Query 043785
Match_columns 68
No_of_seqs 20 out of 22
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 14:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q1f_A Neuroglobin; globin fol 64.3 14 0.00047 22.2 4.5 32 26-63 111-142 (151)
2 2wy4_A Single domain haemoglob 63.0 11 0.00036 22.5 3.8 16 48-63 113-128 (140)
3 1gdj_A Leghemoglobin (deoxy); 59.6 18 0.00063 21.7 4.5 32 26-63 112-143 (153)
4 1bin_A Leghemoglobin A; heme, 58.6 20 0.00069 21.1 4.5 31 27-63 108-138 (143)
5 3ubc_A Hemoglobin-like flavopr 55.1 25 0.00086 20.8 4.5 32 26-63 96-127 (131)
6 2r80_B Hemoglobin subunit beta 55.0 24 0.00082 21.6 4.5 32 26-63 108-139 (146)
7 1jf3_A Monomer hemoglobin comp 54.4 26 0.00088 21.1 4.5 32 26-63 108-139 (147)
8 3szr_A Interferon-induced GTP- 51.7 17 0.00057 27.8 4.0 44 20-63 443-486 (608)
9 1hlb_A Hemoglobin (deoxy); oxy 51.6 21 0.00073 21.9 3.9 32 26-63 120-151 (158)
10 2vhb_A Hemoglobin; heme, respi 50.7 31 0.0011 20.7 4.5 31 26-62 100-130 (146)
11 1wmu_A Hemoglobin D alpha chai 49.9 32 0.0011 20.8 4.5 32 26-63 103-134 (141)
12 1sct_B Hemoglobin II (carbonmo 49.7 28 0.00096 21.2 4.2 32 26-63 118-149 (151)
13 2w72_C Human hemoglobin A; iro 49.6 21 0.00072 21.5 3.6 32 26-63 103-134 (141)
14 2w72_B Human hemoglobin A; iro 49.2 34 0.0012 20.9 4.5 32 26-63 108-139 (146)
15 1sct_A Hemoglobin II (carbonmo 46.3 35 0.0012 20.8 4.3 32 26-63 117-148 (150)
16 3e20_C Eukaryotic peptide chai 46.2 14 0.00048 27.9 2.8 23 15-37 40-62 (441)
17 1v4x_B Hemoglobin beta chain; 45.8 40 0.0014 20.7 4.5 32 26-63 108-139 (146)
18 2aa1_B Hemoglobin beta-C chain 45.2 42 0.0014 20.7 4.5 32 26-63 108-139 (146)
19 3d1k_B Hemoglobin subunit beta 45.1 42 0.0014 20.6 4.5 32 26-63 108-139 (146)
20 1gcv_B Hemoglobin; oxygen stor 44.3 44 0.0015 20.6 4.5 32 26-63 98-129 (136)
21 1out_B Hemoglobin I; heme, oxy 44.0 45 0.0015 20.5 4.5 32 26-63 108-139 (146)
22 3zvr_A Dynamin-1; hydrolase, D 43.7 29 0.001 28.3 4.5 44 20-64 443-486 (772)
23 1cg5_B Protein (hemoglobin); o 42.8 46 0.0016 20.6 4.5 32 26-63 103-134 (141)
24 4hrt_B Hemoglobin B chain; oxy 42.5 48 0.0016 20.4 4.5 32 26-63 119-150 (152)
25 1xq5_A Hemoglobin alpha-1 chai 42.5 38 0.0013 20.7 4.0 31 27-63 106-136 (143)
26 1jeb_A Hemoglobin zeta chain; 42.3 32 0.0011 20.7 3.6 32 26-63 104-135 (142)
27 3bom_B Hemoglobin subunit beta 41.0 52 0.0018 20.2 4.5 33 26-63 108-140 (147)
28 2r80_A Hemoglobin subunit alph 40.8 34 0.0012 20.9 3.6 32 26-63 103-134 (141)
29 2dc3_A Cytoglobin; myoglobin, 40.7 42 0.0014 21.7 4.2 32 26-63 132-163 (193)
30 3d1k_A Hemoglobin subunit alph 39.5 37 0.0013 20.6 3.6 31 27-63 105-135 (142)
31 2oif_A Horvu GLB1, non-legume 38.5 42 0.0014 20.4 3.7 31 27-63 121-152 (162)
32 1out_A Hemoglobin I; heme, oxy 38.3 39 0.0013 20.7 3.6 31 27-63 106-136 (143)
33 4hrt_A Globin-2 A chain; oxyge 37.7 63 0.0022 19.8 4.5 31 26-62 117-147 (150)
34 3bom_A Hemoglobin subunit alph 37.3 42 0.0014 20.4 3.6 31 27-63 106-136 (143)
35 1spg_A Hemoglobin; carbon mono 36.8 44 0.0015 20.5 3.7 31 27-63 107-137 (144)
