BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043785
(68 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|118483978|gb|ABK93876.1| unknown [Populus trichocarpa]
Length = 69
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/68 (86%), Positives = 62/68 (91%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQL FTVAFSAVPLTLYIPP+RSLNLFVETMED LRESR+YT RLYPRAR VWSRVLD
Sbjct: 2 MLQLLFTVAFSAVPLTLYIPPVRSLNLFVETMEDLLRESRVYTGRLYPRARHVWSRVLDI 61
Query: 61 ILCNLRLD 68
+LCN RLD
Sbjct: 62 LLCNFRLD 69
>gi|224106071|ref|XP_002314033.1| predicted protein [Populus trichocarpa]
gi|222850441|gb|EEE87988.1| predicted protein [Populus trichocarpa]
Length = 68
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/68 (86%), Positives = 62/68 (91%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQL FTVAFSAVPLTLYIPP+RSLNLFVETMED LRESR+YT RLYPRAR VWSRVLD
Sbjct: 1 MLQLLFTVAFSAVPLTLYIPPVRSLNLFVETMEDLLRESRVYTGRLYPRARHVWSRVLDI 60
Query: 61 ILCNLRLD 68
+LCN RLD
Sbjct: 61 LLCNFRLD 68
>gi|224055221|ref|XP_002298436.1| predicted protein [Populus trichocarpa]
gi|222845694|gb|EEE83241.1| predicted protein [Populus trichocarpa]
Length = 68
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/68 (80%), Positives = 58/68 (85%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQLFFTVAFSAVPLTLYIPP+RSLNLFVETME LRES +YT RLYPRAR WSR LD
Sbjct: 1 MLQLFFTVAFSAVPLTLYIPPMRSLNLFVETMEGLLRESSVYTTRLYPRARHAWSRFLDI 60
Query: 61 ILCNLRLD 68
+LCN RL
Sbjct: 61 LLCNFRLG 68
>gi|357514837|ref|XP_003627707.1| hypothetical protein MTR_8g036790 [Medicago truncatula]
gi|355521729|gb|AET02183.1| hypothetical protein MTR_8g036790 [Medicago truncatula]
Length = 78
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/64 (76%), Positives = 56/64 (87%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQLFFTVAFS VPLTLYIPP+RSLNLFVETME +RES Y+NR+YPR R WSR+L+C
Sbjct: 1 MLQLFFTVAFSVVPLTLYIPPIRSLNLFVETMESVMRESTTYSNRIYPRLRIAWSRMLNC 60
Query: 61 ILCN 64
+LCN
Sbjct: 61 LLCN 64
>gi|388511919|gb|AFK44021.1| unknown [Medicago truncatula]
Length = 67
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/64 (76%), Positives = 56/64 (87%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQLFFTVAFS VPLTLYIPP+RSLNLFVETME +RES Y+NR+YPR R WSR+L+C
Sbjct: 1 MLQLFFTVAFSVVPLTLYIPPIRSLNLFVETMESVMRESTTYSNRIYPRLRIAWSRMLNC 60
Query: 61 ILCN 64
+LCN
Sbjct: 61 LLCN 64
>gi|225450143|ref|XP_002279582.1| PREDICTED: uncharacterized protein LOC100263680 isoform 1 [Vitis
vinifera]
Length = 67
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 57/64 (89%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQLFF VAFS+VPLTLYIPPLRSLNLFVETMED +RE+ ++T+RLYPR R + R+LDC
Sbjct: 1 MLQLFFAVAFSSVPLTLYIPPLRSLNLFVETMEDIVRETSMHTDRLYPRVRQAFFRILDC 60
Query: 61 ILCN 64
+LCN
Sbjct: 61 MLCN 64
>gi|4678939|emb|CAB41330.1| putative protein [Arabidopsis thaliana]
Length = 763
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 43/66 (65%), Positives = 52/66 (78%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQLFFT+AFSA PLTLYIPP+R L +FVETME+ E R+Y+ RL+PRAR WSR+LDC
Sbjct: 694 MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 753
Query: 61 ILCNLR 66
+ R
Sbjct: 754 FFSSSR 759
>gi|297816484|ref|XP_002876125.1| hypothetical protein ARALYDRAFT_906571 [Arabidopsis lyrata subsp.
lyrata]
gi|297321963|gb|EFH52384.1| hypothetical protein ARALYDRAFT_906571 [Arabidopsis lyrata subsp.
