BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043787
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/437 (47%), Positives = 277/437 (63%), Gaps = 22/437 (5%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
M TG IEV + ++N LP D+ EE RL+YR LDLRR +M +
Sbjct: 87 MATGEIEVLASSLTIINRA-DVLPL------DSNHVNTEEARLKYRYLDLRRPEMAQRLK 139
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
R K+ L+RR+++D HGF++IETP+L+++TPEGARDYLVPSRV G FYALPQSPQLFK
Sbjct: 140 TRAKITSLVRRFMDD-HGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFK 198
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LM+SGFD+YYQI +CFRDEDLRADRQPEFTQ+D+E +F + + E L+R ++LE
Sbjct: 199 QLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLE 258
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKS-GGI 239
+K V L + FP +T+AEA RYGSD+PD R ++L DV+D+ F VF+ G
Sbjct: 259 VKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGR 317
Query: 240 IKVLCVPSGAKTYSNTALKKGDIYNEAIK-SGAKGLPFLKVLD-AGGVEGIPALVSS-LG 296
+ L VP GA + K+ D Y +K GAKGL ++KV + A G+EGI + V+ L
Sbjct: 318 VAALRVPGGA----SLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLN 373
Query: 297 PSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDF 356
E +L R +A D+I F + V + LR V +LGL D SK + LW+ DF
Sbjct: 374 AEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDF 433
Query: 357 PMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS----ARALAYDMVYNGVEIGGGSLRIYK 412
PMFE +D E L A+HHPFT+P +L + A A AYDMV NG E+GGGS+RI+
Sbjct: 434 PMFE-DDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHN 492
Query: 413 REVQQKVLEIVGISPEQ 429
++QQ V I+GI+ E+
Sbjct: 493 GDMQQTVFGILGINEEE 509
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/437 (47%), Positives = 277/437 (63%), Gaps = 22/437 (5%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
M TG IEV + ++N LP D+ EE RL+YR LDLRR +M +
Sbjct: 87 MATGEIEVLASSLTIINRA-DVLPL------DSNHVNTEEARLKYRYLDLRRPEMAQRLK 139
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
R K+ L+RR+++D HGF++IETP+L+++TPEGARDYLVPSRV G FYALPQSPQLFK
Sbjct: 140 TRAKITSLVRRFMDD-HGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFK 198
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LM+SGFD+YYQI +CFRDEDLRADRQPEFTQ+D+E +F + + E L+R ++LE
Sbjct: 199 QLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLE 258
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKS-GGI 239
+K V L + FP +T+AEA RYGSD+PD R ++L DV+D+ F VF+ G
Sbjct: 259 VKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGR 317
Query: 240 IKVLCVPSGAKTYSNTALKKGDIYNEAIK-SGAKGLPFLKVLD-AGGVEGIPALVSS-LG 296
+ L VP GA + K+ D Y +K GAKGL ++KV + A G+EGI + V+ L
Sbjct: 318 VAALRVPGGA----SLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLN 373
Query: 297 PSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDF 356
E +L R +A D+I F + V + LR V +LGL D SK + LW+ DF
Sbjct: 374 AEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDF 433
Query: 357 PMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS----ARALAYDMVYNGVEIGGGSLRIYK 412
PMFE +D E L A+HHPFT+P +L + A A AYDMV NG E+GGGS+RI+
Sbjct: 434 PMFE-DDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHN 492
Query: 413 REVQQKVLEIVGISPEQ 429
++QQ V I+GI+ E+
Sbjct: 493 GDMQQTVFGILGINEEE 509
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 352 bits (902), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 200/435 (45%), Positives = 278/435 (63%), Gaps = 22/435 (5%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTA--DDAKDFVKEEIRLRYRCLDLRRQQMNHN 58
+ TG +EV + ++VL ++ PF V + + EE+RL+YR LDLRR++M N
Sbjct: 85 LATGRVEVELSALEVLAEAKTP-PFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQEN 143
