFIRVVGSELVRKYIGEGARLVREIFELAKE-KAPSIIFIDEIDAI 227 (364)
T ss_pred EEEECCCCCCHHHHHHHHHH--hCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHh-cCCcEEEhhhhhhh
Confidence 45789999999999999998 34444411110000 0000 112233444433322 46789999999753
No 44
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.71 E-value=8.9e-05 Score=67.01 Aligned_cols=73 Identities=23% Similarity=0.165 Sum_probs=41.9
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
.-++|++|+|||+||+.+.+. ....| ..+..+....... +...+..+ +...+|++|++........+.+..
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-l~~~l~~~---~~~~vl~iDEi~~l~~~~~e~l~~ 103 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGD-LAAILTNL---EEGDVLFIDEIHRLSPAVEELLYP 103 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchh-HHHHHHhc---ccCCEEEEehHhhhCHHHHHHhhH
Confidence 348899999999999999984 33222 1222221112222 23333444 356799999998764333344444
Q ss_pred HH
Q 043781 205 CL 206 (297)
Q Consensus 205 ~l 206 (297)
.+
T Consensus 104 ~~ 105 (305)
T TIGR00635 104 AM 105 (305)
T ss_pred HH
Confidence 44
No 45
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00028 Score=67.70 Aligned_cols=121 Identities=18% Similarity=0.118 Sum_probs=73.0
Q ss_pred ccccCCcchHHHHHHHhccc------------------ccc-cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---CceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDK------------------DVI-ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~------------------~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr~ 184 (297)
++|+.|+||||+|+.+.+.- .+. ..+.-.+.+..+...++.+ .++|++..... +++=
T Consensus 40 f~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vdd-IR~Iie~~~~~P~~~~~K 118 (491)
T PRK14964 40 LVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDD-IKVILENSCYLPISSKFK 118 (491)
T ss_pred EECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHH-HHHHHHHHHhccccCCce
Confidence 67999999999998887620 011 1222344566665556655 34455544322 6777
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~lf~~ 261 (297)
++|+|++.....+.++.|...+..- .+...+|++|.... +...+-.. ...+.+..++..++..|
T Consensus 119 VvIIDEah~Ls~~A~NaLLK~LEeP----------p~~v~fIlatte~~Kl~~tI~SR---c~~~~f~~l~~~el~~~ 183 (491)
T PRK14964 119 VYIIDEVHMLSNSAFNALLKTLEEP----------APHVKFILATTEVKKIPVTIISR---CQRFDLQKIPTDKLVEH 183 (491)
T ss_pred EEEEeChHhCCHHHHHHHHHHHhCC----------CCCeEEEEEeCChHHHHHHHHHh---heeeecccccHHHHHHH
Confidence 8999999877555677777777542 45566776664322 22222222 25678888887776544
No 46
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00022 Score=67.06 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=67.7
Q ss_pred ccccCCcchHHHHHHHhccccccc----------------------------CCCceEEEEeCCCCCHHHHHHHHHHhhc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIE----------------------------NFDKRIWVCVSDPFDEFRIAKAIIEGLE 178 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~----------------------------~F~~~~wv~vs~~~~~~~~~~~i~~~~~ 178 (297)
++|++|+||||+|+.+.+.-.-.. +++.. .+..+....+.++ +++.+.+.
T Consensus 43 f~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~-~~~~~~~~~id~I-r~l~~~~~ 120 (397)
T PRK14955 43 FSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDI-RLLRENVR 120 (397)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeE-eecccccCCHHHH-HHHHHHHh
Confidence 689999999999988876321111 22221 1222222334443 34555553
Q ss_pred CC---CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEecc-HHHHHHHHHhhCCCccccCCccc
Q 043781 179 GS---EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTC-QEKLRHLTLTLGLRAKFPVSIFD 254 (297)
Q Consensus 179 ~~---~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~-~~~~~~v~~~~~~~~~~~l~~l~ 254 (297)
.. +++-++|+|++.......++.|...+..- .+.+.+|++|.. ......+.... .++++.+++
T Consensus 121 ~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep----------~~~t~~Il~t~~~~kl~~tl~sR~---~~v~f~~l~ 187 (397)
T PRK14955 121 YGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP----------PPHAIFIFATTELHKIPATIASRC---QRFNFKRIP 187 (397)
T ss_pred hchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC----------CCCeEEEEEeCChHHhHHHHHHHH---HHhhcCCCC
Confidence 22 66778999999887555788887777642 445666655532 22222222221 456777777
Q ss_pred hhhhhh
Q 043781 255 AKKIWG 260 (297)
Q Consensus 255 ~~~lf~ 260 (297)
..++..
T Consensus 188 ~~ei~~ 193 (397)
T PRK14955 188 LEEIQQ 193 (397)
T ss_pred HHHHHH
Confidence 766644
No 47
>PRK08181 transposase; Validated
Probab=97.69 E-value=0.00012 Score=64.98 Aligned_cols=90 Identities=19% Similarity=0.087 Sum_probs=51.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTDD 195 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~~ 195 (297)
.-++|.+|+|||.||..+.+. .....-.++|+.+ .+++..+....... .+-=||||||+-...
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 458899999999999999873 3333333455543 34444332221111 345699999997654
Q ss_pred ccCHH--HHHHHHhhhhhhhceeeecCCCCeEEEEeccH
Q 043781 196 YSKWE--PFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ 232 (297)
Q Consensus 196 ~~~w~--~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~ 232 (297)
.+.|. .|-..+... -++ ..+||||...
T Consensus 181 ~~~~~~~~Lf~lin~R---------~~~-~s~IiTSN~~ 209 (269)
T PRK08181 181 KDQAETSVLFELISAR---------YER-RSILITANQP 209 (269)
T ss_pred CCHHHHHHHHHHHHHH---------HhC-CCEEEEcCCC
Confidence 33443 233333221 133 4688888643
No 48
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00016 Score=71.06 Aligned_cols=121 Identities=13% Similarity=0.117 Sum_probs=71.5
Q ss_pred ccccCCcchHHHHHHHhcccccc------------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC--
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI------------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~------------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-- 180 (297)
++|..|+||||+|+.+.+.-.-. ..|.-.+++..+.+.++.++ ++|++.+...
T Consensus 43 FtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdI-ReLie~~~~~P~ 121 (700)
T PRK12323 43 FTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEM-AQLLDKAVYAPT 121 (700)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHH-HHHHHHHHhchh
Confidence 67999999999998887632110 11222345555544455443 3444444322
Q ss_pred -CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccH-HHHHHHHHhhCCCccccCCccchhhh
Q 043781 181 -EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ-EKLRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 181 -~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~-~~~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
++.-++|||++.......++.|...|..- .....+|++|... .+...+... ...+.+..++..++
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEP----------P~~v~FILaTtep~kLlpTIrSR---Cq~f~f~~ls~eei 188 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEP----------PEHVKFILATTDPQKIPVTVLSR---CLQFNLKQMPPGHI 188 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccC----------CCCceEEEEeCChHhhhhHHHHH---HHhcccCCCChHHH
Confidence 67779999999988766777776666431 3455655555433 222222222 25678888877766
Q ss_pred hhh
Q 043781 259 WGW 261 (297)
Q Consensus 259 f~~ 261 (297)
..|
T Consensus 189 ~~~ 191 (700)
T PRK12323 189 VSH 191 (700)
T ss_pred HHH
Confidence 544
No 49
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00026 Score=68.52 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=73.1
Q ss_pred ccccCCcchHHHHHHHhcccccc-------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---CceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI-------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr~ 184 (297)
++|+.|+||||+|+.+.+.-.-. ..|.-.+.+..+....+.++ +++++.+... ++.-
T Consensus 43 f~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~p~~~~~k 121 (509)
T PRK14958 43 FTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYAPTKGRFK 121 (509)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhccccCCcE
Confidence 67999999999998888732111 12222445555555566664 4566655432 6777
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKIWG 260 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~lf~ 260 (297)
++|+|++.....+.++.|...+..- ...+++|++|.... ....+... ...+.+..++..++..
T Consensus 122 V~iIDE~~~ls~~a~naLLk~LEep----------p~~~~fIlattd~~kl~~tI~SR---c~~~~f~~l~~~~i~~ 185 (509)
T PRK14958 122 VYLIDEVHMLSGHSFNALLKTLEEP----------PSHVKFILATTDHHKLPVTVLSR---CLQFHLAQLPPLQIAA 185 (509)
T ss_pred EEEEEChHhcCHHHHHHHHHHHhcc----------CCCeEEEEEECChHhchHHHHHH---hhhhhcCCCCHHHHHH
Confidence 8999999987666777777777542 34566666654332 12122221 2456777777666544
No 50
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.63 E-value=0.00019 Score=65.74 Aligned_cols=73 Identities=23% Similarity=0.194 Sum_probs=42.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
.-++|++|+|||+||+.+.+. ....+ .++..+ .......+..++..+ ++.-+|++|++........+.+..
T Consensus 54 ~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l~~l---~~~~vl~IDEi~~l~~~~~e~l~~ 124 (328)
T PRK00080 54 VLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAILTNL---EEGDVLFIDEIHRLSPVVEEILYP 124 (328)
T ss_pred EEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHHHhc---ccCCEEEEecHhhcchHHHHHHHH
Confidence 348999999999999999984 33222 122221 122223344455544 356699999998754333334444
Q ss_pred HH
Q 043781 205 CL 206 (297)
Q Consensus 205 ~l 206 (297)
.+
T Consensus 125 ~~ 126 (328)
T PRK00080 125 AM 126 (328)
T ss_pred HH
Confidence 33
No 51
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.00028 Score=66.10 Aligned_cols=121 Identities=9% Similarity=-0.015 Sum_probs=69.3
Q ss_pred cccccCCcchHHHHHHHhccccc-------------------ccCCCceEEEE-eCCCCCHHHHHHHHHHhhcCC---Cc
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDV-------------------IENFDKRIWVC-VSDPFDEFRIAKAIIEGLEGS---EK 182 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~-------------------~~~F~~~~wv~-vs~~~~~~~~~~~i~~~~~~~---~k 182 (297)
=++|++|+|||++|+.+.+.-.- ..|.|.. ++. -.....+.+ .+++.+.+... ++
T Consensus 40 Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~-~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~ 117 (394)
T PRK07940 40 LFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVR-VVAPEGLSIGVDE-VRELVTIAARRPSTGR 117 (394)
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE-EeccccccCCHHH-HHHHHHHHHhCcccCC
Confidence 37899999999999888652111 1122222 232 223344444 33555544322 56
Q ss_pred eEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhC-CCccccCCccchhhhhhh
Q 043781 183 KFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLG-LRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 183 r~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~-~~~~~~l~~l~~~~lf~~ 261 (297)
+-++|+|++........+.|...+..- .++..+|++|.+.+ .+..+.- -...+++..++.+++..|
T Consensus 118 ~kViiIDead~m~~~aanaLLk~LEep----------~~~~~fIL~a~~~~---~llpTIrSRc~~i~f~~~~~~~i~~~ 184 (394)
T PRK07940 118 WRIVVIEDADRLTERAANALLKAVEEP----------PPRTVWLLCAPSPE---DVLPTIRSRCRHVALRTPSVEAVAEV 184 (394)
T ss_pred cEEEEEechhhcCHHHHHHHHHHhhcC----------CCCCeEEEEECChH---HChHHHHhhCeEEECCCCCHHHHHHH
Confidence 668888999888656666666666432 45666777666532 2222211 125778888887775444
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=97.59 E-value=0.00041 Score=66.92 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=61.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC----C-ceEEEEEeCCCCCCc---
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS----E-KKFFLILDDVWTDDY--- 196 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~----~-kr~LiVlDdv~~~~~--- 196 (297)
.-|+|++|+||||+|+.+++. .. |+ .+-++.+...+... +..++...... + ++-+||||++.....
T Consensus 42 lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~~-i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d 115 (482)
T PRK04195 42 LLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTADV-IERVAGEAATSGSLFGARRKLILLDEVDGIHGNED 115 (482)
T ss_pred EEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHHH-HHHHHHHhhccCcccCCCCeEEEEecCcccccccc
Confidence 347899999999999999984 31 22 23334454433333 33333222211 3 688999999987532
Q ss_pred -cCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HH-HHHHhhCCCccccCCccchhhh
Q 043781 197 -SKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LR-HLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 197 -~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~-~v~~~~~~~~~~~l~~l~~~~l 258 (297)
..+..|...+. ..+..||+|+..... .. .+. .....+.+..++..++
T Consensus 116 ~~~~~aL~~~l~------------~~~~~iIli~n~~~~~~~k~Lr---sr~~~I~f~~~~~~~i 165 (482)
T PRK04195 116 RGGARAILELIK------------KAKQPIILTANDPYDPSLRELR---NACLMIEFKRLSTRSI 165 (482)
T ss_pred hhHHHHHHHHHH------------cCCCCEEEeccCccccchhhHh---ccceEEEecCCCHHHH
Confidence 23445554443 344566776643211 11 111 1124556666665554
No 53
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.58 E-value=0.00019 Score=61.99 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=65.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccCC-C-ceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENF-D-KRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~ 193 (297)
.-|+|..|+|||.|.+.+++. ..+.. . .+++++ ..++...+...+... ..-=+|+|||+..
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~ 108 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQF 108 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGG
T ss_pred eEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchh
Confidence 458999999999999999994 43322 2 344553 445444444443221 4456899999987
Q ss_pred CCcc-CHHH-HHHHHhhhhhhhceeeecCCCCeEEEEeccH-H----HHHHHHHhhCCCccccCCccchhh
Q 043781 194 DDYS-KWEP-FHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ-E----KLRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 194 ~~~~-~w~~-l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~-~----~~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
.... .|+. +-..+... ...|.+||+|+... . ....+...+...-++++.+++.+.
T Consensus 109 l~~~~~~q~~lf~l~n~~---------~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 109 LAGKQRTQEELFHLFNRL---------IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp GTTHHHHHHHHHHHHHHH---------HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred hcCchHHHHHHHHHHHHH---------HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 5322 2333 33333222 15677999999532 1 234555665555667777776554
No 54
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00031 Score=69.22 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=70.5
Q ss_pred ccccCCcchHHHHHHHhccccc------------------------ccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC--
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV------------------------IENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~------------------------~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-- 180 (297)
++|..|+||||+|+.+.+.-.- .+.+.-.+++..+....+.++ +++++.+...
T Consensus 43 f~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~i-Reli~~~~~~p~ 121 (618)
T PRK14951 43 FTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEV-QQLLEQAVYKPV 121 (618)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHH-HHHHHHHHhCcc
Confidence 6799999999999988542110 011222344444444455443 4555554332
Q ss_pred -CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccH-HHHHHHHHhhCCCccccCCccchhhh
Q 043781 181 -EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ-EKLRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 181 -~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~-~~~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
++.=++|||++.....+.++.|...+..- .....+|++|... .+...+... ...+.+..++.+++
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP----------P~~~~fIL~Ttd~~kil~TIlSR---c~~~~f~~Ls~eei 188 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEP----------PEYLKFVLATTDPQKVPVTVLSR---CLQFNLRPMAPETV 188 (618)
T ss_pred cCCceEEEEEChhhCCHHHHHHHHHhcccC----------CCCeEEEEEECCchhhhHHHHHh---ceeeecCCCCHHHH
Confidence 56668999999988766777777666542 3445666665432 222222221 25678888877766
Q ss_pred hhh
Q 043781 259 WGW 261 (297)
Q Consensus 259 f~~ 261 (297)
..|
T Consensus 189 ~~~ 191 (618)
T PRK14951 189 LEH 191 (618)
T ss_pred HHH
Confidence 443
No 55
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00051 Score=66.87 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=69.2
Q ss_pred ccccCCcchHHHHHHHhcccccc-------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---CceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI-------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr~ 184 (297)
++|+.|+||||+|+.+.+.-... ..|.-.+++..+.+..+.+ ++++++.+... +++-
T Consensus 43 f~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~-ir~l~~~~~~~p~~~~~k 121 (527)
T PRK14969 43 FTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDA-MRELLDNAQYAPTRGRFK 121 (527)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHH-HHHHHHHHhhCcccCCce
Confidence 67999999999999887632111 1122234454444444444 34555544332 6778
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKIWG 260 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~lf~ 260 (297)
++|+|++.....+..+.|...+..- .....+|++|.+... ...+... ...+++..++..++..
T Consensus 122 VvIIDEad~ls~~a~naLLK~LEep----------p~~~~fIL~t~d~~kil~tI~SR---c~~~~f~~l~~~~i~~ 185 (527)
T PRK14969 122 VYIIDEVHMLSKSAFNAMLKTLEEP----------PEHVKFILATTDPQKIPVTVLSR---CLQFNLKQMPPPLIVS 185 (527)
T ss_pred EEEEcCcccCCHHHHHHHHHHHhCC----------CCCEEEEEEeCChhhCchhHHHH---HHHHhcCCCCHHHHHH
Confidence 9999999877555666676666542 344556665543321 1111111 1566777777666543
No 56
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.56 E-value=0.00029 Score=67.26 Aligned_cols=116 Identities=23% Similarity=0.249 Sum_probs=65.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCC--CceEEEEeCCCCCHHHHHHHHHHhhcCC-----------CceEEEEEeCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGS-----------EKKFFLILDDV 191 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~~~~~-----------~kr~LiVlDdv 191 (297)
.-|+|..|+|||+|++.+.+. +.... -.+++++ ..+++..+..++... .+.-+|||||+
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDi 215 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDV 215 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecc
Confidence 347899999999999999983 33221 1233443 334444444433320 33448999999
Q ss_pred CCCCc-cCH-HHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-H----HHHHHHhhCCCccccCCccchhh
Q 043781 192 WTDDY-SKW-EPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-K----LRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 192 ~~~~~-~~w-~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~----~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
..... ..| +.+...|... ...|..||+|+..+. . ..++...+...-+..+++++.++
T Consensus 216 q~l~~k~~~~e~lf~l~N~~---------~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 216 QFLSYKEKTNEIFFTIFNNF---------IENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred ccccCCHHHHHHHHHHHHHH---------HHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 76531 122 3344444332 145667888875431 1 23445555544566777776554
No 57
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.55 E-value=0.00031 Score=67.15 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=63.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCC--ceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFD--KRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~ 193 (297)
.-|+|.+|+|||+|++.+.+. +...+. ..++++. .++...+...+... .+--+|||||+..
T Consensus 151 l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~ 222 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQF 222 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhh
Confidence 347899999999999999994 444432 2345543 22233332222211 2344899999976
Q ss_pred CCccC-H-HHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-----HHHHHHHhhCCCccccCCccchhh
Q 043781 194 DDYSK-W-EPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-----KLRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 194 ~~~~~-w-~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-----~~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
..... + +.+-..|... ...|..||+||.... ....+...+....++.+++.+.+.
T Consensus 223 l~~~~~~~~~l~~~~n~l---------~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 223 LAGKERTQEEFFHTFNAL---------HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred hcCCHHHHHHHHHHHHHH---------HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 42111 2 2333333221 145566888876431 123344555444567777777655
No 58
>PRK06921 hypothetical protein; Provisional
Probab=97.55 E-value=0.00022 Score=63.40 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=51.1
Q ss_pred ccccccCCcchHHHHHHHhcccccccC-CCceEEEEeCCCCCH-HHH---HHHHHHhhcCCCceEEEEEeCCCC-----C
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIEN-FDKRIWVCVSDPFDE-FRI---AKAIIEGLEGSEKKFFLILDDVWT-----D 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~-~~~---~~~i~~~~~~~~kr~LiVlDdv~~-----~ 194 (297)
.-++|.+|+|||+||..+.+. +... --.+++++...-+.. ... ..+.+..+ .+-=||||||+.. .
T Consensus 120 l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~---~~~dlLiIDDl~~~~~g~e 194 (266)
T PRK06921 120 IALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRM---KKVEVLFIDDLFKPVNGKP 194 (266)
T ss_pred EEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHh---cCCCEEEEeccccccCCCc
Confidence 347899999999999999984 4333 234556654321110 000 11122222 3566999999933 2
Q ss_pred CccCHHH--HHHHHhhhhhhhceeeecCCCCeEEEEec
Q 043781 195 DYSKWEP--FHNCLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 195 ~~~~w~~--l~~~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
....|.. |-..+... ..++..+||||.
T Consensus 195 ~~t~~~~~~lf~iin~R---------~~~~k~tIitsn 223 (266)
T PRK06921 195 RATEWQIEQMYSVLNYR---------YLNHKPILISSE 223 (266)
T ss_pred cCCHHHHHHHHHHHHHH---------HHCCCCEEEECC
Confidence 2235653 43333321 134567888886
No 59
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.53 E-value=0.0012 Score=65.45 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.3
Q ss_pred cccccccCCcchHHHHHHHhcccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKD 147 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~ 147 (297)
..-|+|++|+||||||+.+++...
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhh
Confidence 456889999999999999988543
No 60
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00029 Score=69.73 Aligned_cols=119 Identities=15% Similarity=0.203 Sum_probs=71.0
Q ss_pred ccccCCcchHHHHHHHhccccccc-------------------CCCceEEEEeCCCCCHHHHHHHHHHhhcCC---CceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIE-------------------NFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr~ 184 (297)
++|..|+||||+|+.+.+.-.... .|.-.+.+..+....+.+ .++|++.+... +++-
T Consensus 43 f~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~K 121 (647)
T PRK07994 43 FSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVED-TRELLDNVQYAPARGRFK 121 (647)
T ss_pred EECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHH-HHHHHHHHHhhhhcCCCE
Confidence 679999999999998877421110 111123344433344444 34555554432 6777
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKIW 259 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~lf 259 (297)
++|||++.....+.++.|...+..- ....++|++|..... ...+-.+ ...+.+..++..++.
T Consensus 122 V~IIDEah~Ls~~a~NALLKtLEEP----------p~~v~FIL~Tt~~~kLl~TI~SR---C~~~~f~~Ls~~ei~ 184 (647)
T PRK07994 122 VYLIDEVHMLSRHSFNALLKTLEEP----------PEHVKFLLATTDPQKLPVTILSR---CLQFHLKALDVEQIR 184 (647)
T ss_pred EEEEechHhCCHHHHHHHHHHHHcC----------CCCeEEEEecCCccccchHHHhh---heEeeCCCCCHHHHH
Confidence 9999999988766788887777642 344555665554322 1222222 256788888776654
No 61
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00035 Score=71.19 Aligned_cols=119 Identities=12% Similarity=0.128 Sum_probs=70.2
Q ss_pred ccccCCcchHHHHHHHhcccccc----------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---C
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI----------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---E 181 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~----------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~ 181 (297)
++|..|+||||+|+.+.+.-.-. .+++ .+++.......+.++ ++|.+.+... +
T Consensus 42 f~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~eidaas~~~Vd~i-R~l~~~~~~~p~~~ 119 (824)
T PRK07764 42 FSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTEIDAASHGGVDDA-RELRERAFFAPAES 119 (824)
T ss_pred EECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEEecccccCCHHHH-HHHHHHHHhchhcC
Confidence 67999999999999887642211 1222 234444333344444 3343333221 5
Q ss_pred ceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhC-CCccccCCccchhhhhh
Q 043781 182 KKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLG-LRAKFPVSIFDAKKIWG 260 (297)
Q Consensus 182 kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~-~~~~~~l~~l~~~~lf~ 260 (297)
+.-++|||++.....+.++.|...+..- ...+.+|++|...+ .+...+. -..+|++..++..++..
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEp----------P~~~~fIl~tt~~~---kLl~TIrSRc~~v~F~~l~~~~l~~ 186 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEP----------PEHLKFIFATTEPD---KVIGTIRSRTHHYPFRLVPPEVMRG 186 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCC----------CCCeEEEEEeCChh---hhhHHHHhheeEEEeeCCCHHHHHH
Confidence 6667889999988767788888888652 45556666554332 2332211 12677888887666643
No 62
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00043 Score=68.59 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=67.1
Q ss_pred ccccCCcchHHHHHHHhcccccc-------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---CceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI-------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr~ 184 (297)
++|..|+||||+|+.+.+.-... ..|--.+.+..+....+. .++++++..... +++-
T Consensus 43 f~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd-~IRelle~a~~~P~~gk~K 121 (709)
T PRK08691 43 LTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGID-NIREVLENAQYAPTAGKYK 121 (709)
T ss_pred EECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHH-HHHHHHHHHHhhhhhCCcE
Confidence 78999999999999887631111 112122344444444443 345555543221 5677
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKIWG 260 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~lf~ 260 (297)
++|||++........+.|...+..- ....++|++|.... +...+... ...+.+..++..++..
T Consensus 122 VIIIDEad~Ls~~A~NALLKtLEEP----------p~~v~fILaTtd~~kL~~TIrSR---C~~f~f~~Ls~eeI~~ 185 (709)
T PRK08691 122 VYIIDEVHMLSKSAFNAMLKTLEEP----------PEHVKFILATTDPHKVPVTVLSR---CLQFVLRNMTAQQVAD 185 (709)
T ss_pred EEEEECccccCHHHHHHHHHHHHhC----------CCCcEEEEEeCCccccchHHHHH---HhhhhcCCCCHHHHHH
Confidence 9999999876544566666666542 34556666664332 11122111 1456667777666544
No 63
>PRK06526 transposase; Provisional
Probab=97.53 E-value=0.00021 Score=63.06 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=48.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTDD 195 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~~ 195 (297)
.-++|++|+|||+||..+.+.. .+..+. +.|+ +..+++..+....... .+.-||||||+....
T Consensus 101 lll~Gp~GtGKThLa~al~~~a-~~~g~~-v~f~------t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGIRA-CQAGHR-VLFA------TAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred EEEEeCCCCchHHHHHHHHHHH-HHCCCc-hhhh------hHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 3588999999999999988742 222232 2333 2333443332221110 345689999997653
Q ss_pred ccCHH-H-HHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 196 YSKWE-P-FHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 196 ~~~w~-~-l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
.+.|. . +-..+... .++++ +|+||..
T Consensus 173 ~~~~~~~~L~~li~~r---------~~~~s-~IitSn~ 200 (254)
T PRK06526 173 FEPEAANLFFQLVSSR---------YERAS-LIVTSNK 200 (254)
T ss_pred CCHHHHHHHHHHHHHH---------HhcCC-EEEEcCC
Confidence 23333 2 33333221 13444 8888864
No 64
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.51 E-value=0.00091 Score=60.58 Aligned_cols=119 Identities=14% Similarity=0.065 Sum_probs=61.5
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCc-eEEEEeCCCCCHH---HHHHHHHHhhcCC-CceEEEEEeCCCCCCccCHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDK-RIWVCVSDPFDEF---RIAKAIIEGLEGS-EKKFFLILDDVWTDDYSKWE 200 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~---~~~~~i~~~~~~~-~kr~LiVlDdv~~~~~~~w~ 200 (297)
-++|.+|+||||+++.+.+.- ....+.. .+-+..+...... +.+.++....... ..+-+|++|++.......++
T Consensus 42 ll~G~~G~GKt~~~~~l~~~l-~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~ 120 (319)
T PRK00440 42 LFAGPPGTGKTTAALALAREL-YGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQ 120 (319)
T ss_pred EEECCCCCCHHHHHHHHHHHH-cCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHH
Confidence 588999999999999998842 1112211 1112223332222 2223333222111 34668999999765433455
Q ss_pred HHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhh
Q 043781 201 PFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
.|...+... ...+.+|+++.... ....+.... ..+.+.+++..++
T Consensus 121 ~L~~~le~~----------~~~~~lIl~~~~~~~l~~~l~sr~---~~~~~~~l~~~ei 166 (319)
T PRK00440 121 ALRRTMEMY----------SQNTRFILSCNYSSKIIDPIQSRC---AVFRFSPLKKEAV 166 (319)
T ss_pred HHHHHHhcC----------CCCCeEEEEeCCccccchhHHHHh---heeeeCCCCHHHH
Confidence 566555432 34567777764321 122222222 3456666665554
No 65
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.00074 Score=66.11 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=68.0
Q ss_pred ccccCCcchHHHHHHHhcccccc--------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---Cce
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI--------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKK 183 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr 183 (297)
++|+.|+||||+|+.+.+.-.-. .|.+ ..++..+....+.++ +.+.+.+... +++
T Consensus 43 f~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D-iieIdaas~igVd~I-ReIi~~~~~~P~~~~~ 120 (605)
T PRK05896 43 FSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD-IVELDAASNNGVDEI-RNIIDNINYLPTTFKY 120 (605)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc-eEEeccccccCHHHH-HHHHHHHHhchhhCCc
Confidence 68999999999999887632111 1122 344544434444443 4444433322 444
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKIWG 260 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~lf~ 260 (297)
=++|+|++.....+.++.|...+..- .....+|++|..... ...+..+ ...+++..++..++..
T Consensus 121 KVIIIDEad~Lt~~A~NaLLKtLEEP----------p~~tvfIL~Tt~~~KLl~TI~SR---cq~ieF~~Ls~~eL~~ 185 (605)
T PRK05896 121 KVYIIDEAHMLSTSAWNALLKTLEEP----------PKHVVFIFATTEFQKIPLTIISR---CQRYNFKKLNNSELQE 185 (605)
T ss_pred EEEEEechHhCCHHHHHHHHHHHHhC----------CCcEEEEEECCChHhhhHHHHhh---hhhcccCCCCHHHHHH
Confidence 57999999887656777777777642 344555555543221 1122222 2567888887776543
No 66
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.49 E-value=0.00015 Score=62.64 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=56.3
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
.-++|..|+|||+||+.+++.. ..... ...+++.... ...+ ... ...-+||+||+.......-..|..
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~-~~~~~-~~~~i~~~~~------~~~~-~~~---~~~~~liiDdi~~l~~~~~~~L~~ 112 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADA-SYGGR-NARYLDAASP------LLAF-DFD---PEAELYAVDDVERLDDAQQIALFN 112 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HhCCC-cEEEEehHHh------HHHH-hhc---ccCCEEEEeChhhcCchHHHHHHH
Confidence 3588999999999999999842 12222 2334443221 1111 111 233479999997653222233444
Q ss_pred HHhhhhhhhceeeecCCCCe-EEEEeccHHHH----HHHHHhhCCCccccCCccchhh
Q 043781 205 CLMRVLQEFAAIEVDGDENP-LSLTSTCQEKL----RHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 205 ~l~~~~~~~~~~~~~~~gs~-iiiTTr~~~~~----~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
.+... ...+.. +|+|++..... ..+...+.....+.+.+++..+
T Consensus 113 ~~~~~---------~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 113 LFNRV---------RAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred HHHHH---------HHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 44332 134443 55555532211 2222233222455666666443
No 67
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.48 E-value=0.00057 Score=65.15 Aligned_cols=116 Identities=18% Similarity=0.201 Sum_probs=64.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccC-CC-ceEEEEeCCCCCHHHHHHHHHHhhcCC----------CceEEEEEeCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIEN-FD-KRIWVCVSDPFDEFRIAKAIIEGLEGS----------EKKFFLILDDVW 192 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~i~~~~~~~----------~kr~LiVlDdv~ 192 (297)
.-|+|.+|+|||+|++.+.+. +... .. .++|++. .+++.++...+... .+.-+|+|||+.
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~ 204 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQ 204 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechh
Confidence 458899999999999999994 4333 33 3445543 44555555444321 134589999997
Q ss_pred CCC-ccCH-HHHHHHHhhhhhhhceeeecCCCCeEEEEec-cHHHHHH----HHHhhCCCccccCCccchhh
Q 043781 193 TDD-YSKW-EPFHNCLMRVLQEFAAIEVDGDENPLSLTST-CQEKLRH----LTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 193 ~~~-~~~w-~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr-~~~~~~~----v~~~~~~~~~~~l~~l~~~~ 257 (297)
... ...+ +.+...+... ...|..||+||. .+..... +...+...-+..+++.+.+.
T Consensus 205 ~l~~~~~~q~elf~~~n~l---------~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 205 FLIGKTGVQTELFHTFNEL---------HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred hhcCcHHHHHHHHHHHHHH---------HHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 541 1112 2233333322 134567888874 3332222 33334333456677666543
No 68
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.48 E-value=0.00041 Score=65.42 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=61.3
Q ss_pred cccccCCcchHHHHHHHhcccccccCC--CceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTD 194 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~ 194 (297)
-|+|..|+|||+|++.+++. +.... -..++++. .++...+..++... .+.-+|||||+...
T Consensus 140 ~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l 211 (405)
T TIGR00362 140 FIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFL 211 (405)
T ss_pred EEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhh
Confidence 47899999999999999984 43332 23445543 33333333333211 22348999999864
Q ss_pred Ccc-CHH-HHHHHHhhhhhhhceeeecCCCCeEEEEeccH-HHH----HHHHHhhCCCccccCCccchhh
Q 043781 195 DYS-KWE-PFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ-EKL----RHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 195 ~~~-~w~-~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~-~~~----~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
... .+. .+-..+... ..+|..+|+|+... ... ..+...+....++.+.+.+.+.
T Consensus 212 ~~~~~~~~~l~~~~n~~---------~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 212 AGKERTQEEFFHTFNAL---------HENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLET 272 (405)
T ss_pred cCCHHHHHHHHHHHHHH---------HHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHH
Confidence 211 122 233333221 14556788887532 211 2233344333456666666554
No 69
>PRK08118 topology modulation protein; Reviewed
Probab=97.48 E-value=4.3e-05 Score=63.10 Aligned_cols=62 Identities=23% Similarity=0.432 Sum_probs=39.8
Q ss_pred ccccccCCcchHHHHHHHhcccccc-cCCCceEE----EEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVI-ENFDKRIW----VCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~w----v~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
+-|+|++|+||||||+.+++...+. -+||..+| ..+++. ....++++++. +.. .|+|+.+..
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~~-----~~~--wVidG~~~~ 70 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNELVK-----EDE--WIIDGNYGG 70 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHHhc-----CCC--EEEeCCcch
Confidence 5689999999999999999965443 45787774 444322 23334444433 233 578887553
No 70
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.48 E-value=0.00011 Score=69.43 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=55.3
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHH-----------------HHHhhcC-CCceEEEE
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA-----------------IIEGLEG-SEKKFFLI 187 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~-----------------i~~~~~~-~~kr~LiV 187 (297)
-++|++|+|||++|+.+++.......|+.+.||++++.++..+++.. ++..... +.+++++|
T Consensus 198 il~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vli 277 (459)
T PRK11331 198 ILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFI 277 (459)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEE
Confidence 46799999999999999986444557788889999887766665422 2222221 26789999
Q ss_pred EeCCCCCCccC-HHHHHHHH
Q 043781 188 LDDVWTDDYSK-WEPFHNCL 206 (297)
Q Consensus 188 lDdv~~~~~~~-w~~l~~~l 206 (297)
+|++...+.+. +-.+...+
T Consensus 278 IDEINRani~kiFGel~~lL 297 (459)
T PRK11331 278 IDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred EehhhccCHHHhhhhhhhhc
Confidence 99998775332 33444433
No 71
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.46 E-value=0.00028 Score=64.06 Aligned_cols=90 Identities=16% Similarity=0.080 Sum_probs=50.7
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHH---HHHHHHhhcCCCceEEEEEeCCCCC-CccCHHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRI---AKAIIEGLEGSEKKFFLILDDVWTD-DYSKWEPF 202 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~---~~~i~~~~~~~~kr~LiVlDdv~~~-~~~~w~~l 202 (297)
++|.+|+||||+|+.+++. .... ...++.+. .....+ +..........+.+-+||+|++... ..+....|
T Consensus 48 l~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L 121 (316)
T PHA02544 48 HSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHL 121 (316)
T ss_pred eeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHH
Confidence 4799999999999999883 3222 23344443 222222 2222222221135568999999765 22223345
Q ss_pred HHHHhhhhhhhceeeecCCCCeEEEEeccH
Q 043781 203 HNCLMRVLQEFAAIEVDGDENPLSLTSTCQ 232 (297)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~ 232 (297)
+..+... ..++++|+||...
T Consensus 122 ~~~le~~----------~~~~~~Ilt~n~~ 141 (316)
T PHA02544 122 RSFMEAY----------SKNCSFIITANNK 141 (316)
T ss_pred HHHHHhc----------CCCceEEEEcCCh
Confidence 4444432 4667888888643
No 72
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.46 E-value=0.00046 Score=62.59 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=54.7
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCCCc
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTDDY 196 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~~~ 196 (297)
-++|..|+|||.||..+++.. .+..+ .+.+++++ +++.++....... .+-=||||||+-....
T Consensus 160 ~L~G~~G~GKThLa~Aia~~l-~~~g~-~v~~~~~~------~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~ 231 (306)
T PRK08939 160 YLYGDFGVGKSYLLAAIANEL-AKKGV-SSTLLHFP------EFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQM 231 (306)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHcCC-CEEEEEHH------HHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccc
Confidence 478999999999999999952 23333 34556443 3334333332211 5677999999987765
Q ss_pred cCHHH--HHH-HHhhhhhhhceeeecCCCCeEEEEec
Q 043781 197 SKWEP--FHN-CLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 197 ~~w~~--l~~-~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
+.|.. +-. .+..- -.++-.+|+||.
T Consensus 232 s~~~~~~ll~~Il~~R---------~~~~~~ti~TSN 259 (306)
T PRK08939 232 SSWVRDEVLGVILQYR---------MQEELPTFFTSN 259 (306)
T ss_pred cHHHHHHHHHHHHHHH---------HHCCCeEEEECC
Confidence 67864 333 33211 035667888886
No 73
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.00063 Score=67.02 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=70.9
Q ss_pred ccccCCcchHHHHHHHhcccccccC------------------------CCceEEEEeCCCCCHHHHHHHHHHhhcCC--
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIEN------------------------FDKRIWVCVSDPFDEFRIAKAIIEGLEGS-- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~------------------------F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-- 180 (297)
++|+.|+||||+|+.+.+.-..... ..-.+++..+....+.++ ++|++.+...
