Query 043785
Match_columns 68
No_of_seqs 20 out of 22
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 08:18:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4443 Putative transcription 97.1 6.2E-05 1.3E-09 63.2 -1.2 62 1-63 626-687 (694)
2 COG1503 eRF1 Peptide chain rel 70.6 7.6 0.00017 31.4 4.1 49 13-61 28-77 (411)
3 PF01031 Dynamin_M: Dynamin ce 56.8 22 0.00047 25.5 4.0 45 20-64 209-253 (295)
4 smart00872 Alpha-mann_mid Alph 48.4 53 0.0011 19.4 4.2 41 24-64 18-61 (79)
5 TIGR03676 aRF1/eRF1 peptide ch 45.8 21 0.00046 27.9 2.7 47 15-61 23-70 (403)
6 cd01040 globin Globins are hem 41.9 66 0.0014 19.1 3.9 31 27-63 108-138 (140)
7 KOG1693 emp24/gp25L/p24 family 41.7 17 0.00038 27.3 1.6 20 4-23 12-32 (209)
8 PF04005 Hus1: Hus1-like prote 41.6 15 0.00033 26.7 1.3 22 14-35 150-171 (292)
9 KOG4064 Cysteine dioxygenase C 36.1 19 0.00041 26.9 1.0 21 11-31 152-172 (196)
10 PF11444 DUF2895: Protein of u 35.7 24 0.00053 26.0 1.5 20 2-21 24-45 (199)
11 PF09763 Sec3_C: Exocyst compl 35.7 52 0.0011 26.7 3.5 44 18-61 478-527 (701)
12 TIGR00108 eRF peptide chain re 33.8 43 0.00093 26.1 2.7 26 15-40 27-52 (409)
13 PF03484 B5: tRNA synthetase B 32.7 23 0.00051 20.7 0.9 35 3-37 26-66 (70)
14 cd01852 AIG1 AIG1 (avrRpt2-ind 31.6 49 0.0011 21.7 2.3 25 23-47 170-196 (196)
15 KOG3999 Checkpoint 9-1-1 compl 31.4 29 0.00063 27.2 1.4 21 15-35 158-178 (284)
16 PF08283 Gemini_AL1_M: Geminiv 27.0 31 0.00068 23.0 0.8 35 13-48 50-87 (106)
17 cd07462 CRD_FZ10 Cysteine-rich 25.7 51 0.0011 22.3 1.7 24 4-27 54-82 (127)
18 PRK04011 peptide chain release 24.7 78 0.0017 24.7 2.7 22 15-36 30-51 (411)
19 PF00439 Bromodomain: Bromodom 24.4 1.5E+02 0.0032 16.8 3.3 27 22-48 51-77 (84)
20 PF10818 DUF2547: Protein of u 24.3 28 0.00061 23.1 0.2 14 9-23 76-89 (94)
21 TIGR00050 rRNA_methyl_1 RNA me 24.2 1.7E+02 0.0037 20.9 4.2 39 20-58 170-208 (233)
22 PF05427 FIBP: Acidic fibrobla 24.0 1.6E+02 0.0034 23.7 4.3 35 24-61 317-351 (361)
23 cd01067 globin_like superfamil 23.9 1.8E+02 0.0039 17.7 4.5 37 21-61 79-115 (117)
24 PF11225 DUF3024: Protein of u 23.8 65 0.0014 18.7 1.7 17 18-34 34-50 (57)
25 cd04374 RhoGAP_Graf RhoGAP_Gra 23.6 51 0.0011 23.1 1.4 31 17-47 7-50 (203)
26 PRK03158 histidinol-phosphate 23.2 1.6E+02 0.0034 20.8 3.8 40 20-59 39-78 (359)
27 cd07445 CRD_corin_1 One of two 22.9 38 0.00082 23.4 0.6 12 18-29 74-85 (130)
28 PRK07392 threonine-phosphate d 22.9 1.5E+02 0.0033 21.1 3.7 44 15-58 27-70 (360)
29 PF12460 MMS19_C: RNAPII trans 22.8 3.3E+02 0.0071 20.6 5.7 52 4-64 169-220 (415)
30 cd07463 CRD_FZ9 Cysteine-rich 22.2 39 0.00085 22.8 0.6 22 6-27 56-82 (127)
31 cd07466 CRD_FZ7 Cysteine-rich 21.6 41 0.0009 22.6 0.6 20 8-27 58-81 (125)
32 PRK01533 histidinol-phosphate 21.2 1.6E+02 0.0034 21.5 3.6 45 15-59 34-78 (366)
33 cd07465 CRD_FZ1 Cysteine-rich 21.2 42 0.00091 22.7 0.6 21 7-27 57-81 (127)