Query: 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQL 118
+ LRH+V+K I +L D GFV++ETP L++STPEGARD+LVP R +PG FYALPQSPQL
Sbjct: 144 LRLRHRVIKAIWDFL-DREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQL 202
Query: 119 FKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178
FKQMLMV+G D+Y+QIARCFRDEDLRADRQP+FTQLD+E++F ++D+L LNE L+ +F
Sbjct: 203 FKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVF 262
Query: 179 LEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGG 238
E V+LP PFPRL+Y EAM RYGSD+PD RF L+L +V +F +S FRVF ++
Sbjct: 263 REALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAES--- 319
Query: 239 IIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPS 298
+K L +P K S + ++ A + A+GL + +V + G G+ + +
Sbjct: 320 -VKALALP---KALSRKEV--AELEEVAKRHKAQGLAWARVEEGGFSGGVAKFLEPV--- 370
Query: 299 NKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPM 358
+E LL A P D +LF G L +R A LGL LW+ DFP+
Sbjct: 371 -REALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGL-KREGFRFLWVVDFPL 428
Query: 359 FEWNDSEQRLEALHHPFTAPNPEDM----DDLSSARALAYDMVYNGVEIGGGSLRIYKRE 414
EW++ E+ +HHPFT+P+PED+ D RALAYD+V NGVE+GGGS+RI+
Sbjct: 429 LEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPR 488
Query: 415 VQQKVLEIVGISPEQ 429
+Q +V ++GI E+
Sbjct: 489 LQARVFRLLGIGEEE 503
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 308 bits (788), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 183/436 (41%), Positives = 266/436 (61%), Gaps = 32/436 (7%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVK--EEIRLRYRCLDLRRQQMNHN 58
M TG IE+ V+ ++LNA + KLPF + K+FVK E +RL+YR LDLR QM +N
Sbjct: 95 MPTGEIEIKVKTAELLNACK-KLPF------EIKNFVKKTEALRLQYRYLDLRSFQMQYN 147
Query: 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQL 118
+ LR ++V +R YL ++HGFV+IETP L + TP GA+++LVPSR +PG FY+LPQSPQ
Sbjct: 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSR-EPGKFYSLPQSPQQ 206
Query: 119 FKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178
FKQ+LMV G D+Y+Q+ARC+RDE R DRQPEFTQ+D+E++F + L E L++ +
Sbjct: 207 FKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSW 266
Query: 179 LEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSL-KSG 237
KD + PFP +T+AE ++ YG+D+PDTRF +++ D+SD+F + D+L K
Sbjct: 267 PNDKD-PVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPH 325
Query: 238 GIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAK---GLPFLKVLDAGGVEGIPALVSS 294
G +K +C+P GAK LK+ DI E+I++ A L V + +
Sbjct: 326 GTVKAICIPEGAK-----YLKRKDI--ESIRNFAADHFNQEILPVFLNANRNWNSPVANF 378
Query: 295 LGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHEL---GLI--DNSKHS 349
+ S + +L+ D++L G L +LR A L G++ D + S
Sbjct: 379 IMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFS 438
Query: 350 ILWITDFPMFEWNDSEQR-LEALHHPFTAPNPEDMDDLSS----ARALAYDMVYNGVEIG 404
LW+ DFP+F + R LE+ HHPFTAP+P D+ L + AR+ YD+V NG EIG
Sbjct: 439 FLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIG 498
Query: 405 GGSLRIYKREVQQKVL 420
GGS+RI+ E+Q+ +L
Sbjct: 499 GGSIRIHNAELQRYIL 514
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 25/221 (11%)
Query: 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL- 60
KTG + + +++L LP D +E R R R LDL + N
Sbjct: 131 KTGELSIHCTELRLLTKALRPLP------DKFHGLQDQEARYRQRYLDLISNDESRNTFK 184
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQL 118
+R +++ IR+++ + GF+E+ETP++ + P GA R ++ Y L +P+L
Sbjct: 185 VRSQILSGIRQFMVN-RGFMEVETPMM-QVIPGGAAARPFITHHNALDLDMY-LRIAPEL 241
Query: 119 FKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178
+ + L+V GF++ ++I R FR+E + PEFT +++ +A+ D++ L E L R +
Sbjct: 242 YLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLA 301
Query: 179 LEI--------KDVQLP--NPFPRLTYAEAMSRYGSDRPDT 209