T Consensus 51 ~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~I-ReIie~~~~~P~ 129 (598)
T PRK09111 51 LTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDI-REIIESVRYRPV 129 (598)
T ss_pred EECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHH-HHHHHHHHhchh
Confidence 7899999999999998773211110 011234443444445443 4565555432
Q ss_pred -CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEecc-HHHHHHHHHhhCCCccccCCccchhhh
Q 043781 181 -EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTC-QEKLRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 181 -~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~-~~~~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
+++=++|+|++........+.|...+..- ...+.+|++|.. ..+...+... ...+.+..++..++
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~naLLKtLEeP----------p~~~~fIl~tte~~kll~tI~SR---cq~~~f~~l~~~el 196 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAFNALLKTLEEP----------PPHVKFIFATTEIRKVPVTVLSR---CQRFDLRRIEADVL 196 (598)
T ss_pred cCCcEEEEEEChHhCCHHHHHHHHHHHHhC----------CCCeEEEEEeCChhhhhHHHHhh---eeEEEecCCCHHHH
Confidence 56668999999877655677777777652 455666665532 2222222111 25677888877776
Q ss_pred hhh
Q 043781 259 WGW 261 (297)
Q Consensus 259 f~~ 261 (297)
..|
T Consensus 197 ~~~ 199 (598)
T PRK09111 197 AAH 199 (598)
T ss_pred HHH
Confidence 554
No 74
>PRK09183 transposase/IS protein; Provisional
Probab=97.42 E-value=0.00053 Score=60.72 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|.+|+|||+||..+.+.
T Consensus 105 v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 458899999999999999763
No 75
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.42 E-value=0.00061 Score=66.77 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=65.9
Q ss_pred cccccCCcchHHHHHHHhcccccccCC--CceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTD 194 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~ 194 (297)
-|||..|+|||.|++.+.+. ....+ -.+++++ ..+++.++...+... .+-=||||||+...
T Consensus 318 ~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l 389 (617)
T PRK14086 318 FIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFL 389 (617)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccc
Confidence 47899999999999999994 43322 1334553 334444443333221 12238999999875
Q ss_pred Cc-cCHHH-HHHHHhhhhhhhceeeecCCCCeEEEEeccH-----HHHHHHHHhhCCCccccCCccchhh
Q 043781 195 DY-SKWEP-FHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ-----EKLRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 195 ~~-~~w~~-l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~-----~~~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
.. ..|+. |-..|... ..+|..|||||... .....+...+...-++.|...+.+.
T Consensus 390 ~gke~tqeeLF~l~N~l---------~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 390 EDKESTQEEFFHTFNTL---------HNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELET 450 (617)
T ss_pred cCCHHHHHHHHHHHHHH---------HhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHH
Confidence 32 23332 33333221 15567799988753 1234455566555667777776543
No 76
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.41 E-value=0.00062 Score=59.64 Aligned_cols=86 Identities=19% Similarity=0.305 Sum_probs=51.7
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHH--------------HHHHhhcCCCceEEEEEeCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK--------------AIIEGLEGSEKKFFLILDDV 191 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~--------------~i~~~~~~~~kr~LiVlDdv 191 (297)
-++|.+|+|||+||..+.+. ....-..++++++ .+++. .+++.+ .+-=||||||+
T Consensus 103 ~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~~~~~~~~~l~~l---~~~dlLvIDDi 171 (244)
T PRK07952 103 IFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSNSETSEEQLLNDL---SNVDLLVIDEI 171 (244)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhhccccHHHHHHHh---ccCCEEEEeCC
Confidence 47899999999999999984 3222234455543 23322 223332 34558999999
Q ss_pred CCCCccCHHH--HHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 192 WTDDYSKWEP--FHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 192 ~~~~~~~w~~--l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
-......|.. +-..+..- .++.-.+||||..
T Consensus 172 g~~~~s~~~~~~l~~Ii~~R---------y~~~~~tiitSNl 204 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRR---------SSSKRPTGMLTNS 204 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHH---------HhCCCCEEEeCCC
Confidence 8876566764 32333211 1345667888763
No 77
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0012 Score=65.40 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=68.1
Q ss_pred ccccCCcchHHHHHHHhcccccc----------------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI----------------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLE 178 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~----------------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~ 178 (297)
++|+.|+||||+|+.+.+.-... .||+...+ .......+.++. ++.+.+.
T Consensus 43 f~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~-d~~s~~~vd~Ir-~l~e~~~ 120 (620)
T PRK14954 43 FSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEF-DAASNNSVDDIR-QLRENVR 120 (620)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEe-cccccCCHHHHH-HHHHHHH
Confidence 67999999999998877632111 12332222 222233344443 4455553
Q ss_pred CC---CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCCccccCCccc
Q 043781 179 GS---EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLRAKFPVSIFD 254 (297)
Q Consensus 179 ~~---~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~~~~~l~~l~ 254 (297)
.. +++-++|+|++.......++.|...+..- ...+.+|++|... ..+... ..-..++++..++
T Consensus 121 ~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP----------p~~tv~IL~t~~~---~kLl~TI~SRc~~vef~~l~ 187 (620)
T PRK14954 121 YGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP----------PPHAIFIFATTEL---HKIPATIASRCQRFNFKRIP 187 (620)
T ss_pred hhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC----------CCCeEEEEEeCCh---hhhhHHHHhhceEEecCCCC
Confidence 22 56668999999877545677777777542 3345555555322 233322 1122677888888
Q ss_pred hhhhhhh
Q 043781 255 AKKIWGW 261 (297)
Q Consensus 255 ~~~lf~~ 261 (297)
..++..|
T Consensus 188 ~~ei~~~ 194 (620)
T PRK14954 188 LDEIQSQ 194 (620)
T ss_pred HHHHHHH
Confidence 7776443
No 78
>PHA00729 NTP-binding motif containing protein
Probab=97.39 E-value=0.0013 Score=56.67 Aligned_cols=65 Identities=26% Similarity=0.338 Sum_probs=36.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCC-----ceEEEEe--CCCCCHHHHHHHHHHhhcCCCceEEEEEeCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFD-----KRIWVCV--SDPFDEFRIAKAIIEGLEGSEKKFFLILDDV 191 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~-----~~~wv~v--s~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv 191 (297)
+-|+|.+|+||||||..+.+. +..++. ...|-.. ..-++..+++..|........+-=|||+||+
T Consensus 20 IlItG~pGvGKT~LA~aLa~~--l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~ 91 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARD--VFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDA 91 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 468899999999999999884 210000 0111100 0112566666666554433211138999993
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.00077 Score=64.29 Aligned_cols=119 Identities=13% Similarity=0.057 Sum_probs=64.9
Q ss_pred cccccCCcchHHHHHHHhcccccccC--C-----------------CceEEEEeCCCCCHHHHHHHHHHhhcCC---Cce
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIEN--F-----------------DKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKK 183 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~--F-----------------~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr 183 (297)
=++|+.|+||||+|+.+.+.-.-... + .-.+-+..+.+.++.+ .+++.+.+... ++.
T Consensus 44 Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~ 122 (484)
T PRK14956 44 IFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIEN-IRELRDNVKFAPMGGKY 122 (484)
T ss_pred EEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHH-HHHHHHHHHhhhhcCCC
Confidence 37899999999999999873211100 0 0011222222333332 34444443321 567
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccH-HHHHHHHHhhCCCccccCCccchhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ-EKLRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~-~~~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
-++|+|++.....+.++.|...+..- .....+|++|... .+...+..+. ..|.+..++..++
T Consensus 123 KV~IIDEah~Ls~~A~NALLKtLEEP----------p~~viFILaTte~~kI~~TI~SRC---q~~~f~~ls~~~i 185 (484)
T PRK14956 123 KVYIIDEVHMLTDQSFNALLKTLEEP----------PAHIVFILATTEFHKIPETILSRC---QDFIFKKVPLSVL 185 (484)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcC----------CCceEEEeecCChhhccHHHHhhh---heeeecCCCHHHH
Confidence 79999999988767788887777531 2344445455432 2222222221 4567777765544
No 80
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.39 E-value=0.0013 Score=50.99 Aligned_cols=68 Identities=22% Similarity=0.073 Sum_probs=41.0
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-------------------CHHHHHHHHHHhhcCCCceEE
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-------------------DEFRIAKAIIEGLEGSEKKFF 185 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------------------~~~~~~~~i~~~~~~~~kr~L 185 (297)
.-|+|++|+||||+++.+... ........+++..+... ........++..... .+..+
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 81 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK-LKPDV 81 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh-cCCCE
Confidence 357899999999999999984 33322234445433221 122233333333332 22499
Q ss_pred EEEeCCCCCC
Q 043781 186 LILDDVWTDD 195 (297)
Q Consensus 186 iVlDdv~~~~ 195 (297)
|++|++....
T Consensus 82 iiiDei~~~~ 91 (148)
T smart00382 82 LILDEITSLL 91 (148)
T ss_pred EEEECCcccC
Confidence 9999998874
No 81
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.39 E-value=0.00018 Score=60.07 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=39.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTDD 195 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~~ 195 (297)
.-++|.+|+|||.||..+.+. -+...+ .+.|+. ..+++..+-..-... .+-=||||||+-...
T Consensus 50 l~l~G~~G~GKThLa~ai~~~-~~~~g~-~v~f~~------~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANE-AIRKGY-SVLFIT------ASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEP 121 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHH-HHHTT---EEEEE------HHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS-
T ss_pred EEEEhhHhHHHHHHHHHHHHH-hccCCc-ceeEee------cCceeccccccccccchhhhcCccccccEecccccceee
Confidence 347899999999999999874 223333 345564 334444433222111 345688999998765
Q ss_pred ccCHH
Q 043781 196 YSKWE 200 (297)
Q Consensus 196 ~~~w~ 200 (297)
.+.|.
T Consensus 122 ~~~~~ 126 (178)
T PF01695_consen 122 LSEWE 126 (178)
T ss_dssp --HHH
T ss_pred ecccc
Confidence 44554
No 82
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00063 Score=63.15 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=77.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCC-c-eEEEEeCCCCCHHHHHHHHHHhhcCC---------------------C
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFD-K-RIWVCVSDPFDEFRIAKAIIEGLEGS---------------------E 181 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~~i~~~~~~~---------------------~ 181 (297)
.-|+|.+|+|||+.++.+.+ ++.+... . .++|+.-......+++..|+++++.. +
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred EEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcC
Confidence 45889999999999999999 4544432 2 68888888888999999999988532 8
Q ss_pred ceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEE--eccHHH----HHHHHHhhCCCccccCCccch
Q 043781 182 KKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLT--STCQEK----LRHLTLTLGLRAKFPVSIFDA 255 (297)
Q Consensus 182 kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiT--Tr~~~~----~~~v~~~~~~~~~~~l~~l~~ 255 (297)
+.++||||++..-....- .+...|.+.. +.+.++|++- +-.... ...+...++..+ +...+-++
T Consensus 123 ~~~IvvLDEid~L~~~~~-~~LY~L~r~~--------~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~-I~F~pY~a 192 (366)
T COG1474 123 KTVIVILDEVDALVDKDG-EVLYSLLRAP--------GENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSE-IVFPPYTA 192 (366)
T ss_pred CeEEEEEcchhhhccccc-hHHHHHHhhc--------cccceeEEEEEEeccHHHHHHhhhhhhhccCcce-eeeCCCCH
Confidence 899999999987522111 3333343321 1234544332 322211 223334455444 56667777
Q ss_pred hhhh
Q 043781 256 KKIW 259 (297)
Q Consensus 256 ~~lf 259 (297)
.||.
T Consensus 193 ~el~ 196 (366)
T COG1474 193 EELY 196 (366)
T ss_pred HHHH
Confidence 7764
No 83
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0018 Score=63.73 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=66.4
Q ss_pred ccccCCcchHHHHHHHhccccccc--------------------CCCceEEEEeCCCCCHHHHHHHHHHhhcC---CCce
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIE--------------------NFDKRIWVCVSDPFDEFRIAKAIIEGLEG---SEKK 183 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs~~~~~~~~~~~i~~~~~~---~~kr 183 (297)
++|+.|+||||+|+.+.+.-.-.. |.| .+++..+....+.++ +.|.+.+.. .+++
T Consensus 43 f~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD-v~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~ 120 (624)
T PRK14959 43 FSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD-VVEIDGASNRGIDDA-KRLKEAIGYAPMEGRY 120 (624)
T ss_pred EECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc-eEEEecccccCHHHH-HHHHHHHHhhhhcCCc
Confidence 579999999999998887422111 111 334443333344432 334333332 2667
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKIW 259 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~lf 259 (297)
-+||||++.......++.|...+..- .....+|++|.... ....+.... ..+++..++..++.
T Consensus 121 kVIIIDEad~Lt~~a~naLLk~LEEP----------~~~~ifILaTt~~~kll~TI~SRc---q~i~F~pLs~~eL~ 184 (624)
T PRK14959 121 KVFIIDEAHMLTREAFNALLKTLEEP----------PARVTFVLATTEPHKFPVTIVSRC---QHFTFTRLSEAGLE 184 (624)
T ss_pred eEEEEEChHhCCHHHHHHHHHHhhcc----------CCCEEEEEecCChhhhhHHHHhhh---hccccCCCCHHHHH
Confidence 79999999887655667776666431 33455666555332 222222221 45678888766653
No 84
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.36 E-value=0.00042 Score=64.99 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=38.0
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC----C-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP----F-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~----~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
-++|++|+|||+||+.+++. ....| +.+..+.- . ......+.++..... ....+|+||++..
T Consensus 169 LL~GppGtGKT~lAkaia~~--~~~~~---i~v~~~~l~~~~~g~~~~~i~~~f~~a~~-~~p~IlfiDEiD~ 235 (389)
T PRK03992 169 LLYGPPGTGKTLLAKAVAHE--TNATF---IRVVGSELVQKFIGEGARLVRELFELARE-KAPSIIFIDEIDA 235 (389)
T ss_pred EEECCCCCChHHHHHHHHHH--hCCCE---EEeehHHHhHhhccchHHHHHHHHHHHHh-cCCeEEEEechhh
Confidence 46899999999999999983 33332 11111110 0 123445555554433 4578999999975
No 85
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0016 Score=64.04 Aligned_cols=120 Identities=10% Similarity=0.116 Sum_probs=69.2
Q ss_pred ccccCCcchHHHHHHHhcccccc----------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---C
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI----------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---E 181 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~----------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~ 181 (297)
++|+.|+||||+|+.+.+.-.-. .+.+ ++.+..+....+.++ ++|.+.+... +
T Consensus 40 f~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d-vieidaas~~gvd~i-Rel~~~~~~~P~~~ 117 (584)
T PRK14952 40 FSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID-VVELDAASHGGVDDT-RELRDRAFYAPAQS 117 (584)
T ss_pred EECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce-EEEeccccccCHHHH-HHHHHHHHhhhhcC
Confidence 67999999999999888732110 1122 234444433344443 4444443221 5
Q ss_pred ceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccH-HHHHHHHHhhCCCccccCCccchhhhhh
Q 043781 182 KKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ-EKLRHLTLTLGLRAKFPVSIFDAKKIWG 260 (297)
Q Consensus 182 kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~-~~~~~v~~~~~~~~~~~l~~l~~~~lf~ 260 (297)
++=++|+|++.....+..+.|...+..- .....+|++|... .+...+... ...+.+..++..++..
T Consensus 118 ~~KVvIIDEah~Lt~~A~NALLK~LEEp----------p~~~~fIL~tte~~kll~TI~SR---c~~~~F~~l~~~~i~~ 184 (584)
T PRK14952 118 RYRIFIVDEAHMVTTAGFNALLKIVEEP----------PEHLIFIFATTEPEKVLPTIRSR---THHYPFRLLPPRTMRA 184 (584)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHhcC----------CCCeEEEEEeCChHhhHHHHHHh---ceEEEeeCCCHHHHHH
Confidence 6668999999887666777787777652 3455555555432 222222222 2567777777666544
Q ss_pred h
Q 043781 261 W 261 (297)
Q Consensus 261 ~ 261 (297)
|
T Consensus 185 ~ 185 (584)
T PRK14952 185 L 185 (584)
T ss_pred H
Confidence 3
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.33 E-value=0.0022 Score=59.11 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=63.6
Q ss_pred ccccCCcchHHHHHHHhcccccc--------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---Cce
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI--------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKK 183 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr 183 (297)
++|++|+||||+|+.+...-.-. .+++. +++..+....... .+++++.+... +++
T Consensus 41 l~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~p~~~~~ 118 (355)
T TIGR02397 41 FSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDAASNNGVDD-IREILDNVKYAPSSGKY 118 (355)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeeccccCCHHH-HHHHHHHHhcCcccCCc
Confidence 68999999999998887631100 13333 3443332233222 33344433221 566
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKIW 259 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~lf 259 (297)
-++|+|++.......++.+...+... ...+.+|++|..... ...+... ...+.+.+++..++.
T Consensus 119 ~vviidea~~l~~~~~~~Ll~~le~~----------~~~~~lIl~~~~~~~l~~~l~sr---~~~~~~~~~~~~~l~ 182 (355)
T TIGR02397 119 KVYIIDEVHMLSKSAFNALLKTLEEP----------PEHVVFILATTEPHKIPATILSR---CQRFDFKRIPLEDIV 182 (355)
T ss_pred eEEEEeChhhcCHHHHHHHHHHHhCC----------ccceeEEEEeCCHHHHHHHHHhh---eeEEEcCCCCHHHHH
Confidence 68999999765434556666555431 345566667654332 2222222 145566677666653
No 87
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.32 E-value=0.00059 Score=65.78 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=39.6
Q ss_pred ccccCCcchHHHHHHHhcccccccC-----CCceEEEEeCCCC-------CHHHHHHHHHHhhcC---CCceEEEEEeCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIEN-----FDKRIWVCVSDPF-------DEFRIAKAIIEGLEG---SEKKFFLILDDV 191 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~-------~~~~~~~~i~~~~~~---~~kr~LiVlDdv 191 (297)
++|++|+|||++|+.+++. +..+ +....++.+.... .....++.++..... .+++.+|+||++
T Consensus 221 LyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEi 298 (512)
T TIGR03689 221 LYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEM 298 (512)
T ss_pred EECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehh
Confidence 6899999999999999994 3332 2233444433211 112233344333322 257899999999
Q ss_pred CC
Q 043781 192 WT 193 (297)
Q Consensus 192 ~~ 193 (297)
..
T Consensus 299 D~ 300 (512)
T TIGR03689 299 DS 300 (512)
T ss_pred hh
Confidence 75
No 88
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.31 E-value=0.00082 Score=61.50 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=51.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHH--------------HHhhcCCCceEEEEEeC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI--------------IEGLEGSEKKFFLILDD 190 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--------------~~~~~~~~kr~LiVlDd 190 (297)
.-++|.+|+|||+||..+.+. +...--.+++++++ +++..+ +..+ .+-=||||||
T Consensus 186 Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~~~~~~~~~~~~l---~~~DLLIIDD 254 (329)
T PRK06835 186 LLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFNNDKELEEVYDLL---INCDLLIIDD 254 (329)
T ss_pred EEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhccchhHHHHHHHh---ccCCEEEEec
Confidence 347899999999999999984 32222245566543 222222 1221 2345899999
Q ss_pred CCCCCccCHHH--HHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 191 VWTDDYSKWEP--FHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 191 v~~~~~~~w~~--l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
+-......|.. |-..+... -.++..+||||..
T Consensus 255 lG~e~~t~~~~~~Lf~iin~R---------~~~~k~tIiTSNl 288 (329)
T PRK06835 255 LGTEKITEFSKSELFNLINKR---------LLRQKKMIISTNL 288 (329)
T ss_pred cCCCCCCHHHHHHHHHHHHHH---------HHCCCCEEEECCC
Confidence 97764445543 33333221 1445678888863
No 89
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0012 Score=61.38 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=62.4
Q ss_pred ccccCCcchHHHHHHHhccccc------ccCCCceE-EEEeCCCCCHHHHHHHHHHhhcC-C--CceEEEEEeCCCCCCc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV------IENFDKRI-WVCVSDPFDEFRIAKAIIEGLEG-S--EKKFFLILDDVWTDDY 196 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~~~~~~i~~~~~~-~--~kr~LiVlDdv~~~~~ 196 (297)
++|++|+||||+|+.+.+.-.- ...|...+ -+......+..+ ..++++.+.. + +++-++++|++.....
T Consensus 44 ~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~l~~~~~~~p~~~~~kiviIDE~~~l~~ 122 (367)
T PRK14970 44 FCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRNLIDQVRIPPQTGKYKIYIIDEVHMLSS 122 (367)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHHHHHHHhhccccCCcEEEEEeChhhcCH
Confidence 7899999999999998773211 11222222 122222222333 3344443321 1 5666899999976543
Q ss_pred cCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhhhh
Q 043781 197 SKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKIWG 260 (297)
Q Consensus 197 ~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~lf~ 260 (297)
..++.+...+... ...+.+|++|.... ....+... ...+++..++..++..
T Consensus 123 ~~~~~ll~~le~~----------~~~~~~Il~~~~~~kl~~~l~sr---~~~v~~~~~~~~~l~~ 174 (367)
T PRK14970 123 AAFNAFLKTLEEP----------PAHAIFILATTEKHKIIPTILSR---CQIFDFKRITIKDIKE 174 (367)
T ss_pred HHHHHHHHHHhCC----------CCceEEEEEeCCcccCCHHHHhc---ceeEecCCccHHHHHH
Confidence 4566665555431 33455665553221 11222211 2456777777666543
No 90
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0032 Score=60.76 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=66.1
Q ss_pred ccccCCcchHHHHHHHhccccc-------------------ccCCCceEEEEeCCCCCHHHHHHHHHHhhc---CCCceE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV-------------------IENFDKRIWVCVSDPFDEFRIAKAIIEGLE---GSEKKF 184 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~-------------------~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~---~~~kr~ 184 (297)
++|+.|+||||+|+.+...-.- ...|.-...+..+.+..+.++ +.|.+.+. ..+++-
T Consensus 43 f~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~i-r~I~~~~~~~P~~~~~K 121 (486)
T PRK14953 43 FAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDI-RALRDAVSYTPIKGKYK 121 (486)
T ss_pred EECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHH-HHHHHHHHhCcccCCee
Confidence 6899999999999987763110 011222334444443444332 33433332 226778
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhhhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~lf~~ 261 (297)
++|+|++.......++.|...+..- .+...+|++|.... ....+... ...+.+.+++..++..|
T Consensus 122 VvIIDEad~Lt~~a~naLLk~LEep----------p~~~v~Il~tt~~~kl~~tI~SR---c~~i~f~~ls~~el~~~ 186 (486)
T PRK14953 122 VYIIDEAHMLTKEAFNALLKTLEEP----------PPRTIFILCTTEYDKIPPTILSR---CQRFIFSKPTKEQIKEY 186 (486)
T ss_pred EEEEEChhhcCHHHHHHHHHHHhcC----------CCCeEEEEEECCHHHHHHHHHHh---ceEEEcCCCCHHHHHHH
Confidence 9999999876544566666666431 33455555553322 11222211 24567778877766443
No 91
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.24 E-value=0.0018 Score=65.54 Aligned_cols=68 Identities=15% Similarity=0.072 Sum_probs=44.1
Q ss_pred ccccCCcchHHHHHHHhccccc---ccCCC--ceEEEEeCCCCCHHHHHHHHHHhhcCC---------------------
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV---IENFD--KRIWVCVSDPFDEFRIAKAIIEGLEGS--------------------- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~~~~i~~~~~~~--------------------- 180 (297)
|+|++|.|||++++.|.+.-.- +.... ..++|....-.+...++..|+.++...
T Consensus 786 IyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k 865 (1164)
T PTZ00112 786 ISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK 865 (1164)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc
Confidence 6899999999999999874211 11111 245666555455666666666666221
Q ss_pred --CceEEEEEeCCCCC
Q 043781 181 --EKKFFLILDDVWTD 194 (297)
Q Consensus 181 --~kr~LiVlDdv~~~ 194 (297)
....+||||+|..-
T Consensus 866 ~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 866 DNRNVSILIIDEIDYL 881 (1164)
T ss_pred ccccceEEEeehHhhh
Confidence 23469999999765
No 92
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.20 E-value=0.00045 Score=58.78 Aligned_cols=94 Identities=29% Similarity=0.294 Sum_probs=51.6
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEE--eC--CC--C---CHH-------HHHHHHHHhhcCC-------
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC--VS--DP--F---DEF-------RIAKAIIEGLEGS------- 180 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~--vs--~~--~---~~~-------~~~~~i~~~~~~~------- 180 (297)
.+.+.|++|.|||.||....-+.-...+|+..+++. ++ +. | +.. .-+.+.+..+...
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~ 100 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEELI 100 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHHh
Confidence 345679999999999987776544457788777773 11 11 0 111 1122233332211
Q ss_pred -----------------CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEec
Q 043781 181 -----------------EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 181 -----------------~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
=..-+||+|++.+. .-++++..+.+. +.||++|++=-
T Consensus 101 ~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~---t~~~~k~ilTR~----------g~~skii~~GD 154 (205)
T PF02562_consen 101 QNGKIEIEPLAFIRGRTFDNAFIIVDEAQNL---TPEELKMILTRI----------GEGSKIIITGD 154 (205)
T ss_dssp HTTSEEEEEGGGGTT--B-SEEEEE-SGGG-----HHHHHHHHTTB-----------TT-EEEEEE-
T ss_pred hcCeEEEEehhhhcCccccceEEEEecccCC---CHHHHHHHHccc----------CCCcEEEEecC
Confidence 23468999999887 455677778886 89999999864
No 93
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.0022 Score=63.55 Aligned_cols=120 Identities=17% Similarity=0.136 Sum_probs=70.8
Q ss_pred ccccCCcchHHHHHHHhcccc---------------------cccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---Cc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKD---------------------VIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EK 182 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~---------------------~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~k 182 (297)
++|..|+||||+|+.+...-. ...+|+.. .+..+...++.++. +++.++... ++
T Consensus 44 f~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~ld~~~~~~vd~Ir-~li~~~~~~P~~~~ 121 (614)
T PRK14971 44 FCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-ELDAASNNSVDDIR-NLIEQVRIPPQIGK 121 (614)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-EecccccCCHHHHH-HHHHHHhhCcccCC
Confidence 679999999999988766311 11245532 33444444444444 344443322 56
Q ss_pred eEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEe-ccHHHHHHHHHhhCCCccccCCccchhhhhhh
Q 043781 183 KFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTS-TCQEKLRHLTLTLGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 183 r~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTT-r~~~~~~~v~~~~~~~~~~~l~~l~~~~lf~~ 261 (297)
+=++|+|++.....+.++.|...+..- ...+.+|++| ....+...+-.. ..++++..++.+++..|
T Consensus 122 ~KVvIIdea~~Ls~~a~naLLK~LEep----------p~~tifIL~tt~~~kIl~tI~SR---c~iv~f~~ls~~ei~~~ 188 (614)
T PRK14971 122 YKIYIIDEVHMLSQAAFNAFLKTLEEP----------PSYAIFILATTEKHKILPTILSR---CQIFDFNRIQVADIVNH 188 (614)
T ss_pred cEEEEEECcccCCHHHHHHHHHHHhCC----------CCCeEEEEEeCCchhchHHHHhh---hheeecCCCCHHHHHHH
Confidence 668899999887656777788877652 3456665555 322222222222 25678888877776443
No 94
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.18 E-value=0.00065 Score=63.81 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=37.9
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CC-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PF-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
-++|++|+|||+||+.+.+. ....| +.+..+. .. .....+++++..... ..+.+|+||++..
T Consensus 183 LL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s~l~~k~~ge~~~~lr~lf~~A~~-~~P~ILfIDEID~ 249 (398)
T PTZ00454 183 LLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGSEFVQKYLGEGPRMVRDVFRLARE-NAPSIIFIDEVDS 249 (398)
T ss_pred EEECCCCCCHHHHHHHHHHh--cCCCE---EEEehHHHHHHhcchhHHHHHHHHHHHHh-cCCeEEEEECHhh
Confidence 47899999999999999984 33333 1221111 00 112344455544333 5778999999864
No 95
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.18 E-value=0.00076 Score=58.73 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=27.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEe
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV 160 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v 160 (297)
..|+|..|+|||||...+.. ...+.|..+++++-
T Consensus 16 ~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred EEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 45899999999999999887 47778877777643
No 96
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.18 E-value=0.0034 Score=60.95 Aligned_cols=120 Identities=17% Similarity=0.106 Sum_probs=69.8
Q ss_pred ccccCCcchHHHHHHHhccccc---c-----------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcC-C--Cce
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV---I-----------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEG-S--EKK 183 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~---~-----------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~-~--~kr 183 (297)
++|..|+||||+|+.+.+.--- . .|++ .+.+..+....+.++. +++..... + +++
T Consensus 41 f~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eldaas~~gId~IR-elie~~~~~P~~~~~ 118 (535)
T PRK08451 41 FSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMDAASNRGIDDIR-ELIEQTKYKPSMARF 118 (535)
T ss_pred EECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEeccccccCHHHHH-HHHHHHhhCcccCCe
Confidence 6899999999999977663100 0 1122 2333333333454444 34343321 1 667
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhhhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~lf~~ 261 (297)
=++|+|++.....+..+.|...+..- ...+.+|++|..... ...+..+ ...+.+.+++..++..|
T Consensus 119 KVvIIDEad~Lt~~A~NALLK~LEEp----------p~~t~FIL~ttd~~kL~~tI~SR---c~~~~F~~Ls~~ei~~~ 184 (535)
T PRK08451 119 KIFIIDEVHMLTKEAFNALLKTLEEP----------PSYVKFILATTDPLKLPATILSR---TQHFRFKQIPQNSIISH 184 (535)
T ss_pred EEEEEECcccCCHHHHHHHHHHHhhc----------CCceEEEEEECChhhCchHHHhh---ceeEEcCCCCHHHHHHH
Confidence 79999999887666777777777542 455666766654321 1222222 25678888877776544
No 97
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.17 E-value=0.00018 Score=57.09 Aligned_cols=76 Identities=22% Similarity=0.101 Sum_probs=49.8
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC-----------CceEEEEEeCCCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----------EKKFFLILDDVWTDD 195 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-----------~kr~LiVlDdv~~~~ 195 (297)
++|.+|+|||+||+.+++. ... ...-+.++...+..+++...--.-+.. .+..++|||++...+
T Consensus 4 L~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 4 LVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred EECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC
Confidence 7899999999999999983 321 223456777777777765432111111 589999999998765
Q ss_pred ccCHHHHHHHHh
Q 043781 196 YSKWEPFHNCLM 207 (297)
Q Consensus 196 ~~~w~~l~~~l~ 207 (297)
.+.+..|...+.
T Consensus 79 ~~v~~~L~~ll~ 90 (139)
T PF07728_consen 79 PEVLESLLSLLE 90 (139)
T ss_dssp HHHHHTTHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 556666766664
No 98
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.14 E-value=0.00042 Score=59.36 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-|+|+.|+|||+|++.+.+.
T Consensus 23 ~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 23 ILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCcCCHHHHHHHHHHH
Confidence 458899999999999999984
No 99
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.005 Score=60.88 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=65.0
Q ss_pred ccccCCcchHHHHHHHhccccccc---------------------CCCceEEEEeCCCCCHHHHHHHHHHhhcCC---Cc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIE---------------------NFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EK 182 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~---------------------~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~k 182 (297)
++|..|+||||+|+.+.+.-.... |.+ .+.+..+....+.++ ++|.+.+... ++
T Consensus 43 f~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d-~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~ 120 (585)
T PRK14950 43 FTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD-VIEMDAASHTSVDDA-REIIERVQFRPALAR 120 (585)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe-EEEEeccccCCHHHH-HHHHHHHhhCcccCC
Confidence 689999999999998886321111 111 223333333444443 4555544332 67
Q ss_pred eEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhh
Q 043781 183 KFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 183 r~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
+-++|+|++.....+..+.|...+..- ...+.+|++|...+ ....+-.. ...+.+..++..++
T Consensus 121 ~kVvIIDEa~~L~~~a~naLLk~LEep----------p~~tv~Il~t~~~~kll~tI~SR---~~~i~f~~l~~~el 184 (585)
T PRK14950 121 YKVYIIDEVHMLSTAAFNALLKTLEEP----------PPHAIFILATTEVHKVPATILSR---CQRFDFHRHSVADM 184 (585)
T ss_pred eEEEEEeChHhCCHHHHHHHHHHHhcC----------CCCeEEEEEeCChhhhhHHHHhc---cceeeCCCCCHHHH
Confidence 789999999876545666676666542 34556666654322 11222111 13456666665554
No 100
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.11 E-value=0.0015 Score=57.76 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=17.3
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
-++|++|+||||+|+.+++
T Consensus 46 ll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 46 IFKGNPGTGKTTVARILGK 64 (261)
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999976
No 101
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.003 Score=57.87 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=71.1
Q ss_pred ccccCCcchHHHHHHHhcccccc--------------------cCCCceEEEEe---CCCCCHHHHHHHHHHhhcCC---
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI--------------------ENFDKRIWVCV---SDPFDEFRIAKAIIEGLEGS--- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~v---s~~~~~~~~~~~i~~~~~~~--- 180 (297)
+.|+.|+|||++|..+...---. .|-| ..|+.- ++...+.++- ++.+.+...
T Consensus 27 f~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~iR-~l~~~~~~~~~~ 104 (328)
T PRK05707 27 LHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQVR-ELVSFVVQTAQL 104 (328)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHHHH-HHHHHHhhcccc
Confidence 67999999999998777642111 1222 234422 2334554443 344444332
Q ss_pred CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-CccccCCccchhhhh
Q 043781 181 EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAKFPVSIFDAKKIW 259 (297)
Q Consensus 181 ~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~~~l~~l~~~~lf 259 (297)
+++=++|+|++...+.+..+.|...+..- ..++.+|+||.+.+ .+..+.-. ...+++.+++.++..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEP----------p~~~~fiL~t~~~~---~ll~TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEP----------SGDTVLLLISHQPS---RLLPTIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCC----------CCCeEEEEEECChh---hCcHHHHhhceeeeCCCcCHHHHH
Confidence 44445567999998777888888888652 45677777776543 23222111 255778888777655
Q ss_pred hhh
Q 043781 260 GWE 262 (297)
Q Consensus 260 ~~~ 262 (297)
.|-
T Consensus 172 ~~L 174 (328)
T PRK05707 172 QWL 174 (328)
T ss_pred HHH
Confidence 443
No 102
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.08 E-value=0.00094 Score=59.27 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=33.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCC-ceEEEEeCCCC-CHHHHHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPF-DEFRIAKAIIE 175 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~ 175 (297)
..|+|..|+|||||++.++++ ++.+|+ ..+++-+.... .+.++.+++..
T Consensus 72 ~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 72 IGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred EEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 368999999999999999994 554554 44455555543 34566666554
No 103
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.07 E-value=0.0013 Score=60.72 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=45.0
Q ss_pred cccccCCcchHHHHHHHhccccccc-CCCce-EEEEeCCC-CCHHHHHHHHHHhhcCC----------------------
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIE-NFDKR-IWVCVSDP-FDEFRIAKAIIEGLEGS---------------------- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~-~F~~~-~wv~vs~~-~~~~~~~~~i~~~~~~~---------------------- 180 (297)
.|+|.+|+|||||++.+.+. +.. +-+.. +|+.+.+. ..+.++++.+...+..+
T Consensus 137 LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 137 LIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 58899999999999998884 322 33443 56555443 35566666665544331
Q ss_pred ----CceEEEEEeCCC
Q 043781 181 ----EKKFFLILDDVW 192 (297)
Q Consensus 181 ----~kr~LiVlDdv~ 192 (297)
+++.+||+|++-
T Consensus 215 f~~~GkdVVLvlDslt 230 (380)
T PRK12608 215 LVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHcCCCEEEEEeCcH
Confidence 999999999996
No 104
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.0047 Score=57.43 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=50.8
Q ss_pred HHHHHHhhcCC---CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCC
Q 043781 170 AKAIIEGLEGS---EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLR 245 (297)
Q Consensus 170 ~~~i~~~~~~~---~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~ 245 (297)
.+++.+.+... +++-++|+|++...+....+.|...+..- .+++.+|++|...+. +..+ ..-.
T Consensus 126 iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep----------p~~~~~IL~t~~~~~---llpti~SRc 192 (365)
T PRK07471 126 VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP----------PARSLFLLVSHAPAR---LLPTIRSRC 192 (365)
T ss_pred HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC----------CCCeEEEEEECCchh---chHHhhccc
Confidence 44555555433 67779999999988777777787777652 456667777765432 2222 1123
Q ss_pred ccccCCccchhhhhhh
Q 043781 246 AKFPVSIFDAKKIWGW 261 (297)
Q Consensus 246 ~~~~l~~l~~~~lf~~ 261 (297)
..+++.+++..++..|
T Consensus 193 ~~i~l~~l~~~~i~~~ 208 (365)
T PRK07471 193 RKLRLRPLAPEDVIDA 208 (365)
T ss_pred eEEECCCCCHHHHHHH
Confidence 6778888887775444
No 105
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.05 E-value=0.0004 Score=57.52 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=16.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-|+|.+|+|||+|.+.++..
T Consensus 27 ~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 27 LLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp EEE-B-TTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999998884
No 106
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0018 Score=57.14 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=44.7
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC----------CceEEEEEeCCCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS----------EKKFFLILDDVWTDD 195 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~----------~kr~LiVlDdv~~~~ 195 (297)
-++|.+|+|||.||..+.+.-- +..+ .+.+++ ..+++.++....... .+-=||||||+-...