34 PRK08056 threonine-phosphate d 21.0 1.6E+02 0.0035 21.0 3.6 39 20-58 30-68 (356)
35 PF11130 TraC_F_IV: F pilus as 20.5 1.7E+02 0.0037 19.8 3.5 44 15-58 126-177 (235)
36 cd07441 CRD_SFRP3 Cysteine-ric 20.4 45 0.00098 22.6 0.6 24 6-29 55-84 (126)
37 PRK09459 pspG phage shock prot 20.2 53 0.0011 21.4 0.9 13 1-13 1-13 (76)
38 cd07442 CRD_SFRP4 Cysteine-ric 20.1 46 0.001 22.6 0.6 24 6-29 56-85 (127)
39 cd07888 CRD_corin_2 One of two 20.0 47 0.001 22.2 0.6 22 6-27 55-81 (122)
No 1
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.14 E-value=6.2e-05 Score=63.23 Aligned_cols=62 Identities=13% Similarity=-0.239 Sum_probs=58.8
Q ss_pred ChhHHHHHhhhcccceeccCCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 1 MLQl~favaFSA~PLTLYvPPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
|||.++.-.++|.+.+.||+|+++.+.+++|++++ -|-..|.-+..+|+|++||+-++++..
T Consensus 626 ~~q~~kw~~~~~~g~~ati~~~~~~~~~~~t~~e~-p~~~~~~iql~~~~~~~~s~~~~pf~q 687 (694)
T KOG4443|consen 626 PLQSAQWTNNHLEGGVATIKIPFKPGEPQKTKLEM-PQLDEKQIQLQARIPISTSLPLTPFGQ 687 (694)
T ss_pred chhhhhhhhhccCCCcceeccccCCCcchhhcccc-cchhHHHHHHhhhhhhhcccccCcccc
Confidence 68999999999999999999999999999999999 999999999999999999998877654
No 2
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=70.63 E-value=7.6 Score=31.37 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=39.0
Q ss_pred ccceeccCCchhHHHHHHHHHHHHHh-hhhhhccchhHHHHHHHHHHHHH
Q 043785 13 VPLTLYIPPLRSLNLFVETMEDFLRE-SRIYTNRLYPRARFVWSRVLDCI 61 (68)
Q Consensus 13 ~PLTLYvPPiRsL~lfvet~e~~~re-~~~Ys~r~ypr~R~a~sRil~~~ 61 (68)
-+.||||||=|+++.-+..+.+-..+ +.+=|.+.=++.+-|..++.+.+
T Consensus 28 ~lislyIPp~~qisdv~~~lr~e~s~asniksk~tR~~V~~ai~~~~~rL 77 (411)
T COG1503 28 ELISLYIPPDRQISDVVNRLRDEYSTASNIKSKVTRKNVLSAIESAMQRL 77 (411)
T ss_pred eEEEEecCCCCchHHHHHHHHhhccchhhhhhcCchHHHHhHHHHHHHHH
Confidence 47899999999999999887655443 44556667888899999988876
No 3
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=56.79 E-value=22 Score=25.47 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHh
Q 043785 20 PPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCN 64 (68)
Q Consensus 20 PPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~~ 64 (68)
|....++.=.+.+++++.+...-.-..||+++.+.+.+...++..
T Consensus 209 Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~ 253 (295)
T PF01031_consen 209 PALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEE 253 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHH
Confidence 556666777778888888877778888999999999998887643
No 4
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=48.37 E-value=53 Score=19.42 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHhhhhh-hccchhH--HHHHHHHHHHHHHHh
Q 043785 24 SLNLFVETMEDFLRESRIY-TNRLYPR--ARFVWSRVLDCILCN 64 (68)
Q Consensus 24 sL~lfvet~e~~~re~~~Y-s~r~ypr--~R~a~sRil~~~~~~ 64 (68)
...-.+...|+++-=...+ ....||. +..+|+.++-+.+|.