+I DV L PF +LT EA+ +Y RP+T
Sbjct: 302 QDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKY---RPET 339
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 107/219 (48%), Gaps = 27/219 (12%)
Query: 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEI--RLRYRCLDLRRQQMNHNI 59
K GF E+ E + VLN + LP D VK E+ RL R +DLRR ++
Sbjct: 85 KLGF-EILPEKIVVLNRAETPLPL------DPTGKVKAELDTRLDNRFMDLRRPEVMAIF 137
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLF 119
+R V K +R + + +GF+EI TP + + EG + + F A QSPQL+
Sbjct: 138 KIRSSVFKAVRDFFHE-NGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLA--QSPQLY 194
Query: 120 KQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTP-LDDMLRLNEDLIRKI 177
KQ++M SG D+ Y+IA FR E+ R E +D E+AF ++++ E L+
Sbjct: 195 KQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHA 254
Query: 178 F----------LEIKDVQLPN---PFPRLTYAEAMSRYG 203
L+I + +L PFPR++Y +A+ G
Sbjct: 255 INYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILG 293
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 393 AYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIF 432
A+D+ Y GVEI G R ++ ++ + ++ G++PE F F
Sbjct: 352 AFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEF 391
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDL-RRQQMNHNIL 60
+TG + + +++L LP D +E+R R R LDL + +
Sbjct: 131 QTGELSIHCTELRLLTKALRPLP------DKFHGLQDQEVRYRQRYLDLIANDKSRQTFV 184
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQL 118
+R K++ IR+++ GF+E+ETP++ + P GA R ++ Y L +P+L
Sbjct: 185 VRSKILAAIRQFMV-ARGFMEVETPMM-QVIPGGASARPFITHHNALDLDMY-LRIAPEL 241
Query: 119 FKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178
+ + L+V GF++ ++I R FR+E + PEFT +++ +A+ D++ L E L R +
Sbjct: 242 YLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLA 301
Query: 179 LEIKDV----------QLPNPFPRLTYAEAMSRYGSDRPDT 209
E+ PF +LT EA+ +Y RP+T
Sbjct: 302 QEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKY---RPET 339
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 27/219 (12%)
Query: 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEI--RLRYRCLDLRRQQMNHNI 59
K GF E+ E + VLN + LP D VK E+ RL R +DLRR ++
Sbjct: 85 KLGF-EILPEKIVVLNRAETPLPL------DPTGKVKAELDTRLNNRFMDLRRPEVMAIF 137
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLF 119
+R V K +R + + +GF+EI TP + + EG + + F A +SPQL+
Sbjct: 138 KIRSSVFKAVRDFFHE-NGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLA--ESPQLY 194
Query: 120 KQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTP-LDDMLRLNEDLIRKI 177
K+++M SG D+ Y+IA FR E+ R E +D E+AF ++++ E L+
Sbjct: 195 KEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHA 254
Query: 178 F----------LEIKDVQLPN---PFPRLTYAEAMSRYG 203
L+I + +L PFPR++Y +A+ G
Sbjct: 255 INYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILG 293
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 393 AYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIF 432
A+D+ Y GVEI G R ++ ++ + ++ G++PE F F
Sbjct: 352 AFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEF 391
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 26/223 (11%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEI--RLRYRCLDLRRQQMNHNILLRH 63
IE+ E + +L+ ++ LP D VK +I RLR R LDLRRQ+M I ++
Sbjct: 85 IELHAEEITLLSKAKAPLPL------DVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQS 138
Query: 64 KVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQML 123
+K R L GF+EI TP + S EG L P + G L QSPQL+K+ L
Sbjct: 139 LALKAFRETLYK-EGFIEIFTPKIIASATEGGAQ-LFPV-IYFGKEAFLAQSPQLYKE-L 194
Query: 124 MVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK 182
M ++ +++A +R E+ EF +D+E+AF +D+++L E ++ I IK
