Query 043786
Match_columns 164
No_of_seqs 111 out of 1086
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 14:13:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dhm_A Protein BOLA; stationar 100.0 1.2E-33 4.2E-38 212.8 7.8 87 73-164 6-92 (107)
2 1v60_A BOLA1, riken cDNA 18100 100.0 3.9E-32 1.3E-36 209.3 14.5 89 71-164 21-109 (123)
3 2kdn_A Putative uncharacterize 100.0 3.3E-29 1.1E-33 189.5 9.5 81 72-164 20-100 (108)
4 3o2e_A BOLA-like protein; ssgc 100.0 9.9E-30 3.4E-34 191.5 5.9 80 73-164 20-99 (105)
5 3tr3_A BOLA; cellular processe 100.0 8E-29 2.7E-33 178.8 6.0 78 73-164 2-79 (82)
6 1xs3_A Hypothetical protein XC 99.9 2.3E-28 7.9E-33 175.4 7.3 76 75-164 5-80 (80)
7 1v9j_A BOLA-like protein riken 99.9 1.6E-28 5.4E-33 186.9 5.4 78 76-164 30-107 (113)
8 2kz0_A BOLA family protein; BO 99.9 4.4E-27 1.5E-31 167.6 5.6 70 77-161 7-76 (76)
9 1ny8_A Protein YRBA; structure 99.9 9E-27 3.1E-31 173.0 4.5 73 77-164 7-80 (97)
10 1ylq_A Putative nucleotidyltra 55.3 31 0.0011 23.5 5.8 75 77-164 3-79 (96)
11 1xhj_A Nitrogen fixation prote 37.2 18 0.0006 25.7 2.1 19 73-91 54-72 (88)
12 2ljk_A Protein C17ORF37; MIEN1 24.7 1.4E+02 0.0047 22.1 5.3 36 73-122 36-71 (117)
13 3d7a_A UPF0201 protein PH1010; 23.0 1.6E+02 0.0053 22.0 5.3 21 78-98 20-40 (138)
14 2a5j_A RAS-related protein RAB 22.2 55 0.0019 23.4 2.6 34 101-134 5-38 (191)
15 2lvu_A Zinc finger and BTB dom 27.7 19 0.00064 17.3 0.0 22 119-140 4-25 (26)
16 3r8n_K 30S ribosomal protein S 21.0 1.8E+02 0.0063 21.2 5.3 65 85-162 11-78 (117)
17 2m0e_A Zinc finger and BTB dom 20.2 28 0.00096 16.5 0.4 18 123-140 8-25 (29)
No 1
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}
Probab=100.00 E-value=1.2e-33 Score=212.84 Aligned_cols=87 Identities=43% Similarity=0.619 Sum_probs=82.3
Q ss_pred CCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcc
Q 043786 73 GLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLH 152 (164)
Q Consensus 73 ~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IH 152 (164)
..|+++++|+++|+++|+|..|+|+|+|++|+||.| | ++||+|+|||+.|+||++|+||||||++|+++|+.+||
T Consensus 6 ~~m~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~G----~-gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IH 80 (107)
T 2dhm_A 6 SGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG----S-ESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVH 80 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCC----S-CCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEECcccccCCCC----C-CceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 447899999999999999999999999999999974 4 49999999999999999999999999999999997899
Q ss_pred eEEeeeeCCCCC
Q 043786 153 ALSIVARTPSEV 164 (164)
Q Consensus 153 ALSIkT~TP~E~ 164 (164)
||+|+||||+||
T Consensus 81 ALsi~t~TP~Ew 92 (107)
T 2dhm_A 81 ALALHTYTIKEW 92 (107)
T ss_dssp CCEEEEECHHHH
T ss_pred eEEEEecCHHHH
Confidence 999999999998
No 2
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.98 E-value=3.9e-32 Score=209.26 Aligned_cols=89 Identities=48% Similarity=0.667 Sum_probs=83.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCC
Q 043786 71 SGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNG 150 (164)
Q Consensus 71 ~~~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~ 150 (164)
....++++++|+++|+++|+|.+|+|+|+|++|+||.| | ++||+|+|||+.|+||++|+||||||++|+++|+.+
T Consensus 21 ~~~~~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~G----~-gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~~~ 95 (123)
T 1v60_A 21 SAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAG----S-ETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGP 95 (123)
