Query 043781
Match_columns 297
No_of_seqs 208 out of 1896
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.3E-22 4.3E-27 196.4 7.9 123 122-266 152-309 (549)
2 1vt4_I APAF-1 related killer D 99.7 2.7E-18 9.3E-23 172.9 3.5 97 123-238 151-281 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.6 1E-16 3.6E-21 167.2 5.0 119 123-264 148-300 (1249)
4 3qfl_A MLA10; coiled-coil, (CC 99.5 5.5E-14 1.9E-18 107.8 8.7 65 2-66 18-84 (115)
5 1z6t_A APAF-1, apoptotic prote 99.5 7.5E-15 2.6E-19 142.7 3.2 119 123-265 148-301 (591)
6 1w5s_A Origin recognition comp 98.7 1.3E-08 4.3E-13 93.9 6.9 68 127-194 57-150 (412)
7 2chg_A Replication factor C sm 98.6 1.1E-07 3.7E-12 79.4 9.0 119 125-257 41-165 (226)
8 1njg_A DNA polymerase III subu 98.6 9.3E-08 3.2E-12 80.7 7.8 119 125-257 48-189 (250)
9 2v1u_A Cell division control p 98.3 9.2E-07 3.1E-11 80.4 7.8 125 125-257 47-205 (387)
10 2qby_B CDC6 homolog 3, cell di 98.3 3.2E-07 1.1E-11 83.7 4.6 119 125-257 48-201 (384)
11 1sxj_B Activator 1 37 kDa subu 98.2 9.4E-07 3.2E-11 78.5 5.4 118 125-258 45-171 (323)
12 1fnn_A CDC6P, cell division co 98.2 3E-06 1E-10 77.2 8.4 124 125-257 47-197 (389)
13 2qen_A Walker-type ATPase; unk 98.2 2.8E-06 9.7E-11 76.0 7.3 31 124-161 33-63 (350)
14 1jbk_A CLPB protein; beta barr 98.2 5.4E-06 1.9E-10 67.2 8.3 70 125-194 46-127 (195)
15 2qby_A CDC6 homolog 1, cell di 98.2 4.6E-07 1.6E-11 82.3 1.6 122 124-257 47-201 (386)
16 1iqp_A RFCS; clamp loader, ext 98.1 2E-06 6.9E-11 76.4 4.8 119 125-258 49-174 (327)
17 2fna_A Conserved hypothetical 98.1 1.8E-05 6E-10 70.9 10.6 33 124-161 32-64 (357)
18 2z4s_A Chromosomal replication 98.1 6.2E-06 2.1E-10 77.2 7.8 116 125-257 133-267 (440)
19 3ec2_A DNA replication protein 98.1 3.6E-06 1.2E-10 68.7 5.3 91 125-231 41-142 (180)
20 2w58_A DNAI, primosome compone 98.0 4.3E-06 1.5E-10 69.4 5.3 90 125-231 57-158 (202)
21 3bos_A Putative DNA replicatio 97.9 5.3E-06 1.8E-10 70.1 4.1 89 125-230 55-146 (242)
22 1l8q_A Chromosomal replication 97.9 8.6E-06 2.9E-10 72.8 5.2 115 125-257 40-170 (324)
23 2p65_A Hypothetical protein PF 97.8 3.5E-05 1.2E-09 62.2 6.6 67 126-194 47-127 (187)
24 1jr3_A DNA polymerase III subu 97.7 6.9E-05 2.4E-09 67.8 7.3 119 126-258 42-183 (373)
25 3n70_A Transport activator; si 97.7 8.2E-05 2.8E-09 58.5 6.7 86 126-230 28-114 (145)
26 3pvs_A Replication-associated 97.7 4.3E-05 1.5E-09 71.6 5.8 76 125-207 53-131 (447)
27 3te6_A Regulatory protein SIR3 97.7 0.00017 5.7E-09 64.5 9.4 121 126-259 49-204 (318)
28 2gno_A DNA polymerase III, gam 97.7 4.7E-05 1.6E-09 67.8 5.8 119 127-261 23-147 (305)
29 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.00022 7.5E-09 63.8 9.5 64 125-194 48-117 (322)
30 3co5_A Putative two-component 97.6 7.1E-05 2.4E-09 58.7 4.8 85 125-230 30-114 (143)
31 2chq_A Replication factor C sm 97.5 2.7E-05 9.1E-10 68.8 2.3 120 125-258 41-166 (319)
32 1a5t_A Delta prime, HOLB; zinc 97.5 0.00021 7.2E-09 64.2 8.1 120 127-261 29-175 (334)
33 3eie_A Vacuolar protein sortin 97.5 0.00011 3.9E-09 65.6 6.1 64 125-194 54-122 (322)
34 2kjq_A DNAA-related protein; s 97.5 9.9E-05 3.4E-09 58.5 4.9 85 124-230 38-123 (149)
35 3h4m_A Proteasome-activating n 97.5 7.1E-05 2.4E-09 65.3 4.3 63 125-193 54-121 (285)
36 1sxj_D Activator 1 41 kDa subu 97.5 0.00013 4.3E-09 65.5 5.8 121 125-258 61-197 (353)
37 1hqc_A RUVB; extended AAA-ATPa 97.4 0.00018 6.3E-09 63.7 6.2 76 125-208 41-116 (324)
38 3u61_B DNA polymerase accessor 97.4 0.00045 1.6E-08 61.4 8.7 112 127-257 53-169 (324)
39 2qgz_A Helicase loader, putati 97.4 0.00012 4E-09 65.2 4.5 67 125-199 155-231 (308)
40 1sxj_E Activator 1 40 kDa subu 97.4 0.00026 9E-09 63.6 6.8 64 182-258 134-198 (354)
41 4b4t_J 26S protease regulatory 97.3 0.00075 2.6E-08 62.1 9.3 62 127-194 187-253 (405)
42 3uk6_A RUVB-like 2; hexameric 97.3 0.00014 4.8E-09 65.8 4.3 21 125-145 73-93 (368)
43 2zan_A Vacuolar protein sortin 97.3 0.00096 3.3E-08 62.3 9.4 21 125-145 170-190 (444)
44 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00099 3.4E-08 57.0 8.4 64 125-194 42-110 (262)
45 3syl_A Protein CBBX; photosynt 97.2 0.00057 2E-08 60.1 7.0 93 125-231 70-178 (309)
46 2qp9_X Vacuolar protein sortin 97.2 0.00026 8.7E-09 64.2 4.7 64 125-194 87-155 (355)
47 1d2n_A N-ethylmaleimide-sensit 97.2 0.00044 1.5E-08 59.9 6.0 63 125-193 67-135 (272)
48 1sxj_C Activator 1 40 kDa subu 97.2 0.00044 1.5E-08 62.1 6.1 94 125-231 49-149 (340)
49 3d8b_A Fidgetin-like protein 1 97.2 0.00047 1.6E-08 62.5 6.3 63 125-193 120-187 (357)
50 3b9p_A CG5977-PA, isoform A; A 97.2 0.0014 4.9E-08 57.2 9.2 64 125-194 57-125 (297)
51 1ofh_A ATP-dependent HSL prote 97.2 0.00055 1.9E-08 60.0 6.3 67 126-197 54-131 (310)
52 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00056 1.9E-08 61.0 6.2 61 126-194 127-194 (331)
53 3vfd_A Spastin; ATPase, microt 97.0 0.00083 2.8E-08 61.5 6.4 64 125-194 151-219 (389)
54 4fcw_A Chaperone protein CLPB; 97.0 0.00087 3E-08 58.9 6.3 81 125-208 50-145 (311)
55 3pfi_A Holliday junction ATP-d 96.9 0.0018 6.1E-08 57.8 7.1 75 125-208 58-132 (338)
56 1sxj_A Activator 1 95 kDa subu 96.9 0.0016 5.6E-08 61.9 7.2 65 124-194 79-160 (516)
57 4b4t_L 26S protease subunit RP 96.9 0.0017 5.8E-08 60.4 6.9 61 127-193 220-285 (437)
58 2bjv_A PSP operon transcriptio 96.9 0.0028 9.5E-08 54.5 7.8 80 125-207 32-125 (265)
59 4b4t_H 26S protease regulatory 96.8 0.0032 1.1E-07 58.7 8.3 61 127-193 248-313 (467)
60 1tue_A Replication protein E1; 96.8 0.00021 7E-09 59.7 0.2 87 126-230 62-155 (212)
61 1qvr_A CLPB protein; coiled co 96.7 0.0035 1.2E-07 63.3 8.3 69 126-194 195-275 (854)
62 1n0w_A DNA repair protein RAD5 96.7 0.0097 3.3E-07 50.0 9.9 41 125-165 27-71 (243)
63 3hu3_A Transitional endoplasmi 96.6 0.00075 2.6E-08 63.9 2.6 62 125-192 241-307 (489)
64 3t15_A Ribulose bisphosphate c 96.6 0.001 3.6E-08 58.5 3.2 63 126-193 40-110 (293)
65 2ce7_A Cell division protein F 96.4 0.0056 1.9E-07 57.6 7.2 64 125-194 52-120 (476)
66 2cvh_A DNA repair and recombin 96.4 0.014 4.9E-07 48.1 8.9 38 125-167 23-60 (220)
67 1lv7_A FTSH; alpha/beta domain 96.3 0.003 1E-07 54.0 4.4 63 125-193 48-115 (257)
68 3cf0_A Transitional endoplasmi 96.3 0.0027 9.2E-08 56.0 4.1 21 125-145 52-72 (301)
69 4b4t_K 26S protease regulatory 96.2 0.0044 1.5E-07 57.5 5.1 60 127-192 211-275 (428)
70 2r44_A Uncharacterized protein 96.2 0.0029 1E-07 56.2 3.9 79 125-208 49-135 (331)
71 4b4t_M 26S protease regulatory 96.2 0.0033 1.1E-07 58.5 4.1 61 127-193 220-285 (434)
72 1g8p_A Magnesium-chelatase 38 96.1 0.008 2.7E-07 53.5 6.2 21 125-145 48-68 (350)
73 3lda_A DNA repair protein RAD5 96.0 0.03 1E-06 51.4 9.8 43 125-167 181-227 (400)
74 2x8a_A Nuclear valosin-contain 96.0 0.012 4E-07 51.2 6.5 63 125-193 47-114 (274)
75 3pxi_A Negative regulator of g 95.9 0.002 6.7E-08 64.3 1.5 100 125-230 524-628 (758)
76 1ojl_A Transcriptional regulat 95.9 0.011 3.8E-07 52.2 6.2 20 126-145 29-48 (304)
77 4b4t_I 26S protease regulatory 95.9 0.0056 1.9E-07 56.6 4.4 61 127-193 221-286 (437)
78 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.017 5.8E-07 47.9 6.9 20 125-144 26-45 (235)
79 3e70_C DPA, signal recognition 95.8 0.037 1.3E-06 49.4 9.2 23 123-145 130-152 (328)
80 1um8_A ATP-dependent CLP prote 95.7 0.0077 2.6E-07 54.6 4.1 66 125-195 75-150 (376)
81 4g1u_C Hemin import ATP-bindin 95.6 0.058 2E-06 46.6 9.3 20 125-144 40-59 (266)
82 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.013 4.5E-07 55.4 5.5 78 125-207 44-134 (500)
83 1r6b_X CLPA protein; AAA+, N-t 95.5 0.045 1.6E-06 54.3 9.4 68 126-194 211-290 (758)
84 1qvr_A CLPB protein; coiled co 95.5 0.014 4.9E-07 58.9 5.6 82 124-208 590-686 (854)
85 3cf2_A TER ATPase, transitiona 95.5 0.021 7.1E-07 57.1 6.6 61 127-193 243-308 (806)
86 3cf2_A TER ATPase, transitiona 95.4 0.0079 2.7E-07 60.1 3.5 59 127-193 516-581 (806)
87 1sky_E F1-ATPase, F1-ATP synth 95.4 0.013 4.6E-07 54.8 4.7 67 126-193 155-256 (473)
88 3hr8_A Protein RECA; alpha and 95.4 0.054 1.9E-06 48.9 8.6 36 125-162 64-99 (356)
89 1xp8_A RECA protein, recombina 95.2 0.082 2.8E-06 47.9 9.4 67 125-194 77-164 (366)
90 2ck3_D ATP synthase subunit be 95.2 0.037 1.3E-06 51.8 6.9 50 126-176 157-207 (482)
91 1jr3_D DNA polymerase III, del 95.1 0.049 1.7E-06 48.5 7.5 122 126-259 22-148 (343)
92 1fx0_B ATP synthase beta chain 95.1 0.049 1.7E-06 51.1 7.7 50 126-176 169-219 (498)
93 2c9o_A RUVB-like 1; hexameric 95.1 0.021 7.1E-07 53.3 5.2 65 126-193 67-137 (456)
94 3lw7_A Adenylate kinase relate 95.0 0.0081 2.8E-07 47.4 1.8 18 125-142 4-21 (179)
95 2pt7_A CAG-ALFA; ATPase, prote 94.9 0.074 2.5E-06 47.5 7.9 20 126-145 175-194 (330)
96 2orw_A Thymidine kinase; TMTK, 94.8 0.02 6.9E-07 46.6 3.7 19 126-144 7-25 (184)
97 1qhx_A CPT, protein (chloramph 94.8 0.01 3.5E-07 47.4 1.9 20 125-144 6-25 (178)
98 1r6b_X CLPA protein; AAA+, N-t 94.7 0.056 1.9E-06 53.7 7.4 75 125-208 491-583 (758)
99 1zp6_A Hypothetical protein AT 94.7 0.011 3.7E-07 47.9 1.9 21 125-145 12-32 (191)
100 1kag_A SKI, shikimate kinase I 94.7 0.011 3.8E-07 47.0 1.8 22 124-145 6-27 (173)
101 3kb2_A SPBC2 prophage-derived 94.7 0.012 4E-07 46.6 1.9 21 125-145 4-24 (173)
102 3kl4_A SRP54, signal recogniti 94.6 0.11 3.8E-06 48.1 8.6 22 123-144 98-119 (433)
103 3vr4_D V-type sodium ATPase su 94.6 0.037 1.3E-06 51.5 5.3 69 125-193 154-259 (465)
104 2dhr_A FTSH; AAA+ protein, hex 94.6 0.029 1E-06 53.0 4.7 63 125-193 67-134 (499)
105 2qe7_A ATP synthase subunit al 94.6 0.037 1.3E-06 52.0 5.3 64 126-193 166-265 (502)
106 3ice_A Transcription terminati 94.6 0.035 1.2E-06 50.7 4.9 20 125-144 177-196 (422)
107 1ly1_A Polynucleotide kinase; 94.5 0.013 4.4E-07 46.7 1.9 20 125-144 5-24 (181)
108 1u94_A RECA protein, recombina 94.5 0.034 1.2E-06 50.3 4.8 39 125-165 66-104 (356)
109 3vaa_A Shikimate kinase, SK; s 94.4 0.015 5E-07 47.7 1.9 21 124-144 27-47 (199)
110 2c61_A A-type ATP synthase non 94.3 0.031 1.1E-06 52.2 4.2 50 126-175 156-208 (469)
111 2r9v_A ATP synthase subunit al 94.3 0.033 1.1E-06 52.5 4.4 64 126-193 179-278 (515)
112 2zr9_A Protein RECA, recombina 94.3 0.061 2.1E-06 48.4 6.0 67 125-194 64-151 (349)
113 3gqb_B V-type ATP synthase bet 94.3 0.03 1E-06 52.1 4.0 24 125-148 150-173 (464)
114 3trf_A Shikimate kinase, SK; a 94.3 0.016 5.3E-07 46.7 1.9 20 125-144 8-27 (185)
115 1u0j_A DNA replication protein 94.2 0.035 1.2E-06 48.1 4.0 21 125-145 107-127 (267)
116 1fx0_A ATP synthase alpha chai 94.2 0.033 1.1E-06 52.4 4.2 64 126-193 167-266 (507)
117 3k1j_A LON protease, ATP-depen 94.2 0.14 4.9E-06 49.4 8.8 25 185-209 204-228 (604)
118 3jvv_A Twitching mobility prot 94.1 0.046 1.6E-06 49.4 4.8 91 125-235 126-234 (356)
119 2jaq_A Deoxyguanosine kinase; 94.1 0.017 5.8E-07 47.0 1.8 21 125-145 3-23 (205)
120 3tui_C Methionine import ATP-b 94.1 0.26 9E-06 44.5 9.7 52 181-240 180-232 (366)
121 1nks_A Adenylate kinase; therm 94.1 0.018 6.1E-07 46.4 1.8 21 125-145 4-24 (194)
122 1zuh_A Shikimate kinase; alpha 94.1 0.018 6.3E-07 45.6 1.8 23 122-144 7-29 (168)
123 3tr0_A Guanylate kinase, GMP k 94.0 0.018 6.3E-07 47.0 1.8 22 124-145 9-30 (205)
124 1ye8_A Protein THEP1, hypothet 94.0 0.019 6.5E-07 46.5 1.8 21 125-145 3-23 (178)
125 3l0o_A Transcription terminati 94.0 0.072 2.4E-06 48.7 5.7 20 126-145 179-198 (427)
126 1kht_A Adenylate kinase; phosp 94.0 0.019 6.6E-07 46.1 1.9 20 125-144 6-25 (192)
127 1kgd_A CASK, peripheral plasma 94.0 0.019 6.5E-07 46.3 1.8 22 124-145 7-28 (180)
128 3c8u_A Fructokinase; YP_612366 94.0 0.019 6.6E-07 47.4 1.9 23 123-145 23-45 (208)
129 1knq_A Gluconate kinase; ALFA/ 94.0 0.019 6.6E-07 45.7 1.8 21 124-144 10-30 (175)
130 1in4_A RUVB, holliday junction 94.0 0.019 6.5E-07 51.3 1.9 72 124-204 53-124 (334)
131 3io5_A Recombination and repai 93.9 0.13 4.3E-06 45.8 7.0 68 125-194 31-123 (333)
132 1via_A Shikimate kinase; struc 93.9 0.021 7.1E-07 45.6 1.9 22 124-145 6-27 (175)
133 1ypw_A Transitional endoplasmi 93.9 0.027 9.4E-07 56.4 3.0 63 125-193 241-308 (806)
134 2rhm_A Putative kinase; P-loop 93.9 0.021 7.1E-07 46.1 1.8 20 125-144 8-27 (193)
135 2j41_A Guanylate kinase; GMP, 93.9 0.02 7E-07 46.7 1.8 22 124-145 8-29 (207)
136 4eun_A Thermoresistant glucoki 93.8 0.021 7.2E-07 46.8 1.8 21 124-144 31-51 (200)
137 2if2_A Dephospho-COA kinase; a 93.8 0.021 7.1E-07 46.7 1.7 21 124-144 3-23 (204)
138 1cke_A CK, MSSA, protein (cyti 93.8 0.021 7.3E-07 47.4 1.8 21 124-144 7-27 (227)
139 3cm0_A Adenylate kinase; ATP-b 93.7 0.022 7.7E-07 45.7 1.8 20 125-144 7-26 (186)
140 3iij_A Coilin-interacting nucl 93.7 0.023 7.9E-07 45.5 1.9 21 125-145 14-34 (180)
141 3t61_A Gluconokinase; PSI-biol 93.7 0.023 7.9E-07 46.5 1.9 23 123-145 19-41 (202)
142 2r62_A Cell division protease 93.7 0.024 8.3E-07 48.5 2.0 21 125-145 47-67 (268)
143 1ixz_A ATP-dependent metallopr 93.7 0.023 8E-07 48.3 1.9 62 125-192 52-118 (254)
144 1ukz_A Uridylate kinase; trans 93.7 0.03 1E-06 45.7 2.4 22 123-144 16-37 (203)
145 2bdt_A BH3686; alpha-beta prot 93.6 0.025 8.5E-07 45.7 1.9 20 125-144 5-24 (189)
146 1jjv_A Dephospho-COA kinase; P 93.6 0.025 8.6E-07 46.4 1.9 21 124-144 4-24 (206)
147 4gp7_A Metallophosphoesterase; 93.6 0.023 7.9E-07 45.5 1.6 20 124-143 11-30 (171)
148 2iyv_A Shikimate kinase, SK; t 93.6 0.024 8.4E-07 45.5 1.8 20 125-144 5-24 (184)
149 3uie_A Adenylyl-sulfate kinase 93.6 0.026 8.8E-07 46.3 1.9 22 124-145 27-48 (200)
150 1tev_A UMP-CMP kinase; ploop, 93.6 0.025 8.6E-07 45.6 1.8 20 125-144 6-25 (196)
151 1y63_A LMAJ004144AAA protein; 93.5 0.026 8.8E-07 45.6 1.8 22 124-145 12-33 (184)
152 2ck3_A ATP synthase subunit al 93.5 0.056 1.9E-06 50.9 4.2 68 126-193 166-273 (510)
153 3asz_A Uridine kinase; cytidin 93.5 0.025 8.6E-07 46.5 1.7 22 124-145 8-29 (211)
154 2xxa_A Signal recognition part 93.5 0.53 1.8E-05 43.5 10.9 22 123-144 101-122 (433)
155 2bbw_A Adenylate kinase 4, AK4 93.4 0.027 9.4E-07 47.7 1.9 22 123-144 28-49 (246)
156 3oaa_A ATP synthase subunit al 93.4 0.09 3.1E-06 49.4 5.5 64 126-193 166-265 (513)
157 2b8t_A Thymidine kinase; deoxy 93.4 0.097 3.3E-06 44.0 5.3 20 126-145 16-35 (223)
158 2pt5_A Shikimate kinase, SK; a 93.4 0.028 9.5E-07 44.3 1.8 20 125-144 3-22 (168)
159 1e6c_A Shikimate kinase; phosp 93.4 0.028 9.5E-07 44.5 1.8 20 125-144 5-24 (173)
160 2qor_A Guanylate kinase; phosp 93.4 0.029 9.8E-07 46.1 1.9 21 125-145 15-35 (204)
161 2c95_A Adenylate kinase 1; tra 93.3 0.028 9.7E-07 45.4 1.7 21 124-144 11-31 (196)
162 2cdn_A Adenylate kinase; phosp 93.3 0.035 1.2E-06 45.4 2.3 21 124-144 22-42 (201)
163 2bwj_A Adenylate kinase 5; pho 93.3 0.029 9.9E-07 45.5 1.7 22 124-145 14-35 (199)
164 2pbr_A DTMP kinase, thymidylat 93.3 0.03 1E-06 45.1 1.8 20 125-144 3-22 (195)
165 3a00_A Guanylate kinase, GMP k 93.3 0.033 1.1E-06 45.1 2.0 20 125-144 4-23 (186)
166 2qt1_A Nicotinamide riboside k 93.2 0.031 1.1E-06 45.9 1.9 23 123-145 22-44 (207)
167 1lvg_A Guanylate kinase, GMP k 93.2 0.03 1E-06 45.9 1.8 21 124-144 6-26 (198)
168 2yvu_A Probable adenylyl-sulfa 93.2 0.032 1.1E-06 45.0 1.9 21 125-145 16-36 (186)
169 3m6a_A ATP-dependent protease 93.2 0.052 1.8E-06 51.8 3.6 21 125-145 111-131 (543)
170 2plr_A DTMP kinase, probable t 93.1 0.034 1.1E-06 45.5 1.9 21 125-145 7-27 (213)
171 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.033 1.1E-06 47.8 1.9 20 125-144 7-26 (260)
172 2ze6_A Isopentenyl transferase 93.1 0.034 1.2E-06 47.6 1.9 21 125-145 4-24 (253)
173 1qf9_A UMP/CMP kinase, protein 93.0 0.035 1.2E-06 44.6 1.7 21 124-144 8-28 (194)
174 1iy2_A ATP-dependent metallopr 92.9 0.036 1.2E-06 47.9 1.9 62 125-192 76-142 (278)
175 3pxi_A Negative regulator of g 92.9 0.034 1.2E-06 55.3 1.9 20 126-145 205-224 (758)
176 2vli_A Antibiotic resistance p 92.9 0.027 9.1E-07 45.1 0.9 21 124-144 7-27 (183)
177 2z0h_A DTMP kinase, thymidylat 92.9 0.037 1.3E-06 44.8 1.8 21 125-145 3-23 (197)
178 1aky_A Adenylate kinase; ATP:A 92.9 0.037 1.3E-06 45.9 1.9 21 125-145 7-27 (220)
179 4a74_A DNA repair and recombin 92.9 0.12 4.1E-06 42.7 5.0 21 124-144 27-47 (231)
180 1ex7_A Guanylate kinase; subst 92.9 0.041 1.4E-06 45.0 2.0 19 126-144 5-23 (186)
181 3tau_A Guanylate kinase, GMP k 92.9 0.037 1.3E-06 45.7 1.8 22 124-145 10-31 (208)
182 3fb4_A Adenylate kinase; psych 92.9 0.037 1.3E-06 45.7 1.8 20 125-144 3-22 (216)
183 3dl0_A Adenylate kinase; phosp 92.8 0.039 1.3E-06 45.6 1.8 20 125-144 3-22 (216)
184 2z43_A DNA repair and recombin 92.7 0.12 4.1E-06 45.8 5.0 44 125-168 110-157 (324)
185 1znw_A Guanylate kinase, GMP k 92.7 0.043 1.5E-06 45.2 2.0 22 124-145 22-43 (207)
186 4akg_A Glutathione S-transfera 92.7 0.19 6.5E-06 56.4 7.5 77 127-207 1272-1367(2695)
187 1ak2_A Adenylate kinase isoenz 92.7 0.044 1.5E-06 46.0 2.1 22 124-145 18-39 (233)
188 1uf9_A TT1252 protein; P-loop, 92.7 0.04 1.4E-06 44.7 1.7 21 124-144 10-30 (203)
189 1zd8_A GTP:AMP phosphotransfer 92.6 0.041 1.4E-06 45.9 1.8 20 125-144 10-29 (227)
190 2wwf_A Thymidilate kinase, put 92.6 0.041 1.4E-06 45.1 1.7 21 125-145 13-33 (212)
191 3upu_A ATP-dependent DNA helic 92.6 0.12 4.3E-06 48.0 5.2 21 125-145 48-68 (459)
192 1zak_A Adenylate kinase; ATP:A 92.6 0.043 1.5E-06 45.6 1.8 21 125-145 8-28 (222)
193 2i3b_A HCR-ntpase, human cance 92.5 0.048 1.6E-06 44.6 2.0 21 125-145 4-24 (189)
194 1z6g_A Guanylate kinase; struc 92.5 0.046 1.6E-06 45.6 2.0 22 124-145 25-46 (218)
195 2v54_A DTMP kinase, thymidylat 92.5 0.044 1.5E-06 44.6 1.8 21 125-145 7-27 (204)
196 2ehv_A Hypothetical protein PH 92.5 0.047 1.6E-06 45.8 2.0 20 124-143 32-51 (251)
197 1nn5_A Similar to deoxythymidy 92.5 0.044 1.5E-06 45.0 1.7 21 125-145 12-32 (215)
198 3mfy_A V-type ATP synthase alp 92.5 0.17 5.8E-06 48.2 5.9 44 126-173 231-275 (588)
199 3aez_A Pantothenate kinase; tr 92.4 0.046 1.6E-06 48.4 1.9 22 123-144 91-112 (312)
200 2grj_A Dephospho-COA kinase; T 92.4 0.046 1.6E-06 44.8 1.8 22 123-144 13-34 (192)
201 3hjn_A DTMP kinase, thymidylat 92.4 0.18 6.1E-06 41.3 5.4 45 128-174 6-50 (197)
202 2jeo_A Uridine-cytidine kinase 92.4 0.045 1.5E-06 46.4 1.8 21 124-144 27-47 (245)
203 3bh0_A DNAB-like replicative h 92.4 0.15 5.2E-06 45.0 5.3 48 125-176 71-118 (315)
204 3dm5_A SRP54, signal recogniti 92.4 1.1 3.7E-05 41.6 11.1 22 123-144 101-122 (443)
205 4e22_A Cytidylate kinase; P-lo 92.3 0.049 1.7E-06 46.5 1.9 22 123-144 28-49 (252)
206 2pez_A Bifunctional 3'-phospho 92.3 0.049 1.7E-06 43.6 1.8 20 125-144 8-27 (179)
207 3tif_A Uncharacterized ABC tra 92.3 0.07 2.4E-06 45.1 2.8 21 124-144 33-53 (235)
208 1rz3_A Hypothetical protein rb 92.3 0.048 1.6E-06 44.7 1.7 21 124-144 24-44 (201)
209 2pcj_A ABC transporter, lipopr 92.2 0.072 2.5E-06 44.7 2.8 21 125-145 33-53 (224)
210 1gtv_A TMK, thymidylate kinase 92.2 0.03 1E-06 46.0 0.4 21 125-145 3-23 (214)
211 1htw_A HI0065; nucleotide-bind 92.2 0.055 1.9E-06 42.9 1.9 22 124-145 35-56 (158)
212 1gvn_B Zeta; postsegregational 92.1 0.053 1.8E-06 47.3 1.8 20 125-144 36-55 (287)
213 1e4v_A Adenylate kinase; trans 92.1 0.054 1.9E-06 44.7 1.8 20 125-144 3-22 (214)
214 1b0u_A Histidine permease; ABC 92.0 0.079 2.7E-06 45.6 2.8 21 125-145 35-55 (262)
215 2onk_A Molybdate/tungstate ABC 92.0 0.086 2.9E-06 44.8 3.0 23 123-145 25-47 (240)
216 1v5w_A DMC1, meiotic recombina 92.0 0.21 7.2E-06 44.6 5.8 45 125-169 125-173 (343)
217 3be4_A Adenylate kinase; malar 92.0 0.056 1.9E-06 44.8 1.8 21 125-145 8-28 (217)
218 1odf_A YGR205W, hypothetical 3 91.9 0.055 1.9E-06 47.4 1.8 22 124-145 33-54 (290)
219 1m7g_A Adenylylsulfate kinase; 91.9 0.059 2E-06 44.5 1.9 21 125-145 28-48 (211)
220 3gfo_A Cobalt import ATP-bindi 91.9 0.082 2.8E-06 45.9 2.8 20 125-144 37-56 (275)
221 2xb4_A Adenylate kinase; ATP-b 91.9 0.059 2E-06 45.0 1.9 19 126-144 4-22 (223)
222 3nwj_A ATSK2; P loop, shikimat 91.9 0.057 2E-06 46.2 1.8 21 124-144 50-70 (250)
223 2p5t_B PEZT; postsegregational 91.8 0.05 1.7E-06 46.4 1.4 21 124-144 34-54 (253)
224 1sgw_A Putative ABC transporte 91.8 0.09 3.1E-06 43.9 2.9 22 124-145 37-58 (214)
225 2i1q_A DNA repair and recombin 91.8 0.17 5.8E-06 44.6 4.9 46 125-170 101-160 (322)
226 3b85_A Phosphate starvation-in 91.7 0.058 2E-06 44.8 1.6 21 125-145 25-45 (208)
227 1vht_A Dephospho-COA kinase; s 91.7 0.062 2.1E-06 44.4 1.8 21 124-144 6-26 (218)
228 3vr4_A V-type sodium ATPase ca 91.7 0.11 3.6E-06 49.7 3.5 34 126-163 236-269 (600)
229 1uj2_A Uridine-cytidine kinase 91.6 0.063 2.2E-06 45.7 1.8 21 124-144 24-44 (252)
230 3hws_A ATP-dependent CLP prote 91.6 0.062 2.1E-06 48.3 1.8 65 125-194 54-128 (363)
231 1g6h_A High-affinity branched- 91.4 0.099 3.4E-06 44.8 2.8 21 125-145 36-56 (257)
232 1ji0_A ABC transporter; ATP bi 91.4 0.1 3.4E-06 44.3 2.8 21 125-145 35-55 (240)
233 2olj_A Amino acid ABC transpor 91.4 0.099 3.4E-06 45.1 2.8 21 125-145 53-73 (263)
234 1cr0_A DNA primase/helicase; R 91.4 0.2 6.9E-06 43.4 4.9 35 124-160 37-72 (296)
235 3zvl_A Bifunctional polynucleo 91.4 0.4 1.4E-05 44.0 7.1 21 125-145 261-281 (416)
236 2ff7_A Alpha-hemolysin translo 91.4 0.1 3.5E-06 44.5 2.8 22 124-145 37-58 (247)
237 1oix_A RAS-related protein RAB 91.4 0.07 2.4E-06 43.1 1.7 22 124-145 31-52 (191)
238 1vpl_A ABC transporter, ATP-bi 91.4 0.1 3.5E-06 44.8 2.8 22 124-145 43-64 (256)
239 1mv5_A LMRA, multidrug resista 91.3 0.1 3.5E-06 44.3 2.8 22 124-145 30-51 (243)
240 2cbz_A Multidrug resistance-as 91.3 0.072 2.5E-06 45.1 1.8 22 124-145 33-54 (237)
241 3lnc_A Guanylate kinase, GMP k 91.3 0.049 1.7E-06 45.6 0.7 20 124-143 29-48 (231)
242 2ixe_A Antigen peptide transpo 91.2 0.11 3.6E-06 45.0 2.8 21 125-145 48-68 (271)
243 3tlx_A Adenylate kinase 2; str 91.2 0.073 2.5E-06 45.1 1.8 21 124-144 31-51 (243)
244 1s96_A Guanylate kinase, GMP k 91.2 0.08 2.7E-06 44.3 1.9 22 124-145 18-39 (219)
245 1rj9_A FTSY, signal recognitio 91.2 0.078 2.7E-06 46.8 1.9 22 123-144 103-124 (304)
246 2f9l_A RAB11B, member RAS onco 91.1 0.078 2.7E-06 43.0 1.8 22 124-145 7-28 (199)
247 2wji_A Ferrous iron transport 91.1 0.085 2.9E-06 41.3 1.9 21 125-145 6-26 (165)
248 1pzn_A RAD51, DNA repair and r 91.1 0.18 6.1E-06 45.3 4.3 21 125-145 134-154 (349)
249 3ake_A Cytidylate kinase; CMP 91.1 0.079 2.7E-06 43.1 1.8 21 124-144 4-24 (208)
250 2yz2_A Putative ABC transporte 91.0 0.11 3.9E-06 44.7 2.8 22 124-145 35-56 (266)