36 1ith_A Hemoglobin (cyano Met); 36.4 44 0.0015 20.1 3.5 29 27-63 110-138 (141)
37 1a6m_A Myoglobin; heme protein 36.3 54 0.0018 20.1 4.0 32 26-63 109-140 (151)
38 4b4y_A Neuroglobin; transport 36.2 42 0.0014 20.6 3.5 31 27-63 119-150 (154)
39 1tu9_A Hypothetical protein PA 35.6 52 0.0018 19.5 3.8 30 27-63 97-126 (134)
40 3pt8_B Hemoglobin III; oxygen 32.8 45 0.0015 20.2 3.2 29 27-63 114-142 (152)
41 1lhs_A Myoglobin; oxygen stora 32.6 56 0.0019 20.1 3.6 31 27-63 110-140 (153)
42 2bk9_A CG9734-PA; oxygen trans 30.4 73 0.0025 19.3 3.9 29 27-63 112-140 (153)
43 1x46_A Globin chain, hemoglobi 28.1 77 0.0026 19.1 3.7 30 27-63 115-144 (150)
44 1c7c_A Protein (deoxyhemoglobi 28.0 65 0.0022 21.8 3.6 32 26-63 103-134 (283)
45 2c0k_A Hemoglobin; oxygen tran 26.4 80 0.0027 19.3 3.5 16 48-63 126-141 (151)
46 1x9f_D Globin C, hemoglobin ch 26.2 1E+02 0.0035 18.4 4.0 29 26-63 109-137 (140)
47 1x9f_B Erythrocruorin, globin 23.9 91 0.0031 18.8 3.4 29 26-63 111-139 (145)
48 3n70_A Transport activator; si 22.5 21 0.00073 21.2 0.3 11 13-23 135-145 (145)
49 1cg5_A Protein (hemoglobin); o 22.3 99 0.0034 18.7 3.4 30 27-63 105-134 (141)
50 3ljb_A Interferon-induced GTP- 21.3 1.2E+02 0.0041 21.6 4.1 45 19-63 102-146 (271)
51 2veb_A Protoglobin; hemoprotei 20.9 54 0.0019 22.8 2.2 47 12-59 130-179 (195)
No 1
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=64.26 E-value=14 Score=22.18 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++.. + |.+..||...++.+..
T Consensus 111 ~~ll~~l~~~lg~~~--t----~e~~~AW~~~~~~v~~ 142 (151)
T 1q1f_A 111 ESLLYMLEKSLGPDF--T----PATRTAWSRLYGAVVQ 142 (151)
T ss_dssp HHHHHHHHHHHGGGS--C----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC--C----HHHHHHHHHHHHHHHH
Confidence 356778888777643 2 8889999999987754
No 2
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=63.02 E-value=11 Score=22.50 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 043785 48 PRARFVWSRVLDCILC 63 (68)
Q Consensus 48 pr~R~a~sRil~~~~~ 63 (68)
|.+..||...+..+..
T Consensus 113 ~e~~~AW~~~~~~ia~ 128 (140)
T 2wy4_A 113 EATLKAWEVAYGKIAK 128 (140)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987754
No 3
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A* 1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A* 2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Probab=59.61 E-value=18 Score=21.75 Aligned_cols=32 Identities=9% Similarity=0.266 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++.. + |.+..||...+..+..
T Consensus 112 ~~Ll~~l~~~lg~~~--t----~e~~~AW~~~~~~i~~ 143 (153)
T 1gdj_A 112 EAILKTIKEVVGAKW--S----EELNSAWTIAYDELAI 143 (153)
T ss_dssp HHHHHHHHHHHGGGC--C----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC--C----HHHHHHHHHHHHHHHH
Confidence 356777777777542 2 8899999999987743
No 4
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=58.57 E-value=20 Score=21.15 Aligned_cols=31 Identities=10% Similarity=0.304 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.+++. ++ |.+..||...++.+..