T Consensus 109 ~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 109 VLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEP 180 (254)
T ss_pred EEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCcc
Confidence 4789999999999999999532 3223 334453 345555554444321 456699999998875
Q ss_pred ccCHH
Q 043781 196 YSKWE 200 (297)
Q Consensus 196 ~~~w~ 200 (297)
.+.|.
T Consensus 181 ~~~~~ 185 (254)
T COG1484 181 FSQEE 185 (254)
T ss_pred CCHHH
Confidence 56665
No 107
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.004 Score=61.40 Aligned_cols=120 Identities=14% Similarity=0.117 Sum_probs=67.3
Q ss_pred ccccCCcchHHHHHHHhcccccc--------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---Cce
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI--------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKK 183 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr 183 (297)
++|..|+||||+|+.+.+.-.-. .+++. +.+.......+.++ ++|.+.+... +++
T Consensus 43 f~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~-~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~ 120 (576)
T PRK14965 43 FTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV-FEIDGASNTGVDDI-RELRENVKYLPSRSRY 120 (576)
T ss_pred EECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe-eeeeccCccCHHHH-HHHHHHHHhccccCCc
Confidence 67999999999998887631111 12222 22232333344443 4455544322 566
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhhhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~lf~~ 261 (297)
-++|+|++........+.|...+..- .....+|++|...+ +...+-.. ...+.+..++..++..|
T Consensus 121 KVvIIdev~~Lt~~a~naLLk~LEep----------p~~~~fIl~t~~~~kl~~tI~SR---c~~~~f~~l~~~~i~~~ 186 (576)
T PRK14965 121 KIFIIDEVHMLSTNAFNALLKTLEEP----------PPHVKFIFATTEPHKVPITILSR---CQRFDFRRIPLQKIVDR 186 (576)
T ss_pred eEEEEEChhhCCHHHHHHHHHHHHcC----------CCCeEEEEEeCChhhhhHHHHHh---hhhhhcCCCCHHHHHHH
Confidence 68899999877655677777777642 34556665554322 22222211 24567777776665443
No 108
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.01 E-value=0.002 Score=57.13 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=46.7
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHH--------HHhh----------------cCC--
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI--------IEGL----------------EGS-- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--------~~~~----------------~~~-- 180 (297)
+.|.+|+|||+||+.+.+ ..... .+.++.+...+..+++... ..++ .++
T Consensus 26 L~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 26 LRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred EEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 679999999999999987 33222 2344444444444443221 0000 000
Q ss_pred ---CceEEEEEeCCCCCCccCHHHHHHHHhh
Q 043781 181 ---EKKFFLILDDVWTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 181 ---~kr~LiVlDdv~~~~~~~w~~l~~~l~~ 208 (297)
.+...++||++...+.+.+..|...+..
T Consensus 101 ~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~ 131 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSKPETNNVLLSVFEE 131 (262)
T ss_pred HHHHcCCEEEEcchhhCCHHHHHHHHHHhcC
Confidence 3446899999998776667677776643
No 109
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.99 E-value=0.0025 Score=55.38 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=48.8
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCC--CCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCC-ccCHHHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD--PFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDD-YSKWEPFH 203 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~-~~~w~~l~ 203 (297)
+||..|.|||+|++.+.+...-+. .+ -|.|++ -.++.+++..| .....||+|.+||+.-.. ......|+
T Consensus 57 L~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~~L~~l~~l~~~l----~~~~~kFIlf~DDLsFe~~d~~yk~LK 128 (249)
T PF05673_consen 57 LWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKEDLGDLPELLDLL----RDRPYKFILFCDDLSFEEGDTEYKALK 128 (249)
T ss_pred EecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHHHhccHHHHHHHH----hcCCCCEEEEecCCCCCCCcHHHHHHH
Confidence 799999999999999988322221 22 233333 23445544444 333689999999997542 24577788
Q ss_pred HHHhhh
Q 043781 204 NCLMRV 209 (297)
Q Consensus 204 ~~l~~~ 209 (297)
..|..+
T Consensus 129 s~LeGg 134 (249)
T PF05673_consen 129 SVLEGG 134 (249)
T ss_pred HHhcCc
Confidence 888654
No 110
>PRK07261 topology modulation protein; Provisional
Probab=96.98 E-value=0.0015 Score=54.11 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=40.4
Q ss_pred ccccccCCcchHHHHHHHhcccccc-cCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
+.|+|++|+||||||+.+.....+. -+.|...|-+.....+..+....+...+.. .+ .|+|+...
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--wIidg~~~ 68 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLK--HD--WIIDGNYS 68 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhC--CC--EEEcCcch
Confidence 4689999999999999988743221 245666675443344445555544444432 33 67888744
No 111
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.0037 Score=57.29 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=69.3
Q ss_pred ccccCCcchHHHHHHHhcccccc--------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcC---CCce
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI--------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEG---SEKK 183 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~---~~kr 183 (297)
++|+.|+||||+|+.+.+.---. .|.|.......+....+.++. ++.+.+.. .+++
T Consensus 33 f~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir-~l~~~~~~~~~~~~~ 111 (329)
T PRK08058 33 FEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIR-YLKEEFSKSGVESNK 111 (329)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHhhCCcccCc
Confidence 78999999999998876531111 133433332233334444443 33444331 2566
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-CccccCCccchhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAKFPVSIFDAKKI 258 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~~~l~~l~~~~l 258 (297)
=++|+|++.....+..+.|...+..- ..++.+|++|...+ .+..+... ...+++.+++..++
T Consensus 112 kvviI~~a~~~~~~a~NaLLK~LEEP----------p~~~~~Il~t~~~~---~ll~TIrSRc~~i~~~~~~~~~~ 174 (329)
T PRK08058 112 KVYIIEHADKMTASAANSLLKFLEEP----------SGGTTAILLTENKH---QILPTILSRCQVVEFRPLPPESL 174 (329)
T ss_pred eEEEeehHhhhCHHHHHHHHHHhcCC----------CCCceEEEEeCChH---hCcHHHHhhceeeeCCCCCHHHH
Confidence 67999999887656677777777542 56677777776432 33322222 25677888877664
No 112
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.97 E-value=0.0021 Score=48.81 Aligned_cols=19 Identities=47% Similarity=0.604 Sum_probs=17.2
Q ss_pred ccccCCcchHHHHHHHhcc
Q 043781 127 VRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~ 145 (297)
|+|.+|+|||+||+.+..+
T Consensus 3 i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 3 IYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 7899999999999998874
No 113
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.0064 Score=60.91 Aligned_cols=120 Identities=20% Similarity=0.205 Sum_probs=67.2
Q ss_pred ccccCCcchHHHHHHHhcccccc-----------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---CceEEE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI-----------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKKFFL 186 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~-----------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr~Li 186 (297)
++|+.|+||||+|+.+.+.---. .+++ .+++..+....+.+ .+++.+.+... +++-++
T Consensus 45 F~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaasn~~vd~-IReLie~~~~~P~~g~~KV~ 122 (725)
T PRK07133 45 FSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIY 122 (725)
T ss_pred EECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEE
Confidence 67999999999998887631110 1111 12333322233433 34444444322 677799
Q ss_pred EEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCCccccCCccchhhhhhh
Q 043781 187 ILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 187 VlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~~~~~l~~l~~~~lf~~ 261 (297)
|+|++.....+.++.|...+..- .....+|++|...+ .+..+ ..-...+.+.+++..++..|
T Consensus 123 IIDEa~~LT~~A~NALLKtLEEP----------P~~tifILaTte~~---KLl~TI~SRcq~ieF~~L~~eeI~~~ 185 (725)
T PRK07133 123 IIDEVHMLSKSAFNALLKTLEEP----------PKHVIFILATTEVH---KIPLTILSRVQRFNFRRISEDEIVSR 185 (725)
T ss_pred EEEChhhCCHHHHHHHHHHhhcC----------CCceEEEEEcCChh---hhhHHHHhhceeEEccCCCHHHHHHH
Confidence 99999877656777777777541 33445555543322 22222 11124678888877766433
No 114
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.0066 Score=58.08 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=65.2
Q ss_pred ccccCCcchHHHHHHHhccccc---------------------ccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---Cc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV---------------------IENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EK 182 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~---------------------~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~k 182 (297)
++|.+|+||||+|+.+.+.-.- ..+++. +++.......+.++ +++.+.+... ++
T Consensus 44 f~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~-~~i~g~~~~gid~i-r~i~~~l~~~~~~~~ 121 (451)
T PRK06305 44 FSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV-LEIDGASHRGIEDI-RQINETVLFTPSKSR 121 (451)
T ss_pred EEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce-EEeeccccCCHHHH-HHHHHHHHhhhhcCC
Confidence 6899999999999888763111 112332 22332223333333 2333333321 56
Q ss_pred eEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCCccccCCccchhhhhhh
Q 043781 183 KFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 183 r~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~~~~~l~~l~~~~lf~~ 261 (297)
+-++|+|++........+.|...+..- .....+|++|... ..+... ..-..++.+..++..++..|
T Consensus 122 ~kvvIIdead~lt~~~~n~LLk~lEep----------~~~~~~Il~t~~~---~kl~~tI~sRc~~v~f~~l~~~el~~~ 188 (451)
T PRK06305 122 YKIYIIDEVHMLTKEAFNSLLKTLEEP----------PQHVKFFLATTEI---HKIPGTILSRCQKMHLKRIPEETIIDK 188 (451)
T ss_pred CEEEEEecHHhhCHHHHHHHHHHhhcC----------CCCceEEEEeCCh---HhcchHHHHhceEEeCCCCCHHHHHHH
Confidence 778999999766444555666666541 3455666666422 222222 11124678888877776443
No 115
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.87 E-value=0.012 Score=60.62 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=46.3
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC---HHHHH------------HHHHHhhcCCCceEEEEEe
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD---EFRIA------------KAIIEGLEGSEKKFFLILD 189 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~---~~~~~------------~~i~~~~~~~~kr~LiVlD 189 (297)
.-++|+.|+|||+||+.+.+. ....-...+.+.++.-.. ..+++ ..+.+.+.. ...-+|+||
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~-~p~~vLllD 677 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR-RPYSVILLD 677 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHh-CCCCeEEEe
Confidence 347899999999999999873 221112233443332111 11111 001111110 223599999
Q ss_pred CCCCCCccCHHHHHHHHhhh
Q 043781 190 DVWTDDYSKWEPFHNCLMRV 209 (297)
Q Consensus 190 dv~~~~~~~w~~l~~~l~~~ 209 (297)
++...+.+.++.|...+..+
T Consensus 678 Eieka~~~v~~~Ll~ile~g 697 (857)
T PRK10865 678 EVEKAHPDVFNILLQVLDDG 697 (857)
T ss_pred ehhhCCHHHHHHHHHHHhhC
Confidence 99887777787787777553
No 116
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.84 E-value=0.0064 Score=49.84 Aligned_cols=95 Identities=21% Similarity=0.092 Sum_probs=64.5
Q ss_pred ccccCCcchHHHHHHHhccccc---c---------------cCCCceEEEEeCC---CCCHHHHHHHHHHhhcCC---Cc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV---I---------------ENFDKRIWVCVSD---PFDEFRIAKAIIEGLEGS---EK 182 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~---~---------------~~F~~~~wv~vs~---~~~~~~~~~~i~~~~~~~---~k 182 (297)
++|..|+||+++|..+.+.--- . ....-..|+.... ...+.++. ++.+.+... ++
T Consensus 24 ~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~ 102 (162)
T PF13177_consen 24 FHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLSPSEGK 102 (162)
T ss_dssp EECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS-TTSS
T ss_pred EECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHHHhcCC
Confidence 6799999999999877663111 1 1223344555443 35666655 777766554 67
Q ss_pred eEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccH
Q 043781 183 KFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ 232 (297)
Q Consensus 183 r~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~ 232 (297)
+=++|+|++.....+.+..|...+..- ..++.+|++|++.
T Consensus 103 ~KviiI~~ad~l~~~a~NaLLK~LEep----------p~~~~fiL~t~~~ 142 (162)
T PF13177_consen 103 YKVIIIDEADKLTEEAQNALLKTLEEP----------PENTYFILITNNP 142 (162)
T ss_dssp SEEEEEETGGGS-HHHHHHHHHHHHST----------TTTEEEEEEES-G
T ss_pred ceEEEeehHhhhhHHHHHHHHHHhcCC----------CCCEEEEEEECCh
Confidence 888999999998777888888888763 6678888888754
No 117
>CHL00181 cbbX CbbX; Provisional
Probab=96.83 E-value=0.0043 Score=55.76 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=17.2
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
-++|.+|+||||+|+.+++
T Consensus 63 ll~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 63 SFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3689999999999999977
No 118
>PRK10536 hypothetical protein; Provisional
Probab=96.82 E-value=0.0053 Score=53.93 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=27.2
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEec
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
-+||+|.+.+.+ -.+++..+.+. +.+|++|+|=-
T Consensus 178 ~~vIvDEaqn~~---~~~~k~~ltR~----------g~~sk~v~~GD 211 (262)
T PRK10536 178 AVVILDEAQNVT---AAQMKMFLTRL----------GENVTVIVNGD 211 (262)
T ss_pred CEEEEechhcCC---HHHHHHHHhhc----------CCCCEEEEeCC
Confidence 489999999884 46677777775 89999999865
No 119
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.82 E-value=0.0068 Score=48.58 Aligned_cols=34 Identities=32% Similarity=0.263 Sum_probs=22.9
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 161 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 161 (297)
.|+|.+|+||||++..+... ....-..++|+...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECC
Confidence 47899999999999988774 22222344455443
No 120
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.81 E-value=0.0013 Score=62.35 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=38.5
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC---C--CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP---F--DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~--~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
-++|++|+|||+||+.+++ .....| +.+..+.- + .....++.++..... +.+.+|+||++..
T Consensus 221 LL~GPPGTGKT~LAraIA~--el~~~f---i~V~~seL~~k~~Ge~~~~vr~lF~~A~~-~~P~ILfIDEID~ 287 (438)
T PTZ00361 221 ILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSELIQKYLGDGPKLVRELFRVAEE-NAPSIVFIDEIDA 287 (438)
T ss_pred EEECCCCCCHHHHHHHHHH--hhCCCE---EEEecchhhhhhcchHHHHHHHHHHHHHh-CCCcEEeHHHHHH
Confidence 4789999999999999999 444444 22221111 1 123344555544333 5778999999853
No 121
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.80 E-value=0.0028 Score=59.21 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=67.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC--------CceEEEEEeCCCCCCc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS--------EKKFFLILDDVWTDDY 196 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~--------~kr~LiVlDdv~~~~~ 196 (297)
.-|||..|+|||.|++.+.+ ....+......++++ .......++..+... -.-=++++||++.-..
T Consensus 116 lfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g 189 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG 189 (408)
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence 45899999999999999999 455555433333332 233333333333221 1122899999987411
Q ss_pred -cCHHH-HHHHHhhhhhhhceeeecCCCCeEEEEeccHH-----HHHHHHHhhCCCccccCCccchhh
Q 043781 197 -SKWEP-FHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-----KLRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 197 -~~w~~-l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-----~~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
+.|+. +-..|... ..+|..||+|++..- ...++..++...-++.+.+++.+.
T Consensus 190 k~~~qeefFh~FN~l---------~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 190 KERTQEEFFHTFNAL---------LENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred ChhHHHHHHHHHHHH---------HhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 23332 33333332 145558999985321 123555666655677777777554
No 122
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.0037 Score=55.28 Aligned_cols=111 Identities=20% Similarity=0.169 Sum_probs=59.8
Q ss_pred ccccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHH
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPF 202 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l 202 (297)
|-+=++|++|+||||||..+.+ ++.-.+ -++-.....-..-+-.|+..+ ...=++.+|.++......-+-|
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~--Emgvn~----k~tsGp~leK~gDlaaiLt~L---e~~DVLFIDEIHrl~~~vEE~L 123 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIAN--ELGVNL----KITSGPALEKPGDLAAILTNL---EEGDVLFIDEIHRLSPAVEEVL 123 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHH--HhcCCe----EecccccccChhhHHHHHhcC---CcCCeEEEehhhhcChhHHHHh
Confidence 3445899999999999999999 443332 111111112222233445555 4566788999988764333334
Q ss_pred HHHHhhhhhhhceeeecCCCCeEE-----------EEeccHHHHHHHHHhhCC
Q 043781 203 HNCLMRVLQEFAAIEVDGDENPLS-----------LTSTCQEKLRHLTLTLGL 244 (297)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~gs~ii-----------iTTr~~~~~~~v~~~~~~ 244 (297)
=+.+.+. ..+++.-.++++|.| -|||--.....+-..+|+
T Consensus 124 YpaMEDf--~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi 174 (332)
T COG2255 124 YPAMEDF--RLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGI 174 (332)
T ss_pred hhhhhhe--eEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCC
Confidence 4444332 122333345555543 388833333334445564
No 123
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.79 E-value=0.0013 Score=54.51 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=58.8
Q ss_pred cccccCCcchHHHHHHHhcccccc-cCCCceEEEEeCCCCCH---HHHHHHHHHhhcCC---CceEEEEEeCCCCCCc--
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVSDPFDE---FRIAKAIIEGLEGS---EKKFFLILDDVWTDDY-- 196 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~---~~~~~~i~~~~~~~---~kr~LiVlDdv~~~~~-- 196 (297)
-++|+.|+|||.||+.+.+ .+. ......+-+..+.-... ...+.......... ...-+|+||++...+.
T Consensus 7 ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~~ 84 (171)
T PF07724_consen 7 LLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPSN 84 (171)
T ss_dssp EEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHTT
T ss_pred EEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccccc
Confidence 3679999999999999988 343 34445555555443331 11111111111111 2223999999999887
Q ss_pred ---------cCHHHHHHHHhhhhhh-hceeeecCCCCeEEEEec
Q 043781 197 ---------SKWEPFHNCLMRVLQE-FAAIEVDGDENPLSLTST 230 (297)
Q Consensus 197 ---------~~w~~l~~~l~~~~~~-~~~~~~~~~gs~iiiTTr 230 (297)
..|+.|...|..+... ..-..++-.++-+|.||.
T Consensus 85 ~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn 128 (171)
T PF07724_consen 85 SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSN 128 (171)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEES
T ss_pred cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecc
Confidence 7788888888665211 111223334455666665
No 124
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.014 Score=53.43 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=67.5
Q ss_pred ccccCCcchHHHHHHHhccccc---------------------ccCCCceEEEEe-C---------CCCCHHHHHHHHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV---------------------IENFDKRIWVCV-S---------DPFDEFRIAKAIIE 175 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~---------------------~~~F~~~~wv~v-s---------~~~~~~~~~~~i~~ 175 (297)
++|+.|+||||+|..+..--.- ..|-|. .++.. + ....+.++ +++.+
T Consensus 26 f~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~-~~~~p~~~~~~~g~~~~~I~id~i-R~l~~ 103 (325)
T PRK08699 26 FAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDF-YEITPLSDEPENGRKLLQIKIDAV-REIID 103 (325)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEEecccccccccccCCCcCHHHH-HHHHH
Confidence 7899999999999887763110 112232 22321 1 11344443 33545
Q ss_pred hhcCC---CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhC-CCccccCC
Q 043781 176 GLEGS---EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLG-LRAKFPVS 251 (297)
Q Consensus 176 ~~~~~---~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~-~~~~~~l~ 251 (297)
.+... +++=++|+|++...+...-+.+...+... ..+..+|++|++.+. +..... -...+++.
T Consensus 104 ~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep----------~~~~~~Ilvth~~~~---ll~ti~SRc~~~~~~ 170 (325)
T PRK08699 104 NVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP----------PPQVVFLLVSHAADK---VLPTIKSRCRKMVLP 170 (325)
T ss_pred HHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC----------cCCCEEEEEeCChHh---ChHHHHHHhhhhcCC
Confidence 44432 44455567999887655666676666542 345667778876432 221111 12567788
Q ss_pred ccchhhhhhhh
Q 043781 252 IFDAKKIWGWE 262 (297)
Q Consensus 252 ~l~~~~lf~~~ 262 (297)
+++.++...|-
T Consensus 171 ~~~~~~~~~~L 181 (325)
T PRK08699 171 APSHEEALAYL 181 (325)
T ss_pred CCCHHHHHHHH
Confidence 88777655553
No 125
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.0085 Score=55.40 Aligned_cols=78 Identities=12% Similarity=0.012 Sum_probs=47.0
Q ss_pred HHHHHhhcCC---CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhC-CCc
Q 043781 171 KAIIEGLEGS---EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLG-LRA 246 (297)
Q Consensus 171 ~~i~~~~~~~---~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~-~~~ 246 (297)
+.+.+.+... +++-++|+|++...+.+..+.|...+..- .....+|++|...+ .+..+.. -..
T Consensus 127 R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp----------p~~~~fiLit~~~~---~llptIrSRc~ 193 (351)
T PRK09112 127 RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP----------PARALFILISHSSG---RLLPTIRSRCQ 193 (351)
T ss_pred HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC----------CCCceEEEEECChh---hccHHHHhhcc
Confidence 3455444432 67779999999998777777787777542 33455555554332 2222111 125
Q ss_pred cccCCccchhhhhhh
Q 043781 247 KFPVSIFDAKKIWGW 261 (297)
Q Consensus 247 ~~~l~~l~~~~lf~~ 261 (297)
.+++.+++..++..|
T Consensus 194 ~i~l~pl~~~~~~~~ 208 (351)
T PRK09112 194 PISLKPLDDDELKKA 208 (351)
T ss_pred EEEecCCCHHHHHHH
Confidence 778888887776444
No 126
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0073 Score=53.12 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=71.1
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC-----CCCHHHHHHHHHHhhcCC-------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-----PFDEFRIAKAIIEGLEGS------------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~~~~~------------------- 180 (297)
.++||-.|+|||||++.+.. ....-...++....+ .....+-..++++.++..
T Consensus 42 ~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi 118 (268)
T COG4608 42 LGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI 118 (268)
T ss_pred EEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhH
Confidence 57999999999999999998 434444455443221 112334455666666654
Q ss_pred -------CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCCC
Q 043781 181 -------EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGLR 245 (297)
Q Consensus 181 -------~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~~ 245 (297)
-+.-|||.|..-+. +.+.-.++...|.+.- ...|-..+..|++-+++++++....+.
T Consensus 119 ~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq--------~~~~lt~lFIsHDL~vv~~isdri~VM 183 (268)
T COG4608 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ--------EELGLTYLFISHDLSVVRYISDRIAVM 183 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH--------HHhCCeEEEEEEEHHhhhhhcccEEEE
Confidence 67889999987664 2222334444554321 145677888899888899988765443
No 127
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0019 Score=57.29 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=82.6
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC--CCHHHHHHHHHHhhcCCCceEEEEEeCCCCC-------Ccc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP--FDEFRIAKAIIEGLEGSEKKFFLILDDVWTD-------DYS 197 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~-------~~~ 197 (297)
+||.+|.|||-||+.|.| .....|-.++--..-+. -+-.++.++++.-... .-..++.+|.+... +..
T Consensus 224 lyG~PGTGKTLLAKAVAN--qTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e-~apSIvFiDEIdAiGtKRyds~Sg 300 (440)
T KOG0726|consen 224 LYGEPGTGKTLLAKAVAN--QTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAIGTKRYDSNSG 300 (440)
T ss_pred EeCCCCCchhHHHHHHhc--ccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHh-cCCceEEeehhhhhccccccCCCc
Confidence 689999999999999999 45555532221000000 1233455555544433 56677888887532 101
Q ss_pred CHHHHHH-HH--hhhhhhhceeeecCCCCeEEEEec-cHHHHHHHHHhhCCCccccCCccchhhhhhhhhccCCCCCC--
Q 043781 198 KWEPFHN-CL--MRVLQEFAAIEVDGDENPLSLTST-CQEKLRHLTLTLGLRAKFPVSIFDAKKIWGWEVFGRNTSTR-- 271 (297)
Q Consensus 198 ~w~~l~~-~l--~~~~~~~~~~~~~~~gs~iiiTTr-~~~~~~~v~~~~~~~~~~~l~~l~~~~lf~~~~f~~~~~~~-- 271 (297)
--..+.. .| -+.+.+|. +...-+||.+|. .+...-.+.....+.+-+.+..-|..- .+++|.-+.+.-
T Consensus 301 gerEiQrtmLELLNQldGFd----srgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~T--kkkIf~IHTs~Mtl 374 (440)
T KOG0726|consen 301 GEREIQRTMLELLNQLDGFD----SRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT--KKKIFQIHTSRMTL 374 (440)
T ss_pred cHHHHHHHHHHHHHhccCcc----ccCCeEEEEecccccccCHhhcCCCccccccccCCCchhh--hceeEEEeecccch
Confidence 1111221 11 11122221 123346776664 222233333444444445555445444 567776443321
Q ss_pred --chhhHhhhhhhccccccccchhhc
Q 043781 272 --PGMVSRYLMAEFCEPVCSVKAWCA 295 (297)
Q Consensus 272 --~~~~~~~~~~~~c~~~c~~~~~~~ 295 (297)
.-.+..++..+.-+|+.-|+|.|.
T Consensus 375 ~~dVnle~li~~kddlSGAdIkAict 400 (440)
T KOG0726|consen 375 AEDVNLEELIMTKDDLSGADIKAICT 400 (440)
T ss_pred hccccHHHHhhcccccccccHHHHHH
Confidence 224455555667899999999994
No 128
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.74 E-value=0.0026 Score=61.64 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=36.4
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-------CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-------DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
=++|++|+|||+||+.+.+. ..-+| +.++... .....++.++..... ..+.+|+||++..
T Consensus 92 LL~GppGtGKT~la~alA~~--~~~~~-----~~i~~~~~~~~~~g~~~~~l~~~f~~a~~-~~p~Il~iDEid~ 158 (495)
T TIGR01241 92 LLVGPPGTGKTLLAKAVAGE--AGVPF-----FSISGSDFVEMFVGVGASRVRDLFEQAKK-NAPCIIFIDEIDA 158 (495)
T ss_pred EEECCCCCCHHHHHHHHHHH--cCCCe-----eeccHHHHHHHHhcccHHHHHHHHHHHHh-cCCCEEEEechhh
Confidence 47899999999999999984 32222 2222110 011233444444332 4568999999965
No 129
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.0051 Score=55.72 Aligned_cols=96 Identities=18% Similarity=0.048 Sum_probs=63.8
Q ss_pred cccccCCcchHHHHHHHhccccccc-------------------CCCceEEEEeCCCCC---HHHHHHHHHHhhcCC---
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIE-------------------NFDKRIWVCVSDPFD---EFRIAKAIIEGLEGS--- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~---~~~~~~~i~~~~~~~--- 180 (297)
=++|++|+||||+|..+.+.-.-.. ...-...+..+.... ..+..+++.+.....
T Consensus 28 L~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~ 107 (325)
T COG0470 28 LFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLE 107 (325)
T ss_pred eeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCCC
Confidence 3779999999999998887422111 123445555555554 466677777766554
Q ss_pred CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 181 EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 181 ~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
++.-+++||++.....+.-..+...+.. ....+++|++|..
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEe----------p~~~~~~il~~n~ 148 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEE----------PPKNTRFILITND 148 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhcc----------CCCCeEEEEEcCC
Confidence 7889999999988754445555555543 2667788888763
No 130
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.017 Score=57.09 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=41.3
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHH-----------HHHHHHhhcCC-CceEEEEEeCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRI-----------AKAIIEGLEGS-EKKFFLILDDVW 192 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~-----------~~~i~~~~~~~-~kr~LiVlDdv~ 192 (297)
.-+||++|+|||.|++.|++ .+.+.| +-+++..--|..+| -..|+..+... .+.=|++||.+.
T Consensus 353 LcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEID 427 (782)
T COG0466 353 LCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEID 427 (782)
T ss_pred EEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechh
Confidence 45899999999999999999 566666 22333333333322 12233333222 467789999998
Q ss_pred CCC
Q 043781 193 TDD 195 (297)
Q Consensus 193 ~~~ 195 (297)
...
T Consensus 428 Km~ 430 (782)
T COG0466 428 KMG 430 (782)
T ss_pred hcc
Confidence 653
No 131
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.66 E-value=0.0031 Score=57.88 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=54.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhc-CC-----------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE-GS----------------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~-~~----------------------- 180 (297)
.-|+|-.|.|||.+.+.+++.. .. ..+|+++-.-++...++..|+.+++ .+
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 3589999999999999999953 22 3589999999999999999999985 21
Q ss_pred ------CceEEEEEeCCCCC
Q 043781 181 ------EKKFFLILDDVWTD 194 (297)
Q Consensus 181 ------~kr~LiVlDdv~~~ 194 (297)
++.++||||++..-
T Consensus 108 ~~~t~~d~~~~liLDnad~l 127 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADAL 127 (438)
T ss_pred HHhhccCceEEEEEcCHHhh
Confidence 57999999999764
No 132
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.015 Score=57.22 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=65.9
Q ss_pred ccccCCcchHHHHHHHhcccccc--------------------cCCCceEEEEeCCCCCHHHHHHHHHHhhcC---CCce
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI--------------------ENFDKRIWVCVSDPFDEFRIAKAIIEGLEG---SEKK 183 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~---~~kr 183 (297)
++|+.|+||||+|+.+.+.---. .+++. +++.......+.++. ++.+.+.. .+++
T Consensus 43 f~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~~idgas~~~vddIr-~l~e~~~~~p~~~~~ 120 (563)
T PRK06647 43 FSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-IEIDGASNTSVQDVR-QIKEEIMFPPASSRY 120 (563)
T ss_pred EECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-EEecCcccCCHHHHH-HHHHHHHhchhcCCC
Confidence 78999999999999988742111 12332 333333334454443 34333221 1566
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhC-CCccccCCccchhhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLG-LRAKFPVSIFDAKKIW 259 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~-~~~~~~l~~l~~~~lf 259 (297)
=++|+|++.......++.|...+..- .+...+|++|... ..+....- -...+.+..++..++.
T Consensus 121 KVvIIDEa~~Ls~~a~naLLK~LEep----------p~~~vfI~~tte~---~kL~~tI~SRc~~~~f~~l~~~el~ 184 (563)
T PRK06647 121 RVYIIDEVHMLSNSAFNALLKTIEEP----------PPYIVFIFATTEV---HKLPATIKSRCQHFNFRLLSLEKIY 184 (563)
T ss_pred EEEEEEChhhcCHHHHHHHHHhhccC----------CCCEEEEEecCCh---HHhHHHHHHhceEEEecCCCHHHHH
Confidence 68999999877655677776666541 3455565555432 22322211 1145677777666653
No 133
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.011 Score=59.40 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=47.8
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHH-HHHhhcCC------------------CceE-EE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA-IIEGLEGS------------------EKKF-FL 186 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~-i~~~~~~~------------------~kr~-Li 186 (297)
..|+.|||||.||+.+... +-+.-+..+-+ |+.+.+.. -.+.+-++ .+.| +|
T Consensus 526 F~GPTGVGKTELAkaLA~~--Lfg~e~aliR~------DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySVi 597 (786)
T COG0542 526 FLGPTGVGKTELAKALAEA--LFGDEQALIRI------DMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVI 597 (786)
T ss_pred eeCCCcccHHHHHHHHHHH--hcCCCccceee------chHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEE
Confidence 5799999999999988872 21111233333 44443322 22333222 5656 88
Q ss_pred EEeCCCCCCccCHHHHHHHHhhh
Q 043781 187 ILDDVWTDDYSKWEPFHNCLMRV 209 (297)
Q Consensus 187 VlDdv~~~~~~~w~~l~~~l~~~ 209 (297)
.||.|-..+++.++-+...|.++
T Consensus 598 LlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 598 LLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred EechhhhcCHHHHHHHHHHhcCC
Confidence 89999988888888888888765
No 134
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.60 E-value=0.0083 Score=53.02 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=48.7
Q ss_pred cccccccCCcchHHHHHHHhcccccccC----CCceEEEEeCCCCCHHHHHHHHHHhhcCC-------------------
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIEN----FDKRIWVCVSDPFDEFRIAKAIIEGLEGS------------------- 180 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~~~~~------------------- 180 (297)
..+|+|.+|+|||.|+.+++-+..+... =...+|++....|+..++. +|++..+..
T Consensus 40 itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~l 118 (256)
T PF08423_consen 40 ITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEEL 118 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHHH
T ss_pred EEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHHH
Confidence 4579999999999999877654333221 2358899999999887764 566654432
Q ss_pred -------------CceEEEEEeCCCC
Q 043781 181 -------------EKKFFLILDDVWT 193 (297)
Q Consensus 181 -------------~kr~LiVlDdv~~ 193 (297)
.+-=|||+|.+-.
T Consensus 119 ~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 119 LELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHhhccccceEEEEecchHH
Confidence 6677999999854
No 135
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.60 E-value=0.0086 Score=56.35 Aligned_cols=114 Identities=20% Similarity=0.341 Sum_probs=65.6
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC----CCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP----FDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKW 199 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~----~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w 199 (297)
..-|+|+-++|||||++.+... ..+. .+++...+. ....+.+......... ++.+|+||.|... ..|
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~--~~~yifLDEIq~v--~~W 109 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRAYIELKER--EKSYIFLDEIQNV--PDW 109 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHHHHHhhcc--CCceEEEecccCc--hhH
Confidence 4568899999999999777663 2222 455543322 2233333333333222 7799999999998 578
Q ss_pred HHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHH-HHHHHh-hCCCccccCCccchhh
Q 043781 200 EPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKL-RHLTLT-LGLRAKFPVSIFDAKK 257 (297)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~-~~v~~~-~~~~~~~~l~~l~~~~ 257 (297)
+..-..+.+. ++. +|++|+-+.... ...+.. .|-...+.+-+++=.|
T Consensus 110 ~~~lk~l~d~----------~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~E 158 (398)
T COG1373 110 ERALKYLYDR----------GNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFRE 158 (398)
T ss_pred HHHHHHHHcc----------ccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHH
Confidence 8766666553 344 777876543221 222222 2223455566665444
No 136
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.53 E-value=0.0021 Score=57.34 Aligned_cols=73 Identities=27% Similarity=0.302 Sum_probs=40.7
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCCCc
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTDDY 196 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~~~ 196 (297)
=++|..|+|||++++.....-. ...| ...-++.|.......+++-|-..+... +|+.++.+||+--...
T Consensus 37 Ll~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~ 114 (272)
T PF12775_consen 37 LLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQP 114 (272)
T ss_dssp EEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S--
T ss_pred EEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCC
Confidence 3789999999999998876311 1111 123344554444444433222222111 8999999999987654
Q ss_pred cCHH
Q 043781 197 SKWE 200 (297)
Q Consensus 197 ~~w~ 200 (297)
+.|.
T Consensus 115 d~yg 118 (272)
T PF12775_consen 115 DKYG 118 (272)
T ss_dssp -TTS
T ss_pred CCCC
Confidence 5543
No 137
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.52 E-value=0.015 Score=48.36 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=59.2
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEE---eCCCCCHHHHHH------HHHHhhcCC--------------
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC---VSDPFDEFRIAK------AIIEGLEGS-------------- 180 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~------~i~~~~~~~-------------- 180 (297)
...|+|..|.|||||.+.+... .......+++. +.. .+...... ++++.++..
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 3468899999999999999983 23344445442 221 12211111 133333221
Q ss_pred -----------CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHH
Q 043781 181 -----------EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLT 239 (297)
Q Consensus 181 -----------~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~ 239 (297)
...-+++||+--.. +....+.+...+.... ...|..||++|+..+....++
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--------~~~~~tiii~sh~~~~~~~~~ 165 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA--------RERGKTVVMVLHDLNLAARYA 165 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--------HhcCCEEEEEeCCHHHHHHhC
Confidence 77889999988754 2233444555554431 022678899998655444443
No 138
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.16 Score=49.22 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=18.6
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
....++|.+|+||||++.++..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4557889999999999988776
No 139
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.086 Score=49.08 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...++|+.|+||||++.++...
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999988874
No 140
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.48 E-value=0.0078 Score=53.95 Aligned_cols=93 Identities=19% Similarity=0.156 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhhhhcccccccCCcccccccccccccccccccccCCcchHHHHHHHhccccccc----CCCceEEE
Q 043781 83 KIIEINENLDDIAKQKEVFNFNVIRGSTEKSERIHSTALINVSDVRGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWV 158 (297)
Q Consensus 83 ~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv 158 (297)
+.+++.++|+++...- .... +.-.-|||..|.|||++++.+.+.--... .--.++.|
T Consensus 41 ~A~~~L~~L~~Ll~~P---------------~~~R----mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v 101 (302)
T PF05621_consen 41 RAKEALDRLEELLEYP---------------KRHR----MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV 101 (302)
T ss_pred HHHHHHHHHHHHHhCC---------------cccC----CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE
Confidence 6677778888775211 1111 11234899999999999999886421111 01146677
Q ss_pred EeCCCCCHHHHHHHHHHhhcCC--------------------CceEEEEEeCCCCC
Q 043781 159 CVSDPFDEFRIAKAIIEGLEGS--------------------EKKFFLILDDVWTD 194 (297)
Q Consensus 159 ~vs~~~~~~~~~~~i~~~~~~~--------------------~kr~LiVlDdv~~~ 194 (297)
.+...++...+...|+.+++.+ -+-=+||+|.+.+.