251 4akg_A Glutathione S-transfera 91.0 0.23 7.9E-06 55.8 5.8 76 127-207 1614-1692(2695)
252 2d2e_A SUFC protein; ABC-ATPas 91.0 0.084 2.9E-06 45.1 2.0 21 124-144 31-51 (250)
253 1sq5_A Pantothenate kinase; P- 91.0 0.076 2.6E-06 46.8 1.7 22 123-144 81-102 (308)
254 3sr0_A Adenylate kinase; phosp 91.0 0.084 2.9E-06 43.8 1.9 20 126-145 4-23 (206)
255 3ney_A 55 kDa erythrocyte memb 91.0 0.085 2.9E-06 43.5 1.9 21 125-145 22-42 (197)
256 1xjc_A MOBB protein homolog; s 91.0 0.088 3E-06 42.3 1.9 23 123-145 5-27 (169)
257 2f6r_A COA synthase, bifunctio 90.9 0.084 2.9E-06 45.9 1.8 22 123-144 76-97 (281)
258 2f1r_A Molybdopterin-guanine d 90.9 0.052 1.8E-06 43.7 0.4 22 124-145 4-25 (171)
259 2zu0_C Probable ATP-dependent 90.8 0.089 3.1E-06 45.4 2.0 21 125-145 49-69 (267)
260 2pze_A Cystic fibrosis transme 90.8 0.087 3E-06 44.3 1.8 22 124-145 36-57 (229)
261 2zej_A Dardarin, leucine-rich 90.7 0.093 3.2E-06 41.9 1.9 21 125-145 5-25 (184)
262 1ltq_A Polynucleotide kinase; 90.7 0.089 3.1E-06 45.7 1.9 20 125-144 5-24 (301)
263 3b9q_A Chloroplast SRP recepto 90.7 0.091 3.1E-06 46.3 1.9 23 123-145 101-123 (302)
264 2fz4_A DNA repair protein RAD2 90.7 0.38 1.3E-05 40.4 5.8 21 125-145 111-131 (237)
265 3sop_A Neuronal-specific septi 90.6 0.089 3E-06 45.5 1.8 21 125-145 5-25 (270)
266 1j8m_F SRP54, signal recogniti 90.6 1.9 6.4E-05 37.6 10.3 22 123-144 99-120 (297)
267 3tqc_A Pantothenate kinase; bi 90.5 0.097 3.3E-06 46.5 1.9 21 124-144 94-114 (321)
268 3umf_A Adenylate kinase; rossm 90.5 0.098 3.4E-06 43.8 1.8 22 124-145 31-52 (217)
269 2ihy_A ABC transporter, ATP-bi 90.5 0.095 3.2E-06 45.6 1.8 21 125-145 50-70 (279)
270 2ghi_A Transport protein; mult 90.5 0.096 3.3E-06 45.0 1.8 21 125-145 49-69 (260)
271 2qi9_C Vitamin B12 import ATP- 90.4 0.096 3.3E-06 44.7 1.8 21 125-145 29-49 (249)
272 2nq2_C Hypothetical ABC transp 90.4 0.098 3.4E-06 44.8 1.8 21 125-145 34-54 (253)
273 2wjg_A FEOB, ferrous iron tran 90.3 0.11 3.7E-06 41.4 1.9 22 124-145 9-30 (188)
274 2vp4_A Deoxynucleoside kinase; 90.2 0.081 2.8E-06 44.3 1.1 22 124-145 22-43 (230)
275 1nlf_A Regulatory protein REPA 90.2 0.11 3.6E-06 44.9 1.9 21 124-144 32-52 (279)
276 2dyk_A GTP-binding protein; GT 90.2 0.12 4E-06 39.9 2.0 21 125-145 4-24 (161)
277 4eaq_A DTMP kinase, thymidylat 90.2 0.16 5.6E-06 42.6 3.0 21 125-145 29-49 (229)
278 3pxg_A Negative regulator of g 90.2 0.099 3.4E-06 48.9 1.8 20 126-145 205-224 (468)
279 3gmt_A Adenylate kinase; ssgci 90.1 0.11 3.7E-06 43.9 1.8 21 125-145 11-31 (230)
280 2px0_A Flagellar biosynthesis 90.1 0.11 3.7E-06 45.6 1.9 23 123-145 106-128 (296)
281 4bas_A ADP-ribosylation factor 90.0 0.11 3.8E-06 41.6 1.8 25 122-146 17-41 (199)
282 2ce2_X GTPase HRAS; signaling 90.0 0.12 4E-06 39.8 1.9 21 125-145 6-26 (166)
283 3e1s_A Exodeoxyribonuclease V, 90.0 0.43 1.5E-05 45.8 6.1 21 125-145 207-227 (574)
284 3vkg_A Dynein heavy chain, cyt 90.0 0.33 1.1E-05 55.3 5.8 76 127-207 1651-1729(3245)
285 2hf9_A Probable hydrogenase ni 89.9 0.11 3.9E-06 42.8 1.8 22 124-145 40-61 (226)
286 2dr3_A UPF0273 protein PH0284; 89.9 0.17 5.9E-06 42.2 2.9 20 125-144 26-45 (247)
287 2v9p_A Replication protein E1; 89.9 0.12 4.1E-06 45.6 1.9 21 124-144 128-148 (305)
288 1yrb_A ATP(GTP)binding protein 89.9 0.12 4.2E-06 43.7 2.0 21 124-144 16-36 (262)
289 1np6_A Molybdopterin-guanine d 89.8 0.13 4.3E-06 41.5 1.9 24 122-145 6-29 (174)
290 3r20_A Cytidylate kinase; stru 89.8 0.12 4E-06 43.8 1.8 21 124-144 11-31 (233)
291 2ffh_A Protein (FFH); SRP54, s 89.7 5.8 0.0002 36.4 13.3 23 123-145 99-121 (425)
292 1z2a_A RAS-related protein RAB 89.7 0.13 4.6E-06 39.7 1.9 21 125-145 8-28 (168)
293 2nzj_A GTP-binding protein REM 89.7 0.14 4.9E-06 39.9 2.1 22 124-145 6-27 (175)
294 3gqb_A V-type ATP synthase alp 89.6 0.12 4.1E-06 49.1 1.8 20 126-145 225-244 (578)
295 3ihw_A Centg3; RAS, centaurin, 89.5 0.15 5.1E-06 40.8 2.2 22 124-145 22-43 (184)
296 2gj8_A MNME, tRNA modification 89.5 0.14 4.6E-06 40.6 1.9 21 125-145 7-27 (172)
297 2pjz_A Hypothetical protein ST 89.5 0.13 4.3E-06 44.4 1.8 21 124-144 32-52 (263)
298 2e87_A Hypothetical protein PH 89.4 0.95 3.3E-05 40.4 7.6 24 123-146 168-191 (357)
299 3vkg_A Dynein heavy chain, cyt 89.4 0.52 1.8E-05 53.7 6.9 77 127-207 1309-1405(3245)
300 3cbq_A GTP-binding protein REM 89.4 0.12 4.1E-06 41.9 1.5 22 123-144 24-45 (195)
301 1q3t_A Cytidylate kinase; nucl 89.3 0.14 4.6E-06 43.0 1.8 21 124-144 18-38 (236)
302 2og2_A Putative signal recogni 89.2 0.14 4.7E-06 46.3 1.9 23 123-145 158-180 (359)
303 1u8z_A RAS-related protein RAL 89.2 0.15 5.2E-06 39.2 2.0 21 125-145 7-27 (168)
304 2eyu_A Twitching motility prot 89.2 0.14 4.6E-06 44.1 1.8 21 124-144 27-47 (261)
305 3cmu_A Protein RECA, recombina 89.2 0.29 1E-05 53.4 4.6 21 125-145 1430-1450(2050)
306 3cmw_A Protein RECA, recombina 89.2 0.44 1.5E-05 51.3 5.9 93 127-229 39-168 (1706)
307 2r6a_A DNAB helicase, replicat 89.1 0.9 3.1E-05 42.1 7.5 35 125-160 206-240 (454)
308 3fvq_A Fe(3+) IONS import ATP- 89.1 0.21 7.1E-06 45.1 3.0 21 125-145 33-53 (359)
309 1z08_A RAS-related protein RAB 89.1 0.2 6.9E-06 38.8 2.6 21 125-145 9-29 (170)
310 1g41_A Heat shock protein HSLU 89.1 0.14 4.7E-06 47.6 1.8 21 125-145 53-73 (444)
311 2j9r_A Thymidine kinase; TK1, 89.1 0.41 1.4E-05 39.8 4.5 20 126-145 32-51 (214)
312 2ga8_A Hypothetical 39.9 kDa p 89.0 0.14 4.9E-06 46.0 1.9 20 125-144 27-46 (359)
313 3kta_A Chromosome segregation 89.0 0.16 5.3E-06 40.5 1.9 21 124-144 28-48 (182)
314 3con_A GTPase NRAS; structural 89.0 0.16 5.4E-06 40.5 1.9 22 124-145 23-44 (190)
315 3q85_A GTP-binding protein REM 88.9 0.17 5.8E-06 39.3 2.0 20 125-144 5-24 (169)
316 2wsm_A Hydrogenase expression/ 88.9 0.15 5.1E-06 41.9 1.8 23 123-145 31-53 (221)
317 3q72_A GTP-binding protein RAD 88.9 0.15 5.1E-06 39.5 1.7 21 125-145 5-25 (166)
318 1ek0_A Protein (GTP-binding pr 88.9 0.17 5.7E-06 39.2 2.0 22 125-146 6-27 (170)
319 2erx_A GTP-binding protein DI- 88.9 0.17 5.8E-06 39.2 2.0 21 125-145 6-26 (172)
320 2h17_A ADP-ribosylation factor 88.9 0.16 5.5E-06 40.3 1.9 22 124-145 23-44 (181)
321 2gf9_A RAS-related protein RAB 88.9 0.2 6.7E-06 40.0 2.4 24 123-146 23-46 (189)
322 3crm_A TRNA delta(2)-isopenten 88.9 0.15 5.2E-06 45.3 1.9 22 124-145 7-28 (323)
323 2ged_A SR-beta, signal recogni 88.8 0.17 5.8E-06 40.4 2.0 22 124-145 50-71 (193)
324 3t1o_A Gliding protein MGLA; G 88.7 0.17 5.7E-06 40.4 1.9 21 124-144 16-36 (198)
325 3d3q_A TRNA delta(2)-isopenten 88.7 0.15 5.2E-06 45.6 1.8 22 124-145 9-30 (340)
326 1z0j_A RAB-22, RAS-related pro 88.7 0.18 6E-06 39.1 2.0 22 125-146 9-30 (170)
327 1lw7_A Transcriptional regulat 88.7 0.14 4.8E-06 46.1 1.6 23 123-145 171-193 (365)
328 3nh6_A ATP-binding cassette SU 88.7 0.12 4E-06 45.7 1.0 20 125-144 83-102 (306)
329 1c1y_A RAS-related protein RAP 88.7 0.17 6E-06 39.0 1.9 21 125-145 6-26 (167)
330 2il1_A RAB12; G-protein, GDP, 88.7 0.16 5.6E-06 40.7 1.8 22 124-145 28-49 (192)
331 1svm_A Large T antigen; AAA+ f 88.6 0.16 5.4E-06 46.2 1.8 21 124-144 171-191 (377)
332 1kao_A RAP2A; GTP-binding prot 88.6 0.18 6.2E-06 38.7 2.0 21 125-145 6-26 (167)
333 2bbs_A Cystic fibrosis transme 88.5 0.16 5.4E-06 44.4 1.7 22 124-145 66-87 (290)
334 1m7b_A RND3/RHOE small GTP-bin 88.4 0.18 6.1E-06 40.1 1.9 21 125-145 10-30 (184)
335 1ky3_A GTP-binding protein YPT 88.4 0.19 6.5E-06 39.4 2.0 22 124-145 10-31 (182)
336 2hxs_A RAB-26, RAS-related pro 88.3 0.21 7.3E-06 39.1 2.3 21 125-145 9-29 (178)
337 2qnr_A Septin-2, protein NEDD5 88.3 0.17 5.8E-06 44.4 1.8 19 126-144 22-40 (301)
338 3llu_A RAS-related GTP-binding 88.3 0.19 6.6E-06 40.5 2.0 22 124-145 22-43 (196)
339 2yhs_A FTSY, cell division pro 88.3 0.17 5.7E-06 47.7 1.8 23 123-145 294-316 (503)
340 1z0f_A RAB14, member RAS oncog 88.2 0.21 7E-06 39.1 2.1 24 123-146 16-39 (179)
341 4edh_A DTMP kinase, thymidylat 88.2 0.49 1.7E-05 39.2 4.5 20 126-145 10-29 (213)
342 2yyz_A Sugar ABC transporter, 88.2 0.26 9E-06 44.4 3.0 21 125-145 32-52 (359)
343 1svi_A GTP-binding protein YSX 88.2 0.2 6.9E-06 40.0 2.0 23 123-145 24-46 (195)
344 2lkc_A Translation initiation 88.2 0.26 8.8E-06 38.6 2.6 22 124-145 10-31 (178)
345 3tw8_B RAS-related protein RAB 88.1 0.19 6.4E-06 39.4 1.8 22 124-145 11-32 (181)
346 1nrj_B SR-beta, signal recogni 88.1 0.19 6.6E-06 41.1 1.9 22 124-145 14-35 (218)
347 2it1_A 362AA long hypothetical 88.1 0.27 9.2E-06 44.4 3.0 21 125-145 32-52 (362)
348 1g29_1 MALK, maltose transport 88.1 0.27 9.2E-06 44.6 3.0 21 125-145 32-52 (372)
349 2cxx_A Probable GTP-binding pr 88.1 0.21 7.1E-06 39.6 2.0 21 125-145 4-24 (190)
350 1vma_A Cell division protein F 88.1 0.19 6.4E-06 44.3 1.9 23 123-145 105-127 (306)
351 1pui_A ENGB, probable GTP-bind 88.1 0.1 3.5E-06 42.4 0.2 22 124-145 28-49 (210)
352 1wms_A RAB-9, RAB9, RAS-relate 88.0 0.2 7E-06 39.1 2.0 22 124-145 9-30 (177)
353 2fn4_A P23, RAS-related protei 88.0 0.2 6.8E-06 39.3 1.9 22 124-145 11-32 (181)
354 3rlf_A Maltose/maltodextrin im 88.0 0.27 9.4E-06 44.7 3.0 21 125-145 32-52 (381)
355 1v43_A Sugar-binding transport 88.0 0.27 9.4E-06 44.5 3.0 21 125-145 40-60 (372)
356 3pqc_A Probable GTP-binding pr 88.0 0.21 7.3E-06 39.6 2.1 24 123-146 24-47 (195)
357 4hlc_A DTMP kinase, thymidylat 88.0 0.27 9.3E-06 40.5 2.8 25 127-153 7-31 (205)
358 1r2q_A RAS-related protein RAB 88.0 0.21 7.1E-06 38.6 2.0 21 125-145 9-29 (170)
359 3d31_A Sulfate/molybdate ABC t 87.9 0.21 7.3E-06 44.8 2.2 21 125-145 29-49 (348)
360 2ocp_A DGK, deoxyguanosine kin 87.9 0.18 6.3E-06 42.3 1.7 21 125-145 5-25 (241)
361 1z47_A CYSA, putative ABC-tran 87.9 0.19 6.7E-06 45.2 2.0 21 125-145 44-64 (355)
362 1g16_A RAS-related protein SEC 87.9 0.21 7.1E-06 38.7 1.9 21 125-145 6-26 (170)
363 1g5t_A COB(I)alamin adenosyltr 87.9 1.5 5.1E-05 35.9 7.1 42 181-232 119-163 (196)
364 1fzq_A ADP-ribosylation factor 87.9 0.19 6.5E-06 40.0 1.7 22 124-145 18-39 (181)
365 1f6b_A SAR1; gtpases, N-termin 87.9 0.18 6.2E-06 40.8 1.6 22 124-145 27-48 (198)
366 4dsu_A GTPase KRAS, isoform 2B 87.8 0.21 7.2E-06 39.5 2.0 22 125-146 7-28 (189)
367 2iwr_A Centaurin gamma 1; ANK 87.8 0.18 6.2E-06 39.6 1.5 21 125-145 10-30 (178)
368 3a8t_A Adenylate isopentenyltr 87.7 0.21 7.1E-06 44.7 2.0 22 124-145 42-63 (339)
369 2h57_A ADP-ribosylation factor 87.7 0.18 6.3E-06 40.2 1.5 23 124-146 23-45 (190)
370 1r8s_A ADP-ribosylation factor 87.7 0.21 7.3E-06 38.5 1.9 21 125-145 3-23 (164)
371 2h92_A Cytidylate kinase; ross 87.6 0.2 7E-06 41.1 1.8 20 125-144 6-25 (219)
372 1upt_A ARL1, ADP-ribosylation 87.6 0.22 7.7E-06 38.6 2.0 21 125-145 10-30 (171)
373 2gco_A H9, RHO-related GTP-bin 87.6 0.29 1E-05 39.5 2.7 22 124-145 27-48 (201)
374 2bme_A RAB4A, RAS-related prot 87.6 0.22 7.5E-06 39.4 1.9 22 124-145 12-33 (186)
375 4f4c_A Multidrug resistance pr 87.5 0.73 2.5E-05 48.7 6.3 21 125-145 447-467 (1321)
376 1m2o_B GTP-binding protein SAR 87.5 0.22 7.6E-06 40.0 1.9 22 124-145 25-46 (190)
377 3iev_A GTP-binding protein ERA 87.5 0.22 7.6E-06 43.7 2.0 26 120-145 8-33 (308)
378 3c5c_A RAS-like protein 12; GD 87.5 0.23 7.7E-06 39.8 1.9 22 124-145 23-44 (187)
379 3kkq_A RAS-related protein M-R 87.5 0.27 9.2E-06 38.8 2.4 22 124-145 20-41 (183)
380 2a9k_A RAS-related protein RAL 87.4 0.23 8E-06 39.0 2.0 22 124-145 20-41 (187)
381 2obl_A ESCN; ATPase, hydrolase 87.3 0.21 7.1E-06 44.9 1.8 21 125-145 74-94 (347)
382 2y8e_A RAB-protein 6, GH09086P 87.3 0.23 8E-06 38.7 1.9 22 124-145 16-37 (179)
383 2efe_B Small GTP-binding prote 87.3 0.24 8.1E-06 38.9 2.0 22 124-145 14-35 (181)
384 2a5j_A RAS-related protein RAB 87.3 0.31 1.1E-05 38.9 2.6 22 124-145 23-44 (191)
385 3t5g_A GTP-binding protein RHE 87.3 0.27 9.3E-06 38.6 2.3 22 124-145 8-29 (181)
386 1mh1_A RAC1; GTP-binding, GTPa 87.2 0.24 8.1E-06 39.0 1.9 21 125-145 8-28 (186)
387 3bc1_A RAS-related protein RAB 87.2 0.24 8.3E-06 39.2 2.0 22 124-145 13-34 (195)
388 3llm_A ATP-dependent RNA helic 87.2 0.99 3.4E-05 37.6 5.9 18 125-142 79-96 (235)
389 2bov_A RAla, RAS-related prote 87.2 0.24 8.3E-06 39.8 2.0 22 124-145 16-37 (206)
390 2oil_A CATX-8, RAS-related pro 87.2 0.24 8.4E-06 39.5 2.0 22 124-145 27-48 (193)
391 1p5z_B DCK, deoxycytidine kina 87.0 0.15 5.1E-06 43.5 0.6 22 124-145 26-47 (263)
392 3bwd_D RAC-like GTP-binding pr 87.0 0.25 8.6E-06 38.8 1.9 21 125-145 11-31 (182)
393 1ypw_A Transitional endoplasmi 87.0 0.23 8E-06 49.7 2.1 63 125-193 514-581 (806)
394 3lv8_A DTMP kinase, thymidylat 87.0 0.57 2E-05 39.6 4.2 49 125-174 30-78 (236)
395 2g6b_A RAS-related protein RAB 86.9 0.26 8.9E-06 38.6 2.0 23 124-146 12-34 (180)
396 2qm8_A GTPase/ATPase; G protei 86.9 0.24 8.1E-06 44.2 1.9 22 123-144 56-77 (337)
397 1moz_A ARL1, ADP-ribosylation 86.9 0.2 6.8E-06 39.5 1.3 22 124-145 20-41 (183)
398 1oxx_K GLCV, glucose, ABC tran 86.8 0.22 7.5E-06 44.8 1.6 21 125-145 34-54 (353)
399 2fg5_A RAB-22B, RAS-related pr 86.8 0.25 8.5E-06 39.6 1.8 23 124-146 25-47 (192)
400 1vg8_A RAS-related protein RAB 86.8 0.26 8.9E-06 39.7 2.0 22 124-145 10-31 (207)
401 3lxx_A GTPase IMAP family memb 86.7 0.26 8.8E-06 41.2 1.9 23 124-146 31-53 (239)
402 1zbd_A Rabphilin-3A; G protein 86.7 0.28 9.7E-06 39.5 2.1 23 124-146 10-32 (203)
403 2qag_B Septin-6, protein NEDD5 86.7 0.24 8.2E-06 45.8 1.8 21 125-145 45-65 (427)
404 1nij_A Hypothetical protein YJ 86.6 0.23 8E-06 43.8 1.7 24 122-145 4-27 (318)
405 1ksh_A ARF-like protein 2; sma 86.6 0.27 9.3E-06 38.9 2.0 23 124-146 20-42 (186)
406 2atv_A RERG, RAS-like estrogen 86.6 0.27 9.2E-06 39.5 1.9 22 124-145 30-51 (196)
407 1a7j_A Phosphoribulokinase; tr 86.6 0.14 4.8E-06 44.7 0.2 21 124-144 7-27 (290)
408 2r8r_A Sensor protein; KDPD, P 86.6 0.26 9E-06 41.5 1.9 20 126-145 10-29 (228)
409 4tmk_A Protein (thymidylate ki 86.5 0.65 2.2E-05 38.5 4.3 49 126-175 7-55 (213)
410 1ega_A Protein (GTP-binding pr 86.5 0.27 9.2E-06 43.1 2.0 22 124-145 10-31 (301)
411 3v9p_A DTMP kinase, thymidylat 86.4 0.46 1.6E-05 39.9 3.3 20 126-145 29-48 (227)
412 2axn_A 6-phosphofructo-2-kinas 86.4 0.25 8.6E-06 46.9 1.9 20 125-144 38-57 (520)
413 3tkl_A RAS-related protein RAB 86.4 0.37 1.3E-05 38.4 2.6 23 124-146 18-40 (196)
414 2q3h_A RAS homolog gene family 86.4 0.29 9.9E-06 39.3 2.0 22 124-145 22-43 (201)
415 1bif_A 6-phosphofructo-2-kinas 86.3 0.25 8.7E-06 46.1 1.9 21 125-145 42-62 (469)
416 3reg_A RHO-like small GTPase; 86.3 0.29 9.8E-06 39.2 2.0 23 124-146 25-47 (194)
417 1gwn_A RHO-related GTP-binding 86.3 0.28 9.6E-06 40.0 1.9 22 124-145 30-51 (205)
418 2fh5_B SR-beta, signal recogni 86.2 0.29 9.9E-06 39.8 2.0 21 125-145 10-30 (214)
419 4f4c_A Multidrug resistance pr 86.2 0.5 1.7E-05 49.9 4.2 20 125-144 1108-1127(1321)
420 2gza_A Type IV secretion syste 86.2 0.27 9.3E-06 44.3 1.9 20 126-145 179-198 (361)
421 3clv_A RAB5 protein, putative; 86.2 0.29 9.9E-06 39.0 1.9 21 125-145 10-30 (208)
422 3oes_A GTPase rhebl1; small GT 86.2 0.29 9.8E-06 39.5 1.9 23 124-146 26-48 (201)
423 1zu4_A FTSY; GTPase, signal re 86.2 0.28 9.4E-06 43.5 1.9 23 123-145 106-128 (320)
424 2www_A Methylmalonic aciduria 86.2 0.27 9.4E-06 44.0 1.9 22 123-144 75-96 (349)
425 2cjw_A GTP-binding protein GEM 86.1 0.3 1E-05 39.3 2.0 21 124-144 8-28 (192)
426 2zts_A Putative uncharacterize 86.1 0.3 1E-05 40.7 2.0 20 125-144 33-52 (251)
427 3thx_A DNA mismatch repair pro 86.1 1.1 3.9E-05 45.4 6.5 18 125-142 665-682 (934)
428 3gd7_A Fusion complex of cysti 86.1 0.28 9.5E-06 44.8 1.9 20 125-144 50-69 (390)
429 1zd9_A ADP-ribosylation factor 86.0 0.31 1E-05 38.9 2.0 22 124-145 24-45 (188)
430 1ls1_A Signal recognition part 86.0 0.28 9.6E-06 42.9 1.9 23 123-145 99-121 (295)
431 1x3s_A RAS-related protein RAB 85.9 0.31 1.1E-05 38.7 2.0 22 124-145 17-38 (195)
432 2o52_A RAS-related protein RAB 85.9 0.31 1.1E-05 39.4 2.0 22 124-145 27-48 (200)
433 3dz8_A RAS-related protein RAB 85.9 0.3 1E-05 39.0 1.8 23 123-145 24-46 (191)
434 2b6h_A ADP-ribosylation factor 85.8 0.29 9.9E-06 39.3 1.7 22 124-145 31-52 (192)
435 3k53_A Ferrous iron transport 85.8 0.3 1E-05 41.8 1.9 22 124-145 5-26 (271)
436 1zj6_A ADP-ribosylation factor 85.7 0.33 1.1E-05 38.5 2.0 21 125-145 19-39 (187)
437 1z06_A RAS-related protein RAB 85.7 0.32 1.1E-05 38.7 2.0 22 124-145 22-43 (189)
438 2ew1_A RAS-related protein RAB 85.7 0.31 1.1E-05 39.7 1.9 22 124-145 28-49 (201)
439 2p5s_A RAS and EF-hand domain 85.7 0.32 1.1E-05 39.1 2.0 22 124-145 30-51 (199)
440 2npi_A Protein CLP1; CLP1-PCF1 85.6 0.29 9.9E-06 45.7 1.8 22 124-145 140-161 (460)
441 2rcn_A Probable GTPase ENGC; Y 85.6 0.3 1E-05 44.0 1.9 22 124-145 217-238 (358)
442 2gf0_A GTP-binding protein DI- 85.6 0.31 1.1E-05 38.9 1.8 22 124-145 10-31 (199)
443 3fwy_A Light-independent proto 85.6 0.31 1E-05 43.1 1.9 22 123-144 49-70 (314)
444 2bcg_Y Protein YP2, GTP-bindin 85.5 0.32 1.1E-05 39.3 1.9 22 124-145 10-31 (206)
445 3exa_A TRNA delta(2)-isopenten 85.5 0.31 1.1E-05 43.1 1.9 21 125-145 6-26 (322)
446 2yv5_A YJEQ protein; hydrolase 85.4 0.32 1.1E-05 42.6 2.0 21 124-145 167-187 (302)
447 1f2t_A RAD50 ABC-ATPase; DNA d 85.3 0.36 1.2E-05 37.6 2.0 21 124-144 25-45 (149)
448 3foz_A TRNA delta(2)-isopenten 85.3 0.32 1.1E-05 43.0 1.9 22 124-145 12-33 (316)
449 2q6t_A DNAB replication FORK h 85.3 0.94 3.2E-05 41.8 5.1 48 125-175 203-250 (444)
450 2qu8_A Putative nucleolar GTP- 85.2 0.35 1.2E-05 40.0 1.9 22 124-145 31-52 (228)
451 2j1l_A RHO-related GTP-binding 85.2 0.35 1.2E-05 39.6 2.0 22 124-145 36-57 (214)
452 3ld9_A DTMP kinase, thymidylat 85.2 0.63 2.2E-05 39.0 3.5 21 125-145 24-44 (223)
453 2qag_C Septin-7; cell cycle, c 85.1 0.32 1.1E-05 44.8 1.8 21 125-145 34-54 (418)
454 2v3c_C SRP54, signal recogniti 85.0 0.29 9.8E-06 45.3 1.5 23 123-145 100-122 (432)
455 4a1f_A DNAB helicase, replicat 85.0 0.81 2.8E-05 40.8 4.4 49 125-177 49-97 (338)
456 3p32_A Probable GTPase RV1496/ 84.9 0.34 1.2E-05 43.4 1.9 22 123-144 80-101 (355)
457 2qmh_A HPR kinase/phosphorylas 84.9 0.37 1.3E-05 39.8 1.9 21 125-145 37-57 (205)
458 2ewv_A Twitching motility prot 84.9 0.34 1.2E-05 43.8 1.9 20 125-144 139-158 (372)
459 2qtf_A Protein HFLX, GTP-bindi 84.8 0.7 2.4E-05 41.6 3.9 23 124-146 181-203 (364)
460 2fv8_A H6, RHO-related GTP-bin 84.8 0.37 1.3E-05 39.1 1.9 22 124-145 27-48 (207)
461 2dpy_A FLII, flagellum-specifi 84.8 0.33 1.1E-05 45.0 1.8 21 125-145 160-180 (438)
462 2atx_A Small GTP binding prote 84.7 0.37 1.3E-05 38.5 1.9 22 124-145 20-41 (194)
463 2j0v_A RAC-like GTP-binding pr 84.7 0.37 1.3E-05 39.1 1.9 22 124-145 11-32 (212)
464 2xtp_A GTPase IMAP family memb 84.6 0.36 1.2E-05 40.8 1.9 23 124-146 24-46 (260)
465 4gzl_A RAS-related C3 botulinu 84.6 0.37 1.3E-05 39.1 1.9 21 125-145 33-53 (204)
466 2f7s_A C25KG, RAS-related prot 84.6 0.41 1.4E-05 39.0 2.1 22 124-145 27-48 (217)
467 3cph_A RAS-related protein SEC 84.6 0.39 1.3E-05 38.8 2.0 22 124-145 22-43 (213)
468 2hup_A RAS-related protein RAB 84.5 0.38 1.3E-05 38.9 1.9 23 123-145 30-52 (201)
469 1tq4_A IIGP1, interferon-induc 84.5 0.36 1.2E-05 44.4 1.9 21 124-144 71-91 (413)
470 3cr8_A Sulfate adenylyltranfer 84.4 0.27 9.2E-06 47.0 1.0 21 125-145 372-392 (552)
471 2g3y_A GTP-binding protein GEM 84.3 0.41 1.4E-05 39.5 2.0 21 124-144 39-59 (211)
472 2o8b_B DNA mismatch repair pro 84.1 1.7 5.7E-05 44.7 6.7 18 125-142 792-809 (1022)
473 3q3j_B RHO-related GTP-binding 84.0 0.42 1.4E-05 39.2 1.9 22 124-145 29-50 (214)
474 2fu5_C RAS-related protein RAB 84.0 0.25 8.5E-06 39.0 0.5 22 124-145 10-31 (183)
475 2x77_A ADP-ribosylation factor 83.9 0.34 1.2E-05 38.5 1.3 22 124-145 24-45 (189)
476 1yqt_A RNAse L inhibitor; ATP- 83.9 0.4 1.4E-05 45.7 2.0 22 124-145 49-70 (538)
477 1qhl_A Protein (cell division 83.8 0.29 9.8E-06 41.2 0.8 21 124-144 29-49 (227)
478 1yqt_A RNAse L inhibitor; ATP- 83.8 0.4 1.4E-05 45.6 2.0 21 125-145 315-335 (538)
479 2xau_A PRE-mRNA-splicing facto 83.7 2 6.8E-05 42.7 7.0 19 125-143 112-130 (773)
480 3ozx_A RNAse L inhibitor; ATP 83.6 0.4 1.4E-05 45.7 1.8 21 125-145 297-317 (538)
481 2gk6_A Regulator of nonsense t 83.6 0.56 1.9E-05 45.4 2.9 48 126-175 199-246 (624)
482 1wf3_A GTP-binding protein; GT 83.6 0.43 1.5E-05 41.8 1.9 22 124-145 9-30 (301)
483 3b5x_A Lipid A export ATP-bind 83.5 0.65 2.2E-05 44.5 3.3 21 125-145 372-392 (582)
484 3cmu_A Protein RECA, recombina 83.5 0.8 2.7E-05 50.1 4.2 67 126-194 1085-1171(2050)
485 1c9k_A COBU, adenosylcobinamid 83.3 1 3.4E-05 36.4 3.9 34 126-165 3-36 (180)
486 4dkx_A RAS-related protein RAB 83.2 0.48 1.6E-05 39.3 2.0 21 125-145 16-36 (216)
487 2p67_A LAO/AO transport system 83.2 0.44 1.5E-05 42.4 1.8 22 123-144 57-78 (341)
488 1u0l_A Probable GTPase ENGC; p 83.2 0.44 1.5E-05 41.6 1.8 22 124-145 171-192 (301)
489 3lxw_A GTPase IMAP family memb 83.0 0.47 1.6E-05 40.1 1.9 23 124-146 23-45 (247)
490 3f9v_A Minichromosome maintena 83.0 0.28 9.5E-06 47.4 0.5 20 126-145 331-350 (595)
491 3ozx_A RNAse L inhibitor; ATP 83.0 0.53 1.8E-05 44.8 2.4 23 123-145 26-48 (538)
492 3b60_A Lipid A export ATP-bind 82.8 0.6 2.1E-05 44.8 2.8 21 125-145 372-392 (582)
493 1cp2_A CP2, nitrogenase iron p 82.8 0.49 1.7E-05 40.1 1.9 20 125-144 4-23 (269)
494 2j37_W Signal recognition part 82.7 1.3 4.6E-05 41.7 5.0 22 123-144 102-123 (504)
495 3euj_A Chromosome partition pr 82.7 0.48 1.6E-05 44.5 2.0 22 123-144 30-51 (483)
496 3ez2_A Plasmid partition prote 82.6 4 0.00014 36.8 8.1 21 124-144 110-131 (398)
497 4i1u_A Dephospho-COA kinase; s 82.6 0.49 1.7E-05 39.3 1.8 23 122-144 9-31 (210)
498 3end_A Light-independent proto 82.6 0.52 1.8E-05 41.0 2.0 23 122-144 41-63 (307)
499 3bk7_A ABC transporter ATP-bin 82.6 0.48 1.6E-05 45.8 2.0 21 125-145 385-405 (607)
500 1t9h_A YLOQ, probable GTPase E 82.5 0.24 8.1E-06 43.7 -0.2 22 124-145 175-196 (307)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.87 E-value=1.3e-22 Score=196.42 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=95.2
Q ss_pred cccccccccCCcchHHHHHHHhc--ccccccCCCceEEEEeCCCC--CHHHHHHHHHHhhcCC-----------------
Q 043781 122 INVSDVRGMGGIGKTTLAQFAYN--DKDVIENFDKRIWVCVSDPF--DEFRIAKAIIEGLEGS----------------- 180 (297)
Q Consensus 122 ~~~~~i~G~~G~GKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~~~~~----------------- 180 (297)
...++|+||||+||||||+.+|+ +.+++.+|+.++||++++.+ ++..++..|+.+++..