T Consensus 108 ~Ll~~l~~~lg~~--~t----~e~~~AW~~~~~~ia~ 138 (143)
T 1bin_A 108 ALLKTIKAAVGDK--WS----DELSRAWEVAYDELAA 138 (143)
T ss_dssp HHHHHHHHHHGGG--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--CC----HHHHHHHHHHHHHHHH
Confidence 4566666666543 22 8899999999987754
No 5
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=55.14 E-value=25 Score=20.79 Aligned_cols=32 Identities=16% Similarity=0.533 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..+++++++.+++. ++ |.+..||...++.+..
T Consensus 96 ~~Ll~~l~~~lg~~--~t----~e~~~AW~~~~~~va~ 127 (131)
T 3ubc_A 96 DCLLKSIQEYLGQG--FT----EEAKAAWTKVYGIAAQ 127 (131)
T ss_dssp HHHHHHHHHHHGGG--SC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc--CC----HHHHHHHHHHHHHHHH
Confidence 45677888887765 22 7889999999987754
No 6
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=55.00 E-value=24 Score=21.57 Aligned_cols=32 Identities=13% Similarity=0.421 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++.. + |.+..||...++.+..
T Consensus 108 ~~ll~~l~~~lg~~~--t----~e~~~AW~~~~~~va~ 139 (146)
T 2r80_B 108 DILVIILAAHFGKDF--T----PECQAAWQKLVRVVAH 139 (146)
T ss_dssp HHHHHHHHHHHGGGS--C----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccC--C----HHHHHHHHHHHHHHHH
Confidence 457778888777653 3 7899999999987754
No 7
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=54.43 E-value=26 Score=21.09 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...+..+..
T Consensus 108 ~~Ll~~l~~~lg~~--~t----~e~~~AW~~~~~~v~~ 139 (147)
T 1jf3_A 108 ASLLSAMEHRIGGK--MN----AAAKDAWAAAYGDISG 139 (147)
T ss_dssp HHHHHHHHHHHGGG--SC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc--CC----HHHHHHHHHHHHHHHH
Confidence 35666777766643 22 7899999999987743
No 8
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=51.68 E-value=17 Score=27.77 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=34.5
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 20 PPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 20 PPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
|+.+.+..-.|.++.++.+...-.-..||+++.+..++...++.
T Consensus 443 Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~ 486 (608)
T 3szr_A 443 PAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRA 486 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 55666767778888888876666678999999999999887754
No 9
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=51.60 E-value=21 Score=21.88 Aligned_cols=32 Identities=13% Similarity=0.477 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...++.+..
T Consensus 120 ~~ll~~l~~~lg~~--~t----~e~~~AW~~~~~~v~~ 151 (158)
T 1hlb_A 120 KVLMEALQAELGSD--FN----EKTRDAWAKAFSVVQA 151 (158)
T ss_dssp HHHHHHHHHHHTTC--CC----THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC--CC----HHHHHHHHHHHHHHHH
Confidence 34566777766643 22 7899999999987754
No 10
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=50.65 E-value=31 Score=20.66 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCIL 62 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~ 62 (68)
..++++|++.+++. ++ |.+..||...++.+.
T Consensus 100 ~~Ll~~l~~~lg~~--~t----~e~~~AW~~~~~~i~ 130 (146)
T 2vhb_A 100 QELLGAIKEVLGDA--AT----DDILDAWGKAYGVIA 130 (146)
T ss_dssp HHHHHHHHHHHGGG--CC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc--CC----HHHHHHHHHHHHHHH
Confidence 34566777766653 22 788999999988764
No 11
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=49.89 E-value=32 Score=20.77 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...++.+..
T Consensus 103 ~~ll~~l~~~lg~~--~t----~e~~~AW~~~~~~v~~ 134 (141)
T 1wmu_A 103 HCFQVVLGAHLGRE--YT----PQVQVAYDKFLAAVSA 134 (141)
T ss_dssp HHHHHHHHHHHGGG--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc--CC----HHHHHHHHHHHHHHHH
Confidence 45677777777754 22 7889999999987754
No 12
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=49.72 E-value=28 Score=21.22 Aligned_cols=32 Identities=6% Similarity=0.259 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...++.+..
T Consensus 118 ~~Ll~~l~~~lg~~--~t----~e~~~AW~~~~~~va~ 149 (151)
T 1sct_B 118 GPLRQTLKARMGNY--FD----EDTVAAWASLVAVVQA 149 (151)
T ss_dssp HHHHHHHHHHHGGG--CC----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccc--CC----HHHHHHHHHHHHHHHH
Confidence 45777888877764 33 8899999999987653
No 13
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=49.61 E-value=21 Score=21.55 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...++.+..