T Consensus 102 q~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 102 QMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred ecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 8889999999999999999887 44557889999873
No 141
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.46 E-value=0.0085 Score=61.87 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=55.4
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC---HHHHH------------HHHHHhhcCCCceEEEEEeC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD---EFRIA------------KAIIEGLEGSEKKFFLILDD 190 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~---~~~~~------------~~i~~~~~~~~kr~LiVlDd 190 (297)
-++|++|+|||+||+.+... ....-...+.+..+.... ...+. ..+...+.. ....+|+||+
T Consensus 599 Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~-~p~~vlllDe 675 (852)
T TIGR03346 599 LFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR-KPYSVVLFDE 675 (852)
T ss_pred EEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHc-CCCcEEEEec
Confidence 47899999999999999873 221112223333332211 11110 011111111 2335999999
Q ss_pred CCCCCccCHHHHHHHHhhhh-hhhceeeecCCCCeEEEEecc
Q 043781 191 VWTDDYSKWEPFHNCLMRVL-QEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 191 v~~~~~~~w~~l~~~l~~~~-~~~~~~~~~~~gs~iiiTTr~ 231 (297)
+...+.+.++.|...|..+. .......++-.++-||+||..
T Consensus 676 ieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 676 VEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred cccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 99888788888888886541 101111112234557777763
No 142
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.41 E-value=0.0067 Score=54.46 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=16.3
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
-++|.+|+||||+|+.+.+
T Consensus 62 ll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 62 SFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 4789999999999977665
No 143
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.37 E-value=0.0018 Score=49.91 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+|+.+.+.
T Consensus 2 I~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999884
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.35 E-value=0.0076 Score=62.00 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=54.0
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC---CHHHHH------------HHHHHhhcCCCceEEEEEeCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF---DEFRIA------------KAIIEGLEGSEKKFFLILDDV 191 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~---~~~~~~------------~~i~~~~~~~~kr~LiVlDdv 191 (297)
++|+.|+|||+||+.+.+. +-..-...+-+..+.-. .+..+. ..+.+.+.. ...-+++||++
T Consensus 544 f~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDei 620 (821)
T CHL00095 544 FSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDEI 620 (821)
T ss_pred EECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh-CCCeEEEECCh
Confidence 6799999999999988872 21111122222222211 111111 011122211 23468999999
Q ss_pred CCCCccCHHHHHHHHhhhh-hhhceeeecCCCCeEEEEec
Q 043781 192 WTDDYSKWEPFHNCLMRVL-QEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 192 ~~~~~~~w~~l~~~l~~~~-~~~~~~~~~~~gs~iiiTTr 230 (297)
...+.+.++.|...|..+- ....-..++-..+-+|+||.
T Consensus 621 eka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 621 EKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred hhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 9888778888888876541 11111222234566777765
No 145
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.32 E-value=0.013 Score=60.36 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=44.1
Q ss_pred cccccCCcchHHHHHHHhccccccc------CCCceEE-EEeC-------CCCCHHHHHHHHHHhhcCCCceEEEEEeCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIE------NFDKRIW-VCVS-------DPFDEFRIAKAIIEGLEGSEKKFFLILDDV 191 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~------~F~~~~w-v~vs-------~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv 191 (297)
-++|.+|+||||||+.+.+. +.. -.+..+| +.++ ..-...+-++.++..+...+++.+|++|++
T Consensus 212 lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEi 289 (852)
T TIGR03345 212 ILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEA 289 (852)
T ss_pred eEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeCh
Confidence 37899999999999999884 321 1234444 2222 112344566677776654467899999999
Q ss_pred CCC
Q 043781 192 WTD 194 (297)
Q Consensus 192 ~~~ 194 (297)
...
T Consensus 290 h~l 292 (852)
T TIGR03345 290 HTL 292 (852)
T ss_pred HHh
Confidence 864
No 146
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.011 Score=57.86 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=43.1
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCce-------EEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKR-------IWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~-------~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
=+||+||+|||++|+.+.+ +..-.|-.+ -||. .-++.+++++++... .-..+|.||.+..
T Consensus 472 LlyGPPGC~KT~lAkalAn--e~~~nFlsvkgpEL~sk~vG-----eSEr~ir~iF~kAR~-~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 472 LLYGPPGCGKTLLAKALAN--EAGMNFLSVKGPELFSKYVG-----ESERAIREVFRKARQ-VAPCIIFFDEIDA 538 (693)
T ss_pred EEECCCCcchHHHHHHHhh--hhcCCeeeccCHHHHHHhcC-----chHHHHHHHHHHHhh-cCCeEEehhhHHh
Confidence 3689999999999999999 455556222 1332 346677778777766 3459999999975
No 147
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.034 Score=55.31 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=49.1
Q ss_pred ccccCCcchHHHHHHHhcccccccCC---------------------CceEEEEeCCCCCHHHHHHHHHHhhcCC---Cc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENF---------------------DKRIWVCVSDPFDEFRIAKAIIEGLEGS---EK 182 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F---------------------~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~k 182 (297)
++|..|+||||+|+.+.+.-...... .-.+.+.......+. -.+++++.+... ++
T Consensus 43 f~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd-~IReii~~a~~~p~~~~ 121 (620)
T PRK14948 43 FTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVD-NIRELIERAQFAPVQAR 121 (620)
T ss_pred EECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHH-HHHHHHHHHhhChhcCC
Confidence 68999999999999988742111100 012223322233343 345555554332 56
Q ss_pred eEEEEEeCCCCCCccCHHHHHHHHhh
Q 043781 183 KFFLILDDVWTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 183 r~LiVlDdv~~~~~~~w~~l~~~l~~ 208 (297)
+-++|+|++.......++.|...+..
T Consensus 122 ~KViIIDEad~Lt~~a~naLLK~LEe 147 (620)
T PRK14948 122 WKVYVIDECHMLSTAAFNALLKTLEE 147 (620)
T ss_pred ceEEEEECccccCHHHHHHHHHHHhc
Confidence 67899999988765677778777754
No 148
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.29 E-value=0.12 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=19.3
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|+.|+||||++..+...
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35678899999999999888774
No 149
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.27 E-value=0.011 Score=60.15 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=38.7
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeC----CCC-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPF-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
-++|++|+|||+||+.+.+. ....| +.+..+ ... .....++.++..... ....+|+||++..
T Consensus 491 LL~GppGtGKT~lakalA~e--~~~~f---i~v~~~~l~~~~vGese~~i~~~f~~A~~-~~p~iifiDEid~ 557 (733)
T TIGR01243 491 LLFGPPGTGKTLLAKAVATE--SGANF---IAVRGPEILSKWVGESEKAIREIFRKARQ-AAPAIIFFDEIDA 557 (733)
T ss_pred EEECCCCCCHHHHHHHHHHh--cCCCE---EEEehHHHhhcccCcHHHHHHHHHHHHHh-cCCEEEEEEChhh
Confidence 36899999999999999983 43333 222211 111 123345555554433 5678999999964
No 150
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.25 E-value=0.032 Score=47.94 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=30.0
Q ss_pred cccccccCCcchHHHHHHHhcccccccCC------CceEEEEeCCCCCHHHH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENF------DKRIWVCVSDPFDEFRI 169 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~ 169 (297)
...|+|.+|+|||+|+..+.... ...- ...+|+.....++..++
T Consensus 21 v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred EEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHH
Confidence 34689999999999998887632 1122 45678877666655443
No 151
>CHL00176 ftsH cell division protein; Validated
Probab=96.24 E-value=0.0045 Score=61.56 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=37.1
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC-C-----C-HHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-F-----D-EFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~-----~-~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
.-++|++|+|||+||+.+.+. ..-+| +.++.. + . ...-++.++.+... ....+|+||++..
T Consensus 219 VLL~GPpGTGKT~LAralA~e--~~~p~-----i~is~s~f~~~~~g~~~~~vr~lF~~A~~-~~P~ILfIDEID~ 286 (638)
T CHL00176 219 VLLVGPPGTGKTLLAKAIAGE--AEVPF-----FSISGSEFVEMFVGVGAARVRDLFKKAKE-NSPCIVFIDEIDA 286 (638)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCCe-----eeccHHHHHHHhhhhhHHHHHHHHHHHhc-CCCcEEEEecchh
Confidence 458899999999999999884 22222 222211 0 0 11223344444433 5789999999964
No 152
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.24 E-value=0.43 Score=46.00 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.9
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|+.|+||||++.++...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 45779999999999999988874
No 153
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.23 E-value=0.46 Score=45.13 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=17.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...++|++|+||||++..+..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567899999999998877765
No 154
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.22 E-value=0.018 Score=47.14 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=55.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC--CCCHHH----------------HHH-HHHHhhcCCCceEE
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD--PFDEFR----------------IAK-AIIEGLEGSEKKFF 185 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~----------------~~~-~i~~~~~~~~kr~L 185 (297)
..|+|..|+|||||.+.+... .......+++.-.. ..+..+ .++ .++..+. .+.-+
T Consensus 29 ~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~--~~p~i 103 (163)
T cd03216 29 HALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALA--RNARL 103 (163)
T ss_pred EEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHh--cCCCE
Confidence 468899999999999999873 22334444442110 011111 111 1122222 57788
Q ss_pred EEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHH
Q 043781 186 LILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHL 238 (297)
Q Consensus 186 iVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v 238 (297)
++||+--.. |....+.+...+... ...|..||++|++.+.....
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~---------~~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRL---------RAQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHH---------HHCCCEEEEEeCCHHHHHHh
Confidence 999998654 323344455555442 13467788999865544443
No 155
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.21 E-value=0.072 Score=44.32 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=55.2
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEE------EeCCCC--CHHHHHH-HHHHhhcCCCceEEEEEeCCCCC
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWV------CVSDPF--DEFRIAK-AIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv------~vs~~~--~~~~~~~-~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
...|+|..|+|||||.+.+..-.. .....+++ .+.+.. +.-+-++ .++..+. .+.=+++||.--..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~--~~p~lllLDEPts~ 101 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALL--RNATFYLFDEPSAY 101 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHh--cCCCEEEEECCccc
Confidence 356899999999999999988422 22222222 123332 2211111 2333333 46778999988654
Q ss_pred -CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHH
Q 043781 195 -DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHL 238 (297)
Q Consensus 195 -~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v 238 (297)
+....+.+...+..... ..+..||++|++.+....+
T Consensus 102 LD~~~~~~l~~~l~~~~~--------~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 102 LDIEQRLNAARAIRRLSE--------EGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred CCHHHHHHHHHHHHHHHH--------cCCCEEEEEECCHHHHHHh
Confidence 22233334444443211 2236788888865544444
No 156
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.20 E-value=0.017 Score=49.92 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=31.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccC----CCceEEEEeCCCCCHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIEN----FDKRIWVCVSDPFDEFRI 169 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~ 169 (297)
..|+|.+|+|||+|+.++.-....... -...+|+.....++..++
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 468999999999999988753222221 357889987776665443
No 157
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.18 E-value=0.021 Score=58.03 Aligned_cols=67 Identities=27% Similarity=0.308 Sum_probs=42.4
Q ss_pred cccccCCcchHHHHHHHhcccc---cccCC-CceEEE-EeC------C-CCCHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKD---VIENF-DKRIWV-CVS------D-PFDEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~---~~~~F-~~~~wv-~vs------~-~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
-++|.+|+|||+||+.+.+.-. +...+ +..+|. ..+ . .-...+-++.+++.+.. .++.+|++|++..
T Consensus 207 lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~-~~~~ILfiDEih~ 285 (731)
T TIGR02639 207 LLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK-EPNAILFIDEIHT 285 (731)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhc-cCCeEEEEecHHH
Confidence 4789999999999999988421 11111 344553 211 1 11344566777776644 3578999999974
No 158
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.17 E-value=0.013 Score=55.70 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+|+|+.|+||||||+.+..
T Consensus 365 lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred EEEECCCCccHHHHHHHHHc
Confidence 47999999999999999986
No 159
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.15 E-value=0.033 Score=56.09 Aligned_cols=93 Identities=22% Similarity=0.245 Sum_probs=63.0
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHhhcCC------------------------
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS------------------------ 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~~~~~------------------------ 180 (297)
-|-.+.|-|||||+-.... +.. .=..+.|.+....- +...++..++.+++..
T Consensus 41 li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 41 LISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred EEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 3568999999999988865 111 22357899876643 5566666666666532
Q ss_pred ----------CceEEEEEeCCCCCCccCHHH-HHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 181 ----------EKKFFLILDDVWTDDYSKWEP-FHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 181 ----------~kr~LiVlDdv~~~~~~~w~~-l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
.++.++||||.........+. ++..+... ..+=.+|+|||.
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~----------P~~l~lvv~SR~ 169 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA----------PENLTLVVTSRS 169 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC----------CCCeEEEEEecc
Confidence 778999999998764344443 54444442 566789999984
No 160
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.12 E-value=0.0081 Score=61.01 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=46.9
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC---CHHHHHH------------HHHHhhcCCCceEEEEEeC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF---DEFRIAK------------AIIEGLEGSEKKFFLILDD 190 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~---~~~~~~~------------~i~~~~~~~~kr~LiVlDd 190 (297)
-++|++|+|||+||+.+... .. ...+.+..+... .+..+.. .+.+.+.. ...-+|+||+
T Consensus 488 lf~Gp~GvGKT~lA~~la~~--l~---~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-~p~~VvllDE 561 (731)
T TIGR02639 488 LFTGPTGVGKTELAKQLAEA--LG---VHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-HPHCVLLLDE 561 (731)
T ss_pred EEECCCCccHHHHHHHHHHH--hc---CCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHh-CCCeEEEEec
Confidence 47799999999999999883 32 223344433311 1111110 11111111 3456999999
Q ss_pred CCCCCccCHHHHHHHHhhh
Q 043781 191 VWTDDYSKWEPFHNCLMRV 209 (297)
Q Consensus 191 v~~~~~~~w~~l~~~l~~~ 209 (297)
+...+.+.++.|...+..+
T Consensus 562 ieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 562 IEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred hhhcCHHHHHHHHHhhccC
Confidence 9988877787777777554
No 161
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.11 E-value=0.0083 Score=55.37 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=43.3
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CC-CHHHHHHHHHHhhc----CCCceEEEEEeCCCC
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PF-DEFRIAKAIIEGLE----GSEKKFFLILDDVWT 193 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~-~~~~~~~~i~~~~~----~~~kr~LiVlDdv~~ 193 (297)
...|||++|+|||.+|+.+++. ..-.| +-+..+. .. ..++.+++++.... ..++.++|++|++..
T Consensus 150 gllL~GPPGcGKTllAraiA~e--lg~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKK--MGIEP---IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH--cCCCe---EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 3578999999999999999994 44333 2222221 11 34556666655443 236899999999974
No 162
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.66 Score=43.95 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=18.9
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
....++|..|+||||++..+..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999987765
No 163
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.08 E-value=0.013 Score=52.29 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=51.1
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEE-EEeCCCCCHH----------HHHHHHHHhhcCCCce-EEEEEeCCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIW-VCVSDPFDEF----------RIAKAIIEGLEGSEKK-FFLILDDVWTD 194 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~----------~~~~~i~~~~~~~~kr-~LiVlDdv~~~ 194 (297)
.+|++|.|||+-|..+...---.+.|.+++- .++|..-... .+....-...+.+.++ =.+|||+....
T Consensus 62 FyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm 141 (346)
T KOG0989|consen 62 FYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM 141 (346)
T ss_pred eeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh
Confidence 6799999999999887773222445655542 3455432221 1111111111112344 47889999998
Q ss_pred CccCHHHHHHHHhhh
Q 043781 195 DYSKWEPFHNCLMRV 209 (297)
Q Consensus 195 ~~~~w~~l~~~l~~~ 209 (297)
-.+.|..|+..+.+.
T Consensus 142 tsdaq~aLrr~mE~~ 156 (346)
T KOG0989|consen 142 TSDAQAALRRTMEDF 156 (346)
T ss_pred hHHHHHHHHHHHhcc
Confidence 778999999998764
No 164
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.08 E-value=0.015 Score=57.44 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=55.3
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC------CceEEEEEeCCCCCCccCHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS------EKKFFLILDDVWTDDYSKWE 200 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~------~kr~LiVlDdv~~~~~~~w~ 200 (297)
+.|++|+||||||..|+++. .| .++=|++|+.-....+-..|...+... ++..-||+|.+.-.....-+
T Consensus 331 L~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vd 405 (877)
T KOG1969|consen 331 LCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVD 405 (877)
T ss_pred eecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHH
Confidence 67999999999999999852 23 245578888888887777777766543 67888999999876433344
Q ss_pred HHHHHHh
Q 043781 201 PFHNCLM 207 (297)
Q Consensus 201 ~l~~~l~ 207 (297)
.|...+.
T Consensus 406 vilslv~ 412 (877)
T KOG1969|consen 406 VILSLVK 412 (877)
T ss_pred HHHHHHH
Confidence 5555553
No 165
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.03 E-value=0.021 Score=49.45 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=53.7
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCC-CccCHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTD-DYSKWEPFHN 204 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~-~~~~w~~l~~ 204 (297)
=+||.-|.||+.|++.+.+ .+....-. -|.|++. ++ .-+-.|++.+....+||+|..||+.-+ +.+.+..|+.
T Consensus 89 LLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-dl-~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs 162 (287)
T COG2607 89 LLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-DL-ATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKS 162 (287)
T ss_pred EEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-HH-hhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHH
Confidence 3899999999999999998 45544433 3444322 11 123355666666689999999999754 3357778888
Q ss_pred HHhhh
Q 043781 205 CLMRV 209 (297)
Q Consensus 205 ~l~~~ 209 (297)
.|..+
T Consensus 163 ~LeG~ 167 (287)
T COG2607 163 ALEGG 167 (287)
T ss_pred HhcCC
Confidence 88654
No 166
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0029 Score=57.61 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=78.6
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-------CHHHHHHHHHHhhcCCCceEEEEEeCCCCC-----
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-------DEFRIAKAIIEGLEGSEKKFFLILDDVWTD----- 194 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~----- 194 (297)
+||++|.|||-||+.|++ +....| +.|..+- .-.++.++++.-... .....|.+|.+...
T Consensus 190 LYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgSElVqKYiGEGaRlVRelF~lAre-kaPsIIFiDEIDAIg~kR~ 261 (406)
T COG1222 190 LYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGSELVQKYIGEGARLVRELFELARE-KAPSIIFIDEIDAIGAKRF 261 (406)
T ss_pred eeCCCCCcHHHHHHHHHh--ccCceE-----EEeccHHHHHHHhccchHHHHHHHHHHhh-cCCeEEEEechhhhhcccc
Confidence 689999999999999999 455555 3322211 224566666655444 78999999999742
Q ss_pred ------CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHH-HHHHHhhCCCccccCCccchh---hhhhhhhc
Q 043781 195 ------DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKL-RHLTLTLGLRAKFPVSIFDAK---KIWGWEVF 264 (297)
Q Consensus 195 ------~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~-~~v~~~~~~~~~~~l~~l~~~---~lf~~~~f 264 (297)
+.+.-..+...|.. +.+|. ....-|||.+|...+.. -.+.........+.+..-+.. ++|.-+.-
T Consensus 262 d~~t~gDrEVQRTmleLL~q-lDGFD----~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr 336 (406)
T COG1222 262 DSGTSGDREVQRTMLELLNQ-LDGFD----PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR 336 (406)
T ss_pred cCCCCchHHHHHHHHHHHHh-ccCCC----CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh
Confidence 11111223333322 22231 13445788877644442 223333334444444433322 33333332
Q ss_pred cCCCCCCchhhHhhhhhhccccccccchhh
Q 043781 265 GRNTSTRPGMVSRYLMAEFCEPVCSVKAWC 294 (297)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~c~~~c~~~~~~ 294 (297)
+-+...+- -...+.-....++|.-++|.|
T Consensus 337 kM~l~~dv-d~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 337 KMNLADDV-DLELLARLTEGFSGADLKAIC 365 (406)
T ss_pred hccCccCc-CHHHHHHhcCCCchHHHHHHH
Confidence 22222221 111111122357777788887
No 167
>PRK04132 replication factor C small subunit; Provisional
Probab=96.02 E-value=0.044 Score=56.06 Aligned_cols=115 Identities=12% Similarity=0.019 Sum_probs=70.5
Q ss_pred cCCcchHHHHHHHhcccccccCCC-ceEEEEeCCCCCHHHHHHHHHHhh----cCC-CceEEEEEeCCCCCCccCHHHHH
Q 043781 130 MGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAIIEGL----EGS-EKKFFLILDDVWTDDYSKWEPFH 203 (297)
Q Consensus 130 ~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~~----~~~-~kr~LiVlDdv~~~~~~~w~~l~ 203 (297)
+.++||||+|..+.+.- ..+.++ ..+-++.|+..++..+. +++..+ ... .+.-++|||++.....+..+.|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALL 651 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVIR-EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALR 651 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHH
Confidence 78899999999999841 112221 34566777765555443 333222 111 25689999999998766777888
Q ss_pred HHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-CccccCCccchhhhh
Q 043781 204 NCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAKFPVSIFDAKKIW 259 (297)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~~~l~~l~~~~lf 259 (297)
..+... ...+++|++|...+ .+..+... ..++++.+++..++.
T Consensus 652 k~lEep----------~~~~~FILi~N~~~---kIi~tIrSRC~~i~F~~ls~~~i~ 695 (846)
T PRK04132 652 RTMEMF----------SSNVRFILSCNYSS---KIIEPIQSRCAIFRFRPLRDEDIA 695 (846)
T ss_pred HHhhCC----------CCCeEEEEEeCChh---hCchHHhhhceEEeCCCCCHHHHH
Confidence 777642 45667777665432 23222221 257788888766654
No 168
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.02 E-value=0.017 Score=51.24 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=48.3
Q ss_pred ccccccCCcchHHHHHHHhccccc--ccCCCceEEEEeCCCC-CHHHHHHHHHHhhcCC---------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDV--IENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS--------------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------------------- 180 (297)
.+|+|-.|+|||+|+..+.++..+ +.+-+.++++-+.+.. .+.++..++...-...
T Consensus 72 ~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~ 151 (276)
T cd01135 72 IPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPR 151 (276)
T ss_pred EEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHH
Confidence 478999999999999988875331 1234677788776654 4566666665543221
Q ss_pred -------------CceEEEEEeCCCCC
Q 043781 181 -------------EKKFFLILDDVWTD 194 (297)
Q Consensus 181 -------------~kr~LiVlDdv~~~ 194 (297)
+++.|+++||+-..
T Consensus 152 ~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 152 MALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 68999999998543
No 169
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.067 Score=46.43 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=34.0
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL 244 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~ 244 (297)
-+.=+||+|..-+. |...-.++...|.+.-. ..+-.+|+.|++-....++|....+
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~--------~~~lt~l~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKK--------ERGLTYLFISHDLALVEHMCDRIAV 214 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHH--------hcCceEEEEeCcHHHHHHHhhheee
Confidence 66778899987653 11111223333332211 4566788899988888888876443
No 170
>PRK13695 putative NTPase; Provisional
Probab=96.00 E-value=0.0064 Score=50.23 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=18.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|.|.+|+|||||++.+++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999998764
No 171
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.95 E-value=0.031 Score=53.93 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=37.9
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CC-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PF-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
=++|++|+|||.+|+.+.+. ..-.| +-+..+. .. .....+++++..... ..+++|++|++..
T Consensus 263 LL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~l~~~~vGese~~l~~~f~~A~~-~~P~IL~IDEID~ 329 (489)
T CHL00195 263 LLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGKLFGGIVGESESRMRQMIRIAEA-LSPCILWIDEIDK 329 (489)
T ss_pred EEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHHhcccccChHHHHHHHHHHHHHh-cCCcEEEehhhhh
Confidence 47899999999999999984 33222 1111111 11 123344555543332 5789999999964
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.94 E-value=0.025 Score=58.41 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=43.0
Q ss_pred cccccCCcchHHHHHHHhcccccccC------CCceEEE-EeCC-------CCCHHHHHHHHHHhhcCCCceEEEEEeCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIEN------FDKRIWV-CVSD-------PFDEFRIAKAIIEGLEGSEKKFFLILDDV 191 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~------F~~~~wv-~vs~-------~~~~~~~~~~i~~~~~~~~kr~LiVlDdv 191 (297)
-++|.+|+|||+||+.+... +... ....+|. .++. .-...+-++.++..+...+++.+|++|++
T Consensus 203 lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEi 280 (857)
T PRK10865 203 VLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDEL 280 (857)
T ss_pred EEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecH
Confidence 37899999999999998884 3211 1333333 2222 11334556667766544467899999999
Q ss_pred CCC
Q 043781 192 WTD 194 (297)
Q Consensus 192 ~~~ 194 (297)
..-
T Consensus 281 h~l 283 (857)
T PRK10865 281 HTM 283 (857)
T ss_pred HHh
Confidence 754
No 173
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.94 E-value=0.066 Score=52.67 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=47.8
Q ss_pred ccccCCcchHHHHHHHhccccc--------------------ccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---Cce
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV--------------------IENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EKK 183 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~--------------------~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~kr 183 (297)
++|+.|+||||+|+.+.+.-.. ..+++. +.+..+.+..+.+ .++|.+.+... +++
T Consensus 43 f~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv-~eidaas~~~vd~-ir~i~~~v~~~p~~~~~ 120 (559)
T PRK05563 43 FSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDV-IEIDAASNNGVDE-IRDIRDKVKYAPSEAKY 120 (559)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCe-EEeeccccCCHHH-HHHHHHHHhhCcccCCe
Confidence 5899999999999888763111 113332 3344433334333 33444443322 677
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~ 208 (297)
-++|+|++.......+..|...+..
T Consensus 121 kViIIDE~~~Lt~~a~naLLKtLEe 145 (559)
T PRK05563 121 KVYIIDEVHMLSTGAFNALLKTLEE 145 (559)
T ss_pred EEEEEECcccCCHHHHHHHHHHhcC
Confidence 7889999987654567777666643
No 174
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.92 E-value=0.077 Score=42.42 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=55.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEE------EeCCCCCHHHHHH-HHHHhhcCCCceEEEEEeCCCCC-Cc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWV------CVSDPFDEFRIAK-AIIEGLEGSEKKFFLILDDVWTD-DY 196 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv------~vs~~~~~~~~~~-~i~~~~~~~~kr~LiVlDdv~~~-~~ 196 (297)
..|+|..|.|||||++.+..... .....+|+ ......+.-+..+ .|+..+- .+.=+++||+--.. |.
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~--~~p~illlDEP~~~LD~ 103 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLL--ENPNLLLLDEPTNHLDL 103 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHh--cCCCEEEEeCCccCCCH
Confidence 46889999999999999988422 22233332 1111133333322 2344443 36678899988654 32
Q ss_pred cCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHH
Q 043781 197 SKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHL 238 (297)
Q Consensus 197 ~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v 238 (297)
...+.+...+... +..||++|+..+.....
T Consensus 104 ~~~~~l~~~l~~~------------~~til~~th~~~~~~~~ 133 (144)
T cd03221 104 ESIEALEEALKEY------------PGTVILVSHDRYFLDQV 133 (144)
T ss_pred HHHHHHHHHHHHc------------CCEEEEEECCHHHHHHh
Confidence 3444555555431 24688888865544333
No 175
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.90 E-value=0.017 Score=54.84 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||++.+...
T Consensus 168 i~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 168 IGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 368899999999999998874
No 176
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.85 E-value=0.057 Score=49.73 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=48.1
Q ss_pred HHHHhhcCC---CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-Ccc
Q 043781 172 AIIEGLEGS---EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAK 247 (297)
Q Consensus 172 ~i~~~~~~~---~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~ 247 (297)
++.+.+... +++=++|+|++...+.+.++.|...+.. ..+++.+|++|...+ .+..+.-. ...
T Consensus 119 ~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE----------Pp~~t~fiL~t~~~~---~LLpTI~SRcq~ 185 (342)
T PRK06964 119 ALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE----------PPPGTVFLLVSARID---RLLPTILSRCRQ 185 (342)
T ss_pred HHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC----------CCcCcEEEEEECChh---hCcHHHHhcCEE
Confidence 455555433 6666888999999887888888888865 256666666665432 22222111 256
Q ss_pred ccCCccchhhhhhh
Q 043781 248 FPVSIFDAKKIWGW 261 (297)
Q Consensus 248 ~~l~~l~~~~lf~~ 261 (297)
+++.+++.+++..|
T Consensus 186 i~~~~~~~~~~~~~ 199 (342)
T PRK06964 186 FPMTVPAPEAAAAW 199 (342)
T ss_pred EEecCCCHHHHHHH
Confidence 67777776665444
No 177
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.85 E-value=0.0091 Score=61.51 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=53.2
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC---CH---------------HHHHHHHHHhhcCCCceEEEE
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF---DE---------------FRIAKAIIEGLEGSEKKFFLI 187 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~---~~---------------~~~~~~i~~~~~~~~kr~LiV 187 (297)
-++|++|+|||.||+.+... +-......+-+.++... ++ ...+...+.+ ...-+|+
T Consensus 600 lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~----~p~svvl 673 (852)
T TIGR03345 600 LLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR----KPYSVVL 673 (852)
T ss_pred EEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh----CCCcEEE
Confidence 47799999999999877763 21111111112222110 00 0111111111 4567999
Q ss_pred EeCCCCCCccCHHHHHHHHhhhh-hhhceeeecCCCCeEEEEec
Q 043781 188 LDDVWTDDYSKWEPFHNCLMRVL-QEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 188 lDdv~~~~~~~w~~l~~~l~~~~-~~~~~~~~~~~gs~iiiTTr 230 (297)
||++...+.+.++.|...+.++. ....-..++-..+-||+||.
T Consensus 674 lDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 674 LDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred EechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 99998877777887877776541 11111122224566777775
No 178
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.074 Score=48.44 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=49.0
Q ss_pred HHHHHHhhcCC---CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-C
Q 043781 170 AKAIIEGLEGS---EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-R 245 (297)
Q Consensus 170 ~~~i~~~~~~~---~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~ 245 (297)
.++|.+.+... +++=++|+|++...+....+.|...+..- . .+.+|++|... ..+..+... .
T Consensus 109 ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP----------p-~~~fILi~~~~---~~Ll~TI~SRc 174 (314)
T PRK07399 109 IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP----------G-NGTLILIAPSP---ESLLPTIVSRC 174 (314)
T ss_pred HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC----------C-CCeEEEEECCh---HhCcHHHHhhc
Confidence 34565555433 77889999999888767788888888651 3 44566666543 233332222 2
Q ss_pred ccccCCccchhhhhhh
Q 043781 246 AKFPVSIFDAKKIWGW 261 (297)
Q Consensus 246 ~~~~l~~l~~~~lf~~ 261 (297)
..+++.+++..++..|
T Consensus 175 q~i~f~~l~~~~~~~~ 190 (314)
T PRK07399 175 QIIPFYRLSDEQLEQV 190 (314)
T ss_pred eEEecCCCCHHHHHHH
Confidence 6778888887776444
No 179
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.074 Score=42.98 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=57.0
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC-----------------CCHHHHHH-HHHHhhcCCCceEE
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-----------------FDEFRIAK-AIIEGLEGSEKKFF 185 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----------------~~~~~~~~-~i~~~~~~~~kr~L 185 (297)
...|+|..|.|||||.+.+.... ......+++..... .+.-+..+ .|+..+. ...=+
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~--~~~~i 101 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALL--LNPDL 101 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHh--cCCCE
Confidence 34689999999999999999842 22334444321100 11111111 1333333 46788
Q ss_pred EEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHH
Q 043781 186 LILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHL 238 (297)
Q Consensus 186 iVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v 238 (297)
++||+.-.. |......+...+.... .++..+|++|+..+.....
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~---------~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELA---------EEGRTVIIVTHDPELAELA 146 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCHHHHHHh
Confidence 999998764 2233444555554421 3357789999876554444
No 180
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.81 E-value=0.01 Score=60.13 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=46.5
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC---CHHHHHH------------HHHHhhcCCCceEEEEEeC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF---DEFRIAK------------AIIEGLEGSEKKFFLILDD 190 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~---~~~~~~~------------~i~~~~~~~~kr~LiVlDd 190 (297)
-++|++|+|||+||+.+... ....| +.+..+... .+.+++. .+-+.+.. ....+|+||+
T Consensus 492 Lf~GP~GvGKT~lAk~LA~~--l~~~~---i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~-~p~sVlllDE 565 (758)
T PRK11034 492 LFAGPTGVGKTEVTVQLSKA--LGIEL---LRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDE 565 (758)
T ss_pred EEECCCCCCHHHHHHHHHHH--hCCCc---EEeechhhcccccHHHHcCCCCCcccccccchHHHHHHh-CCCcEEEecc
Confidence 46799999999999999884 32222 233333211 1222211 01111111 3456999999
Q ss_pred CCCCCccCHHHHHHHHhhh
Q 043781 191 VWTDDYSKWEPFHNCLMRV 209 (297)
Q Consensus 191 v~~~~~~~w~~l~~~l~~~ 209 (297)
+...+.+.++.|...|..+
T Consensus 566 ieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 566 IEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred HhhhhHHHHHHHHHHHhcC
Confidence 9998777788887777654
No 181
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.81 E-value=0.0048 Score=47.66 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=18.1
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
.|.|.+|+||||||+.+...
T Consensus 2 ~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999885
No 182
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.78 E-value=0.017 Score=55.19 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=45.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHhhcC------------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEG------------------------ 179 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~~~~------------------------ 179 (297)
.+|+|..|+|||||+.++.++.. +.+-+.++++-+.... .+.++..++...-..
T Consensus 146 ~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a 224 (461)
T PRK12597 146 TGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTG 224 (461)
T ss_pred EEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHH
Confidence 47899999999999988887533 2355777777655443 345555555443211
Q ss_pred ---------C-CceEEEEEeCCC
Q 043781 180 ---------S-EKKFFLILDDVW 192 (297)
Q Consensus 180 ---------~-~kr~LiVlDdv~ 192 (297)
. ++..|+++|++-
T Consensus 225 ~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 225 LTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHhcCCceEEEeccch
Confidence 1 799999999994
No 183
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.78 E-value=0.046 Score=49.78 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=31.8
Q ss_pred cccccccCCcchHHHHHHHhccccccc----CCCceEEEEeCCCCCHHHHH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIA 170 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~ 170 (297)
...|+|.+|+|||+|+.++.-...... .=...+|+.....|+..++.
T Consensus 98 iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~ 148 (313)
T TIGR02238 98 ITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR 148 (313)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH
Confidence 346899999999999977654222211 11367788887777766654
No 184
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.75 E-value=0.067 Score=48.76 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=73.0
Q ss_pred ccccCCcchHHHHHHHhcccc-------------------cccCCCceEEEEe---CCCCCHHHHHHHHHHhhcCC---C
Q 043781 127 VRGMGGIGKTTLAQFAYNDKD-------------------VIENFDKRIWVCV---SDPFDEFRIAKAIIEGLEGS---E 181 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~-------------------~~~~F~~~~wv~v---s~~~~~~~~~~~i~~~~~~~---~ 181 (297)
+.|+.|+||+++|..+..--- ...|-|.. |+.- ++...+.++ +++.+.+... +
T Consensus 30 ~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~~~~I~vdqi-R~l~~~~~~~~~~~ 107 (319)
T PRK06090 30 LQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH-VIKPEKEGKSITVEQI-RQCNRLAQESSQLN 107 (319)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecCcCCCcCCHHHH-HHHHHHHhhCcccC
Confidence 679999999999987765210 01233332 3332 234556665 4554444332 5
Q ss_pred ceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-CccccCCccchhhhhh
Q 043781 182 KKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAKFPVSIFDAKKIWG 260 (297)
Q Consensus 182 kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~~~l~~l~~~~lf~ 260 (297)
++=++|+|++.....+..+.|...+.. ...++.+|++|.+. ..+..+.-. ...+++..++.++...
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEE----------Pp~~t~fiL~t~~~---~~lLpTI~SRCq~~~~~~~~~~~~~~ 174 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEE----------PAPNCLFLLVTHNQ---KRLLPTIVSRCQQWVVTPPSTAQAMQ 174 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcC----------CCCCeEEEEEECCh---hhChHHHHhcceeEeCCCCCHHHHHH
Confidence 666889999998877788888888865 24556666666543 233322222 2566788877776555
Q ss_pred hh
Q 043781 261 WE 262 (297)
Q Consensus 261 ~~ 262 (297)
|-
T Consensus 175 ~L 176 (319)
T PRK06090 175 WL 176 (319)
T ss_pred HH
Confidence 53
No 185
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.75 E-value=0.039 Score=45.68 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||++.+..-
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 31 IALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468899999999999999885
No 186
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.014 Score=57.68 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=43.4
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCC--CCCHHHHHHHHHHhhcCC--CceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD--PFDEFRIAKAIIEGLEGS--EKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~~~~~--~kr~LiVlDdv~~ 193 (297)
|.|..|+|||+||+.+++... +++.-...+|+.+. .-....+++.+.+-+... ...-+|||||+.-
T Consensus 436 l~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 436 LNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred EeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence 569999999999999999533 44443444554433 234555555444433322 7899999999963
No 187
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.74 E-value=0.017 Score=52.92 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.4
Q ss_pred ceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEec
Q 043781 182 KKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 182 kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
..-+||+|...+- .-.+++..+.+. |.||||++|--
T Consensus 351 ~~~FiIIDEaQNL---TpheikTiltR~----------G~GsKIVl~gd 386 (436)
T COG1875 351 PDSFIIIDEAQNL---TPHELKTILTRA----------GEGSKIVLTGD 386 (436)
T ss_pred ccceEEEehhhcc---CHHHHHHHHHhc----------cCCCEEEEcCC
Confidence 3567899999886 455788888886 99999999975
No 188
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.73 E-value=0.055 Score=55.30 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..-++|++|+||||+++.+..
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999997
No 189
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.12 Score=43.84 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=19.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||++.+...