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l 231 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 231 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence 35578999999999999999998 67899999999999999985 7899999999887631
Q ss_pred ---------Cc-eEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhC-CCcccc
Q 043781 181 ---------EK-KFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLG-LRAKFP 249 (297)
Q Consensus 181 ---------~k-r~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~-~~~~~~ 249 (297)
++ ||||||||||+.+ ++ .++. .+||+||||||.. .++..++ ...+|+
T Consensus 232 ~~~l~~~L~~~kr~LlVLDdv~~~~--~~-----~~~~-----------~~gs~ilvTTR~~----~v~~~~~~~~~~~~ 289 (549)
T 2a5y_B 232 KRMICNALIDRPNTLFVFDDVVQEE--TI-----RWAQ-----------ELRLRCLVTTRDV----EISNAASQTCEFIE 289 (549)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECCHH--HH-----HHHH-----------HTTCEEEEEESBG----GGGGGCCSCEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEECCCCch--hh-----cccc-----------cCCCEEEEEcCCH----HHHHHcCCCCeEEE
Confidence 54 9999999999862 33 3332 4789999999954 4455554 335677
Q ss_pred CCccc---hhhhhhhhhccC
Q 043781 250 VSIFD---AKKIWGWEVFGR 266 (297)
Q Consensus 250 l~~l~---~~~lf~~~~f~~ 266 (297)
|++|+ +++||.+.+|..
T Consensus 290 l~~L~~~ea~~Lf~~~a~~~ 309 (549)
T 2a5y_B 290 VTSLEIDECYDFLEAYGMPM 309 (549)
T ss_dssp CCCCCHHHHHHHHHHTSCCC
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 77776 555666665544
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.70 E-value=2.7e-18 Score=172.90 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=77.5
Q ss_pred ccccccccCCcchHHHHHHHhcccccccCCCc-eEEEEeCCCCCHHHHHHHHHHhhc-----------------------
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYNDKDVIENFDK-RIWVCVSDPFDEFRIAKAIIEGLE----------------------- 178 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~~~----------------------- 178 (297)
..+.|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|+..++
T Consensus 151 RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL 230 (1221)
T 1vt4_I 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230 (1221)
T ss_dssp CEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHH
T ss_pred eEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHH
Confidence 45789999999999999999998888999986 899999999988777776655321
Q ss_pred ----------CCCceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHH
Q 043781 179 ----------GSEKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHL 238 (297)
Q Consensus 179 ----------~~~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v 238 (297)
..++|+||||||||+. +.|+. | .+||+||||||...++..+
T Consensus 231 ~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~----f-------------~pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 231 QAELRRLLKSKPYENCLLVLLNVQNA--KAWNA----F-------------NLSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HHHHHHHHHHSTTSSCEEEEESCCCH--HHHHH----H-------------HSSCCEEEECSCSHHHHHH
T ss_pred HHHHHHHHHhhcCCCEEEEEeCcChH--HHHHh----h-------------CCCeEEEEeccChHHHHhc
Confidence 0159999999999995 45543 2 3679999999987665433
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.63 E-value=1e-16 Score=167.19 Aligned_cols=119 Identities=24% Similarity=0.347 Sum_probs=81.5
Q ss_pred ccccccccCCcchHHHHHHHhccccc-ccCC-CceEEEEeCCCCC--HHHHHHHHHHhhcCC------------------
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYNDKDV-IENF-DKRIWVCVSDPFD--EFRIAKAIIEGLEGS------------------ 180 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~~i~~~~~~~------------------ 180 (297)
..+.|+||||+||||||+.+|++.+. ..+| +.++||++++..+ ....+..++..+...
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 227 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRL 227 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHH
Confidence 34679999999999999999997544 4555 5777999998643 333455555555432
Q ss_pred -------CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHh-hCCCccccCCc
Q 043781 181 -------EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLT-LGLRAKFPVSI 252 (297)
Q Consensus 181 -------~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~-~~~~~~~~l~~ 252 (297)
++||||||||||+. .+|+.+ ++||+||||||.+. ++.. ++..+.+++..
T Consensus 228 ~~~l~~~~~~~LlvlDd~~~~--~~~~~~-----------------~~~~~ilvTtR~~~----~~~~~~~~~~~~~~~~ 284 (1249)
T 3sfz_A 228 RVLMLRKHPRSLLILDDVWDP--WVLKAF-----------------DNQCQILLTTRDKS----VTDSVMGPKHVVPVES 284 (1249)
T ss_dssp HHHTSSSSCSCEEEEESCCCH--HHHTTT-----------------CSSCEEEEEESSTT----TTTTCCSCBCCEECCS
T ss_pred HHHHhccCCCEEEEEecCCCH--HHHHhh-----------------cCCCEEEEEcCCHH----HHHhhcCCceEEEecC
Confidence 34999999999986 333332 68899999999554 4422 34456666664
Q ss_pred -cc---hhhhhhhhhc
Q 043781 253 -FD---AKKIWGWEVF 264 (297)
Q Consensus 253 -l~---~~~lf~~~~f 264 (297)
|+ +++||...++
T Consensus 285 ~l~~~~a~~l~~~~~~ 300 (1249)
T 3sfz_A 285 GLGREKGLEILSLFVN 300 (1249)
T ss_dssp SCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhhC
Confidence 54 5566665554
No 4
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.50 E-value=5.5e-14 Score=107.82 Aligned_cols=65 Identities=23% Similarity=0.428 Sum_probs=60.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043781 2 RSFFQDFGKQVKKLTSNLRAIQAVLNDAEQR--QVKEASVRLWLDQLKEASYDMEDVLDEWITARLK 66 (297)
Q Consensus 2 ~~ll~~~~~~~~~L~~eL~~i~a~l~~ae~~--~~~~~~v~~Wl~~lr~~ayd~eD~ld~~~~~~~~ 66 (297)
++++.+++++++.|+++|..|+++|.+|+.+ +..++.++.|+++||+++||+||+||+|.++...
T Consensus 18 ~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 18 FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999988 5688999999999999999999999999988753
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.48 E-value=7.5e-15 Score=142.73 Aligned_cols=119 Identities=24% Similarity=0.273 Sum_probs=77.3
Q ss_pred ccccccccCCcchHHHHHHHhccccc-ccCC-CceEEEEeCCCCCHHHHHHHH---HHhhcC------C-----------
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYNDKDV-IENF-DKRIWVCVSDPFDEFRIAKAI---IEGLEG------S----------- 180 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i---~~~~~~------~----------- 180 (297)
..+.|+||||+||||||..++++.++ ..+| +.++|++++.. +...++..+ +..++. .
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDR 226 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHH
Confidence 45679999999999999999997655 7889 58999998765 333333333 333331 0
Q ss_pred --------CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhC-C-CccccC
Q 043781 181 --------EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLG-L-RAKFPV 250 (297)
Q Consensus 181 --------~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~-~-~~~~~l 250 (297)
.+++||||||+|+. . .+. .+ ++|++||||||...+ +..++ . ..+..+
T Consensus 227 l~~~l~~~~~~~LLVLDdv~~~--~---~l~-~l-------------~~~~~ilvTsR~~~~----~~~~~~~~~~v~~l 283 (591)
T 1z6t_A 227 LRILMLRKHPRSLLILDDVWDS--W---VLK-AF-------------DSQCQILLTTRDKSV----TDSVMGPKYVVPVE 283 (591)
T ss_dssp HHHHHHHTCTTCEEEEEEECCH--H---HHH-TT-------------CSSCEEEEEESCGGG----GTTCCSCEEEEECC
T ss_pred HHHHHccCCCCeEEEEeCCCCH--H---HHH-Hh-------------cCCCeEEEECCCcHH----HHhcCCCceEeecC
Confidence 37899999999874 2 221 11 678999999996543 32222 1 123322
Q ss_pred Ccc---chhhhhhhhhcc
Q 043781 251 SIF---DAKKIWGWEVFG 265 (297)
Q Consensus 251 ~~l---~~~~lf~~~~f~ 265 (297)
++| ++.+||...++.
T Consensus 284 ~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp SSCCHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 345 456666666554
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.73 E-value=1.3e-08 Score=93.92 Aligned_cols=68 Identities=26% Similarity=0.342 Sum_probs=48.7
Q ss_pred ccccCCcchHHHHHHHhcccccc---cCCC-ceEEEEeCCCCCHHHHHHHHHHhhcCC----------------------
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI---ENFD-KRIWVCVSDPFDEFRIAKAIIEGLEGS---------------------- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~~~~~~i~~~~~~~---------------------- 180 (297)
|+|++|+|||||++.+++..... ..|. ..+|+......+...++..|+.+++..
T Consensus 57 i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 136 (412)
T 1w5s_A 57 SIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE 136 (412)
T ss_dssp CTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 39999999999999999842211 1123 356777666667777777777665421
Q ss_pred CceEEEEEeCCCCC
Q 043781 181 EKKFFLILDDVWTD 194 (297)
Q Consensus 181 ~kr~LiVlDdv~~~ 194 (297)
+++++|||||+|..
T Consensus 137 ~~~~llvlDe~~~l 150 (412)
T 1w5s_A 137 NHYLLVILDEFQSM 150 (412)
T ss_dssp TCEEEEEEESTHHH
T ss_pred CCeEEEEEeCHHHH
Confidence 57999999999874
No 7
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.63 E-value=1.1e-07 Score=79.38 Aligned_cols=119 Identities=16% Similarity=0.040 Sum_probs=70.3
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCC-ceEEEEeCCCCCHHHHHHHHHHhhcC----CCceEEEEEeCCCCCCccCH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAIIEGLEG----SEKKFFLILDDVWTDDYSKW 199 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~~~~----~~kr~LiVlDdv~~~~~~~w 199 (297)
.-|+|.+|+|||+||+.+++... ...+. ..+.+..+.......+...+...... .+++.+|||||++......+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHH
Confidence 45889999999999999987311 11222 23444555555544443333222221 16789999999988754556
Q ss_pred HHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhh
Q 043781 200 EPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
+.|...+... ..+.++|+||+.... ...+.... ..+.+.+++..+
T Consensus 120 ~~l~~~l~~~----------~~~~~~i~~~~~~~~~~~~l~~r~---~~i~~~~~~~~~ 165 (226)
T 2chg_A 120 AALRRTMEMY----------SKSCRFILSCNYVSRIIEPIQSRC---AVFRFKPVPKEA 165 (226)
T ss_dssp HHHHHHHHHT----------TTTEEEEEEESCGGGSCHHHHTTS---EEEECCCCCHHH
T ss_pred HHHHHHHHhc----------CCCCeEEEEeCChhhcCHHHHHhC---ceeecCCCCHHH
Confidence 6666666542 556788888875432 12222222 255666666554
No 8
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.60 E-value=9.3e-08 Score=80.75 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=70.0
Q ss_pred ccccccCCcchHHHHHHHhcccccccC-------------------CCceEEEEeCCCCCHHHHHHHHHHhhcCC---Cc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIEN-------------------FDKRIWVCVSDPFDEFRIAKAIIEGLEGS---EK 182 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~k 182 (297)
.-|+|++|+||||||+.+++....... +.....+.... ......+..++..+... ++
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 126 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGR 126 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC-GGGHHHHHHHHHSCCCSCSSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc-cccHHHHHHHHHHhhhchhcCC
Confidence 358899999999999999874221111 11122333222 22334455666665432 67
Q ss_pred eEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhh
Q 043781 183 KFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 183 r~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
+.+|||||++..+...++.|...+... ..+..+|+||+.... ...+... ...+.+.+++..+
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~~----------~~~~~~i~~t~~~~~~~~~l~~r---~~~i~l~~l~~~e 189 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEEP----------PEHVKFLLATTDPQKLPVTILSR---CLQFHLKALDVEQ 189 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHSC----------CTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCCHHH
T ss_pred ceEEEEECcccccHHHHHHHHHHHhcC----------CCceEEEEEeCChHhCCHHHHHH---hhhccCCCCCHHH
Confidence 899999999886555666776666442 456778888865432 1222222 2456677776554
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.33 E-value=9.2e-07 Score=80.42 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=68.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccC------CCceEEEEeCCCCCHHHHHHHHHHhhcC-------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIEN------FDKRIWVCVSDPFDEFRIAKAIIEGLEG------------------- 179 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~~~~~i~~~~~~------------------- 179 (297)
.-|+|++|+||||||+.+++. .... --..+|++.....+...++..++.+++.
T Consensus 47 vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 124 (387)
T 2v1u_A 47 ALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR 124 (387)
T ss_dssp EEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 458899999999999999984 3221 1235677766655655555555544432
Q ss_pred ---CCceEEEEEeCCCCCCcc--CHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH----HHHHHHHhhCCCccccC
Q 043781 180 ---SEKKFFLILDDVWTDDYS--KWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE----KLRHLTLTLGLRAKFPV 250 (297)
Q Consensus 180 ---~~kr~LiVlDdv~~~~~~--~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~----~~~~v~~~~~~~~~~~l 250 (297)
.+++.+||||+++..... ..+.+...+... ... . ...+..+|.||+... ....+...++. ..+.+
T Consensus 125 l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~---~-~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~-~~i~l 198 (387)
T 2v1u_A 125 LSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRIN-QEL---G-DRVWVSLVGITNSLGFVENLEPRVKSSLGE-VELVF 198 (387)
T ss_dssp HTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGG-GCC---------CEEEEECSCSTTSSSSCHHHHTTTTS-EECCB
T ss_pred HhccCCeEEEEEccHhhhcccCCCChHHHhHhhch-hhc---C-CCceEEEEEEECCCchHhhhCHHHHhcCCC-eEEee
Confidence 267999999999775321 122233333211 000 0 033456777776431 12233333332 35677
Q ss_pred Cccchhh
Q 043781 251 SIFDAKK 257 (297)
Q Consensus 251 ~~l~~~~ 257 (297)
.+++..+
T Consensus 199 ~~l~~~~ 205 (387)
T 2v1u_A 199 PPYTAPQ 205 (387)
T ss_dssp CCCCHHH
T ss_pred CCCCHHH
Confidence 7776554
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.32 E-value=3.2e-07 Score=83.71 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=69.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccC--------CCceEEEEeCCCC-CHHHHHHHHHHhhcCC---------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIEN--------FDKRIWVCVSDPF-DEFRIAKAIIEGLEGS--------------- 180 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------------- 180 (297)
.-|+|++|+|||+||+.+++. .... ....+|++.+... +...++..++.++.+.
T Consensus 48 vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 125 (384)
T 2qby_B 48 NLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDK 125 (384)
T ss_dssp EEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 458899999999999999984 3111 2345677765555 5666666666555100
Q ss_pred ------CceEEEEEeCCCCCCccCHHHH-HHHHhhhhhhhceeeecCCCCeEEEEeccHH----HHHHHHHhhCCCcccc
Q 043781 181 ------EKKFFLILDDVWTDDYSKWEPF-HNCLMRVLQEFAAIEVDGDENPLSLTSTCQE----KLRHLTLTLGLRAKFP 249 (297)
Q Consensus 181 ------~kr~LiVlDdv~~~~~~~w~~l-~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~----~~~~v~~~~~~~~~~~ 249 (297)
.++.+|||||++......+..+ ...+.+. ..+..+|+||+... ....+...++ ..+.
T Consensus 126 l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~----------~~~~~iI~~t~~~~~~~~l~~~l~sr~~--~~i~ 193 (384)
T 2qby_B 126 IKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS----------DANISVIMISNDINVRDYMEPRVLSSLG--PSVI 193 (384)
T ss_dssp HHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS----------SSCEEEEEECSSTTTTTTSCHHHHHTCC--CEEE
T ss_pred HHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC----------CcceEEEEEECCCchHhhhCHHHHhcCC--CeEE
Confidence 2334999999977532222233 3344332 25677888887542 1223333333 2667
Q ss_pred CCccchhh
Q 043781 250 VSIFDAKK 257 (297)
Q Consensus 250 l~~l~~~~ 257 (297)
+.+++..+
T Consensus 194 l~~l~~~~ 201 (384)
T 2qby_B 194 FKPYDAEQ 201 (384)
T ss_dssp ECCCCHHH
T ss_pred ECCCCHHH
Confidence 77776554
No 11
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=9.4e-07 Score=78.45 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=70.5
Q ss_pred ccccccCCcchHHHHHHHhccccccc-CCC-ceEEEEeCCCCCHHHHHHHHHHhhc-----C-CCceEEEEEeCCCCCCc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIE-NFD-KRIWVCVSDPFDEFRIAKAIIEGLE-----G-SEKKFFLILDDVWTDDY 196 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~i~~~~~-----~-~~kr~LiVlDdv~~~~~ 196 (297)
.-++|++|+|||++|+.+++. +.. .+. ..+++..+.......+ ++++..+. . .+++.+|||||++....
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred EEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHHH-HHHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence 458899999999999999884 211 111 2344444444444333 33444332 1 25689999999988754
Q ss_pred cCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhh
Q 043781 197 SKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 197 ~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
..++.|...+... ..++.+|+||+.... ...+... ...+.+.+++..++
T Consensus 122 ~~~~~L~~~le~~----------~~~~~~il~~~~~~~l~~~l~sr---~~~i~~~~~~~~~~ 171 (323)
T 1sxj_B 122 GAQQALRRTMELY----------SNSTRFAFACNQSNKIIEPLQSQ---CAILRYSKLSDEDV 171 (323)
T ss_dssp HHHHTTHHHHHHT----------TTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCCHHHH
T ss_pred HHHHHHHHHHhcc----------CCCceEEEEeCChhhchhHHHhh---ceEEeecCCCHHHH
Confidence 5666676666542 456778888764321 1222222 23667777766554
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.21 E-value=3e-06 Score=77.18 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=76.1
Q ss_pred ccccccCCcchHHHHHHHhcccccccCC-CceEEEEeCCCCCHHHHHHHHHHhhcCC----------------------C
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDEFRIAKAIIEGLEGS----------------------E 181 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~~~~~----------------------~ 181 (297)
.-|+|++|+|||||++.+.+. ..... -..+|+..+...+...++..++..++.. +
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 124 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD 124 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcC
Confidence 458999999999999999984 33321 2456777777777777777777766431 4
Q ss_pred ceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHH----HHHhhCCCccccCCccchhh
Q 043781 182 KKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRH----LTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 182 kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~----v~~~~~~~~~~~l~~l~~~~ 257 (297)
++.+||||+++..+......|...+... .. ....+..+|++|+..+.... +...++. ..+.+.+++..+
T Consensus 125 ~~~vlilDE~~~l~~~~~~~L~~~~~~~-~~-----~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~-~~i~~~pl~~~~ 197 (389)
T 1fnn_A 125 LYMFLVLDDAFNLAPDILSTFIRLGQEA-DK-----LGAFRIALVIVGHNDAVLNNLDPSTRGIMGK-YVIRFSPYTKDQ 197 (389)
T ss_dssp CCEEEEEETGGGSCHHHHHHHHHHTTCH-HH-----HSSCCEEEEEEESSTHHHHTSCHHHHHHHTT-CEEECCCCBHHH
T ss_pred CeEEEEEECccccchHHHHHHHHHHHhC-CC-----CCcCCEEEEEEECCchHHHHhCHHhhhcCCC-ceEEeCCCCHHH
Confidence 6889999999887544444454444221 00 00145677778775532222 2223332 346777776554
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.18 E-value=2.8e-06 Score=76.05 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=23.7
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeC
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 161 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 161 (297)
..-|+|++|+|||||++.+.+. . . .+|+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~ 63 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCR 63 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEee
Confidence 3458899999999999999884 2 1 5677654
No 14
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.17 E-value=5.4e-06 Score=67.18 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=41.1
Q ss_pred ccccccCCcchHHHHHHHhcccccc---c--CCCceEEEEeCC----CC---CHHHHHHHHHHhhcCCCceEEEEEeCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVI---E--NFDKRIWVCVSD----PF---DEFRIAKAIIEGLEGSEKKFFLILDDVW 192 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~---~--~F~~~~wv~vs~----~~---~~~~~~~~i~~~~~~~~kr~LiVlDdv~ 192 (297)
.-|+|.+|+|||+||+.+++.-.-. . .....+++..+. .. .....+..++..+...++..+|||||+.
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~ 125 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELH 125 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGG
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHH
Confidence 3488999999999999998842110 0 112233443211 11 1223344555544434678899999997
Q ss_pred CC
Q 043781 193 TD 194 (297)
Q Consensus 193 ~~ 194 (297)
..
T Consensus 126 ~l 127 (195)
T 1jbk_A 126 TM 127 (195)
T ss_dssp GG
T ss_pred HH
Confidence 65
No 15
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.15 E-value=4.6e-07 Score=82.29 Aligned_cols=122 Identities=11% Similarity=0.134 Sum_probs=65.6
Q ss_pred cccccccCCcchHHHHHHHhcccccccCC---CceEEEEeCCCCC----------------------HHHHHHHHHHhhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENF---DKRIWVCVSDPFD----------------------EFRIAKAIIEGLE 178 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~----------------------~~~~~~~i~~~~~ 178 (297)
..-|+|++|+|||||++.+++. ....+ -..+|+..+...+ ..++...+...+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 124 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR 124 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 3458899999999999999983 43332 2456666443323 3333444444443
Q ss_pred CCCceEEEEEeCCCCCC----ccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH----HHHHHHhhCCCccccC
Q 043781 179 GSEKKFFLILDDVWTDD----YSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK----LRHLTLTLGLRAKFPV 250 (297)
Q Consensus 179 ~~~kr~LiVlDdv~~~~----~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~----~~~v~~~~~~~~~~~l 250 (297)
..+++.+||||+++... .+.+..+...+... ...+..+|+||+.... ...+...+.. ..+.+
T Consensus 125 ~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~---------~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~-~~i~l 194 (386)
T 2qby_A 125 DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV---------NKSKISFIGITNDVKFVDLLDPRVKSSLSE-EEIIF 194 (386)
T ss_dssp TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC---------CC--EEEEEEESCGGGGGGCTTHHHHTTTT-EEEEE
T ss_pred ccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc---------CCCeEEEEEEECCCChHhhhCHHHhccCCC-eeEEe
Confidence 33569999999997642 11222232222110 1334566777775432 1222233321 35677
Q ss_pred Cccchhh
Q 043781 251 SIFDAKK 257 (297)
Q Consensus 251 ~~l~~~~ 257 (297)
.+++..+
T Consensus 195 ~~l~~~~ 201 (386)
T 2qby_A 195 PPYNAEE 201 (386)
T ss_dssp CCCCHHH
T ss_pred CCCCHHH
Confidence 7776554
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=2e-06 Score=76.42 Aligned_cols=119 Identities=14% Similarity=0.088 Sum_probs=66.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccC-C-CceEEEEeCCCCCHHH---HHHHHHHhhcCC-CceEEEEEeCCCCCCccC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIEN-F-DKRIWVCVSDPFDEFR---IAKAIIEGLEGS-EKKFFLILDDVWTDDYSK 198 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~---~~~~i~~~~~~~-~kr~LiVlDdv~~~~~~~ 198 (297)
.-++|++|+||||+|+.+++. +... + ...+.+..+....... .+.......... +++.+||+|+++......
