BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043785
         (68 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
           Precursor In Presence Of Ly341495 Antagonist
          Length = 479

 Score = 28.1 bits (61), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 8   VAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCNLR 66
           VA+ A+ L L   P+R  + + +++         Y N   P  R  W +   C L N R
Sbjct: 291 VAYGAITLELASQPVRQFDRYFQSLNP-------YNNHRNPWFRDFWEQKFQCSLQNKR 342


>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           L-glutamate
 pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           L-glutamate
 pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
 pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
 pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3s-Acpd
 pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3s-Acpd
 pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3r-Acpd
 pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3r-Acpd
 pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           2r,4r-Apdc
 pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           2r,4r-Apdc
          Length = 555

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 8   VAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCNLR 66
           VA+ A+ L L   P+R  + + +++         Y N   P  R  W +   C L N R
Sbjct: 292 VAYGAITLELASHPVRQFDRYFQSLNP-------YNNHRNPWFRDFWEQKFQCSLQNKR 343


>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
           Glyoxalase Ii
          Length = 258

 Score = 26.2 bits (56), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 23  RSLNLFVETME-DFLRESRIYTNRLYPRARFVWSR 56
           R +NLF+ T + D + E    T    P ARF W R
Sbjct: 218 RKINLFLRTEDIDLINEINKETILQQPEARFAWLR 252


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.336    0.146    0.461 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,662,211
Number of Sequences: 62578
Number of extensions: 45828
Number of successful extensions: 117
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 4
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 45 (21.9 bits)