Sbjct: 195 MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIK 254
Query: 183 -----DVQLPN--------PFPRLTYAEAMSRYGSDRPDTRFS 212
++++ N P RL Y EA+ S + +F
Sbjct: 255 EEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKGYNIKFG 297
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 347 KHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGG 406
K + +I D+P S+ R PF + + +LS + +D++Y +EI G
Sbjct: 313 KEDLYFIVDWP------SDAR------PFYTKSKSENPELSES----FDLIYKFLEIVSG 356
Query: 407 SLRIYKREVQQKVLEIVGISPEQFIF 432
S R +KREV ++ L+ G+ PE F F
Sbjct: 357 STRNHKREVLEEALKKKGLKPESFEF 382
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 40 EIRLRYRCLDL-RRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVL-SRSTPEGARD 97
E R R R LDL + + R +++ +RRYL D HG++E+ETP++ + + AR
Sbjct: 154 EQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYL-DSHGYLEVETPMMHAVAGGAAARP 212
Query: 98 YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDME 157
++ T Y + + +L + L+V G +K Y+I R FR+E + PEFT L++
Sbjct: 213 FITHHNALDMTLY-MRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELY 271
Query: 158 LAFTPLDDMLRLNEDLIRKIFLEI 181
A+ D+++L E+LI I E+
Sbjct: 272 EAYADFRDIMKLTENLIAHIATEV 295
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 30/231 (12%)
Query: 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQ-MNHNIL 60
K G + + + +L+ LP L D +E R R R LDL + +
Sbjct: 124 KKGELSIIPYEITLLSPCLHMLPHLHFGLKD------KETRYRQRYLDLILNDFVRQKFI 177
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQL 118
+R K++ IR +L+++ GF+EIETP+++ P GA + ++ Y + +P+L
Sbjct: 178 IRSKIITYIRSFLDEL-GFLEIETPMMN-IIPGGAVAKPFITYHNELDMNLY-MRIAPEL 234
Query: 119 FKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178
+ +ML+V G D+ Y+I R FR+E + PEFT + +A+ D++ + E ++ +
Sbjct: 235 YHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMV 294
Query: 179 LEIK-----------------DVQLPNPFPRLTYAEAMSR-YGSDRPDTRF 211
I DV PF R+ E + + G P+T
Sbjct: 295 KHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNL 345
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 30/231 (12%)
Query: 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQ-MNHNIL 60
K G + + + +L+ LP L D +E R R R LDL + +
Sbjct: 124 KKGELSIIPYEITLLSPCLHMLPHLHFGLKD------KETRYRQRYLDLILNDFVRQKFI 177
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQL 118
+R K++ IR +L+++ GF+EIETP+++ P GA + ++ Y + +P+L
Sbjct: 178 IRSKIITYIRSFLDEL-GFLEIETPMMN-IIPGGAVAKPFITYHNELDMNLY-MRIAPEL 234
Query: 119 FKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178
+ +ML+V G D+ Y+I R FR+E + PEFT + +A+ D++ + E ++ +
Sbjct: 235 YHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMV 294
Query: 179 LEIK-----------------DVQLPNPFPRLTYAEAMSR-YGSDRPDTRF 211
I DV PF R+ E + + G P+T
Sbjct: 295 KHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNL 345
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 34/216 (15%)
Query: 4 GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIR------LRYRCLDLRRQQMNH 57
G +EV + V+VL+ P + KEE R L YR + LR ++
Sbjct: 73 GGLEVQAKEVEVLSPALEPTPV---------EIPKEEWRANPDTLLEYRYVTLRGEKARA 123
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQ 117
+ ++ +V+ RRYL D F EI TP + R+ EG + + A QSPQ
Sbjct: 124 PLKVQAALVRGFRRYL-DRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLA--QSPQ 180
Query: 118 LFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTP-LDDMLRLNEDLIR 175
L+KQ +MV F++ Y++A +R E+ R E+ LD+E+ F +D++RL E L+
Sbjct: 181 LYKQ-IMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLA 239
Query: 176 KIFLEIKDV-------------QLPNPFPRLTYAEA 198
++ E + P PRLT+AEA
Sbjct: 240 EMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEA 275
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 393 AYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQF 430