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~ 126 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 126 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHH
Confidence 347899999999999999984 2211 1 1223344333212221 222222211111 578899999998875556
Q ss_pred HHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhh
Q 043781 199 WEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 199 w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
++.|...+... ..++++|+||..... ...+.... ..+.+.+++..++
T Consensus 127 ~~~L~~~le~~----------~~~~~~i~~~~~~~~l~~~l~sr~---~~~~~~~l~~~~~ 174 (327)
T 1iqp_A 127 QQALRRTMEMF----------SSNVRFILSCNYSSKIIEPIQSRC---AIFRFRPLRDEDI 174 (327)
T ss_dssp HHHHHHHHHHT----------TTTEEEEEEESCGGGSCHHHHHTE---EEEECCCCCHHHH
T ss_pred HHHHHHHHHhc----------CCCCeEEEEeCCccccCHHHHhhC---cEEEecCCCHHHH
Confidence 66677666542 456788888865432 12222222 2456666665553
No 17
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.08 E-value=1.8e-05 Score=70.91 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=24.9
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeC
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 161 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 161 (297)
..-|+|++|+|||+|++.+.+. ... ..+|+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~ 64 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLR 64 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGG
T ss_pred cEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEch
Confidence 4568899999999999999884 222 24677655
No 18
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.08 E-value=6.2e-06 Score=77.25 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=66.3
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCC--ceEEEEeCCCCCHHHHHHHHHHhhcCC---------C-ceEEEEEeCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFD--KRIWVCVSDPFDEFRIAKAIIEGLEGS---------E-KKFFLILDDVW 192 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~-kr~LiVlDdv~ 192 (297)
.-|+|.+|+||||||+.+++ .....+. ..++++. ..+..++...+... . +.-+|+|||+.
T Consensus 133 lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~ 204 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQ 204 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGG
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcc
Confidence 45889999999999999998 3433332 2344433 23333333333221 3 67799999998
Q ss_pred CCCc--cCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-----HHHHHHHhhCCCccccCCccchhh
Q 043781 193 TDDY--SKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-----KLRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 193 ~~~~--~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-----~~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
.... ...+.+...+... ...|..||+||.... ....+...+....++.+.+++.++
T Consensus 205 ~l~~~~~~q~~l~~~l~~l---------~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 205 FLIGKTGVQTELFHTFNEL---------HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_dssp GGSSCHHHHHHHHHHHHHH---------HTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHH
T ss_pred cccCChHHHHHHHHHHHHH---------HHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHH
Confidence 7532 1223344444332 156788999987531 124444444323455666665444
No 19
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.07 E-value=3.6e-06 Score=68.67 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=52.9
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTDD 195 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~~ 195 (297)
..++|++|+|||||++.+++.......+ ..+++ +..++...+....... .+.-+|||||++...
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~ 113 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSER 113 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCc
Confidence 4689999999999999999842212222 22334 3344444333222211 356799999998532
Q ss_pred ccCHHH--HHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 196 YSKWEP--FHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 196 ~~~w~~--l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
.+.|.. +...+... ...|..+|+||..
T Consensus 114 ~~~~~~~~l~~ll~~~---------~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 114 LSDWQRELISYIITYR---------YNNLKSTIITTNY 142 (180)
T ss_dssp CCHHHHHHHHHHHHHH---------HHTTCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHH---------HHcCCCEEEEcCC
Confidence 244542 33334322 1467788998863
No 20
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.04 E-value=4.3e-06 Score=69.41 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=50.1
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTDD 195 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~~ 195 (297)
.-|+|.+|+|||+||+.+++. ........++++.+ .+...+....... .+.-+|||||++...
T Consensus 57 ~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~ 128 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEA 128 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC-
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCc
Confidence 458899999999999999984 43333445666532 3333332221110 122399999997753
Q ss_pred ccCHHH--HH-HHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 196 YSKWEP--FH-NCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 196 ~~~w~~--l~-~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
...|.+ +- ..+... ...+.++|+||..
T Consensus 129 ~~~~~~~~ll~~~l~~~---------~~~~~~~i~tsn~ 158 (202)
T 2w58_A 129 MSSWVRDDVFGPILQYR---------MFENLPTFFTSNF 158 (202)
T ss_dssp --CCGGGTTHHHHHHHH---------HHTTCCEEEEESS
T ss_pred CCHHHHHHHHHHHHHHH---------HhCCCCEEEEcCC
Confidence 344432 22 233221 0345678888873
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.94 E-value=5.3e-06 Score=70.14 Aligned_cols=89 Identities=21% Similarity=0.199 Sum_probs=50.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccC--HHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSK--WEPF 202 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~--w~~l 202 (297)
.-|+|++|+||||||+.+++. .........|+..+.... .+..++..+ .+.-+|||||+....... .+.+
T Consensus 55 ~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~vliiDe~~~~~~~~~~~~~l 126 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHAS---ISTALLEGL---EQFDLICIDDVDAVAGHPLWEEAI 126 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGG---SCGGGGTTG---GGSSEEEEETGGGGTTCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHH---HHHHHHHhc---cCCCEEEEeccccccCCHHHHHHH
Confidence 348899999999999999884 333333456666543211 011111222 456799999998764322 3334
Q ss_pred HHHHhhhhhhhceeeecCCCC-eEEEEec
Q 043781 203 HNCLMRVLQEFAAIEVDGDEN-PLSLTST 230 (297)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~gs-~iiiTTr 230 (297)
...+.... ..+. ++|+||+
T Consensus 127 ~~~l~~~~---------~~~~~~ii~~~~ 146 (242)
T 3bos_A 127 FDLYNRVA---------EQKRGSLIVSAS 146 (242)
T ss_dssp HHHHHHHH---------HHCSCEEEEEES
T ss_pred HHHHHHHH---------HcCCCeEEEEcC
Confidence 44443321 2223 4788776
No 22
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.92 E-value=8.6e-06 Score=72.80 Aligned_cols=115 Identities=23% Similarity=0.152 Sum_probs=61.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTDD 195 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~~ 195 (297)
.-|+|++|+||||||+.+++. ....-...++++. .++...+...+... .+.-+|+|||+....
T Consensus 40 lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred EEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc
Confidence 348899999999999999984 3221112344532 23333333222111 236799999998753
Q ss_pred cc--CHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccH-----HHHHHHHHhhCCCccccCCccchhh
Q 043781 196 YS--KWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ-----EKLRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 196 ~~--~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~-----~~~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
.. ..+.+...+... ...|..||+||... .....+...+....++.+.+ +.++
T Consensus 112 ~~~~~~~~l~~~l~~~---------~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e 170 (324)
T 1l8q_A 112 GKERTQIEFFHIFNTL---------YLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKT 170 (324)
T ss_dssp TCHHHHHHHHHHHHHH---------HHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHH
T ss_pred CChHHHHHHHHHHHHH---------HHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHH
Confidence 21 223344444322 14566788887533 12344444443333455655 5443
No 23
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.80 E-value=3.5e-05 Score=62.20 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=39.2
Q ss_pred cccccCCcchHHHHHHHhcccccccC------CC-ceEEEEeCCC-----C--CHHHHHHHHHHhhcCCCceEEEEEeCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIEN------FD-KRIWVCVSDP-----F--DEFRIAKAIIEGLEGSEKKFFLILDDV 191 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~------F~-~~~wv~vs~~-----~--~~~~~~~~i~~~~~~~~kr~LiVlDdv 191 (297)
-|+|.+|+|||+||+.+.+. .... .. ..+++..+.. . .....+..++..+...++..+|||||+
T Consensus 47 ll~G~~G~GKT~la~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~ 124 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAIK--IVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEI 124 (187)
T ss_dssp EEESCGGGCHHHHHHHHHHH--HHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTG
T ss_pred EEECCCCCCHHHHHHHHHHH--HHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCH
Confidence 48899999999999999874 2110 11 2223322110 0 112234444444444356789999999
Q ss_pred CCC
Q 043781 192 WTD 194 (297)
Q Consensus 192 ~~~ 194 (297)
...
T Consensus 125 ~~l 127 (187)
T 2p65_A 125 HTV 127 (187)
T ss_dssp GGG
T ss_pred HHh
Confidence 764
No 24
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.68 E-value=6.9e-05 Score=67.75 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=65.1
Q ss_pred cccccCCcchHHHHHHHhcccccccCC-------------------CceEEEEeCCCCCHHHHHHHHHHhhcC---CCce
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENF-------------------DKRIWVCVSDPFDEFRIAKAIIEGLEG---SEKK 183 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F-------------------~~~~wv~vs~~~~~~~~~~~i~~~~~~---~~kr 183 (297)
-++|++|+||||+|+.+.+.......+ ...+.+..+..... +-.+.++..+.. .+++
T Consensus 42 ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~ 120 (373)
T 1jr3_A 42 LFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRF 120 (373)
T ss_dssp EEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCS-SCHHHHHHHTTSCCSSSSS
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCH-HHHHHHHHHHhhccccCCe
Confidence 478999999999999998742211110 01233333321111 112334444332 2678
Q ss_pred EEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhh
Q 043781 184 FFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 184 ~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
.+||+||+.......++.|...+... ..+..+|++|..... ...+... ...+.+.+++..++
T Consensus 121 ~vliiDe~~~l~~~~~~~Ll~~le~~----------~~~~~~Il~~~~~~~l~~~l~sr---~~~i~~~~l~~~~~ 183 (373)
T 1jr3_A 121 KVYLIDEVHMLSRHSFNALLKTLEEP----------PEHVKFLLATTDPQKLPVTILSR---CLQFHLKALDVEQI 183 (373)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHSC----------CSSEEEEEEESCGGGSCHHHHTT---SEEEECCCCCHHHH
T ss_pred EEEEEECcchhcHHHHHHHHHHHhcC----------CCceEEEEEeCChHhCcHHHHhh---eeEeeCCCCCHHHH
Confidence 89999999876545566666666431 345567777754321 1222211 24566777765554
No 25
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.67 E-value=8.2e-05 Score=58.45 Aligned_cols=86 Identities=13% Similarity=-0.044 Sum_probs=49.9
Q ss_pred cccccCCcchHHHHHHHhccccc-ccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDV-IENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
-|+|.+|+|||+||+.+++...- ...| + +..+...+... ....+... ..-.|+||++.....+....|..
T Consensus 28 ll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~~~-~~~~~~~a----~~g~l~ldei~~l~~~~q~~Ll~ 98 (145)
T 3n70_A 28 WLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNAPQ-LNDFIALA----QGGTLVLSHPEHLTREQQYHLVQ 98 (145)
T ss_dssp EEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTSSC-HHHHHHHH----TTSCEEEECGGGSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcchh-hhcHHHHc----CCcEEEEcChHHCCHHHHHHHHH
Confidence 48899999999999999984211 2222 2 54443322111 11222222 22478999998875444555555
Q ss_pred HHhhhhhhhceeeecCCCCeEEEEec
Q 043781 205 CLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 205 ~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
.+... ....++|.||.
T Consensus 99 ~l~~~----------~~~~~~I~~t~ 114 (145)
T 3n70_A 99 LQSQE----------HRPFRLIGIGD 114 (145)
T ss_dssp HHHSS----------SCSSCEEEEES
T ss_pred HHhhc----------CCCEEEEEECC
Confidence 55321 34467777775
No 26
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.67 E-value=4.3e-05 Score=71.65 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=42.9
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhc---CCCceEEEEEeCCCCCCccCHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE---GSEKKFFLILDDVWTDDYSKWEP 201 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~---~~~kr~LiVlDdv~~~~~~~w~~ 201 (297)
.-++|.+|+||||||+.+.+. ....| .-+.. ......++ +.++.... ..+++.+|+||++........+.
T Consensus 53 vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a-~~~~~~~i-r~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~ 125 (447)
T 3pvs_A 53 MILWGPPGTGKTTLAEVIARY--ANADV---ERISA-VTSGVKEI-REAIERARQNRNAGRRTILFVDEVHRFNKSQQDA 125 (447)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--TTCEE---EEEET-TTCCHHHH-HHHHHHHHHHHHTTCCEEEEEETTTCC------C
T ss_pred EEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEe-ccCCHHHH-HHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHH
Confidence 358899999999999999983 43333 12222 12233332 22222211 12678999999998876556666
Q ss_pred HHHHHh
Q 043781 202 FHNCLM 207 (297)
Q Consensus 202 l~~~l~ 207 (297)
|...+.
T Consensus 126 LL~~le 131 (447)
T 3pvs_A 126 FLPHIE 131 (447)
T ss_dssp CHHHHH
T ss_pred HHHHHh
Confidence 666664
No 27
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00017 Score=64.49 Aligned_cols=121 Identities=8% Similarity=-0.003 Sum_probs=67.5
Q ss_pred cccccCCcchHHHHHHHhccccccc------CCCceEEEEeCCCCCHHHHHHHHHHhhcCC-------------------
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIE------NFDKRIWVCVSDPFDEFRIAKAIIEGLEGS------------------- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~------~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~------------------- 180 (297)
-|+|++|+|||++++.+.+.-.... .| ..+.++.....+...++..|++++.+.
T Consensus 49 li~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~ 127 (318)
T 3te6_A 49 YITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP 127 (318)
T ss_dssp EEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh
Confidence 3789999999999999998532111 12 345566555556666666666666321
Q ss_pred ---CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEE--EEeccHH-----HHHHHHHhhCCCccccC
Q 043781 181 ---EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLS--LTSTCQE-----KLRHLTLTLGLRAKFPV 250 (297)
Q Consensus 181 ---~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~ii--iTTr~~~-----~~~~v~~~~~~~~~~~l 250 (297)
+++++|+||++..-. .-+.|...+... ....++++ .++...+ ....+...++. ..+.+
T Consensus 128 ~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~---------~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~-~~i~F 195 (318)
T 3te6_A 128 KAKKRKTLILIQNPENLL--SEKILQYFEKWI---------SSKNSKLSIICVGGHNVTIREQINIMPSLKAHF-TEIKL 195 (318)
T ss_dssp GGGSCEEEEEEECCSSSC--CTHHHHHHHHHH---------HCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTE-EEEEC
T ss_pred hccCCceEEEEecHHHhh--cchHHHHHHhcc---------cccCCcEEEEEEecCcccchhhcchhhhccCCc-eEEEe
Confidence 568999999998763 223343333211 12334332 2332211 12223344542 45678
Q ss_pred Cccchhhhh
Q 043781 251 SIFDAKKIW 259 (297)
Q Consensus 251 ~~l~~~~lf 259 (297)
.+++..++.
T Consensus 196 ~pYt~~el~ 204 (318)
T 3te6_A 196 NKVDKNELQ 204 (318)
T ss_dssp CCCCHHHHH
T ss_pred CCCCHHHHH
Confidence 888877764
No 28
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=4.7e-05 Score=67.77 Aligned_cols=119 Identities=14% Similarity=0.020 Sum_probs=76.3
Q ss_pred ccccCCcchHHHHHHHhccc-ccc-cCCCceEEEEeCC-CCCHHHHHHHHHHhhcCC---CceEEEEEeCCCCCCccCHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDK-DVI-ENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGS---EKKFFLILDDVWTDDYSKWE 200 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~-~~~-~~F~~~~wv~vs~-~~~~~~~~~~i~~~~~~~---~kr~LiVlDdv~~~~~~~w~ 200 (297)
++|++|+||||+|+.+.+.. ... .+.+ ...+..+. ...+.++ +++.+.+... +++-++|+|++.....+..+
T Consensus 23 f~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p~~~~~kvviIdead~lt~~a~n 100 (305)
T 2gno_A 23 INGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSPELYTRKYVIVHDCERMTQQAAN 100 (305)
T ss_dssp EECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhccccCCceEEEeccHHHhCHHHHH
Confidence 78999999999999998731 111 2333 34555443 4555443 3455555332 67889999999987666777
Q ss_pred HHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHHhhCCCccccCCccchhhhhhh
Q 043781 201 PFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTLTLGLRAKFPVSIFDAKKIWGW 261 (297)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~~~~~~~~~~l~~l~~~~lf~~ 261 (297)
.|...+... .+.+.+|++|...+ .+..+.... ++++.+++..++..|
T Consensus 101 aLLk~LEep----------~~~t~fIl~t~~~~---kl~~tI~SR-~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 101 AFLKALEEP----------PEYAVIVLNTRRWH---YLLPTIKSR-VFRVVVNVPKEFRDL 147 (305)
T ss_dssp HTHHHHHSC----------CTTEEEEEEESCGG---GSCHHHHTT-SEEEECCCCHHHHHH
T ss_pred HHHHHHhCC----------CCCeEEEEEECChH---hChHHHHce-eEeCCCCCHHHHHHH
Confidence 787777642 45677777775432 344444444 788888887776444
No 29
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.62 E-value=0.00022 Score=63.79 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=40.3
Q ss_pred ccccccCCcchHHHHHHHhccccc-ccCCCceEEEEeCCCC-----CHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDV-IENFDKRIWVCVSDPF-----DEFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~-----~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
.-++|++|+|||+||+.+++. . ...| +.+..+.-. .....++.++..... .+..+|+||++...
T Consensus 48 iLL~GppGtGKT~la~ala~~--~~~~~~---~~i~~~~l~~~~~g~~~~~~~~lf~~a~~-~~~~vl~iDEid~l 117 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAKAVATE--ANNSTF---FSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSL 117 (322)
T ss_dssp EEEESSSSSCHHHHHHHHHHH--TTSCEE---EEEECCSSCCSSCCSCHHHHHHHHHHHHH-TSSEEEEEETTTGG
T ss_pred EEEECCCCccHHHHHHHHHHH--cCCCcE---EEEEhHHHHhhhhhHHHHHHHHHHHHHHh-cCCcEEEeecHHHh
Confidence 447899999999999999983 3 2122 223322211 224455555554433 46789999999754
No 30
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.56 E-value=7.1e-05 Score=58.70 Aligned_cols=85 Identities=9% Similarity=0.049 Sum_probs=50.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
+-|+|.+|+|||++|+.+.+.. . -++.+.-..-.......++... +.-.|+||++.....+....|..
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~--~------~~~~~~~~~~~~~~~~~~~~~a----~~~~l~lDei~~l~~~~q~~Ll~ 97 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG--T------PWVSPARVEYLIDMPMELLQKA----EGGVLYVGDIAQYSRNIQTGITF 97 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT--S------CEECCSSTTHHHHCHHHHHHHT----TTSEEEEEECTTCCHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhC--C------CeEEechhhCChHhhhhHHHhC----CCCeEEEeChHHCCHHHHHHHHH
Confidence 3488999999999999999842 2 2232222211122234444443 23478999998875444555555
Q ss_pred HHhhhhhhhceeeecCCCCeEEEEec
Q 043781 205 CLMRVLQEFAAIEVDGDENPLSLTST 230 (297)
Q Consensus 205 ~l~~~~~~~~~~~~~~~gs~iiiTTr 230 (297)
.+... ...+.++|.||.
T Consensus 98 ~l~~~---------~~~~~~iI~~tn 114 (143)
T 3co5_A 98 IIGKA---------ERCRVRVIASCS 114 (143)
T ss_dssp HHHHH---------TTTTCEEEEEEE
T ss_pred HHHhC---------CCCCEEEEEecC
Confidence 55442 134567888775
No 31
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.54 E-value=2.7e-05 Score=68.81 Aligned_cols=120 Identities=15% Similarity=0.032 Sum_probs=64.3
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCC-ceEEEEeCCCCC---HHHHHHHHHHhhcCC-CceEEEEEeCCCCCCccCH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFD---EFRIAKAIIEGLEGS-EKKFFLILDDVWTDDYSKW 199 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~---~~~~~~~i~~~~~~~-~kr~LiVlDdv~~~~~~~w 199 (297)
.-++|++|+|||++|+.+.+.-. ...+. ..+.++.+.... +.+.+.......... +++-++|+|++........
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHH
Confidence 45889999999999999988411 11111 123344443322 233334443222222 5688999999977643333
Q ss_pred HHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhh
Q 043781 200 EPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
+.|...+.. ...+..+|+||..... ...+... ...+.+.+++..++
T Consensus 120 ~~L~~~le~----------~~~~~~~i~~~~~~~~l~~~l~sr---~~~i~~~~~~~~~~ 166 (319)
T 2chq_A 120 AALRRTMEM----------YSKSCRFILSCNYVSRIIEPIQSR---CAVFRFKPVPKEAM 166 (319)
T ss_dssp HTTGGGTSS----------SSSSEEEEEEESCGGGSCHHHHTT---CEEEECCCCCHHHH
T ss_pred HHHHHHHHh----------cCCCCeEEEEeCChhhcchHHHhh---CeEEEecCCCHHHH
Confidence 444333322 1355677777764331 2222222 13566777765554
No 32
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.52 E-value=0.00021 Score=64.18 Aligned_cols=120 Identities=12% Similarity=0.025 Sum_probs=71.6
Q ss_pred ccccCCcchHHHHHHHhcccccc--------------------cCCCceEEEEeC---CCCCHHHHHHHHHHhhcCC---
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVI--------------------ENFDKRIWVCVS---DPFDEFRIAKAIIEGLEGS--- 180 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs---~~~~~~~~~~~i~~~~~~~--- 180 (297)
++|++|+|||++|+.+.+.-.-. .|++ ..++... ....+.++ +++.+.+...
T Consensus 29 ~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~i~~i-r~l~~~~~~~~~~ 106 (334)
T 1a5t_A 29 IQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLGVDAV-REVTEKLNEHARL 106 (334)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBCHHHH-HHHHHHTTSCCTT
T ss_pred EECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCCHHHH-HHHHHHHhhcccc
Confidence 78999999999999887731111 1233 2344432 33455443 4566655432
Q ss_pred CceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhhh
Q 043781 181 EKKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKIW 259 (297)
Q Consensus 181 ~kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~lf 259 (297)
+++-++|+|++.....+..+.|...+..- ..+..+|++|...+ ....+-.. ...+.+.+++..++.
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep----------~~~~~~Il~t~~~~~l~~ti~SR---c~~~~~~~~~~~~~~ 173 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEP----------PAETWFFLATREPERLLATLRSR---CRLHYLAPPPEQYAV 173 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSC----------CTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCCHHHHH
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCC----------CCCeEEEEEeCChHhCcHHHhhc---ceeeeCCCCCHHHHH
Confidence 67889999999887545556666666431 44566777776543 22222222 246778888777654
Q ss_pred hh
Q 043781 260 GW 261 (297)
Q Consensus 260 ~~ 261 (297)
.|
T Consensus 174 ~~ 175 (334)
T 1a5t_A 174 TW 175 (334)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 33
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.51 E-value=0.00011 Score=65.57 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=39.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeC----CCC-CHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPF-DEFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
.-++|++|+|||+||+.+++. ....| +.+..+ ... .....++.++..... .+..+|+||++...
T Consensus 54 vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l 122 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSSDLVSKWMGESEKLVKQLFAMARE-NKPSIIFIDQVDAL 122 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHHHHHTTTGGGHHHHHHHHHHHHHH-TSSEEEEEECGGGG
T ss_pred EEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchHHHhhcccchHHHHHHHHHHHHHh-cCCeEEEechhhhh
Confidence 358899999999999999983 33332 223321 111 233444555444433 46689999999754
No 34
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.50 E-value=9.9e-05 Score=58.48 Aligned_cols=85 Identities=16% Similarity=0.036 Sum_probs=49.2
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFH 203 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~ 203 (297)
...|+|..|+|||||++.+++.... ..+ ..+++....-... .+. .+.-+|||||+.......-+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~~~~~---------~~~--~~~~lLilDE~~~~~~~~~~~l~ 104 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAASMPLT---------DAA--FEAEYLAVDQVEKLGNEEQALLF 104 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTTSCCC---------GGG--GGCSEEEEESTTCCCSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHHhhHH---------HHH--hCCCEEEEeCccccChHHHHHHH
Confidence 3568999999999999999984321 111 2556655433221 111 24568899999775322222343
Q ss_pred HHHhhhhhhhceeeecCCCC-eEEEEec
Q 043781 204 NCLMRVLQEFAAIEVDGDEN-PLSLTST 230 (297)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~gs-~iiiTTr 230 (297)
..+.... ..|. .||+||+
T Consensus 105 ~li~~~~---------~~g~~~iiits~ 123 (149)
T 2kjq_A 105 SIFNRFR---------NSGKGFLLLGSE 123 (149)
T ss_dssp HHHHHHH---------HHTCCEEEEEES
T ss_pred HHHHHHH---------HcCCcEEEEECC
Confidence 4333221 2344 4888887
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.48 E-value=7.1e-05 Score=65.32 Aligned_cols=63 Identities=22% Similarity=0.250 Sum_probs=38.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CC-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PF-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
.-|+|++|+|||+||+.+++. ....| +.+..+. .. .....+..++..... .+..+|+||++..
T Consensus 54 ~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~ 121 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVKKFIGEGASLVKDIFKLAKE-KAPSIIFIDEIDA 121 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCCCSTTHHHHHHHHHHHHHHH-TCSEEEEEETTHH
T ss_pred EEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHHhccchHHHHHHHHHHHHHH-cCCeEEEEECHHH
Confidence 458899999999999999984 32222 2232221 11 123444455444433 4568999999965
No 36
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=0.00013 Score=65.50 Aligned_cols=121 Identities=13% Similarity=0.043 Sum_probs=64.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCC-ceEEEEeCCCCCHHHHHHHH---HHh-----------hcCCCceEEEEEe
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAI---IEG-----------LEGSEKKFFLILD 189 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i---~~~-----------~~~~~kr~LiVlD 189 (297)
.-++|++|+||||||+.+.+.-.....+. ....+..+.......+...+ ... ....++.-+|++|
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiD 140 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILD 140 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEET
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEE
Confidence 45889999999999999988421111121 12333444333333322211 111 0011456799999
Q ss_pred CCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHH-HHHHHHHhhCCCccccCCccchhhh
Q 043781 190 DVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQE-KLRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 190 dv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~-~~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
++........+.|...+... ....++|++|.... ....+.... ..+.+.+++..++
T Consensus 141 E~~~l~~~~~~~Ll~~le~~----------~~~~~~il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~ 197 (353)
T 1sxj_D 141 EADSMTADAQSALRRTMETY----------SGVTRFCLICNYVTRIIDPLASQC---SKFRFKALDASNA 197 (353)
T ss_dssp TGGGSCHHHHHHHHHHHHHT----------TTTEEEEEEESCGGGSCHHHHHHS---EEEECCCCCHHHH
T ss_pred CCCccCHHHHHHHHHHHHhc----------CCCceEEEEeCchhhCcchhhccC---ceEEeCCCCHHHH
Confidence 99876544555666666542 34566777765332 223333332 2456666665554
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.42 E-value=0.00018 Score=63.72 Aligned_cols=76 Identities=20% Similarity=0.117 Sum_probs=46.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
.-|+|++|+|||+||+.+++. .... ..++..+......++...+...+ .+..+|+||++..........|..
T Consensus 41 vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~~l~~~l~~~~---~~~~~l~lDEi~~l~~~~~~~L~~ 112 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPGDLAAILANSL---EEGDILFIDEIHRLSRQAEEHLYP 112 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHHHHHHHHTTTC---CTTCEEEETTTTSCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChHHHHHHHHHhc---cCCCEEEEECCcccccchHHHHHH
Confidence 458899999999999999883 3222 23454444444444443222212 456699999998775434445555
Q ss_pred HHhh
Q 043781 205 CLMR 208 (297)
Q Consensus 205 ~l~~ 208 (297)
.+..
T Consensus 113 ~l~~ 116 (324)
T 1hqc_A 113 AMED 116 (324)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.41 E-value=0.00045 Score=61.35 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=63.4
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHH---HHHhhcCCCceEEEEEeCCCCCC-ccCHHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA---IIEGLEGSEKKFFLILDDVWTDD-YSKWEPF 202 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~---i~~~~~~~~kr~LiVlDdv~~~~-~~~w~~l 202 (297)
+.|++|+|||++|+.+.+. ... ..+.++.+. .....+... ........+++-+|+||++.... .+..+.|
T Consensus 53 ~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L 126 (324)
T 3u61_B 53 HSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHL 126 (324)
T ss_dssp ECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHH
T ss_pred eeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHH
Confidence 5588999999999999883 321 234455443 333333222 22222222588999999998764 3455556
Q ss_pred HHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhh
Q 043781 203 HNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKK 257 (297)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~ 257 (297)
...+... ..+.++|+||..... ...+.... .++.+..++..+
T Consensus 127 ~~~le~~----------~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e 169 (324)
T 3u61_B 127 RSFMEAY----------SSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDED 169 (324)
T ss_dssp HHHHHHH----------GGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHH
T ss_pred HHHHHhC----------CCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHH
Confidence 6555442 345778888764331 12222222 346666666443
No 39
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.39 E-value=0.00012 Score=65.22 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=36.5
Q ss_pred ccccccCCcchHHHHHHHhcccccc-cCCCceEEEEeCCCCCHHHHHHHHHHhhcCC---------CceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------EKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~kr~LiVlDdv~~~ 194 (297)
.-++|.+|+|||+||..+++. .. ..--..+++++ .+++..+....... .+.-||||||+...
T Consensus 155 lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~------~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 155 LYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF------PSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH------HHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH------HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 347899999999999999984 32 22223445543 33444443322110 22348999999654
Q ss_pred CccCH
Q 043781 195 DYSKW 199 (297)
Q Consensus 195 ~~~~w 199 (297)
..+.|
T Consensus 227 ~~~~~ 231 (308)
T 2qgz_A 227 QATSW 231 (308)
T ss_dssp -----
T ss_pred CCCHH
Confidence 32344
No 40
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.38 E-value=0.00026 Score=63.58 Aligned_cols=64 Identities=5% Similarity=0.027 Sum_probs=39.3
Q ss_pred ceEEEEEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHH-HHHHHHhhCCCccccCCccchhhh
Q 043781 182 KKFFLILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEK-LRHLTLTLGLRAKFPVSIFDAKKI 258 (297)
Q Consensus 182 kr~LiVlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~-~~~v~~~~~~~~~~~l~~l~~~~l 258 (297)
+.-++|||++...+....+.|...+... ..+..+|++|...+. ...+.... ..+.+.+++..++
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~----------~~~~~~Il~t~~~~~l~~~l~sR~---~~~~~~~~~~~~~ 198 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKY----------SKNIRLIMVCDSMSPIIAPIKSQC---LLIRCPAPSDSEI 198 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHS----------TTTEEEEEEESCSCSSCHHHHTTS---EEEECCCCCHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhh----------cCCCEEEEEeCCHHHHHHHHHhhc---eEEecCCcCHHHH
Confidence 6679999999887655566676666542 456778888764321 22222221 4567777766654
No 41
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00075 Score=62.06 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=41.6
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CCC-HHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PFD-EFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
++|++|+|||.||+.+++ +...+| +.+..+. ... ....++.++..... ...++|++|++...
T Consensus 187 L~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~sk~vGese~~vr~lF~~Ar~-~aP~IIFiDEiDai 253 (405)
T 4b4t_J 187 LYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSI 253 (405)
T ss_dssp EESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSCSSTTHHHHHHHHHHHHHHH-TCSEEEEEESSSCC
T ss_pred EeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhccccchHHHHHHHHHHHHHH-hCCceEeeecchhh
Confidence 579999999999999999 344443 3344332 222 34556666655543 57899999999853
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.33 E-value=0.00014 Score=65.77 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-++|++|+|||+||+.+.+.