T Consensus 103 ~~Ll~~l~~~lg~~--~t----~e~~~AW~~~~~~i~~ 134 (141)
T 2w72_C 103 HCLLVTLAAHLPAE--FT----PAVHASLDKFLASVST 134 (141)
T ss_dssp HHHHHHHHHHCTTT--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc--CC----HHHHHHHHHHHHHHHH
Confidence 35666777766654 22 8899999999987754
No 14
>2w72_B Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7w_B* 1qi8_B* 1j7y_B* 1dxu_B* 1a0u_B* 1a0z_B* 1gli_B* 1j7s_B* 1o1l_B* 1o1n_B* 1y0t_B* 1y0w_B* 1o1o_B* 1ye2_B* 1y35_B* 1y22_B* 1ye0_B* 1dxt_B* 1y5f_B* 1ird_B* ...
Probab=49.20 E-value=34 Score=20.88 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...++.+..
T Consensus 108 ~~Ll~~l~~~lg~~--~t----~e~~~AW~~~~~~va~ 139 (146)
T 2w72_B 108 NVLVCVLAHHFGKE--FT----PPVQAAYQKVVAGVAN 139 (146)
T ss_dssp HHHHHHHHHHHGGG--SC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc--CC----HHHHHHHHHHHHHHHH
Confidence 35677777777754 33 8899999999987754
No 15
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=46.34 E-value=35 Score=20.83 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...++.+..
T Consensus 117 ~~ll~~l~~~lg~~--~t----~e~~~AW~k~~~~va~ 148 (150)
T 1sct_A 117 EPMKETLKARMGNY--YS----DDVAGAWAALVGVVQA 148 (150)
T ss_dssp HHHHHHHHHHHGGG--CC----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccc--CC----HHHHHHHHHHHHHHHH
Confidence 45778888877764 22 8899999999987653
No 16
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=46.19 E-value=14 Score=27.92 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=18.0
Q ss_pred ceeccCCchhHHHHHHHHHHHHH
Q 043785 15 LTLYIPPLRSLNLFVETMEDFLR 37 (68)
Q Consensus 15 LTLYvPPiRsL~lfvet~e~~~r 37 (68)
.+|||||=++++.-...+.+=..
T Consensus 40 isl~ipp~~~i~~v~~~l~~e~~ 62 (441)
T 3e20_C 40 ITLIIPPGEQISRYSNMLAEEYG 62 (441)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHHh
Confidence 58999999999988776654333
No 17
>1v4x_B Hemoglobin beta chain; oxygen transport, heme, respiratory protein, erythrocyte, ROOT effect, SWIM bladder, oxygen storage/transport complex; HET: HEM; 1.60A {Thunnus thynnus} SCOP: a.1.1.2 PDB: 1v4u_B* 1v4w_B*
Probab=45.81 E-value=40 Score=20.65 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++.. + |.+..||...++.+..
T Consensus 108 ~~ll~~l~~~lg~~~--t----~e~~~AW~k~~~~va~ 139 (146)
T 1v4x_B 108 DCLTVVIAANLGDAF--T----VETQCAFQKFLAVVVF 139 (146)
T ss_dssp HHHHHHHHHHHGGGS--C----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC--C----HHHHHHHHHHHHHHHH
Confidence 356777777777653 2 8889999999987754
No 18
>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B*
Probab=45.21 E-value=42 Score=20.66 Aligned_cols=32 Identities=3% Similarity=0.127 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++.. + |.+..||...++.+..
T Consensus 108 ~~Ll~~l~~~lg~~~--t----~e~~~AW~k~~~~va~ 139 (146)
T 2aa1_B 108 DCLTIVVAARFGSAF--T----GEVQAAFQKFMAVVVS 139 (146)
T ss_dssp HHHHHHHHHHHGGGS--C----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccC--C----HHHHHHHHHHHHHHHH
Confidence 356777777777653 2 8889999999987753
No 19
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=45.13 E-value=42 Score=20.57 Aligned_cols=32 Identities=6% Similarity=0.151 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++.. + |.+..||...++.+..
T Consensus 108 ~~ll~~l~~~lg~~~--t----~e~~~AW~k~~~~va~ 139 (146)
T 3d1k_B 108 DCITIVLAAKMGHAF--T----AETQGAFQKFLAAVVS 139 (146)
T ss_dssp HHHHHHHHHHHGGGS--C----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC--C----HHHHHHHHHHHHHHHH
Confidence 356777777777653 2 8889999999987753
No 20
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=44.33 E-value=44 Score=20.59 Aligned_cols=32 Identities=9% Similarity=0.494 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...++.+..
