Query 043786
Match_columns 164
No_of_seqs 111 out of 1086
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11628 transcriptional regul 100.0 7.6E-32 1.6E-36 203.6 8.4 85 75-164 1-85 (105)
2 PF01722 BolA: BolA-like prote 100.0 1E-31 2.2E-36 192.0 7.2 76 84-164 1-76 (76)
3 COG0271 BolA Stress-induced mo 100.0 6.1E-31 1.3E-35 194.5 9.8 82 79-164 6-87 (90)
4 KOG2313 Stress-induced protein 100.0 7.5E-30 1.6E-34 191.6 11.0 95 70-164 4-100 (100)
5 KOG3348 BolA (bacterial stress 99.9 1.8E-25 4E-30 163.9 7.7 78 75-164 2-79 (85)
6 COG5007 Predicted transcriptio 99.9 5.9E-24 1.3E-28 154.4 7.2 72 78-164 3-75 (80)
7 smart00542 FYRC "FY-rich" doma 30.7 87 0.0019 22.5 3.8 33 117-149 1-36 (86)
8 TIGR02174 CXXU_selWTH selT/sel 29.8 1.6E+02 0.0036 20.2 4.9 26 74-99 11-36 (72)
9 TIGR03435 Soli_TIGR03435 Solib 26.6 1.3E+02 0.0029 25.9 4.8 66 74-152 30-95 (237)
10 PF06183 DinI: DinI-like famil 26.0 99 0.0021 21.5 3.2 50 77-148 9-58 (65)
11 PF10330 Stb3: Putative Sin3 b 25.7 72 0.0016 24.2 2.7 21 124-144 34-54 (92)
12 PRK00447 hypothetical protein; 25.7 1.3E+02 0.0027 24.0 4.2 21 78-98 17-37 (144)
13 PF12685 SpoIIIAH: SpoIIIAH-li 23.7 1.1E+02 0.0023 25.0 3.5 50 75-141 134-184 (196)
14 PF01877 RNA_binding: RNA bind 22.0 3.3E+02 0.0072 20.6 5.8 23 78-100 15-38 (120)
No 1
>PRK11628 transcriptional regulator BolA; Provisional
Probab=99.97 E-value=7.6e-32 Score=203.55 Aligned_cols=85 Identities=42% Similarity=0.636 Sum_probs=80.3
Q ss_pred CcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceE
Q 043786 75 GSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHAL 154 (164)
Q Consensus 75 ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHAL 154 (164)
|...++|+++|+.+|+|.+|+|+|+|++|+||.| + ++||+|+|||+.|+||++|+||||||++|+++|..+||||
T Consensus 1 mm~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g----~-~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IHAL 75 (105)
T PRK11628 1 MMIREQIEEKLRAAFQPVFLEVVDESYRHNVPAG----S-ESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL 75 (105)
T ss_pred CCcHHHHHHHHHhhCCCcEEEEEECcccccCCCC----C-CceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCccce
Confidence 5678999999999999999999999999999874 3 4899999999999999999999999999999999779999
Q ss_pred EeeeeCCCCC
Q 043786 155 SIVARTPSEV 164 (164)
Q Consensus 155 SIkT~TP~E~ 164 (164)
+|+||||+||
T Consensus 76 si~t~tp~Ew 85 (105)
T PRK11628 76 ALHTYTIKEW 85 (105)
T ss_pred eeecCCHHHH
Confidence 9999999998
No 2
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=99.97 E-value=1e-31 Score=192.01 Aligned_cols=76 Identities=59% Similarity=0.927 Sum_probs=68.6
Q ss_pred HHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceEEeeeeCCCC
Q 043786 84 KLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163 (164)
Q Consensus 84 kL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHALSIkT~TP~E 163 (164)
||+++|+|+.|+|+|+|++|+||++ |++||+|+|||+.|+|||+|+||||||++|+++|+++||||+|+|+||+|
T Consensus 1 Kl~~~l~~~~l~V~d~S~~H~~h~~-----g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~~iHAlsi~t~tp~E 75 (76)
T PF01722_consen 1 KLKAALPPTHLEVEDESHKHAGHAG-----GGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKDGIHALSIKTYTPEE 75 (76)
T ss_dssp HHHHHHTTSEEEEEE-SSSSSS-CC-----SSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGCTCSEEEEEEE-HHH
T ss_pred ChhHhCCCcEEEEEECcccccCCCC-----CCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCCccc
Confidence 6889999999999999999999993 25999999999999999999999999999999999889999999999999
Q ss_pred C
Q 043786 164 V 164 (164)
Q Consensus 164 ~ 164 (164)
|
T Consensus 76 w 76 (76)
T PF01722_consen 76 W 76 (76)
T ss_dssp H