T Consensus 18 ~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD 61 (79)
T smart00872 18 RLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHD 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcc
Confidence 3334445555555444444 2455665 689999999887763
No 5
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=45.76 E-value=21 Score=27.86 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=29.2
Q ss_pred ceeccCCchhHHHHHHHHHHHHHhhh-hhhccchhHHHHHHHHHHHHH
Q 043785 15 LTLYIPPLRSLNLFVETMEDFLRESR-IYTNRLYPRARFVWSRVLDCI 61 (68)
Q Consensus 15 LTLYvPPiRsL~lfvet~e~~~re~~-~Ys~r~ypr~R~a~sRil~~~ 61 (68)
.+|||||=++++.-...+.+=..+++ +=|+..=-...-|+..+++-|
T Consensus 23 isl~ipp~~~i~~v~~~l~~e~~~a~niks~~~r~~v~~ai~~~~~rl 70 (403)
T TIGR03676 23 ISLYIPPDKQISDVVNQLRDEYSQAANIKSKQTRKNVQSAIESIMQRL 70 (403)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 58999999999998887665554443 223332233345555555544
No 6
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=41.86 E-value=66 Score=19.12 Aligned_cols=31 Identities=23% Similarity=0.575 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.+++++++.+++ +.-+....||..++..+..
T Consensus 108 ~l~~~l~~~~~~------~~~~~~~~aW~~~~~~i~~ 138 (140)
T cd01040 108 ALLEVLAEVLGD------DFTPEVKAAWDKLLDVIAD 138 (140)
T ss_pred HHHHHHHHHhCC------cCCHHHHHHHHHHHHHHHH
Confidence 345555555544 3557789999999887754
No 7
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.66 E-value=17 Score=27.31 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=15.6
Q ss_pred HHHHHhhh-cccceeccCCch
Q 043785 4 LFFTVAFS-AVPLTLYIPPLR 23 (68)
Q Consensus 4 l~favaFS-A~PLTLYvPPiR 23 (68)
++++.+|| |+|||.=+|--+
T Consensus 12 ~lla~~~s~a~elTfeLp~~a 32 (209)
T KOG1693|consen 12 LLLALLFSEASELTFELPDNA 32 (209)
T ss_pred HHHHHHhhhcccEEEEcCCcc
Confidence 46788888 899998887543
No 8
>PF04005 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast. These proteins are known to form a stable complex in vivo []. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control.; PDB: 3A1J_B 3G65_C 3GGR_B.
Probab=41.59 E-value=15 Score=26.70 Aligned_cols=22 Identities=36% Similarity=0.875 Sum_probs=17.9
Q ss_pred cceeccCCchhHHHHHHHHHHH
Q 043785 14 PLTLYIPPLRSLNLFVETMEDF 35 (68)
Q Consensus 14 PLTLYvPPiRsL~lfvet~e~~ 35 (68)
-+.+|+||+++|.-+||+|..+
T Consensus 150 dv~i~LP~l~~l~~~veR~k~~ 171 (292)
T PF04005_consen 150 DVSIYLPPLKQLRSIVERMKNL 171 (292)
T ss_dssp SEEEE-S-HHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHhcc
Confidence 3668999999999999999887
No 9
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=36.06 E-value=19 Score=26.91 Aligned_cols=21 Identities=52% Similarity=0.842 Sum_probs=17.7
Q ss_pred hcccceeccCCchhHHHHHHH
Q 043785 11 SAVPLTLYIPPLRSLNLFVET 31 (68)
Q Consensus 11 SA~PLTLYvPPiRsL~lfvet 31 (68)
-||-|.||+||+-.-|.|-|.
T Consensus 152 ~aVSLHLY~PPfdTC~aFd~r 172 (196)
T KOG4064|consen 152 GAVSLHLYIPPFDTCNAFDER 172 (196)
T ss_pred CceEEEEecCCcchhhhhhhc
Confidence 378899999999988888664
No 10
>PF11444 DUF2895: Protein of unknown function (DUF2895); InterPro: IPR021548 This is a bacterial family of uncharacterised proteins.