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999974
No 190
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.70 E-value=0.093 Score=44.66 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||++.+...
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3578999999999999999874
No 191
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.70 E-value=0.02 Score=48.46 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=16.9
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+-|.|+.|+||||++..+..
T Consensus 4 ilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34789999999999987665
No 192
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.69 E-value=0.024 Score=47.98 Aligned_cols=85 Identities=20% Similarity=0.132 Sum_probs=45.6
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC----------------------Cce
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS----------------------EKK 183 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~----------------------~kr 183 (297)
-|.|.+|+||||+++.+... .... ...+.+......-...+.+. .+.. .+.
T Consensus 22 ~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L~~~----~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~ 94 (196)
T PF13604_consen 22 VLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKELREK----TGIEAQTIHSFLYRIPNGDDEGRPELPKK 94 (196)
T ss_dssp EEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHHHHH----HTS-EEEHHHHTTEECCEECCSSCC-TST
T ss_pred EEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHHHHh----hCcchhhHHHHHhcCCcccccccccCCcc
Confidence 46799999999999988773 3222 23444443333223333322 2221 234
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEe
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTS 229 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTT 229 (297)
-+||+|++.-.+...+..|....+ ..|+++|+.=
T Consensus 95 ~vliVDEasmv~~~~~~~ll~~~~------------~~~~klilvG 128 (196)
T PF13604_consen 95 DVLIVDEASMVDSRQLARLLRLAK------------KSGAKLILVG 128 (196)
T ss_dssp SEEEESSGGG-BHHHHHHHHHHS-------------T-T-EEEEEE
T ss_pred cEEEEecccccCHHHHHHHHHHHH------------hcCCEEEEEC
Confidence 699999998765444444444332 4467777754
No 193
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.68 E-value=0.02 Score=49.20 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=44.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHhhcCC-----------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS----------------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~~~~~----------------------- 180 (297)
..|+|.+|+|||+|+..+.++.. -+..+++.+.+.. .+.++.+++...-...
T Consensus 18 ~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a 93 (215)
T PF00006_consen 18 IGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTA 93 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHH
T ss_pred EEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccc
Confidence 46899999999999999988532 2344777776553 4556666554431111
Q ss_pred ----------CceEEEEEeCCC
Q 043781 181 ----------EKKFFLILDDVW 192 (297)
Q Consensus 181 ----------~kr~LiVlDdv~ 192 (297)
++..|+++||+-
T Consensus 94 ~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 94 LTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHTTSEEEEEEETHH
T ss_pred hhhhHHHhhcCCceeehhhhhH
Confidence 999999999994
No 194
>PTZ00202 tuzin; Provisional
Probab=95.68 E-value=0.031 Score=52.83 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=35.3
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcC
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG 179 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~ 179 (297)
...|.|++|+|||||++.+... .. + ..++.-+. +..+++..|+.+++.
T Consensus 288 ivvLtG~~G~GKTTLlR~~~~~--l~--~--~qL~vNpr--g~eElLr~LL~ALGV 335 (550)
T PTZ00202 288 IVVFTGFRGCGKSSLCRSAVRK--EG--M--PAVFVDVR--GTEDTLRSVVKALGV 335 (550)
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CC--c--eEEEECCC--CHHHHHHHHHHHcCC
Confidence 3458899999999999999973 22 2 13332222 779999999999985
No 195
>PHA02774 E1; Provisional
Probab=95.66 E-value=0.032 Score=54.34 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=52.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
.-|+|++|.|||.+|..+.+- .. -....||+....|-+..+. ..-++||||+-. ..|+.+..
T Consensus 437 iv~~GPP~TGKS~fa~sL~~~--L~--G~vi~fvN~~s~FwLqpl~-----------d~ki~vlDD~t~---~~w~y~d~ 498 (613)
T PHA02774 437 LVIYGPPDTGKSMFCMSLIKF--LK--GKVISFVNSKSHFWLQPLA-----------DAKIALLDDATH---PCWDYIDT 498 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hC--CCEEEEEECccccccchhc-----------cCCEEEEecCcc---hHHHHHHH
Confidence 358899999999999988872 22 1234566654444422222 344799999933 36776666
Q ss_pred HHhhhhhhhc-------eeeecCCCCeEEEEec
Q 043781 205 CLMRVLQEFA-------AIEVDGDENPLSLTST 230 (297)
Q Consensus 205 ~l~~~~~~~~-------~~~~~~~gs~iiiTTr 230 (297)
.|...+.+.. .-+..-..-++||||.
T Consensus 499 ~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN 531 (613)
T PHA02774 499 YLRNALDGNPVSIDCKHKAPVQIKCPPLLITSN 531 (613)
T ss_pred HHHHHcCCCcceeeecccCcccccCCCEEEecC
Confidence 6766543210 0001112467999995
No 196
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.65 E-value=0.81 Score=43.63 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=19.2
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+-++|.+|+||||++..+...
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34568899999999999888764
No 197
>PHA02244 ATPase-like protein
Probab=95.64 E-value=0.026 Score=52.27 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=49.2
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHH-----------HHHHhhcCCCceEEEEEeCCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK-----------AIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~-----------~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
-|+|.+|+|||+||+.+.+. ....| +.++...+...+.. .++.++ .+--+++||++...
T Consensus 123 LL~GppGtGKTtLA~aLA~~--lg~pf-----v~In~l~d~~~L~G~i~~~g~~~dgpLl~A~---~~GgvLiLDEId~a 192 (383)
T PHA02244 123 FLKGGAGSGKNHIAEQIAEA--LDLDF-----YFMNAIMDEFELKGFIDANGKFHETPFYEAF---KKGGLFFIDEIDAS 192 (383)
T ss_pred EEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecChHHHhhcccccccccccchHHHHHh---hcCCEEEEeCcCcC
Confidence 46799999999999999984 33222 22221111111100 111111 23459999999876
Q ss_pred CccCHHHHHHHHhhhhhh-hceeeecCCCCeEEEEec
Q 043781 195 DYSKWEPFHNCLMRVLQE-FAAIEVDGDENPLSLTST 230 (297)
Q Consensus 195 ~~~~w~~l~~~l~~~~~~-~~~~~~~~~gs~iiiTTr 230 (297)
..+....|...+....-. ..-.....++.++|+|+.
T Consensus 193 ~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN 229 (383)
T PHA02244 193 IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGN 229 (383)
T ss_pred CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeC
Confidence 544455555555322100 000111235678888876
No 198
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.60 E-value=0.016 Score=46.01 Aligned_cols=83 Identities=19% Similarity=0.101 Sum_probs=51.1
Q ss_pred cccccCCcchHHHHHHHhccccc-ccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDV-IENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
-|+|-.|+||+++|+.++....- ...|... +...+..+++++. +.--|+|+|+..-..+....|..
T Consensus 25 li~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---------~~~~~~~~~l~~a----~~gtL~l~~i~~L~~~~Q~~L~~ 91 (138)
T PF14532_consen 25 LITGEPGTGKSLLARALHRYSGRANGPFIVI---------DCASLPAELLEQA----KGGTLYLKNIDRLSPEAQRRLLD 91 (138)
T ss_dssp EEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---------CHHCTCHHHHHHC----TTSEEEEECGCCS-HHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---------chhhCcHHHHHHc----CCCEEEECChHHCCHHHHHHHHH
Confidence 47899999999999999985332 2233221 1111113444443 34457799998876555566666
Q ss_pred HHhhhhhhhceeeecCCCCeEEEEec
Q 043781 205 CLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 205 ~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
.+... .....|+|.||.
T Consensus 92 ~l~~~---------~~~~~RlI~ss~ 108 (138)
T PF14532_consen 92 LLKRQ---------ERSNVRLIASSS 108 (138)
T ss_dssp HHHHC---------TTTTSEEEEEEC
T ss_pred HHHhc---------CCCCeEEEEEeC
Confidence 66542 146679999987
No 199
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.064 Score=49.02 Aligned_cols=120 Identities=9% Similarity=0.019 Sum_probs=70.0
Q ss_pred ccccCCcchHHHHHHHhcccccc--------------------cCCCceEEEE--eCCCCCHHHHHHHHHHhhcCC---C
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI--------------------ENFDKRIWVC--VSDPFDEFRIAKAIIEGLEGS---E 181 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~--vs~~~~~~~~~~~i~~~~~~~---~ 181 (297)
+.|+.|+||+++|..+..----. .|-|. .++. .+....+.++ +++.+.+... +
T Consensus 29 f~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~~~I~id~i-R~l~~~~~~~~~~g 106 (325)
T PRK06871 29 FKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDF-HILEPIDNKDIGVDQV-REINEKVSQHAQQG 106 (325)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEccccCCCCCHHHH-HHHHHHHhhccccC
Confidence 67999999999998777631111 12222 2232 1223445444 3444444322 6
Q ss_pred ceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-CccccCCccchhhhhh
Q 043781 182 KKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAKFPVSIFDAKKIWG 260 (297)
Q Consensus 182 kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~~~l~~l~~~~lf~ 260 (297)
++=++|+|++........+.|...+.. ...++.+|++|...+ .+..+.-. ...+.+.+++.+++-.
T Consensus 107 ~~KV~iI~~a~~m~~~AaNaLLKtLEE----------Pp~~~~fiL~t~~~~---~llpTI~SRC~~~~~~~~~~~~~~~ 173 (325)
T PRK06871 107 GNKVVYIQGAERLTEAAANALLKTLEE----------PRPNTYFLLQADLSA---ALLPTIYSRCQTWLIHPPEEQQALD 173 (325)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhcC----------CCCCeEEEEEECChH---hCchHHHhhceEEeCCCCCHHHHHH
Confidence 777888999998876778888877765 255566777766432 33322221 2566777777666433
Q ss_pred h
Q 043781 261 W 261 (297)
Q Consensus 261 ~ 261 (297)
|
T Consensus 174 ~ 174 (325)
T PRK06871 174 W 174 (325)
T ss_pred H
Confidence 3
No 200
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.56 E-value=0.024 Score=53.84 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=47.9
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHhhcCC-----------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS----------------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~~~~~----------------------- 180 (297)
.+|+|..|+|||+|+..+..+.. +.+-+.++++-+.... .+.++.+++...-...
T Consensus 141 ~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a 219 (449)
T TIGR03305 141 AGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTA 219 (449)
T ss_pred EEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHH
Confidence 36889999999999988877632 2344678888776554 3456666655432211
Q ss_pred -----------CceEEEEEeCCCC
Q 043781 181 -----------EKKFFLILDDVWT 193 (297)
Q Consensus 181 -----------~kr~LiVlDdv~~ 193 (297)
++..|+++||+-.
T Consensus 220 ~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 220 LTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHhcCCceEEEecChHH
Confidence 8999999999954
No 201
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.041 Score=45.34 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=19.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|.|||||.+.+...
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999884
No 202
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.56 E-value=0.071 Score=44.31 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=18.1
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|+.|+|||||.+.+..
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999863
No 203
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.53 E-value=0.049 Score=46.63 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=30.9
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLT 239 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~ 239 (297)
.+.-+++||.--.. |....+.+...+... ..+..||++|++.+....++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~----------~~~~tii~~sH~~~~~~~~~ 199 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEV----------RKGRSIILTTHSMDEAEALC 199 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHH----------hcCCEEEEEcCCHHHHHHhc
Confidence 78889999998765 323344455555543 23467889998765544443
No 204
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.53 E-value=1.1 Score=45.64 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=19.2
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|+.|+||||++.++...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 35679999999999999888763
No 205
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.52 E-value=0.044 Score=51.76 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=39.3
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CCCHHHHHHHHHHhhcCC---CceEEEEEeCCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PFDEFRIAKAIIEGLEGS---EKKFFLILDDVWTDD 195 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~~~~~~~~i~~~~~~~---~kr~LiVlDdv~~~~ 195 (297)
.-++|++|+|||+||+.+.. .....|-..-...... ..++..++..++...... ..+-+|+||++....
T Consensus 111 iLl~Gp~GtGKT~lAr~lA~--~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 111 ILLIGPTGSGKTLLAQTLAR--ILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred EEEEcCCCCCHHHHHHHHHH--HhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 34789999999999999987 3433441110000111 113445554444332111 456799999998763
No 206
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.041 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|.|||||++.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999863
No 207
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.50 E-value=0.039 Score=50.38 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+.+.
T Consensus 72 i~I~G~sG~GKTtLl~~Ia~~ 92 (326)
T cd01136 72 LGIFAGSGVGKSTLLGMIARG 92 (326)
T ss_pred EEEECCCCCChHHHHHHHhCC
Confidence 468899999999999999874
No 208
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.48 E-value=0.032 Score=51.33 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=35.3
Q ss_pred ccccccCCcchHHHHHHHhccccccc----CCCceEEEEeCCCCCHHHHHHHHHHhhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLE 178 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~~~ 178 (297)
..|+|.+|+|||+|+..++-...... .-...+|+.....|+..++.+ ++++++
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 46899999999999987754322211 123678998888888776543 444443
No 209
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.44 E-value=0.093 Score=47.86 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=70.2
Q ss_pred ccccCCcchHHHHHHHhcccccc-----------------cCCCceEEEE-eCC--------CCCHHHHHHHHHHhhcCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI-----------------ENFDKRIWVC-VSD--------PFDEFRIAKAIIEGLEGS 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~-----------------~~F~~~~wv~-vs~--------~~~~~~~~~~i~~~~~~~ 180 (297)
+.|+.|+||+++|..+.+.---. .|-| ..|+. ... ...+. -.+++.+.+...
T Consensus 31 f~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~k~~~~I~id-qIR~l~~~~~~~ 108 (319)
T PRK08769 31 ICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGDKLRTEIVIE-QVREISQKLALT 108 (319)
T ss_pred eECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccccccccccHH-HHHHHHHHHhhC
Confidence 67999999999997776531111 1222 23332 111 11222 344555544433
Q ss_pred ---CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-CccccCCccchh
Q 043781 181 ---EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAKFPVSIFDAK 256 (297)
Q Consensus 181 ---~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~~~l~~l~~~ 256 (297)
+++=++|+|++...+.+.-+.|...+.. ...++.+|++|...+ .+..+.-. ...+++..++.+
T Consensus 109 p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE----------Pp~~~~fiL~~~~~~---~lLpTIrSRCq~i~~~~~~~~ 175 (319)
T PRK08769 109 PQYGIAQVVIVDPADAINRAACNALLKTLEE----------PSPGRYLWLISAQPA---RLPATIRSRCQRLEFKLPPAH 175 (319)
T ss_pred cccCCcEEEEeccHhhhCHHHHHHHHHHhhC----------CCCCCeEEEEECChh---hCchHHHhhheEeeCCCcCHH
Confidence 6778999999988765666667777754 245677777776432 23222221 256677777777
Q ss_pred hhhhhhh
Q 043781 257 KIWGWEV 263 (297)
Q Consensus 257 ~lf~~~~ 263 (297)
+...|-.
T Consensus 176 ~~~~~L~ 182 (319)
T PRK08769 176 EALAWLL 182 (319)
T ss_pred HHHHHHH
Confidence 7655543
No 210
>PRK10867 signal recognition particle protein; Provisional
Probab=95.44 E-value=0.5 Score=44.97 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=17.0
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+-++|.+|+||||++..+..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4556889999999997755554
No 211
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.44 E-value=0.047 Score=49.34 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=32.4
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTL 240 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~ 240 (297)
++.=+++||.--+. |...-+.+...+... ..+..||+||+..+....+|.
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~----------~~~~tiii~sH~l~~~~~~~d 200 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNI----------GKDKTIILSTHIMQEVEAICD 200 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHh----------cCCCEEEEEcCCHHHHHHhCC
Confidence 88889999988764 222333454555442 235779999997766666654
No 212
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.41 E-value=0.034 Score=52.74 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=18.3
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
+|+|..|+|||||++.+.+.
T Consensus 162 ~I~G~sG~GKTtLL~~I~~~ 181 (442)
T PRK08927 162 GIFAGSGVGKSVLLSMLARN 181 (442)
T ss_pred EEECCCCCCHHHHHHHHHhc
Confidence 68899999999999999974
No 213
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.41 E-value=0.027 Score=53.36 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=41.3
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHh----------------------------
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEG---------------------------- 176 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~---------------------------- 176 (297)
+|+|..|+|||||++.+.+.. ..+..+.+-+.... .+.++..+++..
T Consensus 166 gI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~ 241 (444)
T PRK08972 166 GLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETAT 241 (444)
T ss_pred EEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHH
Confidence 688999999999999998732 12344444444433 234444444333
Q ss_pred -----hcCCCceEEEEEeCCCC
Q 043781 177 -----LEGSEKKFFLILDDVWT 193 (297)
Q Consensus 177 -----~~~~~kr~LiVlDdv~~ 193 (297)
+...++..|+++||+-.
T Consensus 242 tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 242 TIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHcCCCEEEEEcChHH
Confidence 22229999999999954
No 214
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.40 E-value=0.057 Score=45.79 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+..-
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 29 YGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999874
No 215
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.40 E-value=0.053 Score=49.04 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=31.9
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTL 240 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~ 240 (297)
.+.=+|+||.--+. |...-..+...+... ...|..||++|++.+....+|.
T Consensus 141 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---------~~~g~tvi~~sH~~~~~~~~~d 192 (302)
T TIGR01188 141 HQPDVLFLDEPTTGLDPRTRRAIWDYIRAL---------KEEGVTILLTTHYMEEADKLCD 192 (302)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---------HhCCCEEEEECCCHHHHHHhCC
Confidence 88889999988664 222222344444332 1347789999998766666554
No 216
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.39 E-value=0.16 Score=44.54 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.6
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||++.+...
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3579999999999999999884
No 217
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.39 E-value=0.042 Score=56.85 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=43.3
Q ss_pred cccccCCcchHHHHHHHhcccccccC------CCceEEE-EeCC-------CCCHHHHHHHHHHhhcCCCceEEEEEeCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIEN------FDKRIWV-CVSD-------PFDEFRIAKAIIEGLEGSEKKFFLILDDV 191 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~------F~~~~wv-~vs~-------~~~~~~~~~~i~~~~~~~~kr~LiVlDdv 191 (297)
-++|.+|+|||+||+.+... +... ....+|. .++. .-...+-++.++..+...+++.+|++|++
T Consensus 198 lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEi 275 (852)
T TIGR03346 198 VLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDEL 275 (852)
T ss_pred EEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccH
Confidence 37899999999999998874 3221 1344443 2111 11344456677776654457899999999
Q ss_pred CCC
Q 043781 192 WTD 194 (297)
Q Consensus 192 ~~~ 194 (297)
..-
T Consensus 276 h~l 278 (852)
T TIGR03346 276 HTL 278 (852)
T ss_pred HHh
Confidence 753
No 218
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.36 E-value=2.5 Score=39.88 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcc-cccHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHh
Q 043781 22 IQAVLNDAEQRQ-VKEASVRLWLDQLKEASYDME---DVLDEWITARLKLQIEGVDENALVRKKPKIIEINENLDDIAKQ 97 (297)
Q Consensus 22 i~a~l~~ae~~~-~~~~~v~~Wl~~lr~~ayd~e---D~ld~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~ 97 (297)
++..+....... .....++.-++++|-+.-+++ .++-+|.....+................-|+-+.++|-++...
T Consensus 9 l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~llG~ 88 (451)
T COG0541 9 LSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLLGG 88 (451)
T ss_pred HHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 334444444433 344668888888888776654 2333333333222221111111111111234444444444311
Q ss_pred hhhcccccccCCcccccccccccccccccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHH--HHHHHHHH
Q 043781 98 KEVFNFNVIRGSTEKSERIHSTALINVSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF--RIAKAIIE 175 (297)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~ 175 (297)
+............++-.+|.-|.||||-+-++.+. .++ ....+-+...+.+.+. +=++.+.+
T Consensus 89 -------------~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~ 152 (451)
T COG0541 89 -------------ENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAE 152 (451)
T ss_pred -------------CCcccccCCCCCeEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHH
Confidence 00001111112334557899999999999777763 333 4444444444444332 23445555
Q ss_pred hhcCC
Q 043781 176 GLEGS 180 (297)
Q Consensus 176 ~~~~~ 180 (297)
+.+.+
T Consensus 153 q~~v~ 157 (451)
T COG0541 153 QVGVP 157 (451)
T ss_pred HcCCc
Confidence 55443
No 219
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.35 E-value=0.029 Score=49.82 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=43.7
Q ss_pred ccccccCCcchHHHH-HHHhcccccccCCCce-EEEEeCCCC-CHHHHHHHHHHhhc-----------------------
Q 043781 125 SDVRGMGGIGKTTLA-QFAYNDKDVIENFDKR-IWVCVSDPF-DEFRIAKAIIEGLE----------------------- 178 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~~~----------------------- 178 (297)
..|+|..|+|||+|| ..+.+. . .-+.+ +++-+.... .+.++.+++.+.-.
T Consensus 72 ~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~ 147 (274)
T cd01132 72 ELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPY 147 (274)
T ss_pred EEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHH
Confidence 468999999999995 666552 1 22333 444444433 34555555543321
Q ss_pred ----------CCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 179 ----------GSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 179 ----------~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
..++..||++||+-... ..|..+..
T Consensus 148 ~a~aiAE~fr~~G~~Vlvl~DslTr~A-~A~rEisl 182 (274)
T cd01132 148 TGCAMGEYFMDNGKHALIIYDDLSKQA-VAYRQMSL 182 (274)
T ss_pred HHHHHHHHHHHCCCCEEEEEcChHHHH-HHHHHHHH
Confidence 11889999999985432 24444433
No 220
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.34 E-value=0.078 Score=47.19 Aligned_cols=21 Identities=24% Similarity=0.006 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+...
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~ 134 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARI 134 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCc
Confidence 468899999999999999984
No 221
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.33 E-value=0.033 Score=53.06 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=41.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHH-----------------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAII----------------------------- 174 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~----------------------------- 174 (297)
.+|+|..|+|||||+.++..+..... =+.++++-+.... .+.+++.+++
T Consensus 147 ~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a 225 (463)
T PRK09280 147 IGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTG 225 (463)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 36899999999999988765432211 1344444443332 2344444443
Q ss_pred ----HhhcC-CCceEEEEEeCCCC
Q 043781 175 ----EGLEG-SEKKFFLILDDVWT 193 (297)
Q Consensus 175 ----~~~~~-~~kr~LiVlDdv~~ 193 (297)
+.+.. .++..||++|++-.
T Consensus 226 ~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 226 LTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHhcCCceEEEecchHH
Confidence 33332 28999999999953
No 222
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.31 E-value=0.18 Score=42.70 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=56.0
Q ss_pred cccccccCCcchHHHHHHHhccccc--cc--------CCC-ceE--EEEeCCCCC------HH--HHHHHHHHhhcCCCc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDV--IE--------NFD-KRI--WVCVSDPFD------EF--RIAKAIIEGLEGSEK 182 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~--~~--------~F~-~~~--wv~vs~~~~------~~--~~~~~i~~~~~~~~k 182 (297)
...|.|+.|.|||||.+.+.....+ .. .|. ..+ +.++.++.. .. .-+..+++.++. .+
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~-~~ 105 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKK-GE 105 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccC-CC
Confidence 4568899999999999888753211 00 011 112 222222210 01 224555665542 37
Q ss_pred eEEEEEeCCCCCC-ccCHHHHH-HHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHH
Q 043781 183 KFFLILDDVWTDD-YSKWEPFH-NCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHL 238 (297)
Q Consensus 183 r~LiVlDdv~~~~-~~~w~~l~-~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v 238 (297)
+-|+++|..-..- ......+. ..+... ...|..+|++|++.+.+..+
T Consensus 106 p~llllDEp~~glD~~~~~~l~~~ll~~l---------~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 106 PVLFLLDEIFKGTNSRERQAASAAVLKFL---------KNKNTIGIISTHDLELADLL 154 (199)
T ss_pred CeEEEEecccCCCCHHHHHHHHHHHHHHH---------HHCCCEEEEEcCcHHHHHhh
Confidence 8999999975431 11222232 223221 13477899999977655443
No 223
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.23 Score=43.74 Aligned_cols=22 Identities=36% Similarity=0.324 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||++.+..-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999874
No 224
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.29 E-value=0.049 Score=52.43 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=45.6
Q ss_pred cccccCCcchHHHH-HHHhcccccc-----cCCCceEEEEeCCCCCHHHHHHHHHHhhc-CC------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDVI-----ENFDKRIWVCVSDPFDEFRIAKAIIEGLE-GS------------------ 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~i~~~~~-~~------------------ 180 (297)
.|+|-.|+|||+|| ..+.+...+. ++-+.++++.+.+..+-..-+.+.++.-+ ..
T Consensus 193 lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~ 272 (574)
T PTZ00185 193 LIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYL 272 (574)
T ss_pred EeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHH
Confidence 68899999999997 6666643221 23456778888776543322333333333 11
Q ss_pred ---------------CceEEEEEeCCCCC
Q 043781 181 ---------------EKKFFLILDDVWTD 194 (297)
Q Consensus 181 ---------------~kr~LiVlDdv~~~ 194 (297)
++..|||+||+-..
T Consensus 273 Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 273 APYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 99999999999654
No 225
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.012 Score=47.92 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.||+|+|||||++.+.+.
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHH
Confidence 468899999999999999873
No 226
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.27 E-value=0.11 Score=43.96 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||.+.+..-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999884
No 227
>PRK08149 ATP synthase SpaL; Validated
Probab=95.26 E-value=0.044 Score=51.87 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||+..+.+.
T Consensus 154 i~I~G~sG~GKTTLl~~i~~~ 174 (428)
T PRK08149 154 MGIFASAGCGKTSLMNMLIEH 174 (428)
T ss_pred EEEECCCCCChhHHHHHHhcC
Confidence 368899999999999999874
No 228
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.24 E-value=0.15 Score=42.40 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=31.3
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLT 239 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~ 239 (297)
.+.-+++||+--.. |....+.+...+... ...|..||++|++.+....++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~---------~~~~~tiii~sh~~~~~~~~~ 171 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIREL---------ADAGKAVLLISSELDELLGLC 171 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHH---------HHCCCEEEEEeCCHHHHHHhC
Confidence 67789999988664 323444555555443 134678999998755444443
No 229
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.24 E-value=0.031 Score=52.80 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||++.+...
T Consensus 143 i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 143 LGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred EEEECCCCCChHHHHHHHhCC
Confidence 468899999999999999874
No 230
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.23 E-value=0.037 Score=56.35 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=37.9
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeC----CCC-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPF-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
-++|++|+|||+||+.+.+. ....| +.+..+ ... .....++.++..... ....+|+||++..
T Consensus 216 LL~GppGtGKT~laraia~~--~~~~~---i~i~~~~i~~~~~g~~~~~l~~lf~~a~~-~~p~il~iDEid~ 282 (733)
T TIGR01243 216 LLYGPPGTGKTLLAKAVANE--AGAYF---ISINGPEIMSKYYGESEERLREIFKEAEE-NAPSIIFIDEIDA 282 (733)
T ss_pred EEECCCCCChHHHHHHHHHH--hCCeE---EEEecHHHhcccccHHHHHHHHHHHHHHh-cCCcEEEeehhhh
Confidence 47899999999999999983 33332 222211 111 123344555554433 4567999999864
No 231
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.23 E-value=0.37 Score=45.68 Aligned_cols=22 Identities=36% Similarity=0.299 Sum_probs=19.0
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.++|.+|+||||++..+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999988876
No 232
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.22 E-value=0.032 Score=49.63 Aligned_cols=76 Identities=20% Similarity=0.182 Sum_probs=50.9
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceE-EEEeCCCCCHHH---HHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRI-WVCVSDPFDEFR---IAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPF 202 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~---~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l 202 (297)
++|+||+||++|++.+..- . +..+ -+.+++.++..+ -++.++...+..+++..+++.|-+-.+...++.+
T Consensus 36 LvG~~GsGr~sl~rLaa~i---~---~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~i 109 (268)
T PF12780_consen 36 LVGVGGSGRQSLARLAAFI---C---GYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDI 109 (268)
T ss_dssp EECTTTSCHHHHHHHHHHH---T---TEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHH
T ss_pred EecCCCccHHHHHHHHHHH---h---ccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHH
Confidence 7899999999999987762 1 1111 123566666655 4666677777778999999999876654566777
Q ss_pred HHHHhh
Q 043781 203 HNCLMR 208 (297)
Q Consensus 203 ~~~l~~ 208 (297)
...+..
T Consensus 110 n~LL~s 115 (268)
T PF12780_consen 110 NSLLSS 115 (268)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 666643
No 233
>PRK05922 type III secretion system ATPase; Validated
Probab=95.20 E-value=0.052 Score=51.41 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.+.+.
T Consensus 160 igI~G~nG~GKSTLL~~Ia~~ 180 (434)
T PRK05922 160 IGVFSEPGSGKSSLLSTIAKG 180 (434)
T ss_pred EEEECCCCCChHHHHHHHhcc
Confidence 368899999999999999864
No 234
>PRK03839 putative kinase; Provisional
Probab=95.19 E-value=0.01 Score=49.20 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-|+|++|+||||+++.+++.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999984
No 235
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.13 E-value=0.043 Score=50.56 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=35.7
Q ss_pred cccccccCCcchHHHHHHHhccccccc----CCCceEEEEeCCCCCHHHHHHHHHHhhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLE 178 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~~~ 178 (297)
...|+|.+|+|||+|+..++-...... .-...+|+.....|+..++. +|+++++
T Consensus 125 i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 125 ITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred EEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 346889999999999987775322211 11268899888887776653 4444443
No 236
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.18 Score=41.46 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|.|||||.+.+..-
T Consensus 31 ~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 31 VAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 468899999999999999884
No 237
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.11 E-value=0.012 Score=46.47 Aligned_cols=19 Identities=37% Similarity=0.336 Sum_probs=17.0
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
-++|++|+||||+|+.+..
T Consensus 3 i~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 3 ILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3679999999999999885
No 238
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.11 E-value=0.042 Score=52.21 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=18.1
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
.|+|..|+|||||++.+...
T Consensus 167 ~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 167 GIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 68899999999999999874
No 239
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.10 E-value=0.046 Score=47.24 Aligned_cols=81 Identities=15% Similarity=0.054 Sum_probs=49.4
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHH--HHh--hcCC-CceEEEEEeCCCCCCccCHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI--IEG--LEGS-EKKFFLILDDVWTDDYSKWEP 201 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--~~~--~~~~-~kr~LiVlDdv~~~~~~~w~~ 201 (297)
|-||+|+||||-+..+.+.---...=+...=++.|+...+.-+-..| +.| +..+ ++--+||||...+.....-+.
T Consensus 53 isGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQA 132 (333)
T KOG0991|consen 53 ISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQA 132 (333)
T ss_pred eeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHH
Confidence 56999999999887777731111122455556667665544433333 222 2222 777889999998875445556
Q ss_pred HHHHHh
Q 043781 202 FHNCLM 207 (297)
Q Consensus 202 l~~~l~ 207 (297)
++..+.
T Consensus 133 lRRtME 138 (333)
T KOG0991|consen 133 LRRTME 138 (333)
T ss_pred HHHHHH
Confidence 666654
No 240
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.09 E-value=0.054 Score=55.81 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=41.7
Q ss_pred cccccCCcchHHHHHHHhcccc---cccC-CCceEEE-EeC------C-CCCHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKD---VIEN-FDKRIWV-CVS------D-PFDEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~---~~~~-F~~~~wv-~vs------~-~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
-++|.+|+|||+||+.+...-. +... -+..+|. .++ . .-...+-++.+++.+.. .++.+|++|++..
T Consensus 204 lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~-~~~~ILfiDEih~ 282 (821)
T CHL00095 204 ILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE-NNNIILVIDEVHT 282 (821)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh-cCCeEEEEecHHH
Confidence 4889999999999999888421 1111 1344554 211 1 11244556677766643 4689999999963
No 241
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.07 E-value=0.029 Score=47.66 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=29.7
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFR 168 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 168 (297)
...|+|.+|+|||+|+.++..+ ....-...+|+.... ++..+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~r 55 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPER 55 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHH
Confidence 3468999999999999887763 323345778887764 44443
No 242
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.07 E-value=0.15 Score=45.05 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||.+.+..-
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999874
No 243
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.05 E-value=0.016 Score=47.92 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=24.8
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEE
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWV 158 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv 158 (297)
.+.+.|++|+||||+|+.+++ +...++...+++
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 345789999999999999998 454455555555
No 244
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.11 Score=44.16 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999974
No 245
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.02 E-value=0.16 Score=43.37 Aligned_cols=21 Identities=38% Similarity=0.332 Sum_probs=19.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|.|||||.+.+...
T Consensus 40 ~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 40 LLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 468899999999999999975
No 246
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.1 Score=48.34 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=74.6
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-------CHHHHHHHHHHhhcCCCceEEEEEeCCCCC-----
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-------DEFRIAKAIIEGLEGSEKKFFLILDDVWTD----- 194 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~----- 194 (297)
++|++|.|||.||+.|+. +... -|++||... .-+++++-+++-... .-...|.+|.+...
T Consensus 250 m~GPPGTGKTlLAKAvAT--Ec~t-----TFFNVSsstltSKwRGeSEKlvRlLFemARf-yAPStIFiDEIDslcs~RG 321 (491)
T KOG0738|consen 250 MVGPPGTGKTLLAKAVAT--ECGT-----TFFNVSSSTLTSKWRGESEKLVRLLFEMARF-YAPSTIFIDEIDSLCSQRG 321 (491)
T ss_pred eeCCCCCcHHHHHHHHHH--hhcC-----eEEEechhhhhhhhccchHHHHHHHHHHHHH-hCCceeehhhHHHHHhcCC
Confidence 459999999999999998 3332 234444321 223444433332221 34667888888641
Q ss_pred ---CccCHHHHHHHHhhhhhhhceeeecCCCCeEEE---EeccH-HHHHHHHHhhCCCccccCCccchhhhhhhhhccCC
Q 043781 195 ---DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSL---TSTCQ-EKLRHLTLTLGLRAKFPVSIFDAKKIWGWEVFGRN 267 (297)
Q Consensus 195 ---~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iii---TTr~~-~~~~~v~~~~~~~~~~~l~~l~~~~lf~~~~f~~~ 267 (297)
+.+.-..++.-|- .+-+-+..+..++++|. .|..+ +..+.+-..+--.-.+||-..+..+-+-....+..
T Consensus 322 ~s~EHEaSRRvKsELL---vQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~ 398 (491)
T KOG0738|consen 322 GSSEHEASRRVKSELL---VQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSV 398 (491)
T ss_pred CccchhHHHHHHHHHH---HHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc
Confidence 1112222333331 11111122244555433 34322 44444444444333456666655543333333433
Q ss_pred CCCCchhhHhhhhhhccccccccchhh
Q 043781 268 TSTRPGMVSRYLMAEFCEPVCSVKAWC 294 (297)
Q Consensus 268 ~~~~~~~~~~~~~~~~c~~~c~~~~~~ 294 (297)
...+|-.+..+......+++--|-..|
T Consensus 399 ~~~~~~~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 399 ELDDPVNLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred cCCCCccHHHHHHHhcCCChHHHHHHH
Confidence 333343444444333456665555555
No 247
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.00 E-value=0.072 Score=48.32 Aligned_cols=51 Identities=20% Similarity=0.136 Sum_probs=32.0
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTL 240 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~ 240 (297)
.+.=+++||.--+. |...-..+...+... ...|..||+||+..+.+..+|.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l---------~~~g~till~sH~l~e~~~~~d 206 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSL---------LARGKTILLTTHFMEEAERLCD 206 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---------HhCCCEEEEECCCHHHHHHhCC
Confidence 88889999988664 222222333334332 1457889999998776666654
No 248
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.00 E-value=0.099 Score=44.52 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=17.6
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|.|+.|.||||+.+.+..
T Consensus 31 ~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999988863
No 249
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.00 E-value=0.26 Score=42.46 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|.|..|+|||||++.+...
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999984
No 250
>PRK05973 replicative DNA helicase; Provisional
Probab=94.99 E-value=0.2 Score=43.63 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=16.4
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-|.|.+|+|||+++.++...
T Consensus 68 LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 68 LLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 46799999999999876553
No 251
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.98 E-value=0.079 Score=45.24 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=19.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|.|||||.+.+..-
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999974
No 252
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.98 E-value=0.23 Score=43.79 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|.|||||.+.+..-
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3579999999999999999884
No 253
>PRK00625 shikimate kinase; Provisional
Probab=94.98 E-value=0.013 Score=48.57 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-++||+|+||||+++.+.+.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999874
No 254
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.98 E-value=0.24 Score=42.37 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|.|||||.+.+..-
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999974
No 255
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.97 E-value=0.065 Score=42.32 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.1
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|+|.+|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 568999999999999999886
No 256
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.97 E-value=0.099 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..++.|+.|.|||||.+.+..-
T Consensus 33 i~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3478899999999999999984
No 257
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.021 Score=49.86 Aligned_cols=59 Identities=22% Similarity=0.355 Sum_probs=35.7
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC-C------CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-F------DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~------~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
+||++|+|||.||+.|.++ ....| +.|... | .-.++.+++++-... +-.-+|.+|.+..
T Consensus 194 lygppg~gktml~kava~~--t~a~f-----irvvgsefvqkylgegprmvrdvfrlake-napsiifideida 259 (408)
T KOG0727|consen 194 LYGPPGTGKTMLAKAVANH--TTAAF-----IRVVGSEFVQKYLGEGPRMVRDVFRLAKE-NAPSIIFIDEIDA 259 (408)
T ss_pred EeCCCCCcHHHHHHHHhhc--cchhe-----eeeccHHHHHHHhccCcHHHHHHHHHHhc-cCCcEEEeehhhh
Confidence 6799999999999999995 33344 222111 0 012233333332222 6678889998864
No 258
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.95 E-value=0.14 Score=42.13 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|.|||||.+.+..-
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999974
No 259
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.94 E-value=0.057 Score=51.22 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=41.9
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHh----------------------------
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEG---------------------------- 176 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~---------------------------- 176 (297)
+|+|..|+|||||.+.+++... -+..+++-+.... .+.++....+..