T ss_pred C
Confidence 8
No 3
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=99.97 E-value=6.1e-31 Score=194.51 Aligned_cols=82 Identities=50% Similarity=0.796 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceEEeee
Q 043786 79 MRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVA 158 (164)
Q Consensus 79 ~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHALSIkT 158 (164)
.+|+++|+++|+|.+++|+|+|+.|++|++ || ++||+|+|||+.|+|||+|+|||+||++|+|+|..+||||+|+|
T Consensus 6 ~~Ie~~l~~~f~p~~l~i~deS~~h~~~~~---g~-~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iHALal~t 81 (90)
T COG0271 6 ERIEKKLRAAFPPSFLEIIDESHRHHGHAG---GG-GSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIHALALHT 81 (90)
T ss_pred HHHHHHHHhcCCCceEEEEecccccccCCC---CC-CCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccceeeEeEe
Confidence 599999999999999999999999999997 34 49999999999999999999999999999999997899999999
Q ss_pred eCCCCC
Q 043786 159 RTPSEV 164 (164)
Q Consensus 159 ~TP~E~ 164 (164)
+||.||
T Consensus 82 ~t~~e~ 87 (90)
T COG0271 82 YTPEEW 87 (90)
T ss_pred eccchh
Confidence 999987
No 4
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=99.96 E-value=7.5e-30 Score=191.58 Aligned_cols=95 Identities=59% Similarity=0.853 Sum_probs=89.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCC-CCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHc
Q 043786 70 NSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGS-DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQ 148 (164)
Q Consensus 70 ~~~~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g-~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~ 148 (164)
+....++++.+|+++|..+|.|..++++|+|+.|+||+..+|. ++|+||+|.|||++|+|||+|+||||||++|++|+.
T Consensus 4 ~~~~~g~~~~ri~~~l~~~lkp~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~ 83 (100)
T KOG2313|consen 4 PSGIYGPRESRIREKLFEALKPLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELA 83 (100)
T ss_pred cccccCcHHHHHHHHhHhhcCcceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHHhh
Confidence 4456789999999999999999999999999999999988753 458999999999999999999999999999999999
Q ss_pred C-CcceEEeeeeCCCCC
Q 043786 149 N-GLHALSIVARTPSEV 164 (164)
Q Consensus 149 ~-~IHALSIkT~TP~E~ 164 (164)
. ++|||+|.++||.||
T Consensus 84 ~~gvHAL~i~aKTP~e~ 100 (100)
T KOG2313|consen 84 GTGVHALSIMAKTPSEV 100 (100)
T ss_pred ccceeEEEeeccCCCCC
Confidence 8 799999999999998
No 5
>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.8e-25 Score=163.86 Aligned_cols=78 Identities=44% Similarity=0.655 Sum_probs=74.1
Q ss_pred CcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceE
Q 043786 75 GSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHAL 154 (164)
Q Consensus 75 ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHAL 154 (164)
++.+++|+++|+++|.|..|+|+|+|+ ||| +.|+|.|||+.|+||++|+|||+||++|+++|+ .||||
T Consensus 2 ~~~e~~l~~~L~~~l~p~~v~V~D~Sg----------GCG-~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik-~iHal 69 (85)
T KOG3348|consen 2 TVTEERLEELLTEALEPEHVEVQDVSG----------GCG-SMFDVVIVSAAFEGKSLLARHRLVNSILAEEIK-EIHAL 69 (85)
T ss_pred cchHHHHHHHHHhhcCceEEEEEEcCC----------Ccc-ceEEEEEEccccCChHHHHHHHHHHHHHHHHHH-HHhhh
Confidence 456899999999999999999999995 687 999999999999999999999999999999999 59999
Q ss_pred EeeeeCCCCC
Q 043786 155 SIVARTPSEV 164 (164)
Q Consensus 155 SIkT~TP~E~ 164 (164)
+++||||++|
T Consensus 70 t~kt~t~~~w 79 (85)
T KOG3348|consen 70 TIKTYTPEEW 79 (85)
T ss_pred eeeecChhhh
Confidence 9999999998
No 6
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=99.90 E-value=5.9e-24 Score=154.37 Aligned_cols=72 Identities=46% Similarity=0.636 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcC-CcceEEe