Probab=35.71 E-value=24 Score=25.96 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=16.2
Q ss_pred hhHHHHHhhhccc--ceeccCC
Q 043785 2 LQLFFTVAFSAVP--LTLYIPP 21 (68)
Q Consensus 2 LQl~favaFSA~P--LTLYvPP 21 (68)
+.++++.+.+.+| +|+|+||
T Consensus 24 l~~~~~~gw~~aP~~ltih~PP 45 (199)
T PF11444_consen 24 LLLLLIIGWMRAPKRLTIHNPP 45 (199)
T ss_pred HHHHHHHHHHhCCCceEEECCC
Confidence 4566777888888 8999999
No 11
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=35.68 E-value=52 Score=26.70 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=31.7
Q ss_pred ccCCchhHHHHHHHHHHHHHhhhh-h-----hccchhHHHHHHHHHHHHH
Q 043785 18 YIPPLRSLNLFVETMEDFLRESRI-Y-----TNRLYPRARFVWSRVLDCI 61 (68)
Q Consensus 18 YvPPiRsL~lfvet~e~~~re~~~-Y-----s~r~ypr~R~a~sRil~~~ 61 (68)
.+|.|+.+..|++.+|+.+..... + ...+|-++-.|.-..+..+
T Consensus 478 Vl~~i~~fp~f~~~~E~~~~~~~~~~~~r~~vd~aY~kl~~a~~~~l~~~ 527 (701)
T PF09763_consen 478 VLPFIKKFPEFVKRVESMFSGAERAREDRSLVDKAYEKLVRAMFDSLERI 527 (701)
T ss_pred cchHHHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999986655 3 4566766655554444433
No 12
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=33.83 E-value=43 Score=26.14 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=21.2
Q ss_pred ceeccCCchhHHHHHHHHHHHHHhhh
Q 043785 15 LTLYIPPLRSLNLFVETMEDFLRESR 40 (68)
Q Consensus 15 LTLYvPPiRsL~lfvet~e~~~re~~ 40 (68)
.+|||||=++++....++.+-..+++
T Consensus 27 isl~ipp~~~i~~~~~~l~~e~~~a~ 52 (409)
T TIGR00108 27 ISLYIPPDRQISDVAKHLREELSQAS 52 (409)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHhhhh
Confidence 58999999999999988877555544
No 13
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=32.65 E-value=23 Score=20.70 Aligned_cols=35 Identities=14% Similarity=0.345 Sum_probs=23.2
Q ss_pred hHHHHHhhhcccc-----eeccCCchh-HHHHHHHHHHHHH
Q 043785 3 QLFFTVAFSAVPL-----TLYIPPLRS-LNLFVETMEDFLR 37 (68)
Q Consensus 3 Ql~favaFSA~PL-----TLYvPPiRs-L~lfvet~e~~~r 37 (68)
+++=.++|.+.+- +..+|+.|. +..-+.-+||++|
T Consensus 26 ~~L~~lg~~~~~~~~~~~~v~vP~~R~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 26 KILKRLGFKVEKIDGDTLEVTVPSYRFDIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHTT-EEEE-CTTEEEEEEETTSTT-SSHHHHHHHHHH
T ss_pred HHHHHCCCEEEECCCCEEEEEcCCCcCCcCcccHHHHHHHH
Confidence 4556677887774 999999994 4455666677765
No 14
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=31.56 E-value=49 Score=21.73 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHh--hhhhhccch
Q 043785 23 RSLNLFVETMEDFLRE--SRIYTNRLY 47 (68)
Q Consensus 23 RsL~lfvet~e~~~re--~~~Ys~r~y 47 (68)
.++..++++||+++.| .+.|+.+.|
T Consensus 170 ~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 170 QQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 4678899999999997 567887643
No 15
>KOG3999 consensus Checkpoint 9-1-1 complex, HUS1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.45 E-value=29 Score=27.24 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=18.8
Q ss_pred ceeccCCchhHHHHHHHHHHH
Q 043785 15 LTLYIPPLRSLNLFVETMEDF 35 (68)
Q Consensus 15 LTLYvPPiRsL~lfvet~e~~ 35 (68)
+.+++|+.+.|.-||++|.++
T Consensus 158 l~I~lP~l~~lk~~vdk~Kni 178 (284)
T KOG3999|consen 158 LSIQLPDLNQLKSFVDKMKNI 178 (284)
T ss_pred cceeCCCHHHHHHHHHHhhcc
Confidence 458999999999999999865
No 16
>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. This is the central region of the geminivirus rep proteins []. It is found C-terminal to PF00799 from PFAM and is thought to be responsible for oligomerisation.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Probab=27.00 E-value=31 Score=22.97 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=25.2
Q ss_pred ccceeccCCch--hHHHHHHHHHHHHHhhhhhhccc-hh
Q 043785 13 VPLTLYIPPLR--SLNLFVETMEDFLRESRIYTNRL-YP 48 (68)
Q Consensus 13 ~PLTLYvPPiR--sL~lfvet~e~~~re~~~Ys~r~-yp 48 (68)
-|-.-|+||.- |.+..-|.|++|+.|- +|+..+ ||
T Consensus 50 ~~~e~y~~Pf~~ssf~~~pe~i~~W~~~n-v~~~aa~rp 87 (106)
T PF08283_consen 50 PPPEPYVSPFPLSSFLQVPEEIEEWADEN-VYSVAAARP 87 (106)
T ss_pred CCCccccCCCCChhhccCChHHHHHHHhc-cCcccccCC
Confidence 46678999998 6667789999999864 444433 44
No 17
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 10 (Fz10) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. The cellular functon of Fz10 is unknown.