T Consensus 73 vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 73 VLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999984
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.26 E-value=0.00096 Score=62.32 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-++|++|+|||+||+.+++.
T Consensus 170 vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999984
No 44
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.22 E-value=0.00099 Score=56.96 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=37.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC-----HHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-----EFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-----~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
.-++|++|+|||+||+.+++. ...+| +.+..+.-.+ ....+..++..... ....+|+||++...
T Consensus 42 vll~G~~GtGKT~la~~la~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~vl~iDeid~l 110 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATE--AQVPF---LAMAGAEFVEVIGGLGAARVRSLFKEARA-RAPCIVYIDEIDAV 110 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHH--HTCCE---EEEETTTTSSSSTTHHHHHHHHHHHHHHH-TCSEEEEEECC---
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCCE---EEechHHHHhhccChhHHHHHHHHHHHHh-cCCeEEEEeCcchh
Confidence 348899999999999999983 33222 3344332211 12334444444332 35789999999764
No 45
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.22 E-value=0.00057 Score=60.11 Aligned_cols=93 Identities=16% Similarity=0.096 Sum_probs=49.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCC--ceEEEEeCC----CC-CHHHHHHHHHHhhcCCCceEEEEEeCCCCC---
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFD--KRIWVCVSD----PF-DEFRIAKAIIEGLEGSEKKFFLILDDVWTD--- 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~--~~~wv~vs~----~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~--- 194 (297)
.-++|.+|+|||+||+.+.+.-....... ..+.+..+. .+ ....-...++... +.-+|+||++...
T Consensus 70 vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~----~~~vl~iDEid~l~~~ 145 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA----MGGVLFIDEAYYLYRP 145 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH----TTSEEEEETGGGSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc----CCCEEEEEChhhhccC
Confidence 34889999999999998877321111111 122222111 11 1223334444444 2349999999843
Q ss_pred ------CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 195 ------DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 195 ------~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
.......|...+... ..+..+|+||..
T Consensus 146 ~~~~~~~~~~~~~Ll~~l~~~----------~~~~~~i~~~~~ 178 (309)
T 3syl_A 146 DNERDYGQEAIEILLQVMENN----------RDDLVVILAGYA 178 (309)
T ss_dssp C---CCTHHHHHHHHHHHHHC----------TTTCEEEEEECH
T ss_pred CCcccccHHHHHHHHHHHhcC----------CCCEEEEEeCCh
Confidence 222334454444432 445667777753
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.21 E-value=0.00026 Score=64.25 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=38.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeC----CCC-CHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPF-DEFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
.-++|++|+|||+||+.+++. ....| +.+..+ ... .....++.++..... .+..+|+||++...
T Consensus 87 iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~~l~~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l 155 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSSDLVSKWMGESEKLVKQLFAMARE-NKPSIIFIDQVDAL 155 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHHHHHSCC---CHHHHHHHHHHHHH-TSSEEEEEECGGGG
T ss_pred EEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHHHHhhhhcchHHHHHHHHHHHHHH-cCCeEEEEechHhh
Confidence 347899999999999999984 33222 222211 111 112334444443322 46789999999864
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.20 E-value=0.00044 Score=59.92 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=37.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC-C--CH---HHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-F--DE---FRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~--~~---~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
.-++|++|+|||+||+.+.+. ....| +.+..+.. + .. ...+..++..... .+..+|+||++..
T Consensus 67 vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~ 135 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDKMIGFSETAKCQAMKKIFDDAYK-SQLSCVVVDDIER 135 (272)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGGCTTCCHHHHHHHHHHHHHHHHT-SSEEEEEECCHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHHhcCCchHHHHHHHHHHHHHHHh-cCCcEEEEEChhh
Confidence 347899999999999999984 32222 22222211 1 11 1233344444322 4688999999865
No 48
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.20 E-value=0.00044 Score=62.06 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=54.6
Q ss_pred ccccccCCcchHHHHHHHhccccccc-CCC-ceEEEEeCCCCCHHHHHHHHHHhhc-----CCCceEEEEEeCCCCCCcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIE-NFD-KRIWVCVSDPFDEFRIAKAIIEGLE-----GSEKKFFLILDDVWTDDYS 197 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~i~~~~~-----~~~kr~LiVlDdv~~~~~~ 197 (297)
.-++|++|+||||+|+.+.+. +.. .+. ...-++.+.......+.. ++..+. ..+.+-++|+|++.....+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~ir~-~i~~~~~~~~~~~~~~~viiiDe~~~l~~~ 125 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDVVRN-QIKDFASTRQIFSKGFKLIILDEADAMTNA 125 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHHHHT-HHHHHHHBCCSSSCSCEEEEETTGGGSCHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHHHHH-HHHHHHhhcccCCCCceEEEEeCCCCCCHH
Confidence 358899999999999999884 211 111 122333444334444332 222221 1145788999999876545
Q ss_pred CHHHHHHHHhhhhhhhceeeecCCCCeEEEEecc
Q 043781 198 KWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTC 231 (297)
Q Consensus 198 ~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~ 231 (297)
..+.|...+... .....+|++|..
T Consensus 126 ~~~~L~~~le~~----------~~~~~~il~~n~ 149 (340)
T 1sxj_C 126 AQNALRRVIERY----------TKNTRFCVLANY 149 (340)
T ss_dssp HHHHHHHHHHHT----------TTTEEEEEEESC
T ss_pred HHHHHHHHHhcC----------CCCeEEEEEecC
Confidence 566676666542 345566666653
No 49
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.19 E-value=0.00047 Score=62.50 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=39.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-----CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-----DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
.-|+|++|+|||+||+.+++. .... .+.+..+.-. ......+.++..... .+..+|+||++..
T Consensus 120 vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~ 187 (357)
T 3d8b_A 120 ILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSKWVGEGEKMVRALFAVARC-QQPAVIFIDEIDS 187 (357)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCSSTTHHHHHHHHHHHHHHH-TCSEEEEEETHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhccccchHHHHHHHHHHHHHh-cCCeEEEEeCchh
Confidence 458899999999999999883 3222 2344433221 123444555544432 4678999999954
No 50
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.19 E-value=0.0014 Score=57.24 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=40.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC-----CCHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-----FDEFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
.-++|++|+||||||+.+.+. ....| +.+..+.- .......+.++..... .+..+|+||++...
T Consensus 57 vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l 125 (297)
T 3b9p_A 57 LLLFGPPGNGKTLLARAVATE--CSATF---LNISAASLTSKYVGDGEKLVRALFAVARH-MQPSIIFIDEVDSL 125 (297)
T ss_dssp EEEESSSSSCHHHHHHHHHHH--TTCEE---EEEESTTTSSSSCSCHHHHHHHHHHHHHH-TCSEEEEEETGGGT
T ss_pred EEEECcCCCCHHHHHHHHHHH--hCCCe---EEeeHHHHhhcccchHHHHHHHHHHHHHH-cCCcEEEeccHHHh
Confidence 358899999999999999983 32222 23443322 1234555555544433 46789999999764
No 51
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.16 E-value=0.00055 Score=60.00 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=40.2
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-------CHHHHHHHHHHhhcCC----CceEEEEEeCCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-------DEFRIAKAIIEGLEGS----EKKFFLILDDVWTD 194 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------~~~~~~~~i~~~~~~~----~kr~LiVlDdv~~~ 194 (297)
-++|.+|+|||+||+.+.+. .... .+.+..+.-. +....+..+.....+. +...+|+||++...
T Consensus 54 ll~G~~GtGKT~la~~la~~--l~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 54 LMIGPTGVGKTEIARRLAKL--ANAP---FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp EEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred EEECCCCCCHHHHHHHHHHH--hCCC---EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 47899999999999999883 3222 2333332211 1234455554433211 24679999999876
Q ss_pred Ccc
Q 043781 195 DYS 197 (297)
Q Consensus 195 ~~~ 197 (297)
...
T Consensus 129 ~~~ 131 (310)
T 1ofh_A 129 CKK 131 (310)
T ss_dssp SCC
T ss_pred Ccc
Confidence 433
No 52
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.16 E-value=0.00056 Score=61.03 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=42.3
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEe--CCC-----CCHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV--SDP-----FDEFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~-----~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
-|+|++|+||||||.++... .-...+|+++ +.. .+...++..+.+.+.. .+ |||+|++...
T Consensus 127 LI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~--~~-LLVIDsI~aL 194 (331)
T 2vhj_A 127 IVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HR-VIVIDSLKNV 194 (331)
T ss_dssp EEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CS-EEEEECCTTT
T ss_pred EEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh--CC-EEEEeccccc
Confidence 47899999999999998874 1113345555 111 3567777777776654 23 9999999865
No 53
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.04 E-value=0.00083 Score=61.51 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=37.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-----CHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-----DEFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
.-|+|.+|+|||+||+.+.+. ....| +.+..+.-. .....+..++..... .+..+|+||++...
T Consensus 151 vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~~~~g~~~~~~~~~~~~a~~-~~~~il~iDEid~l 219 (389)
T 3vfd_A 151 LLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTSKYVGEGEKLVRALFAVARE-LQPSIIFIDQVDSL 219 (389)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC-------CHHHHHHHHHHHHH-SSSEEEEEETGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhccccchHHHHHHHHHHHHHh-cCCeEEEEECchhh
Confidence 348899999999999999873 32222 223222211 112334444444332 35579999999643
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.03 E-value=0.00087 Score=58.94 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=45.9
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC---HHHHH------------HHHHHhhcCCCceEEEEEe
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD---EFRIA------------KAIIEGLEGSEKKFFLILD 189 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~---~~~~~------------~~i~~~~~~~~kr~LiVlD 189 (297)
.-++|.+|+|||+||+.+.+. ....-...+.+..+.... ...++ ..+...+.. ...-+|+||
T Consensus 50 ~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~lD 126 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFD 126 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH-CSSEEEEEE
T ss_pred EEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHh-CCCeEEEEe
Confidence 458899999999999999983 322112234444332211 11111 011111111 234699999
Q ss_pred CCCCCCccCHHHHHHHHhh
Q 043781 190 DVWTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 190 dv~~~~~~~w~~l~~~l~~ 208 (297)
++..........|...+..
T Consensus 127 Ei~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 127 AIEKAHPDVFNILLQMLDD 145 (311)
T ss_dssp TGGGSCHHHHHHHHHHHHH
T ss_pred ChhhcCHHHHHHHHHHHhc
Confidence 9988765566666666654
No 55
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.89 E-value=0.0018 Score=57.77 Aligned_cols=75 Identities=20% Similarity=0.141 Sum_probs=45.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHN 204 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~ 204 (297)
.-|+|++|+|||+||+.+.+. ....| +.+..+....... +..++... .+.-+|+||++..........|..
T Consensus 58 vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~ 128 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEKSGD-LAAILTNL---SEGDILFIDEIHRLSPAIEEVLYP 128 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCSHHH-HHHHHHTC---CTTCEEEEETGGGCCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccchhH-HHHHHHhc---cCCCEEEEechhhcCHHHHHHHHH
Confidence 348899999999999999873 33332 2333332223333 33333332 456799999998875444555555
Q ss_pred HHhh
Q 043781 205 CLMR 208 (297)
Q Consensus 205 ~l~~ 208 (297)
.+..
T Consensus 129 ~l~~ 132 (338)
T 3pfi_A 129 AMED 132 (338)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 56
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=0.0016 Score=61.92 Aligned_cols=65 Identities=25% Similarity=0.247 Sum_probs=39.6
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhc-----------------CCCceEEE
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE-----------------GSEKKFFL 186 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~-----------------~~~kr~Li 186 (297)
..-|+|++|+||||||+.+.+. .. + ..+.+..+...... +....+.... ..+++.+|
T Consensus 79 ~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI 152 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCcchHH-HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEE
Confidence 3457899999999999999984 31 1 22344444443332 2222222110 11578899
Q ss_pred EEeCCCCC
Q 043781 187 ILDDVWTD 194 (297)
Q Consensus 187 VlDdv~~~ 194 (297)
+||++...
T Consensus 153 iIDEid~l 160 (516)
T 1sxj_A 153 IMDEVDGM 160 (516)
T ss_dssp EECSGGGC
T ss_pred EEECCCcc
Confidence 99999875
No 57
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0017 Score=60.43 Aligned_cols=61 Identities=25% Similarity=0.317 Sum_probs=40.5
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC----CC-HHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP----FD-EFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~----~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
++|++|+|||+||+.+++. ...+| +.+..+.- .. ....++.++..... ...++|++|++..
T Consensus 220 L~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~sk~~Gese~~ir~~F~~A~~-~~P~IifiDEiDa 285 (437)
T 4b4t_L 220 LYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVDKYIGESARIIREMFAYAKE-HEPCIIFMDEVDA 285 (437)
T ss_dssp EESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCCSSSSHHHHHHHHHHHHHHH-SCSEEEEEECCCS
T ss_pred EECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhccccchHHHHHHHHHHHHHHh-cCCceeeeecccc
Confidence 5799999999999999993 43333 33443322 22 24455555554433 5789999999975
No 58
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.85 E-value=0.0028 Score=54.52 Aligned_cols=80 Identities=16% Similarity=0.041 Sum_probs=42.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhc----C-----C-----CceEEEEEeC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE----G-----S-----EKKFFLILDD 190 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~----~-----~-----~kr~LiVlDd 190 (297)
.-|+|.+|+|||+||+.+++. ....-...+.++.+.. ....+...++.... + . ...-+|+||+
T Consensus 32 vll~G~~GtGKt~la~~i~~~--~~~~~~~~~~v~~~~~-~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDE 108 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAAL-NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHT--STTTTSCEEEEEGGGS-CHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEES
T ss_pred EEEECCCCCcHHHHHHHHHHh--cCccCCCeEEEecCCC-ChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEec
Confidence 347899999999999999984 2211112334444432 22211111211000 0 0 1234899999
Q ss_pred CCCCCccCHHHHHHHHh
Q 043781 191 VWTDDYSKWEPFHNCLM 207 (297)
Q Consensus 191 v~~~~~~~w~~l~~~l~ 207 (297)
+.....+....|...+.
T Consensus 109 i~~l~~~~q~~Ll~~l~ 125 (265)
T 2bjv_A 109 LATAPMMVQEKLLRVIE 125 (265)
T ss_dssp GGGSCHHHHHHHHHHHH
T ss_pred hHhcCHHHHHHHHHHHH
Confidence 98875444445555554
No 59
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0032 Score=58.75 Aligned_cols=61 Identities=25% Similarity=0.279 Sum_probs=40.8
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeC----CCCC-HHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPFD-EFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
++|++|+|||+||+.+++ +...+| +.+..+ .... ....++.++..... ...++|++|++..
T Consensus 248 LyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~sk~vGesek~ir~lF~~Ar~-~aP~IIfiDEiDa 313 (467)
T 4b4t_H 248 LYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQKYVGEGARMVRELFEMART-KKACIIFFDEIDA 313 (467)
T ss_dssp ECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCCCSSSHHHHHHHHHHHHHHH-TCSEEEEEECCTT
T ss_pred eeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhcccCCHHHHHHHHHHHHHHh-cCCceEeeccccc
Confidence 569999999999999999 344333 333322 2222 24455666555443 5789999999975
No 60
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.81 E-value=0.00021 Score=59.72 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=46.3
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFHNC 205 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~~~ 205 (297)
-++|++|+||||+|..+.+. +... ...+++ ..... .+..+. +.+ |++|||+... .|+.+...
T Consensus 62 li~GPPGtGKTt~a~ala~~--l~g~--i~~fan--s~s~f------~l~~l~--~~k-IiiLDEad~~---~~~~~d~~ 123 (212)
T 1tue_A 62 VFCGPANTGKSYFGMSFIHF--IQGA--VISFVN--STSHF------WLEPLT--DTK-VAMLDDATTT---CWTYFDTY 123 (212)
T ss_dssp EEESCGGGCHHHHHHHHHHH--HTCE--ECCCCC--SSSCG------GGGGGT--TCS-SEEEEEECHH---HHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH--hCCC--eeeEEe--ccchh------hhcccC--CCC-EEEEECCCch---hHHHHHHH
Confidence 47899999999999888873 3221 011111 11000 011111 223 8999999643 57666656
Q ss_pred Hhhhhhhhceee-------ecCCCCeEEEEec
Q 043781 206 LMRVLQEFAAIE-------VDGDENPLSLTST 230 (297)
Q Consensus 206 l~~~~~~~~~~~-------~~~~gs~iiiTTr 230 (297)
+...+.+..... ..-+.-.+||||.
T Consensus 124 lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN 155 (212)
T 1tue_A 124 MRNALDGNPISIDRKHKPLIQLKCPPILLTTN 155 (212)
T ss_dssp CHHHHHTCCEEEC----CCEEECCCCEEEEES
T ss_pred HHHHhCCCcccHHHhhcCccccCCCCEEEecC
Confidence 555443321000 0113458999996
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.70 E-value=0.0035 Score=63.34 Aligned_cols=69 Identities=22% Similarity=0.198 Sum_probs=40.2
Q ss_pred cccccCCcchHHHHHHHhcccc---cccCC-Cc-eEEEEeCCC-------CCHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKD---VIENF-DK-RIWVCVSDP-------FDEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~---~~~~F-~~-~~wv~vs~~-------~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
-++|.+|+|||+||+.+.+.-. +.... .. .+++..+.- -.....++.++..+...+++.+|+||++..
T Consensus 195 lL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~ 274 (854)
T 1qvr_A 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHT 274 (854)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 4789999999999999988421 00011 22 223322221 134445666777666545789999999976
Q ss_pred C
Q 043781 194 D 194 (297)
Q Consensus 194 ~ 194 (297)
.
T Consensus 275 l 275 (854)
T 1qvr_A 275 V 275 (854)
T ss_dssp -
T ss_pred H
Confidence 4
No 62
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.69 E-value=0.0097 Score=49.98 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=27.5
Q ss_pred ccccccCCcchHHHHHHHhccccccc----CCCceEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFD 165 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~ 165 (297)
..|+|.+|+|||||+..+........ .-...+|+.....++
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~ 71 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFR 71 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcC
Confidence 46889999999999998887321211 124567777655433
No 63
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.63 E-value=0.00075 Score=63.88 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=37.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEe----CCCCC-HHHHHHHHHHhhcCCCceEEEEEeCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV----SDPFD-EFRIAKAIIEGLEGSEKKFFLILDDVW 192 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~ 192 (297)
.-|+|.+|+|||+||+.+.+. ....| +.++. +..+. ....+..++..... ++..+|+||++.
T Consensus 241 vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~~l~~~~~g~~~~~~~~~f~~A~~-~~p~iLfLDEId 307 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKLAGESESNLRKAFEEAEK-NAPAIIFIDELD 307 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHHHHHTSCTTHHHHHHHHHHHHHHH-TCSEEEEEESHH
T ss_pred EEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEchHhhhhhcchhHHHHHHHHHHHHh-cCCcEEEecchh
Confidence 347899999999999999883 33222 23331 11221 22233444444332 567899999994
No 64
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.60 E-value=0.001 Score=58.48 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=37.4
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeC----CCCC-HHHHHHHHHHhhc---CCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPFD-EFRIAKAIIEGLE---GSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~~-~~~~~~~i~~~~~---~~~kr~LiVlDdv~~ 193 (297)
-++|++|+|||+||+.+++. ...+| +.+..+ .... ....+.+++.... ...+..+|+||++..
T Consensus 40 Ll~GppGtGKT~la~aiA~~--l~~~~---i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVFRK--MGINP---IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp EEEECTTSCHHHHHHHHHHH--HTCCC---EEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred EEECCCCCCHHHHHHHHHHH--hCCCE---EEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 47899999999999999983 43333 233321 1111 2233344443331 125789999999964
No 65
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.42 E-value=0.0056 Score=57.62 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=39.3
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC----C-HHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF----D-EFRIAKAIIEGLEGSEKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~----~-~~~~~~~i~~~~~~~~kr~LiVlDdv~~~ 194 (297)
.-++|++|+|||+||+.+.+. ....| +.++.+.-. . ...-++.++.+... +...+|+||++...
T Consensus 52 vLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~~~g~~~~~~r~lf~~A~~-~~p~ILfIDEid~l 120 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVELFVGVGAARVRDLFAQAKA-HAPCIVFIDEIDAV 120 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTCCTTHHHHHHHHHHHHHHH-TCSEEEEEETGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHHHhcccHHHHHHHHHHHHh-cCCCEEEEechhhh
Confidence 458999999999999999983 33222 233333211 1 12223444444432 46789999999653
No 66
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.39 E-value=0.014 Score=48.08 Aligned_cols=38 Identities=29% Similarity=0.126 Sum_probs=26.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 167 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 167 (297)
..|+|.+|+|||||+..+.. . .-..++|+.....++..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~ 60 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPE 60 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHH
Confidence 46889999999999999876 1 11345666655544443
No 67
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.003 Score=54.00 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=37.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-----CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-----DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
.-|+|++|+||||||+.+.+. ....| +.+..+.-. ....-+..++..... ....++++|++..
T Consensus 48 vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~il~iDeid~ 115 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVEMFVGVGASRVRDMFEQAKK-AAPCIIFIDEIDA 115 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTTSCCCCCHHHHHHHHHHHHT-TCSEEEEETTHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHHHhhhhhHHHHHHHHHHHHH-cCCeeehhhhhhh
Confidence 458999999999999999984 32222 333322111 112233444444332 3567999999943
No 68
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.31 E-value=0.0027 Score=55.96 Aligned_cols=21 Identities=38% Similarity=0.343 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-++|++|+|||+||+.+++.
T Consensus 52 vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHH
Confidence 458899999999999999983
No 69
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0044 Score=57.53 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=40.0
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CCC-HHHHHHHHHHhhcCCCceEEEEEeCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PFD-EFRIAKAIIEGLEGSEKKFFLILDDVW 192 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~ 192 (297)
++|++|+|||+||+.+++. ...+| +.+..+. ... ....++.++..... ...++|++|++.
T Consensus 211 L~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~-~aP~IifiDEiD 275 (428)
T 4b4t_K 211 LYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVHKYLGEGPRMVRDVFRLARE-NAPSIIFIDEVD 275 (428)
T ss_dssp EESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCCSSCSHHHHHHHHHHHHHHH-TCSEEEEEECTH
T ss_pred EECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhccccchhHHHHHHHHHHHHH-cCCCeeechhhh
Confidence 6799999999999999993 44333 3344332 222 34455666555433 568999999996
No 70
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.21 E-value=0.0029 Score=56.24 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=43.9
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCC------C--ceEEEEEeCCCCCCc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS------E--KKFFLILDDVWTDDY 196 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~------~--kr~LiVlDdv~~~~~ 196 (297)
.-++|.+|+|||+||+.+.+ .....| ..+..+......++.....-..... + ...+++||++.....
T Consensus 49 vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~ 123 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA 123 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH
T ss_pred EEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCH
Confidence 34789999999999999988 333222 2233333333343332111000000 0 124899999988765
Q ss_pred cCHHHHHHHHhh
Q 043781 197 SKWEPFHNCLMR 208 (297)
Q Consensus 197 ~~w~~l~~~l~~ 208 (297)
.....|...+..
T Consensus 124 ~~~~~Ll~~l~~ 135 (331)
T 2r44_A 124 KVQSALLECMQE 135 (331)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 555556555543
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0033 Score=58.46 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=39.5
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CCC-HHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PFD-EFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
+||++|+|||.||+.+++. ...+| +.+..+. ... ....++.++..... ...++|++|++..
T Consensus 220 LyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~~~vGese~~ir~lF~~A~~-~aP~IifiDEiDa 285 (434)
T 4b4t_M 220 MYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQMYIGEGAKLVRDAFALAKE-KAPTIIFIDELDA 285 (434)
T ss_dssp EESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCSSCSSHHHHHHHHHHHHHHH-HCSEEEEEECTHH
T ss_pred EECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhhcccchHHHHHHHHHHHHHh-cCCeEEeecchhh
Confidence 5799999999999999993 43333 3333222 222 24455555554433 4689999999963
No 72
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.11 E-value=0.008 Score=53.51 Aligned_cols=21 Identities=29% Similarity=0.129 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-++|.+|+|||+||+.+.+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 447899999999999999883
No 73
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.04 E-value=0.03 Score=51.45 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=26.9
Q ss_pred ccccccCCcchHHHHHHHhccccccc----CCCceEEEEeCCCCCHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEF 167 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~ 167 (297)
..|+|.+|+|||||+..+.-...... .-...+|+.....++..
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~ 227 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV 227 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHH
Confidence 46889999999999997653211111 12346777766555443
No 74
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.98 E-value=0.012 Score=51.21 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=39.0
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC-----HHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-----EFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-----~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
..++|++|+|||||++.+... ... ..+.+..+.-.+ ....+..++..... ....++++|++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~-~~p~i~~~Deid~ 114 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNMYVGESERAVRQVFQRAKN-SAPCVIFFDEVDA 114 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSSTTHHHHHHHHHHHHHHHH-TCSEEEEEETCTT
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh-cCCCeEeeehhhh
Confidence 568999999999999999983 222 234454333211 12233344443211 3578999999975
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.94 E-value=0.002 Score=64.27 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=53.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCH----HHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE----FRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWE 200 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~----~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~ 200 (297)
.-++|++|+|||+||+.+.+. ....-...+.+..+..... ...+...+.. ...-+|+||++.....+...
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~----~~~~vl~lDEi~~~~~~~~~ 597 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRR----KPYSVVLLDAIEKAHPDVFN 597 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCCCC---CHHHHHH----CSSSEEEEECGGGSCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccccccchhhHHHHh----CCCeEEEEeCccccCHHHHH
Confidence 347899999999999999884 2221122344443322110 1111111221 23348999999887666666
Q ss_pred HHHHHHhhhhhh-hceeeecCCCCeEEEEec
Q 043781 201 PFHNCLMRVLQE-FAAIEVDGDENPLSLTST 230 (297)
Q Consensus 201 ~l~~~l~~~~~~-~~~~~~~~~gs~iiiTTr 230 (297)
.|...+..+... ..-........+||.||.
T Consensus 598 ~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 598 ILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp HHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred HHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 676666543100 000011234567888886
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.94 E-value=0.011 Score=52.16 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=18.0
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-|+|.+|+|||++|+.+.+.
T Consensus 29 Li~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 29 LIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp EEESCTTSCHHHHHHHHHHH
T ss_pred EEECCCCchHHHHHHHHHHh
Confidence 47899999999999999884
No 77
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.0056 Score=56.62 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=40.6
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeC----CCCC-HHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPFD-EFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
++|++|+|||.||+.+++. ...+| +.+..+ .... ....++.++..... ...++|++|++..
T Consensus 221 LyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~sk~vGesek~ir~lF~~Ar~-~aP~IIfiDEiDa 286 (437)
T 4b4t_I 221 LYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQKYLGDGPRLCRQIFKVAGE-NAPSIVFIDEIDA 286 (437)
T ss_dssp EESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCCSSSSHHHHHHHHHHHHHHH-TCSEEEEEEEESS
T ss_pred eECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhhccCchHHHHHHHHHHHHHh-cCCcEEEEehhhh
Confidence 6799999999999999993 44333 233322 2222 34556666655543 5689999999974
No 78
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.89 E-value=0.017 Score=47.92 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=17.7
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
..|+|.+|+|||||++.+..
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999998885
No 79
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.82 E-value=0.037 Score=49.43 Aligned_cols=23 Identities=35% Similarity=0.192 Sum_probs=19.8
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|+.|+|||||++.+...
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999998873
No 80
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.66 E-value=0.0077 Score=54.60 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=37.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC-------CCHHHHHHHHHHhhcCC---CceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-------FDEFRIAKAIIEGLEGS---EKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-------~~~~~~~~~i~~~~~~~---~kr~LiVlDdv~~~ 194 (297)
.-++|++|+|||+||+.+.+. ....| +.+..+.- .+....+..++...... ...-+|+||++...
T Consensus 75 ill~Gp~GtGKT~la~~la~~--l~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKH--LDIPI---AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCCE---EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 347899999999999999983 33222 22222211 11223344444333221 24568899999876
Q ss_pred C
Q 043781 195 D 195 (297)
Q Consensus 195 ~ 195 (297)
.
T Consensus 150 ~ 150 (376)
T 1um8_A 150 S 150 (376)
T ss_dssp -
T ss_pred h
Confidence 4
No 81
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.58 E-value=0.058 Score=46.61 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+|+|..|+|||||.+.+..
T Consensus 40 ~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 47899999999999999987
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.57 E-value=0.013 Score=55.43 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=41.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHH--HHHh-----hcCCC-----ceEEEEEeCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKA--IIEG-----LEGSE-----KKFFLILDDV 191 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~--i~~~-----~~~~~-----kr~LiVlDdv 191 (297)
+-++|.+|+|||+||+.+.+.-..... +....-.+ ...+++.. +... +.... ..-++++|++
T Consensus 44 VLL~GpPGtGKT~LAraLa~~l~~~~~-----f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI 118 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLKFAFQNARA-----FEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEI 118 (500)
T ss_dssp EEEECCSSSSHHHHHHHGGGGBSSCCE-----EEEECCTTCCHHHHHCCBC----------CBCCTTSGGGCSEEEEESG
T ss_pred eEeecCchHHHHHHHHHHHHHHhhhhH-----HHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhH
Confidence 347899999999999999984211111 22222222 33333321 1000 00002 2337999999
Q ss_pred CCCCccCHHHHHHHHh
Q 043781 192 WTDDYSKWEPFHNCLM 207 (297)
Q Consensus 192 ~~~~~~~w~~l~~~l~ 207 (297)
..........|...+.
T Consensus 119 ~r~~~~~q~~LL~~le 134 (500)
T 3nbx_X 119 WKAGPAILNTLLTAIN 134 (500)
T ss_dssp GGCCHHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHHH
Confidence 8765445555666664
No 83
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.51 E-value=0.045 Score=54.31 Aligned_cols=68 Identities=25% Similarity=0.188 Sum_probs=43.0
Q ss_pred cccccCCcchHHHHHHHhcccc---cc-cCCCceEEE-Ee-------CCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKD---VI-ENFDKRIWV-CV-------SDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~---~~-~~F~~~~wv-~v-------s~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
-++|.+|+|||+||+.+.+.-. +. ..+.+.+|. .. ...-.....++.++..+.. .+..+|+||++..
T Consensus 211 lL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~-~~~~iL~IDEi~~ 289 (758)
T 1r6b_X 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSILFIDEIHT 289 (758)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS-SSCEEEEETTTTT
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHh-cCCeEEEEechHH
Confidence 3789999999999999987321 00 012333332 11 1122456677777777755 3568999999975
Q ss_pred C
Q 043781 194 D 194 (297)
Q Consensus 194 ~ 194 (297)
.