T Consensus 166 ~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~ 241 (439)
T PRK06936 166 GIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVAT 241 (439)
T ss_pred EEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHH
Confidence 6889999999999999998532 2455555554433 334444333322
Q ss_pred -----hcCCCceEEEEEeCCCC
Q 043781 177 -----LEGSEKKFFLILDDVWT 193 (297)
Q Consensus 177 -----~~~~~kr~LiVlDdv~~ 193 (297)
+...++..|+++|++-.
T Consensus 242 tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 242 SIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHcCCCEEEeccchhH
Confidence 21119999999999953
No 260
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.94 E-value=0.35 Score=41.44 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=31.7
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLT 239 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~ 239 (297)
...-+++||+--.. |....+.+...+... ...|..||++|++.+....+|
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~---------~~~~~tiii~sH~~~~~~~~~ 191 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSF---------PEQGITVILSSHILSEVQQLA 191 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHH---------HHCCCEEEEEcCCHHHHHHhc
Confidence 77889999988665 323344455555442 134667999999766554444
No 261
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.91 E-value=0.055 Score=51.41 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=46.5
Q ss_pred ccccccCCcchHHHHHHHhccccccc--CCC---------ceEEEEeCCCCCHHHHHHHHHHhhc-CC------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIE--NFD---------KRIWVCVSDPFDEFRIAKAIIEGLE-GS------------ 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~i~~~~~-~~------------ 180 (297)
.+|+|-.|+|||||+.++.++....+ ..| .++++-+.......+.+.+.+..-+ ..
T Consensus 144 igIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p 223 (466)
T TIGR01040 144 IPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDP 223 (466)
T ss_pred eeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCC
Confidence 47889999999999999887643100 011 4556666666555555555555443 11
Q ss_pred ----------------------CceEEEEEeCCCC
Q 043781 181 ----------------------EKKFFLILDDVWT 193 (297)
Q Consensus 181 ----------------------~kr~LiVlDdv~~ 193 (297)
++..|+++||+-.
T Consensus 224 ~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 224 TIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 8999999999954
No 262
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.89 E-value=0.058 Score=51.35 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||++.+...
T Consensus 171 igI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 171 LGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 368899999999999999873
No 263
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.86 E-value=0.076 Score=54.01 Aligned_cols=67 Identities=24% Similarity=0.229 Sum_probs=40.6
Q ss_pred cccccCCcchHHHHHHHhccccccc-C---CCceEEEE-eC-----C--CCCHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIE-N---FDKRIWVC-VS-----D--PFDEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~-~---F~~~~wv~-vs-----~--~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
=++|.+|+|||+||+.+...-.-.. . .++.+|.. .+ . .-....-++.++..+.. .+..+|+||++..
T Consensus 211 LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~-~~~~ILfIDEIh~ 289 (758)
T PRK11034 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSILFIDEIHT 289 (758)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHh-cCCCEEEeccHHH
Confidence 3789999999999999987311111 1 24555542 11 0 11234445566655543 3567999999974
No 264
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.86 E-value=0.063 Score=48.94 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=29.9
Q ss_pred ccccccccCCcchHHHHHHHhccccccc----CCCceEEEEeCCCCCHHH
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFR 168 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~ 168 (297)
....|+|.+|+|||||+..+........ .-...+|+.....++..+
T Consensus 97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R 146 (316)
T TIGR02239 97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER 146 (316)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH
Confidence 3456899999999999988765322211 112457887766666554
No 265
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.83 E-value=0.23 Score=44.25 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=32.7
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTL 240 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~ 240 (297)
.+.=+++||+--.. |......+...+... ...|..||++|++.+....+|.
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~---------~~~g~tili~tH~~~~~~~~~d 206 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRL---------HNQGKTVIVATHDVDLAAEWAD 206 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHH---------HHCCCEEEEEeCCHHHHHHhCC
Confidence 88889999998765 223344455555443 1336788999987665555543
No 266
>PRK04296 thymidine kinase; Provisional
Probab=94.83 E-value=0.029 Score=47.17 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=16.1
Q ss_pred ccccCCcchHHHHHHHhcc
Q 043781 127 VRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~ 145 (297)
++|..|.||||++..+...
T Consensus 7 itG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 7 IYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EECCCCCHHHHHHHHHHHH
Confidence 6799999999999777664
No 267
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.061 Score=50.57 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=40.4
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
++|+||.|||++..++++. . .|+. .=+..+...+-.+ ++.++... ..+-+|||.|+.-
T Consensus 240 LYGPPGTGKSS~IaAmAn~--L--~ydI-ydLeLt~v~~n~d-Lr~LL~~t---~~kSIivIEDIDc 297 (457)
T KOG0743|consen 240 LYGPPGTGKSSFIAAMANY--L--NYDI-YDLELTEVKLDSD-LRHLLLAT---PNKSILLIEDIDC 297 (457)
T ss_pred eeCCCCCCHHHHHHHHHhh--c--CCce-EEeeeccccCcHH-HHHHHHhC---CCCcEEEEeeccc
Confidence 6799999999999999983 2 1332 1234444444444 77777776 4688999999974
No 268
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.81 E-value=0.12 Score=44.24 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=17.9
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..-|.|+.|.|||||.+.+..
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 346889999999999998874
No 269
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.80 E-value=0.036 Score=50.48 Aligned_cols=66 Identities=24% Similarity=0.209 Sum_probs=38.9
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEe---------------------CCCCCHHHHHHHHHHhhcCCCce
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV---------------------SDPFDEFRIAKAIIEGLEGSEKK 183 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v---------------------s~~~~~~~~~~~i~~~~~~~~kr 183 (297)
..|+|.+|+||||||.++... ....=...+|+.. +++....+.+ .++.++-..+.-
T Consensus 58 teI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l-~~~~~li~~~~~ 134 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQAL-EIAETLVRSGAV 134 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHH-HHHHHHhhccCC
Confidence 458999999999999876653 2222233444432 3333444433 333333333566
Q ss_pred EEEEEeCCCC
Q 043781 184 FFLILDDVWT 193 (297)
Q Consensus 184 ~LiVlDdv~~ 193 (297)
-+||+|-|-.
T Consensus 135 ~lIVIDSv~a 144 (321)
T TIGR02012 135 DIIVVDSVAA 144 (321)
T ss_pred cEEEEcchhh
Confidence 7999999864
No 270
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.80 E-value=0.1 Score=43.80 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.4
Q ss_pred cccccCCcchHHHHHHHhcccc
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKD 147 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~ 147 (297)
-++|+.|.|||||.+.+|..++
T Consensus 32 fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 32 FLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred EEECCCCCCHHHHHHHHHhhhc
Confidence 4789999999999999999644
No 271
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.80 E-value=0.25 Score=43.36 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|.|||||++.++.-
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999974
No 272
>PRK14974 cell division protein FtsY; Provisional
Probab=94.79 E-value=2.7 Score=38.63 Aligned_cols=22 Identities=32% Similarity=0.208 Sum_probs=18.1
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.++|++|+||||++..+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999997777765
No 273
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.78 E-value=0.23 Score=40.89 Aligned_cols=98 Identities=15% Similarity=0.076 Sum_probs=51.7
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC--------------CceEEEEEeCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS--------------EKKFFLILDDV 191 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~--------------~kr~LiVlDdv 191 (297)
-|+|-.|+||+.+|+.+++. ....-..-+-|+.+ ..+...+-.+++-...+. ...=-|+||+|
T Consensus 26 lI~GE~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~-~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I 102 (168)
T PF00158_consen 26 LITGETGTGKELLARAIHNN--SPRKNGPFISVNCA-ALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEI 102 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHC--STTTTS-EEEEETT-TS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETG
T ss_pred EEEcCCCCcHHHHHHHHHHh--hhcccCCeEEEehh-hhhcchhhhhhhccccccccccccccCCceeeccceEEeecch
Confidence 48899999999999999994 22111222334333 233343444444322110 23346889999
Q ss_pred CCCCccCHHHHHHHHhhhhhhhceeeec-----CCCCeEEEEec
Q 043781 192 WTDDYSKWEPFHNCLMRVLQEFAAIEVD-----GDENPLSLTST 230 (297)
Q Consensus 192 ~~~~~~~w~~l~~~l~~~~~~~~~~~~~-----~~gs~iiiTTr 230 (297)
.+.....-..|...+... ...+.+ .-..|||.||.
T Consensus 103 ~~L~~~~Q~~Ll~~l~~~----~~~~~g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 103 EDLPPELQAKLLRVLEEG----KFTRLGSDKPVPVDVRIIASTS 142 (168)
T ss_dssp GGS-HHHHHHHHHHHHHS----EEECCTSSSEEE--EEEEEEES
T ss_pred hhhHHHHHHHHHHHHhhc----hhccccccccccccceEEeecC
Confidence 887544444455555432 111111 12457888886
No 274
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.77 E-value=0.051 Score=51.90 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=43.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCC--ceEEEEeCCCC-CHHHHHHHHHHh-------------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFD--KRIWVCVSDPF-DEFRIAKAIIEG------------------------- 176 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~i~~~------------------------- 176 (297)
.+|+|-.|+|||||+.++.+.......+. .++++-+.+.- .+.+++.+++..
T Consensus 144 ~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~ 223 (458)
T TIGR01041 144 LPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPR 223 (458)
T ss_pred EEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 36889999999999999988644321111 44455444432 344555544433
Q ss_pred --------hc-CCCceEEEEEeCCCC
Q 043781 177 --------LE-GSEKKFFLILDDVWT 193 (297)
Q Consensus 177 --------~~-~~~kr~LiVlDdv~~ 193 (297)
+. ..+++.|+++||+-.
T Consensus 224 ~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 224 MALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHccCCcEEEEEcChhH
Confidence 22 128999999999954
No 275
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.77 E-value=0.016 Score=48.89 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
++|.|.+|+||||||+.+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57889999999999999988
No 276
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.05 Score=52.17 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=41.4
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHH-----HHHHHHHhhcCCCceEEEEEeCCCCCCccCHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFR-----IAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEP 201 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~-----~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~ 201 (297)
+.|++|+|||+||-.+... +.|..+--++...-..+.+ ..+.+++.... ..--.||+||+-.- -+|-.
T Consensus 543 l~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYk-S~lsiivvDdiErL--iD~vp 615 (744)
T KOG0741|consen 543 LEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYK-SPLSIIVVDDIERL--LDYVP 615 (744)
T ss_pred EecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhc-CcceEEEEcchhhh--hcccc
Confidence 4499999999999998873 4565443332211111111 12222222222 46678999999665 35555
Q ss_pred HHHHHh
Q 043781 202 FHNCLM 207 (297)
Q Consensus 202 l~~~l~ 207 (297)
|.+.|+
T Consensus 616 IGPRfS 621 (744)
T KOG0741|consen 616 IGPRFS 621 (744)
T ss_pred cCchhh
Confidence 554444
No 277
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.38 Score=47.94 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=41.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHH-----------HHHHhhcCC-CceEEEEEeCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK-----------AIIEGLEGS-EKKFFLILDDVW 192 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~-----------~i~~~~~~~-~kr~LiVlDdv~ 192 (297)
.-.+|++|+|||.+|+.|+. ...+.| +-++|..-.|+.+|-. .|...+..- -..=|+.||.|.
T Consensus 441 lCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvD 515 (906)
T KOG2004|consen 441 LCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVD 515 (906)
T ss_pred EEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhh
Confidence 45789999999999999998 566666 2334455445544322 333333221 355688899997
Q ss_pred CC
Q 043781 193 TD 194 (297)
Q Consensus 193 ~~ 194 (297)
..
T Consensus 516 Kl 517 (906)
T KOG2004|consen 516 KL 517 (906)
T ss_pred hh
Confidence 53
No 278
>PRK08233 hypothetical protein; Provisional
Probab=94.74 E-value=0.016 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|.|.+|+||||||+.+...
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3567899999999999999874
No 279
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=94.74 E-value=0.084 Score=50.06 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+...
T Consensus 148 ~~I~G~sG~GKStLl~~I~~~ 168 (422)
T TIGR02546 148 IGIFAGAGVGKSTLLGMIARG 168 (422)
T ss_pred EEEECCCCCChHHHHHHHhCC
Confidence 468899999999999999874
No 280
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.71 E-value=0.17 Score=42.53 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|.|..|.|||||.+.+..-
T Consensus 38 ~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 38 TAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999884
No 281
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.70 E-value=0.11 Score=45.23 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|.|||||++.+...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999874
No 282
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.67 E-value=0.068 Score=50.87 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=43.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHhhcCC-----------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS----------------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~~~~~----------------------- 180 (297)
.+|+|..|+|||||+.++..+... ++=+.++++-+.... .+.+++.++...-...
T Consensus 146 ~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a 224 (461)
T TIGR01039 146 IGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTG 224 (461)
T ss_pred EEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 368899999999999887764222 222355566554433 3455555554332111
Q ss_pred -----------CceEEEEEeCCCC
Q 043781 181 -----------EKKFFLILDDVWT 193 (297)
Q Consensus 181 -----------~kr~LiVlDdv~~ 193 (297)
++..|+++||+-.
T Consensus 225 ~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 225 LTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHhcCCeeEEEecchhH
Confidence 7899999999954
No 283
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.66 E-value=0.27 Score=47.82 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|.|||||.+.+..-
T Consensus 52 ivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 52 IVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3578999999999999999984
No 284
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.66 E-value=0.067 Score=52.17 Aligned_cols=67 Identities=19% Similarity=0.126 Sum_probs=39.9
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEE-eCCCC-CHHHHH--------------------------HHHHHhh
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC-VSDPF-DEFRIA--------------------------KAIIEGL 177 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~-~~~~~~--------------------------~~i~~~~ 177 (297)
.|+|.+|+|||||++.|.+.. ..++-++.++|. |.... .+.++. -.+++.+
T Consensus 420 LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~f 498 (672)
T PRK12678 420 LIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRL 498 (672)
T ss_pred EEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999831 122334444432 22211 222222 2233333
Q ss_pred cCCCceEEEEEeCCCC
Q 043781 178 EGSEKKFFLILDDVWT 193 (297)
Q Consensus 178 ~~~~kr~LiVlDdv~~ 193 (297)
-..++.+||+||++-.
T Consensus 499 re~G~dVlillDSlTR 514 (672)
T PRK12678 499 VELGKDVVVLLDSITR 514 (672)
T ss_pred HHcCCCEEEEEeCchH
Confidence 3339999999999953
No 285
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.65 E-value=0.038 Score=50.43 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=39.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC---------------------CCCHHHHHHHHHHhhcCCCce
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD---------------------PFDEFRIAKAIIEGLEGSEKK 183 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~---------------------~~~~~~~~~~i~~~~~~~~kr 183 (297)
..|+|++|+||||||.++... ....-...+|+.... +.+..+.+ .++.++-..+.-
T Consensus 58 teI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l-~i~~~li~s~~~ 134 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQAL-EIADSLVRSGAV 134 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHH-HHHHHHHhccCC
Confidence 458999999999999887653 222233455554433 33333332 233333333567
Q ss_pred EEEEEeCCCC
Q 043781 184 FFLILDDVWT 193 (297)
Q Consensus 184 ~LiVlDdv~~ 193 (297)
-|||+|-|-.
T Consensus 135 ~lIVIDSvaa 144 (325)
T cd00983 135 DLIVVDSVAA 144 (325)
T ss_pred CEEEEcchHh
Confidence 7999999864
No 286
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.64 E-value=0.24 Score=45.49 Aligned_cols=121 Identities=12% Similarity=-0.016 Sum_probs=70.3
Q ss_pred ccccCCcchHHHHHHHhccccc--------------------ccCCCceEEEE-eC--CCCCHHHHHHHHHHhhcCC---
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV--------------------IENFDKRIWVC-VS--DPFDEFRIAKAIIEGLEGS--- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~--------------------~~~F~~~~wv~-vs--~~~~~~~~~~~i~~~~~~~--- 180 (297)
+.|+.|+||+++|..+..---- ..|-|.. ++. .. ....+.++- ++.+.+...
T Consensus 29 f~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~~~~I~idqiR-~l~~~~~~~~~~ 106 (334)
T PRK07993 29 IQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYY-TLTPEKGKSSLGVDAVR-EVTEKLYEHARL 106 (334)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecccccccCCHHHHH-HHHHHHhhcccc
Confidence 6799999999999776552110 1233332 332 21 224455443 344444322
Q ss_pred CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC-CccccCCccchhhhh
Q 043781 181 EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL-RAKFPVSIFDAKKIW 259 (297)
Q Consensus 181 ~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~-~~~~~l~~l~~~~lf 259 (297)
+++=++|+|++.....+.-+.|...|.. ...++-+|++|...+ .+..+.-. ...+++.+++.++..
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEE----------Pp~~t~fiL~t~~~~---~lLpTIrSRCq~~~~~~~~~~~~~ 173 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEE----------PPENTWFFLACREPA---RLLATLRSRCRLHYLAPPPEQYAL 173 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcC----------CCCCeEEEEEECChh---hChHHHHhccccccCCCCCHHHHH
Confidence 7788999999998876777788887854 255666666666432 23222111 145677777766644
Q ss_pred hhh
Q 043781 260 GWE 262 (297)
Q Consensus 260 ~~~ 262 (297)
.|-
T Consensus 174 ~~L 176 (334)
T PRK07993 174 TWL 176 (334)
T ss_pred HHH
Confidence 443
No 287
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.64 E-value=0.3 Score=39.75 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=53.8
Q ss_pred cccccccCCcchHHHHHHHhcccccc-----------cCCCceEEE----EeCCCCC-HHHHHHHHHHhhcCC--CceEE
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVI-----------ENFDKRIWV----CVSDPFD-EFRIAKAIIEGLEGS--EKKFF 185 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~-----------~~F~~~~wv----~vs~~~~-~~~~~~~i~~~~~~~--~kr~L 185 (297)
...|+|+.|.|||++.+.+.--.-.. ..+..-.|- ......+ -..-...+...+... +++-|
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~l 102 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRPL 102 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCCE
Confidence 45689999999999998863321111 112111111 1111111 122222333333321 36789
Q ss_pred EEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHH
Q 043781 186 LILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLR 236 (297)
Q Consensus 186 iVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~ 236 (297)
++||+.-.. +...-..+...+.+.. ..|+.+|++|+..+...
T Consensus 103 lllDEp~~gld~~~~~~l~~~l~~~~---------~~~~~vii~TH~~~~~~ 145 (162)
T cd03227 103 YILDEIDRGLDPRDGQALAEAILEHL---------VKGAQVIVITHLPELAE 145 (162)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHH---------hcCCEEEEEcCCHHHHH
Confidence 999999775 2122233444444432 23788999999765443
No 288
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.63 E-value=0.2 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.++|.|.=|+|||++.+.+.+.
T Consensus 22 ~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 22 VIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999998774
No 289
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.62 E-value=0.062 Score=50.95 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||++.+.+.
T Consensus 158 igI~G~sG~GKSTLL~~I~~~ 178 (433)
T PRK07594 158 VGIFSAPGVGKSTLLAMLCNA 178 (433)
T ss_pred EEEECCCCCCccHHHHHhcCC
Confidence 468899999999999999874
No 290
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.27 Score=41.15 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=17.9
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
.-|.|+.|+|||||.+.+.-
T Consensus 31 ~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 31 LQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred EEEECCCCCcHHHHHHHHHc
Confidence 34789999999999999987
No 291
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.61 E-value=0.018 Score=49.05 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.1
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..++|.|.+|+|||||++.++..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999884
No 292
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.58 E-value=1 Score=46.23 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-++|++|+|||+||+.+.+.
T Consensus 350 lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 350 LCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999983
No 293
>PRK09354 recA recombinase A; Provisional
Probab=94.57 E-value=0.048 Score=50.22 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=39.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeC---------------------CCCCHHHHHHHHHHhhcCCCce
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS---------------------DPFDEFRIAKAIIEGLEGSEKK 183 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs---------------------~~~~~~~~~~~i~~~~~~~~kr 183 (297)
..|+|++|+|||||+.++... ....=...+|+... ++.+.++.+ .++.++-..++-
T Consensus 63 teI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l-~i~~~li~s~~~ 139 (349)
T PRK09354 63 VEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQAL-EIADTLVRSGAV 139 (349)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHH-HHHHHHhhcCCC
Confidence 458999999999999877653 22222344555433 333333332 333343333567
Q ss_pred EEEEEeCCCC
Q 043781 184 FFLILDDVWT 193 (297)
Q Consensus 184 ~LiVlDdv~~ 193 (297)
-|||+|-|-.
T Consensus 140 ~lIVIDSvaa 149 (349)
T PRK09354 140 DLIVVDSVAA 149 (349)
T ss_pred CEEEEeChhh
Confidence 7999999864
No 294
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.55 E-value=0.15 Score=49.84 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||++.+..-
T Consensus 364 vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 364 VAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999763
No 295
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.54 E-value=0.052 Score=49.48 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=44.2
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhh--c--------CC-----CceEEEEEeC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGL--E--------GS-----EKKFFLILDD 190 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~--~--------~~-----~kr~LiVlDd 190 (297)
-+.|.+|+||||||+.+.. +....| +.|..+...+..+++..-.-.+ + ++ .+.+.++||.
T Consensus 68 lL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 68 MVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred EEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEech
Confidence 4679999999999999988 343332 2333333333333333210000 0 00 3557799999
Q ss_pred CCCCCccCHHHHHHHHh
Q 043781 191 VWTDDYSKWEPFHNCLM 207 (297)
Q Consensus 191 v~~~~~~~w~~l~~~l~ 207 (297)
+.....+....|...|.
T Consensus 143 in~a~p~~~~~L~~lLE 159 (327)
T TIGR01650 143 YDAGRPDVMFVIQRVLE 159 (327)
T ss_pred hhccCHHHHHHHHHHhc
Confidence 98765555555555554
No 296
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.51 E-value=0.019 Score=48.84 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.++|+|++|+|||||++.+...
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999874
No 297
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.51 E-value=0.095 Score=44.29 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|.|||||.+.+..-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999874
No 298
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.51 E-value=0.079 Score=50.02 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+.+.
T Consensus 140 ~~I~G~sG~GKTtLl~~I~~~ 160 (411)
T TIGR03496 140 MGIFAGSGVGKSTLLGMMARY 160 (411)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 468899999999999988874
No 299
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.50 E-value=0.23 Score=44.57 Aligned_cols=94 Identities=12% Similarity=-0.097 Sum_probs=59.4
Q ss_pred ccccCCcchHHHHHHHhcccc------------cccCCCceEEEEeCC--CCCHHHHHHHHHHhhcCC---CceEEEEEe
Q 043781 127 VRGMGGIGKTTLAQFAYNDKD------------VIENFDKRIWVCVSD--PFDEFRIAKAIIEGLEGS---EKKFFLILD 189 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~------------~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~~~~~---~kr~LiVlD 189 (297)
++|+.|+||+++|..+...-- -..|-|.....+... ...+.++ +++.+.+... +++=++|+|
T Consensus 24 f~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~ 102 (290)
T PRK05917 24 LHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETP-RAIKKQIWIHPYESPYKIYIIH 102 (290)
T ss_pred eECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHH-HHHHHHHhhCccCCCceEEEEe
Confidence 679999999999976655311 112444443333322 2455554 4555555433 677788999
Q ss_pred CCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 190 DVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 190 dv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
++.....+.+..|...+..- .+++.+|++|..
T Consensus 103 ~ad~mt~~AaNaLLK~LEEP----------p~~~~fiL~~~~ 134 (290)
T PRK05917 103 EADRMTLDAISAFLKVLEDP----------PQHGVIILTSAK 134 (290)
T ss_pred chhhcCHHHHHHHHHHhhcC----------CCCeEEEEEeCC
Confidence 99998777888888888652 455666666554
No 300
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.48 E-value=1.2 Score=42.29 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=17.4
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...-++|.+|+||||++..+..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3456889999999999766655
No 301
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.48 E-value=0.1 Score=47.84 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=50.0
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhc----CC----------CceEEEEEeCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE----GS----------EKKFFLILDDV 191 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~----~~----------~kr~LiVlDdv 191 (297)
-+.|.+|+|||+||+.+.. ..... .+++.........++.....-... .. .-+.++.+|.+
T Consensus 47 ll~G~PG~gKT~la~~lA~--~l~~~---~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI 121 (329)
T COG0714 47 LLEGPPGVGKTLLARALAR--ALGLP---FVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI 121 (329)
T ss_pred EEECCCCccHHHHHHHHHH--HhCCC---eEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc
Confidence 3679999999999999998 34333 355666666666666554332221 11 22259999999
Q ss_pred CCCCccCHHHHHHHHhh
Q 043781 192 WTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 192 ~~~~~~~w~~l~~~l~~ 208 (297)
+......-..|...+..
T Consensus 122 nra~p~~q~aLl~~l~e 138 (329)
T COG0714 122 NRAPPEVQNALLEALEE 138 (329)
T ss_pred ccCCHHHHHHHHHHHhC
Confidence 99865445555555543
No 302
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.47 E-value=0.032 Score=49.69 Aligned_cols=20 Identities=30% Similarity=0.121 Sum_probs=15.8
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-|.|.||+||||+|+.+...
T Consensus 5 il~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 5 ILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp EEE--TTSSHHHHHHHHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHH
Confidence 36799999999999999884
No 303
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.47 E-value=0.34 Score=47.17 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.+..-
T Consensus 40 ~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 40 HALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999874
No 304
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.44 E-value=0.089 Score=50.10 Aligned_cols=68 Identities=25% Similarity=0.285 Sum_probs=40.3
Q ss_pred cccccCCcchHHHHHHHhccccccc--------------CC-----------CceEEEEeCCCCCHHH-----HHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIE--------------NF-----------DKRIWVCVSDPFDEFR-----IAKAIIE 175 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~--------------~F-----------~~~~wv~vs~~~~~~~-----~~~~i~~ 175 (297)
.|+|..|+|||||++.+........ .| ..++++.-++.+-..+ ..-.|++
T Consensus 162 ~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAE 241 (438)
T PRK07721 162 GIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAE 241 (438)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6889999999999998886421100 01 1223333333322222 2223555
Q ss_pred hhcCCCceEEEEEeCCCC
Q 043781 176 GLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 176 ~~~~~~kr~LiVlDdv~~ 193 (297)
.+...++..||++||+-.
T Consensus 242 yfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 242 YFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHCCCcEEEEEeChHH
Confidence 554449999999999954
No 305
>PTZ00301 uridine kinase; Provisional
Probab=94.44 E-value=0.029 Score=48.06 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.3
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.++|-|.+|+||||||+.+.+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 457889999999999988865
No 306
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.42 E-value=0.15 Score=48.39 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+...
T Consensus 159 i~I~G~sG~GKTtLl~~Ia~~ 179 (432)
T PRK06793 159 IGIFAGSGVGKSTLLGMIAKN 179 (432)
T ss_pred EEEECCCCCChHHHHHHHhcc
Confidence 368899999999999999875
No 307
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.42 E-value=0.085 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+...
T Consensus 166 ~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 166 IGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 368899999999999998874
No 308
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.40 E-value=0.056 Score=48.23 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=35.5
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIA 170 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 170 (297)
...|+|+.|+||||||.+++-. .+..-...+|+.....+++.++.
T Consensus 62 ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~ 106 (279)
T COG0468 62 ITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK 106 (279)
T ss_pred EEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH
Confidence 3579999999999999887763 44455588999988888877643
No 309
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=94.38 E-value=0.16 Score=46.87 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=32.9
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTL 240 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~ 240 (297)
.+.=++++|.--.. |...-..+...+.+... ..|..||++|+..+....+|.
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~--------~~g~tiiliTH~~~~v~~~~d 209 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINR--------RLGLTILLITHEMDVVKRICD 209 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCC
Confidence 77789999988664 22222334445544311 336789999998777777664
No 310
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.024 Score=49.83 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=39.4
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC--CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF--DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
+||++|.|||.+|+.|.| +...-|-.++--...+.+ .-.++.+++++-... .|-++|.+|.+..
T Consensus 216 lygppgtgktl~aravan--rtdacfirvigselvqkyvgegarmvrelf~mart-kkaciiffdeida 281 (435)
T KOG0729|consen 216 LYGPPGTGKTLCARAVAN--RTDACFIRVIGSELVQKYVGEGARMVRELFEMART-KKACIIFFDEIDA 281 (435)
T ss_pred EeCCCCCchhHHHHHHhc--ccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc-cceEEEEeecccc
Confidence 679999999999999999 454444222100000111 123455555554433 7899999999864
No 311
>PRK06762 hypothetical protein; Provisional
Probab=94.37 E-value=0.023 Score=46.40 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+|+.+.+.
T Consensus 5 i~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999998874
No 312
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.056 Score=52.67 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=40.6
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCc-eEEEEeCCCCC-HHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDK-RIWVCVSDPFD-EFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
++|++|+|||.||+.+.+. ..=.|-. .+---||+... -++-+++++++... .-.+++++|++.-.
T Consensus 228 lHGPPGCGKT~lA~AiAge--l~vPf~~isApeivSGvSGESEkkiRelF~~A~~-~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 228 LHGPPGCGKTSLANAIAGE--LGVPFLSISAPEIVSGVSGESEKKIRELFDQAKS-NAPCIVFIDEIDAI 294 (802)
T ss_pred eeCCCCccHHHHHHHHhhh--cCCceEeecchhhhcccCcccHHHHHHHHHHHhc-cCCeEEEeeccccc
Confidence 6699999999999999994 4334411 11001222221 23445555555544 67999999999753
No 313
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.33 E-value=0.014 Score=45.69 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=30.6
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC--------CceEEEEEeCCCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS--------EKKFFLILDDVWTDD 195 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~--------~kr~LiVlDdv~~~~ 195 (297)
++|.+|+||||||+.+.. .+...|.. |..+......++...-+-..... --.-++.+|.+-...
T Consensus 4 leg~PG~GKT~la~~lA~--~~~~~f~R---Iq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap 75 (131)
T PF07726_consen 4 LEGVPGVGKTTLAKALAR--SLGLSFKR---IQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP 75 (131)
T ss_dssp EES---HHHHHHHHHHHH--HTT--EEE---EE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-
T ss_pred eECCCccHHHHHHHHHHH--HcCCceeE---EEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC
Confidence 679999999999999998 46666632 22233334444443211110000 112378888886654
No 314
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=94.30 E-value=0.11 Score=47.83 Aligned_cols=51 Identities=22% Similarity=0.160 Sum_probs=32.3
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTL 240 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~ 240 (297)
.+.=+++||.--+. |...-..+...+... ...|..||++|++.+....+|.
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l---------~~~g~tilisSH~l~e~~~~~d 240 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSL---------LARGKTILLTTHFMEEAERLCD 240 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHH---------HhCCCEEEEECCCHHHHHHhCC
Confidence 78889999988765 222222344444332 1357789999998776666664
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.28 E-value=0.36 Score=47.21 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||.+.+...
T Consensus 29 ~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 29 RYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999974
No 316
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=4.8 Score=37.78 Aligned_cols=22 Identities=32% Similarity=0.170 Sum_probs=18.6
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|..|+||||.+..+...
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999888763
No 317
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.25 E-value=0.2 Score=45.05 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=40.1
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCC
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGL 244 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~ 244 (297)
...=++..|..-+. |+..=..|...|.+... .-|-.|++.|+-.++.+.+|...-+
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~--------~lglTIvlITHEm~Vvk~ic~rVav 214 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINR--------ELGLTIVLITHEMEVVKRICDRVAV 214 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHH--------HcCCEEEEEechHHHHHHHhhhheE
Confidence 66677888888664 44455567777766432 6778899999989999999976443
No 318
>PRK13947 shikimate kinase; Provisional
Probab=94.24 E-value=0.025 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-|+|++|+||||+|+.+.+.
T Consensus 4 I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999883
No 319
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.22 E-value=0.15 Score=46.98 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=31.2
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAI 173 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i 173 (297)
.|+|..|+|||+|++.+.+.. +-+.++++-+.... .+.+++.++
T Consensus 161 ~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 161 AIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred EEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 588999999999999999852 23567777665543 445555554
No 320
>PTZ00035 Rad51 protein; Provisional
Probab=94.22 E-value=0.14 Score=47.17 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=28.7
Q ss_pred ccccccCCcchHHHHHHHhcccccc---c-CCCceEEEEeCCCCCHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVI---E-NFDKRIWVCVSDPFDEFR 168 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~ 168 (297)
..|+|.+|+|||||+..+.-..... . .=...+|+.....|+..+
T Consensus 121 teI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er 168 (337)
T PTZ00035 121 TELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER 168 (337)
T ss_pred EEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH
Confidence 4689999999999998886532221 0 112455777666655554
No 321
>PRK06820 type III secretion system ATPase; Validated
Probab=94.21 E-value=0.1 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||++.+...
T Consensus 166 i~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 166 IGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred EEEECCCCCChHHHHHHHhcc
Confidence 368899999999999999874
No 322
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=94.20 E-value=0.083 Score=50.58 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=42.4
Q ss_pred cccccCCcchHHHH-HHHhcccccccCCCce-EEEEeCCCC-CHHHHHHHHHHhhcCC----------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDVIENFDKR-IWVCVSDPF-DEFRIAKAIIEGLEGS---------------------- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~~~~~---------------------- 180 (297)
+|+|-.|+|||+|| ..+.+.. .-+.. +++.+.+.. .+.++.+.+...-...
T Consensus 145 ~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~ 220 (485)
T CHL00059 145 LIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYT 220 (485)
T ss_pred EeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHH
Confidence 68899999999995 5666531 23434 566665443 3455555554432211
Q ss_pred -----------CceEEEEEeCCCCC
Q 043781 181 -----------EKKFFLILDDVWTD 194 (297)
Q Consensus 181 -----------~kr~LiVlDdv~~~ 194 (297)
++..|+|+||+-..
T Consensus 221 a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 221 GAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HhhHHHHHHHcCCCEEEEEcChhHH
Confidence 89999999999654
No 323
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.039 Score=53.47 Aligned_cols=65 Identities=15% Similarity=0.081 Sum_probs=40.8
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCC-CC-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PF-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
=++|++|.|||.||+.+.+ ....+|-.+.+-.... .. ......++++..... .....|.+|.+..
T Consensus 280 Ll~GpPGtGKT~lAkava~--~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~-~~p~iiFiDEiDs 346 (494)
T COG0464 280 LLYGPPGTGKTLLAKAVAL--ESRSRFISVKGSELLSKWVGESEKNIRELFEKARK-LAPSIIFIDEIDS 346 (494)
T ss_pred EEECCCCCCHHHHHHHHHh--hCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHc-CCCcEEEEEchhh
Confidence 3789999999999999999 4555553222111111 11 223444444444432 5789999999975
No 324
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.19 E-value=0.026 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
++|.|..|+|||||++.+..-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999773
No 325
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.18 E-value=0.097 Score=49.46 Aligned_cols=69 Identities=25% Similarity=0.282 Sum_probs=41.9
Q ss_pred ccccccCCcchHHHHHHHhccccccc-------------------CC------CceEEEEeCCCCCHHH-----HHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIE-------------------NF------DKRIWVCVSDPFDEFR-----IAKAII 174 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~-------------------~F------~~~~wv~vs~~~~~~~-----~~~~i~ 174 (297)
..|+|..|+|||||++.+.+...... .+ ..++++.-++.+...+ ..-.++
T Consensus 140 i~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiA 219 (413)
T TIGR03497 140 VGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIA 219 (413)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999998887421100 01 1233444444433222 223445
Q ss_pred HhhcCCCceEEEEEeCCCC
Q 043781 175 EGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 175 ~~~~~~~kr~LiVlDdv~~ 193 (297)
+.+...++..|+++||+-.
T Consensus 220 Eyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 220 EYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHCCCCEEEEEcCcHH
Confidence 5554449999999999954
No 326
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.17 E-value=0.026 Score=46.04 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-++|++|+||||+|+.+...
T Consensus 7 i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 7 IVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999884
No 327
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.15 E-value=0.25 Score=47.68 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=33.8
Q ss_pred CceEEEEEeCCCCCCccCHHH---HHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh
Q 043781 181 EKKFFLILDDVWTDDYSKWEP---FHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT 241 (297)
Q Consensus 181 ~kr~LiVlDdv~~~~~~~w~~---l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~ 241 (297)
-+..|+.||+=-+. -+.+. |...|... ..+ .++|++|.++....+|..
T Consensus 238 ~kP~LLLLDEPtnh--LDleA~~wLee~L~k~----------d~~-~lVi~sh~QDfln~vCT~ 288 (614)
T KOG0927|consen 238 QKPDLLLLDEPTNH--LDLEAIVWLEEYLAKY----------DRI-ILVIVSHSQDFLNGVCTN 288 (614)
T ss_pred cCCCEEEecCCccC--CCHHHHHHHHHHHHhc----------cCc-eEEEEecchhhhhhHhhh
Confidence 88999999998775 23333 55555443 222 799999999888888764
No 328
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.15 E-value=0.34 Score=41.48 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=24.5
Q ss_pred ccccccccCCcchHHHHHHHhcccccccCCCceEEE
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWV 158 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv 158 (297)
.+..|+|+.|+|||||.+.+..-+.. =...+|+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i 61 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITV 61 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEE
Confidence 34578999999999999999884433 2345555
No 329
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.11 Score=47.06 Aligned_cols=66 Identities=20% Similarity=0.259 Sum_probs=45.0
Q ss_pred ccccCCcchHHHHHHHhccccc--ccCCCceEEEEeCC-----------CCCHHHHHHHHHHhhcCCCceEEEEEeCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDV--IENFDKRIWVCVSD-----------PFDEFRIAKAIIEGLEGSEKKFFLILDDVW 192 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~--~~~F~~~~wv~vs~-----------~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~ 192 (297)
+.|+||.|||+|.+.+++.-.+ .+.+.....+.++. .-.+..++++|-+-+...+.-..+.+|.|-
T Consensus 182 lhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 182 LHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred EeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHH
Confidence 5699999999999999996544 33443333333221 124667788887777766777778889884
No 330
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.12 E-value=0.029 Score=44.95 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.7
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-+.|++|+||||+|+.+...
