Query 043787
Match_columns 452
No_of_seqs 323 out of 2079
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0173 AspS Aspartyl-tRNA syn 100.0 2E-143 4E-148 1110.0 41.2 437 1-452 88-528 (585)
2 PLN02903 aminoacyl-tRNA ligase 100.0 4E-125 9E-130 1011.1 45.2 448 1-452 145-593 (652)
3 PRK12820 bifunctional aspartyl 100.0 2E-120 3E-125 984.4 43.8 440 2-452 93-546 (706)
4 PRK00476 aspS aspartyl-tRNA sy 100.0 3E-119 7E-124 967.4 44.9 438 1-452 88-530 (588)
5 TIGR00459 aspS_bact aspartyl-t 100.0 6E-118 1E-122 952.1 44.8 436 1-452 86-525 (583)
6 KOG2411 Aspartyl-tRNA syntheta 100.0 5E-116 1E-120 888.8 30.8 443 1-452 120-569 (628)
7 COG0017 AsnS Aspartyl/asparagi 100.0 1.1E-63 2.4E-68 512.1 28.0 298 2-452 83-401 (435)
8 PLN02532 asparagine-tRNA synth 100.0 5.7E-62 1.2E-66 521.3 28.6 304 1-452 183-599 (633)
9 TIGR00458 aspS_arch aspartyl-t 100.0 1.4E-60 3E-65 498.7 31.4 299 3-452 81-394 (428)
10 PTZ00425 asparagine-tRNA ligas 100.0 8.5E-61 1.8E-65 510.0 29.1 303 2-452 158-552 (586)
11 PTZ00401 aspartyl-tRNA synthet 100.0 7.3E-61 1.6E-65 510.8 27.1 346 2-452 152-516 (550)
12 PRK05159 aspC aspartyl-tRNA sy 100.0 8.9E-60 1.9E-64 494.2 32.5 303 3-452 84-403 (437)
13 PF00152 tRNA-synt_2: tRNA syn 100.0 1.2E-61 2.6E-66 492.6 17.6 288 38-451 1-304 (335)
14 PLN02850 aspartate-tRNA ligase 100.0 3.1E-59 6.6E-64 497.8 29.4 308 2-452 155-496 (530)
15 TIGR00457 asnS asparaginyl-tRN 100.0 5.3E-59 1.1E-63 489.4 29.1 302 2-451 85-418 (453)
16 PLN02603 asparaginyl-tRNA synt 100.0 5.5E-59 1.2E-63 496.7 27.6 302 4-452 178-531 (565)
17 PRK03932 asnC asparaginyl-tRNA 100.0 2.6E-58 5.7E-63 484.3 28.4 300 3-452 84-416 (450)
18 PLN02221 asparaginyl-tRNA synt 100.0 2.5E-58 5.4E-63 491.7 27.5 306 2-452 120-538 (572)
19 PRK00484 lysS lysyl-tRNA synth 100.0 1.6E-57 3.6E-62 482.1 33.4 318 2-452 120-459 (491)
20 PRK12445 lysyl-tRNA synthetase 100.0 3.7E-56 8.1E-61 472.2 33.5 321 2-452 132-473 (505)
21 TIGR00499 lysS_bact lysyl-tRNA 100.0 7.9E-56 1.7E-60 469.5 32.9 323 2-452 120-464 (496)
22 KOG0556 Aspartyl-tRNA syntheta 100.0 9.7E-57 2.1E-61 447.8 20.1 325 3-452 159-499 (533)
23 cd00777 AspRS_core Asp tRNA sy 100.0 3.8E-55 8.3E-60 434.5 22.3 246 59-452 1-250 (280)
24 PTZ00385 lysyl-tRNA synthetase 100.0 2.7E-53 5.8E-58 456.3 33.5 331 2-452 175-534 (659)
25 PLN02502 lysyl-tRNA synthetase 100.0 5.3E-53 1.2E-57 450.7 31.1 327 2-452 177-521 (553)
26 PRK02983 lysS lysyl-tRNA synth 100.0 1.1E-52 2.3E-57 478.0 32.5 320 2-452 718-1063(1094)
27 cd00776 AsxRS_core Asx tRNA sy 100.0 8.3E-53 1.8E-57 425.7 25.3 271 37-452 2-292 (322)
28 PTZ00417 lysine-tRNA ligase; P 100.0 1.3E-51 2.9E-56 441.6 33.2 324 2-452 202-553 (585)
29 KOG0554 Asparaginyl-tRNA synth 100.0 4.6E-53 1E-57 421.6 18.5 298 3-451 83-411 (446)
30 PRK06462 asparagine synthetase 100.0 2.1E-50 4.6E-55 410.0 24.5 270 37-452 8-301 (335)
31 cd00775 LysRS_core Lys_tRNA sy 100.0 1E-48 2.2E-53 396.9 29.4 278 52-452 1-299 (329)
32 cd00669 Asp_Lys_Asn_RS_core As 100.0 3.8E-49 8.3E-54 389.5 24.5 224 59-452 1-239 (269)
33 TIGR00462 genX lysyl-tRNA synt 100.0 5.2E-47 1.1E-51 380.5 25.1 267 59-452 1-279 (304)
34 KOG0555 Asparaginyl-tRNA synth 100.0 3.9E-45 8.4E-50 363.6 19.3 302 2-450 191-510 (545)
35 PRK09350 poxB regulator PoxA; 100.0 2.2E-43 4.7E-48 354.7 26.3 270 56-452 2-284 (306)
36 COG1190 LysU Lysyl-tRNA synthe 100.0 1.3E-43 2.7E-48 366.1 23.7 322 2-451 128-469 (502)
37 KOG1885 Lysyl-tRNA synthetase 100.0 6.2E-37 1.4E-41 310.7 14.2 198 2-207 173-390 (560)
38 COG2269 Truncated, possibly in 100.0 1E-30 2.2E-35 252.7 13.5 205 57-276 14-243 (322)
39 PRK04028 glutamyl-tRNA(Gln) am 99.7 2.6E-16 5.6E-21 170.2 12.1 138 191-345 262-405 (630)
40 PF02938 GAD: GAD domain; Int 99.6 2E-15 4.4E-20 126.9 4.6 95 230-329 1-95 (95)
41 PRK09537 pylS pyrolysyl-tRNA s 99.2 4.5E-11 9.7E-16 124.3 11.8 133 37-175 180-331 (417)
42 cd00768 class_II_aaRS-like_cor 99.1 3.6E-10 7.7E-15 105.9 8.1 112 62-175 2-130 (211)
43 TIGR00134 gatE_arch glutamyl-t 98.9 7.4E-09 1.6E-13 112.7 10.6 128 192-339 260-392 (620)
44 TIGR02367 PylS pyrrolysyl-tRNA 98.8 4.4E-08 9.5E-13 102.2 12.5 114 60-175 240-367 (453)
45 PF00587 tRNA-synt_2b: tRNA sy 98.7 1.3E-07 2.8E-12 87.4 9.8 115 61-178 1-135 (173)
46 PRK00488 pheS phenylalanyl-tRN 98.6 1.7E-07 3.7E-12 95.4 11.2 116 63-179 111-238 (339)
47 PF01409 tRNA-synt_2d: tRNA sy 98.5 4.4E-07 9.6E-12 89.1 10.3 115 63-179 20-155 (247)
48 cd00496 PheRS_alpha_core Pheny 98.5 1.5E-06 3.3E-11 83.6 12.1 112 64-177 5-131 (218)
49 COG0016 PheS Phenylalanyl-tRNA 98.5 6.9E-07 1.5E-11 90.6 10.1 116 63-179 114-245 (335)
50 cd00773 HisRS-like_core Class 98.5 2.3E-06 4.9E-11 84.4 13.1 100 59-161 2-115 (261)
51 cd00670 Gly_His_Pro_Ser_Thr_tR 98.4 1.7E-06 3.7E-11 83.2 11.0 102 60-162 3-125 (235)
52 PTZ00326 phenylalanyl-tRNA syn 98.4 1.3E-06 2.7E-11 93.1 10.9 49 128-176 357-407 (494)
53 cd00772 ProRS_core Prolyl-tRNA 98.3 5.9E-06 1.3E-10 81.9 13.0 114 59-175 32-169 (264)
54 cd00779 ProRS_core_prok Prolyl 98.3 2.3E-06 5E-11 84.3 9.5 115 58-175 30-163 (255)
55 TIGR00442 hisS histidyl-tRNA s 98.3 5E-06 1.1E-10 86.7 12.2 104 56-162 11-131 (397)
56 PLN02788 phenylalanine-tRNA sy 98.3 4.3E-06 9.3E-11 87.1 10.5 114 63-179 71-212 (402)
57 cd04317 EcAspRS_like_N EcAspRS 98.3 9.9E-07 2.1E-11 78.6 5.0 48 2-54 87-134 (135)
58 PRK00037 hisS histidyl-tRNA sy 98.3 7.7E-06 1.7E-10 85.6 12.3 106 55-162 14-132 (412)
59 TIGR00468 pheS phenylalanyl-tR 98.3 8.3E-06 1.8E-10 82.1 11.9 117 61-178 73-202 (294)
60 PLN02853 Probable phenylalanyl 98.3 5.6E-06 1.2E-10 87.9 11.0 50 128-177 342-393 (492)
61 cd00778 ProRS_core_arch_euk Pr 98.2 3.4E-06 7.4E-11 83.4 8.0 116 58-175 31-169 (261)
62 PRK09194 prolyl-tRNA synthetas 98.2 1.3E-05 2.8E-10 87.6 12.9 122 56-180 44-187 (565)
63 cd00771 ThrRS_core Threonyl-tR 98.2 1.3E-05 2.8E-10 80.8 11.5 112 59-174 30-160 (298)
64 TIGR00409 proS_fam_II prolyl-t 98.2 2.2E-05 4.8E-10 85.8 13.4 123 56-181 44-188 (568)
65 PRK04172 pheS phenylalanyl-tRN 98.1 2E-05 4.3E-10 84.7 12.2 122 55-177 228-401 (489)
66 PRK12444 threonyl-tRNA synthet 98.1 1.9E-05 4.1E-10 87.5 10.6 115 58-177 273-407 (639)
67 CHL00201 syh histidine-tRNA sy 98.1 4.2E-05 9E-10 81.0 12.7 105 55-161 14-135 (430)
68 PRK12292 hisZ ATP phosphoribos 98.0 4.3E-05 9.3E-10 79.9 11.8 105 55-161 13-131 (391)
69 PRK14799 thrS threonyl-tRNA sy 98.0 3.2E-05 6.9E-10 84.1 10.9 119 57-179 166-303 (545)
70 PRK12421 ATP phosphoribosyltra 98.0 6.3E-05 1.4E-09 78.7 12.8 120 54-175 16-152 (392)
71 cd00774 GlyRS-like_core Glycyl 98.0 1.3E-05 2.7E-10 79.1 7.2 97 58-161 31-143 (254)
72 PLN02908 threonyl-tRNA synthet 98.0 3.7E-05 8.1E-10 85.9 11.5 119 56-178 318-455 (686)
73 PRK00413 thrS threonyl-tRNA sy 98.0 4.3E-05 9.3E-10 84.6 11.9 109 55-166 266-393 (638)
74 PF13393 tRNA-synt_His: Histid 98.0 3.9E-05 8.4E-10 77.3 10.6 104 56-162 7-122 (311)
75 TIGR00414 serS seryl-tRNA synt 98.0 3.9E-05 8.4E-10 80.9 10.6 119 57-178 171-308 (418)
76 TIGR00443 hisZ_biosyn_reg ATP 98.0 5.2E-05 1.1E-09 76.9 10.9 104 56-162 5-121 (314)
77 PRK12305 thrS threonyl-tRNA sy 98.0 4E-05 8.7E-10 83.9 10.6 120 56-178 203-341 (575)
78 PRK12293 hisZ ATP phosphoribos 98.0 8.3E-05 1.8E-09 74.5 12.0 106 55-169 15-131 (281)
79 COG0124 HisS Histidyl-tRNA syn 98.0 3.1E-05 6.8E-10 81.6 9.4 106 55-161 14-134 (429)
80 TIGR00418 thrS threonyl-tRNA s 97.9 7.4E-05 1.6E-09 81.6 12.2 115 56-174 197-331 (563)
81 PLN02972 Histidyl-tRNA synthet 97.9 9.2E-05 2E-09 82.6 12.4 121 52-175 334-469 (763)
82 PLN02530 histidine-tRNA ligase 97.9 0.00011 2.3E-09 79.2 12.1 108 52-162 77-198 (487)
83 PRK08661 prolyl-tRNA synthetas 97.9 5.5E-05 1.2E-09 81.1 9.4 115 58-175 43-180 (477)
84 PRK12325 prolyl-tRNA synthetas 97.9 8.5E-05 1.8E-09 78.9 10.7 116 58-175 46-179 (439)
85 PRK12420 histidyl-tRNA synthet 97.8 0.00012 2.6E-09 77.3 11.5 118 55-175 14-150 (423)
86 PRK05431 seryl-tRNA synthetase 97.8 0.0001 2.2E-09 77.9 10.0 118 57-178 168-306 (425)
87 TIGR00408 proS_fam_I prolyl-tR 97.8 7.1E-05 1.5E-09 80.2 8.8 116 59-176 38-176 (472)
88 cd00770 SerRS_core Seryl-tRNA 97.7 9.9E-05 2.2E-09 74.4 8.3 119 57-178 50-187 (297)
89 PRK12295 hisZ ATP phosphoribos 97.7 0.0003 6.5E-09 73.2 11.7 107 63-175 8-131 (373)
90 PLN02837 threonine-tRNA ligase 97.7 0.00021 4.6E-09 78.9 10.6 119 57-178 245-382 (614)
91 cd04322 LysRS_N LysRS_N: N-ter 97.5 9.6E-05 2.1E-09 63.3 3.8 43 2-50 66-108 (108)
92 PRK03991 threonyl-tRNA synthet 97.4 0.00026 5.7E-09 78.0 7.3 120 57-180 225-365 (613)
93 PLN02678 seryl-tRNA synthetase 97.3 0.00059 1.3E-08 72.5 8.0 118 58-177 173-312 (448)
94 KOG2784 Phenylalanyl-tRNA synt 97.2 0.00046 9.9E-09 70.2 5.5 61 114-176 318-383 (483)
95 PLN02320 seryl-tRNA synthetase 97.1 0.001 2.2E-08 71.4 7.4 118 59-179 233-370 (502)
96 PRK04173 glycyl-tRNA synthetas 97.0 0.0017 3.6E-08 69.5 7.3 50 129-179 187-239 (456)
97 PRK12294 hisZ ATP phosphoribos 96.9 0.011 2.5E-07 58.9 12.3 106 56-170 4-119 (272)
98 TIGR00470 sepS O-phosphoseryl- 96.9 0.0029 6.4E-08 66.9 7.7 65 113-177 188-259 (533)
99 cd04319 PhAsnRS_like_N PhAsnRS 96.8 0.0015 3.3E-08 55.4 4.5 37 3-48 67-103 (103)
100 COG0442 ProS Prolyl-tRNA synth 96.7 0.005 1.1E-07 66.2 8.6 114 58-175 46-179 (500)
101 TIGR00469 pheS_mito phenylalan 96.7 0.0096 2.1E-07 63.2 10.0 93 65-160 47-165 (460)
102 COG0172 SerS Seryl-tRNA synthe 96.6 0.011 2.4E-07 62.2 10.2 134 59-197 174-326 (429)
103 TIGR00415 serS_MJ seryl-tRNA s 96.6 0.02 4.3E-07 61.6 11.8 133 58-193 222-401 (520)
104 PRK00960 seryl-tRNA synthetase 96.6 0.0034 7.3E-08 67.8 5.8 119 57-177 221-387 (517)
105 KOG2324 Prolyl-tRNA synthetase 96.1 0.015 3.2E-07 59.5 6.9 140 39-181 28-194 (457)
106 COG3705 HisZ ATP phosphoribosy 95.5 0.024 5.2E-07 59.2 5.9 104 55-161 13-128 (390)
107 PRK09616 pheT phenylalanyl-tRN 95.4 0.12 2.5E-06 56.8 11.4 112 62-175 361-487 (552)
108 COG2511 GatE Archaeal Glu-tRNA 94.8 0.16 3.6E-06 54.4 9.6 115 214-339 281-400 (631)
109 COG0441 ThrS Threonyl-tRNA syn 94.2 0.051 1.1E-06 59.7 4.6 118 59-181 220-357 (589)
110 cd00769 PheRS_beta_core Phenyl 94.2 0.19 4.2E-06 47.4 7.9 107 63-175 3-135 (198)
111 KOG1936 Histidyl-tRNA syntheta 93.8 0.31 6.7E-06 51.2 9.1 115 56-175 71-204 (518)
112 KOG1035 eIF-2alpha kinase GCN2 90.2 1.3 2.8E-05 52.2 9.3 118 55-180 928-1058(1351)
113 cd00645 AsnA Asparagine synthe 89.9 24 0.00052 35.8 18.5 104 76-181 18-135 (309)
114 PTZ00213 asparagine synthetase 89.6 27 0.00059 35.9 19.8 123 59-181 8-146 (348)
115 TIGR00471 pheT_arch phenylalan 87.1 3.3 7.1E-05 45.5 9.7 113 62-175 364-489 (551)
116 PRK05425 asparagine synthetase 87.0 39 0.00084 34.6 20.1 107 73-181 26-146 (327)
117 PLN02734 glycyl-tRNA synthetas 86.6 0.31 6.8E-06 54.4 1.4 69 130-200 277-352 (684)
118 PRK00488 pheS phenylalanyl-tRN 83.1 2.2 4.7E-05 44.1 5.6 99 318-444 215-321 (339)
119 TIGR00469 pheS_mito phenylalan 82.9 0.73 1.6E-05 49.2 2.1 59 365-441 264-325 (460)
120 KOG2509 Seryl-tRNA synthetase 81.6 2.5 5.4E-05 44.7 5.4 114 58-176 184-320 (455)
121 PRK14894 glycyl-tRNA synthetas 80.1 0.98 2.1E-05 48.9 1.8 32 59-90 40-72 (539)
122 PRK07080 hypothetical protein; 77.4 3.9 8.5E-05 41.7 5.1 48 130-178 153-202 (317)
123 COG0423 GRS1 Glycyl-tRNA synth 74.1 1.2 2.7E-05 48.0 0.6 32 59-90 40-72 (558)
124 PLN02265 probable phenylalanyl 72.7 18 0.0004 40.2 9.4 112 62-175 399-526 (597)
125 TIGR00389 glyS_dimeric glycyl- 71.8 0.9 2E-05 49.8 -1.1 32 59-90 37-68 (551)
126 COG0016 PheS Phenylalanyl-tRNA 64.8 12 0.00027 38.5 5.5 90 317-444 221-318 (335)
127 PF03590 AsnA: Aspartate-ammon 53.9 2.3E+02 0.0049 28.0 11.7 119 63-181 7-142 (244)
128 CHL00192 syfB phenylalanyl-tRN 52.8 60 0.0013 36.9 8.9 109 62-175 400-528 (704)
129 KOG1637 Threonyl-tRNA syntheta 52.4 22 0.00047 38.2 4.9 110 59-175 192-323 (560)
130 PRK00629 pheT phenylalanyl-tRN 50.6 68 0.0015 37.0 9.0 109 62-176 489-621 (791)
131 TIGR00472 pheT_bact phenylalan 49.4 51 0.0011 38.0 7.8 105 67-176 498-628 (798)
132 TIGR00669 asnA aspartate--ammo 47.2 3.2E+02 0.0069 28.2 12.0 122 59-180 5-143 (330)
133 COG2502 AsnA Asparagine synthe 42.7 3.2E+02 0.007 27.5 10.8 140 63-202 13-177 (330)
134 KOG2298 Glycyl-tRNA synthetase 36.5 7.2 0.00016 41.8 -1.5 33 59-91 46-78 (599)
135 PF01409 tRNA-synt_2d: tRNA sy 36.3 15 0.00032 36.3 0.7 80 318-435 132-217 (247)
136 PRK05441 murQ N-acetylmuramic 36.2 2.2E+02 0.0048 28.7 9.2 83 303-423 123-208 (299)
137 TIGR00468 pheS phenylalanyl-tR 34.5 28 0.00061 35.1 2.4 58 369-444 210-274 (294)
138 COG0072 PheT Phenylalanyl-tRNA 33.2 99 0.0021 34.9 6.6 136 37-177 322-487 (650)
139 TIGR00274 N-acetylmuramic acid 32.4 2.7E+02 0.0059 28.1 9.1 46 304-358 119-164 (291)
140 PLN02788 phenylalanine-tRNA sy 32.1 32 0.00068 36.5 2.3 52 368-439 218-272 (402)
141 cd05007 SIS_Etherase N-acetylm 32.1 3.1E+02 0.0066 27.0 9.2 83 303-423 110-195 (257)
142 PF15513 DUF4651: Domain of un 31.5 57 0.0012 25.4 3.0 23 60-83 2-24 (62)
143 PF14544 DUF4443: Domain of un 31.5 1.9E+02 0.0041 25.1 6.5 56 263-323 31-89 (108)
144 cd00673 AlaRS_core Alanyl-tRNA 30.8 93 0.002 30.5 5.1 97 63-175 2-108 (232)
145 smart00769 WHy Water Stress an 30.5 34 0.00074 28.4 1.9 23 387-409 31-53 (100)
146 PF08250 Sperm_act_pep: Sperm- 29.0 23 0.0005 17.7 0.3 9 400-408 1-9 (10)
147 PLN02853 Probable phenylalanyl 28.6 1.1E+02 0.0024 33.4 5.7 47 366-429 398-446 (492)
148 PRK06253 O-phosphoseryl-tRNA s 27.1 84 0.0018 34.4 4.5 47 130-176 210-259 (529)
149 PRK12570 N-acetylmuramic acid- 26.5 3.9E+02 0.0084 27.0 9.0 46 303-357 119-164 (296)
150 COG0423 GRS1 Glycyl-tRNA synth 26.1 62 0.0013 35.5 3.3 31 130-160 189-222 (558)
151 KOG0554 Asparaginyl-tRNA synth 26.0 31 0.00066 36.4 1.0 22 236-257 334-355 (446)
152 PTZ00417 lysine-tRNA ligase; P 25.6 60 0.0013 36.2 3.2 69 180-255 411-483 (585)
153 cd00768 class_II_aaRS-like_cor 24.4 55 0.0012 30.0 2.3 22 391-412 154-180 (211)
154 TIGR01884 cas_HTH CRISPR locus 21.3 2.8E+02 0.006 26.1 6.5 52 306-357 19-72 (203)
155 TIGR00389 glyS_dimeric glycyl- 20.1 98 0.0021 34.3 3.5 30 130-159 185-217 (551)
No 1
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-143 Score=1110.05 Aligned_cols=437 Identities=53% Similarity=0.907 Sum_probs=423.1
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
|+||+|||++++|+|||.| .++||++.+.. +++|++||+|||||||++.|+.++++||+++.++|+||.+ +||+
T Consensus 88 l~TGeiEv~a~~i~vln~s-~~lPf~i~d~~----~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~ld~-~gF~ 161 (585)
T COG0173 88 LPTGEIEVLAEEIEVLNAS-KTLPFQIEDET----NASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDD-QGFL 161 (585)
T ss_pred CCcceEEEEeeeEEEEecC-CCCCcCCCCCC----CcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhh-cCCe
Confidence 6899999999999999998 58999997642 6899999999999999999999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|++|||||||+|+||+|.++|+||+||||||+|||+||++|++|||||+|||||||+|+||||||||||+||||
T Consensus 162 EiETPiLtkSTPEGARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF 241 (585)
T COG0173 162 EIETPILTKSTPEGARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSF 241 (585)
T ss_pred EeecCccccCCCccccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeE
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v 240 (452)
++.+|||+++|+|++++|+++.|++++.||+||||+|||++|||||||+||++++.|+++++.+++|++|.+.+..++.|
T Consensus 242 ~~~edv~~~~E~l~~~vf~~~~~i~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v 321 (585)
T COG0173 242 VDEEDVMELIEKLLRYVFKEVKGIELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRV 321 (585)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCccCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcC
Q 043787 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVG 320 (452)
Q Consensus 241 ~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~ 320 (452)
+++.+|++ ..+||++++ ++.++++.+||+||+|+++.++| + .||++|+++++..++|.+++++++||+|||+||
T Consensus 322 ~ai~vp~~-~~~sRk~id--~~~~~ak~~gakGLa~ikv~~~~-~--~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~ 395 (585)
T COG0173 322 KAIVVPGG-ASLSRKQID--ELTEFAKIYGAKGLAYIKVEEDG-L--KGPIAKFLSEEILEELIERLGAEDGDIIFFVAD 395 (585)
T ss_pred EEEEcCCc-cccCHHHHH--HHHHHHHHcCCCceEEEEEecCC-c--cchHHHhcCHHHHHHHHHHhCCCCCCEEEEecC
Confidence 99999998 579999997 46789999999999999999887 4 689999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc----Chhhhhhceeee
Q 043787 321 HPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD----DLSSARALAYDM 396 (452)
Q Consensus 321 ~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~----~~~~v~a~~YDL 396 (452)
+..+++++||+||+.++++++|++++.|+||||||||||||+|+++||.|+|||||||+++|.+ +|++++|.+|||
T Consensus 396 ~~~~~~~~lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDl 475 (585)
T COG0173 396 KKKVVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDL 475 (585)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCcccceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccE
Confidence 9999999999999999999999999999999999999999999999999999999999999987 578899999999
Q ss_pred eecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 397 VYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 397 VlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
||||+||||||||||++++|++||++||+++++++.+|||||+|++|| +|||-
T Consensus 476 VlNG~ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yG---aPPHg 528 (585)
T COG0173 476 VLNGYELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYG---APPHG 528 (585)
T ss_pred EeccEeeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CCCCc
Confidence 999999999999999999999999999999999999999999999999 99993
No 2
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.3e-125 Score=1011.13 Aligned_cols=448 Identities=76% Similarity=1.199 Sum_probs=415.6
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++||++||.+++|+|||+|..++||.+.+..+.....++++|++|||||||++.++++|++||++++++|+||.+++||+
T Consensus 145 ~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~iR~fl~~~~gFi 224 (652)
T PLN02903 145 MKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFV 224 (652)
T ss_pred CCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHHHHHHHhcCCeE
Confidence 46899999999999999986689998764221112478999999999999999999999999999999999997338999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|++++||||++|++|++..+|.+|||+||||+|||+||++|++||||||||||||+++++||||||||||||+|
T Consensus 225 EVeTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf 304 (652)
T PLN02903 225 EIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAF 304 (652)
T ss_pred EEECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcccceeeeeeeecC
Confidence 99999999999999999999998778999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeE
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v 240 (452)
++++|+|+++|+||+++++++++++++.||+||||+|||++||+||||+||++++.|+++++.+++|.+|...+++++.|
T Consensus 305 ~d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~~~~~~~f~~f~~~~~~~~~v 384 (652)
T PLN02903 305 TPLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVFAGALESGGVV 384 (652)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHHhhcCCCchhhhhhhccCCeE
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999988889999
Q ss_pred EEEEccCCCcccchhhhcc-CcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEc
Q 043787 241 KVLCVPSGAKTYSNTALKK-GDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAV 319 (452)
Q Consensus 241 ~~~~~p~~~~~~s~~~~~~-~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a 319 (452)
.++++|++.+ +++++++. ++.++...+.|++|++|+++.++|++.+.+++.|+++++..++|.+.+++++||+|||+|
T Consensus 385 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~~~GD~~~~~a 463 (652)
T PLN02903 385 KAICVPDGKK-ISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALVESLSPEQAEQLLAACGAGPGDLILFAA 463 (652)