T Consensus 290 l 290 (758)
T 1r6b_X 290 I 290 (758)
T ss_dssp T
T ss_pred H
Confidence 4
No 84
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.46 E-value=0.014 Score=58.87 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=43.5
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC---HHHHH------------HHHHHhhcCCCceEEEEE
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD---EFRIA------------KAIIEGLEGSEKKFFLIL 188 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~---~~~~~------------~~i~~~~~~~~kr~LiVl 188 (297)
..-++|.+|+|||+||+.+.+. ....-...+.+..+.... ...++ ..+...+.. ...-+|+|
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~l 666 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILF 666 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHH-CSSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEE
Confidence 3458899999999999999873 211101122333222111 00000 011111111 23458999
Q ss_pred eCCCCCCccCHHHHHHHHhh
Q 043781 189 DDVWTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 189 Ddv~~~~~~~w~~l~~~l~~ 208 (297)
|++.....+..+.|...+..
T Consensus 667 DEi~~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 667 DEIEKAHPDVFNILLQILDD 686 (854)
T ss_dssp SSGGGSCHHHHHHHHHHHTT
T ss_pred ecccccCHHHHHHHHHHhcc
Confidence 99987765566666666654
No 85
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.45 E-value=0.021 Score=57.08 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=42.2
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEE----eCCCCC-HHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC----VSDPFD-EFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~----vs~~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
++|++|+|||+||+.+++. ...+| +.|. ++.... ....++.++..... ....+|+||++..
T Consensus 243 L~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~l~sk~~gese~~lr~lF~~A~~-~~PsIIfIDEiDa 308 (806)
T 3cf2_A 243 LYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKLAGESESNLRKAFEEAEK-NAPAIIFIDELDA 308 (806)
T ss_dssp EECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHHHHSSCTTHHHHHHHHHHHHHTT-SCSEEEEEESGGG
T ss_pred EECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHHhhcccchHHHHHHHHHHHHHHH-cCCeEEEEehhcc
Confidence 6799999999999999983 44333 3343 233333 34556666666544 5789999999975
No 86
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.42 E-value=0.0079 Score=60.10 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=39.0
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeC------CCC-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS------DPF-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs------~~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
++|++|+|||.||+.+.+. ....| +.++ ... ..+..+++++..... ....+|++|++..
T Consensus 516 l~GPPGtGKT~lAkaiA~e--~~~~f-----~~v~~~~l~s~~vGese~~vr~lF~~Ar~-~~P~IifiDEiDs 581 (806)
T 3cf2_A 516 FYGPPGCGKTLLAKAIANE--CQANF-----ISIKGPELLTMWFGESEANVREIFDKARQ-AAPCVLFFDELDS 581 (806)
T ss_dssp EESSTTSSHHHHHHHHHHT--TTCEE-----EECCHHHHHTTTCSSCHHHHHHHHHHHHT-TCSEEEECSCGGG
T ss_pred EecCCCCCchHHHHHHHHH--hCCce-----EEeccchhhccccchHHHHHHHHHHHHHH-cCCceeechhhhH
Confidence 6899999999999999993 33322 2221 111 123455566655543 5689999999975
No 87
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.40 E-value=0.013 Score=54.78 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=43.4
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHH--------------------------------
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKA-------------------------------- 172 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~-------------------------------- 172 (297)
.|+|..|+|||||++.+..+.... +-+..+++.+.+.. .+.+++.+
T Consensus 155 ~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~l 233 (473)
T 1sky_E 155 GLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGL 233 (473)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHH
Confidence 688999999999999888753222 22445666665543 23343332
Q ss_pred -HHHhhcC-CCceEEEEEeCCCC
Q 043781 173 -IIEGLEG-SEKKFFLILDDVWT 193 (297)
Q Consensus 173 -i~~~~~~-~~kr~LiVlDdv~~ 193 (297)
+.+.+.. .+++.||++||+..
T Consensus 234 tiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 234 TMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHhcCCcEEEEeccHHH
Confidence 3333333 38999999999954
No 88
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.37 E-value=0.054 Score=48.91 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=23.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 162 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 162 (297)
..|+|.+|+|||||+..+..... ..=..++|+....
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~ 99 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccc
Confidence 45789999999999998887421 1112345665444
No 89
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.24 E-value=0.082 Score=47.93 Aligned_cols=67 Identities=21% Similarity=0.152 Sum_probs=40.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCH---------------------HHHHHHHHHhhcCCCce
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE---------------------FRIAKAIIEGLEGSEKK 183 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~---------------------~~~~~~i~~~~~~~~kr 183 (297)
+.|+|.+|+||||||..+..... ..=..++|+.....++. .+++ .+++.+...++-
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l-~~l~~l~~~~~~ 153 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL-EIMELLVRSGAI 153 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHHHHHHTTTCC
T ss_pred EEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH-HHHHHHHhcCCC
Confidence 45789999999999988776421 11235667765554432 2322 233333222445
Q ss_pred EEEEEeCCCCC
Q 043781 184 FFLILDDVWTD 194 (297)
Q Consensus 184 ~LiVlDdv~~~ 194 (297)
-+||+|.+-..
T Consensus 154 ~lVVIDsl~~l 164 (366)
T 1xp8_A 154 DVVVVDSVAAL 164 (366)
T ss_dssp SEEEEECTTTC
T ss_pred CEEEEeChHHh
Confidence 68999998654
No 90
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.16 E-value=0.037 Score=51.80 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=34.8
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHh
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEG 176 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~ 176 (297)
+|+|..|+|||+|+..+.++. .+.+-+.++++-+.... .+.++.+++...
T Consensus 157 ~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 157 GLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp EEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred eeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 689999999999998888742 23344666777666654 346666666554
No 91
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.13 E-value=0.049 Score=48.54 Aligned_cols=122 Identities=9% Similarity=-0.083 Sum_probs=71.1
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCC-CCccCHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWT-DDYSKWEPFHN 204 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~-~~~~~w~~l~~ 204 (297)
=++|..|.||++.+..+.+.- ....|+....+.+....++.++...+.. ...-+++=++|+|++.. ...+.++.|..
T Consensus 22 l~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~plf~~~kvvii~~~~~kl~~~~~~aLl~ 99 (343)
T 1jr3_D 22 LLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDWNAIFSLCQA-MSLFASRQTLLLLLPENGPNAAINEQLLT 99 (343)
T ss_dssp EEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCHHHHHHHHHH-HHHCCSCEEEEEECCSSCCCTTHHHHHHH
T ss_pred EEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCHHHHHHHhcC-cCCccCCeEEEEECCCCCCChHHHHHHHH
Confidence 377999999999998887731 1223543223344455677777666432 22225677889999977 44457788887
Q ss_pred HHhhhhhhhceeeecCCCCeEEEEeccHHH---HHHHHHhhC-CCccccCCccchhhhh
Q 043781 205 CLMRVLQEFAAIEVDGDENPLSLTSTCQEK---LRHLTLTLG-LRAKFPVSIFDAKKIW 259 (297)
Q Consensus 205 ~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~---~~~v~~~~~-~~~~~~l~~l~~~~lf 259 (297)
.+..- .+++.+|++|...+. ...+..... ...++.+.+++..++.
T Consensus 100 ~le~p----------~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 100 LTGLL----------HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLP 148 (343)
T ss_dssp HHTTC----------BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHH
T ss_pred HHhcC----------CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHH
Confidence 77642 456777776643111 112332222 1245666666655543
No 92
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.12 E-value=0.049 Score=51.14 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=36.2
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-CHHHHHHHHHHh
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEG 176 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~ 176 (297)
+|+|..|+|||+|+..+.++. .+.+-+.++++-+.... .+.++..++...
T Consensus 169 gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 169 GLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp EEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred EeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 688999999999998888741 23345777888777665 356677666653
No 93
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.10 E-value=0.021 Score=53.31 Aligned_cols=65 Identities=15% Similarity=0.034 Sum_probs=40.5
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeC----CCCCHHHHHHHHHHhhcC--CCceEEEEEeCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPFDEFRIAKAIIEGLEG--SEKKFFLILDDVWT 193 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~~~~~~~~~i~~~~~~--~~kr~LiVlDdv~~ 193 (297)
=++|++|+|||+||+.+.+. ....+ ..+.+..+ ......+.+.+++....+ ..+..+|++|++..
T Consensus 67 Ll~GppGtGKT~la~ala~~--l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 67 LLAGPPGTGKTALALAIAQE--LGSKV-PFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTE 137 (456)
T ss_dssp EEECCTTSSHHHHHHHHHHH--HCTTS-CEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEE
T ss_pred EEECCCcCCHHHHHHHHHHH--hCCCc-eEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhh
Confidence 47899999999999999984 33221 11223322 233444445566655411 15678999999965
No 94
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.99 E-value=0.0081 Score=47.42 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=16.5
Q ss_pred ccccccCCcchHHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFA 142 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v 142 (297)
+.|.|++|+||||+|+.+
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 457899999999999999
No 95
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.86 E-value=0.074 Score=47.46 Aligned_cols=20 Identities=35% Similarity=0.207 Sum_probs=17.9
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
.|+|..|+|||||++.+..-
T Consensus 175 ~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 175 IVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp EEEESTTSCHHHHHHHGGGG
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999873
No 96
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.79 E-value=0.02 Score=46.59 Aligned_cols=19 Identities=26% Similarity=-0.019 Sum_probs=15.4
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
-++|..|+||||++..+..
T Consensus 7 vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4789999999999955554
No 97
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.79 E-value=0.01 Score=47.41 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=17.8
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+-|.|++|+||||+|+.+.+
T Consensus 6 i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34779999999999999987
No 98
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.74 E-value=0.056 Score=53.67 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=44.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC-------------HH-----HHHHHHHHhhcCCCceEEE
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-------------EF-----RIAKAIIEGLEGSEKKFFL 186 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-------------~~-----~~~~~i~~~~~~~~kr~Li 186 (297)
.-++|.+|+|||+||+.+.+. ... ..+.+..+.... .. ..+...+.. ...-+|
T Consensus 491 ~ll~G~~GtGKT~la~~la~~--l~~---~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~vl 561 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK----HPHAVL 561 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HTC---EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH----CSSEEE
T ss_pred EEEECCCCCcHHHHHHHHHHH--hcC---CEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh----CCCcEE
Confidence 457899999999999999883 321 122333222111 00 111222222 346799
Q ss_pred EEeCCCCCCccCHHHHHHHHhh
Q 043781 187 ILDDVWTDDYSKWEPFHNCLMR 208 (297)
Q Consensus 187 VlDdv~~~~~~~w~~l~~~l~~ 208 (297)
+||++.....+.++.|...+..
T Consensus 562 ~lDEi~~~~~~~~~~Ll~~le~ 583 (758)
T 1r6b_X 562 LLDEIEKAHPDVFNILLQVMDN 583 (758)
T ss_dssp EEETGGGSCHHHHHHHHHHHHH
T ss_pred EEeCccccCHHHHHHHHHHhcC
Confidence 9999988766666667766654
No 99
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.73 E-value=0.011 Score=47.87 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|++|+|||||++.+...
T Consensus 12 i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 568999999999999999874
No 100
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.68 E-value=0.011 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|+.|+|||||++.+...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999873
No 101
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.67 E-value=0.012 Score=46.62 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+++.+...
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999873
No 102
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.64 E-value=0.11 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=18.6
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.++|.+|+||||++..+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999988775
No 103
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.62 E-value=0.037 Score=51.51 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=42.6
Q ss_pred ccccccCCcchHHHHHHHhcccccc-cCCC-ceEEEEeCCCC-CHHHHHHHHHHh-------------------------
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVI-ENFD-KRIWVCVSDPF-DEFRIAKAIIEG------------------------- 176 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~-~~F~-~~~wv~vs~~~-~~~~~~~~i~~~------------------------- 176 (297)
.+|+|..|+|||+|+.++.+..... ++=+ ..+++-+.+.. .+.++.+++...
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~ 233 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPR 233 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHH
Confidence 3688999999999999998854331 1111 44455444432 334444444332
Q ss_pred --------hcC-CCceEEEEEeCCCC
Q 043781 177 --------LEG-SEKKFFLILDDVWT 193 (297)
Q Consensus 177 --------~~~-~~kr~LiVlDdv~~ 193 (297)
+.. .++..||++||+-.
T Consensus 234 ~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 234 MALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 221 18999999999953
No 104
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.61 E-value=0.029 Score=53.05 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=37.2
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC----CCH-HHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP----FDE-FRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~----~~~-~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
.-|+|++|+||||||+.+.+. .... .+.+..+.- ... ..-+..+++.... ....++++|++..
T Consensus 67 vLL~GppGtGKTtLaraIa~~--~~~~---~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~-~~p~il~IDEId~ 134 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE--ARVP---FITASGSDFVEMFVGVGAARVRDLFETAKR-HAPCIVFIDEIDA 134 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH--TTCC---EEEEEGGGGTSSCTTHHHHHHHHHTTTSSS-SSSCEEEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCC---EEEEehhHHHHhhhhhHHHHHHHHHHHHHh-cCCCEEEEehHHH
Confidence 568999999999999999984 3322 234443221 111 1223333333221 2457999999964
No 105
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.57 E-value=0.037 Score=52.05 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=42.2
Q ss_pred cccccCCcchHHHH-HHHhcccccccCCCc-eEEEEeCCCC-CHHHHHHHHHHhhcC-----------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDVIENFDK-RIWVCVSDPF-DEFRIAKAIIEGLEG----------------------- 179 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~~~~----------------------- 179 (297)
.|+|..|+|||+|| ..+.+.. +-+. .+++-+.+.. .+.++.+.+...-..
T Consensus 166 ~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~ 241 (502)
T 2qe7_A 166 LIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYA 241 (502)
T ss_dssp EEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHH
T ss_pred EEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 68899999999995 6777742 2443 3556565544 345555555443221
Q ss_pred ----------CCceEEEEEeCCCC
Q 043781 180 ----------SEKKFFLILDDVWT 193 (297)
Q Consensus 180 ----------~~kr~LiVlDdv~~ 193 (297)
.++..||++||+-.
T Consensus 242 a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 242 GCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHcCCcEEEEEecHHH
Confidence 19999999999853
No 106
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.56 E-value=0.035 Score=50.74 Aligned_cols=20 Identities=25% Similarity=0.067 Sum_probs=17.8
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
..|+|..|+|||||++.+.+
T Consensus 177 ~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 177 GLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp EEEECCSSSSHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHH
Confidence 36899999999999998876
No 107
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.54 E-value=0.013 Score=46.74 Aligned_cols=20 Identities=30% Similarity=0.177 Sum_probs=17.9
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+-|.|++|+||||+|+.+..
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 45789999999999999987
No 108
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.51 E-value=0.034 Score=50.29 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=26.1
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 165 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 165 (297)
..|+|.+|+||||||..+..... ..=..++|+.....++
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~ 104 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALD 104 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCcc
Confidence 45789999999999988876421 1112466776655443
No 109
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.37 E-value=0.015 Score=47.74 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|+|++|+||||+++.+..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 456889999999999999987
No 110
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.33 E-value=0.031 Score=52.17 Aligned_cols=50 Identities=6% Similarity=-0.011 Sum_probs=31.5
Q ss_pred cccccCCcchHHHHHHHhcccccccCC--CceEEEEeCCCC-CHHHHHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPF-DEFRIAKAIIE 175 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~~~~~i~~ 175 (297)
+|+|..|+|||+|+.++.++......- +..+++-+.... .+.++.+++..
T Consensus 156 ~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 156 PIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK 208 (469)
T ss_dssp CEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh
Confidence 688999999999999998864432211 245555554433 34555555544
No 111
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.33 E-value=0.033 Score=52.45 Aligned_cols=64 Identities=22% Similarity=0.197 Sum_probs=42.4
Q ss_pred cccccCCcchHHHH-HHHhcccccccCCCc-eEEEEeCCCC-CHHHHHHHHHHhhcC-----------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDVIENFDK-RIWVCVSDPF-DEFRIAKAIIEGLEG----------------------- 179 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~~~~----------------------- 179 (297)
.|+|..|+|||+|| ..+.+.. .-+. .+++-+.+.. .+.++.+.+...-..
T Consensus 179 ~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~ 254 (515)
T 2r9v_A 179 LIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYA 254 (515)
T ss_dssp EEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 58899999999995 6777742 2443 3566665544 345555555442211
Q ss_pred ----------CCceEEEEEeCCCC
Q 043781 180 ----------SEKKFFLILDDVWT 193 (297)
Q Consensus 180 ----------~~kr~LiVlDdv~~ 193 (297)
.++..||++||+-.
T Consensus 255 a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 255 GCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHcCCcEEEEeccHHH
Confidence 19999999999953
No 112
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.31 E-value=0.061 Score=48.41 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=40.0
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC---------------------HHHHHHHHHHhhcCCCce
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD---------------------EFRIAKAIIEGLEGSEKK 183 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~---------------------~~~~~~~i~~~~~~~~kr 183 (297)
..|+|.+|+||||||.++..... ..=...+|+.....++ ..+++ .++..+-...+.
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l-~~~~~l~~~~~~ 140 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQAL-EIADMLVRSGAL 140 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHHHHHHTTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHH-HHHHHHHhcCCC
Confidence 46889999999999988876321 1112455666554433 22222 233333222456
Q ss_pred EEEEEeCCCCC
Q 043781 184 FFLILDDVWTD 194 (297)
Q Consensus 184 ~LiVlDdv~~~ 194 (297)
-+||+|.+-..
T Consensus 141 ~lIVIDsl~~l 151 (349)
T 2zr9_A 141 DIIVIDSVAAL 151 (349)
T ss_dssp SEEEEECGGGC
T ss_pred CEEEEcChHhh
Confidence 69999998764
No 113
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.30 E-value=0.03 Score=52.09 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=19.9
Q ss_pred ccccccCCcchHHHHHHHhccccc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDV 148 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~ 148 (297)
.+|+|..|+|||+|+.++.+....
T Consensus 150 ~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 150 LPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp CCEEEETTSCHHHHHHHHHHHCBC
T ss_pred EEEecCCCCCchHHHHHHHHHHHh
Confidence 368899999999999998886443
No 114
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.29 E-value=0.016 Score=46.68 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.++|++|+||||+++.+..
T Consensus 8 i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999987
No 115
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.24 E-value=0.035 Score=48.06 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-++|++|.|||.+|..+.+.
T Consensus 107 ~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 107 IWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 458899999999999999873
No 116
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.23 E-value=0.033 Score=52.42 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=42.1
Q ss_pred cccccCCcchHHHH-HHHhcccccccCCCc-eEEEEeCCCC-CHHHHHHHHHHhhcCC----------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDVIENFDK-RIWVCVSDPF-DEFRIAKAIIEGLEGS---------------------- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~~~~~---------------------- 180 (297)
.|+|..|+|||+|| ..+.+.. . -+. .+++-+.+.. .+.++.+.+...-...
T Consensus 167 ~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~ 242 (507)
T 1fx0_A 167 LIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYT 242 (507)
T ss_dssp BEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHH
T ss_pred EEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHH
Confidence 68899999999995 6888742 2 343 4566666554 3445555544321111
Q ss_pred -----------CceEEEEEeCCCC
Q 043781 181 -----------EKKFFLILDDVWT 193 (297)
Q Consensus 181 -----------~kr~LiVlDdv~~ 193 (297)
++..||++||+-.
T Consensus 243 a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 243 GAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHcCCcEEEEEecHHH
Confidence 9999999999854
No 117
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.22 E-value=0.14 Score=49.43 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=20.6
Q ss_pred EEEEeCCCCCCccCHHHHHHHHhhh
Q 043781 185 FLILDDVWTDDYSKWEPFHNCLMRV 209 (297)
Q Consensus 185 LiVlDdv~~~~~~~w~~l~~~l~~~ 209 (297)
.++||++.......|+.|...+...
T Consensus 204 vL~LDEi~~l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 204 VLFIDEIATLSLKMQQSLLTAMQEK 228 (604)
T ss_dssp EEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred EEEEechhhCCHHHHHHHHHHHHcC
Confidence 7899999988777898888888653
No 118
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.14 E-value=0.046 Score=49.40 Aligned_cols=91 Identities=13% Similarity=0.055 Sum_probs=50.0
Q ss_pred ccccccCCcchHHHHHHHhcccc------c---cc--CCCc---eEEE---EeCC-CCCHHHHHHHHHHhhcCCCceEEE
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKD------V---IE--NFDK---RIWV---CVSD-PFDEFRIAKAIIEGLEGSEKKFFL 186 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~------~---~~--~F~~---~~wv---~vs~-~~~~~~~~~~i~~~~~~~~kr~Li 186 (297)
..|+|+.|+|||||.+.+..-.. + .+ .|.. ..++ .+.. ..+..+ .|...+.. ..=+|
T Consensus 126 i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~---~La~aL~~--~Pdvi 200 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE---ALRSALRE--DPDII 200 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---HHHHHTTS--CCSEE
T ss_pred EEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHH---HHHHHhhh--CcCEE
Confidence 46889999999999998865211 0 00 0110 0111 1111 123333 33444433 56688
Q ss_pred EEeCCCCCCccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHH
Q 043781 187 ILDDVWTDDYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKL 235 (297)
Q Consensus 187 VlDdv~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~ 235 (297)
++|...+. +.++.+.... ..|..||+||+..+..
T Consensus 201 llDEp~d~--e~~~~~~~~~-------------~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 201 LVGEMRDL--ETIRLALTAA-------------ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EESCCCSH--HHHHHHHHHH-------------HTTCEEEEEESCSSHH
T ss_pred ecCCCCCH--HHHHHHHHHH-------------hcCCEEEEEEccChHH
Confidence 99999754 3444433322 3466789999876654
No 119
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.13 E-value=0.017 Score=47.02 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+++.+.+.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHh
Confidence 457899999999999999873
No 120
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.12 E-value=0.26 Score=44.54 Aligned_cols=52 Identities=10% Similarity=0.026 Sum_probs=32.5
Q ss_pred CceEEEEEeCCCCC-CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccHHHHHHHHH
Q 043781 181 EKKFFLILDDVWTD-DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQEKLRHLTL 240 (297)
Q Consensus 181 ~kr~LiVlDdv~~~-~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~~~~~~v~~ 240 (297)
.+.=+|+||.--.. |...-..+...+.+.. ...|..||++|++.+.+..+|.
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~--------~~~g~Tii~vTHdl~~~~~~aD 232 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDIN--------RRLGLTILLITHEMDVVKRICD 232 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--------HHSCCEEEEEESCHHHHHHHCS
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHH--------HhCCCEEEEEecCHHHHHHhCC
Confidence 77779999988654 2222233444444321 1347889999998777766654
No 121
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.07 E-value=0.018 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+++.+.+.
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999873
No 122
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.07 E-value=0.018 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=19.7
Q ss_pred cccccccccCCcchHHHHHHHhc
Q 043781 122 INVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 122 ~~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
+..+.|.|++|+||||+++.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999987
No 123
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.01 E-value=0.018 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|+.|+|||||++.+...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3578999999999999999873
No 124
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.01 E-value=0.019 Score=46.50 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||++.+...
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999988864
No 125
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.00 E-value=0.072 Score=48.68 Aligned_cols=20 Identities=25% Similarity=0.129 Sum_probs=17.7
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
.|+|.+|+|||+|+..+.+.
T Consensus 179 lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 179 MIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEecCCCCChhHHHHHHHHH
Confidence 68899999999999888773
No 126
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.00 E-value=0.019 Score=46.13 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=18.0
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|++|+||||+++.+..
T Consensus 6 I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999987
No 127
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.00 E-value=0.019 Score=46.31 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|+.|+|||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3568999999999999999873
No 128
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.99 E-value=0.019 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.7
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..++|+|..|+|||||++.+..-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999998873
No 129
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.96 E-value=0.019 Score=45.71 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.6
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|+.|+|||||++.+..
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999876
No 130
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.95 E-value=0.019 Score=51.26 Aligned_cols=72 Identities=22% Similarity=0.225 Sum_probs=40.4
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHH
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFH 203 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~ 203 (297)
...++|++|+||||||+.+.+. ....|. ....+-.....++ ..++..+ .++-++++|++........+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~~~l-~~~~~~~---~~~~v~~iDE~~~l~~~~~e~L~ 123 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQGDM-AAILTSL---ERGDVLFIDEIHRLNKAVEELLY 123 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSHHHH-HHHHHHC---CTTCEEEEETGGGCCHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCHHHH-HHHHHHc---cCCCEEEEcchhhcCHHHHHHHH
Confidence 3568999999999999999983 322221 1121112233333 2333333 24457889998765433344443
Q ss_pred H
Q 043781 204 N 204 (297)
Q Consensus 204 ~ 204 (297)
.
T Consensus 124 ~ 124 (334)
T 1in4_A 124 S 124 (334)
T ss_dssp H
T ss_pred H
Confidence 3
No 131
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.91 E-value=0.13 Score=45.77 Aligned_cols=68 Identities=7% Similarity=-0.021 Sum_probs=42.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccC--CCceEEEEeCCCC---------------------CHHHHHHHHHHhh--cC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIEN--FDKRIWVCVSDPF---------------------DEFRIAKAIIEGL--EG 179 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~---------------------~~~~~~~~i~~~~--~~ 179 (297)
..|+|.+|+|||||+.++... .... =...+|+.....+ +.+++.-++++++ -.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 468999999999999777653 2222 1346677655443 3334312344444 22
Q ss_pred CCceEEEEEeCCCCC
Q 043781 180 SEKKFFLILDDVWTD 194 (297)
Q Consensus 180 ~~kr~LiVlDdv~~~ 194 (297)
.++.-|||+|-|...
T Consensus 109 ~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 109 RGEKVVVFIDSLGNL 123 (333)
T ss_dssp TTCCEEEEEECSTTC
T ss_pred ccCceEEEEeccccc
Confidence 367889999999765
No 132
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.90 E-value=0.021 Score=45.61 Aligned_cols=22 Identities=36% Similarity=0.332 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|.|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3568899999999999999873
No 133
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.87 E-value=0.027 Score=56.44 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=38.0
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeC----CCC-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPF-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
+-|+|.+|+||||||+.+.+ .....| +.+..+ ... .....+..++..... ....++++|++..
T Consensus 241 vLL~Gp~GtGKTtLarala~--~l~~~~---i~v~~~~l~~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~ 308 (806)
T 1ypw_A 241 ILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGPEIMSKLAGESESNLRKAFEEAEK-NAPAIIFIDELDA 308 (806)
T ss_dssp EEECSCTTSSHHHHHHHHHH--TTTCEE---EEEEHHHHSSSSTTHHHHHHHHHHHHHHH-HCSEEEEEESGGG
T ss_pred EEEECcCCCCHHHHHHHHHH--HcCCcE---EEEEchHhhhhhhhhHHHHHHHHHHHHHh-cCCcEEEeccHHH
Confidence 35789999999999999988 333333 333321 111 122333444443322 3568999999954
No 134
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.87 E-value=0.021 Score=46.10 Aligned_cols=20 Identities=40% Similarity=0.311 Sum_probs=17.8
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+-|.|++|+||||+++.+..
T Consensus 8 I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999877
No 135
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.86 E-value=0.02 Score=46.70 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|+.|+|||||++.+...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999873
No 136
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.82 E-value=0.021 Score=46.80 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|+.|+|||||++.+..
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999987
No 137
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.81 E-value=0.021 Score=46.75 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=18.6
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 357899999999999999876
No 138
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.78 E-value=0.021 Score=47.43 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|+|+.|+||||+++.+..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999876
No 139
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.74 E-value=0.022 Score=45.72 Aligned_cols=20 Identities=30% Similarity=0.132 Sum_probs=18.0
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.+.|++|+||||+++.+.+
T Consensus 7 I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999986
No 140
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.74 E-value=0.023 Score=45.51 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+++.+...
T Consensus 14 i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 568899999999999999863
No 141
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.72 E-value=0.023 Score=46.49 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.7
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+.|.|+.|+||||||+.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35678899999999999998773
No 142
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.69 E-value=0.024 Score=48.48 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-++|++|+|||+||+.+++.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 348899999999999999984
No 143
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.68 E-value=0.023 Score=48.27 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=36.8
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CCC-HHHHHHHHHHhhcCCCceEEEEEeCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PFD-EFRIAKAIIEGLEGSEKKFFLILDDVW 192 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~ 192 (297)
..|+|++|+|||||++.+.+. ... ..+.+.... ... ...-+..+++.... ....++++|++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~--~~~---~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~i~~~Deid 118 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVEMFVGVGAARVRDLFETAKR-HAPCIVFIDEID 118 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT-SSSEEEEEETHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCC---CEEEeeHHHHHHHHhhHHHHHHHHHHHHHHh-cCCeEEEehhhh
Confidence 568999999999999999984 322 223333211 111 11223344444321 346899999994
No 144
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.66 E-value=0.03 Score=45.74 Aligned_cols=22 Identities=32% Similarity=0.206 Sum_probs=19.2
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.|.|++|+||||+++.+.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3467889999999999999886
No 145
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.65 E-value=0.025 Score=45.72 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=17.9
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
..|+|+.|+|||||++.+..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 46889999999999999975
No 146
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.63 E-value=0.025 Score=46.38 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.7
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.++|.|+.|+||||+++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999976
No 147
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.62 E-value=0.023 Score=45.45 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=16.7
Q ss_pred cccccccCCcchHHHHHHHh
Q 043781 124 VSDVRGMGGIGKTTLAQFAY 143 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~ 143 (297)
...|+|+.|+|||||++.++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 35689999999999999644
No 148
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.61 E-value=0.024 Score=45.50 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|++|+||||+|+.+..
T Consensus 5 I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999987
No 149
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.56 E-value=0.026 Score=46.27 Aligned_cols=22 Identities=41% Similarity=0.377 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|+.|+|||||++.+...
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999874
No 150
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.56 E-value=0.025 Score=45.55 Aligned_cols=20 Identities=30% Similarity=0.147 Sum_probs=17.8
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|++|+||||+|+.+..
T Consensus 6 I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46889999999999998876
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.52 E-value=0.026 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|++|+||||+++.+.+.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999998773
No 152
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.51 E-value=0.056 Score=50.92 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=43.9
Q ss_pred cccccCCcchHHHH-HHHhccccc----ccCCC-ceEEEEeCCCC-CHHHHHHHHHHhhcC-------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDV----IENFD-KRIWVCVSDPF-DEFRIAKAIIEGLEG------------------- 179 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~~~~------------------- 179 (297)
.|+|..|+|||+|| ..+.+.... .++-+ ..+++-+.+.. .+.++.+.+...-..
T Consensus 166 ~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 245 (510)
T 2ck3_A 166 LIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYL 245 (510)
T ss_dssp EEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHH
T ss_pred EEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHH
Confidence 68899999999994 577774321 12344 35666666554 345555555542211
Q ss_pred --------------CCceEEEEEeCCCC
Q 043781 180 --------------SEKKFFLILDDVWT 193 (297)
Q Consensus 180 --------------~~kr~LiVlDdv~~ 193 (297)
.++..||++||+-.