T Consensus 98 ~~Ll~~l~~~lg~~--~t----~e~~~AW~k~~~~va~ 129 (136)
T 1gcv_B 98 DCIIVELAYLRKDC--FT----PHIQGIWDKFFEVVID 129 (136)
T ss_dssp HHHHHHHHHHHGGG--SC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccC--CC----HHHHHHHHHHHHHHHH
Confidence 35677777777765 33 8899999999987743
No 21
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=44.00 E-value=45 Score=20.52 Aligned_cols=32 Identities=13% Similarity=0.387 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++.. + |.+..||...++.+..
T Consensus 108 ~~Ll~~l~~~lg~~~--t----~e~~~AW~k~~~~va~ 139 (146)
T 1out_B 108 DVLTIVIAAKFGASF--T----PEIQATWQKFMKVVVA 139 (146)
T ss_dssp HHHHHHHHHHHGGGS--C----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccC--C----HHHHHHHHHHHHHHHH
Confidence 356777777777653 2 8889999999987754
No 22
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=43.68 E-value=29 Score=28.27 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHh
Q 043785 20 PPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCN 64 (68)
Q Consensus 20 PPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~~ 64 (68)
|..++..+-.+.+..+.+.+... -..||++|....++....+..
T Consensus 443 Psl~CVdlV~~eL~~iv~~~~~~-l~RfP~Lr~ei~~iv~~~Lre 486 (772)
T 3zvr_A 443 PSIKCVDMVVSELTSTIRKCSEK-LQQYPRLREEMERIVTTHIRE 486 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGG-GTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHH
Confidence 66778888888999999998764 566999999999998877643
No 23
>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_B*
Probab=42.83 E-value=46 Score=20.59 Aligned_cols=32 Identities=6% Similarity=0.125 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++.. + |.+..||...++.+..
T Consensus 103 ~~Ll~~l~~~lg~~~--t----~e~~~AW~k~~~~va~ 134 (141)
T 1cg5_B 103 QTFMVELALHYKKTF--R----PKEHAAAYKFFRLVAE 134 (141)
T ss_dssp HHHHHHHHHHHGGGC--C----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC--C----HHHHHHHHHHHHHHHH
Confidence 356777887777653 2 8899999999987743
No 24
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=42.49 E-value=48 Score=20.38 Aligned_cols=32 Identities=6% Similarity=0.144 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++.. =|.+..||...++.+..
T Consensus 119 ~~Ll~~l~~~lg~~~------t~e~~~AW~k~~~~va~ 150 (152)
T 4hrt_B 119 GPLRQTLKARMGNYF------DEDTVAAWASLVAVVQA 150 (152)
T ss_dssp HHHHHHHHHHHGGGC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC------CHHHHHHHHHHHHHHHH
Confidence 467888888887652 37889999999987653
No 25
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=42.46 E-value=38 Score=20.66 Aligned_cols=31 Identities=6% Similarity=0.255 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.+++. ++ |.+..||...++.+..
T Consensus 106 ~ll~~l~~~lg~~--~t----~e~~~AW~k~~~~va~ 136 (143)
T 1xq5_A 106 CILVLLAVKFPKD--FT----PEVHISYDKFFSALAR 136 (143)
T ss_dssp HHHHHHHHHCGGG--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc--CC----HHHHHHHHHHHHHHHH
Confidence 4667777766654 33 8889999999987753
No 26
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=42.33 E-value=32 Score=20.75 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...++.+..
T Consensus 104 ~~ll~~l~~~lg~~--~t----~e~~~AW~~~~~~v~~ 135 (142)
T 1jeb_A 104 HCLLVTLAARFPAD--FT----AEAHAAWDKFLSVVSS 135 (142)
T ss_dssp HHHHHHHHHHCTTT--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc--CC----HHHHHHHHHHHHHHHH
Confidence 35666777766644 32 7889999999987754
No 27
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=41.00 E-value=52 Score=20.22 Aligned_cols=33 Identities=6% Similarity=0.246 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. .++ |.+..||...++.+..
T Consensus 108 ~~Ll~~l~~~lg~~-~~t----~e~~~AW~k~~~~va~ 140 (147)
T 3bom_B 108 DCITVCVAAKLGPA-VFS----ADTQEAFQKFLAVVVS 140 (147)
T ss_dssp HHHHHHHHHHHHHH-HSC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-cCC----HHHHHHHHHHHHHHHH
Confidence 35677777777754 122 8889999999987753
No 28
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=40.85 E-value=34 Score=20.87 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...++.+..