T ss_pred EEEEeCCCCc-cchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchhhcCCHHHHHHHHHHhCCCCCcEEEEEC
Confidence 9999998654 88877733 234554444599999999997776554334899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeec
Q 043787 320 GHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYN 399 (452)
Q Consensus 320 ~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlN 399 (452)
|+...++++||+||+++|+.++|++++.|+|||||||||||||++++||+|+|||||||+++|++++.+++|+|||||||
T Consensus 464 ~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~~d~~~l~~~~a~~YDLVlN 543 (652)
T PLN02903 464 GPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVYN 543 (652)
T ss_pred CcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCceEecCCCCCCCCCcchhhhhhhhhhcceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 400 GVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 400 G~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
|+|||||||||||+++|+++|+.+|+++++++.+|+|||+||+|| ||||-
T Consensus 544 G~EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG---~Pphg 593 (652)
T PLN02903 544 GVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMG---APPHG 593 (652)
T ss_pred ceeeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CCCCC
Confidence 999999999999999999999999999999999999999999999 99993
No 3
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=1.5e-120 Score=984.37 Aligned_cols=440 Identities=44% Similarity=0.766 Sum_probs=407.3
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccc-------cCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHh
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADD-------AKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLE 74 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~-------~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~ 74 (452)
+||++||.+++++|||+|. ++||.+.+... ....+++++|++|||||||++.++++|++||++++++|+||.
T Consensus 93 ~tg~iEl~~~~i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~fl~ 171 (706)
T PRK12820 93 ETGDIEVFVRELSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLD 171 (706)
T ss_pred CCCcEEEEeeEEEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999984 78887654210 001357999999999999999999999999999999999999
Q ss_pred hcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeee
Q 043787 75 DVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQL 154 (452)
Q Consensus 75 ~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqL 154 (452)
+ +||+||+||+|++++||||++|++|++..++.+|+|+||||+|||+||++|++||||||||||||+++++||||||||
T Consensus 172 ~-~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~L 250 (706)
T PRK12820 172 S-RGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQL 250 (706)
T ss_pred H-CCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCcccccc
Confidence 8 999999999999999999999999988778899999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccc
Q 043787 155 DMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSL 234 (452)
Q Consensus 155 e~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i 234 (452)
||||+|++++++|+++|+||+++|+ ..+++++.||+||||.|||++||+||||+||++++.|+++++.+++|.+|...+
T Consensus 251 E~E~af~d~~dvm~l~E~li~~v~~-~~~~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~ 329 (706)
T PRK12820 251 DIEASFIDEEFIFELIEELTARMFA-IGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFADATDIFENTRYGIFKQIL 329 (706)
T ss_pred ceeeccCCHHHHHHHHHHHHHHHHH-hcCcCCCCCceEEEHHHHHHHhCCCCCccccCcEEEEHHHHhccCCchhhhhhh
Confidence 9999999999999999999999996 556788899999999999999999999999999999999999999999999988
Q ss_pred cCCCeEEEEEccCCCcccchhhhccCcch-HHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCc
Q 043787 235 KSGGIIKVLCVPSGAKTYSNTALKKGDIY-NEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSD 313 (452)
Q Consensus 235 ~~~~~v~~~~~p~~~~~~s~~~~~~~~~~-~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd 313 (452)
+.||.|+++++|++...+|+++++. .+. +.++.+|++|++|+++.+++ + .|++.|++++++.++|.+.+++++||
T Consensus 330 ~~~g~v~~i~~~~~~~~~s~~~~~~-~~~~~~~~~~g~~gl~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~~~~gd 405 (706)
T PRK12820 330 QRGGRIKGINIKGQSEKLSKNVLQN-EYAKEIAPSFGAKGMTWMRAEAGG-L--DSNIVQFFSADEKEALKRRFHAEDGD 405 (706)
T ss_pred ccCCeEEEEEeCCCccccCHHHHHH-HHHHHHHHHcCCCceEEEEECCCC-c--CCchhccCCHHHHHHHHHHhCCCCCC
Confidence 8999999999998766699988752 133 67888999999999985543 3 57999999999999999999999999
Q ss_pred EEEEEcCCc-hhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc-----Chh
Q 043787 314 LILFAVGHP-ASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD-----DLS 387 (452)
Q Consensus 314 ~~~~~a~~~-~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~-----~~~ 387 (452)
+|||+|+++ ..++++||+||+++|+.++|++++.|+|+||||||||||+++ |||+|+|||||||+++|++ +|.
T Consensus 406 ~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPlfe~~~e-~~~~a~HHPFT~p~~~d~~~l~~~~p~ 484 (706)
T PRK12820 406 VIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDD-GGVTSSHHPFTAPDREDFDPGDIEELL 484 (706)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCcccCCCC-CCeeeeeCCCCCcCccChhhhccCChH
Confidence 999999976 679999999999999999999999999999999999999997 9999999999999999985 456
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
+|||+||||||||+|||||||||||+++|++||+.+|+++++++.+|||||+||+|| ||||-
T Consensus 485 ~~~~~~YDLV~nG~E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G---~pphg 546 (706)
T PRK12820 485 DLRSRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFA---APPHG 546 (706)
T ss_pred HhhhheeeEEecceeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CCCCC
Confidence 899999999999999999999999999999999999999999999999999999999 99993
No 4
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.5e-119 Score=967.38 Aligned_cols=438 Identities=53% Similarity=0.889 Sum_probs=410.1
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++||++||.|++|+|||+|. ++|+.+.+.. .+++++|++|||||+|++.+++++++||++++++|+||.+ +||+
T Consensus 88 ~~~g~~El~~~~i~il~~a~-~lP~~~~~~~----~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~-~gFi 161 (588)
T PRK00476 88 LPTGEIEVLASELEVLNKSK-TLPFPIDDEE----DVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDD-NGFL 161 (588)
T ss_pred CCCCcEEEEEeEEEEEecCC-CCCCcccccc----cCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 45899999999999999996 8999875422 4689999999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|++++||||++|.+|++..++++|+|+||||+|||+||++|++||||||||||||+++++||||||||||||+|
T Consensus 162 EV~TP~L~~s~~ega~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af 241 (588)
T PRK00476 162 EIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSF 241 (588)
T ss_pred EEECCeeecCCCCCCccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCcccccceeeecC
Confidence 99999999999999999999988778999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeE
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v 240 (452)
++++++|+++|+||+++++.+.+.++..||+||||.|||++||+||||+||++++.|+++++.+++|.+|...++.++.|
T Consensus 242 ~~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~f~vf~~~l~~gg~V 321 (588)
T PRK00476 242 VTQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGAANDGGRV 321 (588)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehhHHHHhccCCchhhhhhhccCCeE
Confidence 99999999999999999999999888899999999999999999999999999999999999999999998888888999
Q ss_pred EEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcC
Q 043787 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVG 320 (452)
Q Consensus 241 ~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~ 320 (452)
+++++|+.....++++++. +.++|+.+|++|++|+++.+++ + .+++++++++++.++|.+.+++++||+|+++|+
T Consensus 322 kaI~vp~~~~~~~rk~id~--L~e~AK~~gakGL~~i~~~~~~-l--~~~~akflsee~~~~L~e~l~~k~GDll~~~A~ 396 (588)
T PRK00476 322 KAIRVPGGAAQLSRKQIDE--LTEFAKIYGAKGLAYIKVNEDG-L--KGPIAKFLSEEELAALLERTGAKDGDLIFFGAD 396 (588)
T ss_pred EEEEecCCCCccchhHHHH--HHHHHHHcCCCceEEEEEcCCC-C--cCchhhcCCHHHHHHHHHHhCCCCCCEEEEECC
Confidence 9999997654233777753 5567888999999999986543 3 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc-----Chhhhhhceee
Q 043787 321 HPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD-----DLSSARALAYD 395 (452)
Q Consensus 321 ~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~-----~~~~v~a~~YD 395 (452)
+...++++||+||+++++.++|++++.|+|+||||||||||++++|||+|+|||||||+++|++ +|.+|+|+|||
T Consensus 397 ~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~d 476 (588)
T PRK00476 397 KAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYD 476 (588)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheee
Confidence 9899999999999999999999998899999999999999999999999999999999999865 56789999999
Q ss_pred eeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 396 MVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 396 LVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
|||||+|||||||||||+++|+++|+++|+++++++.+|+|||+||+|| ||||-
T Consensus 477 lv~ng~E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~pph~ 530 (588)
T PRK00476 477 LVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYG---APPHG 530 (588)
T ss_pred eEEeeeeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CCCCc
Confidence 9999999999999999999999999999999999999999999999999 99993
No 5
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=5.9e-118 Score=952.11 Aligned_cols=436 Identities=51% Similarity=0.857 Sum_probs=411.7
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++||++||.+++++|||+|. ++|+++.+. ..++++|++|||||||++.++++|++||++++++|+||.+ +||+
T Consensus 86 ~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~-----~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ff~~-~gFi 158 (583)
T TIGR00459 86 LDTGEIEILAESITLLNKSK-TPPLIIEKT-----DAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQ-QGFL 158 (583)
T ss_pred CCCCcEEEEEeEEEEeecCC-CCCCccccc-----ccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 36899999999999999984 789887522 4678999999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|++++||||++|.+|++..++.+|+|+||||+|||+||++|++||||||||||||+++++||||||||||||+|
T Consensus 159 EVeTP~L~~s~~eGar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af 238 (583)
T TIGR00459 159 EIETPMLTKSTPEGARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSF 238 (583)
T ss_pred EEECCeeccCCCCCCcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecC
Confidence 99999999999999999999998778899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeE
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v 240 (452)
++++|+|+++|+||+++++++.+++++.||+||||.|||++||+||||+||++++.|+++++.+++|.+|...+.+++.|
T Consensus 239 ~d~~dvm~~~E~li~~v~~~v~~~~~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v 318 (583)
T TIGR00459 239 MTQEDVMELIEKLVSHVFLEVKGIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRV 318 (583)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHCCCCCccccCcccccHHHhhccCCcchhhhhhccCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred EEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcC
Q 043787 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVG 320 (452)
Q Consensus 241 ~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~ 320 (452)
.++++|++...+++++++. +.+.++..|++|++|+++.+++ . .+++.|+++++..++|.+.+++++||+|+++|+
T Consensus 319 ~~i~~~~~~~~~~~~~~~~--l~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~ 393 (583)
T TIGR00459 319 KAIRVPGGWAELSRKSIKE--LRKFAKEYGAKGLAYLKVNEDG-I--NSPIKKFLDEKKGKILLERTDAQNGDILLFGAG 393 (583)
T ss_pred EEEEecCCcCccCHhHHHH--HHHHHHHcCCCcceEEEEcCCc-C--CCchhhhcCHHHHHHHHHHhCCCCCCEEEEecC
Confidence 9999998755688887753 5567888999999999997664 2 478999999988999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc----Chhhhhhceeee
Q 043787 321 HPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD----DLSSARALAYDM 396 (452)
Q Consensus 321 ~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~----~~~~v~a~~YDL 396 (452)
+...++++||+||+++|+.+++++++.++|+||||||||||+ ++|||+|+|||||||+++|++ +|.+|++++|||
T Consensus 394 ~~~~~~~~lG~lr~~l~~~~~l~~~~~~~~~wV~dfPlfe~~-~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDL 472 (583)
T TIGR00459 394 SKKIVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKD-KEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDL 472 (583)
T ss_pred cchhHHHHHHHHHHHHHHHcCCcCCCCceEEEEEeCCCcccc-CCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeE
Confidence 999999999999999999999999999999999999999999 689999999999999999987 678899999999
Q ss_pred eecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 397 VYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 397 VlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
||||+||||||+||||+++|+++|+.||+++++++.+|+|||+||+|| ||||-
T Consensus 473 vlnG~ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG---~PPhg 525 (583)
T TIGR00459 473 VLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYG---TPPHA 525 (583)
T ss_pred EEeceEecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CCCcC
Confidence 999999999999999999999999999999999999999999999999 99993
No 6
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-116 Score=888.83 Aligned_cols=443 Identities=52% Similarity=0.822 Sum_probs=381.9
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
|+||.+|+.+++++++|++...+|+...+........++.+|+++||||||++.||.+||+||.+...||+||.+..||+
T Consensus 120 m~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR~yl~n~~GFv 199 (628)
T KOG2411|consen 120 MKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIRRYLNNRHGFV 199 (628)
T ss_pred ccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhhcCee
Confidence 78999999999999999998899999876432233578999999999999999999999999999999999999877899
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|.+.||+||+||.||+|...|+||+|+||||+|||+||++|++||||||||||||++|+||||||||+|+||||
T Consensus 200 evETPtLFkrTPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF 279 (628)
T KOG2411|consen 200 EVETPTLFKRTPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSF 279 (628)
T ss_pred eccCcchhccCCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEec
Confidence 99999999999999999999999877999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeE
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v 240 (452)
++.+++|+++|++++++|.+.+++.++.||+||||+|||++||+||||+||++++.|+++....+ |......++-+
T Consensus 280 ~~~~dim~liEdll~~~ws~~k~~~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~----~~~~~~~d~l~ 355 (628)
T KOG2411|consen 280 TDQEDIMKLIEDLLRYVWSEDKGIQLPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSESISKS----FEEALLSDGLI 355 (628)
T ss_pred cCHHHHHHHHHHHHHHhchhhcCCCCCCCcccccHHHHHHHhCCCCCcccCCcEecchHHhhhhh----hhhhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999998877443 22222233333
Q ss_pred EEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcC
Q 043787 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVG 320 (452)
Q Consensus 241 ~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~ 320 (452)
....++.+++.++.+..++.+.++.+-+.|.+|+.+++..+.. -.|..++.+.+.+....+|++.+++++||+||+++|
T Consensus 356 ~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~-~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g 434 (628)
T KOG2411|consen 356 SVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDAN-KNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVG 434 (628)
T ss_pred ceEEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccch-hhhhhhchhhccchHHHHHHHHhCCCCCCEEEEecc
Confidence 3333444444455554444445566666789999988865432 124555555544556678999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHc--CCCCCCCccEEEEeccCCCccCcccc-cccccccCcCCCCCCCccC----hhhhhhce
Q 043787 321 HPASVNKTLDRLRTFVAHEL--GLIDNSKHSILWITDFPMFEWNDSEQ-RLEALHHPFTAPNPEDMDD----LSSARALA 393 (452)
Q Consensus 321 ~~~~~~~~LG~lR~~l~~~l--~l~~~~~~~flWV~dFPlfe~~e~~~-r~~a~HHPFT~P~~ed~~~----~~~v~a~~ 393 (452)
....+++.||+||+.+...+ ++++++.+.|+||||||||++.+|.+ ++.|+|||||||+++|+++ ++++|++|
T Consensus 435 ~~~~~~~~LgrlRL~l~~l~~~~l~d~~~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqh 514 (628)
T KOG2411|consen 435 PKVSVNTPLGRLRLVLQDLLVKNLRDKSKFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQH 514 (628)
T ss_pred CCccCCCchHHHHHHHHHHHhccccccccceEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcce
Confidence 99899999999998777655 69999999999999999999777665 9999999999999999984 57899999
Q ss_pred eeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 394 YDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 394 YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
||||+||+|||||||||||+++|++|++.++..+++.+.+ ||||+||.+| ||||-
T Consensus 515 YDlV~NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~-gHLL~ALd~G---aPPHG 569 (628)
T KOG2411|consen 515 YDLVVNGVELGGGSIRIHNPDIQRYVLEDILKIPEDAESK-GHLLNALDMG---APPHG 569 (628)
T ss_pred eeeEEccEeecCceeEecCHHHHHHHHHHHhcCchhhhhH-HHHHHHhhcC---CCCCC
Confidence 9999999999999999999999999998544444444433 8899999999 99993
No 7
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-63 Score=512.09 Aligned_cols=298 Identities=27% Similarity=0.481 Sum_probs=249.6
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCC-CHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFV-KEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~-~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
..|.+||++++|+|+|.+..++|++++. + +.++|+++||||+|++..++++++||.+++++|+||.+ +||+
T Consensus 83 a~~g~El~v~~i~Vl~~a~~~~Pi~~~~-------~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~-~gF~ 154 (435)
T COG0017 83 APQGFELQVEKIEVLGEADPPYPIDKKE-------HSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYE-NGFT 154 (435)
T ss_pred CCCCEEEEEEEEEEeeccCCCCCcCccc-------ccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHh-CCcE
Confidence 4588999999999999995578888752 3 59999999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeec
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~ 159 (452)
||+||+|+++++||+.+.|..+.+ ++.+||+||||||||+++++ ++|||+|||+||+|+++|+|| .||||+|.||+
T Consensus 155 eV~tP~i~~~~~EGg~elF~v~yf--~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Ema 231 (435)
T COG0017 155 EVHTPIITASATEGGGELFKVDYF--DKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMA 231 (435)
T ss_pred EecCceEeccCCCCCceeEEEeec--CcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCCcchhhhHheecceec
Confidence 999999999999999887754442 55688999999999997666 999999999999999999999 89999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC-------------CCCC----CCCceeeHHHHHHHhCCCCCCCccccccccccccc
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKD-------------VQLP----NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIF 222 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~-------------~~l~----~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~ 222 (452)
|++++|+|+++|+||+++++.++. ..++ .||+||||+||+++++...-+. +.|
T Consensus 232 f~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~~~~l~~~~~~pf~ritY~eAieiL~~~~~e~-----~~~----- 301 (435)
T COG0017 232 FADLNDVMDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRITYKEAIEILEEKGFEK-----VEW----- 301 (435)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhcccccCCccEEEHHHHHHHHHhcCCcc-----cCC-----
Confidence 999999999999999999998742 2222 5799999999999986321000 111
Q ss_pred ccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHH
Q 043787 223 LESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQ 302 (452)
Q Consensus 223 ~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~ 302 (452)
..+|+.+..