++D+++ G+EI G RI++ E + L+ G+ PE F
Sbjct: 336 SFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAF 373
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 24/236 (10%)
Query: 4 GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDL-RRQQMNHNILLR 62
G + V +++L LP D +E R R R +DL + R
Sbjct: 154 GELSVKCTQLRLLAKALRPLP------DKFHGLADQETRYRQRYVDLIVTPETRTTFRAR 207
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQM 122
K + IR+++ D F+E+ETP+L A V L +P+L+ +
Sbjct: 208 TKAIASIRKFMGDAD-FMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKR 266
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRK------ 176
L+V GF++ ++I R FR+E + PEFT ++ A+T ++ E LIR+
Sbjct: 267 LIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDAL 326
Query: 177 ----IFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228
I + +++ L PF RLT +A+ +Y D QL+D D FL S +
Sbjct: 327 GTATIQYQGRELDLAQPFHRLTITQAIQKYAPSYTDG----QLSD--DAFLRSELK 376
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKD--------FVKEEIRLRYRCLDLRRQQMNH 57
+E+ + + ++ LP L+ A ++ V + RL YR +DLR
Sbjct: 117 LEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQA 176
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQ 117
++ V +L R YL F E+ TP L + EG + + + L QSPQ
Sbjct: 177 IFRIQAGVCELFREYLA-TKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAY--LAQSPQ 233
Query: 118 LFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF 160
KQ L+V+ F++ Y+I FR E+ R EFT LDME+AF
Sbjct: 234 FNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAF 277
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 375 FTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPE 428
+T P+P + +S YD G EI G+ RI+ + Q+ ++ G+SPE
Sbjct: 386 YTMPDPANPKYSNS-----YDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPE 434
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKD--------FVKEEIRLRYRCLDLRRQQMNH 57
+E+ + + ++ LP L+ A ++ V + RL YR +DLR
Sbjct: 120 LEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQA 179
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQ 117
++ V +L R YL F E+ TP L + EG + + + L QSPQ
Sbjct: 180 IFRIQAGVCELFREYLA-TKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAY--LAQSPQ 236
Query: 118 LFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF 160
KQ L+V+ F++ Y+I FR E+ R EFT LDME+AF
Sbjct: 237 FNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAF 280
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 375 FTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPE 428
+T P+P + + +YD G EI G+ RI+ + Q+ ++ G+SPE
Sbjct: 389 YTMPDPAN-----PKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPE 437
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST-------PEGARDYLVPSRVQPGTFY 110
N+L R ++ IRR+ D G +E+ETP +S++T P R ++ P Q Y
Sbjct: 16 NLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDIHLFPFETR-FVGPGHSQGINLY 73
Query: 111 ALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLN 170
L SP+ + L+ +G +Q+ R FR+E++ PEFT L+ + P DM RL
Sbjct: 74 -LMTSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRHHNPEFTMLEW---YRPHYDMYRLM 129
Query: 171 EDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY------GSDRPDTRFSLQLNDVSDI 221
+ + + ++ D Q P L+Y +A R+ +D+ R + D+S+I
Sbjct: 130 NE-VDDLLQQVLDCQ---PAESLSYQQAFQRHLEIDPLSADKTQLREAAAKLDLSNI 182
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|C Chain C, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|E Chain E, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|G Chain G, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 328
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 23/172 (13%)