T Consensus 246 a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 246 APYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 19999999999954
No 153
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.51 E-value=0.025 Score=46.51 Aligned_cols=22 Identities=41% Similarity=0.356 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.++|+|..|+|||||++.+..-
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999873
No 154
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.49 E-value=0.53 Score=43.51 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=18.2
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.++|.+|+||||++..+..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999987774
No 155
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.44 E-value=0.027 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=19.4
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.|+|++|+|||||++.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999994
No 156
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.43 E-value=0.09 Score=49.42 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=43.3
Q ss_pred cccccCCcchHHHH-HHHhcccccccCCCc-eEEEEeCCCCC-HHHHHHHHHHhhcCC----------------------
Q 043781 126 DVRGMGGIGKTTLA-QFAYNDKDVIENFDK-RIWVCVSDPFD-EFRIAKAIIEGLEGS---------------------- 180 (297)
Q Consensus 126 ~i~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~~~~~---------------------- 180 (297)
.|+|..|+|||+|+ ..+.+. .+-+. ++++-+.+..+ +.++.+++.+.-...
T Consensus 166 ~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~ 241 (513)
T 3oaa_A 166 LIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYA 241 (513)
T ss_dssp EEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHH
T ss_pred EeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHH
Confidence 58899999999996 677763 22333 46777766543 456666654432111
Q ss_pred -----------CceEEEEEeCCCC
Q 043781 181 -----------EKKFFLILDDVWT 193 (297)
Q Consensus 181 -----------~kr~LiVlDdv~~ 193 (297)
++..||++||+-.
T Consensus 242 a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 242 GCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHhcCCCEEEEecChHH
Confidence 9999999999954
No 157
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.43 E-value=0.097 Score=44.00 Aligned_cols=20 Identities=20% Similarity=-0.044 Sum_probs=16.2
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-++|..|+||||++..+.++
T Consensus 16 litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 36799999999999776664
No 158
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.41 E-value=0.028 Score=44.34 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=18.0
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|++|+||||+|+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999987
No 159
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.40 E-value=0.028 Score=44.51 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|++|+||||+|+.+..
T Consensus 5 I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999987
No 160
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.37 E-value=0.029 Score=46.11 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|+|++|+|||||++.+...
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999873
No 161
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.33 E-value=0.028 Score=45.41 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=18.5
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|++|+||||+++.+.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999986
No 162
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.31 E-value=0.035 Score=45.38 Aligned_cols=21 Identities=29% Similarity=0.093 Sum_probs=18.6
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|++|+||||+|+.+..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999987
No 163
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.29 E-value=0.029 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|.|++|+||||+|+.+...
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999873
No 164
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.28 E-value=0.03 Score=45.13 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|++|+||||+++.+.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999987
No 165
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.26 E-value=0.033 Score=45.05 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
..|+|+.|+|||||++.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 46889999999999999986
No 166
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.25 E-value=0.031 Score=45.90 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.9
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..++|+|++|+|||||++.+...
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999873
No 167
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.24 E-value=0.03 Score=45.94 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.6
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|+.|+|||||++.+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999976
No 168
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.23 E-value=0.032 Score=45.02 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.+.|++|+||||+++.+...
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 568899999999999999874
No 169
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.20 E-value=0.052 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-++|++|+||||||+.+...
T Consensus 111 vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 458899999999999999883
No 170
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.10 E-value=0.034 Score=45.49 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+++.+...
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999873
No 171
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.09 E-value=0.033 Score=47.79 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.9
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+-+.|++|+||||+|+.+..
T Consensus 7 Ivl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999887
No 172
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.06 E-value=0.034 Score=47.61 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-|.|++|+||||||+.+...
T Consensus 4 i~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhc
Confidence 457899999999999998763
No 173
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.97 E-value=0.035 Score=44.62 Aligned_cols=21 Identities=33% Similarity=0.170 Sum_probs=18.7
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|++|+||||+++.+..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999976
No 174
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.94 E-value=0.036 Score=47.92 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=36.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CCC-HHHHHHHHHHhhcCCCceEEEEEeCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PFD-EFRIAKAIIEGLEGSEKKFFLILDDVW 192 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~-~~~~~~~i~~~~~~~~kr~LiVlDdv~ 192 (297)
..|+|++|+|||||++.+... ... ..+.+..+. ... ...-+..+++.... ....++++|++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~--~~~---~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~i~~iDeid 142 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVEMFVGVGAARVRDLFETAKR-HAPCIVFIDEID 142 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT-SCSEEEEEETHH
T ss_pred EEEECCCcChHHHHHHHHHHH--cCC---CEEEecHHHHHHHHhhHHHHHHHHHHHHHHh-cCCcEEehhhhH
Confidence 569999999999999999984 322 233333211 111 11223334444321 246899999995
No 175
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.92 E-value=0.034 Score=55.29 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.7
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
=++|.+|+|||++|+.+.+.
T Consensus 205 LL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 205 VLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp EEESCTTTTTHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 37799999999999999874
No 176
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.89 E-value=0.027 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=14.3
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|++|+||||+|+.+..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EEEEECCC----CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999876
No 177
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.89 E-value=0.037 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|+.|+||||+++.+.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999873
No 178
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.89 E-value=0.037 Score=45.91 Aligned_cols=21 Identities=29% Similarity=0.159 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.+.|++|+||||+++.+...
T Consensus 7 I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999873
No 179
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.88 E-value=0.12 Score=42.68 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=18.5
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|..|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999976
No 180
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.88 E-value=0.041 Score=44.97 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=17.2
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
-|.|+.|+|||||++.+..
T Consensus 5 Vi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4789999999999999876
No 181
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.86 E-value=0.037 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|+.|+|||||++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3568899999999999999873
No 182
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.85 E-value=0.037 Score=45.66 Aligned_cols=20 Identities=30% Similarity=0.327 Sum_probs=17.7
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|++|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999976
No 183
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.76 E-value=0.039 Score=45.58 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=17.7
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|++|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999876
No 184
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.73 E-value=0.12 Score=45.83 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=29.6
Q ss_pred ccccccCCcchHHHHHHHhcccccccC----CCceEEEEeCCCCCHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIEN----FDKRIWVCVSDPFDEFR 168 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~ 168 (297)
..|+|.+|+|||||+..+......... -...+|++....++..+
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~ 157 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWER 157 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHH
Confidence 468899999999999888764211110 23567887776655443
No 185
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.71 E-value=0.043 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|+.|+|||||++.+..-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3578999999999999998763
No 186
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.70 E-value=0.19 Score=56.44 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=50.4
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhcC-------------CCceEEEEEeCCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG-------------SEKKFFLILDDVWT 193 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~~-------------~~kr~LiVlDdv~~ 193 (297)
++|++|+|||+||+.+.... ..+ ..+.++.+...+...+++.+-..+.. .+++.++.+||+.-
T Consensus 1272 L~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinm 1347 (2695)
T 4akg_A 1272 LCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINL 1347 (2695)
T ss_dssp EECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTC
T ss_pred EECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEeccccc
Confidence 56999999999997766531 122 33456777777777777666554321 26889999999755
Q ss_pred CCcc------CHHHHHHHHh
Q 043781 194 DDYS------KWEPFHNCLM 207 (297)
Q Consensus 194 ~~~~------~w~~l~~~l~ 207 (297)
...+ ..+.|+..+.
T Consensus 1348 p~~d~yg~q~~lelLRq~le 1367 (2695)
T 4akg_A 1348 PKLDKYGSQNVVLFLRQLME 1367 (2695)
T ss_dssp SCCCSSSCCHHHHHHHHHHH
T ss_pred ccccccCchhHHHHHHHHHh
Confidence 4333 3455666664
No 187
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.70 E-value=0.044 Score=46.02 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
-+.+.|++|+||||+|+.+.+.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999873
No 188
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.65 E-value=0.04 Score=44.74 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|+.|+||||+++.+..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987
No 189
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.63 E-value=0.041 Score=45.91 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|++|+||||+++.+..
T Consensus 10 I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999986
No 190
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.63 E-value=0.041 Score=45.11 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+++.+.+.
T Consensus 13 I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 568899999999999999873
No 191
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.60 E-value=0.12 Score=48.01 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=17.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-|.|.+|+||||++..+...
T Consensus 48 ~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 48 VTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 347799999999999888874
No 192
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.57 E-value=0.043 Score=45.62 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-|.|++|+||||+++.+...
T Consensus 8 I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999873
No 193
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.53 E-value=0.048 Score=44.60 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+...
T Consensus 4 i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhh
Confidence 568999999999999988874
No 194
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.53 E-value=0.046 Score=45.57 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|+.|+|||||++.+...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3578999999999999999873
No 195
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.49 E-value=0.044 Score=44.57 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+++.+.+.
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999883
No 196
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.47 E-value=0.047 Score=45.84 Aligned_cols=20 Identities=35% Similarity=0.302 Sum_probs=17.6
Q ss_pred cccccccCCcchHHHHHHHh
Q 043781 124 VSDVRGMGGIGKTTLAQFAY 143 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~ 143 (297)
...|+|+.|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 35688999999999999887
No 197
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.47 E-value=0.044 Score=44.97 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+++.+.+.
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999873
No 198
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.46 E-value=0.17 Score=48.18 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=30.4
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC-HHHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-EFRIAKAI 173 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 173 (297)
.|+|..|+|||+|+..+.+.. +-+..+++-+.+..+ +.++++++
T Consensus 231 ~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 231 AIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp EECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred EeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 588999999999999987732 234566666666554 44555553
No 199
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.44 E-value=0.046 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.6
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..++|+|..|+|||||++.+..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHh
Confidence 4568999999999999999887
No 200
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.42 E-value=0.046 Score=44.82 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.3
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
-.++|.|+.|+||||+++.+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999887
No 201
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.41 E-value=0.18 Score=41.34 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=26.4
Q ss_pred cccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHH
Q 043781 128 RGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 174 (297)
Q Consensus 128 ~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 174 (297)
=|..|+||||.++.+++. .+..--.++...-+......+.++.++
T Consensus 6 EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 6 EGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp ECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 399999999999999883 433322333343333333444444444
No 202
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.41 E-value=0.045 Score=46.37 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.++|.|..|+|||||++.+..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999876
No 203
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.40 E-value=0.15 Score=44.98 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=31.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHh
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEG 176 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 176 (297)
.-|.|.+|+||||||..+..+...+. ..++|++.. .+..++...++..
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 34679999999999988876532222 567777654 4555555555443
No 204
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.39 E-value=1.1 Score=41.59 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=18.5
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.++|.+|+||||++..+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHH
Confidence 4567889999999999987775
No 205
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.34 E-value=0.049 Score=46.51 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.5
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.|+|+.|+|||||++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999985
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.32 E-value=0.049 Score=43.57 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=18.0
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.+.|+.|+||||+++.+..
T Consensus 8 i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999977
No 207
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.31 E-value=0.07 Score=45.13 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+|+|+.|+|||||.+.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 357999999999999999987
No 208
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.30 E-value=0.048 Score=44.73 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.++|.|..|+|||||++.+..
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999876
No 209
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.21 E-value=0.072 Score=44.68 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|+.|+|||||.+.+..-
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999999873
No 210
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.21 E-value=0.03 Score=46.01 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|..|+||||+++.+...
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999998763
No 211
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.18 E-value=0.055 Score=42.90 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...++|..|.|||||++.+..-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999883
No 212
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.05 E-value=0.053 Score=47.34 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=17.7
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+-|.|++|+||||||+.+..
T Consensus 36 ivl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999976
No 213
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.05 E-value=0.054 Score=44.73 Aligned_cols=20 Identities=35% Similarity=0.265 Sum_probs=17.8
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|++|+||||+|+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999987
No 214
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.01 E-value=0.079 Score=45.61 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|+.|+|||||.+.+..-
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999873
No 215
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.99 E-value=0.086 Score=44.80 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.2
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...+|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 55679999999999999999873
No 216
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.99 E-value=0.21 Score=44.62 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=30.5
Q ss_pred ccccccCCcchHHHHHHHhccccccc----CCCceEEEEeCCCCCHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRI 169 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~ 169 (297)
..|+|.+|+||||||..+........ .-...+|+.....++..++
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l 173 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRL 173 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence 46889999999999988877422211 1235678887776665443
No 217
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.97 E-value=0.056 Score=44.83 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.+.|++|+||||+|+.+...
T Consensus 8 I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999773
No 218
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.94 E-value=0.055 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.++|+|..|+|||||++.+...
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999988763
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.91 E-value=0.059 Score=44.45 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+++.+...
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999998773
No 220
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.90 E-value=0.082 Score=45.91 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+|+|+.|+|||||.+.+..
T Consensus 37 ~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999986
No 221
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.87 E-value=0.059 Score=44.95 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=17.2
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
.|.|++|+||||+++.+..
T Consensus 4 ~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4789999999999999977
No 222
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.87 E-value=0.057 Score=46.24 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|+|+.|+||||+++.+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999987
No 223
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.84 E-value=0.05 Score=46.42 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.5
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+-++|++|+||||+|+.+..
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999877
No 224
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.81 E-value=0.09 Score=43.86 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|+.|+|||||.+.+..-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999873
No 225
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.78 E-value=0.17 Score=44.59 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=30.8
Q ss_pred ccccccCCcchHHHHHHHhccccccc---------CC-----CceEEEEeCCCCCHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIE---------NF-----DKRIWVCVSDPFDEFRIA 170 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~ 170 (297)
..|+|.+|+|||+||..+..+..... .. ..++|++....++..++.
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~ 160 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM 160 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH
Confidence 46889999999999988876422211 11 356788877776555443
No 226
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.74 E-value=0.058 Score=44.83 Aligned_cols=21 Identities=33% Similarity=0.131 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|+.|+|||||.+.+..-
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999863
No 227
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.71 E-value=0.062 Score=44.44 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=18.4
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|+.|+||||+++.+..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999999865
No 228
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.67 E-value=0.11 Score=49.74 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=24.1
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP 163 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 163 (297)
+|+|..|+|||+|+..+.+.. +-+..+++-+...
T Consensus 236 ~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER 269 (600)
T 3vr4_A 236 AVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGER 269 (600)
T ss_dssp EEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEEC
T ss_pred eeecCCCccHHHHHHHHHhcc----CCCEEEEEEeccc
Confidence 688999999999999998742 2244555544443
No 229
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.63 E-value=0.063 Score=45.67 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.++|.|+.|+||||+|+.+..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999877
No 230
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.58 E-value=0.062 Score=48.31 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=37.4
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCC-------CHHHHHHHHHHhhcCC---CceEEEEEeCCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-------DEFRIAKAIIEGLEGS---EKKFFLILDDVWTD 194 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------~~~~~~~~i~~~~~~~---~kr~LiVlDdv~~~ 194 (297)
.-++|++|+|||++|+.+.+. ....| +-+..+.-. +....+..++...... ....+|+||++...
T Consensus 54 vll~GppGtGKT~la~~ia~~--~~~~~---~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l 128 (363)
T 3hws_A 54 ILLIGPTGSGKTLLAETLARL--LDVPF---TMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TTCCE---EEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--cCCCE---EEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence 347899999999999999983 33222 222221111 1123334444433221 34568999999754
No 231
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.45 E-value=0.099 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|+.|+|||||.+.+..-
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999863
No 232
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.45 E-value=0.1 Score=44.29 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.+..-
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999874
No 233
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.44 E-value=0.099 Score=45.06 Aligned_cols=21 Identities=29% Similarity=0.195 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|+.|+|||||.+.+..-
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCCcHHHHHHHHHcC
Confidence 468999999999999999873
No 234
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.44 E-value=0.2 Score=43.44 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=24.1
Q ss_pred cccccccCCcchHHHHHHHhcccccccCCC-ceEEEEe
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCV 160 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~v 160 (297)
...|+|.+|+|||||++.+....... -. .++|+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeC
Confidence 34688999999999999988743222 22 3556654
No 235
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.42 E-value=0.4 Score=44.00 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-++|++|+||||+|+.+...
T Consensus 261 Iil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 347799999999999998874
No 236
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.41 E-value=0.1 Score=44.51 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||.+.+..-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999874
No 237
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.38 E-value=0.07 Score=43.11 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||.+.+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4679999999999999998875
No 238
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.38 E-value=0.1 Score=44.78 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|+.|+|||||.+.+..-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999873
No 239
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.30 E-value=0.1 Score=44.26 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||.+.+..-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999999999873
No 240
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.30 E-value=0.072 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||.+.+..-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999874
No 241
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.27 E-value=0.049 Score=45.62 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=14.2
Q ss_pred cccccccCCcchHHHHHHHh
Q 043781 124 VSDVRGMGGIGKTTLAQFAY 143 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~ 143 (297)
..+|+|+.|+|||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998
No 242
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.24 E-value=0.11 Score=45.04 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+..-
T Consensus 48 ~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999873
No 243
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.24 E-value=0.073 Score=45.11 Aligned_cols=21 Identities=24% Similarity=0.047 Sum_probs=18.4
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|++|+||||+|+.+.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999976
No 244
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.20 E-value=0.08 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|+.|+|||||.+.+...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3468899999999999998874
No 245
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.19 E-value=0.078 Score=46.76 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=19.4
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
....|+|+.|+|||||++.+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4567999999999999999886
No 246
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.13 E-value=0.078 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||.+.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3578999999999999998875
No 247
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.09 E-value=0.085 Score=41.34 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||.+.+...
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998874
No 248
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.09 E-value=0.18 Score=45.27 Aligned_cols=21 Identities=38% Similarity=0.283 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|.+|+|||||+..+...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 249
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.06 E-value=0.079 Score=43.11 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999987
No 250
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.03 E-value=0.11 Score=44.66 Aligned_cols=22 Identities=36% Similarity=0.296 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||.+.+..-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3578999999999999999873
No 251
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.02 E-value=0.23 Score=55.77 Aligned_cols=76 Identities=21% Similarity=0.137 Sum_probs=55.2
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHH---HHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFR---IAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFH 203 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~---~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~ 203 (297)
+||.||+||++|++.+..- .+ + ..+-+.+++.++..+ -++.++...+..+++..++++|..-.+....+.|-
T Consensus 1614 LvGvgGsGkqSltrLaa~i---~~-~-~~fqi~~~~~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN 1688 (2695)
T 4akg_A 1614 LIGASRTGKTILTRFVAWL---NG-L-KIVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMN 1688 (2695)
T ss_dssp EECTTTSCHHHHHHHHHHH---TT-C-EEECCCCCTTCCHHHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH---hC-C-eeEEEEeeCCCCHHHHHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHH
Confidence 7899999999999998872 11 1 122345788887654 56677777777799999999999766555666666
Q ss_pred HHHh
Q 043781 204 NCLM 207 (297)
Q Consensus 204 ~~l~ 207 (297)
..|.
T Consensus 1689 ~lL~ 1692 (2695)
T 4akg_A 1689 TLLA 1692 (2695)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6664
No 252
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.01 E-value=0.084 Score=45.06 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+|+|..|+|||||.+.+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999998
No 253
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.01 E-value=0.076 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.6
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..++|+|..|+|||||++.+..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999887
No 254
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.00 E-value=0.084 Score=43.77 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=17.7
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-+.|++|+||+|+|+.+.+.
T Consensus 4 il~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999874
No 255
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.99 E-value=0.085 Score=43.49 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||++.+...
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 468899999999999998863
No 256
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.97 E-value=0.088 Score=42.28 Aligned_cols=23 Identities=39% Similarity=0.284 Sum_probs=19.6
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....|.|..|+|||||+..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35678899999999999998873
No 257
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.88 E-value=0.084 Score=45.86 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.1
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
-.+.|.|+.|+||||+|+.+..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999873
No 258
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.85 E-value=0.052 Score=43.68 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||++.+..-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998873
No 259
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.83 E-value=0.089 Score=45.41 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.+..-
T Consensus 49 ~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999883
No 260
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.79 E-value=0.087 Score=44.34 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|+.|+|||||.+.+..-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999873
No 261
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.72 E-value=0.093 Score=41.93 Aligned_cols=21 Identities=38% Similarity=0.338 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|+|.+|+|||||.+.+...
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999998873
No 262
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.70 E-value=0.089 Score=45.74 Aligned_cols=20 Identities=30% Similarity=0.177 Sum_probs=17.8
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+-|.|++|+||||+|+.+..
T Consensus 5 I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999987
No 263
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.69 E-value=0.091 Score=46.27 Aligned_cols=23 Identities=30% Similarity=0.216 Sum_probs=19.7
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|+.|+|||||++.+...
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35679999999999999998873
No 264
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.67 E-value=0.38 Score=40.42 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=17.1
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-++|..|.|||.+|..+...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 346799999999999877763
No 265
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.64 E-value=0.089 Score=45.51 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.++.-
T Consensus 5 v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999998863
No 266
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.55 E-value=1.9 Score=37.60 Aligned_cols=22 Identities=36% Similarity=0.259 Sum_probs=18.6
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
....++|.+|+||||++..+..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999988876
No 267
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.49 E-value=0.097 Score=46.55 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.++|.|..|+|||||++.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999998876
No 268
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.49 E-value=0.098 Score=43.77 Aligned_cols=22 Identities=32% Similarity=0.184 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+-|.|++|+||+|+|+.+.+.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3457799999999999999874
No 269
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.48 E-value=0.095 Score=45.60 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.+..-
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 478999999999999999874
No 270
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.45 E-value=0.096 Score=45.03 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|..|+|||||.+.+..-
T Consensus 49 ~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999999873
No 271
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.45 E-value=0.096 Score=44.75 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||.+.+..-
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999998873
No 272
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.43 E-value=0.098 Score=44.77 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.+..-
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999874
No 273
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.34 E-value=0.11 Score=41.36 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999874
No 274
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.24 E-value=0.081 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.160 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|.|..|+|||||++.+...
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4578899999999999999873
No 275
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.22 E-value=0.11 Score=44.91 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=18.2
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|.+|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 346889999999999998876
No 276
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.22 E-value=0.12 Score=39.85 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999988765
No 277
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.21 E-value=0.16 Score=42.61 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|++|+||||+++.+.+.
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 457799999999999999984
No 278
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.18 E-value=0.099 Score=48.90 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.8
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-++|.+|+|||+||+.+.+.
T Consensus 205 LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 205 VLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEESCTTTTTHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 37799999999999999884
No 279
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.14 E-value=0.11 Score=43.92 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|.|++|+||||+|+.+.+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHH
Confidence 478999999999999998773
No 280
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.14 E-value=0.11 Score=45.62 Aligned_cols=23 Identities=26% Similarity=0.072 Sum_probs=19.4
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|.+|+||||++..+...
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999888763
No 281
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.04 E-value=0.11 Score=41.64 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=20.7
Q ss_pred cccccccccCCcchHHHHHHHhccc
Q 043781 122 INVSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 122 ~~~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
...+.|+|.+|+|||||...+.+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999988753
No 282
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.03 E-value=0.12 Score=39.75 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 468899999999999998765
No 283
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.99 E-value=0.43 Score=45.79 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=17.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.-|.|.+|+||||++..+...
T Consensus 207 ~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 207 VVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 347799999999999888873
No 284
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.96 E-value=0.33 Score=55.26 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=51.5
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHH---HHHHHHHhhcCCCceEEEEEeCCCCCCccCHHHHH
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFR---IAKAIIEGLEGSEKKFFLILDDVWTDDYSKWEPFH 203 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~---~~~~i~~~~~~~~kr~LiVlDdv~~~~~~~w~~l~ 203 (297)
+||.||+||++|++.+.. +.+ + ..+=+.+++.++..+ -++.++...+..+++..++++|-.-.+....+.|-
T Consensus 1651 LVGvgGSGkqSLtrLAa~---i~~-~-~vfqi~i~k~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN 1725 (3245)
T 3vkg_A 1651 LIGVSGGGKSVLSRFVAW---MNG-L-SIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMN 1725 (3245)
T ss_dssp EEESTTSSHHHHHHHHHH---HTT-C-EEECCC----CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHH
T ss_pred EecCCCCcHHHHHHHHHH---HhC-C-eeEEEeeeCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHH
Confidence 789999999999999887 221 1 122345678777654 56677888888899999999998755545556665
Q ss_pred HHHh
Q 043781 204 NCLM 207 (297)
Q Consensus 204 ~~l~ 207 (297)
..|.
T Consensus 1726 ~lL~ 1729 (3245)
T 3vkg_A 1726 TLLA 1729 (3245)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 285
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.92 E-value=0.11 Score=42.78 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||+..+...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4568899999999999888774
No 286
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.90 E-value=0.17 Score=42.15 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=16.9
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
..|+|.+|+|||||+..+..
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45889999999999877765
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.87 E-value=0.12 Score=45.61 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|+.|+|||||++.+..
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 357999999999999999987
No 288
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.87 E-value=0.12 Score=43.72 Aligned_cols=21 Identities=33% Similarity=0.273 Sum_probs=17.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...+.|.||+|||||+..+..
T Consensus 16 i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 345779999999999998874
No 289
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.83 E-value=0.13 Score=41.51 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.1
Q ss_pred cccccccccCCcchHHHHHHHhcc
Q 043781 122 INVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 122 ~~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+....|.|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 345678999999999999998873
No 290
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.79 E-value=0.12 Score=43.79 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.7
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|++|+||||+++.+..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999986
No 291
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.73 E-value=5.8 Score=36.43 Aligned_cols=23 Identities=35% Similarity=0.205 Sum_probs=19.0
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|.+|+||||++..+...
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999888763
No 292
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.67 E-value=0.13 Score=39.73 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 468899999999999998875
No 293
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.66 E-value=0.14 Score=39.94 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3568999999999999998775
No 294
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=89.59 E-value=0.12 Score=49.14 Aligned_cols=20 Identities=25% Similarity=0.129 Sum_probs=18.1
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
+|+|..|+|||+|+..+.+.
T Consensus 225 ~Ifg~~g~GKT~l~~~ia~~ 244 (578)
T 3gqb_A 225 AIPGPFGSGKSVTQQSLAKW 244 (578)
T ss_dssp EECCCTTSCHHHHHHHHHHH
T ss_pred eeeCCCCccHHHHHHHHHhc
Confidence 68899999999999998874
No 295
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.55 E-value=0.15 Score=40.82 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=18.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999777664
No 296
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.52 E-value=0.14 Score=40.58 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|+|.+|+|||||...+...
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999875
No 297
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.50 E-value=0.13 Score=44.38 Aligned_cols=21 Identities=33% Similarity=0.292 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|..|+|||||.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999986
No 298
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=89.40 E-value=0.95 Score=40.43 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.3
Q ss_pred ccccccccCCcchHHHHHHHhccc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
..+.++|.+|+|||||...+....
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999988753
No 299
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.40 E-value=0.52 Score=53.66 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=50.5
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhhc-------C----C---CceEEEEEeCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE-------G----S---EKKFFLILDDVW 192 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~~-------~----~---~kr~LiVlDdv~ 192 (297)
++|++|+|||+++..+... ..+ + ..+.++.|...+...++..+-..+. + + ||+.++.+||+.
T Consensus 1309 L~GptGtGKT~li~~~L~~--l~~-~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiN 1384 (3245)
T 3vkg_A 1309 LCGPPGSGKTMTLTSTLRA--FPD-F-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEIN 1384 (3245)
T ss_dssp EESSTTSSHHHHHHHHGGG--CTT-E-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTT
T ss_pred EECCCCCCHHHHHHHHHHh--CCC-C-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccC
Confidence 6699999999888776652 221 2 2356777888788887777654221 1 1 788999999997
Q ss_pred CCCcc------CHHHHHHHHh
Q 043781 193 TDDYS------KWEPFHNCLM 207 (297)
Q Consensus 193 ~~~~~------~w~~l~~~l~ 207 (297)
-...+ ..+-|+..+.
T Consensus 1385 mp~~D~yGtQ~~ielLrqlld 1405 (3245)
T 3vkg_A 1385 LPSTDKYGTQRVITFIRQMVE 1405 (3245)
T ss_dssp CCCCCTTSCCHHHHHHHHHHH
T ss_pred CCCccccccccHHHHHHHHHH
Confidence 65433 2344555553
No 300
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.40 E-value=0.12 Score=41.86 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=18.7
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
-.+.++|.+|+|||||...+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999853
No 301
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.30 E-value=0.14 Score=43.05 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|.|+.|+||||+++.+..
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999886
No 302
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.25 E-value=0.14 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.216 Sum_probs=19.8
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|..|+|||||++.+...
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 45679999999999999998874
No 303
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.24 E-value=0.15 Score=39.25 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 468899999999999988765
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.24 E-value=0.14 Score=44.11 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.3
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|+.|+|||||.+.+..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 356899999999999998876
No 305
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.22 E-value=0.29 Score=53.44 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=17.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-|+|++|+|||+||.++...
T Consensus 1430 vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1430 VEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999888763
No 306
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.15 E-value=0.44 Score=51.31 Aligned_cols=93 Identities=17% Similarity=0.118 Sum_probs=0.0
Q ss_pred ccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHH--------------------HHHHhhcCCCceEEE
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK--------------------AIIEGLEGSEKKFFL 186 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~--------------------~i~~~~~~~~kr~Li 186 (297)
|+|.+|+|||+||..+.. .....=...+|++....++...... .++..+....+.-||
T Consensus 39 I~G~pGsGKT~LAlqla~--~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~~LV 116 (1706)
T 3cmw_A 39 IYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 116 (1706)
T ss_dssp EECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred EECCCCCCHHHHHHHHHH--HHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCCCEE
Q ss_pred EEeCCCCCCccC-----------------HHHHHHHHhhhhhhhceeeecCCCCeEEEEe
Q 043781 187 ILDDVWTDDYSK-----------------WEPFHNCLMRVLQEFAAIEVDGDENPLSLTS 229 (297)
Q Consensus 187 VlDdv~~~~~~~-----------------w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTT 229 (297)
|+|.+-...... ...+...|..... ..++.||+|.
T Consensus 117 VIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ak--------e~~~tVIvTN 168 (1706)
T 3cmw_A 117 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--------QSNTLLIFIN 168 (1706)
T ss_dssp EESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--------HHTCEEEEEE
T ss_pred EEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHH--------HcCCEEEEEe
No 307
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.15 E-value=0.9 Score=42.08 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=23.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEe
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV 160 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v 160 (297)
.-|.|.+|+|||||+..+..+..... =..++|++.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~ 240 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSL 240 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEEC
Confidence 45779999999999988887532211 124556653
No 308
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.11 E-value=0.21 Score=45.12 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||.+.+..-
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCchHHHHHHHHhcC
Confidence 468999999999999999873
No 309
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.07 E-value=0.2 Score=38.80 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 468899999999999888865
No 310
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.06 E-value=0.14 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-++|++|+||||+|+.+...
T Consensus 53 iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 447899999999999999883
No 311
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.05 E-value=0.41 Score=39.84 Aligned_cols=20 Identities=15% Similarity=-0.112 Sum_probs=16.3
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-++|..|.||||.+.....+
T Consensus 32 vitG~MgsGKTT~lL~~a~r 51 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRR 51 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 36899999999999766664
No 312
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.05 E-value=0.14 Score=46.05 Aligned_cols=20 Identities=30% Similarity=0.322 Sum_probs=17.9
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.++|++|+||||+++.+..