T Consensus 302 ---------------------------------------------------------------------GdDl~~e~E-- 310 (435)
T COG0017 302 ---------------------------------------------------------------------GDDLGTEHE-- 310 (435)
T ss_pred ---------------------------------------------------------------------CCccCCHHH--
Confidence 112222221
Q ss_pred HHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCC-CC
Q 043787 303 LLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPN-PE 381 (452)
Q Consensus 303 l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~-~e 381 (452)
..|++.++ -.|+||||||.- ..||+|.. ++
T Consensus 311 -------------------------------r~l~e~~~------~~~vfv~~yP~~------------~kpFYm~~~~d 341 (435)
T COG0017 311 -------------------------------RYLGEEYF------KPPVFVTNYPKE------------IKPFYMRPDPD 341 (435)
T ss_pred -------------------------------HHHHHHhC------CCcEEEEeCccc------------ccccccccCCC
Confidence 13445443 237999999974 78997654 44
Q ss_pred CccChhhhhhceeeeeecC-eEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 382 DMDDLSSARALAYDMVYNG-VEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 382 d~~~~~~v~a~~YDLVlNG-~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
+.. .+.||||+++| -||.|||+|||++|+..+-++..|+++++++| |||++||| ||||-
T Consensus 342 ~p~-----~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~w----Yld~~kyG---~~PHa 401 (435)
T COG0017 342 NPG-----TVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEW----YLDLRKYG---MPPHA 401 (435)
T ss_pred CCC-----eEEEEeeecCCceeeecceeccccHHHHHHHHHHcCCChHHhHH----HHHHHHcC---CCCCc
Confidence 323 68899999999 69999999999999999999999999999999 99999999 99993
No 8
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=5.7e-62 Score=521.33 Aligned_cols=304 Identities=18% Similarity=0.314 Sum_probs=246.5
Q ss_pred CCCCceEEEEeEEEEEecCC-CCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCe
Q 043787 1 MKTGFIEVAVEHVQVLNAVR-SKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGF 79 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~-~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF 79 (452)
+++|.+||.|++|+|||++. .++|++.+ ..+.|++++|||||+|++.++++||+||++++++|+||.+ +||
T Consensus 183 ~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k-------~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~-~GF 254 (633)
T PLN02532 183 QGKHVIELEVEKILHIGTVDPEKYPLSKK-------RLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQD-HGF 254 (633)
T ss_pred CCCCcEEEEeeEEEEEecCCCCCCccccc-------cCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH-CCC
Confidence 35899999999999999874 36776543 3567788899999999999999999999999999999998 999
Q ss_pred EEEcCceEeecCCCCCccce-eecc-------------------------------------------------------
Q 043787 80 VEIETPVLSRSTPEGARDYL-VPSR------------------------------------------------------- 103 (452)
Q Consensus 80 ~EV~TPiL~~~~~eGa~~~~-v~~~------------------------------------------------------- 103 (452)
+||+||+|++++||||+++| |.+.
T Consensus 255 iEV~TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (633)
T PLN02532 255 LYVQVPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDL 334 (633)
T ss_pred EEeeCCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccc
Confidence 99999999999999999875 3210
Q ss_pred ----------------------------c---CCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cce
Q 043787 104 ----------------------------V---QPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEF 151 (452)
Q Consensus 104 ----------------------------~---~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EF 151 (452)
+ ..|+.+||+||||||+|++ ++|++|||+||||||||.++|.|| +||
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~-~~gl~rVYeIgP~FRAE~s~T~RHL~EF 413 (633)
T PLN02532 335 RKTNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESY-ACALGNVYTFGPRFRADRIDSARHLAEM 413 (633)
T ss_pred cccccccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHH-HHhcCceEEEccceecCCCCCCcccccc
Confidence 0 1145568999999999995 569999999999999999999898 999
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC----------------------CCCCCCceeeHHHHHHHhCCCCCCC
Q 043787 152 TQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV----------------------QLPNPFPRLTYAEAMSRYGSDRPDT 209 (452)
Q Consensus 152 tqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~----------------------~l~~pf~rity~eA~~~~g~dkpd~ 209 (452)
||||+||+|++++|+|+++|+||+++++.+++. .+..||+||||.||++.+.... ..
T Consensus 414 tmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~-~~ 492 (633)
T PLN02532 414 WMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQAT-DK 492 (633)
T ss_pred cceeeeehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhc-CC
Confidence 999999999999999999999999999877531 1336999999999999874321 00
Q ss_pred cccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccc
Q 043787 210 RFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIP 289 (452)
Q Consensus 210 r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~ 289 (452)
.++..+
T Consensus 493 ~~e~~~-------------------------------------------------------------------------- 498 (633)
T PLN02532 493 KFETKP-------------------------------------------------------------------------- 498 (633)
T ss_pred Cccccc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred cccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHH-cCCCCCCCccEEEEeccCCCccCcccccc
Q 043787 290 ALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHE-LGLIDNSKHSILWITDFPMFEWNDSEQRL 368 (452)
Q Consensus 290 ~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~-l~l~~~~~~~flWV~dFPlfe~~e~~~r~ 368 (452)
.+...|+.+... +|++. ++ .++||+|||.-
T Consensus 499 ~~g~dL~~e~Er---------------------------------~L~~~~~~-------~PvFVtdyP~~--------- 529 (633)
T PLN02532 499 EWGIALTTEHLS---------------------------------YLADEIYK-------KPVIIYNYPKE--------- 529 (633)
T ss_pred ccCCccChHHHH---------------------------------HHHHHHcC-------CCEEEECCChh---------
Confidence 001123322221 33443 23 57999999984
Q ss_pred cccccCcCCCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCC
Q 043787 369 EALHHPFTAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFN 447 (452)
Q Consensus 369 ~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~ 447 (452)
..||+|...+|.. .+.+|||+++|+ ||.|||+|+|+++.....++..|++++.++| ||++|+||
T Consensus 530 ---ikPFY~~~~~d~~-----~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~Gld~e~~ew----YLdlrryG--- 594 (633)
T PLN02532 530 ---LKPFYVRLNDDGK-----TVAAFDLVVPKVGTVITGSQNEERMDILNARIEELGLPREQYEW----YLDLRRHG--- 594 (633)
T ss_pred ---hchhhCCcCCCCC-----ceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHcCCChhhHHH----HHHHHHcC---
Confidence 7899997665533 579999999987 9999999999999999999999999999999 99999999
Q ss_pred CCCCC
Q 043787 448 CQPQT 452 (452)
Q Consensus 448 ~~p~~ 452 (452)
+|||.
T Consensus 595 ~pPHg 599 (633)
T PLN02532 595 TVKHS 599 (633)
T ss_pred CCCCe
Confidence 99993
No 9
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=1.4e-60 Score=498.67 Aligned_cols=299 Identities=30% Similarity=0.541 Sum_probs=248.5
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
+|++||.+++++|||+|..++|+++++. ...+.++|+++||||+|++.+++++++||++++++|+||.+ +||+||
T Consensus 81 ~~~~el~~~~i~vl~~~~~~lP~~~~~~----~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~-~gf~EV 155 (428)
T TIGR00458 81 PGGFEIIPTKIEVINEAKEPLPLDPTEK----VPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAE-EGFIEV 155 (428)
T ss_pred CCcEEEEEeEEEEEecCCCCCCCCcccc----CCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEE
Confidence 5899999999999999977899987643 24678999999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCC
Q 043787 83 ETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT 161 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~ 161 (452)
+||+|++++|||+.+.+..+.. ++.+||+||||+|||+|+++|++||||||||||||+++++|| ||||||||||+|.
T Consensus 156 ~TP~L~~~~~eg~~~~f~v~~~--~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~ 233 (428)
T TIGR00458 156 HTPKLVASATEGGTELFPITYF--EREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFE 233 (428)
T ss_pred eCCceecCCCCCCcceeeeEec--CCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccC
Confidence 9999999999998876643332 455679999999999999999999999999999999999888 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcC----------CCC---CCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 162 PLDDMLRLNEDLIRKIFLEIKD----------VQL---PNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 162 ~~~dlm~~~E~li~~i~~~~~~----------~~l---~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+++++|+++|+||++++..+.+ ..+ ..||+||||.||++.+.... .++.+
T Consensus 234 ~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~l~~~g------~~~~~----------- 296 (428)
T TIGR00458 234 DHHDVMDILEELVVRVFEDVPERCAHQLETLEFKLEKPEGKFVRLTYDEAIEMANAKG------VEIGW----------- 296 (428)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccccccCCCCceEEEHHHHHHHHHHcC------CCCCC-----------
Confidence 9999999999999999986643 222 35899999999998653210 00000
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
| ..++.+.
T Consensus 297 ------------------------------------------------------~---------~~l~~~~--------- 304 (428)
T TIGR00458 297 ------------------------------------------------------G---------EDLSTEA--------- 304 (428)
T ss_pred ------------------------------------------------------c---------cccchHH---------
Confidence 0 0011111
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcC-CCCCCCccChh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFT-APNPEDMDDLS 387 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT-~P~~ed~~~~~ 387 (452)
-..+++.++ .++||+|||.- ..||+ +|++++..
T Consensus 305 ------------------------E~~l~~~~~-------~p~fi~d~P~~------------~~pfy~~~~~~~p~--- 338 (428)
T TIGR00458 305 ------------------------EKALGEEMD-------GLYFITDWPTE------------IRPFYTMPDEDNPE--- 338 (428)
T ss_pred ------------------------HHHHHHHhC-------CCEEEEeCchh------------cCcccccccCCCCC---
Confidence 112333332 57999999974 56895 67776654
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+.+|||.++|.||+|||.|+||++.|++.++..|++++..+| ||+|++|| +|||.
T Consensus 339 --~~~~fdl~~~g~Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~----yl~a~~~G---~pP~~ 394 (428)
T TIGR00458 339 --ISKSFDLMYRDLEISSGAQRIHLHDLLVERIKAKGLNPEGFKD----YLEAFSYG---MPPHA 394 (428)
T ss_pred --EEEEEEEEeCCeEEeeCchhcCCHHHHHHHHHHcCCChHHHHH----HHHHHHCC---CCCcC
Confidence 6899999999999999999999999999999999999998888 99999999 99994
No 10
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=8.5e-61 Score=509.98 Aligned_cols=303 Identities=21% Similarity=0.294 Sum_probs=245.4
Q ss_pred CCCceEEEE-----eEEEEEecCC--CCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHh
Q 043787 2 KTGFIEVAV-----EHVQVLNAVR--SKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLE 74 (452)
Q Consensus 2 ~tg~iEl~~-----~~i~vl~~~~--~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~ 74 (452)
++|.+||.+ .+++|||.+. .+||++.+ .++.++++++||||+|++.++++||+||++..++|+||.
T Consensus 158 ~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k-------~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~ 230 (586)
T PTZ00425 158 LKENVELALKDNSIHNFEIYGENLDPQKYPLSKK-------NHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQ 230 (586)
T ss_pred CCccEEEEEecCCCceEEEEeccCCCCCCCCCCc-------cCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899998 7999999873 25676543 467899999999999999999999999999999999999
Q ss_pred hcCCeEEEcCceEeecCCCCCcc-ceeecccC------------------------------------------------
Q 043787 75 DVHGFVEIETPVLSRSTPEGARD-YLVPSRVQ------------------------------------------------ 105 (452)
Q Consensus 75 ~~~gF~EV~TPiL~~~~~eGa~~-~~v~~~~~------------------------------------------------ 105 (452)
+ +||+||+||+|++++||||++ |.||++..
T Consensus 231 ~-~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 309 (586)
T PTZ00425 231 S-RGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAY 309 (586)
T ss_pred H-CCCEEeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8 999999999999999999999 66776421
Q ss_pred ------------CCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCCCHHHHHHHHHH
Q 043787 106 ------------PGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNED 172 (452)
Q Consensus 106 ------------~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~~~~dlm~~~E~ 172 (452)
-|+..||+||||||+|++ ++|++||||||||||||+++++|| +||||||+||+|++++++|+++|+
T Consensus 310 ~~~~~~~~~~~yF~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~ 388 (586)
T PTZ00425 310 PDQYLIDYKKDFFSKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAES 388 (586)
T ss_pred cccccccccccccCcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHH
Confidence 124557999999999985 688999999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHhcCC--------------C--------CCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccc
Q 043787 173 LIRKIFLEIKDV--------------Q--------LPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVF 230 (452)
Q Consensus 173 li~~i~~~~~~~--------------~--------l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~ 230 (452)
||++++..+++. + +..||+||||+||++.+.... + .++..+
T Consensus 389 li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~-~-~~~~~~--------------- 451 (586)
T PTZ00425 389 YIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYS-D-SFEVPV--------------- 451 (586)
T ss_pred HHHHHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhH-H-hcCCCC---------------
Confidence 999999987541 0 235899999999998864310 0 000000
Q ss_pred cccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCC
Q 043787 231 SDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAG 310 (452)
Q Consensus 231 ~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~ 310 (452)
++...|+.+..
T Consensus 452 -----------------------------------------------------------~~G~dL~~e~E---------- 462 (586)
T PTZ00425 452 -----------------------------------------------------------KWGMDLQSEHE---------- 462 (586)
T ss_pred -----------------------------------------------------------CcccccchHHH----------
Confidence 00011222211
Q ss_pred CCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhh
Q 043787 311 PSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSAR 390 (452)
Q Consensus 311 ~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~ 390 (452)
.++++.+. -.|+||+|||.- ..||+|...+|-. .