lyrata]
Length = 71
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 52/66 (78%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQLFFT+AFSA PLTLYIPP+R L +FVETME+ E R+Y+ RL+PRAR WSR+LDC
Sbjct: 1 MLQLFFTIAFSAAPLTLYIPPVRCLTVFVETMEEMGMEGRVYSRRLFPRARIAWSRLLDC 60
Query: 61 ILCNLR 66
+ R
Sbjct: 61 FFSSSR 66
>gi|42572639|ref|NP_974415.1| uncharacterized protein [Arabidopsis thaliana]
gi|22135852|gb|AAM91508.1| putative protein [Arabidopsis thaliana]
gi|23197630|gb|AAN15342.1| putative protein [Arabidopsis thaliana]
gi|332645371|gb|AEE78892.1| uncharacterized protein [Arabidopsis thaliana]
Length = 70
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 52/66 (78%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQLFFT+AFSA PLTLYIPP+R L +FVETME+ E R+Y+ RL+PRAR WSR+LDC
Sbjct: 1 MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60
Query: 61 ILCNLR 66
+ R
Sbjct: 61 FFSSSR 66
>gi|224139858|ref|XP_002323311.1| predicted protein [Populus trichocarpa]
gi|222867941|gb|EEF05072.1| predicted protein [Populus trichocarpa]
Length = 66
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 49/56 (87%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSR 56
MLQLFF VAFSAVPLTLY+PP+RSLNLFVETMED LR++ +YT R YPR R V+SR
Sbjct: 1 MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETMEDVLRQTSLYTVRAYPRIRLVFSR 56
>gi|449499475|ref|XP_004160827.1| PREDICTED: LOW QUALITY PROTEIN: DIS3-like exonuclease 2-like
[Cucumis sativus]
Length = 1159
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 39/62 (62%), Positives = 48/62 (77%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQLFF VAFSAVPLTLY+PP+RSL+LFVET+ED L + I+T R YPR R +SR+
Sbjct: 1 MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
Query: 61 IL 62
+
Sbjct: 61 VF 62
>gi|255571550|ref|XP_002526721.1| conserved hypothetical protein [Ricinus communis]
gi|223533910|gb|EEF35635.1| conserved hypothetical protein [Ricinus communis]
Length = 93
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 48/59 (81%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLD 59
MLQ+FF VAFSAVPLTLY+PP+RSLNLF+ET+E+ LR+S YT + YPR R +SR+
Sbjct: 1 MLQIFFAVAFSAVPLTLYVPPIRSLNLFLETIEELLRQSTSYTIQAYPRIRLAFSRLFS 59
>gi|224087046|ref|XP_002308043.1| predicted protein [Populus trichocarpa]
gi|222854019|gb|EEE91566.1| predicted protein [Populus trichocarpa]
Length = 66
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQLFF VAFSA+PLTLY+PP+RSL+L VET+EDF R++ +YT R YPR R V+S +
Sbjct: 1 MLQLFFAVAFSAMPLTLYVPPIRSLSLLVETIEDFFRQTSLYTVRAYPRIRDVFSSIFRN 60
Query: 61 ILCNLR 66
I R
Sbjct: 61 IFNLFR 66
>gi|225441760|ref|XP_002283404.1| PREDICTED: uncharacterized protein LOC100252006 [Vitis vinifera]
Length = 66
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 46/62 (74%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQL F VAFSAVPLTLY+PP+RSLNLFVET+E R++ +YT Y R R +SR+L
Sbjct: 1 MLQLLFAVAFSAVPLTLYVPPIRSLNLFVETVETLFRQTAVYTLGAYLRVRLAFSRILSS 60
Query: 61 IL 62
L
Sbjct: 61 FL 62
>gi|357509757|ref|XP_003625167.1| hypothetical protein MTR_7g092170 [Medicago truncatula]
gi|355500182|gb|AES81385.1| hypothetical protein MTR_7g092170 [Medicago truncatula]
Length = 66
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 47/62 (75%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQL F VAFSAVPLTLYIPP+RS NLFV T++ FLR+ +++ R +PR R SR+ +
Sbjct: 1 MLQLMFAVAFSAVPLTLYIPPIRSFNLFVGTLQLFLRDYTLFSVRTFPRIRLALSRIFNS 60
Query: 61 IL 62
IL
Sbjct: 61 IL 62
>gi|413943144|gb|AFW75793.1| hypothetical protein ZEAMMB73_515610 [Zea mays]
Length = 71
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQL +AFSA PLTLY+PP RSL+LFVE ME R+ Y++ R R SRVL
Sbjct: 6 MLQLLMALAFSATPLTLYVPPARSLSLFVEAMEAVCRDCGPYSHGAVARFRLGLSRVLAG 65
Query: 61 ILCNLR 66
+ C LR
Sbjct: 66 LACALR 71
>gi|195646986|gb|ACG42961.1| hypothetical protein [Zea mays]
gi|195648981|gb|ACG43958.1| hypothetical protein [Zea mays]
gi|223948363|gb|ACN28265.1| unknown [Zea mays]
gi|414865092|tpg|DAA43649.1| TPA: hypothetical protein ZEAMMB73_523641 [Zea mays]
Length = 66
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQL +AFSA PLTLY+PP+RSL+LFVE ME R+ Y++ R R +SRVL