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSR---VQPGTFYA--- 111
N+L R ++ IRR+ D G +E+ETP +S++T +LVP V PG
Sbjct: 18 NLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDI--HLVPFETRFVGPGHSQGMNL 74
Query: 112 -LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRL- 169
L SP+ + L+V+G +Q+ R FR+E++ PEFT L+ + P DM RL
Sbjct: 75 WLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEW---YRPHYDMYRLM 131
Query: 170 NE--DLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVS 219
NE DL++++ L+ + L+Y +A RY P + QL +V+
Sbjct: 132 NEVDDLLQQV-LDCPAAE------SLSYQQAFLRYLEIDPLSADKTQLREVA 176
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|B Chain B, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|C Chain C, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|D Chain D, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
Length = 345
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 23/172 (13%)
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSR---VQPGTFYA--- 111
N+L R ++ IRR+ D G +E+ETP +S++T +LVP V PG
Sbjct: 35 NLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDI--HLVPFETRFVGPGHSQGMNL 91
Query: 112 -LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRL- 169
L SP+ + L+V+G +Q+ R FR+E++ PEFT L+ + P DM RL
Sbjct: 92 WLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEW---YRPHYDMYRLM 148
Query: 170 NE--DLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVS 219
NE DL++++ L+ + L+Y +A RY P + QL +V+
Sbjct: 149 NEVDDLLQQV-LDCPAAE------SLSYQQAFLRYLEIDPLSADKTQLREVA 193
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 26 LVTTADDAKDFVK--EEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIE 83
L+ A+ +VK ++ RL R LDLR ++ L R +L FVEI
Sbjct: 209 LLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTS-QKFVEIH 267
Query: 84 TPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDL 143
TP L + EG + + A QSPQL+KQM ++ F K +++ FR E+
Sbjct: 268 TPKLIGCSSEGGSNIFEVKYFDRKAYLA--QSPQLYKQMAIMGDFRKVFEVGPVFRAENS 325
Query: 144 RADRQ-PEFTQLDMELAFTP-LDDMLRLNEDLIRKIFLEIKD----------VQLP---- 187
R EF LD+E+ + + + E L IF EI Q P
Sbjct: 326 NTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDL 385
Query: 188 --NPFPRLTYAEAM 199
PF RLTY EA+
Sbjct: 386 IYRPFLRLTYKEAI 399
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 4 GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRH 63
G EV VE ++V+ AV S+ P + + E+ L YR L +R + + + ++
Sbjct: 86 GGAEVHVEKLEVIQAV-SEFPI-----PENPEQASPELLLDYRHLHIRTPKASAIMKVKE 139
Query: 64 KVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA-LPQSPQLFKQM 122
++ R +L G+ E+ P+L EG +++ YA L QS QL+ +
Sbjct: 140 TLIMAAREWLLK-DGWHEVFPPILVTGAVEGGATLF---KLKYFDKYAYLSQSAQLYLEA 195
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLI-----RK 176
+ G +K + + FR E R R EF L++E A+ L D++++ E+L+ R
Sbjct: 196 -AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRT 254
Query: 177 IFLEIKDVQL-----------PNPFPRLTYAEAM 199
+ L K++++ PFPR++Y EA+
Sbjct: 255 LELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAI 288
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 30/229 (13%)
Query: 42 RLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVP 101
+++ R + +R + + LR ++ R+Y D H F EI+ P + ++ EG
Sbjct: 139 KMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNH-FTEIQPPTIVKTQCEGGSTLFKL 197
Query: 102 SRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF 160
+ L QS QL+ + ++ S K + + +R E R R E+ L+ EL F
Sbjct: 198 QYFNEPAY--LTQSSQLYLESVIAS-LGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPF 254
Query: 161 TPLDDMLRLNEDLIRKIFLEIKDV------------QLPN-PFPRLTYAEAMSRYGSDR- 206
+D+L EDL+ + + V +LP PF R+TYA+A+ +Y +D
Sbjct: 255 ISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAI-KYCNDHG 313