T Consensus 103 ~~Ll~~l~~~lg~~--~t----~e~~~AW~~~~~~va~ 134 (141)
T 2r80_A 103 HCFLVVVAVHFPSL--LT----PEVHASLDKFVLAVGT 134 (141)
T ss_dssp HHHHHHHHHHCTTT--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc--CC----HHHHHHHHHHHHHHHH
Confidence 35666777666644 33 8899999999987753
No 29
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=40.66 E-value=42 Score=21.75 Aligned_cols=32 Identities=13% Similarity=0.455 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..|+++|++.+++. ++ |.+..||...++.+..
T Consensus 132 ~~Ll~~l~~~lg~~--~t----~e~~~AW~k~~~~va~ 163 (193)
T 2dc3_A 132 GVILEVVAEEFASD--FP----PETQRAWAKLRGLIYS 163 (193)
T ss_dssp HHHHHHHHHHTGGG--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc--CC----HHHHHHHHHHHHHHHH
Confidence 35667777777654 33 7889999999987743
No 30
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=39.52 E-value=37 Score=20.58 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.+++. ++ |.+..||...++.+..
T Consensus 105 ~ll~~l~~~lg~~--~t----~e~~~AW~~~~~~v~~ 135 (142)
T 3d1k_A 105 CILVVISTMFPKE--FT----PEAHVSLDKFLSGVAL 135 (142)
T ss_dssp HHHHHHHHHCTTT--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccc--CC----HHHHHHHHHHHHHHHH
Confidence 4566666666644 33 7889999999887753
No 31
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Probab=38.47 E-value=42 Score=20.36 Aligned_cols=31 Identities=23% Similarity=0.557 Sum_probs=21.4
Q ss_pred HHHHHHHHHHH-hhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLR-ESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~r-e~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.++ +. ++ |.+..||..+++.+..
T Consensus 121 ~Ll~~l~~~lg~~~--~t----~e~~~AW~~~~~~i~~ 152 (162)
T 2oif_A 121 ALLETIKEALPADM--WG----PEMRNAWGEAYDQLVA 152 (162)
T ss_dssp HHHHHHHHHSCGGG--CS----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccc--CC----HHHHHHHHHHHHHHHH
Confidence 45666666665 33 22 8889999999987743
No 32
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=38.33 E-value=39 Score=20.71 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.+++. ++ |.+..||...++.+..
T Consensus 106 ~Ll~~l~~~lg~~--~t----~e~~~AW~k~~~~va~ 136 (143)
T 1out_A 106 NILVTLAIHFPSD--FT----PEVHIAVDKFLAAVSA 136 (143)
T ss_dssp HHHHHHHHHCTTT--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccc--CC----HHHHHHHHHHHHHHHH
Confidence 4666676666654 22 8889999999987753
No 33
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=37.69 E-value=63 Score=19.85 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCIL 62 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~ 62 (68)
..++++|++.+++.. =|.+..||...++.+.
T Consensus 117 ~~Ll~~l~~~lg~~~------t~e~~~AW~k~~~~va 147 (150)
T 4hrt_A 117 EPMKETLKARMGNYY------SDDVAGAWAALVGVVQ 147 (150)
T ss_dssp HHHHHHHHHHHGGGC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC------CHHHHHHHHHHHHHHH
Confidence 467888888887653 3788999999988764
No 34
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=37.33 E-value=42 Score=20.44 Aligned_cols=31 Identities=10% Similarity=0.308 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.+++. ++ |.+..||...++.+..
T Consensus 106 ~Ll~~l~~~lg~~--~t----~e~~~AW~~~~~~va~ 136 (143)
T 3bom_A 106 NLIVVIAAYFPAE--FT----PEIHLSVDKFLQQLAL 136 (143)
T ss_dssp HHHHHHHHHCTTT--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccc--CC----HHHHHHHHHHHHHHHH
Confidence 4566666666644 33 7889999999987753
No 35
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=36.84 E-value=44 Score=20.50 Aligned_cols=31 Identities=13% Similarity=0.401 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.+++. ++ |.+..||...++.+..
T Consensus 107 ~Ll~~l~~~lg~~--~t----~e~~~AW~k~~~~va~ 137 (144)
T 1spg_A 107 NIILVISMYFPGD--FT----PEVHLSVDKFLACLAL 137 (144)
T ss_dssp HHHHHHHHHSTTT--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccC--CC----HHHHHHHHHHHHHHHH
Confidence 4566666666654 22 8889999999987753
No 36
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=36.37 E-value=44 Score=20.09 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.++ + -|.+..||...+..+..