Probab=25.73 E-value=51 Score=22.31 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=16.1
Q ss_pred HHHHHhhhccccee-----ccCCchhHHH
Q 043785 4 LFFTVAFSAVPLTL-----YIPPLRSLNL 27 (68)
Q Consensus 4 l~favaFSA~PLTL-----YvPPiRsL~l 27 (68)
+-|-++...+|.=. -|||+|||=.
T Consensus 54 l~~FlCsl~~P~C~~~~~~~i~PCRslCe 82 (127)
T cd07462 54 LKFFLCSLYAPMCTEQVSTPIPACRVMCE 82 (127)
T ss_pred hHHHHHhccccccCCCCCCcCCccHHHHH
Confidence 34556777777543 3899999853
No 18
>PRK04011 peptide chain release factor 1; Provisional
Probab=24.75 E-value=78 Score=24.74 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=17.3
Q ss_pred ceeccCCchhHHHHHHHHHHHH
Q 043785 15 LTLYIPPLRSLNLFVETMEDFL 36 (68)
Q Consensus 15 LTLYvPPiRsL~lfvet~e~~~ 36 (68)
.||||||=|+.+.=...+++=.
T Consensus 30 iSlyip~~~~i~~~~~~l~~e~ 51 (411)
T PRK04011 30 ISLYIPPGRPISDVVNQLRQEY 51 (411)
T ss_pred EEEEECCCCcHHHHHHHHHHHH
Confidence 5899999999988776665544
No 19
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=24.37 E-value=1.5e+02 Score=16.79 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHHhhhhhhccchh
Q 043785 22 LRSLNLFVETMEDFLRESRIYTNRLYP 48 (68)
Q Consensus 22 iRsL~lfvet~e~~~re~~~Ys~r~yp 48 (68)
.+|+..|+..|+-++..+..|....-+
T Consensus 51 Y~s~~~f~~Dv~~i~~Na~~yn~~~s~ 77 (84)
T PF00439_consen 51 YKSIEEFEADVRLIFQNARRYNPPDSP 77 (84)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred hhhHHHHHHHHHHHHHHHHHHCCCcCH
Confidence 357888888888888888887665433
No 20
>PF10818 DUF2547: Protein of unknown function (DUF2547); InterPro: IPR020508 This entry contains proteins with no known function.
Probab=24.31 E-value=28 Score=23.05 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.9
Q ss_pred hhhcccceeccCCch
Q 043785 9 AFSAVPLTLYIPPLR 23 (68)
Q Consensus 9 aFSA~PLTLYvPPiR 23 (68)
-|.+.+++.+ ||||
T Consensus 76 ~F~~~~~~~~-aPIR 89 (94)
T PF10818_consen 76 HFFASSFRFH-APIR 89 (94)
T ss_pred eeeeccccCC-CCcc
Confidence 4888889888 9998
No 21
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=24.23 E-value=1.7e+02 Score=20.85 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHH
Q 043785 20 PPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVL 58 (68)
Q Consensus 20 PPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil 58 (68)
++...+..|.+.+++++.+...|....-.+.-.-++|++
T Consensus 170 a~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lr~l~ 208 (233)
T TIGR00050 170 ATTDQLELLLEHLEEILLSLGFIPEHKIRRVMRKFRRLY 208 (233)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 567889999999999999988776555444444455555
No 22
>PF05427 FIBP: Acidic fibroblast growth factor binding (FIBP) ; InterPro: IPR008614 Acidic fibroblast growth factor (aFGF) intracellular binding protein (FIBP) is a protein found mainly in the nucleus that is thought to be involved in the intracellular function of aFGF [].; GO: 0017134 fibroblast growth factor binding
Probab=23.97 E-value=1.6e+02 Score=23.67 Aligned_cols=35 Identities=23% Similarity=0.523 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHH
Q 043785 24 SLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCI 61 (68)
Q Consensus 24 sL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~ 61 (68)
.++.|.+.+.+-..+...... ++++.+|.|.+..+
T Consensus 317 dl~~FL~ay~~s~~~l~~~r~---~~l~~~W~RYm~vi 351 (361)
T PF05427_consen 317 DLRLFLSAYTESALDLDVFRH---QRLQSVWERYMKVI 351 (361)
T ss_pred HHHHHHHHHHHHHHhCCccch---HhHHHHHHHHHHHH
Confidence 467888888888887766444 89999999998766
No 23
>cd01067 globin_like superfamily containing globins and truncated hemoglobins
Probab=23.92 E-value=1.8e+02 Score=17.71 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=28.2
Q ss_pred CchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHH
Q 043785 21 PLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCI 61 (68)
Q Consensus 21 PiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~ 61 (68)
+--.++.|.+-+.+.+++...|+ ++...||..+++..