Query: 207 ---PDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTY 252
D F D+S E P R +D + G I ++ PS K +
Sbjct: 314 ILNKDKPFEYG-EDIS----EKPERQMTDEI--GCPIFMIHFPSKMKAF 355
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 39/237 (16%)
Query: 84 TPVLSRSTPEGARDYLVPSRVQP-GTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDED 142
+P+ P+ A + + P+ V G L S L KQ+ + G +K + ++ R E
Sbjct: 43 SPITDPLWPDPAGEGIRPAEVDVYGVRMRLTHSMILHKQLAIAMGLEKIFVLSPNIRLES 102
Query: 143 LRAD---RQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPR------L 193
R D EFTQLD E+ + D++RL E+LI +F + ++ FPR
Sbjct: 103 RRKDDGRHSYEFTQLDFEIEGAKMKDVMRLIEELIYGLFRKAEE-WTGREFPRARHFKVY 161
Query: 194 TYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPF------RVFSDSLKSGGIIKV--LCV 245
Y + + +GSD + + + +E PF R F D + G+ K L +
Sbjct: 162 DYKDILEEFGSD-----------EKASMEMEEPFWIVNIPREFYDR-EENGVWKNYDLIL 209
Query: 246 PSGAKTYSNTALKKGDIYNEAIKSGAKGL------PFLKVLDAGGVEGIPALVSSLG 296
P G S+ ++ + K A GL P+L++ AG ++ P+ + +G
Sbjct: 210 PYGYGEVSSGGEREWEYEKIVAKIRAAGLKEDSFRPYLEIARAGKLK--PSAGAGIG 264
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 82 IETPVLSRSTPEGARDYLVPSRVQP-GTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRD 140
I +P+ P+ A + + P+ V+ G L S L KQ+ + G K + ++ R
Sbjct: 41 IISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRL 100
Query: 141 EDLRAD---RQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV---QLPNP--FPR 192
E + D EFTQLD E+ ++D++RL E L+ +F + ++ + P F
Sbjct: 101 ESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEV 160
Query: 193 LTYAEAMSRYGSD 205
Y+E + +GSD
Sbjct: 161 FEYSEVLEEFGSD 173
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 20/175 (11%)
Query: 78 GFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARC 137
G+VE+ P L ++ EG +F L QS QL+ + + + D + IA+
Sbjct: 152 GYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSF--LTQSSQLYLETCIPTLGD-VFCIAQS 208
Query: 138 FRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLI-------------RKIFLEIKD 183
+R E R R E+ ++ E F LDD++ E+L+ +K+ I
Sbjct: 209 YRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINP 268
Query: 184 VQLP--NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKS 236
P PF R+ Y +A+ + F DI E+ R +D++
Sbjct: 269 KFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDI-AEAAERFMTDTINK 322
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 20/175 (11%)
Query: 78 GFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARC 137
G+VE+ P L ++ EG +F L QS QL+ + + + D + IA+
Sbjct: 150 GYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSF--LTQSSQLYLETCIPTLGD-VFCIAQS 206
Query: 138 FRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLI-------------RKIFLEIKD 183
+R E R R E+ ++ E F LDD++ E+L+ +K+ I
Sbjct: 207 YRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINP 266
Query: 184 VQLP--NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKS 236
P PF R+ Y +A+ + F DI E+ R +D++
Sbjct: 267 KFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDI-AEAAERFMTDTINK 320
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 130 KYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNP 189
+ ++I C+R E A EFT L++ TPL++ + ED+ R + LE ++
Sbjct: 171 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWV-LEAAGIR---E 226
Query: 190 FPRLTYAEAMSRYGSDRPDTRFSLQL--NDVSDIFLESPFRVFSDSLKSG-GIIKVLCVP 246
F +T E+ YG + L+L + FL+ + +F + G G+ ++L +
Sbjct: 227 FELVT--ESSVVYGDTVDVMKGDLELASGAMGPHFLDEKWEIFDPWVGLGFGLERLLMIR 284
Query: 247 SGAKTYSNTA 256
G + + A
Sbjct: 285 EGTQHVQSMA 294
>pdb|3DSQ|A Chain A, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
pdb|3DSQ|B Chain B, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