Q 043786 78 GMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQN-GLHALSI 156 (164)
Q Consensus 78 ~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~-~IHALSI 156 (164)
.++|++.|+++||.++++|+. +| +||.+++||+.|+|||+|+|||+||+.|.++|.+ .||||||
T Consensus 3 ~e~Ik~ll~~~L~~e~v~V~G--------------dg-~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAlsi 67 (80)
T COG5007 3 NEEIKSLLENALPLEEVEVEG--------------DG-SHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSI 67 (80)
T ss_pred HHHHHHHHHhcCCccEEEEec--------------CC-ceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceEEEEe
Confidence 478999999999999999985 34 8999999999999999999999999999999994 8999999
Q ss_pred eeeCCCCC
Q 043786 157 VARTPSEV 164 (164)
Q Consensus 157 kT~TP~E~ 164 (164)
+||||+||
T Consensus 68 kt~Tp~eW 75 (80)
T COG5007 68 KTYTPAEW 75 (80)
T ss_pred eecCHHHh
Confidence 99999998
No 7
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=30.66 E-value=87 Score=22.48 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=27.8
Q ss_pred eEEEEEec---cccCCCCHHHHHHHHHHHHHHHHcC
Q 043786 117 HFNVKIVS---KEFEGKSLVKRHRLIYDLLQEELQN 149 (164)
Q Consensus 117 HF~I~IVS---~~F~GkS~VkRHRlVy~~Lkdei~~ 149 (164)
+|+|++.+ ..|.|-|.=+-|++|++.+++....
T Consensus 1 lF~v~~~~~~~~~~~~~S~~~~W~~vl~~v~~~r~~ 36 (86)
T smart00542 1 LFRVEIESDPDEVFKGESPEKCWEMVLERVQEARIV 36 (86)
T ss_pred CeEEEEecCCCCeEEeCCHHHHHHHHHHHHHHHHHH
Confidence 47777776 4689999999999999999988763
No 8
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=29.75 E-value=1.6e+02 Score=20.23 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHhcCCCceEEEEec
Q 043786 74 LGSRGMRIRDKLEKELRPVVLEVEDI 99 (164)
Q Consensus 74 ~ms~~~~IkekL~~af~p~~leV~D~ 99 (164)
.++++..+.+.|.+.||...+.+...
T Consensus 11 y~~Ra~~l~q~L~~~Fp~~~v~~~~~ 36 (72)
T TIGR02174 11 YKPRAAWLKQELLEEFPDLEIEGENT 36 (72)
T ss_pred ChHHHHHHHHHHHHHCCCCeeEEeee
Confidence 57889999999999999887777663
No 9
>TIGR03435 Soli_TIGR03435 Solibacter paralogous family TIGR03435. This model describes a paralogous family of about 40 proteins found in Solibacter usitatus Ellin6076, one of the first three members of the Acidobacteria to be sequenced, and nowhere else. The family is well-diversified, with few pairs showing greater than 50 % pairwise identity. Two members of the family are longer, multidomain proteins with (two different) fused peptidase domains.
Probab=26.55 E-value=1.3e+02 Score=25.93 Aligned_cols=66 Identities=15% Similarity=0.263 Sum_probs=46.9
Q ss_pred CCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcc
Q 043786 74 LGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLH 152 (164)
Q Consensus 74 ~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IH 152 (164)
+.-.--.++.+|..++.-....|..-.+. ...+|.|....+ .|.++=+.-.|.-.+|++-|+-.+|
T Consensus 30 ~~~~~~tL~~lI~~AY~v~~~qv~GP~Wl-----------~serfDi~Ak~p--~g~~~~q~~~MLQ~LLaeRF~L~~H 95 (237)
T TIGR03435 30 LTITNVTLRDLIQAAYGVKPYQVSGPDWL-----------DSERFDIVAKAP--AGATREQVRLMLQTLLAERFKLAVH 95 (237)
T ss_pred EEEcCCCHHHHHHHHhCCCHHheeCCCcC-----------CccceeEEEeCC--CCCCHHHHHHHHHHHHHHhhCeEEe
Confidence 33344567888888887665556543321 236899998888 6777778888999999999985555
No 10
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=25.98 E-value=99 Score=21.52 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHc
Q 043786 77 RGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQ 148 (164)
Q Consensus 77 ~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~ 148 (164)
+..+|.++|...||+..|.|..-|. +.+.|.=. + . +-+..|..+|++.+.