T Consensus 79 ~~~~f~~~~~~L~~~l~~~~~~~----~~~~~Aw~~~~~~~ 115 (117)
T cd01067 79 PPEVFTAFWKLLEEYLGKKTTLD----EPTIQAWHEIGREF 115 (117)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhh
Confidence 45567788888888888876533 78899999998764
No 24
>PF11225 DUF3024: Protein of unknown function (DUF3024); InterPro: IPR021388 This entry is represented by Bacteriophage 933W, L0084. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.82 E-value=65 Score=18.67 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=13.5
Q ss_pred ccCCchhHHHHHHHHHH
Q 043785 18 YIPPLRSLNLFVETMED 34 (68)
Q Consensus 18 YvPPiRsL~lfvet~e~ 34 (68)
+.|+.++|..+++-|++
T Consensus 34 ~~~~~~~L~~~l~~i~~ 50 (57)
T PF11225_consen 34 PLPESKDLEALLREIEK 50 (57)
T ss_pred CcccCCCHHHHHHHHhh
Confidence 35799999999887764
No 25
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.56 E-value=51 Score=23.15 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=23.9
Q ss_pred eccCCchhHHH-------------HHHHHHHHHHhhhhhhccch
Q 043785 17 LYIPPLRSLNL-------------FVETMEDFLRESRIYTNRLY 47 (68)
Q Consensus 17 LYvPPiRsL~l-------------fvet~e~~~re~~~Ys~r~y 47 (68)
.|+-|+|+++. ||++.=+.+++-++.+.+.|
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~~~~~iv~~ci~~le~~gl~~EGIF 50 (203)
T cd04374 7 VYHSPGRLQSEVEGEAQLDDIGFKFVRKCIEAVETRGINEQGLY 50 (203)
T ss_pred cccCccccccccccccccccccHHHHHHHHHHHHHcCCCCCCee
Confidence 58899999887 78777777777777766665
No 26
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=23.19 E-value=1.6e+02 Score=20.85 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=28.8
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 043785 20 PPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLD 59 (68)
Q Consensus 20 PPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~ 59 (68)
||+-......|++++.+++..-|....++.+|.++.+.+.
T Consensus 39 ~~~~~~~~v~~a~~~~~~~~~~~p~~g~~~lr~~ia~~~~ 78 (359)
T PRK03158 39 NPYGPSPKVKEAIAAHLDELALYPDGYAPELRTKVAKHLG 78 (359)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHhC
Confidence 4444445567777777777666766778999999998773
No 27
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the first (N-terminal) CRD.
Probab=22.94 E-value=38 Score=23.37 Aligned_cols=12 Identities=25% Similarity=0.132 Sum_probs=8.9
Q ss_pred ccCCchhHHHHH
Q 043785 18 YIPPLRSLNLFV 29 (68)
Q Consensus 18 YvPPiRsL~lfv 29 (68)
-|||+|||=.=|
T Consensus 74 ~i~PCRslCe~v 85 (130)
T cd07445 74 GLLPCRSFCEAA 85 (130)
T ss_pred cCCCCHHHHHHH
Confidence 489999985433
No 28
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=22.91 E-value=1.5e+02 Score=21.10 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=34.0
Q ss_pred ceeccCCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHH
Q 043785 15 LTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVL 58 (68)
Q Consensus 15 LTLYvPPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil 58 (68)
|..=.+|+.......+++.+.+.+..-|....++.+|.|+.+.+
T Consensus 27 l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~~~~~~Lr~aia~~~ 70 (360)
T PRK07392 27 FSASINPLGPPESVIAAIQSALSALRHYPDPDYRELRLALAQHH 70 (360)
T ss_pred eCCcCCCCCCCHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHh
Confidence 55555777777888888888777766788767889999988876
No 29
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=22.85 E-value=3.3e+02 Score=20.58 Aligned_cols=52 Identities=12% Similarity=0.280 Sum_probs=40.0
Q ss_pred HHHHHhhhcccceeccCCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHh
Q 043785 4 LFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCN 64 (68)
Q Consensus 4 l~favaFSA~PLTLYvPPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~~ 64 (68)
.+++-..++.+-...+| +.+.+++.+-++.-.+.. +..|.+..+++..+.+-
T Consensus 169 ~l~~~il~~l~~~~~~~---~~~~ll~~l~~~~~~~~~------~~~~~~~~~~la~LvNK 220 (415)
T PF12460_consen 169 ILFSAILCSLRKDVSLP---DLEELLQSLLNLALSSED------EFSRLAALQLLASLVNK 220 (415)
T ss_pred HHHHHHHHcCCcccCcc---CHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHHcC
Confidence 45777888999999999 777777777777655443 78889999988877654
No 30
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz9 may play a signaling role in lymphoid development and maturation, particularly at points where B cells undergo self-renewal prior to further differentiation.
