BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043786
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V60|A Chain A, Solution Structure Of Bola1 Protein From Mus Musculus
Length = 123
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 5/83 (6%)
Query: 81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
IR KLE+ L P VLE+ + S HA AG ETHF V +VS FEG S ++RHRL++
Sbjct: 31 IRAKLEQALSPEVLELRNESGGHAVPAG-----SETHFRVAVVSSRFEGMSPLQRHRLVH 85
Query: 141 DLLQEELQNGLHALSIVARTPSE 163
+ L EEL +HAL+I A+TP++
Sbjct: 86 EALSEELAGPVHALAIQAKTPAQ 108
>pdb|2DHM|A Chain A, Solution Structure Of The Bola Protein From Escherichia
Coli
Length = 107
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 9/86 (10%)
Query: 79 MRIRDKLEKELR----PVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVK 134
M IR+++E++LR PV LEV D SY+H AG E+HF V +VS F G+ +
Sbjct: 8 MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG-----SESHFKVVLVSDRFTGERFLN 62
Query: 135 RHRLIYDLLQEELQNGLHALSIVART 160
RHR+IY L EEL +HAL++ T
Sbjct: 63 RHRMIYSTLAEELSTTVHALALHTYT 88
>pdb|2KDN|A Chain A, Solution Structure Of Pfe0790c, A Putative Bola-Like
Protein From The Protozoan Parasite Plasmodium
Falciparum
Length = 108
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
I DKL L+P LE+ D + T F+ IVS FE K L+ RHRL+
Sbjct: 29 IEDKLSSALKPTFLELVD-----------KSCGCGTSFDAVIVSNNFEDKKLLDRHRLVN 77
Query: 141 DLLQEELQNGLHALSIVARTPSE 163
+L+EELQN +HA S+ TP E
Sbjct: 78 TILKEELQN-IHAFSMKCHTPLE 99
>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus
Musculus
Length = 113
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
+R+KL ++L +EVED + T F V +VS +FEGK L++RHRL+
Sbjct: 35 LREKLRQDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQRHRLVN 84
Query: 141 DLLQEELQNGLHALSIVARTPSE 163
+ L EEL + +HA TP +
Sbjct: 85 ECLAEELPH-IHAFEQKTLTPEQ 106
>pdb|1XS3|A Chain A, Solution Structure Analysis Of The Xc975 Protein
Length = 80
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 109 VRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
V+G DG HF +VS F GK+ + RHR++Y L E + +HAL + TP E
Sbjct: 26 VQGEDG-VHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDE 79
>pdb|3TR3|A Chain A, Structure Of A Bola Protein Homologue From Coxiella
Burnetii
pdb|3TR3|B Chain B, Structure Of A Bola Protein Homologue From Coxiella
Burnetii
Length = 82
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 113 DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
DG HF ++ FEG++ + RHRL+Y+ L Q+ +HALS+ TP E
Sbjct: 29 DGH-HFEAVVLCPTFEGQTALTRHRLVYNALGSHXQSDIHALSLKTYTPDE 78
>pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia Bovis
Length = 105
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
+ ++L L P L+V D ++G G FN IVS++FEGK L+ R RL+
Sbjct: 28 VEERLRSMLSPQFLKVTD----NSGGCGA-------AFNAYIVSQQFEGKGLLDRQRLVN 76
Query: 141 DLLQEELQNGLHALSIVARTPSE 163
+ E+ +HA ++ TP E
Sbjct: 77 SAIAAEMPQ-IHAFTMKCLTPGE 98
>pdb|1NY8|A Chain A, Solution Structure Of Protein Yrba From Escherichia Coli:
Northeast Structural Genomics Consortium Target Er115
Length = 97
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 113 DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEEL-QNGLHALSIVARTPSE 163
DG +HF V V + F+G S VK+ + +Y L E + N +HA+SI A TP+E
Sbjct: 29 DG-SHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAE 79
>pdb|2KZ0|A Chain A, Solution Structure Of A Bola Protein (Ech_0303) From
Ehrlichia Chaffeensis. Seattle Structural Genomics
Center For Infectious Disease Target Ehcha.10365.A
Length = 76