T Consensus 110 ~ll~~l~~~lg----~----t~e~~~AW~~~~~~ia~ 138 (141)
T 1ith_A 110 LVGGVFQEEFS----A----DPTTVAAWGDAAGVLVA 138 (141)
T ss_dssp HHHHHHHHHSC----C----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----C----CHHHHHHHHHHHHHHHH
Confidence 34555555544 2 38999999999987653
No 37
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=36.27 E-value=54 Score=20.12 Aligned_cols=32 Identities=6% Similarity=0.089 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++ |.+..||...++.+..
T Consensus 109 ~~Ll~~l~~~lg~~--~t----~e~~~AW~k~~~~v~~ 140 (151)
T 1a6m_A 109 EAIIHVLHSRHPGD--FG----ADAQGAMNKALELFRK 140 (151)
T ss_dssp HHHHHHHHHHCGGG--CS----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc--CC----HHHHHHHHHHHHHHHH
Confidence 35667777766654 23 7889999999987743
No 38
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=36.20 E-value=42 Score=20.63 Aligned_cols=31 Identities=6% Similarity=0.186 Sum_probs=21.9
Q ss_pred HHHHHHHHHHH-hhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLR-ESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~r-e~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.++ +. | =|.+..||...++.+..
T Consensus 119 ~Ll~~l~~~lg~~~--~----t~e~~~AW~~~~~~va~ 150 (154)
T 4b4y_A 119 CILTQVVKRVSEAK--W----SEEKKEAWLKAYGIITV 150 (154)
T ss_dssp HHHHHHHHHSCTTT--C----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC--C----CHHHHHHHHHHHHHHHH
Confidence 45666666665 43 2 28899999999987754
No 39
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=35.62 E-value=52 Score=19.49 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++ +++. .=|.+..||...+..+..
T Consensus 97 ~Ll~~l~~-lg~~------~t~e~~~AW~~~~~~~a~ 126 (134)
T 1tu9_A 97 ALLMAVAE-HDRD------CDAETRDAWRDVMGRGIA 126 (134)
T ss_dssp HHHHHHHH-HCTT------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hccc------CCHHHHHHHHHHHHHHHH
Confidence 45555555 5442 238899999999987753
No 40
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=32.83 E-value=45 Score=20.23 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.++ + =|.+..||...++.+..
T Consensus 114 ~ll~~l~~~lg----~----t~e~~~AW~~~~~~va~ 142 (152)
T 3pt8_B 114 TLLRYLEDHCH----V----EGSTKNAWEDFIAYICR 142 (152)
T ss_dssp HHHHHHHHTTS----C----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----C----CHHHHHHHHHHHHHHHH
Confidence 44555555443 3 38899999999887754
No 41
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=32.58 E-value=56 Score=20.09 Aligned_cols=31 Identities=6% Similarity=0.182 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.+++. ++ |.+..||...++.+..
T Consensus 110 ~Ll~~l~~~lg~~--~t----~e~~~AW~k~~~~va~ 140 (153)
T 1lhs_A 110 IIVKVIAEKHPSD--FG----ADSQAAMKKALELFRN 140 (153)
T ss_dssp HHHHHHHHHCTTT--SC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccc--CC----HHHHHHHHHHHHHHHH
Confidence 4566666666644 23 8889999999887743
No 42
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=30.37 E-value=73 Score=19.35 Aligned_cols=29 Identities=7% Similarity=0.313 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.++ + =|.+..||...++.+..
T Consensus 112 ~Ll~~l~~~lg----~----t~e~~~AW~~~~~~v~~ 140 (153)
T 2bk9_A 112 VILDVLTAASS----L----DESQAATWAKLVDHVYA 140 (153)
T ss_dssp HHHHHHHHHTT----C----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----C----CHHHHHHHHHHHHHHHH
Confidence 34555555543 3 38899999999987754
No 43
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=28.10 E-value=77 Score=19.10 Aligned_cols=30 Identities=10% Similarity=0.332 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.++ . ++ |.+..||...++.+..
T Consensus 115 ~Ll~~l~~~lg-~--~t----~e~~~AW~~~~~~i~~ 144 (150)
T 1x46_A 115 ALEAFLESHAS-G--YN----AGTKKAWDSAFNNMYS 144 (150)
T ss_dssp HHHHHHHHHST-T--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-c--CC----HHHHHHHHHHHHHHHH
Confidence 45555655554 2 22 7889999999987754
No 44
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=27.96 E-value=65 Score=21.82 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
+.++++|++.+++.. + |.+..||...++.+..