T Consensus 3 ~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEcCCCCCHHHHHHHHHhh
Confidence 36799999999999999884
No 331
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.35 Score=41.78 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.7
Q ss_pred cccccCCcchHHHHHHHhcccc
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKD 147 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~ 147 (297)
.|.|+.|.||||||..+.-++.
T Consensus 34 aiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 34 AIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred EEECCCCCCHHHHHHHHhCCCC
Confidence 4779999999999999999864
No 332
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.11 E-value=0.09 Score=49.87 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||++.+...
T Consensus 158 igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 158 VGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred EEEECCCCCCccHHHHHHhcc
Confidence 368899999999999998874
No 333
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.10 E-value=0.094 Score=46.26 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=41.3
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC-----CceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----EKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-----~kr~LiVlDdv~~ 193 (297)
.-|+|.+|+|||+++.++.. +..++....+||+.... ..++.+.+.+ ++-. .+-.|.++|-.-.
T Consensus 26 ~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~ 94 (260)
T COG0467 26 VLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLS 94 (260)
T ss_pred EEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEcccc
Confidence 35889999999999988777 45555888999987654 3444444333 4333 4444555555443
No 334
>PRK04040 adenylate kinase; Provisional
Probab=94.10 E-value=0.027 Score=47.38 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|+|++|+||||+++.+.+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 356889999999999999988
No 335
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=94.09 E-value=0.081 Score=50.64 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=45.5
Q ss_pred ccccccCCcchHHHHHHHhcccccc---cCCCceEEEEeCCCC-CHHHHHHHHHHhhcCC--------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVI---ENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS-------------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~-~~~~~~~~i~~~~~~~-------------------- 180 (297)
.+|+|-.|+|||||+..+.++.... ..| .++++-+.+.- .+.+++.++...-...
T Consensus 146 ~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 224 (460)
T PRK04196 146 LPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTP 224 (460)
T ss_pred EEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHH
Confidence 3688999999999999998864432 122 45566554443 4556666555543221
Q ss_pred --------------CceEEEEEeCCCC
Q 043781 181 --------------EKKFFLILDDVWT 193 (297)
Q Consensus 181 --------------~kr~LiVlDdv~~ 193 (297)
+++.|+++||+-.
T Consensus 225 ~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 225 RMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 7999999999954
No 336
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.17 Score=46.51 Aligned_cols=118 Identities=21% Similarity=0.171 Sum_probs=65.1
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeC----CCCC-HHHHHHHHHHhhcCCCceEEEEEeCCCCC-----
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPFD-EFRIAKAIIEGLEGSEKKFFLILDDVWTD----- 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~~~----- 194 (297)
+-++|++|.|||.||+.+.. +....| +-|.+| .-|. ...+.+.++..... =+...|.+|.|...
T Consensus 130 iLL~GPpG~GKTmlAKA~Ak--eaga~f---Inv~~s~lt~KWfgE~eKlv~AvFslAsK-l~P~iIFIDEvds~L~~R~ 203 (386)
T KOG0737|consen 130 ILLYGPPGTGKTMLAKAIAK--EAGANF---INVSVSNLTSKWFGEAQKLVKAVFSLASK-LQPSIIFIDEVDSFLGQRR 203 (386)
T ss_pred ceecCCCCchHHHHHHHHHH--HcCCCc---ceeeccccchhhHHHHHHHHHHHHhhhhh-cCcceeehhhHHHHHhhcc
Confidence 34789999999999999999 555566 223333 2232 23344444333322 57889999998642
Q ss_pred --CccCHHHHHHHHhhhhhhhceeeecCCCCeEEE---EeccHHHHHHHHHhhCCCccccCCc
Q 043781 195 --DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSL---TSTCQEKLRHLTLTLGLRAKFPVSI 252 (297)
Q Consensus 195 --~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iii---TTr~~~~~~~v~~~~~~~~~~~l~~ 252 (297)
+.+.-..++.-|.-.=.++. ++.+.+||| |-|-.+....+.+.|...-.+.|..
T Consensus 204 s~dHEa~a~mK~eFM~~WDGl~----s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~ 262 (386)
T KOG0737|consen 204 STDHEATAMMKNEFMALWDGLS----SKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPD 262 (386)
T ss_pred cchHHHHHHHHHHHHHHhcccc----CCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCc
Confidence 11222223333321101110 244457777 5565666777777777543334433
No 337
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.09 E-value=0.24 Score=43.12 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.4
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|..|+|||||++.+.-
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 346899999999999999876
No 338
>PRK13949 shikimate kinase; Provisional
Probab=94.08 E-value=0.029 Score=46.27 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-|+|++|+|||||++.+.+.
T Consensus 4 I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999884
No 339
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.06 E-value=0.032 Score=38.65 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.8
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
.|.|.+|+||||+++.+.+.
T Consensus 3 ~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 3 AITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 47799999999999998884
No 340
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.04 E-value=0.12 Score=51.56 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..++|++|+||||+++.+...
T Consensus 113 llL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999974
No 341
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.04 E-value=0.029 Score=46.49 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=17.8
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-|+|++|+||||+|+.+...
T Consensus 3 ~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 3 FVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999873
No 342
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.04 E-value=0.53 Score=41.72 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|.|||||.+.+...
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999984
No 343
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=94.02 E-value=0.11 Score=50.09 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=44.7
Q ss_pred cccccCCcchHHHH-HHHhcccccccCCCc-eEEEEeCCCC-CHHHHHHHHHHhhcCC----------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDVIENFDK-RIWVCVSDPF-DEFRIAKAIIEGLEGS---------------------- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~~~~~---------------------- 180 (297)
+|+|-.|+|||||| ..+.+.. .-+. .+++-+.+.. .+.++.+.+...-...
T Consensus 166 ~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~ 241 (497)
T TIGR03324 166 LILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYA 241 (497)
T ss_pred EeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHH
Confidence 68899999999996 5777742 2344 5677776654 3556666555443222
Q ss_pred -----------CceEEEEEeCCCCC
Q 043781 181 -----------EKKFFLILDDVWTD 194 (297)
Q Consensus 181 -----------~kr~LiVlDdv~~~ 194 (297)
++..|||+||+-..
T Consensus 242 a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 242 ATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHhCCCCEEEEEcChhHH
Confidence 99999999999653
No 344
>PRK06217 hypothetical protein; Validated
Probab=93.98 E-value=0.03 Score=46.63 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=24.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCC--CceEEEE
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVC 159 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~ 159 (297)
+.|.|.+|+||||||+.+...... .+| |...|..
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~~ 39 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWLP 39 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeecc
Confidence 568899999999999999985332 233 4556654
No 345
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.96 E-value=0.065 Score=45.14 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhhhhcccccccCCcccccccccccccccccccccCCcchHHHHHHHhccc
Q 043781 83 KIIEINENLDDIAKQKEVFNFNVIRGSTEKSERIHSTALINVSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 83 ~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
++..+++.++.+.+.+..-... ...+....+.|+|.+|+|||||.+.+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 14 RIAKLRRELEKVKKQRELQRRR------------RKRSGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred HHHHHHHHHHHHHHhHHHHHHh------------hhhcCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 5666777777766554333211 111223456789999999999999988763
No 346
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=93.96 E-value=0.085 Score=51.00 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=42.2
Q ss_pred cccccCCcchHHHH-HHHhcccccccCCCce-EEEEeCCCC-CHHHHHHHHHHhhcCC----------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDVIENFDKR-IWVCVSDPF-DEFRIAKAIIEGLEGS---------------------- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~~~~~---------------------- 180 (297)
+|+|-.|+|||+|| ..+.+. . .-+.. +++.+.+.. .+.++...+...-...
T Consensus 166 ~Ifg~~g~GKt~lal~~i~~~--~--~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~ 241 (502)
T PRK09281 166 LIIGDRQTGKTAIAIDTIINQ--K--GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYA 241 (502)
T ss_pred EeecCCCCCchHHHHHHHHHh--c--CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHH
Confidence 68899999999995 555552 1 23443 666665554 3455555554432221
Q ss_pred -----------CceEEEEEeCCCCC
Q 043781 181 -----------EKKFFLILDDVWTD 194 (297)
Q Consensus 181 -----------~kr~LiVlDdv~~~ 194 (297)
++..|+|+||+-..
T Consensus 242 a~tiAEyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 242 GCAMGEYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHHHHHcCCCEEEEecCchHH
Confidence 89999999999654
No 347
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.93 E-value=0.22 Score=42.04 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|.|||||.+.+...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999885
No 348
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.91 E-value=0.032 Score=46.29 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=18.3
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|+|++|+||||+++.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999885
No 349
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.91 E-value=0.16 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|.|||||.+.+...
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999874
No 350
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.90 E-value=0.11 Score=48.94 Aligned_cols=68 Identities=19% Similarity=0.089 Sum_probs=37.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CCCHHHHHHHHHHhhcCC---CceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PFDEFRIAKAIIEGLEGS---EKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~~~~~~~~i~~~~~~~---~kr~LiVlDdv~~~ 194 (297)
.-++|++|+|||+||+.+.. ...-.|...-....+. ..+...++...+...... ..+-+|+||++...
T Consensus 119 iLL~GP~GsGKT~lAraLA~--~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl 193 (413)
T TIGR00382 119 ILLIGPTGSGKTLLAQTLAR--ILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKI 193 (413)
T ss_pred EEEECCCCcCHHHHHHHHHH--hcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchh
Confidence 34779999999999999987 3433441110001111 113444454444432211 23447899999754
No 351
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.86 E-value=0.07 Score=51.16 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=42.2
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCce-EEEEeCCCCCHHHHHHHH-HHhh---------c-CC-CceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKR-IWVCVSDPFDEFRIAKAI-IEGL---------E-GS-EKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~~~~~~~~i-~~~~---------~-~~-~kr~LiVlDdv~~ 193 (297)
+.|++|+|||+||+.+.....-...|... +-. + ...+++..+ +... . +. ..--++++|+++.
T Consensus 44 L~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~f--t---tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 44 LLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF--S---TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred EECCCChhHHHHHHHHHHHhcccCcceeeeeee--c---CcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 77999999999999999832222234311 111 1 123443322 1111 0 00 1222899999998
Q ss_pred CCccCHHHHHHHHh
Q 043781 194 DDYSKWEPFHNCLM 207 (297)
Q Consensus 194 ~~~~~w~~l~~~l~ 207 (297)
........|...+.
T Consensus 119 asp~~QsaLLeam~ 132 (498)
T PRK13531 119 AGPAILNTLLTAIN 132 (498)
T ss_pred CCHHHHHHHHHHHH
Confidence 76656666666663
No 352
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.86 E-value=0.033 Score=46.42 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=18.3
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-|+|.+|+||||+|+.+.+.
T Consensus 4 iilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 4 LILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999995
No 353
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.84 E-value=0.032 Score=48.08 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
++|.|..|+||||||+.+...
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 478899999999999999873
No 354
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.83 E-value=0.033 Score=48.67 Aligned_cols=21 Identities=33% Similarity=0.276 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHhcccc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKD 147 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~ 147 (297)
|+|++|+||||+++.+.+.-.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999988543
No 355
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.83 E-value=0.034 Score=44.49 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=17.8
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-++|++|+||||||+.+...
T Consensus 3 ~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 3 VLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999873
No 356
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.82 E-value=0.4 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||.+.+...
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 31 SWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3579999999999999999874
No 357
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=93.82 E-value=0.28 Score=40.02 Aligned_cols=21 Identities=24% Similarity=0.031 Sum_probs=15.6
Q ss_pred cccccccCCcchHH-HHHHHhc
Q 043781 124 VSDVRGMGGIGKTT-LAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTt-La~~v~~ 144 (297)
..-|.|..|+|||+ ++..+++
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHH
Confidence 34577999999999 5555555
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.74 E-value=0.92 Score=41.41 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=19.7
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|++|+||||++..+...
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999888774
No 359
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.73 E-value=0.19 Score=50.77 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
++|+|..|+|||||+|.+..
T Consensus 502 vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999987
No 360
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.73 E-value=0.089 Score=44.94 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|.+|+|||||+.++...
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~ 42 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVE 42 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999888763
No 361
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.72 E-value=0.037 Score=44.48 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHhcc
Q 043781 127 VRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~ 145 (297)
|+|++|+||||+|+.+...
T Consensus 1 i~G~PgsGK~t~~~~la~~ 19 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKR 19 (151)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHh
Confidence 6899999999999999984
No 362
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.71 E-value=0.29 Score=42.77 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=38.2
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT 241 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~ 241 (297)
++.=|+|||.=.+. |+..-+.|+....+. ...|..||..|+..+.+..+|..
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~l---------k~~GatIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFEL---------KEEGATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHH---------HhcCCEEEEecchHHHHHHHhhh
Confidence 88999999987664 333445566665543 37889999999988888888754
No 363
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.64 E-value=0.26 Score=41.69 Aligned_cols=22 Identities=18% Similarity=-0.013 Sum_probs=19.1
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
+...|.|..|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4567889999999999999984
No 364
>PRK06547 hypothetical protein; Provisional
Probab=93.64 E-value=0.037 Score=45.80 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=19.6
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+.|.|.+|+||||||+.+.+.
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999999874
No 365
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.63 E-value=0.074 Score=47.68 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhhHHHHHHHHH
Q 043781 4 FFQDFGKQVKKLTSNLRAIQAVLNDA-EQRQVKEASVRLWLDQLKEASYDMEDVLDEWI 61 (297)
Q Consensus 4 ll~~~~~~~~~L~~eL~~i~a~l~~a-e~~~~~~~~v~~Wl~~lr~~ayd~eD~ld~~~ 61 (297)
.+.-++.+++.++.+|+.++.|++.. +.....-.....+..++-+.||++|.++|.+.
T Consensus 315 SlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 315 SLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 45567899999999999999999987 44233334489999999999999999999884
No 366
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.61 E-value=0.092 Score=45.15 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=28.3
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 166 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 166 (297)
...|+|.+|+|||+|+.++... ....-...+|+... .++.
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~ 64 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSP 64 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCH
Confidence 3468899999999999888874 22233567788766 4443
No 367
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.60 E-value=0.04 Score=44.81 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.8
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
.++|++|+||||+|+.+.+.
T Consensus 2 ~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 47899999999999998874
No 368
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=93.60 E-value=0.1 Score=50.39 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=44.5
Q ss_pred cccccCCcchHHHH-HHHhcccccccCCCce-EEEEeCCCC-CHHHHHHHHHHhhcCC----------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDVIENFDKR-IWVCVSDPF-DEFRIAKAIIEGLEGS---------------------- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~~~~~---------------------- 180 (297)
+|+|-.|+|||+|| ..+.+.. ..+.. +++-+.+.. .+.++.+.+...-...
T Consensus 165 ~I~g~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~ 240 (501)
T TIGR00962 165 LIIGDRQTGKTAVAIDTIINQK----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYT 240 (501)
T ss_pred EeecCCCCCccHHHHHHHHhhc----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHH
Confidence 68899999999996 6676631 34554 677666644 4456666655543222
Q ss_pred -----------CceEEEEEeCCCCC
Q 043781 181 -----------EKKFFLILDDVWTD 194 (297)
Q Consensus 181 -----------~kr~LiVlDdv~~~ 194 (297)
++..|||+||+-..
T Consensus 241 a~aiAEyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 241 GCTMAEYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHHHHHcCCCEEEEecchHHH
Confidence 89999999999654
No 369
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.59 E-value=0.34 Score=40.99 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=17.7
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...++|+.|+||||.+-++...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHH
Confidence 3458999999999988777664
No 370
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=93.58 E-value=0.11 Score=49.37 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.9
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
+|+|..|+|||||.+.+.+.
T Consensus 179 ~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 179 GLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred EEECCCCCCccHHHHHHhCC
Confidence 68899999999999988874
No 371
>PRK05636 replicative DNA helicase; Provisional
Probab=93.57 E-value=2.8 Score=40.85 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=30.2
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhh
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGL 177 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~ 177 (297)
-|-|.+|+|||+||..+..+...+.... ++++ |-..+..++...++...
T Consensus 269 iiaarpg~GKT~~al~~a~~~a~~~g~~-v~~f--SlEMs~~ql~~R~ls~~ 317 (505)
T PRK05636 269 IVAARPGVGKSTLALDFMRSASIKHNKA-SVIF--SLEMSKSEIVMRLLSAE 317 (505)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCe-EEEE--EeeCCHHHHHHHHHHHh
Confidence 3569999999999988876533333332 2222 44455666666665554
No 372
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.56 E-value=0.12 Score=47.04 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=28.2
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 166 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 166 (297)
.+.|+|..|+||||||..+... ....-...+|+.....++.
T Consensus 55 ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~ 95 (322)
T PF00154_consen 55 IVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDP 95 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---H
T ss_pred eEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchh
Confidence 4579999999999999888773 4444456788877665544
No 373
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.56 E-value=0.54 Score=39.96 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+|.|..|.||||+.+.++.
T Consensus 30 i~GlLG~NGAGKTT~LRmiat 50 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIAT 50 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHH
Confidence 357889999999999999997
No 374
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.54 E-value=0.62 Score=42.13 Aligned_cols=121 Identities=15% Similarity=0.067 Sum_probs=73.4
Q ss_pred ccccCCcchHHHHHHHhccc---c---cc--cCCCceEEEEe-CCCCCHHHHHHHHHHhhcCC----CceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDK---D---VI--ENFDKRIWVCV-SDPFDEFRIAKAIIEGLEGS----EKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~---~---~~--~~F~~~~wv~v-s~~~~~~~~~~~i~~~~~~~----~kr~LiVlDdv~~ 193 (297)
++|..|.||+++|+.+.+.- . +. .|-+-..++.. .....+.++. ++.+.+... +++=++|+|++..
T Consensus 23 f~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~~~~~~~KvvII~~~e~ 101 (299)
T PRK07132 23 LKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSSFVQSQKKILIIKNIEK 101 (299)
T ss_pred EeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCCcccCCceEEEEecccc
Confidence 67999999999998887631 0 11 12112333332 2345555554 555555432 5888899999977
Q ss_pred CCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCCccccCCccchhhhhhh
Q 043781 194 DDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 194 ~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~~~~~l~~l~~~~lf~~ 261 (297)
......+.|...+..- ...+.+|++|... ..+..+ ..-..++++.+++..++..|
T Consensus 102 m~~~a~NaLLK~LEEP----------p~~t~~il~~~~~---~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 102 TSNSLLNALLKTIEEP----------PKDTYFLLTTKNI---NKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred cCHHHHHHHHHHhhCC----------CCCeEEEEEeCCh---HhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 6555667777777652 5566666666533 344333 22236788888887776555
No 375
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.54 E-value=0.041 Score=45.48 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||++.+...
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999998774
No 376
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.52 E-value=0.16 Score=47.21 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=48.2
Q ss_pred ccccccCCcchHHHHHHHhcccccc----cCCCce-EEEE-----e-CCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVI----ENFDKR-IWVC-----V-SDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~----~~F~~~-~wv~-----v-s~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
.=|||..|.|||.|+-.+|+.-.++ -||-.- ..|+ . .....+..+.+.|. ++..||.||...=
T Consensus 65 lYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~------~~~~lLcfDEF~V 138 (362)
T PF03969_consen 65 LYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA------KESRLLCFDEFQV 138 (362)
T ss_pred EEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH------hcCCEEEEeeeec
Confidence 3478999999999999999964442 233100 0000 0 11112222222222 4666999999876
Q ss_pred CCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEe
Q 043781 194 DDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTS 229 (297)
Q Consensus 194 ~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTT 229 (297)
.|..+=--|...|.... ..|..+|.||
T Consensus 139 ~DiaDAmil~rLf~~l~---------~~gvvlVaTS 165 (362)
T PF03969_consen 139 TDIADAMILKRLFEALF---------KRGVVLVATS 165 (362)
T ss_pred cchhHHHHHHHHHHHHH---------HCCCEEEecC
Confidence 64333223444444331 5566566665
No 377
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.50 E-value=0.29 Score=43.74 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=31.2
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLT 239 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~ 239 (297)
.+.=+++||..-.. |......+...+..... ..|..||++|++.+.....|
T Consensus 158 ~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~--------~~g~tillvsH~~~~~~~~~ 209 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK--------ELGLTIIIATHDIDIVPLYC 209 (283)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--------hCCCEEEEEecCHHHHHHhC
Confidence 77889999998765 22333345455543211 33678899998765544444
No 378
>PRK14530 adenylate kinase; Provisional
Probab=93.50 E-value=0.041 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|+|++|+||||+++.+...
T Consensus 6 I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999763
No 379
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=93.47 E-value=0.1 Score=50.34 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=41.3
Q ss_pred cccccCCcchHHHH-HHHhcccccccCCCce-EEEEeCCCC-CHHHHHHHHHHhh-------------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDVIENFDKR-IWVCVSDPF-DEFRIAKAIIEGL------------------------- 177 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~~------------------------- 177 (297)
.|+|-.|+|||+|| ..+.+. ..-+.. +++-+.+.. .+.++.+.+...-
T Consensus 166 ~I~g~~g~GKt~Lal~~i~~~----~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~ 241 (502)
T PRK13343 166 LIIGDRQTGKTAIAIDAIINQ----KDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFA 241 (502)
T ss_pred EeeCCCCCCccHHHHHHHHhh----cCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHH
Confidence 58899999999995 666653 123443 555555543 2344444444332
Q ss_pred --------cCCCceEEEEEeCCCCC
Q 043781 178 --------EGSEKKFFLILDDVWTD 194 (297)
Q Consensus 178 --------~~~~kr~LiVlDdv~~~ 194 (297)
...++..|||+||+-..
T Consensus 242 a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 242 GCAIAEYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHHHHHHhCCCCEEEEecchHHH
Confidence 21299999999999654
No 380
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.44 E-value=0.13 Score=46.73 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=33.0
Q ss_pred cccccccCCcchHHHHHHHhccccccc----CCCceEEEEeCCCCCHHHHH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIA 170 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~ 170 (297)
...|+|.+|+|||||+.+++.+..... .=...+||.....|+..++.
T Consensus 97 i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~ 147 (310)
T TIGR02236 97 ITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM 147 (310)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH
Confidence 446899999999999988876432211 11268899988877766543
No 381
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.41 E-value=0.34 Score=42.16 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=25.3
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA 172 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 172 (297)
-|.|.+|+|||+||.++... ..+ .=+..+|++... +..++.+.
T Consensus 25 lI~G~pGsGKT~la~~~l~~-~~~-~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 25 LLSGGPGTGKSIFSQQFLWN-GLQ-MGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred EEEcCCCCCHHHHHHHHHHH-HHH-cCCcEEEEEeeC--CHHHHHHH
Confidence 47799999999999765442 122 233455665433 33344443
No 382
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.41 E-value=0.47 Score=47.00 Aligned_cols=115 Identities=24% Similarity=0.320 Sum_probs=68.6
Q ss_pred ccccccCCcchHH-HHHHHhcccccccCCCceEEEEeCCCCCHHH--HHHHHHHhhcCC---------------------
Q 043781 125 SDVRGMGGIGKTT-LAQFAYNDKDVIENFDKRIWVCVSDPFDEFR--IAKAIIEGLEGS--------------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--~~~~i~~~~~~~--------------------- 180 (297)
+-|+|-.|+|||| |++++|.+.-..+ -.|.+.++-.+.. +.+.+.+.++..
T Consensus 374 vvivgETGSGKTTQl~QyL~edGY~~~-----GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~I 448 (1042)
T KOG0924|consen 374 VVIVGETGSGKTTQLAQYLYEDGYADN-----GMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKI 448 (1042)
T ss_pred EEEEecCCCCchhhhHHHHHhcccccC-----CeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeE
Confidence 3578999999987 7799998643332 2455566655443 344555555332
Q ss_pred ------------------CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhh
Q 043781 181 ------------------EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTL 242 (297)
Q Consensus 181 ------------------~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~ 242 (297)
.|=-.||+|.+.+.. -.-+-|-..|+.... -...-++|||+-+.+ +.+.+.-+
T Consensus 449 kymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~la-------rRrdlKliVtSATm~-a~kf~nfF 519 (1042)
T KOG0924|consen 449 KYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLA-------RRRDLKLIVTSATMD-AQKFSNFF 519 (1042)
T ss_pred EEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHH-------hhccceEEEeecccc-HHHHHHHh
Confidence 666788899987652 233333333433322 155679999986555 45565555
Q ss_pred CC-------CccccCCcc
Q 043781 243 GL-------RAKFPVSIF 253 (297)
Q Consensus 243 ~~-------~~~~~l~~l 253 (297)
|- ...||++.+
T Consensus 520 gn~p~f~IpGRTyPV~~~ 537 (1042)
T KOG0924|consen 520 GNCPQFTIPGRTYPVEIM 537 (1042)
T ss_pred CCCceeeecCCccceEEE
Confidence 51 245666655
No 383
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.40 E-value=0.12 Score=47.04 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=32.6
Q ss_pred cccccccCCcchHHHHHHHhcccccccCC----CceEEEEeCCCCCHHHHH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENF----DKRIWVCVSDPFDEFRIA 170 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~ 170 (297)
...|+|.+|+|||+|+.++.-+......+ ...+||.....|+..++.
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~ 154 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE 154 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH
Confidence 34689999999999998887542221111 367899888777766544
No 384
>PRK06696 uridine kinase; Validated
Probab=93.34 E-value=0.043 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.8
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
-.++|-|.+|+||||||+.+...
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35678899999999999999883
No 385
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.28 E-value=1 Score=42.19 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=19.1
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|+.|+||||++..+...
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999888763
No 386
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.24 E-value=0.05 Score=45.44 Aligned_cols=21 Identities=24% Similarity=0.185 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||++.+...
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 458899999999999999874
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.23 E-value=0.46 Score=40.09 Aligned_cols=20 Identities=25% Similarity=0.099 Sum_probs=17.9
Q ss_pred cccccccCCcchHHHHHHHh
Q 043781 124 VSDVRGMGGIGKTTLAQFAY 143 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~ 143 (297)
...|.|+.|.|||||.+.+.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 36788999999999999988
No 388
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.23 E-value=0.055 Score=41.16 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=18.6
Q ss_pred cccccCCcchHHHHHHHhcccc
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKD 147 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~ 147 (297)
-|+|..|+|||||.+.+.+.+.
T Consensus 3 ~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 3 VVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEECSTTSSHHHHHHHHHHSS-
T ss_pred EEECcCCCCHHHHHHHHhcCCC
Confidence 4789999999999999987643
No 389
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.21 E-value=0.24 Score=42.58 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=37.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC-----CceEEEEEeCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----EKKFFLILDDV 191 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-----~kr~LiVlDdv 191 (297)
..|.|.+|+|||||+..+.... .+ .-...+|++... +..++... +++++.. .+..|.++|++
T Consensus 23 ~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~--~~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~ 89 (229)
T TIGR03881 23 VAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEE--SRESIIRQ-AAQFGMDFEKAIEEGKLVIIDAL 89 (229)
T ss_pred EEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccC--CHHHHHHH-HHHhCCCHHHHhhcCCEEEEEcc
Confidence 3578999999999998765531 22 234567776543 34444433 4444433 23346778876
No 390
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.3 Score=49.18 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=36.5
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC------CH-HHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF------DE-FRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~-~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
=++|++|+|||-||+.++....+ .| +++|..- .+ ..-.++++..... ...++|.+|++..
T Consensus 348 LL~GPPGTGKTLLAKAiAGEAgV--PF-----~svSGSEFvE~~~g~~asrvr~lf~~ar~-~aP~iifideida 414 (774)
T KOG0731|consen 348 LLVGPPGTGKTLLAKAIAGEAGV--PF-----FSVSGSEFVEMFVGVGASRVRDLFPLARK-NAPSIIFIDEIDA 414 (774)
T ss_pred EEECCCCCcHHHHHHHHhcccCC--ce-----eeechHHHHHHhcccchHHHHHHHHHhhc-cCCeEEEeccccc
Confidence 37899999999999999994333 33 2222210 00 1222333333322 6788999998875
No 391
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.14 E-value=0.052 Score=42.94 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|.+|+||||+|+.+...
T Consensus 2 I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999873
No 392
>PRK14532 adenylate kinase; Provisional
Probab=93.14 E-value=0.051 Score=45.31 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=17.6
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-++|++|+||||+|+.+...
T Consensus 4 ~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 4 ILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999873
No 393
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.13 E-value=0.052 Score=45.62 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
++|.|.+|+||||||+.+...
T Consensus 2 i~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999884
No 394
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.13 E-value=0.069 Score=45.44 Aligned_cols=51 Identities=20% Similarity=0.110 Sum_probs=30.8
Q ss_pred ccccccCCcchHHHHHHHhcccc-----cccCCCceEEEEeCCCCCHHHHHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKD-----VIENFDKRIWVCVSDPFDEFRIAKAIIE 175 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 175 (297)
.-|.|++|.||||++..+...-. ....-...+-++...+..+..++..+.+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred EEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 45789999999976655555310 1134455566666666666777777666
No 395
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.12 E-value=0.073 Score=43.31 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=17.2
Q ss_pred ccccCCcchHHHHHHHhcc
Q 043781 127 VRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.+|+||||||+.+...
T Consensus 7 ltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 7 LTGLSGSGKTTLARALERR 25 (156)
T ss_dssp EESSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5699999999999999983
No 396
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.08 E-value=0.32 Score=48.22 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=59.7
Q ss_pred ccccCCcchHHHHHHHhcccc------cccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC--------------------
Q 043781 127 VRGMGGIGKTTLAQFAYNDKD------VIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-------------------- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-------------------- 180 (297)
|-|.+|+|||..+..|.+.-+ --..| ..+.|+.-.-..+.++...|+.++.+.
T Consensus 427 IsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~ 505 (767)
T KOG1514|consen 427 ISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKP 505 (767)
T ss_pred EecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCC
Confidence 569999999999999988422 12234 334455555557889999999999876
Q ss_pred -CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEe
Q 043781 181 -EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTS 229 (297)
Q Consensus 181 -~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTT 229 (297)
.+..+|++|++...- .-=+++...|-+. ++.++|+++|-+
T Consensus 506 ~~~~~VvLiDElD~Lv-tr~QdVlYn~fdW--------pt~~~sKLvvi~ 546 (767)
T KOG1514|consen 506 KRSTTVVLIDELDILV-TRSQDVLYNIFDW--------PTLKNSKLVVIA 546 (767)
T ss_pred CCCCEEEEeccHHHHh-cccHHHHHHHhcC--------CcCCCCceEEEE
Confidence 677888988885431 0011232223221 147888877754
No 397
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.07 E-value=0.056 Score=44.64 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||++.+...
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHcc
Confidence 457899999999999999983
No 398
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.42 Score=46.16 Aligned_cols=94 Identities=19% Similarity=0.228 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHhhhhcccccccCCcccccccccccccccccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC
Q 043781 83 KIIEINENLDDIAKQKEVFNFNVIRGSTEKSERIHSTALINVSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 162 (297)
Q Consensus 83 ~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 162 (297)
.+.+.+..|+++.+-.+.-.-.. +.--.+...+=++|++|.|||.||+.|.....| .| |.....
T Consensus 308 G~DEAK~ELeEiVefLkdP~kft----------rLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V--PF----F~~sGS 371 (752)
T KOG0734|consen 308 GVDEAKQELEEIVEFLKDPTKFT----------RLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV--PF----FYASGS 371 (752)
T ss_pred ChHHHHHHHHHHHHHhcCcHHhh----------hccCcCCCceEEeCCCCCchhHHHHHhhcccCC--Ce----Eecccc
Confidence 46777788888875542221110 111112233458899999999999999985433 22 222222
Q ss_pred CCCH------HHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 163 PFDE------FRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 163 ~~~~------~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
.|+- .+-.++++.+... .-.++|.+|.+..
T Consensus 372 EFdEm~VGvGArRVRdLF~aAk~-~APcIIFIDEiDa 407 (752)
T KOG0734|consen 372 EFDEMFVGVGARRVRDLFAAAKA-RAPCIIFIDEIDA 407 (752)
T ss_pred chhhhhhcccHHHHHHHHHHHHh-cCCeEEEEechhh
Confidence 2221 1223444444433 5689999999975
No 399
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.99 E-value=0.37 Score=48.75 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
..|+|..|+|||||++.+..
T Consensus 494 iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 494 VAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999976
No 400
>PRK13975 thymidylate kinase; Provisional
Probab=92.95 E-value=0.055 Score=45.35 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|+.|+||||+++.+.+.
T Consensus 5 I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 357799999999999999984
No 401
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.91 E-value=0.058 Score=44.55 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-+.|++|+||||+|+.+...
T Consensus 5 i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 346799999999999999874
No 402
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.90 E-value=1.5 Score=36.47 Aligned_cols=19 Identities=21% Similarity=0.008 Sum_probs=16.7
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
-|.|..|.||||+.+.+.-
T Consensus 3 ~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 3 IITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 3789999999999999883
No 403
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.90 E-value=0.16 Score=42.28 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|+.|+||||+++.+.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 346799999999999999884
No 404
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=92.89 E-value=0.32 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.2
Q ss_pred ccccccCCcchHHHHHHHhccc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
+.|+|.+|+|||||...+.+..
T Consensus 206 VvIvG~~nvGKSSLiN~L~~~~ 227 (442)
T TIGR00450 206 LAIVGSPNVGKSSLLNALLKQD 227 (442)
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999998753
No 405
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.88 E-value=0.057 Score=44.95 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
++|.|.+|+||||||+.+...
T Consensus 2 i~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999874
No 406
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.88 E-value=0.063 Score=44.28 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.0
Q ss_pred ccccccCCcchHHHHHHHhcccccccCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENF 152 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F 152 (297)
+-++||.|+||||+.+.+.+ ...-+|
T Consensus 5 IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 35789999999999999988 454455
No 407
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=92.86 E-value=0.23 Score=47.05 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=44.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC-HHHHHHHHHHhhcCC-----------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-EFRIAKAIIEGLEGS----------------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~~~~~----------------------- 180 (297)
.+|+|-.|+|||+|+.++.+... -+..+++-+..... +.++..++.+.-..+
T Consensus 143 igIF~gaGvgk~~L~~~ia~~~~----~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~A 218 (436)
T PRK02118 143 IPIFSVSGEPYNALLARIALQAE----ADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMA 218 (436)
T ss_pred EEEEeCCCCCHHHHHHHHHHhhC----CCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHH
Confidence 47889999999999999877422 24566776655543 344555444433222
Q ss_pred ----------C-ceEEEEEeCCCCC
Q 043781 181 ----------E-KKFFLILDDVWTD 194 (297)
Q Consensus 181 ----------~-kr~LiVlDdv~~~ 194 (297)
+ +..|+++||+-..
T Consensus 219 ltiAEyfrd~g~~~VLli~DdlTr~ 243 (436)
T PRK02118 219 LAVAEKFALEGKKKVLVLLTDMTNF 243 (436)
T ss_pred HHHHHHHHhcCCCCEEEeccCchHH
Confidence 4 9999999999654
No 408
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.83 E-value=0.39 Score=36.62 Aligned_cols=34 Identities=15% Similarity=-0.046 Sum_probs=22.2
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEE
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC 159 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~ 159 (297)
-|.|..|+|||+.+................+|++
T Consensus 4 ~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 4 LLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred EEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 3679999999999977766433222334555554
No 409
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.82 E-value=5.2 Score=37.99 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=28.1
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIE 175 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 175 (297)
-|-|.+|+|||+++..+..+....... .++|++. ..+..++...++.
T Consensus 199 vi~g~pg~GKT~~~l~~a~~~a~~~g~-~vl~~Sl--Em~~~~i~~R~~~ 245 (434)
T TIGR00665 199 ILAARPSMGKTAFALNIAENAAIKEGK-PVAFFSL--EMSAEQLAMRMLS 245 (434)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCC-eEEEEeC--cCCHHHHHHHHHH
Confidence 355999999999998877643222222 3455543 3344555554444
No 410
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.82 E-value=0.94 Score=40.28 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=37.2
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT 241 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~ 241 (297)
++.-++.||..--. |...-..++..+..... ..++.|++||+.-+.....|..
T Consensus 173 h~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~--------~~~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 173 HPPKVLFLDEPTVGLDVNAQANIREFLKEYNE--------ERQATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred CCCcEEEecCCccCcchhHHHHHHHHHHHHHH--------hhCceEEEEecchhhHHHhhhh
Confidence 77888999987432 22345567777776533 7789999999987666666653
No 411
>PRK13409 putative ATPase RIL; Provisional
Probab=92.82 E-value=0.82 Score=45.39 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||++.+...
T Consensus 368 v~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 368 IGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 368899999999999999974
No 412
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.80 E-value=0.061 Score=44.31 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.+.|++|+||||+|+.+...
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999884
No 413
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.78 E-value=0.062 Score=44.30 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=16.5
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-|.|.+|+|||||++.+.+.