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 31/42 (73%), Gaps = 7/42 (16%)
Query: 117 HFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGL--HALSI 156
H+++K++S +F+GKS +++HR+IY +L +GL HA+ I
Sbjct: 35 HYSIKVISSQFQGKSKLEQHRMIYKVL-----DGLNIHAIQI 71
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 117 HFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPS 162
+FN + + F G+ + K HR + +Q L+NG S++ P+
Sbjct: 174 YFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPA 219
>pdb|1TJ2|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With Acetate
Length = 584
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 99 ISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRH-RLIYDLLQEELQNGLHALSIV 157
+SYQ A HA + S+G + +S + +L R+ R YD + EEL L +L+++
Sbjct: 217 VSYQQAIHAIGKASNGRGIYEGPGISIKLS--ALHPRYSRAQYDRVMEELYPRLKSLTLL 274
Query: 158 AR 159
AR
Sbjct: 275 AR 276
>pdb|1K87|A Chain A, Crystal Structure Of E.coli Puta (residues 1-669)
Length = 669
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 99 ISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRH-RLIYDLLQEELQNGLHALSIV 157
+SYQ A HA + S+G + +S + +L R+ R YD + EEL L +L+++
Sbjct: 302 VSYQQAIHAIGKASNGRGIYEGPGISIKLS--ALHPRYSRAQYDRVMEELYPRLKSLTLL 359
Query: 158 AR 159
AR
Sbjct: 360 AR 361
>pdb|1TIW|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With
L-Tetrahydro-2-Furoic Acid
pdb|1TJ0|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Co-Crystallized With L-Lactate
pdb|1TJ1|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With L-Lactate
pdb|2FZN|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With Proline
pdb|2FZM|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With So2
Length = 602
Score = 27.3 bits (59), Expect = 4.0, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 99 ISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRH-RLIYDLLQEELQNGLHALSIV 157
+SYQ A HA + S+G + +S + +L R+ R YD + EEL L +L+++
Sbjct: 217 VSYQQAIHAIGKASNGRGIYEGPGISIKLS--ALHPRYSRAQYDRVMEELYPRLKSLTLL 274
Query: 158 AR 159
AR
Sbjct: 275 AR 276
>pdb|3E2Q|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With Trans-4-Hydroxy-L-Proline
pdb|3E2R|A Chain A, Crystal Structure Puta86-630 Mutant Y540s Complexed With
L-Tetrahydro- 2-Furoic Acid
pdb|3E2S|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With L- Proline
Length = 551
Score = 27.3 bits (59), Expect = 4.2, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 99 ISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRH-RLIYDLLQEELQNGLHALSIV 157
+SYQ A HA + S+G + +S + +L R+ R YD + EEL L +L+++
Sbjct: 217 VSYQQAIHAIGKASNGRGIYEGPGISIKLS--ALHPRYSRAQYDRVMEELYPRLKSLTLL 274
Query: 158 AR 159
AR
Sbjct: 275 AR 276
>pdb|3ITG|A Chain A, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
pdb|3ITG|B Chain B, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
Length = 602
Score = 26.9 bits (58), Expect = 5.8, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 99 ISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRH-RLIYDLLQEELQNGLHALSIV 157
+SYQ A HA + S+G + +S +L R+ R YD + EEL L +L+++
Sbjct: 217 VSYQQAIHAIGKASNGRGIYEGPGISIXLS--ALHPRYSRAQYDRVMEELYPRLKSLTLL 274
Query: 158 AR 159
AR
Sbjct: 275 AR 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.130 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,170,971
Number of Sequences: 62578
Number of extensions: 145151
Number of successful extensions: 361
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 23
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.7 bits)