T ss_dssp CSSSCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTT----C-CSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTT
T ss_pred CCCCCcHHHHHHHHHHhhCCCeEEEEEECcccccCCCC----C-CCeEEEEEEehhhCCCCHHHHHHHHHHHHHHHHcCC
Confidence 34457899999999999999999999999999999974 4 499999999999999999999999999999999977
Q ss_pred cceEEeeeeCCCCC
Q 043786 151 LHALSIVARTPSEV 164 (164)
Q Consensus 151 IHALSIkT~TP~E~ 164 (164)
||||+|+||||+||
T Consensus 96 IHALsi~t~TP~Ew 109 (123)
T 1v60_A 96 VHALAIQAKTPAQW 109 (123)
T ss_dssp CSEEEEEEECTTTT
T ss_pred cceeEeEecCHHHH
Confidence 99999999999999
No 3
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}
Probab=99.96 E-value=3.3e-29 Score=189.48 Aligned_cols=81 Identities=46% Similarity=0.644 Sum_probs=75.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCc
Q 043786 72 GGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGL 151 (164)
Q Consensus 72 ~~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~I 151 (164)
...|.++++|+++|+++|+|+.|+|+|+|+ ||+ +||+|+|||+.|+||++|+||||||++|+++|+. |
T Consensus 20 ~~~Mm~~~~I~~~L~~~l~p~~l~V~DeS~----------G~g-sHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~-I 87 (108)
T 2kdn_A 20 QGHMCIQKVIEDKLSSALKPTFLELVDKSC----------GCG-TSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN-I 87 (108)
T ss_dssp TTSCSHHHHHHHHHHHHHCCSEEEEEECCC----------SSS-CCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGG-C
T ss_pred cCCCCcHHHHHHHHHhhCCCcEEEEEeCCC----------CCC-ceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhc-C
Confidence 334678999999999999999999999994 354 9999999999999999999999999999999995 9
Q ss_pred ceEEeeeeCCCCC
Q 043786 152 HALSIVARTPSEV 164 (164)
Q Consensus 152 HALSIkT~TP~E~ 164 (164)
|||+|+||||+||
T Consensus 88 HALsi~t~TP~Ew 100 (108)
T 2kdn_A 88 HAFSMKCHTPLEY 100 (108)
T ss_dssp SCEEEEEECHHHH
T ss_pred ceEEEEecChHHH
Confidence 9999999999998
No 4
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=99.96 E-value=9.9e-30 Score=191.46 Aligned_cols=80 Identities=35% Similarity=0.525 Sum_probs=75.3
Q ss_pred CCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcc
Q 043786 73 GLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLH 152 (164)
Q Consensus 73 ~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IH 152 (164)
..|+++++|+++|+++|+|..|+|+|+|+ ||| +||+|+|||+.|+||++|+|||+||++|+++|+ .||
T Consensus 20 ~~M~~~~~I~~kL~~~l~p~~l~V~D~S~----------g~g-sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~-~IH 87 (105)
T 3o2e_A 20 GSMVSKSIVEERLRSMLSPQFLKVTDNSG----------GCG-AAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMP-QIH 87 (105)
T ss_dssp CCCCCHHHHHHHHHHHHCCSEEEEEECCB----------TTB-EEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGG-GEE
T ss_pred CcCcHHHHHHHHHHhhCCCCEEEEEECCC----------CCC-cEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHh-cCc
Confidence 34889999999999999999999999994 354 999999999999999999999999999999999 799
Q ss_pred eEEeeeeCCCCC
Q 043786 153 ALSIVARTPSEV 164 (164)
Q Consensus 153 ALSIkT~TP~E~ 164 (164)
||+|+||||+||
T Consensus 88 ALsi~t~TP~Ew 99 (105)
T 3o2e_A 88 AFTMKCLTPGEW 99 (105)
T ss_dssp EEEEEEECHHHH
T ss_pred eeEEEeCCHHHH
Confidence 999999999998
No 5
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=99.95 E-value=8e-29 Score=178.84 Aligned_cols=78 Identities=31% Similarity=0.528 Sum_probs=71.4
Q ss_pred CCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcc
Q 043786 73 GLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLH 152 (164)
Q Consensus 73 ~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IH 152 (164)