T Consensus 27 i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 45899999999999998877
No 313
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.04 E-value=0.16 Score=40.53 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.3
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|..|+|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999875
No 314
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.00 E-value=0.16 Score=40.50 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3568899999999999998865
No 315
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.94 E-value=0.17 Score=39.30 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=17.4
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.++|.+|+|||||...+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 45889999999999998864
No 316
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.93 E-value=0.15 Score=41.88 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.3
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+.++|.+|+|||||+..+...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999888764
No 317
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.92 E-value=0.15 Score=39.47 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 458899999999999988754
No 318
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.90 E-value=0.17 Score=39.17 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhccc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
+.++|.+|+|||||...+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999998887653
No 319
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.90 E-value=0.17 Score=39.22 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 458899999999999998864
No 320
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.89 E-value=0.16 Score=40.25 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999998864
No 321
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.87 E-value=0.2 Score=40.01 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.1
Q ss_pred ccccccccCCcchHHHHHHHhccc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
-.+.++|.+|+|||||...+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 356789999999999999887653
No 322
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.86 E-value=0.15 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.163 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+-|+|+.|+||||||+.+...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999873
No 323
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.78 E-value=0.17 Score=40.44 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999988875
No 324
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.70 E-value=0.17 Score=40.37 Aligned_cols=21 Identities=33% Similarity=0.301 Sum_probs=17.9
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.++|.+|+|||||.+.+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999987765
No 325
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.70 E-value=0.15 Score=45.59 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|.|+.|+||||||+.+...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 4678999999999999988873
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.69 E-value=0.18 Score=39.10 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhccc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
+.++|.+|+|||||...+.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4688999999999999887753
No 327
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.68 E-value=0.14 Score=46.09 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=19.5
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....|+|..|+|||||++.+..-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999998763
No 328
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.67 E-value=0.12 Score=45.66 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+|+|..|+|||||++.+..
T Consensus 83 vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTT
T ss_pred EEEECCCCchHHHHHHHHHc
Confidence 47999999999999999976
No 329
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.66 E-value=0.17 Score=38.99 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 468899999999999998764
No 330
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=88.66 E-value=0.16 Score=40.75 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=18.7
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.++
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999998865
No 331
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.57 E-value=0.16 Score=46.24 Aligned_cols=21 Identities=33% Similarity=0.173 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|++|+|||||++.+..
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999997
No 332
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.56 E-value=0.18 Score=38.75 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 468899999999999888764
No 333
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.55 E-value=0.16 Score=44.45 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||.+.+..-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3578999999999999999874
No 334
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.45 E-value=0.18 Score=40.12 Aligned_cols=21 Identities=33% Similarity=0.265 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 468899999999999988775
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.37 E-value=0.19 Score=39.42 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.++
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999888765
No 336
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.33 E-value=0.21 Score=39.07 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 468899999999999988765
No 337
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=88.30 E-value=0.17 Score=44.42 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=17.6
Q ss_pred cccccCCcchHHHHHHHhc
Q 043781 126 DVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~ 144 (297)
.|+|..|+|||||.+.++.
T Consensus 22 ~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEETTSSHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHhC
Confidence 7999999999999999775
No 338
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.29 E-value=0.19 Score=40.47 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=18.7
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||+|.+.+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999987764
No 339
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.26 E-value=0.17 Score=47.70 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=19.7
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....|+|..|+|||||++.+...
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHH
Confidence 35679999999999999998873
No 340
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.22 E-value=0.21 Score=39.08 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=20.1
Q ss_pred ccccccccCCcchHHHHHHHhccc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
-.+.++|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 346789999999999999988753
No 341
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.20 E-value=0.49 Score=39.24 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.5
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+-|+.|+||||+++.+.+.
T Consensus 10 ~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 10 TLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 45699999999999999874
No 342
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.17 E-value=0.26 Score=44.41 Aligned_cols=21 Identities=29% Similarity=0.223 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||.+.+..-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHCC
Confidence 468999999999999999874
No 343
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.17 E-value=0.2 Score=39.99 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.7
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
-.+.++|.+|+|||||...+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999998875
No 344
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.15 E-value=0.26 Score=38.58 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999998764
No 345
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.13 E-value=0.19 Score=39.42 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999998875
No 346
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.10 E-value=0.19 Score=41.05 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999988875
No 347
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.09 E-value=0.27 Score=44.41 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||.+.+..-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCchHHHHHHHHhcC
Confidence 468999999999999999874
No 348
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.06 E-value=0.27 Score=44.57 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||.+.+..-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCcHHHHHHHHHHcC
Confidence 468999999999999999874
No 349
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.06 E-value=0.21 Score=39.60 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 458899999999999998875
No 350
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.05 E-value=0.19 Score=44.34 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=19.5
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....|+|.+|+||||++..+...
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH
Confidence 45678999999999999988873
No 351
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.05 E-value=0.1 Score=42.43 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|..|+|||||.+.+...
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999988764
No 352
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.04 E-value=0.2 Score=39.13 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999988764
No 353
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.02 E-value=0.2 Score=39.25 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999988775
No 354
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.00 E-value=0.27 Score=44.67 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||.+.+..-
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHcC
Confidence 468999999999999999874
No 355
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.99 E-value=0.27 Score=44.53 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||.+.+..-
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCChHHHHHHHHHcC
Confidence 468999999999999999873
No 356
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.99 E-value=0.21 Score=39.65 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.2
Q ss_pred ccccccccCCcchHHHHHHHhccc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
..+.++|.+|+|||||...+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 346789999999999999988763
No 357
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.97 E-value=0.27 Score=40.53 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=19.2
Q ss_pred ccccCCcchHHHHHHHhcccccccCCC
Q 043781 127 VRGMGGIGKTTLAQFAYNDKDVIENFD 153 (297)
Q Consensus 127 i~G~~G~GKTtLa~~v~~~~~~~~~F~ 153 (297)
+=|..|+||||+++.+.+. ....++
T Consensus 7 ~EG~dGsGKsTq~~~L~~~--L~~~~~ 31 (205)
T 4hlc_A 7 FEGPEGSGKTTVINEVYHR--LVKDYD 31 (205)
T ss_dssp EECCTTSCHHHHHHHHHHH--HTTTSC
T ss_pred EECCCCCcHHHHHHHHHHH--HHCCCC
Confidence 4499999999999999884 434444
No 358
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.97 E-value=0.21 Score=38.59 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 468899999999999888764
No 359
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=87.94 E-value=0.21 Score=44.83 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||.+.+..-
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTS
T ss_pred EEEECCCCccHHHHHHHHHcC
Confidence 468999999999999999874
No 360
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.93 E-value=0.18 Score=42.30 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|..|+||||+++.+.+.
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 356799999999999999874
No 361
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.91 E-value=0.19 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||.+.+..-
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999873
No 362
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.89 E-value=0.21 Score=38.67 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 468899999999999888764
No 363
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.89 E-value=1.5 Score=35.88 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=26.6
Q ss_pred CceEEEEEeCCCCC---CccCHHHHHHHHhhhhhhhceeeecCCCCeEEEEeccH
Q 043781 181 EKKFFLILDDVWTD---DYSKWEPFHNCLMRVLQEFAAIEVDGDENPLSLTSTCQ 232 (297)
Q Consensus 181 ~kr~LiVlDdv~~~---~~~~w~~l~~~l~~~~~~~~~~~~~~~gs~iiiTTr~~ 232 (297)
++==|||||++-.. ..-..+.+...+..- -...-||||+|..
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R----------p~~~~vIlTGr~a 163 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR----------PGHQTVIITGRGC 163 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS----------CTTCEEEEECSSC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhC----------cCCCEEEEECCCC
Confidence 56679999999432 112445555555432 4556799999965
No 364
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.88 E-value=0.19 Score=39.98 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999998875
No 365
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.86 E-value=0.18 Score=40.83 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999998764
No 366
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.85 E-value=0.21 Score=39.45 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhccc
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
+.++|.+|+|||||...+.+..
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 4588999999999999988753
No 367
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=87.78 E-value=0.18 Score=39.60 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||+|...+.+.
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 468899999999999988764
No 368
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.74 E-value=0.21 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+-|+|+.|+|||||+..+...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999884
No 369
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=87.69 E-value=0.18 Score=40.21 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=19.9
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|.+|+|||||...+....
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999988764
No 370
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.67 E-value=0.21 Score=38.46 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=17.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+..+
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999988764
No 371
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.62 E-value=0.2 Score=41.15 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|+.|+||||+++.+..
T Consensus 6 i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999877
No 372
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.62 E-value=0.22 Score=38.58 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+...
T Consensus 10 i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999998764
No 373
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.59 E-value=0.29 Score=39.53 Aligned_cols=22 Identities=32% Similarity=0.276 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+..+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999988875
No 374
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.58 E-value=0.22 Score=39.36 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.++
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4568899999999999988765
No 375
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.51 E-value=0.73 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.6
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|||..|+|||||++.+..-
T Consensus 447 vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 447 VALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEecCCCcHHHHHHHhccc
Confidence 368999999999999999873
No 376
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=87.51 E-value=0.22 Score=39.95 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999988864
No 377
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=87.51 E-value=0.22 Score=43.73 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.5
Q ss_pred cccccccccccCCcchHHHHHHHhcc
Q 043781 120 ALINVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 120 ~~~~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+...-+.|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 33455679999999999999988875
No 378
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=87.48 E-value=0.23 Score=39.76 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.++
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4578999999999999888765
No 379
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.47 E-value=0.27 Score=38.78 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999998865
No 380
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.39 E-value=0.23 Score=39.04 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4578999999999999998865
No 381
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.34 E-value=0.21 Score=44.86 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.+.+.
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 368899999999999999885
No 382
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.33 E-value=0.23 Score=38.74 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=18.7
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+..+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3568899999999999988754
No 383
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.32 E-value=0.24 Score=38.89 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999888765
No 384
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=87.27 E-value=0.31 Score=38.94 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4568899999999999988765
No 385
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.26 E-value=0.27 Score=38.65 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.++
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3568999999999999988854
No 386
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.24 E-value=0.24 Score=39.03 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.++
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 468899999999999888764
No 387
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.21 E-value=0.24 Score=39.19 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999998864
No 388
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.21 E-value=0.99 Score=37.55 Aligned_cols=18 Identities=39% Similarity=0.400 Sum_probs=14.1
Q ss_pred ccccccCCcchHHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFA 142 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v 142 (297)
.-+.|..|+||||+....
T Consensus 79 ~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 79 VIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEEeCCCCCcHHhHHHH
Confidence 457899999999866444
No 389
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.19 E-value=0.24 Score=39.84 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+..+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999888765
No 390
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.15 E-value=0.24 Score=39.51 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999988775
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.03 E-value=0.15 Score=43.54 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.6
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
-+.|.|..|+||||+++.+.+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3467799999999999998873
No 392
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=87.00 E-value=0.25 Score=38.80 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+...
T Consensus 11 i~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 568899999999999888765
No 393
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.99 E-value=0.23 Score=49.68 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=35.5
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCC----CC-CHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD----PF-DEFRIAKAIIEGLEGSEKKFFLILDDVWT 193 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~-~~~~~~~~i~~~~~~~~kr~LiVlDdv~~ 193 (297)
.-++|++|+||||||+.+.+. ....|- .+..+. .. ........++..... ....+|+||++..
T Consensus 514 vLL~GppGtGKT~Lakala~~--~~~~~i---~v~~~~l~~~~~g~~~~~i~~~f~~a~~-~~p~vl~iDEid~ 581 (806)
T 1ypw_A 514 VLFYGPPGCGKTLLAKAIANE--CQANFI---SIKGPELLTMWFGESEANVREIFDKARQ-AAPCVLFFDELDS 581 (806)
T ss_dssp CCCBCCTTSSHHHHHHHHHHH--HTCCCC---CCCCSSSTTCCTTTSSHHHHHHHHHHHH-HCSBCCCCSSHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH--hCCCEE---EEechHhhhhhcCccHHHHHHHHHHHHh-cCCeEEEEEChhh
Confidence 347899999999999999984 333331 111111 00 112233334333322 2346899999864
No 394
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.96 E-value=0.57 Score=39.56 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=28.7
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 174 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 174 (297)
+.+-|++|+||||+++.+.+.-. ...+.....+.-+......+.+++++
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 34679999999999999988422 23455344443332222334444444
No 395
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.93 E-value=0.26 Score=38.64 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|.+|+|||||...+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 35688999999999999887653
No 396
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.90 E-value=0.24 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.0
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...+|+|.+|+|||||.+.+..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999874
No 397
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.87 E-value=0.2 Score=39.49 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+...
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999998754
No 398
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=86.82 E-value=0.22 Score=44.82 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||.+.+..-
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999873
No 399
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=86.82 E-value=0.25 Score=39.58 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|.+|+|||||...+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 35789999999999999887653
No 400
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.81 E-value=0.26 Score=39.72 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3568999999999999988765
No 401
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=86.71 E-value=0.26 Score=41.25 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.0
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|.+|+|||||...+....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 45799999999999999988753
No 402
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=86.67 E-value=0.28 Score=39.47 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|.+|+|||||...+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999888753
No 403
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.66 E-value=0.24 Score=45.77 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 579999999999999999874
No 404
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.65 E-value=0.23 Score=43.81 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=20.3
Q ss_pred cccccccccCCcchHHHHHHHhcc
Q 043781 122 INVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 122 ~~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+....|.|+.|.|||||.+.+...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 445678899999999999999864
No 405
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=86.62 E-value=0.27 Score=38.91 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.7
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|.+|+|||||...+.+..
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 35688999999999999988754
No 406
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.60 E-value=0.27 Score=39.47 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3568899999999999888765
No 407
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.59 E-value=0.14 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=15.7
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.++|.|..|+||||+|+.+.+
T Consensus 7 iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999998876
No 408
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.55 E-value=0.26 Score=41.45 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=16.4
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
-+.|.||+||||+|..+...
T Consensus 10 ~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 10 FLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEESSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 35699999999998777764
No 409
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.53 E-value=0.65 Score=38.50 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=29.0
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIE 175 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 175 (297)
.+-|..|+||||+++.+.+.-. ...+..+.+..-+....+.+.+++++.
T Consensus 7 ~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 7 VIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp EEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 3569999999999999988422 223423333333222234455555554
No 410
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=86.47 E-value=0.27 Score=43.06 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4679999999999999998875
No 411
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.44 E-value=0.46 Score=39.89 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=14.6
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+-|++|+||||+++.+.+.
T Consensus 29 ~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 29 TFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp EEECCC---CHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45699999999999999884
No 412
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.41 E-value=0.25 Score=46.86 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=17.7
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+-++|++|+||||+|+.+..
T Consensus 38 IvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999876
No 413
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.38 E-value=0.37 Score=38.38 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.7
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|.+|+|||||...+.++.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 45789999999999999988753
No 414
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=86.36 E-value=0.29 Score=39.34 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4568899999999999988865
No 415
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=86.35 E-value=0.25 Score=46.06 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-++|++|+||||+++.+...
T Consensus 42 IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998874
No 416
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=86.35 E-value=0.29 Score=39.18 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|.+|+|||||...+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 35689999999999999988753
No 417
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=86.25 E-value=0.28 Score=40.05 Aligned_cols=22 Identities=32% Similarity=0.228 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+..+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999988875
No 418
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=86.22 E-value=0.29 Score=39.82 Aligned_cols=21 Identities=24% Similarity=0.101 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 10 i~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999988765
No 419
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.21 E-value=0.5 Score=49.93 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
++|||..|+|||||++.+.+
T Consensus 1108 vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHhc
Confidence 47999999999999999987
No 420
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.21 E-value=0.27 Score=44.27 Aligned_cols=20 Identities=40% Similarity=0.459 Sum_probs=17.9
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
.|+|..|+|||||++.+..-
T Consensus 179 ~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 179 VVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp EEEESSSSCHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999873
No 421
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.20 E-value=0.29 Score=38.96 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+...
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 568999999999999998875
No 422
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=86.20 E-value=0.29 Score=39.52 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.6
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|.+|+|||||...+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 35689999999999999988753
No 423
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=86.16 E-value=0.28 Score=43.52 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=19.2
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|.+|+||||++..+...
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999888763
No 424
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=86.16 E-value=0.27 Score=44.03 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.3
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..++|+|.+|+|||||...+..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4567999999999999999875
No 425
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=86.12 E-value=0.3 Score=39.32 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=17.9
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|+|.+|+|||||...+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999988764
No 426
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.06 E-value=0.3 Score=40.71 Aligned_cols=20 Identities=35% Similarity=0.278 Sum_probs=16.6
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
.-|.|.+|+|||+||.++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 35789999999999977654
No 427
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=86.05 E-value=1.1 Score=45.43 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=16.2
Q ss_pred ccccccCCcchHHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFA 142 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v 142 (297)
..|+|+.|.|||||.+.+
T Consensus 665 ~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 357899999999999998
No 428
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.05 E-value=0.28 Score=44.79 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
..|+|+.|+|||||.+.+..
T Consensus 50 ~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCChHHHHHHHHhC
Confidence 46889999999999999986
No 429
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.04 E-value=0.31 Score=38.90 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999988865
No 430
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.03 E-value=0.28 Score=42.88 Aligned_cols=23 Identities=35% Similarity=0.205 Sum_probs=19.3
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
....++|.+|+||||++..+...
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35668899999999999888874
No 431
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=85.86 E-value=0.31 Score=38.68 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3568899999999999998765
No 432
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=85.86 E-value=0.31 Score=39.36 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=18.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4578899999999999988765
No 433
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.85 E-value=0.3 Score=39.03 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=19.6
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
-.+.|+|.+|+|||||...+.++
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 34578999999999999988875
No 434
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=85.80 E-value=0.29 Score=39.32 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+...
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999998764
No 435
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.78 E-value=0.3 Score=41.81 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999998875
No 436
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.71 E-value=0.33 Score=38.51 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.+.
T Consensus 19 i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 19 VIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999998854
No 437
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=85.70 E-value=0.32 Score=38.67 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999988764
No 438
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.67 E-value=0.31 Score=39.66 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4578999999999999988764
No 439
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.66 E-value=0.32 Score=39.13 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4578999999999999988765
No 440
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.64 E-value=0.29 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||++.+..-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3568999999999999998774
No 441
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=85.64 E-value=0.3 Score=44.01 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|..|+|||||.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 4579999999999999999974
No 442
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.61 E-value=0.31 Score=38.93 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 3568999999999999988764
No 443
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=85.60 E-value=0.31 Score=43.10 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=18.0
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.|+|=|||||||.+-.+.-
T Consensus 49 KVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 49 KVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCccCHHHHHHHHHH
Confidence 4567889999999999876655
No 444
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=85.55 E-value=0.32 Score=39.27 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999998765
No 445
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.48 E-value=0.31 Score=43.15 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.2
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|.|+.|+||||||..+...
T Consensus 6 i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHT
T ss_pred EEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999998863
No 446
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=85.42 E-value=0.32 Score=42.60 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.6
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...++|+.|+|||||.+.+. .
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-S
T ss_pred EEEEECCCCCCHHHHHHHHH-H
Confidence 35789999999999999998 5
No 447
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.32 E-value=0.36 Score=37.56 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.7
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|+.|.|||||...++-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999988764
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.32 E-value=0.32 Score=42.97 Aligned_cols=22 Identities=27% Similarity=0.051 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|.|+.|+||||||..+...
T Consensus 12 ~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 3468899999999999998863
No 449
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.27 E-value=0.94 Score=41.83 Aligned_cols=48 Identities=10% Similarity=0.017 Sum_probs=31.0
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIE 175 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 175 (297)
.-|.|.+|+||||||..+..+..... =..++|++.. .+..++...++.
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 35779999999999988887532221 1246676554 445566665554
No 450
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=85.17 E-value=0.35 Score=40.04 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+...
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999998875
No 451
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=85.16 E-value=0.35 Score=39.56 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=18.5
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999988764
No 452
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=85.16 E-value=0.63 Score=38.95 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.+-|+.|+||||+++.+.+.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 346699999999999999884
No 453
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.05 E-value=0.32 Score=44.79 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.|+|..|+|||||.+.+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 389999999999999999874
No 454
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.05 E-value=0.29 Score=45.35 Aligned_cols=23 Identities=39% Similarity=0.300 Sum_probs=18.9
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+.++|.+|+||||++..+...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34668999999999999887763
No 455
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.96 E-value=0.81 Score=40.82 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=32.1
Q ss_pred ccccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHHhh
Q 043781 125 SDVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGL 177 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~~ 177 (297)
.-|.|.+|+||||||..+..+... +=..++|++. ..+..++...++...
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 346799999999999888875322 1124556654 456667766665543
No 456
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=84.92 E-value=0.34 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.7
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.|+|.+|+|||||+..+..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999988764
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.90 E-value=0.37 Score=39.77 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=18.0
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-|.|..|+||||||..+...
T Consensus 37 ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999998774
No 458
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.86 E-value=0.34 Score=43.82 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=17.6
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
..|+|+.|+|||||++.+..
T Consensus 139 i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 45889999999999988876
No 459
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=84.83 E-value=0.7 Score=41.64 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=19.7
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.|+|.+|+|||||.+.+....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 46799999999999999998753
No 460
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.80 E-value=0.37 Score=39.12 Aligned_cols=22 Identities=36% Similarity=0.280 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+..+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999988875
No 461
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=84.79 E-value=0.33 Score=45.00 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.+.+.
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 368899999999999999884
No 462
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.74 E-value=0.37 Score=38.45 Aligned_cols=22 Identities=41% Similarity=0.389 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999988865
No 463
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=84.73 E-value=0.37 Score=39.14 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=18.8
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999888765
No 464
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=84.63 E-value=0.36 Score=40.83 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.6
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.|+|.+|+|||||...+....
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999998887653
No 465
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=84.62 E-value=0.37 Score=39.07 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=18.3
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+.++|.+|+|||||...+.++
T Consensus 33 i~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 33 CVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 468899999999999888765
No 466
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=84.60 E-value=0.41 Score=39.00 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=19.1
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999988864
No 467
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.57 E-value=0.39 Score=38.85 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999988765
No 468
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=84.54 E-value=0.38 Score=38.88 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=19.4
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
-.+.++|.+|+|||||...+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 34678999999999999888765
No 469
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=84.53 E-value=0.36 Score=44.41 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.2
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+|+|..|+|||||.+.+..
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999988
No 470
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.44 E-value=0.27 Score=47.00 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||++.+...
T Consensus 372 I~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHh
Confidence 468899999999999999883
No 471
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=84.31 E-value=0.41 Score=39.50 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.3
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
.+.|+|.+|+|||||...+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999988874
No 472
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=84.07 E-value=1.7 Score=44.69 Aligned_cols=18 Identities=39% Similarity=0.246 Sum_probs=16.1
Q ss_pred ccccccCCcchHHHHHHH
Q 043781 125 SDVRGMGGIGKTTLAQFA 142 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v 142 (297)
..|+|+.|.|||||.+.+
T Consensus 792 ~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 792 VLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHH
Confidence 458899999999999988
No 473
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=84.02 E-value=0.42 Score=39.18 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3568899999999999988765
No 474
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=83.97 E-value=0.25 Score=38.98 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=8.4
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+.++
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999888764
No 475
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=83.93 E-value=0.34 Score=38.51 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=18.9
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.++|.+|+|||||...+..+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999998654
No 476
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.87 E-value=0.4 Score=45.66 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..+|+|..|+|||||++.+..-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999873
No 477
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=83.83 E-value=0.29 Score=41.19 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.6
Q ss_pred cccccccCCcchHHHHHHHhc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...|+|+.|+|||||.+.+..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999998887
No 478
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.81 E-value=0.4 Score=45.63 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||++.++.-
T Consensus 315 ~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 315 IGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 368899999999999999984
No 479
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=83.72 E-value=2 Score=42.71 Aligned_cols=19 Identities=32% Similarity=0.148 Sum_probs=14.7
Q ss_pred ccccccCCcchHHHHHHHh
Q 043781 125 SDVRGMGGIGKTTLAQFAY 143 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~ 143 (297)
.-|+|..|+||||++..+.
T Consensus 112 vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 112 MVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4578999999999665443
No 480
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=83.56 E-value=0.4 Score=45.69 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||++.++.-
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 368899999999999999974
No 481
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=83.55 E-value=0.56 Score=45.44 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=31.3
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHHHHHHHHH
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIE 175 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 175 (297)
-|.|++|.|||+++..+... ....-..++.++...+..+..+...+..
T Consensus 199 li~GppGTGKT~~~~~~i~~--l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 199 LIQGPPGTGKTVTSATIVYH--LARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp EEECCTTSCHHHHHHHHHHH--HHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 47799999999987666542 2222345777777766556666655543
No 482
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=83.55 E-value=0.43 Score=41.76 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+.|+|.+|+|||||...+...
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999988875
No 483
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=83.48 E-value=0.65 Score=44.53 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.4
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||++.+..-
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999863
No 484
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.46 E-value=0.8 Score=50.12 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=41.6
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCCHHH--------------------HHHHHHHhhcCCCceEE
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFR--------------------IAKAIIEGLEGSEKKFF 185 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--------------------~~~~i~~~~~~~~kr~L 185 (297)
-++|.+|+||||||.++.... .+. =...+|+++....+... ....+...+....+.-+
T Consensus 1085 ll~G~~GtGKT~la~~~~~ea-~k~-Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~~dl 1162 (2050)
T 3cmu_A 1085 EIYGPESSGKTTLTLQVIAAA-QRE-GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1162 (2050)
T ss_dssp EEECCTTSSHHHHHHHHHHHH-HTT-TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHc-CCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCCCCE
Confidence 477999999999998888742 222 23456676665443322 22233333322256789
Q ss_pred EEEeCCCCC
Q 043781 186 LILDDVWTD 194 (297)
Q Consensus 186 iVlDdv~~~ 194 (297)
||+|++-..
T Consensus 1163 vVIDsl~~L 1171 (2050)
T 3cmu_A 1163 IVVDSVAAL 1171 (2050)
T ss_dssp EEESCGGGC
T ss_pred EEECCcccc
Confidence 999998654
No 485
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.33 E-value=1 Score=36.40 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=23.4
Q ss_pred cccccCCcchHHHHHHHhcccccccCCCceEEEEeCCCCC
Q 043781 126 DVRGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 165 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 165 (297)
-|+|.+|+|||++|..+... . ..++++..+..++
T Consensus 3 lV~Gg~~SGKS~~A~~la~~----~--~~~~yiaT~~~~d 36 (180)
T 1c9k_A 3 LVTGGARSGKSRHAEALIGD----A--PQVLYIATSQILD 36 (180)
T ss_dssp EEEECTTSSHHHHHHHHHCS----C--SSEEEEECCCC--
T ss_pred EEECCCCCcHHHHHHHHHhc----C--CCeEEEecCCCCC
Confidence 37899999999999998863 1 2356666555543
No 486
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=83.19 E-value=0.48 Score=39.30 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=17.9
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
+-|+|-+|+|||+|...+.++
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 458899999999999887654
No 487
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=83.15 E-value=0.44 Score=42.45 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=18.6
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.|+|.+|+|||||+..+..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4457899999999999988864
No 488
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.15 E-value=0.44 Score=41.63 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.3
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...++|+.|+|||||.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 3468999999999999999874
No 489
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=83.04 E-value=0.47 Score=40.07 Aligned_cols=23 Identities=17% Similarity=0.201 Sum_probs=19.5
Q ss_pred cccccccCCcchHHHHHHHhccc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYNDK 146 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~~ 146 (297)
.+.++|.+|+|||||...+....
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 35789999999999999888753
No 490
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=82.98 E-value=0.28 Score=47.35 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=17.7
Q ss_pred cccccCCcchHHHHHHHhcc
Q 043781 126 DVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 126 ~i~G~~G~GKTtLa~~v~~~ 145 (297)
=++|.+|+|||+||+.+.+.
T Consensus 331 LL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 331 LIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp EEEESSCCTHHHHHHSSSTT
T ss_pred EEECCCchHHHHHHHHHHHh
Confidence 36799999999999999873
No 491
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=82.98 E-value=0.53 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.1
Q ss_pred ccccccccCCcchHHHHHHHhcc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...+|+|+.|+|||||.+.+..-
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 45689999999999999999873
No 492
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=82.83 E-value=0.6 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.5
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
..|+|+.|+|||||++.+..-
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHhhc
Confidence 468999999999999999863
No 493
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=82.77 E-value=0.49 Score=40.14 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=16.4
Q ss_pred ccccccCCcchHHHHHHHhc
Q 043781 125 SDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~ 144 (297)
+.|.|-||+||||+|..+..
T Consensus 4 I~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEecCCCCcHHHHHHHHHH
Confidence 34568999999999987776
No 494
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=82.72 E-value=1.3 Score=41.67 Aligned_cols=22 Identities=36% Similarity=0.302 Sum_probs=18.6
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
..+.|+|.+|+||||++..+..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999988873
No 495
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=82.69 E-value=0.48 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.6
Q ss_pred ccccccccCCcchHHHHHHHhc
Q 043781 123 NVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 123 ~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...+|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4567999999999999999886
No 496
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=82.62 E-value=4 Score=36.77 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=16.2
Q ss_pred ccccc-ccCCcchHHHHHHHhc
Q 043781 124 VSDVR-GMGGIGKTTLAQFAYN 144 (297)
Q Consensus 124 ~~~i~-G~~G~GKTtLa~~v~~ 144 (297)
.+.|+ |-||+||||+|-.+..
T Consensus 110 vIav~s~KGGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 110 VIFISNLKGGVSKTVSTVSLAH 131 (398)
T ss_dssp EEEECCSSSSSSHHHHHHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHH
Confidence 34455 7899999999977765
No 497
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=82.59 E-value=0.49 Score=39.27 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=19.9
Q ss_pred cccccccccCCcchHHHHHHHhc
Q 043781 122 INVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 122 ~~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
+-.+++.|.-|+||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999998865
No 498
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=82.58 E-value=0.52 Score=41.00 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=18.4
Q ss_pred cccccccccCCcchHHHHHHHhc
Q 043781 122 INVSDVRGMGGIGKTTLAQFAYN 144 (297)
Q Consensus 122 ~~~~~i~G~~G~GKTtLa~~v~~ 144 (297)
...+.|+|-||+||||+|..+..
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHHH
Confidence 34556779999999999977766
No 499
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=82.56 E-value=0.48 Score=45.81 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.7
Q ss_pred ccccccCCcchHHHHHHHhcc
Q 043781 125 SDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 125 ~~i~G~~G~GKTtLa~~v~~~ 145 (297)
.+|+|..|+|||||.+.+..-
T Consensus 385 ~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 368899999999999999984
No 500
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=82.47 E-value=0.24 Score=43.72 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.0
Q ss_pred cccccccCCcchHHHHHHHhcc
Q 043781 124 VSDVRGMGGIGKTTLAQFAYND 145 (297)
Q Consensus 124 ~~~i~G~~G~GKTtLa~~v~~~ 145 (297)
...|+|+.|+|||||.+.+...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 4579999999999999999874
Done!