T Consensus 103 ~~Ll~~l~~~lg~~~--t----~e~~~AW~~~~~~ia~ 134 (283)
T 1c7c_A 103 HCLLVTLAAHLPAEF--T----PAVHASLDKFLASVST 134 (283)
T ss_dssp HHHHHHHHHHCTTTC--C----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC--C----HHHHHHHHHHHHHHHH
Confidence 356777777777552 2 8889999999887643
No 45
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=26.37 E-value=80 Score=19.26 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 043785 48 PRARFVWSRVLDCILC 63 (68)
Q Consensus 48 pr~R~a~sRil~~~~~ 63 (68)
|.+..||...++.+..
T Consensus 126 ~e~~~AW~k~~~~va~ 141 (151)
T 2c0k_A 126 EKQVHAYHKFFDRAYD 141 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7889999999987753
No 46
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=26.16 E-value=1e+02 Score=18.37 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++. .||...++.+..
T Consensus 109 ~~Ll~~l~~~lg~~--~t~-------~AW~~~~~~ia~ 137 (140)
T 1x9f_D 109 KHLLHVLGDRLGTH--FDF-------GAWHDCVDQIID 137 (140)
T ss_dssp HHHHHHHHHHHGGG--CCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc--CCH-------HHHHHHHHHHHH
Confidence 35677777777754 332 899988887653
No 47
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=23.91 E-value=91 Score=18.80 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 26 NLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 26 ~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
..++++|++.+++. ++. .||...+..+..
T Consensus 111 ~~Ll~~l~~~lg~~--~t~-------~AW~~~~~~ia~ 139 (145)
T 1x9f_B 111 TAILHVVAAQLGRC--YDR-------EAWDACIDHIED 139 (145)
T ss_dssp HHHHHHHHHHHTTS--CCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CCH-------HHHHHHHHHHHH
Confidence 35677777777754 332 799988887653
No 48
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=22.47 E-value=21 Score=21.18 Aligned_cols=11 Identities=18% Similarity=0.153 Sum_probs=8.5
Q ss_pred ccceeccCCch
Q 043785 13 VPLTLYIPPLR 23 (68)
Q Consensus 13 ~PLTLYvPPiR 23 (68)
.++++.+||.|
T Consensus 135 ~~~~i~lPpLR 145 (145)
T 3n70_A 135 AMTQIACLPLT 145 (145)
T ss_dssp HHHEEECCCCC
T ss_pred cCCEEeCCCCC
Confidence 34678999987
No 49
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=22.27 E-value=99 Score=18.73 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 27 LFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 27 lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
.++++|++.++ . ++ |.+..||...++.+..
T Consensus 105 ~ll~~l~~~lg-~--~t----~e~~~AW~k~~~~va~ 134 (141)
T 1cg5_A 105 CIVVTLAVNLQ-A--FT----PVTHCAVDKFLELVAY 134 (141)
T ss_dssp HHHHHHHHHSS-C--CC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-c--CC----HHHHHHHHHHHHHHHH
Confidence 45555555554 2 22 7889999999887754
No 50
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=21.27 E-value=1.2e+02 Score=21.62 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=36.1
Q ss_pred cCCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785 19 IPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC 63 (68)
Q Consensus 19 vPPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~ 63 (68)
=|.+..++.-.|.++..+.+...-....||.++.+..-+...++.
T Consensus 102 ePAl~cl~~V~e~l~~~~~~i~~~~F~rFpnL~~~i~~~i~~i~~ 146 (271)
T 3ljb_A 102 EPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRA 146 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 366777888888889999998888999999998887776666543
No 51
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=20.93 E-value=54 Score=22.83 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=29.2
Q ss_pred cccceeccCC---chhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 043785 12 AVPLTLYIPP---LRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLD 59 (68)
Q Consensus 12 A~PLTLYvPP---iRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~ 59 (68)
.|+-.+|||| +=..+-..+++..++++. ..+....=+++.||.+.+.
T Consensus 130 GV~~~~~i~~ry~ia~i~~i~~~i~~~l~~~-~~~~~~~~~~~~A~~K~~~ 179 (195)
T 2veb_A 130 NVESVPNIGYRYLVAFIYPITATMKPFLARK-GHTPEEVEKMYQAWFKATT 179 (195)
T ss_dssp TCCCCSCCCHHHHHHTHHHHHHTTHHHHTSS-SCCHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCchHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 3566778887 333444566666666653 3344455567889988765
Done!