+.|...++|+++|+++|+|++|+|++ ||| +||+|+|||+.|+||++|+|||+||++|+++|...||
T Consensus 2 ~~Mm~~~~I~~~L~~~l~~~~l~V~~-------------g~g-shf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iH 67 (82)
T 3tr3_A 2 NAMVTTHDIKQWIETGLSESRVISAE-------------GDG-HHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIH 67 (82)
T ss_dssp --CCCHHHHHHHHHHHSTTCEEEEEE-------------ECS-SEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCS
T ss_pred CccchHHHHHHHHHhhCCCcEEEEEc-------------CCC-CeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 45678899999999999999999994 254 9999999999999999999999999999999977899
Q ss_pred eEEeeeeCCCCC
Q 043786 153 ALSIVARTPSEV 164 (164)
Q Consensus 153 ALSIkT~TP~E~ 164 (164)
||+|+|+||+||
T Consensus 68 AL~i~t~Tp~Ew 79 (82)
T 3tr3_A 68 ALSLKTYTPDEY 79 (82)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEeCCHHHH
Confidence 999999999998
No 6
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=99.95 E-value=2.3e-28 Score=175.44 Aligned_cols=76 Identities=34% Similarity=0.569 Sum_probs=70.6
Q ss_pred CcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceE
Q 043786 75 GSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHAL 154 (164)
Q Consensus 75 ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHAL 154 (164)
|-.+++|+++|+++|+|++|+|++ +|| +||+|+|||+.|+||++|+|||+||++|+++|+++||||
T Consensus 5 mm~~~~I~~~L~~~l~~~~l~V~G-------------~~g-sHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iHAL 70 (80)
T 1xs3_A 5 PLDAETIRKLIESGLPEARVDVQG-------------EDG-VHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHAL 70 (80)
T ss_dssp CCHHHHHHHHHHHHSSSCEEEEES-------------CTT-SCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCC
T ss_pred cCCHHHHHHHHHhhCCCcEEEEEc-------------CCC-CEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcceE
Confidence 457899999999999999999982 244 899999999999999999999999999999999779999
Q ss_pred EeeeeCCCCC
Q 043786 155 SIVARTPSEV 164 (164)
Q Consensus 155 SIkT~TP~E~ 164 (164)
+|+|+||+||
T Consensus 71 si~t~Tp~E~ 80 (80)
T 1xs3_A 71 QLKTLTPDEA 80 (80)
T ss_dssp EEEEECGGGC
T ss_pred EEEecCCCCC
Confidence 9999999998
No 7
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=99.95 E-value=1.6e-28 Score=186.94 Aligned_cols=78 Identities=38% Similarity=0.582 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceEE
Q 043786 76 SRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALS 155 (164)
Q Consensus 76 s~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHALS 155 (164)
..+++|+++|+++|+|+.|+|+|+|+ +||+ +||+|+|||+.|+||++|+|||+||++|+++|+. ||||+
T Consensus 30 m~~~~I~~~L~~~l~p~~l~V~DeS~---------~G~g-sHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~~-IHALs 98 (113)
T 1v9j_A 30 LSADYLREKLRQDLEAEHVEVEDTTL---------NRCA-TSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IHAFE 98 (113)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEEECCS---------SSSC-CCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGG-CSSEE
T ss_pred CcHHHHHHHHHhhCCCcEEEEEeccC---------CCCC-ceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHhc-CceEE
Confidence 36899999999999999999999994 1354 9999999999999999999999999999999995 99999
Q ss_pred eeeeCCCCC
Q 043786 156 IVARTPSEV 164 (164)
Q Consensus 156 IkT~TP~E~ 164 (164)
|+||||+||
T Consensus 99 i~t~TP~Ew 107 (113)
T 1v9j_A 99 QKTLTPEQW 107 (113)
T ss_dssp EEEECHHHH
T ss_pred EEecChHHH
Confidence 999999998
No 8
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=99.93 E-value=4.4e-27 Score=167.61 Aligned_cols=70 Identities=24% Similarity=0.521 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceEEe
Q 043786 77 RGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSI 156 (164)