Length = 288
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 130 KYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNP 189
+ ++I C+R E A EFT L++ TPL++ + ED+ R + LE ++
Sbjct: 151 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWV-LEAAGIR---E 206
Query: 190 FPRLTYAEAMSRYGSDRPDTRFSLQL--NDVSDIFLESPFRVFSDSLKSG-GIIKVLCVP 246
F +T E+ YG + L+L + FL+ + +F + G G+ ++L +
Sbjct: 207 FELVT--ESSVVYGDTVDVMKGDLELASGAMGPHFLDEKWEIFDPWVGLGFGLERLLMIR 264
Query: 247 SGAKTYSNTA 256
G + + A
Sbjct: 265 EGTQHVQSMA 274
>pdb|1O4Y|A Chain A, The Three-Dimensional Structure Of Beta-Agarase A From
Zobellia Galactanivorans
Length = 288
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 177 IFLEIK----DVQLPNPFPRLTYAEA-----MSRYGSDRPDTRFSLQLNDVSDIFLESPF 227
+++EIK D L N F LT E M YGSDR T F+ +++ F+ +PF
Sbjct: 104 VYMEIKAKIMDQVLANAFWTLTDDETQEIDIMEGYGSDRGGTWFAQRMHLSHHTFIRNPF 163
>pdb|1URX|A Chain A, Crystallographic Structure Of Beta-Agarase A In Complex
With Oligoagarose
Length = 282
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 177 IFLEIK----DVQLPNPFPRLTYAEA-----MSRYGSDRPDTRFSLQLNDVSDIFLESPF 227
+++EIK D L N F LT E M YGSDR T F+ +++ F+ +PF
Sbjct: 104 VYMEIKAKIMDQVLANAFWTLTDDETQSIDIMEGYGSDRGGTWFAQRMHLSHHTFIRNPF 163
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
Albicans
Length = 485
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 11 EHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIR 70
EH + LN+V+ ++ +DAKD + E+ +L ++ ++ + LR K+ ++
Sbjct: 51 EHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110
Query: 71 RYLEDVHGFVEIETPVLSRS-TPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFD 129
E V + E L R+ TPE +Y P ++ T P + +L + G+D
Sbjct: 111 IVHESVVDSQDEENNELVRTWTPE---NYKKPEQIAAAT--GAPAKLSHHEVLLRLDGYD 165
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
Length = 485
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 11 EHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIR 70
EH + LN+V+ ++ +DAKD + E+ +L ++ ++ + LR K+ ++
Sbjct: 51 EHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110
Query: 71 RYLEDVHGFVEIETPVLSRS-TPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFD 129
E V + E L R+ TPE +Y P ++ T P + +L + G+D
Sbjct: 111 IVHESVVDSQDEENNELVRTWTPE---NYKKPEQIAAAT--GAPAKLSHHEVLLRLDGYD 165
>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas
Putida
Length = 272
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 23/142 (16%)
Query: 291 LVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSI 350
L+ G + + LL AGPS+L++ N+ + A L L + HS
Sbjct: 124 LLLGAGGAVRGALLPFLQAGPSELVI--------ANRDM-------AKALALRNELDHSR 168
Query: 351 LWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGS--- 407
L I+ + E + + A TA P D+ ALAY++ Y G G
Sbjct: 169 LRISRYEALEGQSFDIVVNATSASLTADLPPLPADVLGEAALAYELAY-----GKGLTPF 223
Query: 408 LRIYKREVQQKVLEIVGISPEQ 429
LR+ + + Q ++ + VG+ EQ
Sbjct: 224 LRLAREQGQARLADGVGMLVEQ 245
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 69 IRRYLEDVH-------GFVEIETPVLS------RSTPEGARDYLVPSRVQPGTFYAL--P 113
+R+YL DV GF E ++PVL R E + + + G AL
Sbjct: 45 LRKYLFDVFHSTARKFGFEEYDSPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPE 104
Query: 114 QSPQLFKQMLMVSGF----DKYYQIARCFRDEDLRADRQPEFTQLDMEL 158
+P L +Q+L K+Y I +C+R E + R+ E Q +M++
Sbjct: 105 MTPSLARQLLAKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDI 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,717,518
Number of Sequences: 62578
Number of extensions: 588344
Number of successful extensions: 1709
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1632
Number of HSP's gapped (non-prelim): 46
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)