T Consensus 463 -----------------------r~L~~~~~------~~PvFItdyP~~------------~kPFY~~~~~d~~-----~ 496 (586)
T PTZ00425 463 -----------------------RFVAEQIF------KKPVIVYNYPKD------------LKAFYMKLNEDQK-----T 496 (586)
T ss_pred -----------------------HHHHHHhc------CCcEEEECCccc------------cCccccCcCCCCC-----e
Confidence 13444431 158999999973 7899886544422 4
Q ss_pred hceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 391 ALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 391 a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
+.+|||+++|+ ||.|||+|+|+++.....++..|++++.++| ||++++|| ||||-
T Consensus 497 v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~w----YLd~rryG---~pPhg 552 (586)
T PTZ00425 497 VAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWW----YRQLRKFG---SHPHA 552 (586)
T ss_pred EEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHH----HHHHhhCC---CCCCc
Confidence 68999999996 9999999999999999999999999999999 99999999 99993
No 11
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.3e-61 Score=510.82 Aligned_cols=346 Identities=23% Similarity=0.355 Sum_probs=250.8
Q ss_pred CCCceEEEEeEEEEEecCCCCCCccccccccc----CCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcC
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDA----KDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVH 77 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~----~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~ 77 (452)
.+|++||++++|+|||+|..++|+++++..+. ...++.++|+++||||||++.+++++++||++++++|+||.+ +
T Consensus 152 ~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~i~~~~R~fl~~-~ 230 (550)
T PTZ00401 152 SHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLID-S 230 (550)
T ss_pred CCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-C
Confidence 47889999999999999977899988653211 113578999999999999999999999999999999999998 9
Q ss_pred CeEEEcCceEeecCCCCC-ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeee
Q 043787 78 GFVEIETPVLSRSTPEGA-RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLD 155 (452)
Q Consensus 78 gF~EV~TPiL~~~~~eGa-~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe 155 (452)
||+||+||+|+++++||+ ..|.+++. +..+||+||||+|||+|+++|++||||||||||+|+++|+|| |||||||
T Consensus 231 gFiEV~TP~L~~~~~egga~~F~v~yf---~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le 307 (550)
T PTZ00401 231 DFCEIHSPKIINAPSEGGANVFKLEYF---NRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLD 307 (550)
T ss_pred CCEEEeCCccccCCCCccccccccccC---CCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhh
Confidence 999999999999988854 55556643 678899999999999999999999999999999999999888 8999999
Q ss_pred eeecCC-CHHHHHHHHHHHHHHHHHHhcCC--CC-----CCCCcee--eHHHHHHHh-CCCCCCCccccccccccccccc
Q 043787 156 MELAFT-PLDDMLRLNEDLIRKIFLEIKDV--QL-----PNPFPRL--TYAEAMSRY-GSDRPDTRFSLQLNDVSDIFLE 224 (452)
Q Consensus 156 ~e~~f~-~~~dlm~~~E~li~~i~~~~~~~--~l-----~~pf~ri--ty~eA~~~~-g~dkpd~r~~~~~~~~~~~~~~ 224 (452)
|||+|. +++++|+++|+|+++++..+.+. ++ ..||..+ +|.+++..+ |.+......... ..+.+...+
T Consensus 308 ~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~l~~~~~~ 386 (550)
T PTZ00401 308 VEMRINEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPT-DKYQARVHN 386 (550)
T ss_pred hhhHhcCCHHHHHHHHHHHHHHHHHHHHccchhhhhhccccccccccccccHHHHHhcCCCcccccccch-HHHHHHHHh
Confidence 999996 89999999999999999877542 11 1345443 444444443 433211000000 000111100
Q ss_pred CccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHH
Q 043787 225 SPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLL 304 (452)
Q Consensus 225 ~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~ 304 (452)
+ +.+...+.|..+ .+..++.|..-+ ++ ..+++.+
T Consensus 387 ---------~--~~~~~rl~y~ea--------------i~lL~~~~~~~~------~~---------~~dl~~~------ 420 (550)
T PTZ00401 387 ---------M--DSRMLRINYMHC--------------IELLNTVLEEKM------AP---------TDDINTT------ 420 (550)
T ss_pred ---------c--CCCcccccHHHH--------------HHHHHHhcccCC------Cc---------ccccCch------
Confidence 0 000001111100 011111110000 00 0122211
Q ss_pred HHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEec-cCCCccCcccccccccccCc-CCCCCCC
Q 043787 305 IRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITD-FPMFEWNDSEQRLEALHHPF-TAPNPED 382 (452)
Q Consensus 305 ~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~d-FPlfe~~e~~~r~~a~HHPF-T~P~~ed 382 (452)
....||++ +...++ .++||+| ||.- ..|| |||.++|
T Consensus 421 --------------------~E~~L~~~---v~~~~~-------~~~fI~d~yP~~------------~rpFY~~~~~~d 458 (550)
T PTZ00401 421 --------------------NEKLLGKL---VKERYG-------TDFFISDRFPSS------------ARPFYTMECKDD 458 (550)
T ss_pred --------------------HHHHHHHH---HHHhcC-------CCEEEECCCChh------------hCchhcCcCCCC
Confidence 22334443 223344 4599998 9974 6898 6898877
Q ss_pred ccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 383 MDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 383 ~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.. .+.+|||.++|.||+|||+|+||++.|.+.++..|++++.++| ||+|++|| ||||.
T Consensus 459 p~-----~s~~fDlf~~G~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~----Yl~a~~~G---~PPhg 516 (550)
T PTZ00401 459 ER-----FTNSYDMFIRGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKE----YVDSFRLG---AWPHG 516 (550)
T ss_pred CC-----EEEEEEEEeCCEEEccchhhcCCHHHHHHHHHHcCCCchhhHH----HHHHHHcC---CCCCc
Confidence 65 7899999999999999999999999999999999999999999 99999999 99993
No 12
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.9e-60 Score=494.16 Aligned_cols=303 Identities=31% Similarity=0.562 Sum_probs=246.6
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
.|++||.+++++|||+|..++|+.+.+.. ..+.++|+++||||+|++.++++|++||++++++|+||.+ +||+||
T Consensus 84 ~~~~el~~~~i~vls~a~~~~P~~~~~~~----~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~-~gf~EV 158 (437)
T PRK05159 84 PGGVEVIPEEIEVLNKAEEPLPLDISGKV----LAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE-NGFTEI 158 (437)
T ss_pred CCCEEEEEeEEEEEeCCCCCCCCCccccc----cCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEE
Confidence 47899999999999999768998765321 3568999999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccce-eecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecC
Q 043787 83 ETPVLSRSTPEGARDYL-VPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF 160 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~~-v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f 160 (452)
+||+|+++++||+.+.+ +.+ .|+.+||+||||+|||+|+++|++||||||||||||+++++|| ||||||||||+|
T Consensus 159 ~TP~L~~~~~eg~~~~f~~~~---~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~ 235 (437)
T PRK05159 159 FTPKIVASGTEGGAELFPIDY---FEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGF 235 (437)
T ss_pred eCCcccccCCCCCcceEeEEe---cCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeee
Confidence 99999999999887644 322 3677899999999999999999999999999999999999888 999999999999
Q ss_pred CC-HHHHHHHHHHHHHHHHHHhc----------CCC---CCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCc
Q 043787 161 TP-LDDMLRLNEDLIRKIFLEIK----------DVQ---LPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESP 226 (452)
Q Consensus 161 ~~-~~dlm~~~E~li~~i~~~~~----------~~~---l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~ 226 (452)
++ ++++|+++|+||+++++.+. +.. ++.||+||||.||++.+.... .++.+.
T Consensus 236 ~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~~~~~~f~rit~~eA~~~l~~~~------~~~~~~-------- 301 (437)
T PRK05159 236 IDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELPVPETPIPRITYDEAIEILKSKG------NEISWG-------- 301 (437)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCCcCCCCceEeEHHHHHHHHHHcC------CCCCCC--------
Confidence 98 99999999999999998663 322 337999999999999873211 000000
Q ss_pred cccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHH
Q 043787 227 FRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIR 306 (452)
Q Consensus 227 f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~ 306 (452)
..++.+....|.
T Consensus 302 ------------------------------------------------------------------~~~~~~~e~~l~-- 313 (437)
T PRK05159 302 ------------------------------------------------------------------DDLDTEGERLLG-- 313 (437)
T ss_pred ------------------------------------------------------------------CCCCcHHHHHHH--
Confidence 001110100010
Q ss_pred hCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccC
Q 043787 307 CSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDD 385 (452)
Q Consensus 307 ~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~ 385 (452)
. .+.+.++ -.|+||+|||.- ..|| ++|++++..
T Consensus 314 ------------------------~---~~~~~~~------~~p~fi~~~P~~------------~~pfy~~~~~~~~~- 347 (437)
T PRK05159 314 ------------------------E---YVKEEYG------SDFYFITDYPSE------------KRPFYTMPDEDDPE- 347 (437)
T ss_pred ------------------------H---HHhhhcC------CceEEEecCchh------------cCcceeeecCCCCC-
Confidence 0 1112222 128999999974 5689 556666543
Q ss_pred hhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 386 LSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 386 ~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+.+|||.++|+||+|||.|+||++.|++.|+..|++++..+| ||+|++|| +|||.
T Consensus 348 ----~~~~fdl~~~g~Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~----yl~a~~~G---~pp~~ 403 (437)
T PRK05159 348 ----ISKSFDLLFRGLEITSGGQRIHRYDMLVESIKEKGLNPESFEF----YLEAFKYG---MPPHG 403 (437)
T ss_pred ----EEEEEEEEECCEEEeeCeEEcCCHHHHHHHHHHcCCCHHHHHH----HHHHHHCC---CCCCC
Confidence 6899999999999999999999999999999999999999988 99999999 99993
No 13
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=1.2e-61 Score=492.63 Aligned_cols=288 Identities=38% Similarity=0.649 Sum_probs=226.6
Q ss_pred CHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCC-Cccceeec--ccCCCceeeecC
Q 043787 38 KEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEG-ARDYLVPS--RVQPGTFYALPQ 114 (452)
Q Consensus 38 ~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eG-a~~~~v~~--~~~~g~~~~L~q 114 (452)
++++|+++||||+|++.+++++++||++++++|+||.+ +||+||+||+|++++++| +..|.+++ ....|+.+||+|
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~-~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDK-RGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHh-CCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 47899999999999999999999999999999999998 999999999999999998 56676762 111356778999
Q ss_pred CHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhc--------CCC
Q 043787 115 SPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK--------DVQ 185 (452)
Q Consensus 115 SpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~--------~~~ 185 (452)
|||+|||+++++|++||||||||||+|++++.|| ||||||||||+|+|++++|+++|+||+++++++. +.+
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~~~~~~ 159 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKELSLNID 159 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCcccccccc
Confidence 9999999999999999999999999999988888 8999999999999999999999999999999886 667
Q ss_pred CCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHH
Q 043787 186 LPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNE 265 (452)
Q Consensus 186 l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~ 265 (452)
++.||+|+||.||+++|++++||++++.++.++.+. .+.++
T Consensus 160 ~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-------------------------------------- 200 (335)
T PF00152_consen 160 LPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEI-EELEF-------------------------------------- 200 (335)
T ss_dssp SSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHH-HHTTH--------------------------------------
T ss_pred ccCCceEeeehHHHHHhhcccccchhHHHHHHHHHH-hcccc--------------------------------------
Confidence 778899999999999999998888765433322211 00000
Q ss_pred HHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCC
Q 043787 266 AIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDN 345 (452)
Q Consensus 266 ~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~ 345 (452)
...+.++... -.+|.+..
T Consensus 201 ------------------------~~~~~l~~~~---------------------------------e~~L~~~~----- 218 (335)
T PF00152_consen 201 ------------------------EVGRLLSEEV---------------------------------EPYLVEKY----- 218 (335)
T ss_dssp ------------------------HCHHHHHHHH---------------------------------HHHHHHHH-----
T ss_pred ------------------------hHHHHHHHHH---------------------------------HHHhhhcc-----
Confidence 0000000000 01222212
Q ss_pred CCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCC
Q 043787 346 SKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGI 425 (452)
Q Consensus 346 ~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~ 425 (452)
...|+||+|||.. .+||+++..++. ...+.+|||++||.||+|||+|+||++.|++.|+..|+
T Consensus 219 -~~~p~fI~~~P~~------------~~pf~~~~~~~~----~~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~r~~~~~~ 281 (335)
T PF00152_consen 219 -FTDPVFITDYPAE------------QSPFYKPPNDDD----PGVAERFDLYIPGGEIANGSQREHDPEELRERFEEQGI 281 (335)
T ss_dssp -SSSEEEEEEEBGG------------GSTTTBBBSSST----TTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHTTH
T ss_pred -cCCcEEEEecccc------------cCcccccccccc----cccccceeEEEeCEEEehHHhhhhHHHHHHHHhhhccc
Confidence 2589999999986 699999987664 13799999999999999999999999999999999999
Q ss_pred CHHH----HhhhhhhhhhhhhcCCCCCCCC
Q 043787 426 SPEQ----FIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 426 ~~~~----~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
++++ .+| ||+|+++| ||||
T Consensus 282 ~~~~~~~~~~~----yl~~~~~G---~pp~ 304 (335)
T PF00152_consen 282 DPEEEMPIDEW----YLEALKYG---MPPH 304 (335)
T ss_dssp HGGGSHHHGHH----HHHHHHTT-----SE
T ss_pred ccccccchhHh----HHHhhhcc---Cccc
Confidence 8888 777 99999999 9998
No 14
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=3.1e-59 Score=497.85 Aligned_cols=308 Identities=30% Similarity=0.472 Sum_probs=242.5
Q ss_pred CCCceEEEEeEEEEEecCCCCCCccccccccc-------------CCCCCHhhhhccceeeecchHHHHHHHHHHHHHHH
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDA-------------KDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKL 68 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~-------------~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~ 68 (452)
.||++||++++|+|||+|..++|+++++.... ...++.++|+++||||||++.+++++|+||.++++
T Consensus 155 ~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaifrirs~i~~~ 234 (530)
T PLN02850 155 TTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNL 234 (530)
T ss_pred CCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHHHHHHHHHHHHHH
Confidence 36789999999999999977899998753210 12356899999999999999999999999999999
Q ss_pred HHHHHhhcCCeEEEcCceEeecCCCCCcc-ceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCC
Q 043787 69 IRRYLEDVHGFVEIETPVLSRSTPEGARD-YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADR 147 (452)
Q Consensus 69 iR~ff~~~~gF~EV~TPiL~~~~~eGa~~-~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r 147 (452)
+|+||.+ +||+||+||+|+++++||+.+ |.+.+ .|+.+||+||||+|||+|+++|++||||||||||||+++++|
T Consensus 235 ~R~fl~~-~gF~EV~TP~L~~~~~egga~~F~v~y---f~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~R 310 (530)
T PLN02850 235 FREFLLS-KGFVEIHTPKLIAGASEGGSAVFRLDY---KGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHR 310 (530)
T ss_pred HHHHHHH-CCcEEEeCCccccCCCccccceeeecc---CCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCc
Confidence 9999998 999999999999999988654 54553 367889999999999999999999999999999999999999
Q ss_pred C-cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcCC---CC--------------CCCCceeeHHHHHHHhCCCCCC
Q 043787 148 Q-PEFTQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKDV---QL--------------PNPFPRLTYAEAMSRYGSDRPD 208 (452)
Q Consensus 148 ~-~EFtqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~~---~l--------------~~pf~rity~eA~~~~g~dkpd 208 (452)
| +|||||||||+|. +++++|+++|+|+++++..+.+. ++ ..+++|+||+||++.+.
T Consensus 311 Hl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~----- 385 (530)
T PLN02850 311 HLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLK----- 385 (530)
T ss_pred cchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHH-----
Confidence 9 8999999999998 79999999999999999776421 00 01222333333333221
Q ss_pred CcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccc
Q 043787 209 TRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGI 288 (452)
Q Consensus 209 ~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~ 288 (452)
+.|.. + +.
T Consensus 386 -----------------------------------------------------------~~g~~------~-~~------ 393 (530)
T PLN02850 386 -----------------------------------------------------------EAGVE------V-DP------ 393 (530)
T ss_pred -----------------------------------------------------------HcCCC------C-CC------
Confidence 11100 0 00
Q ss_pred ccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccc
Q 043787 289 PALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRL 368 (452)
Q Consensus 289 ~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~ 368 (452)
...++. .....||++= .+.++ -.|+||+|||.-
T Consensus 394 ---~~dl~~--------------------------~~E~~Lg~~v---~~~~~------~~~~ii~~yP~~--------- 426 (530)
T PLN02850 394 ---LGDLNT--------------------------ESERKLGQLV---KEKYG------TDFYILHRYPLA--------- 426 (530)
T ss_pred ---CCCcch--------------------------HHHHHHHHHH---HHhcC------CCeEEEECCccc---------
Confidence 011111 1122333321 22333 247889999974
Q ss_pred cccccCc-CCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCC
Q 043787 369 EALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFN 447 (452)
Q Consensus 369 ~a~HHPF-T~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~ 447 (452)
..|| |||.++|.. .+.+|||.++|.||+||++|+||++.|++.++..|++++.++| ||+|++||
T Consensus 427 ---~~pfY~~~~~~d~~-----~~~~fDl~i~G~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~----Yl~a~~~G--- 491 (530)
T PLN02850 427 ---VRPFYTMPCPDDPK-----YSNSFDVFIRGEEIISGAQRVHDPELLEKRAEECGIDVKTIST----YIDSFRYG--- 491 (530)
T ss_pred ---cCchhccccCCCCC-----eEEEEEEEeCCEEEeccceecCCHHHHHHHHHHcCCChHHHHH----HHHHHHcC---
Confidence 7899 788877754 6899999999999999999999999999999999999999999 99999999
Q ss_pred CCCCC
Q 043787 448 CQPQT 452 (452)
Q Consensus 448 ~~p~~ 452 (452)
||||.
T Consensus 492 ~pPhg 496 (530)
T PLN02850 492 APPHG 496 (530)
T ss_pred CCCCc
Confidence 99993
No 15
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=5.3e-59 Score=489.44 Aligned_cols=302 Identities=24% Similarity=0.371 Sum_probs=245.5
Q ss_pred CCCceEEEEeEEEEEecCC-CCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVR-SKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~-~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.+++++|||+|. .++|++.+ ..+.++++++||||+|++.+++++++||+|++++|+||.+ +||+
T Consensus 85 ~~~~~El~~~~i~vl~~~~~~~~P~~~~-------~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~-~gf~ 156 (453)
T TIGR00457 85 KGQPVELQVKKIEVVGEAEPDDYPLQKK-------EHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQE-NGFT 156 (453)
T ss_pred CCCCEEEEEeEEEEEecCCccCCCCCcc-------ccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 4789999999999999985 47888764 3567899999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccce-eeccc------CCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-ccee
Q 043787 81 EIETPVLSRSTPEGARDYL-VPSRV------QPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFT 152 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~-v~~~~------~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFt 152 (452)
||+||+|++++|||+.+.| +++.. ..|+.+||+||||+|||++ ++|++||||||||||||+++++|| ||||
T Consensus 157 eV~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt 235 (453)
T TIGR00457 157 WVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAEKSNTSRHLSEFW 235 (453)
T ss_pred EecCCeEeecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccCCCCCCcCcchhc
Confidence 9999999999999988755 54211 1367778999999999985 689999999999999999999888 8999
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC----------CC------------CCCCceeeHHHHHHHhCCCCCCCc
Q 043787 153 QLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV----------QL------------PNPFPRLTYAEAMSRYGSDRPDTR 210 (452)
Q Consensus 153 qLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~----------~l------------~~pf~rity~eA~~~~g~dkpd~r 210 (452)
|||+||+|++++++|+++|+|++++++.+++. ++ ..||+||||+||++.+.....++.
T Consensus 236 ~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~ 315 (453)
T TIGR00457 236 MIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFE 315 (453)
T ss_pred cceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999876431 11 247999999999987643210000
Q ss_pred ccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccc
Q 043787 211 FSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPA 290 (452)
Q Consensus 211 ~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 290 (452)
. +. .