T Consensus 3 ~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 3 FITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEES-TTSSHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHH
Confidence 36799999999999998874
No 414
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.77 E-value=0.32 Score=49.20 Aligned_cols=80 Identities=18% Similarity=0.089 Sum_probs=42.2
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhc----C----------CCceEEEEEeCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE----G----------SEKKFFLILDDV 191 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~----~----------~~kr~LiVlDdv 191 (297)
-|+|..|+|||++|+.+++...- .. ...+.+....-. ...+-..++.... + ....=.|+||+|
T Consensus 403 LI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~~-~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei 479 (686)
T PRK15429 403 LILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAMP-AGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 479 (686)
T ss_pred EEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccCC-hhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEech
Confidence 47799999999999999884211 11 122333322211 1111111111000 0 012336999999
Q ss_pred CCCCccCHHHHHHHHhh
Q 043781 192 WTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 192 ~~~~~~~w~~l~~~l~~ 208 (297)
..-..+....|...+..
T Consensus 480 ~~L~~~~Q~~L~~~l~~ 496 (686)
T PRK15429 480 GDMPLELQPKLLRVLQE 496 (686)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 88765555566666643
No 415
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.74 E-value=0.062 Score=44.79 Aligned_cols=20 Identities=30% Similarity=0.192 Sum_probs=17.9
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-|+|++|+||||+|+.+...
T Consensus 3 ~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 3 LLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999874
No 416
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.74 E-value=0.44 Score=43.53 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=42.6
Q ss_pred cccccCCcchHHHHHHHhcc-------ccc---ccC----CCceEEEE--eCCCCCHHHHHHHHHHhhcCCCceEEEEEe
Q 043781 126 DVRGMGGIGKTTLAQFAYND-------KDV---IEN----FDKRIWVC--VSDPFDEFRIAKAIIEGLEGSEKKFFLILD 189 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~-------~~~---~~~----F~~~~wv~--vs~~~~~~~~~~~i~~~~~~~~kr~LiVlD 189 (297)
-|.|..|+|||||++.+... +++ .+. +...-|+. .+...+..++++..++. ..=.||+.
T Consensus 152 lI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~-----~PD~IivG 226 (319)
T PRK13894 152 LVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRM-----RPDRILVG 226 (319)
T ss_pred EEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcC-----CCCEEEEe
Confidence 46799999999999988753 110 011 11112332 34456677777666643 34458889
Q ss_pred CCCCCCccCHHHHH
Q 043781 190 DVWTDDYSKWEPFH 203 (297)
Q Consensus 190 dv~~~~~~~w~~l~ 203 (297)
.+... +.|+.|+
T Consensus 227 EiR~~--Ea~~~l~ 238 (319)
T PRK13894 227 EVRGP--EALDLLM 238 (319)
T ss_pred ccCCH--HHHHHHH
Confidence 99877 4665543
No 417
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.73 E-value=0.49 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.2
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.++|.+|+||||++..+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 3567999999999999988876
No 418
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.71 E-value=0.063 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||++.+...
T Consensus 8 i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 8 IVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999884
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=92.69 E-value=0.46 Score=40.78 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=18.0
Q ss_pred ccccccccCCcchHHHHHHHh
Q 043781 123 NVSDVRGMGGIGKTTLAQFAY 143 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~ 143 (297)
....|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 345788999999999999985
No 420
>PRK13409 putative ATPase RIL; Provisional
Probab=92.68 E-value=0.72 Score=45.81 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=19.9
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...+|+|..|+|||||.+.+..-
T Consensus 100 ev~gLvG~NGaGKSTLlkiL~G~ 122 (590)
T PRK13409 100 KVTGILGPNGIGKTTAVKILSGE 122 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34579999999999999999884
No 421
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=92.66 E-value=1 Score=43.22 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=28.5
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEec
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
...-+|.||..-+. |...=.+|...+.+.. .+.+.|+|.-|
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlc---------a~RTtIVvAHR 732 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLC---------ANRTTIVVAHR 732 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHh---------cCCceEEEeee
Confidence 67889999988654 2234456888887753 56667777766
No 422
>PRK07667 uridine kinase; Provisional
Probab=92.65 E-value=0.064 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.++|-|.+|+||||||+.+...
T Consensus 19 iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999873
No 423
>COG3899 Predicted ATPase [General function prediction only]
Probab=92.64 E-value=0.7 Score=47.86 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.+.|..|+|||.|++.|...
T Consensus 26 ~~lv~G~sGIGKsalv~ev~~~ 47 (849)
T COG3899 26 VVLVAGESGIGKSALVNEVHKP 47 (849)
T ss_pred EEEEeecCCCcHHHHHHHHHHH
Confidence 4568899999999999999983
No 424
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=92.64 E-value=0.21 Score=39.17 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhccc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
+.++|.+|+|||+|...+.+..
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCc
Confidence 4589999999999999987753
No 425
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=92.64 E-value=0.071 Score=41.79 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHhcc
Q 043781 127 VRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~ 145 (297)
|+|.+|+|||||++.+++.
T Consensus 1 i~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc
Confidence 5799999999999999875
No 426
>PRK13948 shikimate kinase; Provisional
Probab=92.60 E-value=0.067 Score=44.72 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+-++||.|+||||+++.+.+.
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999999999883
No 427
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.60 E-value=0.51 Score=46.69 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||++.+..-
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999873
No 428
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.60 E-value=0.067 Score=44.18 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|+.|+|||||++.+.+.
T Consensus 7 I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHH
Confidence 568899999999999999874
No 429
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.57 E-value=8.2 Score=39.71 Aligned_cols=22 Identities=23% Similarity=-0.001 Sum_probs=18.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|.|+.|.|||||.+.+...
T Consensus 324 ~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 324 VLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred EEEEECCCCCCchHHHHHHHHH
Confidence 4568899999999999988653
No 430
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.56 E-value=0.069 Score=43.74 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-|+|++|+||||+++.+.+.
T Consensus 5 i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999983
No 431
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=92.56 E-value=0.43 Score=46.58 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||++.+..-
T Consensus 351 ~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 351 VALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999773
No 432
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.55 E-value=0.066 Score=46.90 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=17.5
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-++|++|+||||+|+.+...
T Consensus 3 vl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 36799999999999998873
No 433
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.52 E-value=0.21 Score=46.00 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=16.9
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
-|.|+.|+||||+.+.+.+
T Consensus 126 li~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 126 LVTGPTGSGKSTTLASMID 144 (343)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4679999999999998876
No 434
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.51 E-value=0.069 Score=46.36 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-|+|++|+||||+|+.+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 557899999999999999874
No 435
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.17 Score=47.67 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=37.8
Q ss_pred ccccCCcchHHHHHHHhcccccccCC-CceEEEEeCCCCCH-HHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDE-FRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~-~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
++|++|.|||.|++.|+- +....| +..+.--.+...+. +.+.+.++.-... .+..+|++|++..
T Consensus 191 LfGPpgtGKtmL~~aiAs--E~~atff~iSassLtsK~~Ge~eK~vralf~vAr~-~qPsvifidEids 256 (428)
T KOG0740|consen 191 LFGPPGTGKTMLAKAIAT--ESGATFFNISASSLTSKYVGESEKLVRALFKVARS-LQPSVIFIDEIDS 256 (428)
T ss_pred eecCCCCchHHHHHHHHh--hhcceEeeccHHHhhhhccChHHHHHHHHHHHHHh-cCCeEEEechhHH
Confidence 779999999999999998 454443 22221111222222 2333333322222 5889999999975
No 436
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=92.49 E-value=0.16 Score=46.77 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=50.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHhhcCC-----------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS----------------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~~~~~----------------------- 180 (297)
++++|=+|+|||.|.+.+-++ -.+.|=...+|.-+.... .-.++..++.++--.+
T Consensus 150 iGLFGGAGVGKTVl~~ELI~N-ia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtG 228 (468)
T COG0055 150 IGLFGGAGVGKTVLIQELINN-IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTG 228 (468)
T ss_pred eeeeccCCccceeeHHHHHHH-HHHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhh
Confidence 478899999999999888885 223455567777766554 3466777776664332
Q ss_pred -----------CceEEEEEeCCCCC
Q 043781 181 -----------EKKFFLILDDVWTD 194 (297)
Q Consensus 181 -----------~kr~LiVlDdv~~~ 194 (297)
++..|+.+||+..-
T Consensus 229 lT~AEyfRD~~gqdVLlFIDNIfRf 253 (468)
T COG0055 229 LTMAEYFRDEEGQDVLLFIDNIFRF 253 (468)
T ss_pred hhHHHHhhcccCCeEEEEehhhhHH
Confidence 89999999999763
No 437
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.49 E-value=0.14 Score=51.38 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=37.9
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC------CCCHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD------PFDEFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~------~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
.-++|++|+|||++|+.+.+. ..-+| +.+..+. ... ...++.++..... ....+|+||+++..
T Consensus 188 ill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~~~~~~~g~~-~~~~~~~f~~a~~-~~P~IifIDEiD~l 256 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVEMFVGVG-ASRVRDMFEQAKK-AAPCIIFIDEIDAV 256 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHHhHHhhhccc-HHHHHHHHHHHHh-cCCcEEEehhHhhh
Confidence 558999999999999999883 33333 2222211 111 1223334444322 46789999999653
No 438
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.49 E-value=0.076 Score=42.14 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.1
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
.|+|+.|+|||||++.+...
T Consensus 3 ~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 3 VLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999983
No 439
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.48 E-value=0.47 Score=46.98 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|.|||||++.+..-
T Consensus 364 v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 364 VAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999863
No 440
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.47 E-value=0.42 Score=45.77 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=22.7
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 161 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 161 (297)
-|.|.+|+|||||+.++..+.. .+-...+|++..
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~E 117 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGE 117 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcc
Confidence 4779999999999988877422 112245566543
No 441
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=92.46 E-value=0.52 Score=38.28 Aligned_cols=21 Identities=29% Similarity=0.183 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||+|...+...
T Consensus 5 i~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 5 IIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 468899999999999988664
No 442
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=92.46 E-value=0.25 Score=40.42 Aligned_cols=53 Identities=28% Similarity=0.351 Sum_probs=37.2
Q ss_pred cccCCcchHHHHHHHhcccccccCCCceEEEE-----eCCCCCHHHHHHHHHHhhcCCCceEEEEEeC
Q 043781 128 RGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC-----VSDPFDEFRIAKAIIEGLEGSEKKFFLILDD 190 (297)
Q Consensus 128 ~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~-----vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDd 190 (297)
++..|+||||++..+.+ -|.. |-+ ++.. ....+.+.+++.+.. ...-.++.|-
T Consensus 5 IAtiGCGKTTva~aL~~------LFg~--wgHvQnDnI~~k-~~~~f~~~~l~~L~~-~~~~vViaDR 62 (168)
T PF08303_consen 5 IATIGCGKTTVALALSN------LFGE--WGHVQNDNITGK-RKPKFIKAVLELLAK-DTHPVVIADR 62 (168)
T ss_pred ecCCCcCHHHHHHHHHH------HcCC--CCccccCCCCCC-CHHHHHHHHHHHHhh-CCCCEEEEeC
Confidence 57789999999999888 3543 443 4444 678888888988843 2345555663
No 443
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.45 E-value=0.073 Score=45.22 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=19.9
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|++|+|||||+..+.++.
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCc
Confidence 35688999999999999998863
No 444
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.44 E-value=0.99 Score=44.11 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=32.2
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT 241 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~ 241 (297)
.+.=+++||.=-|. |.+.-.-|...|.. -+| .+||.|++..-...||..
T Consensus 170 ~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-----------~~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 170 EEPDLLLLDEPTNHLDLESIEWLEDYLKR-----------YPG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHh-----------CCC-cEEEEeCCHHHHHHHhhh
Confidence 77779999976654 11222225555554 355 799999988888888753
No 445
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.44 E-value=0.17 Score=47.79 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=30.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCC---CceEEEEeCC-CCCHHHHHHHHHHh
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENF---DKRIWVCVSD-PFDEFRIAKAIIEG 176 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F---~~~~wv~vs~-~~~~~~~~~~i~~~ 176 (297)
+-++|++|+|||+||+.+... +...| +..-+..... ..+...+++.++..
T Consensus 50 ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~ 103 (441)
T TIGR00390 50 ILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYVGRDVESMVRDLTDA 103 (441)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcccCCHHHHHHHHHHH
Confidence 458899999999999999983 44444 2222222111 22555665555444
No 446
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.41 E-value=0.08 Score=40.28 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|+|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999974
No 447
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=92.40 E-value=0.54 Score=46.61 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|.|||||++.+..-
T Consensus 364 ~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 364 VAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred EEEECCCCCCHHHHHHHHccC
Confidence 368999999999999999763
No 448
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.39 E-value=0.41 Score=46.87 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=43.2
Q ss_pred cccccCCcchHHHHHHHhcccc-cccCCCceEEEEeCCCCCHHHHHHHHH-Hhhc----C----------CCceEEEEEe
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKD-VIENFDKRIWVCVSDPFDEFRIAKAII-EGLE----G----------SEKKFFLILD 189 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~-~~~~----~----------~~kr~LiVlD 189 (297)
-|+|..|+|||++|+.+++... -...| +.|+.+.- .. ..+...+ -... + ....=.|+||
T Consensus 223 li~Ge~GtGK~~lA~~ih~~s~r~~~pf---v~i~c~~~-~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ld 297 (534)
T TIGR01817 223 LLRGESGTGKELIAKAIHYLSPRAKRPF---VKVNCAAL-SE-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLD 297 (534)
T ss_pred EEECCCCccHHHHHHHHHHhCCCCCCCe---EEeecCCC-CH-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEe
Confidence 4789999999999999998422 12223 33333322 11 2222221 1000 0 0223458899
Q ss_pred CCCCCCccCHHHHHHHHhh
Q 043781 190 DVWTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 190 dv~~~~~~~w~~l~~~l~~ 208 (297)
+|..-.......|...+..
T Consensus 298 ei~~L~~~~Q~~Ll~~l~~ 316 (534)
T TIGR01817 298 EIGEISPAFQAKLLRVLQE 316 (534)
T ss_pred chhhCCHHHHHHHHHHHhc
Confidence 9988765556666666643
No 449
>PRK13946 shikimate kinase; Provisional
Probab=92.38 E-value=0.078 Score=44.22 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|++|+||||+++.+.+.
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999983
No 450
>PRK06851 hypothetical protein; Provisional
Probab=92.38 E-value=2 Score=39.92 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=30.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 166 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 166 (297)
.-|-|.+|+|||||++.++... .++.++.-++-|.+.+-++
T Consensus 217 ~~i~G~pG~GKstl~~~i~~~a-~~~G~~v~~~hC~~dPdsl 257 (367)
T PRK06851 217 YFLKGRPGTGKSTMLKKIAKAA-EERGFDVEVYHCGFDPDSL 257 (367)
T ss_pred EEEeCCCCCcHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCc
Confidence 4567999999999999999852 3556777777776666443
No 451
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.35 E-value=0.29 Score=46.26 Aligned_cols=22 Identities=32% Similarity=0.140 Sum_probs=18.6
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...++|++|+||||++.++...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999888763
No 452
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=92.33 E-value=0.45 Score=43.56 Aligned_cols=79 Identities=18% Similarity=0.090 Sum_probs=42.5
Q ss_pred cccccCCcchHHHHHHHhcccc-cccCCCceEEEEeCCCCCHHHHHHHHHHhhc----C----------CCceEEEEEeC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKD-VIENFDKRIWVCVSDPFDEFRIAKAIIEGLE----G----------SEKKFFLILDD 190 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~----~----------~~kr~LiVlDd 190 (297)
-|+|-.|+||+++|+.++.... -...| +.|+.+.. +...+...++..-. + ....=.|+||+
T Consensus 33 lI~GE~GtGK~~lA~~iH~~s~r~~~pf---v~v~c~~~-~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~ 108 (326)
T PRK11608 33 LIIGERGTGKELIASRLHYLSSRWQGPF---ISLNCAAL-NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (326)
T ss_pred EEECCCCCcHHHHHHHHHHhCCccCCCe---EEEeCCCC-CHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCC
Confidence 4789999999999999986311 11222 33433332 22222222211000 0 01223478999
Q ss_pred CCCCCccCHHHHHHHHhh
Q 043781 191 VWTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 191 v~~~~~~~w~~l~~~l~~ 208 (297)
|..-.......|...+..
T Consensus 109 i~~L~~~~Q~~L~~~l~~ 126 (326)
T PRK11608 109 LATAPMLVQEKLLRVIEY 126 (326)
T ss_pred hhhCCHHHHHHHHHHHhc
Confidence 988765556666666644
No 453
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.21 Score=45.06 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=43.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEE----eCCCC-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC----VSDPF-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~----vs~~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
..|||++|.|||-||+.|+. .+.-.| +.+. ++... ...++.++++..... ...+.|.+|++..
T Consensus 169 ~ll~GppGtGKTlla~~Vaa--~mg~nf---l~v~ss~lv~kyiGEsaRlIRemf~yA~~-~~pciifmdeiDA 236 (388)
T KOG0651|consen 169 LLLYGPPGTGKTLLARAVAA--TMGVNF---LKVVSSALVDKYIGESARLIRDMFRYARE-VIPCIIFMDEIDA 236 (388)
T ss_pred eEEeCCCCCchhHHHHHHHH--hcCCce---EEeeHhhhhhhhcccHHHHHHHHHHHHhh-hCceEEeehhhhh
Confidence 36899999999999999998 455455 1222 12222 345677777766655 5679999999974
No 454
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=92.24 E-value=0.21 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.1
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+..-
T Consensus 33 ~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 33 IVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred EEEECCCCCcHHHHHHHHHCC
Confidence 468999999999999999984
No 455
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.20 E-value=0.095 Score=41.91 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhccc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
+.++|.+|+|||||+..+.+++
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 4588999999999999988753
No 456
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.19 E-value=0.58 Score=42.29 Aligned_cols=19 Identities=47% Similarity=0.392 Sum_probs=16.8
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
-|.|..|+||||+++.+.+
T Consensus 136 lI~G~tGSGKTTll~al~~ 154 (299)
T TIGR02782 136 LVVGGTGSGKTTLANALLA 154 (299)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3779999999999998876
No 457
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.17 E-value=0.084 Score=42.50 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.6
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-|+|.+|+||||||+.+...
T Consensus 3 ~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 46799999999999998874
No 458
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.16 E-value=2.8 Score=35.08 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHhccc
Q 043781 127 VRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~ 146 (297)
|.|+.|+||+||++.++.+.
T Consensus 9 lsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 9 LSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 66999999999999999953
No 459
>PRK04328 hypothetical protein; Provisional
Probab=92.14 E-value=0.23 Score=43.61 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=36.0
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC-----CceEEEEEeC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----EKKFFLILDD 190 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-----~kr~LiVlDd 190 (297)
-|.|.+|+|||+|+.++... ..++ -...+|++... +..++. ..+++++-. .+..|.++|-
T Consensus 27 li~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyis~ee--~~~~i~-~~~~~~g~d~~~~~~~~~l~iid~ 91 (249)
T PRK04328 27 LLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYVALEE--HPVQVR-RNMRQFGWDVRKYEEEGKFAIVDA 91 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEEEeeC--CHHHHH-HHHHHcCCCHHHHhhcCCEEEEec
Confidence 37799999999999776553 2222 34567887655 333433 344555543 3334666663
No 460
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.46 Score=48.82 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=47.4
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC------------CCHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP------------FDEFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~------------~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
+.|+.|+|||-||+.+.. .+-+..+.-+-+..|.- +--..-...+.+.+.. .--.+|.||||...
T Consensus 596 flGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~Lteavrr-rP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 596 FLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKR-RPYSVVLFEEIEKA 672 (898)
T ss_pred EECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhc-CCceEEEEechhhc
Confidence 449999999999988887 34333333333433320 1111222233333332 44567788999888
Q ss_pred CccCHHHHHHHHhhh
Q 043781 195 DYSKWEPFHNCLMRV 209 (297)
Q Consensus 195 ~~~~w~~l~~~l~~~ 209 (297)
+......+...+.++
T Consensus 673 h~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 673 HPDVLNILLQLLDRG 687 (898)
T ss_pred CHHHHHHHHHHHhcC
Confidence 766666677777665
No 461
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.083 Score=51.55 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=39.0
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-------CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-------DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
+||++|+|||-||+.|.| +..-+| ++|-.+- .-++..++++..... .-.++|.+|.+..
T Consensus 550 L~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGPELlNkYVGESErAVR~vFqRAR~-saPCVIFFDEiDa 615 (802)
T KOG0733|consen 550 LCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGPELLNKYVGESERAVRQVFQRARA-SAPCVIFFDEIDA 615 (802)
T ss_pred EeCCCCccHHHHHHHHhh--hccCce-----EeecCHHHHHHHhhhHHHHHHHHHHHhhc-CCCeEEEecchhh
Confidence 789999999999999999 455556 3322210 112333444443333 6899999999975
No 462
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.11 E-value=0.48 Score=46.14 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=51.0
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcC----C----------CceEEEEEeCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG----S----------EKKFFLILDDV 191 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~----~----------~kr~LiVlDdv 191 (297)
-|+|-.|+||+++|+.+++... ..-...+.|+.+.-.. ..+-..++-...+ . ...=.|+||+|
T Consensus 214 lI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI 290 (509)
T PRK05022 214 LILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEI 290 (509)
T ss_pred EEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecCh
Confidence 4789999999999999998422 1111234444333221 1111122211100 0 11223789999
Q ss_pred CCCCccCHHHHHHHHhhhhhhhceeeec-----CCCCeEEEEecc
Q 043781 192 WTDDYSKWEPFHNCLMRVLQEFAAIEVD-----GDENPLSLTSTC 231 (297)
Q Consensus 192 ~~~~~~~w~~l~~~l~~~~~~~~~~~~~-----~~gs~iiiTTr~ 231 (297)
..-..+....|...+... .....+ ....|||.||..
T Consensus 291 ~~L~~~~Q~~Ll~~l~~~----~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 291 GELPLALQAKLLRVLQYG----EIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred hhCCHHHHHHHHHHHhcC----CEeeCCCCcceecceEEEEecCC
Confidence 887655555666655432 001111 124588888853
No 463
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.24 Score=44.44 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=40.2
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-------CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-------DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
++|++|.||+.||+.|.-. ....| ++||..- .-+.+.+++++-... +|..+|.+|.|..
T Consensus 171 LyGPPGTGKSYLAKAVATE--AnSTF-----FSvSSSDLvSKWmGESEkLVknLFemARe-~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 171 LYGPPGTGKSYLAKAVATE--ANSTF-----FSVSSSDLVSKWMGESEKLVKNLFEMARE-NKPSIIFIDEIDS 236 (439)
T ss_pred EeCCCCCcHHHHHHHHHhh--cCCce-----EEeehHHHHHHHhccHHHHHHHHHHHHHh-cCCcEEEeehhhh
Confidence 6799999999999999983 33333 3343321 123455555544443 8999999999974
No 464
>PRK02496 adk adenylate kinase; Provisional
Probab=92.04 E-value=0.087 Score=43.78 Aligned_cols=20 Identities=30% Similarity=0.144 Sum_probs=17.5
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
.-|+|++|+||||+|+.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999876
No 465
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.03 E-value=0.084 Score=44.56 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|++|+||||||+.+...
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999873
No 466
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=92.03 E-value=0.44 Score=49.60 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=43.7
Q ss_pred CceEEEEEeCCCCC-C----ccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCCCccccCCccc
Q 043781 181 EKKFFLILDDVWTD-D----YSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGLRAKFPVSIFD 254 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~----~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~~~~~~l~~l~ 254 (297)
+..-+|.||.--.. | ...|+-+..... +|..||+||+..+-++.+|.++++...-.|..+.
T Consensus 715 g~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-------------~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciG 780 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKARRHLWDIIARLRK-------------NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIG 780 (885)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-------------cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEec
Confidence 88899999995442 2 246777766553 3338999999999999999988776444555543
No 467
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.02 E-value=1.3 Score=38.94 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=29.1
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIE 175 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 175 (297)
-|.|.+|+||||++.++..+. ...+=..++|++... +..++...+..
T Consensus 34 ~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~ 80 (271)
T cd01122 34 ILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLG 80 (271)
T ss_pred EEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHH
Confidence 467999999999998877642 222123566776544 33444444433
No 468
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.01 E-value=0.084 Score=45.68 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=19.7
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..++|.|..|+|||||++.+..-
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999988873
No 469
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=92.00 E-value=0.33 Score=46.12 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||++.+...
T Consensus 160 ~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 160 LGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred EEEECCCCCCHHHHHHHHhhc
Confidence 368899999999999999864
No 470
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.00 E-value=0.39 Score=49.02 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.2
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|.|.+|.||||+++.+..
T Consensus 370 ~~il~G~aGTGKTtll~~i~~ 390 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAARE 390 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 346889999999999999876
No 471
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=91.98 E-value=0.31 Score=46.87 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=32.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIE 175 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~ 175 (297)
.+|+|-.|+|||+|+..+..+. .+.+=+..+++-+...- .+.++...++.
T Consensus 164 ~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv~V~~lIGERgrEv~efi~~~~~ 214 (494)
T CHL00060 164 IGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 214 (494)
T ss_pred EeeecCCCCChhHHHHHHHHHH-HHhcCCeEEEEEeccCchHHHHHHHHHHh
Confidence 3689999999999998777641 11112566676665543 34556665555
No 472
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.98 E-value=0.09 Score=41.17 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||.+.+...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 3478999999999999999983
No 473
>PRK14531 adenylate kinase; Provisional
Probab=91.97 E-value=0.09 Score=43.80 Aligned_cols=21 Identities=29% Similarity=0.105 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-++|++|+||||+++.+...
T Consensus 5 i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999874
No 474
>PRK06904 replicative DNA helicase; Validated
Probab=91.97 E-value=2.2 Score=41.23 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=31.8
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE 178 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~ 178 (297)
|-|.+|+|||++|..+..+...+... .++++ |-..+..++...++.+..
T Consensus 226 IaarPg~GKTafalnia~~~a~~~g~-~Vl~f--SlEMs~~ql~~Rlla~~s 274 (472)
T PRK06904 226 VAARPSMGKTTFAMNLCENAAMASEK-PVLVF--SLEMPAEQIMMRMLASLS 274 (472)
T ss_pred EEeCCCCChHHHHHHHHHHHHHhcCC-eEEEE--eccCCHHHHHHHHHHhhC
Confidence 44899999999998777653222222 34444 445677777777776654
No 475
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=91.93 E-value=0.23 Score=46.45 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+..-
T Consensus 48 ~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 48 FALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 468899999999999999974
No 476
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.91 E-value=1.4 Score=38.41 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.9
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
+..+|+|..|.|||||.+.+..
T Consensus 54 e~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3468999999999999999998
No 477
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.83 E-value=0.15 Score=42.09 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=16.2
Q ss_pred ccccCCcchHHHHHHHhcc
Q 043781 127 VRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~ 145 (297)
|.|.+|+|||+|+..+...
T Consensus 4 i~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 4 LSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 6799999999999877653
No 478
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.83 E-value=0.3 Score=47.64 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=31.5
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLT 239 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~ 239 (297)
.+.-|+|||.=-|. |.+..+.|...|.. -.+.||+.|++......++
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~------------f~Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLD------------FEGTVLLVSHDRYFLDRVA 503 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHh------------CCCeEEEEeCCHHHHHhhc
Confidence 88899999987665 33445556666654 3355888888666555554
No 479
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.81 E-value=0.61 Score=42.76 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=42.3
Q ss_pred cccccCCcchHHHHHHHhcccc-cccCCCceEEEEeCCCCCHHHHHHH-HHHhh----cC----------CCceEEEEEe
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKD-VIENFDKRIWVCVSDPFDEFRIAKA-IIEGL----EG----------SEKKFFLILD 189 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~-i~~~~----~~----------~~kr~LiVlD 189 (297)
-|+|-.|+||+++|+.+++... -...| +-|+.+.. . ...+.. ++-.. .+ ....=.|+||
T Consensus 26 LI~GE~GtGK~~lAr~iH~~s~r~~~pf---v~vnc~~~-~-~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ld 100 (329)
T TIGR02974 26 LIIGERGTGKELIAARLHYLSKRWQGPL---VKLNCAAL-S-ENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLD 100 (329)
T ss_pred EEECCCCChHHHHHHHHHHhcCccCCCe---EEEeCCCC-C-hHHHHHHHhccccccccCcccccCCchhhCCCCEEEeC
Confidence 4789999999999999987422 12233 33333321 1 122222 21100 00 0234458999
Q ss_pred CCCCCCccCHHHHHHHHhh
Q 043781 190 DVWTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 190 dv~~~~~~~w~~l~~~l~~ 208 (297)
+|.....+....|...+..
T Consensus 101 ei~~L~~~~Q~~Ll~~l~~ 119 (329)
T TIGR02974 101 ELATASLLVQEKLLRVIEY 119 (329)
T ss_pred ChHhCCHHHHHHHHHHHHc
Confidence 9987754455556555543
No 480
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.81 E-value=0.094 Score=43.17 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=16.9
Q ss_pred ccccccCCcchHHHHHHHh
Q 043781 125 SDVRGMGGIGKTTLAQFAY 143 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~ 143 (297)
+.|.|.||+||||+++.+.
T Consensus 3 I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEeCCCCCchHHHHHHHH
Confidence 4578999999999999887
No 481
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=91.81 E-value=0.11 Score=40.18 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.1
Q ss_pred ccccCCcchHHHHHHHhcccc
Q 043781 127 VRGMGGIGKTTLAQFAYNDKD 147 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~ 147 (297)
|+|.+|+|||||++.+.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~ 21 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF 21 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc
Confidence 589999999999999987543
No 482
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.81 E-value=0.16 Score=43.30 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||++.+..-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999884
No 483
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.81 E-value=0.16 Score=43.34 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||++.+..-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3578999999999999999874
No 484
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.79 E-value=0.16 Score=43.13 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||++.+..-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999874
No 485
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.78 E-value=0.27 Score=45.89 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=22.7
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEe
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV 160 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v 160 (297)
-|.|.+|+|||||+.++... ....-...+|++.
T Consensus 86 LI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~ 118 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSG 118 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEC
Confidence 46799999999999888763 2222234556654
No 486
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=91.76 E-value=0.26 Score=42.15 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=30.1
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 174 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 174 (297)
|=|+.|+||||+++.++. ..+.+.-.++|..-+....+.+..++++
T Consensus 8 iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 8 IEGIDGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred EECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHHHH
Confidence 349999999999999999 4555443555554444444455555544
No 487
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.76 E-value=0.45 Score=44.96 Aligned_cols=72 Identities=17% Similarity=0.077 Sum_probs=44.3
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC-CceEEEEEeCCCCCCccCHHHHHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-EKKFFLILDDVWTDDYSKWEPFHNC 205 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-~kr~LiVlDdv~~~~~~~w~~l~~~ 205 (297)
++|+.|+|||+||..+.....+... ...++..++.++....-+. .+-=|||||++-....+.-+++...
T Consensus 214 ~lGp~GTGKThla~~l~~~~a~~sG----------~f~T~a~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~~~~~~~v~i 283 (449)
T TIGR02688 214 ELGPKGTGKSYIYNNLSPYVILISG----------GTITVAKLFYNISTRQIGLVGRWDVVAFDEVATLKFAKPKELIGI 283 (449)
T ss_pred EECCCCCCHHHHHHHHhHHHHHHcC----------CcCcHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcCCchHHHHHH
Confidence 4599999999999987764112111 2346666666665533222 6778999999988422333344444
Q ss_pred Hhh
Q 043781 206 LMR 208 (297)
Q Consensus 206 l~~ 208 (297)
+++
T Consensus 284 mK~ 286 (449)
T TIGR02688 284 LKN 286 (449)
T ss_pred HHH
Confidence 443
No 488
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.74 E-value=0.095 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.9
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
-.++|-|.+|+||||+|+.++..
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 34678899999999999999983
No 489
>PF13245 AAA_19: Part of AAA domain
Probab=91.70 E-value=0.21 Score=35.32 Aligned_cols=18 Identities=50% Similarity=0.541 Sum_probs=13.3
Q ss_pred ccccCCcchH-HHHHHHhc
Q 043781 127 VRGMGGIGKT-TLAQFAYN 144 (297)
Q Consensus 127 i~G~~G~GKT-tLa~~v~~ 144 (297)
|.|.+|.||| |++..+.+
T Consensus 15 v~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 15 VQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999 45555554
No 490
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.70 E-value=0.11 Score=41.67 Aligned_cols=22 Identities=41% Similarity=0.415 Sum_probs=19.2
Q ss_pred ccccccCCcchHHHHHHHhccc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
+-++|..|+|||||++.+...+
T Consensus 4 imliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 4578999999999999998864
No 491
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.68 E-value=0.75 Score=37.91 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=17.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-|.|.+|+||||+|..+...
T Consensus 4 ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 357899999999999988763
No 492
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.65 E-value=0.095 Score=47.12 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.5
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
-.++|.|..|+||||||+.+..
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987644
No 493
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=91.65 E-value=0.28 Score=45.81 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=31.8
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTL 240 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~ 240 (297)
.+.=+++||+--.. |...-+.+...+..... ..|..+|++|++.+.+..++.
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~--------~~g~tiI~vTHd~~ea~~laD 213 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQR--------KLGITFVFVTHDQEEALTMSD 213 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCC
Confidence 66779999987654 32233445555554321 346788888887765555543
No 494
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.63 E-value=1.4 Score=39.94 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=40.6
Q ss_pred ccccccCCcchHHHHHHHhccc----c---cc---c-CCCceEEEEe--C------CCCCHHHHHHHHHHhhcCCCceEE
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDK----D---VI---E-NFDKRIWVCV--S------DPFDEFRIAKAIIEGLEGSEKKFF 185 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~----~---~~---~-~F~~~~wv~v--s------~~~~~~~~~~~i~~~~~~~~kr~L 185 (297)
..|.|..|+|||||++.+.... + +. + .+...-|+.+ . ...+..+++...+.+ ..=.
T Consensus 147 ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~-----~pd~ 221 (308)
T TIGR02788 147 IIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRM-----RPDR 221 (308)
T ss_pred EEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcC-----CCCe
Confidence 4578999999999999887631 1 00 1 1111122211 1 124556666555543 4556
Q ss_pred EEEeCCCCCCccCHHHH
Q 043781 186 LILDDVWTDDYSKWEPF 202 (297)
Q Consensus 186 iVlDdv~~~~~~~w~~l 202 (297)
|++|.+... +.|+.+
T Consensus 222 ii~gE~r~~--e~~~~l 236 (308)
T TIGR02788 222 IILGELRGD--EAFDFI 236 (308)
T ss_pred EEEeccCCH--HHHHHH
Confidence 899999875 445433
No 495
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.60 E-value=0.82 Score=44.26 Aligned_cols=19 Identities=32% Similarity=0.309 Sum_probs=15.9
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
-|.|.+|+||||||.++..
T Consensus 25 Li~G~pGsGKT~la~qfl~ 43 (484)
T TIGR02655 25 LVSGTSGTGKTLFSIQFLY 43 (484)
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 3779999999999987643
No 496
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.60 E-value=0.18 Score=42.12 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|.|||||.+.+...
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999983
No 497
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.59 E-value=0.45 Score=40.84 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=47.4
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC-----CceEEEEEeCCCCCC---cc
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----EKKFFLILDDVWTDD---YS 197 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~-----~kr~LiVlDdv~~~~---~~ 197 (297)
-|.|.+|+|||+|+.++... ..++.=+..+|++...+ ..++.+.+ ++++-. ..-.|.++|-..... ..
T Consensus 23 li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~--~~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~ 98 (226)
T PF06745_consen 23 LISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEP--PEELIENM-KSFGWDLEEYEDSGKLKIIDAFPERIGWSPN 98 (226)
T ss_dssp EEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGGST-TSC
T ss_pred EEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCC--HHHHHHHH-HHcCCcHHHHhhcCCEEEEeccccccccccc
Confidence 47799999999999765542 22221134567765443 34444443 345443 222366777665531 13
Q ss_pred CHHHHHHHHhhhhhhhceeeecCCCCeEEEEe
Q 043781 198 KWEPFHNCLMRVLQEFAAIEVDGDENPLSLTS 229 (297)
Q Consensus 198 ~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTT 229 (297)
.++.+...+...... .+..+++|-+
T Consensus 99 ~~~~l~~~i~~~i~~-------~~~~~vVIDs 123 (226)
T PF06745_consen 99 DLEELLSKIREAIEE-------LKPDRVVIDS 123 (226)
T ss_dssp CHHHHHHHHHHHHHH-------HTSSEEEEET
T ss_pred CHHHHHHHHHHHHHh-------cCCCEEEEEC
Confidence 455554444433221 2236777755
No 498
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.59 E-value=0.086 Score=42.87 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=16.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|.+|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 458899999999999999974
No 499
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=91.58 E-value=0.1 Score=44.42 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=17.6
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-|+|++|+||||+|+.+...
T Consensus 3 ~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 3 VLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 47899999999999998863
No 500
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=91.56 E-value=0.79 Score=44.56 Aligned_cols=54 Identities=15% Similarity=0.035 Sum_probs=37.1
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhh
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTL 242 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~ 242 (297)
.+.-|||+|.=-.. |...-.+|...+.+.. ...|..+|++|++.++...+|...
T Consensus 171 ~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~--------~e~g~a~l~ITHDl~Vva~~aDrv 225 (539)
T COG1123 171 LKPKLLIADEPTTALDVTTQAQILDLLKDLQ--------RELGMAVLFITHDLGVVAELADRV 225 (539)
T ss_pred CCCCEEEECCCccccCHHHHHHHHHHHHHHH--------HHcCcEEEEEcCCHHHHHHhcCeE
Confidence 77889999976543 2223334555555432 167888999999999988888653
Done!