T Consensus 9 L~~EL~kRl~~~yPd~~v~Vr~~s~--------------~~l~v~g~------~-~-~~k~~i~~iLqe~we 58 (65)
T PF06183_consen 9 LESELTKRLHRQYPDAEVRVRPGSA--------------NGLSVSGG------K-K-DDKERIEEILQEMWE 58 (65)
T ss_dssp HHHHHHHHHHHH-SS-EEEEEEESS---------------EEEEES---------H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCceEeeeeccc--------------CccccCCc------C-c-hHHHHHHHHHHHHHh
Confidence 5789999999999999999987541 34444311 1 1 126777777777664
No 11
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=25.73 E-value=72 Score=24.20 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.6
Q ss_pred ccccCCCCHHHHHHHHHHHHH
Q 043786 124 SKEFEGKSLVKRHRLIYDLLQ 144 (164)
Q Consensus 124 S~~F~GkS~VkRHRlVy~~Lk 144 (164)
-|.|.+.+.=|+-|+|..+|.
T Consensus 34 vPgF~~ls~sKqRRLi~~ALE 54 (92)
T PF10330_consen 34 VPGFSDLSPSKQRRLIMAALE 54 (92)
T ss_pred CCCcccCCHHHHHHHHHHHHh
Confidence 478999999999999999997
No 12
>PRK00447 hypothetical protein; Provisional
Probab=25.66 E-value=1.3e+02 Score=24.05 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCCceEEEEe
Q 043786 78 GMRIRDKLEKELRPVVLEVED 98 (164)
Q Consensus 78 ~~~IkekL~~af~p~~leV~D 98 (164)
.+++.++|.+-||...+++.+
T Consensus 17 ~eKV~~Ai~Nifp~~~ie~~~ 37 (144)
T PRK00447 17 EEKVKKAILNFFDFEKFEAED 37 (144)
T ss_pred HHHHHHHHHhhCCcceEEEEe
Confidence 578899999999999888754
No 13
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=23.69 E-value=1.1e+02 Score=24.97 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHhc-CCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHH
Q 043786 75 GSRGMRIRDKLEKE-LRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYD 141 (164)
Q Consensus 75 ms~~~~IkekL~~a-f~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~ 141 (164)
+..+..|+.+|+++ |+++-+.+.| ..+.|+|-++.+...-..+-..+|.+
T Consensus 134 ~~kE~~iE~llkakGf~davv~~~~-----------------~~v~VvV~~~~L~~~~~~~I~diV~~ 184 (196)
T PF12685_consen 134 MEKEMEIENLLKAKGFEDAVVFIED-----------------DSVDVVVKADKLSDAEAAQIIDIVMR 184 (196)
T ss_dssp HHHHHHHHHHHHTTS-SEEEEE-SS-----------------SEEEEEEE-S---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCceEEEeeC-----------------CEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44567888999988 9998888865 47999999998444333433333333
No 14
>PF01877 RNA_binding: RNA binding; InterPro: IPR002739 The proteins in this entry are functionally uncharacterised.; PDB: 2WNY_B 2NWU_A 2NRQ_A 2OGK_A 3D7A_B 3C9G_B 2PZZ_D.
Probab=21.99 E-value=3.3e+02 Score=20.58 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcC-CCceEEEEecC
Q 043786 78 GMRIRDKLEKEL-RPVVLEVEDIS 100 (164)
Q Consensus 78 ~~~IkekL~~af-~p~~leV~D~S 100 (164)
.+++.++|..-| |...++++...
T Consensus 15 ~eKV~~Al~nlf~~~~~~~~~~~~ 38 (120)
T PF01877_consen 15 EEKVKKALSNLFPPDAEIEIEEEE 38 (120)
T ss_dssp HHHHHHHHHHHSCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCceEEEEec
Confidence 678999999999 67788888754
Done!