T Consensus 316 --~--------------------------------~~------------------------------------------~ 319 (453)
T TIGR00457 316 --Y--------------------------------ED------------------------------------------F 319 (453)
T ss_pred --C--------------------------------CC------------------------------------------C
Confidence 0 00 0
Q ss_pred ccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccc
Q 043787 291 LVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEA 370 (452)
Q Consensus 291 ~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a 370 (452)
+...|+.+.. .+|++.++ -.|+||||||.-
T Consensus 320 ~g~~l~~~~e---------------------------------~~L~~~~~------~~p~fIt~~P~~----------- 349 (453)
T TIGR00457 320 WGDDLQTEHE---------------------------------RFLAEEYF------KPPVFVTNYPKD----------- 349 (453)
T ss_pred CCCCCCcHHH---------------------------------HHHHHHhC------CCCEEEECCCcc-----------
Confidence 0011221111 13444433 247999999974
Q ss_pred cccCcCCCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCC
Q 043787 371 LHHPFTAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQ 449 (452)
Q Consensus 371 ~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~ 449 (452)
..||+|...++.. .+.+|||+++|+ ||.|||.|+|+++.+.+.++..|++++.++| ||+|++|| +|
T Consensus 350 -~~pfy~~~~~~~~-----~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~~----Yl~~~~~G---~p 416 (453)
T TIGR00457 350 -IKAFYMKLNDDGK-----TVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNW----YLDLRKYG---SV 416 (453)
T ss_pred -cChhhcccCCCcC-----ceeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHHHHHH----HHHHHHcC---CC
Confidence 6899865434433 689999999997 9999999999999999999999999999999 99999999 99
Q ss_pred CC
Q 043787 450 PQ 451 (452)
Q Consensus 450 p~ 451 (452)
||
T Consensus 417 Ph 418 (453)
T TIGR00457 417 PH 418 (453)
T ss_pred CC
Confidence 99
No 16
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=5.5e-59 Score=496.69 Aligned_cols=302 Identities=21% Similarity=0.314 Sum_probs=245.4
Q ss_pred CceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEc
Q 043787 4 GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIE 83 (452)
Q Consensus 4 g~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~ 83 (452)
|.+||.|++|+|||+|..++|++.+ ..+.++++.++|||+|++.+++++|+||++++++|+||.+ +||+||+
T Consensus 178 ~~~EL~v~~i~vlg~a~~~~Pi~~~-------~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~-~gF~eV~ 249 (565)
T PLN02603 178 QKVELKVSKIVVVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE-NGFVWVS 249 (565)
T ss_pred ccEEEEEeEEEEEECCCCCCCCccc-------ccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 5699999999999999767888764 3567888899999999999999999999999999999998 9999999
Q ss_pred CceEeecCCCCCcc-ceeeccc---------------------------CCCceeeecCCHHHHHHHHhhcCCCceEEEe
Q 043787 84 TPVLSRSTPEGARD-YLVPSRV---------------------------QPGTFYALPQSPQLFKQMLMVSGFDKYYQIA 135 (452)
Q Consensus 84 TPiL~~~~~eGa~~-~~v~~~~---------------------------~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~ 135 (452)
||+|++++||||++ |.|++.. ..|+..||+||||||+|+ +++|++|||+||
T Consensus 250 TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~-~~~~l~rVy~ig 328 (565)
T PLN02603 250 SPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGET-YATALSDVYTFG 328 (565)
T ss_pred CCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHH-HHhcccceEEEe
Confidence 99999999999998 4464310 013445899999999999 578999999999
Q ss_pred eeeecCCCCCCCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC------------C----------CCCCCce
Q 043787 136 RCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV------------Q----------LPNPFPR 192 (452)
Q Consensus 136 ~~FR~E~~~~~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~------------~----------l~~pf~r 192 (452)
||||||+++|+|| +||||||+||+|++++|+|+++|++|+++++.+++. + +..||+|
T Consensus 329 p~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~~~~f~r 408 (565)
T PLN02603 329 PTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVEKNFVQ 408 (565)
T ss_pred cceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhcCCCCCC
Confidence 9999999999999 899999999999999999999999999999987531 0 1358999
Q ss_pred eeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCC
Q 043787 193 LTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAK 272 (452)
Q Consensus 193 ity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~ 272 (452)
|||+||++.+.....+ ++...
T Consensus 409 ity~EAi~iL~~~~~~--~~~~~--------------------------------------------------------- 429 (565)
T PLN02603 409 LSYTDAIELLLKAKKK--FEFPV--------------------------------------------------------- 429 (565)
T ss_pred CCHHHHHHHHHHhccc--cCCCC---------------------------------------------------------
Confidence 9999999876432100 00000
Q ss_pred CccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEE
Q 043787 273 GLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILW 352 (452)
Q Consensus 273 gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flW 352 (452)
.+...|+.+.. .+|++.+. + -.|+|
T Consensus 430 -----------------~~g~dl~~e~E---------------------------------r~L~~~~~--~---~~Pvf 454 (565)
T PLN02603 430 -----------------KWGLDLQSEHE---------------------------------RYITEEAF--G---GRPVI 454 (565)
T ss_pred -----------------CccccccHHHH---------------------------------HHHHHHhc--c---CCCEE
Confidence 00112222221 13344331 0 15899
Q ss_pred EeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHh
Q 043787 353 ITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFI 431 (452)
Q Consensus 353 V~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~ 431 (452)
|+|||.- ..||+|+..+|.. .+.+|||+++|+ ||.|||+|+|+++...+.++..|+++++++
T Consensus 455 VtdyP~~------------ikpFYm~~~~d~~-----~v~~fDLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~ 517 (565)
T PLN02603 455 IRDYPKE------------IKAFYMRENDDGK-----TVAAMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYW 517 (565)
T ss_pred EECCccc------------cCccccccCCCCC-----eeEEEEEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHH
Confidence 9999984 7899998766533 457999999998 999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCCCCCCC
Q 043787 432 FAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 432 ~~f~~~l~a~~~G~~~~~p~~ 452 (452)
| ||++++|| +|||-
T Consensus 518 w----YLdl~r~G---~pPhg 531 (565)
T PLN02603 518 W----YLDLRRYG---SVPHA 531 (565)
T ss_pred H----HHHHHhcc---CCCCc
Confidence 9 99999999 99993
No 17
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.6e-58 Score=484.29 Aligned_cols=300 Identities=23% Similarity=0.392 Sum_probs=244.4
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
+|++||.|++++|||+|..++|++.+ .++.++|+++||||+|++.+++++++||.+++++|+||.+ +||+||
T Consensus 84 ~~~~el~~~~i~vl~~~~~~~p~~~~-------~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~-~gf~EV 155 (450)
T PRK03932 84 GQGYELQATKIEVIGEDPEDYPIQKK-------RHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNE-NGFVWV 155 (450)
T ss_pred CCCEEEEEEEEEEccCCCCCCCCCcc-------ccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEe
Confidence 57899999999999998667898764 3567899999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCcc-ceeecc------cCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeee
Q 043787 83 ETPVLSRSTPEGARD-YLVPSR------VQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQL 154 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~-~~v~~~------~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqL 154 (452)
+||+|++++|||+.+ |.++++ ...|..+||+||||+|||+| ++|++||||||||||||+++++|| ||||||
T Consensus 156 ~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~l 234 (450)
T PRK03932 156 DTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGPTFRAENSNTRRHLAEFWMI 234 (450)
T ss_pred cCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeeeccccCCCCCcccccccccc
Confidence 999999999999877 556542 12467789999999999985 689999999999999999998888 899999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHhcC----------C-----------C-CCCCCceeeHHHHHHHhCCCCCCCccc
Q 043787 155 DMELAFTPLDDMLRLNEDLIRKIFLEIKD----------V-----------Q-LPNPFPRLTYAEAMSRYGSDRPDTRFS 212 (452)
Q Consensus 155 e~e~~f~~~~dlm~~~E~li~~i~~~~~~----------~-----------~-l~~pf~rity~eA~~~~g~dkpd~r~~ 212 (452)
||||+|++++++|+++|+||++++..+++ . + +..||+||||+||++.+.....++.
T Consensus 235 E~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~~~~~-- 312 (450)
T PRK03932 235 EPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFE-- 312 (450)
T ss_pred ceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcCCCcC--
Confidence 99999999999999999999999887653 1 1 3369999999999987532110000
Q ss_pred ccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccccc
Q 043787 213 LQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALV 292 (452)
Q Consensus 213 ~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 292 (452)
. +. .+.
T Consensus 313 ----------------------------------~---~~-------------------------------------~~g 318 (450)
T PRK03932 313 ----------------------------------F---PV-------------------------------------EWG 318 (450)
T ss_pred ----------------------------------C---CC-------------------------------------Ccc
Confidence 0 00 000
Q ss_pred ccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHH-HcCCCCCCCccEEEEeccCCCccCccccccccc
Q 043787 293 SSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAH-ELGLIDNSKHSILWITDFPMFEWNDSEQRLEAL 371 (452)
Q Consensus 293 k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~-~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~ 371 (452)
..++.+.. .++++ .++ .++||+|||.-
T Consensus 319 ~~l~~~~e---------------------------------~~l~~~~~~-------~pvfI~~yP~~------------ 346 (450)
T PRK03932 319 DDLGSEHE---------------------------------RYLAEEHFK-------KPVFVTNYPKD------------ 346 (450)
T ss_pred cccChHHH---------------------------------HHHHHHhcC-------CcEEEECCCcc------------
Confidence 11111111 02222 222 47999999974
Q ss_pred ccCcC-CCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCC
Q 043787 372 HHPFT-APNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQ 449 (452)
Q Consensus 372 HHPFT-~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~ 449 (452)
..||+ +|.+++ . .+.+|||++||+ ||.|||+|+|+++.+.+.++..|+++++++| ||+|++|| +|
T Consensus 347 ~~pfy~~~~~~~-~-----~~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~----yl~~~~~G---~p 413 (450)
T PRK03932 347 IKAFYMRLNPDG-K-----TVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWW----YLDLRRYG---SV 413 (450)
T ss_pred cCcccCcCCCCC-C-----EEEEEEEEcCCCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHH----HHHHHHcC---CC
Confidence 67997 566655 4 689999999998 9999999999999999999999999998888 99999999 99
Q ss_pred CCC
Q 043787 450 PQT 452 (452)
Q Consensus 450 p~~ 452 (452)
||.
T Consensus 414 P~g 416 (450)
T PRK03932 414 PHS 416 (450)
T ss_pred CCC
Confidence 994
No 18
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=2.5e-58 Score=491.73 Aligned_cols=306 Identities=23% Similarity=0.309 Sum_probs=245.3
Q ss_pred CCCceEEEEeEEEEEecCC-CCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVR-SKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~-~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||++++|+|||+|. .++|++.. ..+.++++++||||+|++.++++||+||.+++++|+||.+ +||+
T Consensus 120 ~~~~iEl~v~~i~vl~~a~~~~~Pi~~~-------~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff~~-~gFi 191 (572)
T PLN02221 120 TKQKIELSVEKVIDVGTVDPTKYPLPKT-------KLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQE-HSFL 191 (572)
T ss_pred CCccEEEEEeEEEEEecCCCCCCCCCCC-------cCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 4679999999999999985 36787653 4678888999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccce-eecc--------------------------------------------------------
Q 043787 81 EIETPVLSRSTPEGARDYL-VPSR-------------------------------------------------------- 103 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~-v~~~-------------------------------------------------------- 103 (452)
||+||+|++++||||++.| |.+.
T Consensus 192 EI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (572)
T PLN02221 192 YIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAEL 271 (572)
T ss_pred EEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhh
Confidence 9999999999999999865 4110
Q ss_pred -------------------------------cCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cce
Q 043787 104 -------------------------------VQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEF 151 (452)
Q Consensus 104 -------------------------------~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EF 151 (452)
...|+.+||+||||||||++ ++|++|||+||||||||.++|+|| +||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~-~~~l~rVfeIgP~FRAE~s~T~RHL~EF 350 (572)
T PLN02221 272 KIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETY-ACALSSVYTFGPTFRAENSHTSRHLAEF 350 (572)
T ss_pred hhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHH-HHhcCCeEEEccceecCCCCCCcccccc
Confidence 01255668999999999995 567999999999999999999999 999
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC------------C----------CCCCCceeeHHHHHHHhCCCCCCC
Q 043787 152 TQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV------------Q----------LPNPFPRLTYAEAMSRYGSDRPDT 209 (452)
Q Consensus 152 tqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~------------~----------l~~pf~rity~eA~~~~g~dkpd~ 209 (452)
||||+||+|.|++|+|+++|+||+++++.+++. + +..||+||||.||++.+.....
T Consensus 351 tmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~~-- 428 (572)
T PLN02221 351 WMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVA-- 428 (572)
T ss_pred cceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhhh--
Confidence 999999999999999999999999999876531 1 2368999999999998632100
Q ss_pred cccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccc
Q 043787 210 RFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIP 289 (452)
Q Consensus 210 r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~ 289 (452)
.+.+ +.. . .
T Consensus 429 -~g~~-------------------------------------~~~-~----------------------------~---- 437 (572)
T PLN02221 429 -KGKE-------------------------------------FDN-N----------------------------V---- 437 (572)
T ss_pred -cCCC-------------------------------------CCC-C----------------------------c----
Confidence 0000 000 0 0
Q ss_pred cccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCccccccc
Q 043787 290 ALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLE 369 (452)
Q Consensus 290 ~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~ 369 (452)
.+...|+.+. ...|++.+. -.++||+|||.-
T Consensus 438 ~~G~dl~~e~---------------------------------Er~L~~~~~------~~pvfv~dyP~~---------- 468 (572)
T PLN02221 438 EWGIDLASEH---------------------------------ERYLTEVLF------QKPLIVYNYPKG---------- 468 (572)
T ss_pred chhhhhhHHH---------------------------------HHHHHHHhc------CCcEEEEcCChh----------
Confidence 0001122111 123444321 257999999974
Q ss_pred ccccCcCCCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCC
Q 043787 370 ALHHPFTAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNC 448 (452)
Q Consensus 370 a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~ 448 (452)
..||+|+.++|.. .+.+|||.++|+ ||.|||+|+|+++.....++..|++++.++| ||+|++|| |
T Consensus 469 --~~pfy~~~~~d~~-----~~~~fDLl~~g~~El~~g~~R~~r~e~l~~~~~~~g~~~~~~~~----yLda~~~G---~ 534 (572)
T PLN02221 469 --IKAFYMRLNDDEK-----TVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIEPYEW----YLDLRRYG---T 534 (572)
T ss_pred --hCcccccCCCCCc-----eEEEEEEecCCceEECCHHHHHHHHHHHHHHHHHcCCChhhhHH----HHHHhhCC---C
Confidence 7899987655432 457999999997 9999999999999999999999999999999 99999999 9
Q ss_pred CCCC
Q 043787 449 QPQT 452 (452)
Q Consensus 449 ~p~~ 452 (452)
|||.
T Consensus 535 pPh~ 538 (572)
T PLN02221 535 VKHC 538 (572)
T ss_pred CCCc
Confidence 9994
No 19
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-57 Score=482.09 Aligned_cols=318 Identities=28% Similarity=0.453 Sum_probs=242.9
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.|++++|||+|..++|+.... ..++++|+++|||||| ++.+++++++||++++++|+||.+ +||+
T Consensus 120 ~~ge~el~~~~~~vls~~~~plP~~~~~------~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~-~gF~ 192 (491)
T PRK00484 120 KTGELSVKATELTLLTKSLRPLPDKFHG------LTDVETRYRQRYVDLIVNPESRETFRKRSKIISAIRRFLDN-RGFL 192 (491)
T ss_pred CCCcEEEEEeEEEEEeccCCCCCccccc------ccchhhhccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 5799999999999999997678876532 3578999999999997 899999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCC--ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa--~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++ ++|| ++|.++.+. .+..+||+||||+|+|+||++|++||||||||||||+++++|+||||||||||
T Consensus 193 EVeTPiL~~~-~~Ga~a~pF~t~~~~-~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~ 270 (491)
T PRK00484 193 EVETPMLQPI-AGGAAARPFITHHNA-LDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDTRHNPEFTMLEFYQ 270 (491)
T ss_pred EEECCceecc-CCCccceeeeecccc-CCCceEeccCHHHHHHHHHhccCCcEEEEecceecCCCCCCcCCceEEEEEEE
Confidence 9999999854 6665 466655432 24556799999999999999999999999999999999997779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||+++++.+++ ++++.||+||||.||++.+...++. +.
T Consensus 271 a~~d~~d~m~~~E~li~~i~~~~~~~~~i~~~~~~~~~~~pf~rity~eai~~~~g~~~~--------~~---------- 332 (491)
T PRK00484 271 AYADYNDMMDLTEELIRHLAQAVLGTTKVTYQGTEIDFGPPFKRLTMVDAIKEYTGVDFD--------DM---------- 332 (491)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHhCCceEecCCEeecCCCCceEEEHHHHHHHHhCCCcc--------cC----------
Confidence 9999999999999999999998865 3566899999999999998532110 00
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
+... ....+++.|.+ + ..+ + + ...+
T Consensus 333 ------------------------~~~~-----~~~~~~~~~~~---~----~~~-~----------~---~~~l----- 357 (491)
T PRK00484 333 ------------------------TDEE-----ARALAKELGIE---V----EKS-W----------G---LGKL----- 357 (491)
T ss_pred ------------------------CHHH-----HHHHHHHcCCC---C----CCC-C----------C---HHHH-----
Confidence 0000 00111111110 0 000 0 0 0000
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHH-HHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRT-FVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLS 387 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~-~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~ 387 (452)
+..+=. .+...+ ..++||+|||.- .-||++++++|..
T Consensus 358 --------------------~~~l~~~~ve~~~-------~~P~Fi~dyP~~------------~~pf~k~~~~~~~--- 395 (491)
T PRK00484 358 --------------------INELFEEFVEPKL-------IQPTFITDYPVE------------ISPLAKRHREDPG--- 395 (491)
T ss_pred --------------------HHHHHHHHhhhhc-------CCcEEEECCChH------------HhhhhccCCCCCC---
Confidence 111110 111222 258999999974 6799998877654
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHHH------cCCCHH-HH-hhhhhhhhhhhhcCCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI------VGISPE-QF-IFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~------lg~~~~-~~-~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+.+|||.+||+||++|+.|+||++.|++.|+. .|.++. .+ +| ||+|++|| +|||.
T Consensus 396 --~~~rFdL~i~G~Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~----yl~a~~~G---~PP~g 459 (491)
T PRK00484 396 --LTERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDED----FLRALEYG---MPPTG 459 (491)
T ss_pred --eEEEEEEEECCEEEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHH----HHHHHHCC---CCCCC
Confidence 689999999999999999999999999999953 343332 13 46 99999999 99994
No 20
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-56 Score=472.16 Aligned_cols=321 Identities=25% Similarity=0.455 Sum_probs=244.0
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.|++++|||+|..++|....+ ..+.++|+++||||+| ++..++++++||+|++++|+||.+ +||+
T Consensus 132 ~~gelel~~~~~~llsk~~~plP~~~~~------~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~-~gFi 204 (505)
T PRK12445 132 QTGELSIHCTELRLLTKALRPLPDKFHG------LQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVA-RGFM 204 (505)
T ss_pred CCCcEEEEEeEEEEEecCCCCCCccccc------ccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 5899999999999999997678875532 3578999999999998 699999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCc--cceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGAR--DYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~--~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|++. ++||. +|.++... .+..+||+||||||+|+|+++|++|||+||||||||+++++|+||||||||||
T Consensus 205 EVeTPiL~~~-~gGa~a~pF~t~~~~-~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~ 282 (505)
T PRK12445 205 EVETPMMQVI-PGGASARPFITHHNA-LDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYM 282 (505)
T ss_pred EeeCCeeEec-CCCCcccceeccccc-CCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCCCCCcCcccceeeeee
Confidence 9999999865 56654 56544332 34556799999999999999999999999999999999766669999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++++|+++|+||++++..+++ +++..||+||||.||++.|+.. .|.. ...+
T Consensus 283 a~~d~~d~m~l~E~li~~l~~~~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~~~-~~~~---~~~~----------- 347 (505)
T PRK12445 283 AYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE-TDMA---DLDN----------- 347 (505)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccCCCCceEEEHHHHHHHHhCC-CCcc---ccCC-----------
Confidence 9999999999999999999988764 2556799999999999998531 1110 0000
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
+ . .+...+++.|.+ . +.+ + + .
T Consensus 348 -----------------------~--~-----~~~~~~~~~~~~---~----~~~-~----------~---~-------- 368 (505)
T PRK12445 348 -----------------------F--D-----AAKALAESIGIT---V----EKS-W----------G---L-------- 368 (505)
T ss_pred -----------------------H--H-----HHHHHHHHcCCC---C----CCC-C----------C---H--------
Confidence 0 0 001122221110 0 000 0 0 0
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS 388 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~ 388 (452)
...+..+-.++.+.. + ..|+||+|||.- .-||++++++|..
T Consensus 369 -----------------~~l~~~~~~~~vE~~-l-----~~P~Fv~dyP~~------------~splak~~~~~p~---- 409 (505)
T PRK12445 369 -----------------GRIVTEIFDEVAEAH-L-----IQPTFITEYPAE------------VSPLARRNDVNPE---- 409 (505)
T ss_pred -----------------HHHHHHHHHHHHHhh-c-----CCCEEEECCCch------------hCcccccCCCCCC----
Confidence 011111111222211 1 268999999974 6799988766654
Q ss_pred hhhceeeeeecCeEeeccccccccHHHHHHHHH------HcCCCHHHH--hhhhhhhhhhhhcCCCCCCCCC
Q 043787 389 ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE------IVGISPEQF--IFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 389 v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~------~lg~~~~~~--~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+.+|||.+||.||+||+.|+||++.|+..|+ ..|.++... +| ||+||+|| ||||.