Q Consensus 77 ~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHALSI 156 (164)
.+++|+++|+++|+|++|+|+|+| ||| +||+|+|||+.|+||++|+|||+||++|+++ +||||+|
T Consensus 7 ~~~~I~~~L~~~l~~~~l~V~d~S-----------G~g-~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e---~iHALsi 71 (76)
T 2kz0_A 7 TQSQLELLIRNAFPEAEITVTSLV-----------GDN-NHYSIKVISSQFQGKSKLEQHRMIYKVLDGL---NIHAIQI 71 (76)
T ss_dssp TTHHHHHHHHHHCTTEEEEEECCS-----------STT-SCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS---CCCSSSE
T ss_pred cHHHHHHHHHhhCCCcEEEEEECC-----------CCc-cEEEEEEEchHhCCCCHHHHHHHHHHHhccC---CceEEEE
Confidence 568999999999999999999999 244 8999999999999999999999999999998 6999999
Q ss_pred eeeCC
Q 043786 157 VARTP 161 (164)
Q Consensus 157 kT~TP 161 (164)
+|+||
T Consensus 72 ~t~tp 76 (76)
T 2kz0_A 72 QTGCK 76 (76)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 99998
No 9
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=99.93 E-value=9e-27 Score=172.96 Aligned_cols=73 Identities=37% Similarity=0.518 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHc-CCcceEE
Q 043786 77 RGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQ-NGLHALS 155 (164)
Q Consensus 77 ~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~-~~IHALS 155 (164)
.+++|+++|+++|+|+.|+|+. || +||+|+|||+.|+||++|+|||+||++|+++|+ .+||||+
T Consensus 7 ~~~~I~~~L~~~l~p~~l~V~G--------------~g-sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHALs 71 (97)
T 1ny8_A 7 ENNEIQSVLMNALSLQEVHVSG--------------DG-SHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVS 71 (97)
T ss_dssp CCHHHHHHHHHHHCCSEEEEEE--------------SS-SEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHhhCCCcEEEEEc--------------CC-ceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcceEE
Confidence 3489999999999999999982 44 899999999999999999999999999999998 4799999
Q ss_pred eeeeCCCCC
Q 043786 156 IVARTPSEV 164 (164)
Q Consensus 156 IkT~TP~E~ 164 (164)
|+|+||+||
T Consensus 72 i~t~TP~Ew 80 (97)
T 1ny8_A 72 IKAYTPAEW 80 (97)
T ss_dssp EEECCHHHH
T ss_pred eEecChHHH
Confidence 999999998
No 10
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=55.33 E-value=31 Score=23.50 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCc-ceEEEEEeccccCCCCHHHHHHHHHHHHHHH-HcCCcceE
Q 043786 77 RGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGE-THFNVKIVSKEFEGKSLVKRHRLIYDLLQEE-LQNGLHAL 154 (164)
Q Consensus 77 ~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~ge-sHF~I~IVS~~F~GkS~VkRHRlVy~~Lkde-i~~~IHAL 154 (164)
..++|++.|++.+++..+.+.. |+.. |.. ... |-+.|.|+.+. +.+...+.++.. .|.+. +. +.+
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFG-S~Ar----G~~--~~~~SDiDllV~~~~--~~~~~~~~~l~~-~l~~~~~~---~~v 69 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYG-SVVE----GDY--SIGLSDIDVAIVSDV--FEDRNRKLEFFG-KITKKFFD---SPF 69 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEES-HHHH----CCS--SSCCCSEEEEEECGG--GGSHHHHHHHHH-HHHHHTTT---CSE
T ss_pred HHHHHHHHHHHHcCCcEEEEEE-EEEe----CCC--CCCCCceEEEEEeCC--CCCHHHHHHHHH-HHHHhhcC---CCe
Confidence 5788999999999988888875 2211 110 124 78999999886 456666665544 44444 32 457
Q ss_pred EeeeeCCCCC
Q 043786 155 SIVARTPSEV 164 (164)
Q Consensus 155 SIkT~TP~E~ 164 (164)
.+.++|+++|
T Consensus 70 d~~v~~~~~~ 79 (96)
T 1ylq_A 70 EFHILTKKEW 79 (96)
T ss_dssp EEEEECHHHH
T ss_pred EEEEECHHHH
Confidence 7777777653
No 11
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=37.24 E-value=18 Score=25.69 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHhcCCC
Q 043786 73 GLGSRGMRIRDKLEKELRP 91 (164)
Q Consensus 73 ~~ms~~~~IkekL~~af~p 91 (164)
..+++..-|+++|++.+|.