Sbjct: 1 MLQLLMALAFSAAPLTLYVPPVRSLSLFVEAMEAVCRDCGPYSHGAVARFRLGFSRVLAG 60
Query: 61 ILCNLR 66
+ LR
Sbjct: 61 LARALR 66
>gi|195609490|gb|ACG26575.1| hypothetical protein [Zea mays]
gi|413956857|gb|AFW89506.1| hypothetical protein ZEAMMB73_364226 [Zea mays]
Length = 66
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 42/66 (63%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQL +AFSA PLTLY+PP+RSL+LFVE ME R+ Y++ R R SRVL
Sbjct: 1 MLQLLMALAFSAAPLTLYVPPVRSLSLFVEAMEAVCRDCAPYSHGAVARFRLGLSRVLAG 60
Query: 61 ILCNLR 66
+ LR
Sbjct: 61 LARALR 66
>gi|357113808|ref|XP_003558693.1| PREDICTED: uncharacterized protein LOC100843097 [Brachypodium
distachyon]
Length = 66
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQL +AFSA PLTLY+PP+RSL+LFVE ME RE Y++ R R SR+
Sbjct: 1 MLQLMMALAFSAAPLTLYVPPVRSLSLFVEAMESMCRECAPYSHGAVVRFRLGLSRIFAG 60
Query: 61 ILCNLR 66
+ LR
Sbjct: 61 LARALR 66
>gi|195637174|gb|ACG38055.1| hypothetical protein [Zea mays]
gi|414872658|tpg|DAA51215.1| TPA: hypothetical protein ZEAMMB73_330084 [Zea mays]
Length = 72
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 37/58 (63%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVL 58
MLQL AFSA PLTLY+PP+RSL LFVE ME R+ Y++ + R SRVL
Sbjct: 1 MLQLLMAAAFSAAPLTLYVPPVRSLILFVEAMEVVCRDCGPYSHDVVAHFRVALSRVL 58
>gi|215697307|dbj|BAG91301.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 66
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
MLQL +AFSA PLTLY+PP+RSL+LFVE +E R+ Y+ R R SR+L
Sbjct: 1 MLQLLMALAFSAAPLTLYVPPVRSLSLFVEAIEAVFRDCAPYSQGAIFRFRLGLSRILSG 60
Query: 61 ILCNLR 66
+ LR
Sbjct: 61 LARALR 66
>gi|108706459|gb|ABF94254.1| hypothetical protein LOC_Os03g07870 [Oryza sativa Japonica Group]
Length = 119
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 3 QLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCIL 62
QL +AFSA PLTLY+PP+RSL+LFVE +E R+ Y+ R R SR+L +
Sbjct: 56 QLLMALAFSAAPLTLYVPPVRSLSLFVEAIEAVFRDCAPYSQGAIFRFRLGLSRILSGLA 115
Query: 63 CNLR 66
LR
Sbjct: 116 RALR 119
>gi|222624285|gb|EEE58417.1| hypothetical protein OsJ_09615 [Oryza sativa Japonica Group]
Length = 148
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
+L L +AFSA PLTLY+PP+RSL+LFVE +E R+ Y+ R R SR+L
Sbjct: 83 ILTLLMALAFSAAPLTLYVPPVRSLSLFVEAIEAVFRDCAPYSQGAIFRFRLGLSRILSG 142
Query: 61 ILCNLR 66
+ LR
Sbjct: 143 LARALR 148
>gi|125542609|gb|EAY88748.1| hypothetical protein OsI_10222 [Oryza sativa Indica Group]
Length = 131
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 3 QLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCIL 62
+L +AFSA PLTLY+PP+RSL+LFVE +E R+ Y+ R R SR+L +
Sbjct: 68 KLLMALAFSAAPLTLYLPPVRSLSLFVEAIEAVFRDCAPYSQGAIFRFRLGLSRILSGLA 127
Query: 63 CNLR 66
LR
Sbjct: 128 RALR 131
>gi|116783510|gb|ABK22972.1| unknown [Picea sitchensis]
Length = 75
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVL 58
MLQ+ FSA PLTLY PP R L+ VE +++ E IY R YP+ R R+L
Sbjct: 1 MLQVVLAFCFSASPLTLYFPPCRQLSELVEKIQEIAGEMAIYYRRAYPQIRIACRRIL 58
>gi|116779787|gb|ABK21430.1| unknown [Picea sitchensis]
Length = 78
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPR 49
MLQ+ + FSA PLTLY+PP R L F+ +++ ++ Y YPR
Sbjct: 1 MLQVILALGFSAAPLTLYLPPFRQLTCFLGRVDEVRGDAWDYVRTRYPR 49
>gi|116792767|gb|ABK26489.1| unknown [Picea sitchensis]
Length = 73
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 5 FFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCN 64
F + FSA P L+ P R L+ +E ++++L E+ +Y+ R YP+ + R+L I C
Sbjct: 10 FSVLCFSAAPFALHFPSCRRLSDLLEKIQNWLEETAMYSRRAYPQIQVACRRIL--IRCG 67
Query: 65 L 65
L
Sbjct: 68 L 68
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.336 0.146 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 914,257,814
Number of Sequences: 23463169
Number of extensions: 25092007
Number of successful extensions: 95893
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95866
Number of HSP's gapped (non-prelim): 27
length of query: 68
length of database: 8,064,228,071
effective HSP length: 40
effective length of query: 28
effective length of database: 7,125,701,311
effective search space: 199519636708
effective search space used: 199519636708
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 69 (31.2 bits)