T Consensus 410 -~~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~----yl~al~yG---~PP~g 473 (505)
T PRK12445 410 -ITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDED----YVTALEYG---LPPTA 473 (505)
T ss_pred -ceEEEEEEeCCEEEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHH----HHHHHHcC---CCCCC
Confidence 68999999999999999999999999999996 347665543 56 99999999 99993
No 21
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=7.9e-56 Score=469.48 Aligned_cols=323 Identities=29% Similarity=0.503 Sum_probs=244.7
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.|++++|||+|..++|....+ ..+.++|+++|||||| ++.+++++++||+|++++|+||.+ +||+
T Consensus 120 ~~gelel~~~~i~ilsk~~~plP~k~~~------~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~-~gF~ 192 (496)
T TIGR00499 120 KTGELSVHVTELQILTKALRPLPDKFHG------LTDQETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDD-RGFI 192 (496)
T ss_pred CCCcEEEEeeEEEEEecCCCCCCccccc------cCChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CcCE
Confidence 5799999999999999997677765432 3578999999999999 689999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCC--ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa--~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++. +|| ++|.+..+. .+...||+||||||+|+|+++|++|||+||||||||+++++|+||||||||||
T Consensus 193 EVeTP~L~~~~-gga~a~pF~t~~~~-~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~ 270 (496)
T TIGR00499 193 EVETPMLQVIP-GGANARPFITHHNA-LDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQ 270 (496)
T ss_pred EEeCCeeecCC-CCccceeEEeeccc-CCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCCCCcccchhheeehhh
Confidence 99999998764 455 457665432 35556799999999999999999999999999999999986779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||++++..+.+ ++++.||+||||.||++.|+... +....+..+
T Consensus 271 a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~~~~~~~~~pf~rit~~eai~~~~~~~-----g~~~~~~~~-------- 337 (496)
T TIGR00499 271 AYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKKPFKRITMVEAIKKYDMET-----GIDFDDLKD-------- 337 (496)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccCCCCceEEEHHHHHHHHHHhc-----CCCchhcCC--------
Confidence 9999999999999999999988753 35667999999999999775211 000000000
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
. . .+...+++.|.+ + .+.. . +
T Consensus 338 -----------------------~--~-----~l~~~~~~~~~~---~---~~~~-~----------~------------ 358 (496)
T TIGR00499 338 -----------------------F--E-----TAKALAKKIGIE---V---AEKS-L----------T------------ 358 (496)
T ss_pred -----------------------H--H-----HHHHHHHHcCCC---c---CCCC-C----------C------------
Confidence 0 0 001122222211 0 0000 0 0
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHH-HHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRT-FVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLS 387 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~-~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~ 387 (452)
....|..+-. ++...+ ..|+||+|||.- .-||+++++++..
T Consensus 359 ----------------~~~~l~~~~~~~ve~~l-------~~P~fv~dyP~~------------~splak~~~~~p~--- 400 (496)
T TIGR00499 359 ----------------LGHILNELFEQFLEHTL-------IQPTFITHYPAE------------ISPLAKRNPSNPE--- 400 (496)
T ss_pred ----------------HHHHHHHHHHHHHHhcc-------CCCEEEECCchh------------cCcccccCCCCCC---
Confidence 0011111111 122222 358999999974 5799888877654
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHH------HcCCCHHHH--hhhhhhhhhhhhcCCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE------IVGISPEQF--IFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~------~lg~~~~~~--~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+.+|||.+||+||++|+.|+|||+.|++.|+ ..|.+++.. +| ||+|++|| +|||.
T Consensus 401 --~~~rFeL~i~G~Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~----yl~a~~~G---~PP~g 464 (496)
T TIGR00499 401 --FTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDED----FVEALEYG---MPPTG 464 (496)
T ss_pred --eEEEEEEEeCCeEEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHH----HHHHHHcC---CCCCc
Confidence 68999999999999999999999999999985 467776654 56 99999999 99994
No 22
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-57 Score=447.84 Aligned_cols=325 Identities=28% Similarity=0.450 Sum_probs=251.2
Q ss_pred CCceEEEEeEEEEEecCCCCCCccccccccc-------------CCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHH
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDA-------------KDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLI 69 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~-------------~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~i 69 (452)
++++||++.+|.|+|.+.+.+|++++|.... ...++.++||+||.||||+|..|+++|+++.++.++
T Consensus 159 ~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtptnqAiFriq~gvc~~F 238 (533)
T KOG0556|consen 159 VQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTPTNQAIFRIQAGVCFAF 238 (533)
T ss_pred cceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccccchheeehHHHHHHHH
Confidence 5789999999999999988999998765321 123478999999999999999999999999999999
Q ss_pred HHHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-
Q 043787 70 RRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ- 148 (452)
Q Consensus 70 R~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~- 148 (452)
|+||.. +||+||+||.|..++.||+...|..+++ +...||+|||||||||+++++++|||+|||+||+|+|++.||
T Consensus 239 Re~L~~-kgF~EIhTpKli~asSEGGanvF~v~Yf--k~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhl 315 (533)
T KOG0556|consen 239 REYLRS-KGFVEIHTPKLIGASSEGGANVFRVSYF--KQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHL 315 (533)
T ss_pred HHHHHh-cCcceecccccccccCCCCceeEEEEec--cCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhh
Confidence 999988 9999999999999999987776654443 344579999999999999999999999999999999999999
Q ss_pred cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCcc
Q 043787 149 PEFTQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPF 227 (452)
Q Consensus 149 ~EFtqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f 227 (452)
.||+-||+||+|. +|+++|+++.+++..||+.+.. .|.+-++..+.-.|-- .|
T Consensus 316 tEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~e----------ry~~Eie~Vr~qyp~e----------------~f 369 (533)
T KOG0556|consen 316 TEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRE----------RYAKEIETVRKQYPFE----------------PF 369 (533)
T ss_pred HHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhcCCCc----------------cc
Confidence 8999999999997 8999999999999999987631 2333333333322210 01
Q ss_pred ccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHh
Q 043787 228 RVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRC 307 (452)
Q Consensus 228 ~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~ 307 (452)
+.. .+...+.|+.+. +-.+..|. |.|.. .+|+.
T Consensus 370 kf~-------~~~lrl~~~e~v--------------~mLreaGv---------E~g~~-------dDlsT---------- 402 (533)
T KOG0556|consen 370 KFL-------EPPLRLTFKEGV--------------AMLREAGV---------EMGDE-------DDLST---------- 402 (533)
T ss_pred ccC-------CCceEeehHHHH--------------HHHHHcCc---------ccCCc-------cccCC----------
Confidence 000 011111111110 00111111 11100 11221
Q ss_pred CCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccCh
Q 043787 308 SAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDL 386 (452)
Q Consensus 308 ~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~~ 386 (452)
...+.||+|=+ +.++ -.|.-+.+||+- -.|| |||.+++..
T Consensus 403 ----------------e~Ek~LG~lV~---eky~------tdfyildkyP~a------------vRPFYTmpd~~~p~-- 443 (533)
T KOG0556|consen 403 ----------------ESEKKLGQLVR---EKYD------TDFYILDKYPLA------------VRPFYTMPDPENPR-- 443 (533)
T ss_pred ----------------hhHHHHHHHHH---HHhC------CcEEEEccCccc------------cccccccCCCCCCC--
Confidence 22355676633 3343 578999999984 6889 999988875
Q ss_pred hhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 387 SSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 387 ~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
-++|||+.|.|.||-+|.+||||+++..+-.+..|+|+..+.. |+|+++|| ||||.
T Consensus 444 ---ySnSyD~fmRGeEIlSGAQRIhdpe~L~era~~hGid~~~i~~----YidsFryG---~PPHa 499 (533)
T KOG0556|consen 444 ---YSNSYDFFMRGEEILSGAQRIHDPELLVERAKEHGIDPSKIST----YIDSFRYG---APPHA 499 (533)
T ss_pred ---cccchhheechhhhhccccccCCHHHHHHHHHHcCCCHHHHHH----HHHHhccC---CCCCC
Confidence 6999999999999999999999999999999999999999998 99999999 99994
No 23
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=3.8e-55 Score=434.47 Aligned_cols=246 Identities=60% Similarity=1.069 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeee
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCF 138 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~F 138 (452)
|++||++++++|+||.+ +||+||+||+|+.++++|+++|.+++....+.+|+|+||||+|||+|+++|++|||+|||||
T Consensus 1 l~~Rs~i~~~iR~f~~~-~gfiEV~TP~L~~~~~~g~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDE-QGFVEIETPILTKSTPEGARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHH-CCCEEEeCCeeecCCCCCCCCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 57899999999999998 99999999999999999999988876544577888999999999999999999999999999
Q ss_pred ecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCccccccccc
Q 043787 139 RDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDV 218 (452)
Q Consensus 139 R~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~ 218 (452)
|+|.+++.||+||||+|||++|.|++++|+++|+||++++..+.+..+..||+||||.||++.||.
T Consensus 80 R~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~~~~~p~~rity~eA~~~~~~-------------- 145 (280)
T cd00777 80 RDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGVELTTPFPRMTYAEAMERYGF-------------- 145 (280)
T ss_pred eCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCceeeHHHHHHHhCC--------------
Confidence 999999999999999999999999999999999999999999888777789999999999987541
Q ss_pred ccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChh
Q 043787 219 SDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPS 298 (452)
Q Consensus 219 ~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~ 298 (452)
T Consensus 146 -------------------------------------------------------------------------------- 145 (280)
T cd00777 146 -------------------------------------------------------------------------------- 145 (280)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCC
Q 043787 299 NKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAP 378 (452)
Q Consensus 299 ~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P 378 (452)
++.|++|||+.+++.+.+++...||||+||
T Consensus 146 --------------------------------------------------~~~~~~d~~~~~~~~~~~~~~~~~~pf~~~ 175 (280)
T cd00777 146 --------------------------------------------------KFLWIVDFPLFEWDEEEGRLVSAHHPFTAP 175 (280)
T ss_pred --------------------------------------------------CCccccCCcccCChhHHHHHHHHhCCCcCC
Confidence 012455666555555555666779999998
Q ss_pred CCCCcc----ChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 379 NPEDMD----DLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 379 ~~ed~~----~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.++|.. ++..-.+.+|||++||+||+|||.|+||++.|+..|+..|++++++...+.+||+|++|| ||||.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G---~pP~~ 250 (280)
T cd00777 176 KEEDLDLLEKDPEDARAQAYDLVLNGVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYG---APPHG 250 (280)
T ss_pred CcccchhhhcCCccCeeEEEEEEeCCEEEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCC---CCCCC
Confidence 776532 232246899999999999999999999999999999999999655444444599999999 99993
No 24
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.7e-53 Score=456.32 Aligned_cols=331 Identities=20% Similarity=0.368 Sum_probs=241.2
Q ss_pred CCCceEEEEeEEEEEecCC-CCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCe
Q 043787 2 KTGFIEVAVEHVQVLNAVR-SKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGF 79 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~-~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF 79 (452)
++|++||.|++++|||+|. ..+|+.+.. .+.+...+.++|+++|||||| ++.+++++++||+|+++||+||.+ +||
T Consensus 175 ~~GeleI~~~~i~lLska~~~~~~~~p~~-~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~-~gF 252 (659)
T PTZ00385 175 QRGELSVAASRMLILSPYVCTDQVVCPNL-RGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYFNE-RNF 252 (659)
T ss_pred CCceEEEEeeEEEEechhhhccccCCCCC-ccccccCChhhhcccceeeeecCHHHHHHHHHHHHHHHHHHHHHHH-CCC
Confidence 5799999999999999953 233321110 011234689999999999996 788999999999999999999988 999
Q ss_pred EEEcCceEeecCCC-CCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 80 VEIETPVLSRSTPE-GARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 80 ~EV~TPiL~~~~~e-Ga~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
+||+||+|++++++ ||++|.++++. .+..+||+||||||+|+||++|++||||||||||||+++++|+|||||||||+
T Consensus 253 lEVeTPiL~~~~~ga~a~pF~t~~n~-~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~ 331 (659)
T PTZ00385 253 VEVETPVLHTVASGANAKSFVTHHNA-NAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRSHNPEFTSCEFYA 331 (659)
T ss_pred EEeeCCEeeccCCCCCccceEeeccc-CCCCEEecCChHHHHHHHhhcccCCEEEEeceecCCCCCCCccccccceeeee
Confidence 99999999887666 45777666542 24456799999999999999999999999999999999977779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC-----------------CCCCCCCceeeHHHHHHHh-CCCCCCCccccccccccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD-----------------VQLPNPFPRLTYAEAMSRY-GSDRPDTRFSLQLNDVSD 220 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~-----------------~~l~~pf~rity~eA~~~~-g~dkpd~r~~~~~~~~~~ 220 (452)
+|+|++++|+++|+|+++++..+.+ +++..||+||||.|++..+ |.|-++ ..+
T Consensus 332 a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~---------~~d 402 (659)
T PTZ00385 332 AYHTYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPP---------PNE 402 (659)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCc---------ccc
Confidence 9999999999999999999987642 2344699999966666555 433211 001
Q ss_pred ccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhH
Q 043787 221 IFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300 (452)
Q Consensus 221 ~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~ 300 (452)
+-... .++. ....+++.|..
T Consensus 403 l~~~~------------------------------e~~~--~~~~~~~~gi~---------------------------- 422 (659)
T PTZ00385 403 LNTPK------------------------------GIAY--MSVVMLRYNIP---------------------------- 422 (659)
T ss_pred CCCHH------------------------------HHHH--HHHHHHHcCCC----------------------------
Confidence 00000 0000 00112222210
Q ss_pred HHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCC
Q 043787 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNP 380 (452)
Q Consensus 301 ~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ 380 (452)
..+ ...+|.+...+-+.+ +.+.-..|+||+|||.- --||+++++
T Consensus 423 ----------~~~------------~~~~g~~~~~lfe~~--ve~~l~qPtFI~dyP~e------------~sPLak~~~ 466 (659)
T PTZ00385 423 ----------LPP------------VRTAAKMFEKLIDFF--ITDRVVEPTFVMDHPLF------------MSPLAKEQV 466 (659)
T ss_pred ----------CCc------------ccchhHHHHHHHHHH--HHHhhCCcEEEeCCccc------------cCcccccCC
Confidence 000 001222222222211 00001368999999974 568988887
Q ss_pred CCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHH-----HHcCCCHHHH---hhhhhhhhhhhhcCCCCCCCCC
Q 043787 381 EDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL-----EIVGISPEQF---IFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 381 ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if-----~~lg~~~~~~---~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
+|.. .+..|||.+||.||++|..|+||+..|++.| +.-+.+++.. ++ ||+||+|| ||||.
T Consensus 467 ~dp~-----~teRFELfi~G~EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~Ded----fL~AleyG---mPPtg 534 (659)
T PTZ00385 467 SRPG-----LAERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDET----FLKSLQVG---LPPTA 534 (659)
T ss_pred CCCC-----eEEEEEEEeCCeEeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHH----HHHHHHcC---CCCCC
Confidence 7765 7899999999999999999999999999999 4456666655 55 99999999 99993
No 25
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=5.3e-53 Score=450.74 Aligned_cols=327 Identities=23% Similarity=0.376 Sum_probs=241.4
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.+++|+||++|..++|.... ...+.++|+++||||+| ++..+++|++||+|+++||+||.+ +||+
T Consensus 177 ~~gelel~~~~i~vLs~~l~plP~k~~------~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i~~~iR~fl~~-~gF~ 249 (553)
T PLN02502 177 KKGELSIFPTSFEVLTKCLLMLPDKYH------GLTDQETRYRQRYLDLIANPEVRDIFRTRAKIISYIRRFLDD-RGFL 249 (553)
T ss_pred CCCCEEEEEeEEEEEeccCCCCCcccc------cccchhhhccchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 579999999999999999766776442 23678999999999995 899999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCc--cceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGAR--DYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~--~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++. +||. +|.+... ..+..+||+||||||+|+|+++|++|||+||||||||+++++|+||||||||||
T Consensus 250 EVeTPiL~~~~-gGA~a~pF~t~~n-~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~ 327 (553)
T PLN02502 250 EVETPMLNMIA-GGAAARPFVTHHN-DLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQ 327 (553)
T ss_pred EEECCeeeccC-CCccccceeeecc-cCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCCCccccceeehhhhh
Confidence 99999999764 5653 5554322 235677899999999999999999999999999999999996679999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||++++..+.+ +++..||+|+||.||++.+...+... .+. ..+.
T Consensus 328 a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~~~~p~~rit~~e~l~~~~g~~~~~--~~~---~~~~------- 395 (553)
T PLN02502 328 AYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMISLVEEATGIDFPA--DLK---SDEA------- 395 (553)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcccccccCCccccCCCCceeccHHHHHHHHhCCCCCc--CCC---HHHH-------
Confidence 9999999999999999999988753 35568999999999999985322110 000 0000
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
... +...+++.|.+ + ... .
T Consensus 396 -------------------------~~~-----l~~~~~~~~~~------~-~~~-~----------------------- 414 (553)
T PLN02502 396 -------------------------NAY-----LIAACEKFDVK------C-PPP-Q----------------------- 414 (553)
T ss_pred -------------------------HHH-----HHHHHHHcCCC------C-CCC-C-----------------------
Confidence 000 00111121110 0 000 0
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHH-HHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRT-FVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLS 387 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~-~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~ 387 (452)
.....|..+-. ++...+ ..++||+|||.- .-||++++++|..
T Consensus 415 ---------------~~~~~l~~l~~~~ve~~l-------~~PtFV~dyP~~------------~splak~~~~~p~--- 457 (553)
T PLN02502 415 ---------------TTGRLLNELFEEFLEETL-------VQPTFVLDHPVE------------MSPLAKPHRSKPG--- 457 (553)
T ss_pred ---------------CHhHHHHHHHHHHHHhhc-------CCCEEEECCccc------------cCcccccCCCCCC---
Confidence 00011111111 222223 258999999974 6799999887765
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHHH----cCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI----VGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~----lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+..|||.+||.||++|..++|||..|+..|+. .+...++...--..||+||+|| +|||-
T Consensus 458 --~~erFELfi~G~Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyG---mPP~g 521 (553)
T PLN02502 458 --LTERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYG---LPPTG 521 (553)
T ss_pred --eEEEEEEEeCCeEEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcC---CCCCc
Confidence 789999999999999999999999999999932 2222222110112389999999 99993
No 26
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-52 Score=477.95 Aligned_cols=320 Identities=25% Similarity=0.361 Sum_probs=243.8
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.+++++|+++|..++|.... ...+.++|+++|||||| ++.+++++++||++++++|+||.+ +||+
T Consensus 718 ~~ge~ei~~~~i~ll~k~~~plP~k~~------~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~-~gFl 790 (1094)
T PRK02983 718 RNGTLSLLVTSWRLAGKCLRPLPDKWK------GLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAVRETLVA-RGFL 790 (1094)
T ss_pred CCCCEEEEEeEEEEEeccCcCCCCccc------cCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 579999999999999999766775442 24678999999999996 689999999999999999999998 9999
Q ss_pred EEcCceEeecCCCC-CccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeec
Q 043787 81 EIETPVLSRSTPEG-ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~eG-a~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~ 159 (452)
||+||+|+++.+++ +++|.++.+ ..+..+||+||||+|+|+|+++|++||||||||||||+++++|+|||||||+|++
T Consensus 791 EVeTPiL~~~~gGa~a~pF~t~~~-~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a 869 (1094)
T PRK02983 791 EVETPILQQVHGGANARPFVTHIN-AYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDATHNPEFTLLEAYQA 869 (1094)
T ss_pred EEeCCEeeccCCCcccceeEeeec-CCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCCCCccccccchhhhhh
Confidence 99999999776643 356765433 2355678999999999999999999999999999999999877799999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC---------------CCCCCCCceeeHHHHHHHhCCCCCCCccccccccccccccc
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKD---------------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLE 224 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~---------------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~ 224 (452)
|.|++|+|+++|+||+++++.+.+ +++..||+||||.||++++.....+- ..+
T Consensus 870 ~~dy~d~m~l~E~li~~i~~~v~~~~~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~g~~~~~-----~~~------- 937 (1094)
T PRK02983 870 HADYDTMRDLTRELIQNAAQAAHGAPVVMRPDGDGVLEPVDISGPWPVVTVHDAVSEALGEEIDP-----DTP------- 937 (1094)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCcEEeeCCccccccccccCCCceEEEHHHHHHHHhCCCCCC-----CCC-------
Confidence 999999999999999999988754 23557999999999998764321110 000
Q ss_pred CccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHH
Q 043787 225 SPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLL 304 (452)
Q Consensus 225 ~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~ 304 (452)
... +.+.+++.|. .+ .++ .+. .++.