T Consensus 54 s~~TLk~gIE~~L~~~vPe 72 (88)
T 1xhj_A 54 STITLKAGIERALHEEVPG 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHhCCC
Confidence 3467888999999999965
No 12
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=24.75 E-value=1.4e+02 Score=22.06 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEE
Q 043786 73 GLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKI 122 (164)
Q Consensus 73 ~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~I 122 (164)
+.++++..|.+.|.+.|+...|...-- .. .-|.|.|
T Consensus 36 ~~~~ra~~laqeLl~tFp~~~V~l~pg------------~~--G~FeV~v 71 (117)
T 2ljk_A 36 GFEATYLELASAVKEQYPGIEIESRLG------------GT--GAFEIEI 71 (117)
T ss_dssp TCHHHHHHHHHHHTTTCSSSCCEEEEC------------SS--SCEEEET
T ss_pred CCHHHHHHHHHHHHhhCCcceEEEecC------------CC--ceEEEEE
Confidence 456899999999999999876665531 12 4899986
No 13
>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A {Pyrococcus horikoshii}
Probab=23.03 E-value=1.6e+02 Score=22.01 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCCceEEEEe
Q 043786 78 GMRIRDKLEKELRPVVLEVED 98 (164)
Q Consensus 78 ~~~IkekL~~af~p~~leV~D 98 (164)
.+++.++|.+-||+..+++.+
T Consensus 20 ~eKV~~Al~nifp~~~i~~~~ 40 (138)
T 3d7a_A 20 IRKVKKAMLNLIPGLQFEAFD 40 (138)
T ss_dssp HHHHHHHHHHHSTTCEEEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEe
Confidence 678999999999998888876
No 14
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=22.21 E-value=55 Score=23.38 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=22.0
Q ss_pred CcccCCCCCcCCCCcceEEEEEeccccCCCCHHH
Q 043786 101 YQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVK 134 (164)
Q Consensus 101 ~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~Vk 134 (164)
+.|+-+.+.+.......|+|.|+.+.=.|||.|-
T Consensus 5 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli 38 (191)
T 2a5j_A 5 HHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLL 38 (191)
T ss_dssp -----CCCCCCCTTCEEEEEEEESSTTSSHHHHH
T ss_pred ccccccccccccccCcceEEEEECcCCCCHHHHH
Confidence 3344444444344567999999999999999974
No 15
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.69 E-value=19 Score=17.26 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=15.7
Q ss_pred EEEEeccccCCCCHHHHHHHHH
Q 043786 119 NVKIVSKEFEGKSLVKRHRLIY 140 (164)
Q Consensus 119 ~I~IVS~~F~GkS~VkRHRlVy 140 (164)
...+-...|...+.|.+|+.+.
T Consensus 4 ~C~~C~k~f~~~~~l~~H~~~H 25 (26)
T 2lvu_A 4 VCERCGKRFVQSSQLANHIRHH 25 (26)
Confidence 3344567788889999997653
No 16
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=21.05 E-value=1.8e+02 Score=21.24 Aligned_cols=65 Identities=9% Similarity=0.138 Sum_probs=43.0
Q ss_pred HHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCC---CCHHHHHHHHHHHHHHHHcCCcceEEeeeeCC
Q 043786 85 LEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEG---KSLVKRHRLIYDLLQEELQNGLHALSIVARTP 161 (164)
Q Consensus 85 L~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~G---kS~VkRHRlVy~~Lkdei~~~IHALSIkT~TP 161 (164)
|...|+.+.|.|+|.+.. .-+...-=+--|.| .+...-++...++.+..+..+|.+|.|+...|
T Consensus 11 I~as~NNTivtiTD~~G~-------------~i~~~S~G~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~ 77 (117)
T 3r8n_K 11 IHASFNNTIVTITDRQGN-------------ALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGP 77 (117)
T ss_dssp EEECSSCEEEEEECTTSC-------------CSEEEETGGGSCCGGGGSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECS
T ss_pred EEcccCCEEEEEEcCCCC-------------EEEEEcCCccccCCCccCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCC
Confidence 346789999999998632 22222111223444 45567777777887777666899999998876
Q ss_pred C
Q 043786 162 S 162 (164)
Q Consensus 162 ~ 162 (164)
.
T Consensus 78 G 78 (117)
T 3r8n_K 78 G 78 (117)
T ss_dssp S
T ss_pred C
Confidence 3
No 17
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.16 E-value=28 Score=16.51 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.6
Q ss_pred eccccCCCCHHHHHHHHH
Q 043786 123 VSKEFEGKSLVKRHRLIY 140 (164)
Q Consensus 123 VS~~F~GkS~VkRHRlVy 140 (164)
-...|...+.|.+|+.++
T Consensus 8 C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 8 CDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCCCCTTTHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHh
Confidence 346799999999998775
Done!