Probab=22.17 E-value=39 Score=22.78 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=14.2
Q ss_pred HHHhhhccccee-----ccCCchhHHH
Q 043785 6 FTVAFSAVPLTL-----YIPPLRSLNL 27 (68)
Q Consensus 6 favaFSA~PLTL-----YvPPiRsL~l 27 (68)
|-++-..+|.=. -|||+|||=.
T Consensus 56 ~FlCS~~~P~C~~~~~~~i~PCRslCe 82 (127)
T cd07463 56 FFLCSLYAPMCTDQVSTSIPACRPMCE 82 (127)
T ss_pred HHhhhccccccCCCCCCcCCccHHHHH
Confidence 445566666432 4899999853
No 31
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 7 (Fz7) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=21.60 E-value=41 Score=22.62 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=12.2
Q ss_pred Hhhhcccc----eeccCCchhHHH
Q 043785 8 VAFSAVPL----TLYIPPLRSLNL 27 (68)
Q Consensus 8 vaFSA~PL----TLYvPPiRsL~l 27 (68)
++-..+|. .--|||+|||=.
T Consensus 58 lCsl~~P~C~~~~~~i~PCRslCe 81 (125)
T cd07466 58 LCSMYAPVCTVLEQAIPPCRSLCE 81 (125)
T ss_pred hhhccCCccCCCCCcCCCcHHHHH
Confidence 44444552 235899999843
No 32
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=21.25 E-value=1.6e+02 Score=21.55 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=32.8
Q ss_pred ceeccCCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 043785 15 LTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLD 59 (68)
Q Consensus 15 LTLYvPPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~ 59 (68)
|..=.||+..-....|.|.+...+...|...-++++|.++++.+.
T Consensus 34 l~~nen~~~~~~~v~~a~~~~~~~~~~Yp~~g~~~Lr~aia~~~~ 78 (366)
T PRK01533 34 LASNENPFGCSPRVLDELQKSWLDHALYPDGGATTLRQTIANKLH 78 (366)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHhcCcCCCCCHHHHHHHHHHHhC
Confidence 444446666666677888777666667877788999999998763
No 33
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata.
Probab=21.20 E-value=42 Score=22.66 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=12.8
Q ss_pred HHhhhcccc----eeccCCchhHHH
Q 043785 7 TVAFSAVPL----TLYIPPLRSLNL 27 (68)
Q Consensus 7 avaFSA~PL----TLYvPPiRsL~l 27 (68)
-++-.-+|. .--+||+|||=.