T Consensus 938 -----------------------------~~~-----l~~~~~~~~i---~~---~~~------------~~~---~~l~ 962 (1094)
T PRK02983 938 -----------------------------LAE-----LRKLCDAAGI---PY---RTD------------WDA---GAVV 962 (1094)
T ss_pred -----------------------------HHH-----HHHHHHHcCC---CC---CCC------------CCH---hHHH
Confidence 000 0111222111 00 000 000 0000
Q ss_pred HHhCCCCCcEEEEEcCCchhHHHHHHHHHHH-HHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCc
Q 043787 305 IRCSAGPSDLILFAVGHPASVNKTLDRLRTF-VAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDM 383 (452)
Q Consensus 305 ~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~-l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~ 383 (452)
..+=.+ +...+ ..|+||+|||.- ..||+|++++|.
T Consensus 963 -------------------------~~l~~~~ve~~~-------~~P~Fv~dyP~~------------~spla~~~~~~p 998 (1094)
T PRK02983 963 -------------------------LELYEHLVEDRT-------TFPTFYTDFPTS------------VSPLTRPHRSDP 998 (1094)
T ss_pred -------------------------HHHHHHHHHhhc-------CCCEEEECCCcc------------cccccccCCCCC
Confidence 011111 12222 368999999974 789999988775
Q ss_pred cChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHH-----cCCCHHHHh---hhhhhhhhhhhcCCCCCCCCC
Q 043787 384 DDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI-----VGISPEQFI---FAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 384 ~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~-----lg~~~~~~~---~~f~~~l~a~~~G~~~~~p~~ 452 (452)
. .+.+|||++||+|||+|..++||+..|++.|+. -+.+++.++ | ||+|++|| ||||-
T Consensus 999 ~-----~~erFdL~i~G~Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~----yl~al~yG---mPP~g 1063 (1094)
T PRK02983 999 G-----LAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDED----FLQALEYA---MPPTG 1063 (1094)
T ss_pred C-----eeEEEEEEECCEEEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHH----HHHHHHcC---CCCCC
Confidence 4 789999999999999999999999999777743 466777663 6 99999999 99993
No 27
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=8.3e-53 Score=425.71 Aligned_cols=271 Identities=28% Similarity=0.514 Sum_probs=220.8
Q ss_pred CCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCH
Q 043787 37 VKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSP 116 (452)
Q Consensus 37 ~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSp 116 (452)
++.++|+++||||+|++..++++++||.+.+++|+||.+ +||+||+||+|+.+++||+.+.+.... .++.+||+|||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~-~gf~eV~TP~l~~~~~e~~~~~f~~~~--~~~~~yL~~Sp 78 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRE-NGFTEVHTPKITSTDTEGGAELFKVSY--FGKPAYLAQSP 78 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEeeCCceecCCCCccCCcccccc--CCCcceecCCH
Confidence 567899999999999999999999999999999999998 999999999999999987665443322 36778899999
Q ss_pred HHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcC-----------
Q 043787 117 QLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKD----------- 183 (452)
Q Consensus 117 Ql~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~----------- 183 (452)
|+|||+|+++ ++||||||||||+|++++.|| ||||||||||+|+ +++++|+++|+||++++..+.+
T Consensus 79 ql~lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~ 157 (322)
T cd00776 79 QLYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQ 157 (322)
T ss_pred HHHHHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhc
Confidence 9999998876 999999999999999998777 9999999999999 9999999999999999975532
Q ss_pred -----CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhc
Q 043787 184 -----VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALK 258 (452)
Q Consensus 184 -----~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~ 258 (452)
..+..||+||||.||++.+....+.. +..
T Consensus 158 ~~~~~~~~~~~~~rit~~eA~~~l~~~~~~~----~~~------------------------------------------ 191 (322)
T cd00776 158 LNRELLKPLEPFPRITYDEAIELLREKGVEE----EVK------------------------------------------ 191 (322)
T ss_pred cCcccccCCCCceEEEHHHHHHHHHHcCCCC----CCC------------------------------------------
Confidence 13357999999999999874321110 000
Q ss_pred cCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHH
Q 043787 259 KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAH 338 (452)
Q Consensus 259 ~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~ 338 (452)
. .+.++.+. -..+++
T Consensus 192 -----------------------~---------~~~l~~~~---------------------------------e~~l~~ 206 (322)
T cd00776 192 -----------------------W---------GEDLSTEH---------------------------------ERLLGE 206 (322)
T ss_pred -----------------------c---------cchhcHHH---------------------------------HHHHHH
Confidence 0 01111111 113333
Q ss_pred HcCCCCCCCccEEEEeccCCCccCcccccccccccCcCC-CCCCCccChhhhhhceeeeeecC-eEeeccccccccHHHH
Q 043787 339 ELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTA-PNPEDMDDLSSARALAYDMVYNG-VEIGGGSLRIYKREVQ 416 (452)
Q Consensus 339 ~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~-P~~ed~~~~~~v~a~~YDLVlNG-~EiGGGSiRIh~~elQ 416 (452)
.++ -.++||+|||.- ..||+| +.+++.. .+.+|||.+|| .||+|||.|+||++.|
T Consensus 207 ~~~------~~p~fi~~~P~~------------~~pfy~~~~~~~~~-----~~~~fdl~~~G~~El~~g~~r~~d~~~l 263 (322)
T cd00776 207 IVK------GDPVFVTDYPKE------------IKPFYMKPDDDNPE-----TVESFDLLMPGVGEIVGGSQRIHDYDEL 263 (322)
T ss_pred HhC------CCcEEEECCccc------------cCCceeeecCCCCC-----eeEEEEEEcCCCeEEeeceeecCCHHHH
Confidence 332 258999999974 578955 5555433 68999999999 8999999999999999
Q ss_pred HHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 417 QKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 417 ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
++.|+..|++++.++| ||+|+++| +|||.
T Consensus 264 ~~r~~~~g~~~~~~~~----yl~a~~~G---~pp~~ 292 (322)
T cd00776 264 EERIKEHGLDPESFEW----YLDLRKYG---MPPHG 292 (322)
T ss_pred HHHHHHcCCChHHHHH----HHHHHHCC---CCCCc
Confidence 9999999999999998 99999999 99994
No 28
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=1.3e-51 Score=441.59 Aligned_cols=324 Identities=22% Similarity=0.407 Sum_probs=240.5
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.++++++||+|..++|... . ..+.++|+++|||||| ++..++++++||+|+++||+||.+ +||+
T Consensus 202 ~~gel~i~~~~i~llsk~l~~lP~~~-g------~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~-rGFl 273 (585)
T PTZ00417 202 KKGELSIFPKETIILSPCLHMLPMKY-G------LKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLND-RGFI 273 (585)
T ss_pred CCceEEEEEEEEEEEecCCCCCCccc-C------CCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCeE
Confidence 47999999999999999977888764 1 2467899999999998 899999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCc--cceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGAR--DYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~--~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++ ++||. +|.++.. ..+..+||++|||||+|+|+++|++||||||||||||+++++|+|||||||||+
T Consensus 274 EVeTPiL~~~-~GGA~a~PF~T~~n-~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ 351 (585)
T PTZ00417 274 EVETPTMNLV-AGGANARPFITHHN-DLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYW 351 (585)
T ss_pred EEeCCeeecc-CCcccceeEEeccc-CCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCCCCCccceeeeeeeee
Confidence 9999999987 45765 4444333 235667899999999999999999999999999999999987779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC-----------------CCCCCCCceeeHHHHHHHhCC-CCCCCccccccccccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD-----------------VQLPNPFPRLTYAEAMSRYGS-DRPDTRFSLQLNDVSD 220 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~-----------------~~l~~pf~rity~eA~~~~g~-dkpd~r~~~~~~~~~~ 220 (452)
+|+|++|+|+++|+||++++..+.+ +++..||+|+||.||++.+.. |-+. .++. .
T Consensus 352 ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~-~~~~----~-- 424 (585)
T PTZ00417 352 AYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQ-PFDS----P-- 424 (585)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhCCCccc-cccc----c--
Confidence 9999999999999999999987753 235579999999999998843 2110 0000 0
Q ss_pred ccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhH
Q 043787 221 IFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300 (452)
Q Consensus 221 ~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~ 300 (452)
-+.. ++...+++.|.+ + ...
T Consensus 425 -------------------------------~~~~-----el~~~l~~~g~~---~----~~~----------------- 444 (585)
T PTZ00417 425 -------------------------------ETIN-----KMINLIKENKIE---M----PNP----------------- 444 (585)
T ss_pred -------------------------------CCHH-----HHHHHHHHcCCC---C----CCC-----------------
Confidence 0000 011122222210 0 000
Q ss_pred HHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHH-HHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCC
Q 043787 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRT-FVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPN 379 (452)
Q Consensus 301 ~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~-~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~ 379 (452)
......++.+=. .+...++ -.|+||+|||.- .-||+..+
T Consensus 445 ----------------------~~~~~~l~~l~e~~vE~~l~------~~PtFI~dyP~~------------~sPLak~~ 484 (585)
T PTZ00417 445 ----------------------PTAAKLLDQLASHFIENKYP------NKPFFIIEHPQI------------MSPLAKYH 484 (585)
T ss_pred ----------------------CCHHHHHHHHHHHHHHHhhC------CCcEEEECCChh------------hCchhhhc
Confidence 000111222211 2223332 148999999974 67897666
Q ss_pred CCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHH------HcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 380 PEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE------IVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 380 ~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~------~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
++|.. .+..|||.+||.||+.|..++||+..|++.|+ ..| +++...+-. .||+|++|| ||||.
T Consensus 485 ~~dp~-----v~eRFELfi~G~EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~De-dfl~AleyG---mPPtg 553 (585)
T PTZ00417 485 RSKPG-----LTERLEMFICGKEVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDA-AFCTSLEYG---LPPTG 553 (585)
T ss_pred CCCCC-----eEEeEEeEECCEEEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHH-HHHHHHHcC---CCCCc
Confidence 55543 68999999999999999999999999998773 234 444433222 279999999 99983
No 29
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-53 Score=421.56 Aligned_cols=298 Identities=24% Similarity=0.358 Sum_probs=249.5
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
.++||+.|++|.++|.++.+||++++ ..+.+.+++..||+.|+..+.+++|+||.+..++++||.+ ++|++|
T Consensus 83 ~q~iel~~eki~~vG~v~~~ypl~Kk-------~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~-~~F~~i 154 (446)
T KOG0554|consen 83 KQQIELNAEKIKVVGTVDESYPLQKK-------KLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQS-HDFTYI 154 (446)
T ss_pred heeeeeeeeEEEEEeecCCCCCCccc-------cCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-cCceEe
Confidence 46899999999999999878998875 4788899999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccce-eeccc-----CCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeee
Q 043787 83 ETPVLSRSTPEGARDYL-VPSRV-----QPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLD 155 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~~-v~~~~-----~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe 155 (452)
.||+||+++||||+|.| |.+.. ..|+..||++|.|||.+. |+++++|||.+|||||+|.+++.|| .||||||
T Consensus 155 ~tPiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~-~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlE 233 (446)
T KOG0554|consen 155 NTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA-MACALSRVYTFGPTFRAENSHTSRHLAEFWMLE 233 (446)
T ss_pred cCcEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceehHHH-HHhhhcceEeeccceecccCCchhHHhhhhhhh
Confidence 99999999999999987 43221 125666899999999999 6899999999999999999999999 8999999
Q ss_pred eeecCCC-HHHHHHHHHHHHHHHHHHhcCC----------------------CCCCCCceeeHHHHHHHhCCCCCCCccc
Q 043787 156 MELAFTP-LDDMLRLNEDLIRKIFLEIKDV----------------------QLPNPFPRLTYAEAMSRYGSDRPDTRFS 212 (452)
Q Consensus 156 ~e~~f~~-~~dlm~~~E~li~~i~~~~~~~----------------------~l~~pf~rity~eA~~~~g~dkpd~r~~ 212 (452)
.|++|++ ++|+|.++|.+++++++.+++. .+..+|.||||.||++.+...+- ..|.
T Consensus 234 aE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t-~~fk 312 (446)
T KOG0554|consen 234 AELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVT-KKFK 312 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhcc-cccc
Confidence 9999996 9999999999999999887642 11245789999999998743321 0011
Q ss_pred ccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccccc
Q 043787 213 LQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALV 292 (452)
Q Consensus 213 ~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 292 (452)
....|.
T Consensus 313 ~~~kwG-------------------------------------------------------------------------- 318 (446)
T KOG0554|consen 313 TPPKWG-------------------------------------------------------------------------- 318 (446)
T ss_pred cCcccc--------------------------------------------------------------------------
Confidence 111111
Q ss_pred ccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccc
Q 043787 293 SSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALH 372 (452)
Q Consensus 293 k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~H 372 (452)
..|+.|. +.+|++.++ -+|++|+|||.- .
T Consensus 319 ~~l~~eh---------------------------------e~yL~~~~~------~~PVfV~dYP~~------------i 347 (446)
T KOG0554|consen 319 IDLSTEH---------------------------------EKYLVEECF------KKPVFVTDYPKG------------I 347 (446)
T ss_pred cccchhh---------------------------------HHHHHHHhc------CCCEEEEecccc------------c
Confidence 1122222 235556554 379999999974 8
Q ss_pred cCcCCCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 373 HPFTAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 373 HPFT~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
+||+|..++|.+ +..|+||+++|+ ||.|||+|..+ .+.++..|+++++++| |||+|||| .+||
T Consensus 348 KpFYMr~n~~~~-----tVaa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~~~~eW----YldLRryG---~vph 411 (446)
T KOG0554|consen 348 KPFYMRLNDDGK-----TVAAFDLLVPGVGELIGGSLREER----KARLKERGLTREELEW----YLDLRRYG---SVPH 411 (446)
T ss_pred cceEEEecCCCC-----eeEEEEeecccchhhcCcccchhh----HHHHHhcCCCccccce----ehhhhhcC---CCCC
Confidence 999999888764 678999999999 99999999999 8889999999999999 99999999 8888
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=2.1e-50 Score=409.97 Aligned_cols=270 Identities=26% Similarity=0.375 Sum_probs=214.2
Q ss_pred CCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCcc-----ceeecccCCCceee
Q 043787 37 VKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARD-----YLVPSRVQPGTFYA 111 (452)
Q Consensus 37 ~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~-----~~v~~~~~~g~~~~ 111 (452)
.+.++|+++|++++|++.+++++++||+|++++|+||.+ +||+||+||+|++++++|++. +.+......|+.+|
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~-~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 86 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDG-RGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYY 86 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEeCCeEecCCCCCCCccccCCccccccccCCCcee
Confidence 467899999999999999999999999999999999998 999999999999998886543 33211112367789
Q ss_pred ecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCC--CCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcC-----
Q 043787 112 LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRA--DRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKD----- 183 (452)
Q Consensus 112 L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~--~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~----- 183 (452)
|+||||+|||++ ++|++||||||||||||++++ .|| |||||||||++|.|++++|+++|+||++++..+.+
T Consensus 87 L~~Spql~k~ll-~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 87 LADSMILHKQLA-LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred eccCHHHHHHHH-HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999985 567999999999999999998 455 99999999999999999999999999999975542
Q ss_pred -----C---CCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchh
Q 043787 184 -----V---QLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNT 255 (452)
Q Consensus 184 -----~---~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~ 255 (452)
. .++.||+||||.||++.+.....+. .+
T Consensus 166 i~~~~~~~~~~~~p~~rit~~eA~~~l~~~~~~~------~~-------------------------------------- 201 (335)
T PRK06462 166 LEFFGRDLPHLKRPFKRITHKEAVEILNEEGCRG------ID-------------------------------------- 201 (335)
T ss_pred HHhcCCccccCCCCCeEEEHHHHHHHHHhcCCCc------ch--------------------------------------
Confidence 1 2347999999999998753211000 00
Q ss_pred hhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHH
Q 043787 256 ALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTF 335 (452)
Q Consensus 256 ~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~ 335 (452)
+ +.++.+.. ..
T Consensus 202 ---------------------------~---------~~l~~~~E---------------------------------~~ 212 (335)
T PRK06462 202 ---------------------------L---------EELGSEGE---------------------------------KS 212 (335)
T ss_pred ---------------------------H---------HHHhHHHH---------------------------------HH
Confidence 0 00000000 02
Q ss_pred HHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCC-CCCCccChhhhhhceeeeeec-Ce-Eeecccccccc
Q 043787 336 VAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAP-NPEDMDDLSSARALAYDMVYN-GV-EIGGGSLRIYK 412 (452)
Q Consensus 336 l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P-~~ed~~~~~~v~a~~YDLVlN-G~-EiGGGSiRIh~ 412 (452)
+.+.++ .++||+|||.- ..||+|. ++++.. .+.+|||.+. |+ ||.|||.|+|+
T Consensus 213 l~~~~~-------~p~fi~~yP~~------------~~pfy~~~~~~~~~-----~~~rFdL~~~~g~gEl~~g~er~~~ 268 (335)
T PRK06462 213 LSEHFE-------EPFWIIDIPKG------------SREFYDREDPERPG-----VLRNYDLLLPEGYGEAVSGGEREYE 268 (335)
T ss_pred HHHHhC-------CCEEEECCChh------------hCCcccccCCCCCC-----EEEEEEEEeeCCCcEEeeeEEEecC
Confidence 223232 57999999973 4689875 344433 5789999993 65 99999999999
Q ss_pred HHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 413 REVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 413 ~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
++.+...++..|++++..+| ||+|++|| +|||.
T Consensus 269 ~~~l~~~~~~~g~~~~~~~~----yl~a~~~G---~pp~~ 301 (335)
T PRK06462 269 YEEIVERIREHGVDPEKYKW----YLEMAKEG---PLPSA 301 (335)
T ss_pred HHHHHHHHHHcCCChHHHHH----HHHHHHCC---CCCCC
Confidence 99999999999999998888 99999999 99994
No 31
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1e-48 Score=396.93 Aligned_cols=278 Identities=24% Similarity=0.377 Sum_probs=204.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCc-cceeecccCCCceeeecCCHHHHHHHHhhcCCCc
Q 043787 52 RQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR-DYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDK 130 (452)
Q Consensus 52 ~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~-~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~r 130 (452)
++.+++++++||++++++|+||.+ +||+||+||+|++++++++. .|.++.. ..++.+||+||||+|+|+||++|++|
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~-~gf~EV~TP~L~~~~~~~~~~~f~~~~~-~~~~~~yL~~Spql~~k~ll~~g~~~ 78 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDD-RGFLEVETPMLQPIAGGAAARPFITHHN-ALDMDLYLRIAPELYLKRLIVGGFER 78 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCccccCCCCccceeEEeccC-CCCcceeeccCHHHHHHHHHhcCCCc
Confidence 467899999999999999999998 99999999999977655443 4545433 23566789999999999999999999
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMS 200 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~ 200 (452)
|||||||||+|+++++|.||||||||||+|++++++|+++|++|++++..+.+ ..++.||+||||.||++
T Consensus 79 vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~ 158 (329)
T cd00775 79 VYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALK 158 (329)
T ss_pred EEEEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCCccccCCCCceEEEHHHHHH
Confidence 99999999999998655599999999999999999999999999999987765 13346999999999999
Q ss_pred HhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCC-CCccEEEE
Q 043787 201 RYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGA-KGLPFLKV 279 (452)
Q Consensus 201 ~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~-~gl~~~~~ 279 (452)
++....+. +.++.. .. +..+..|. .|..+
T Consensus 159 ~~~g~~~~--------~~~~~~------------------------------~~---------~~~~~~~~~~~~~~--- 188 (329)
T cd00775 159 EKTGIDFP--------ELDLEQ------------------------------PE---------ELAKLLAKLIKEKI--- 188 (329)
T ss_pred HHhCCCcc--------cccccC------------------------------CH---------HHHHHHHHHcCCCC---
Confidence 88322111 000000 00 00000000 00000
Q ss_pred ecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHH-HHHHHHHcCCCCCCCccEEEEeccCC
Q 043787 280 LDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRL-RTFVAHELGLIDNSKHSILWITDFPM 358 (452)
Q Consensus 280 ~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~l-R~~l~~~l~l~~~~~~~flWV~dFPl 358 (452)
+++ .+. ...|..+ ..++...++ .++||+|||.