T Consensus 57 FLCSl~~P~C~~~~~~i~PCRslCe 81 (127)
T cd07465 57 FLCSMYAPVCTVLEQALPPCRSLCE 81 (127)
T ss_pred HhhhccCCcccCCCCcCCccHHHHH
Confidence 344444552 235899999853
No 34
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=21.02 E-value=1.6e+02 Score=21.00 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=26.7
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHH
Q 043785 20 PPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVL 58 (68)
Q Consensus 20 PPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil 58 (68)
||.-.-.-.+|.|.+.+++..-|....++++|.+..+.+
T Consensus 30 ~~~~~p~~~~~a~~~~~~~~~~y~~~~~~~lr~~ia~~~ 68 (356)
T PRK08056 30 NPLGMPVSLKRAIIDNLDCAERYPDVEYRHLHQALARHH 68 (356)
T ss_pred CCCCCCHHHHHHHHHHHHhcccCcCccHHHHHHHHHHHh
Confidence 444433445677766666666677666899999998876
No 35
>PF11130 TraC_F_IV: F pilus assembly Type-IV secretion system for plasmid transfer
Probab=20.52 E-value=1.7e+02 Score=19.82 Aligned_cols=44 Identities=30% Similarity=0.573 Sum_probs=34.3
Q ss_pred ceeccC-------CchhHHHHHHHHHHHHHhhhhhhccchhHHHHHH-HHHH
Q 043785 15 LTLYIP-------PLRSLNLFVETMEDFLRESRIYTNRLYPRARFVW-SRVL 58 (68)
Q Consensus 15 LTLYvP-------PiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~-sRil 58 (68)
++..+| ++..++...+++++-++.+.+..++.=|.-=+.| +|+|
T Consensus 126 is~~~p~~~~~~~~~~~l~~~~~~~~~~L~~~gi~~~~~~~~~l~~~l~~~~ 177 (235)
T PF11130_consen 126 ISVKVPGSKPSEEEIEELNELRERLESSLRSAGIPPRRLDPEDLISWLRRIF 177 (235)
T ss_pred EEEEecCCcCCccHHHHHHHHHHHHHHHHHHCCCccEEcCHHHHHHHHHHHc
Confidence 345566 6888999999999999999999999988764443 4444
No 36
>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), which plays important roles in embryogenesis and postnatal development as an antagonist of Wnt proteins, key players in a number of fundamental cellular processes. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled proteins (Fz), thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP3 regulates Wnt signaling activity in bone development and homeostasis. It is also involved in the control of planar cell polarity.
Probab=20.40 E-value=45 Score=22.63 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=14.4
Q ss_pred HHHhhhccccee---c---cCCchhHHHHH
Q 043785 6 FTVAFSAVPLTL---Y---IPPLRSLNLFV 29 (68)
Q Consensus 6 favaFSA~PLTL---Y---vPPiRsL~lfv 29 (68)
|-++-.-+|.=. + |||+|||=.=|
T Consensus 55 ~FLCS~~~P~C~~~~~~~~i~PCRslCe~v 84 (126)
T cd07441 55 FFLCAMYAPICTIDFQHEPIKPCKSVCERA 84 (126)
T ss_pred hHHhhccCcccCCCCCCCcCCccHHHHHHH
Confidence 334555566433 2 99999985433
No 37
>PRK09459 pspG phage shock protein G; Reviewed
Probab=20.21 E-value=53 Score=21.36 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=10.2
Q ss_pred ChhHHHHHhhhcc
Q 043785 1 MLQLFFTVAFSAV 13 (68)
Q Consensus 1 MLQl~favaFSA~ 13 (68)
|+|++|.++|.++
T Consensus 1 M~EllFvl~F~~~ 13 (76)
T PRK09459 1 MLELLFVIGFFVM 13 (76)
T ss_pred ChhhHHHHHHHHH
Confidence 7888888888764
No 38
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 4 (SFRP4), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=20.06 E-value=46 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.258 Sum_probs=15.1
Q ss_pred HHHhhhccccee------ccCCchhHHHHH
Q 043785 6 FTVAFSAVPLTL------YIPPLRSLNLFV 29 (68)
Q Consensus 6 favaFSA~PLTL------YvPPiRsL~lfv 29 (68)
|-++-.-+|.=- -|||+|||=.=|
T Consensus 56 ~FLCS~~~P~C~~~~~~~~i~PCRslCe~v 85 (127)
T cd07442 56 FFLCAMYAPICTLEFLYDPIKPCRSVCQRA 85 (127)
T ss_pred HHHHhhcCCccCCCCCCCcCCccHHHHHHH
Confidence 445555666532 499999985433
No 39
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=20.03 E-value=47 Score=22.15 Aligned_cols=22 Identities=41% Similarity=0.416 Sum_probs=14.3
Q ss_pred HHHhhhccccee-----ccCCchhHHH
Q 043785 6 FTVAFSAVPLTL-----YIPPLRSLNL 27 (68)
Q Consensus 6 favaFSA~PLTL-----YvPPiRsL~l 27 (68)
|-++-..+|-=. -+||+|||=.
T Consensus 55 ~FlCsl~~P~C~~~~~~~i~PCRslCe 81 (122)
T cd07888 55 FFACTILVPKCDPVTQQRIPPCRSLCR 81 (122)
T ss_pred HHHHhccCccccCCCCCCCCCcHHHHH
Confidence 445666666443 3899999853
Done!