T Consensus 189 -~~~-----------~~~----------------------------~~~l~~l~~~~ve~~~~-------~p~fi~~yP~ 221 (329)
T cd00775 189 -EKP-----------RTL----------------------------GKLLDKLFEEFVEPTLI-------QPTFIIDHPV 221 (329)
T ss_pred -CCC-----------CCH----------------------------HHHHHHHHHHHhccccC-------CCEEEECCCh
Confidence 000 000 0011111 112223333 5799999997
Q ss_pred CccCcccccccccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHc------CCCHHH--H
Q 043787 359 FEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIV------GISPEQ--F 430 (452)
Q Consensus 359 fe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~l------g~~~~~--~ 430 (452)
- ..||+|+.++|.. .+.+|||.++|+||.||+.|+||++.|++.|+.. |.+++. .
T Consensus 222 ~------------~~~f~~~~~~~~~-----~~~rfdl~~~G~Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~ 284 (329)
T cd00775 222 E------------ISPLAKRHRSNPG-----LTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMD 284 (329)
T ss_pred H------------hCcCcCcCCCCCC-----eeEEEEeEECCEEEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccch
Confidence 3 6789998776654 6899999999999999999999999999999663 676643 3
Q ss_pred hhhhhhhhhhhhcCCCCCCCCC
Q 043787 431 IFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 431 ~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
+| ||+|+++| +|||.
T Consensus 285 ~~----yl~a~~~G---~pp~~ 299 (329)
T cd00775 285 ED----FVTALEYG---MPPTG 299 (329)
T ss_pred HH----HHHHHHCC---CCCCC
Confidence 56 99999999 99994
No 32
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=3.8e-49 Score=389.51 Aligned_cols=224 Identities=43% Similarity=0.764 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCC-ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeee
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA-RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARC 137 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa-~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~ 137 (452)
+++||++++++|+||.+ +||+||+||+|++++++++ ..|.+++. ..|+.+||+||||+|+|+++++|++|||+|+||
T Consensus 1 ~~~rs~i~~~ir~~f~~-~gf~ev~tP~l~~~~~~~~~~~f~~~~~-~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~ 78 (269)
T cd00669 1 FKVRSKIIKAIRDFMDD-RGFLEVETPMLQKITGGAGARPFLVKYN-ALGLDYYLRISPQLFKKRLMVGGLDRVFEINRN 78 (269)
T ss_pred CcHHHHHHHHHHHHHHH-CCCEEEECCEEeccCCccccceEEeeec-CCCCcEEeecCHHHHHHHHHhcCCCcEEEEecc
Confidence 47899999999999998 9999999999998887654 44556543 247888999999999999999999999999999
Q ss_pred eecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC----------CCCCCCceeeHHHHHHHhCCCCC
Q 043787 138 FRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV----------QLPNPFPRLTYAEAMSRYGSDRP 207 (452)
Q Consensus 138 FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~----------~l~~pf~rity~eA~~~~g~dkp 207 (452)
||+|+.+.+|.+||||||+||+|.+++++|+++|+||+++++.+.+. +++.||+||||+||++.|+
T Consensus 79 fR~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~rit~~ea~~~~~---- 154 (269)
T cd00669 79 FRNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFELEDFGLPFPRLTYREALERYG---- 154 (269)
T ss_pred eeCCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccccccccccccCCCceEeeHHHHHHHhC----
Confidence 99995555555999999999999999999999999999999877542 2234555555555554321
Q ss_pred CCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccc
Q 043787 208 DTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEG 287 (452)
Q Consensus 208 d~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 287 (452)
T Consensus 155 -------------------------------------------------------------------------------- 154 (269)
T cd00669 155 -------------------------------------------------------------------------------- 154 (269)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCccccc
Q 043787 288 IPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQR 367 (452)
Q Consensus 288 ~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r 367 (452)
+|+||+|||+.
T Consensus 155 -------------------------------------------------------------~p~fi~d~P~~-------- 165 (269)
T cd00669 155 -------------------------------------------------------------QPLFLTDYPAE-------- 165 (269)
T ss_pred -------------------------------------------------------------CceEEECCCcc--------
Confidence 47999999985
Q ss_pred ccccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHH----HHhhhhhhhhhhhhc
Q 043787 368 LEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPE----QFIFAEVVAIPALSS 443 (452)
Q Consensus 368 ~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~----~~~~~f~~~l~a~~~ 443 (452)
.+.||++|..++.. .+.+|||++||+||+|||+|+||++.|++.|+..|++++ ..+| ||+|+++
T Consensus 166 ---~~~fy~~~~~~~~~-----~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~----yl~a~~~ 233 (269)
T cd00669 166 ---MHSPLASPHDVNPE-----IADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEF----YLKALEY 233 (269)
T ss_pred ---cCCCCCCcCCCCCC-----eEEEEEEeeCCEEEeeCchhcCCHHHHHHHHHHhCcChhhccccHHH----HHHHHHc
Confidence 24555667665543 689999999999999999999999999999999999998 6777 9999999
Q ss_pred CCCCCCCCC
Q 043787 444 GDFNCQPQT 452 (452)
Q Consensus 444 G~~~~~p~~ 452 (452)
| ||||.
T Consensus 234 G---~pp~~ 239 (269)
T cd00669 234 G---LPPHG 239 (269)
T ss_pred C---CCCCc
Confidence 9 99994
No 33
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=5.2e-47 Score=380.54 Aligned_cols=267 Identities=21% Similarity=0.332 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC-CC-CCccceeeccc--CCCceeeecCCHHHHHHHHhhcCCCceEEE
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST-PE-GARDYLVPSRV--QPGTFYALPQSPQLFKQMLMVSGFDKYYQI 134 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~e-Ga~~~~v~~~~--~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi 134 (452)
|++||.+++++|+||.+ +||+||+||+|+.++ ++ |++.|.+.+.. ..++..||+||||+|+|+++++|++|||||
T Consensus 1 l~~rs~i~~~ir~~f~~-~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 1 LRARARLLAAIRAFFAE-RGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred ChHHHHHHHHHHHHHHH-CCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 57899999999999998 999999999999873 44 45666554321 124567899999999999999999999999
Q ss_pred eeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCccccc
Q 043787 135 ARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQ 214 (452)
Q Consensus 135 ~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~ 214 (452)
|||||||+++++|.|||||||||++|.|++|+|+++|+|++++++. ++.||+||||+||+++|..-.+- +
T Consensus 80 gp~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~-----~~~~~~~it~~ea~~~~~~~~~~-~---- 149 (304)
T TIGR00462 80 CKVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD-----PFAPWERLSYQEAFLRYAGIDPL-T---- 149 (304)
T ss_pred cCceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh-----cCCCcEEEEHHHHHHHHhCCCcc-c----
Confidence 9999999997544499999999999999999999999999999975 35799999999999987432110 0
Q ss_pred ccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccccccc
Q 043787 215 LNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSS 294 (452)
Q Consensus 215 ~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~ 294 (452)
.+... ....+++.|.+ + +.+ ..
T Consensus 150 -------------------------------------~~~~~-----~~~~~~~~g~~---~----~~~---------~d 171 (304)
T TIGR00462 150 -------------------------------------ASLDE-----LAAAAAAHGVR---A----SEE---------DD 171 (304)
T ss_pred -------------------------------------CCHHH-----HHHHHHHcCCC---C----CCC---------CC
Confidence 00000 01112222210 0 000 01
Q ss_pred CChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccC
Q 043787 295 LGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHP 374 (452)
Q Consensus 295 l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHP 374 (452)
++... ...||.+ +...++ .-.|+||+|||.- ..|
T Consensus 172 ~~~~~--------------------------e~~l~~~---ie~~~~-----~~~p~fi~~yP~~------------~~~ 205 (304)
T TIGR00462 172 RDDLL--------------------------DLLFSEK---VEPHLG-----FGRPTFLYDYPAS------------QAA 205 (304)
T ss_pred hhHHH--------------------------HHHHHHH---HHHhcC-----CCCCEEEEcCccc------------cCc
Confidence 11111 1111111 122232 1258999999974 578
Q ss_pred cCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHH-------cCCCHHHH-hhhhhhhhhhhhcCCC
Q 043787 375 FTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI-------VGISPEQF-IFAEVVAIPALSSGDF 446 (452)
Q Consensus 375 FT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~-------lg~~~~~~-~~~f~~~l~a~~~G~~ 446 (452)
|+++++++.. .+.+|||.+||+||++|+.|+||++.|++.|+. .|+++..+ +| ||+|++||
T Consensus 206 ~~~~~~~~~~-----~~~rfdl~~~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~----yl~~~~~G-- 274 (304)
T TIGR00462 206 LARISPDDPR-----VAERFELYIKGLELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDER----FLAALEAG-- 274 (304)
T ss_pred CccccCCCCC-----eeEEEEEEECCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHH----HHHHHHcC--
Confidence 9888766643 688999999999999999999999999999976 79998888 46 99999999
Q ss_pred CCCCCC
Q 043787 447 NCQPQT 452 (452)
Q Consensus 447 ~~~p~~ 452 (452)
||||.
T Consensus 275 -~pP~~ 279 (304)
T TIGR00462 275 -LPECS 279 (304)
T ss_pred -CCCCC
Confidence 99994
No 34
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-45 Score=363.64 Aligned_cols=302 Identities=21% Similarity=0.343 Sum_probs=247.1
Q ss_pred CCCceEEEEeEEEEEecCCCC-CCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSK-LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~-~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
..|+.||.|+-++|++.|... .-..++ .+++.+..|++|||-+|....+.+|+.|+.+++++|++|.+ .|++
T Consensus 191 apgghEl~vdy~Eiig~Apag~~~n~ln------e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~-~~yt 263 (545)
T KOG0555|consen 191 APGGHELNVDYWEIIGLAPAGGFDNPLN------EESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFE-RGYT 263 (545)
T ss_pred CCCCceEEeeeeeeecccCCCccccccc------ccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHh-cCce
Confidence 468999999999999987421 112222 25778899999999999999999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeec
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~ 159 (452)
||.+|+|+....||+...|.-.+ .|+..||+||+|||++.++. .+++||+|.+.||+|.|+|+|| .|||++|+|++
T Consensus 264 EVtPPtmVQTQVEGGsTLFkldY--yGEeAyLTQSSQLYLEtclp-Algdvy~I~~SyRAEkSrTRRHLsEytHVEaE~a 340 (545)
T KOG0555|consen 264 EVTPPTMVQTQVEGGSTLFKLDY--YGEEAYLTQSSQLYLETCLP-ALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECA 340 (545)
T ss_pred ecCCCceEEEEecCcceEEeecc--cCchhhccchhHHHHHHhhh-hcCceeEecHhhhhhhhhhhhhhhhheeeeeecc
Confidence 99999999999999988775544 47778899999999999865 5899999999999999999999 89999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCC-----------CC---CCCCceeeHHHHHHHhCCCCCCCcccccccccccccccC
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKDV-----------QL---PNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLES 225 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~~-----------~l---~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~ 225 (452)
|++++++++.+|+|+.+.+..++.. ++ ..||.||.|.|||+.+.+.. ++-
T Consensus 341 fltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~P~~PFkRm~Y~dAI~wLke~~------vk~---------- 404 (545)
T KOG0555|consen 341 FLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFKAPKRPFKRMNYSDAIEWLKEHD------VKK---------- 404 (545)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCCCCCCchhcCCHHHHHHHHHhcC------CcC----------
Confidence 9999999999999999998877642 22 37999999999999885431 000
Q ss_pred ccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHH
Q 043787 226 PFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLI 305 (452)
Q Consensus 226 ~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~ 305 (452)
++|+. -.+..+|.++.
T Consensus 405 -------------------------------------------------------edg~~---fefGdDI~eAa------ 420 (545)
T KOG0555|consen 405 -------------------------------------------------------EDGTD---FEFGDDIPEAA------ 420 (545)
T ss_pred -------------------------------------------------------ccCcc---cccccchhhHH------
Confidence 01100 00011121111
Q ss_pred HhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCC-CCcc
Q 043787 306 RCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNP-EDMD 384 (452)
Q Consensus 306 ~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~-ed~~ 384 (452)
.+.|.+..| .+++++.||.- |+||+|+.- +|..
T Consensus 421 ---------------------------ER~mtdtIg-------~PIfLtrFpve------------iKsFYM~rc~dd~~ 454 (545)
T KOG0555|consen 421 ---------------------------ERKMTDTIG-------VPIFLTRFPVE------------IKSFYMKRCEDDPR 454 (545)
T ss_pred ---------------------------HHhhhhhcC-------CceEEeecccc------------ccceeeecccCccc
Confidence 124555555 58999999984 999999974 4443
Q ss_pred ChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCC
Q 043787 385 DLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQP 450 (452)
Q Consensus 385 ~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p 450 (452)
.+.|.|++++|+ ||.|||+||.|.+-..+-|+.-||++..+.| |+|.++|| +||+
T Consensus 455 -----lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYYW----y~DqrkyG--t~pH 510 (545)
T KOG0555|consen 455 -----LTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYYW----YTDQRKYG--TCPH 510 (545)
T ss_pred -----cceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCceE----Eeeccccc--cCCC
Confidence 678999999999 9999999999999999999999999999999 99999999 7765
No 35
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=2.2e-43 Score=354.65 Aligned_cols=270 Identities=25% Similarity=0.385 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCc--cceeeccc---CCCceeeecCCHHHHHHHHhhcCCCc
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR--DYLVPSRV---QPGTFYALPQSPQLFKQMLMVSGFDK 130 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~--~~~v~~~~---~~g~~~~L~qSpQl~kq~Lm~~g~~r 130 (452)
..+|++|+.+++++|+||.+ +||+||+||+|+..+..|+. +|.+.... ..|+..||+||||+++|+++++|++|
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~-~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~r 80 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFAD-RGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGP 80 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHH-CCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccc
Confidence 46899999999999999998 99999999999887766653 33332211 23677789999999999989999999
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCc
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTR 210 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r 210 (452)
||+||||||+|++.++|.+||||||||++|.|++|+|+++|+||++++.. .||++|||+||+++|...++- +
T Consensus 81 vf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~-------~~~~~i~~~eaf~~~~g~~~~-~ 152 (306)
T PRK09350 81 IFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC-------EPAESLSYQQAFLRYLGIDPL-S 152 (306)
T ss_pred eEEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc-------CCceEEEHHHHHHHHhCCCCC-c
Confidence 99999999999995545599999999999999999999999999999852 689999999999988432110 0
Q ss_pred ccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccc
Q 043787 211 FSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPA 290 (452)
Q Consensus 211 ~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 290 (452)
.+...+ .+.+.+.|..... ..+
T Consensus 153 -----------------------------------------~~~~~~-----~~~~~~~g~~~~~-----~~~------- 174 (306)
T PRK09350 153 -----------------------------------------ADKTQL-----REVAAKLGLSNIA-----DEE------- 174 (306)
T ss_pred -----------------------------------------CCHHHH-----HHHHHHcCCCCcC-----CCC-------
Confidence 000000 0111111110000 000
Q ss_pred ccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHH-HHHcCCCCCCCccEEEEeccCCCccCccccccc
Q 043787 291 LVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFV-AHELGLIDNSKHSILWITDFPMFEWNDSEQRLE 369 (452)
Q Consensus 291 ~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l-~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~ 369 (452)
. .. .+.+..|=..+ -..++ .-.|+||+|||.-
T Consensus 175 --~-----~~-------------------------~~~~~~l~~~~ve~~l~-----~~~p~fi~~yP~~---------- 207 (306)
T PRK09350 175 --E-----DR-------------------------DTLLQLLFTFGVEPNIG-----KEKPTFVYHFPAS---------- 207 (306)
T ss_pred --C-----CH-------------------------HHHHHHHHHHHHHHhcC-----CCCCEEEEcCccc----------
Confidence 0 00 01111111111 12233 1148999999973
Q ss_pred ccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHH-------cCCCHHHHhhhhhhhhhhhh
Q 043787 370 ALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI-------VGISPEQFIFAEVVAIPALS 442 (452)
Q Consensus 370 a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~-------lg~~~~~~~~~f~~~l~a~~ 442 (452)
..||+++++++.. .+.+|||.+||+||++|+.|+||++.|++.|+. .|+++..++| .||+|++
T Consensus 208 --~~~~a~~~~~~~~-----~~~rfdl~i~G~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~---~~l~a~~ 277 (306)
T PRK09350 208 --QAALAKISTEDHR-----VAERFEVYFKGIELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDE---NLIAALE 277 (306)
T ss_pred --cCccccccCCCCC-----eeEEEEEEECCEEEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcH---HHHHHHH
Confidence 4589998776654 689999999999999999999999999999974 8888888854 3899999
Q ss_pred cCCCCCCCCC
Q 043787 443 SGDFNCQPQT 452 (452)
Q Consensus 443 ~G~~~~~p~~ 452 (452)
+| ||||.
T Consensus 278 ~G---~pp~~ 284 (306)
T PRK09350 278 AG---LPDCS 284 (306)
T ss_pred cC---CCCCC
Confidence 99 99994
No 36
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-43 Score=366.09 Aligned_cols=322 Identities=26% Similarity=0.433 Sum_probs=245.9
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
+||++.|.|+++++|++|..++|=.. +..++.++|.+.||+||- ++..+..+..||+|+++||+||.+ +||+
T Consensus 128 ~~GelSv~v~~~~lLsKsL~pLPeK~------hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~-~gFl 200 (502)
T COG1190 128 KTGELSVSVEELRLLSKSLRPLPEKF------HGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDD-RGFL 200 (502)
T ss_pred CCCceEEEEEEEeeecccCCCCChhh------cCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCe
Confidence 58999999999999999987777433 335678999999999997 678999999999999999999988 9999
Q ss_pred EEcCceEeecCCC-CCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeec
Q 043787 81 EIETPVLSRSTPE-GARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~e-Ga~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~ 159 (452)
||+||+|...... .|++|..-.+.. +...||+.+|+||++.|+++|++|||+|+|+||||+.+++|+|||||||+|++
T Consensus 201 EVETP~lq~i~GGA~ArPF~ThhNal-d~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~A 279 (502)
T COG1190 201 EVETPMLQPIPGGAAARPFITHHNAL-DMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQA 279 (502)
T ss_pred EeccccccccCCCcccccceeeeccc-CCceEEeeccHHHHHHHHhcCchhheeeccccccCCCccccCcchhhHHHHHH
Confidence 9999999875533 256777654433 34467999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCC-CCCcccccccccccccccCccc
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDR-PDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dk-pd~r~~~~~~~~~~~~~~~~f~ 228 (452)
++|++|+|+++|+|++.++.++.| +++..||+|+++.||++.+.+.. .++ .
T Consensus 280 YaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~~------~------------ 341 (502)
T COG1190 280 YADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFDDL------F------------ 341 (502)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCcccccc------C------------
Confidence 999999999999999999999986 36789999999999998875431 110 0
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
+..+ +.+.+++.|.+......
T Consensus 342 ------------------------~~e~-----~~~~ak~~~i~~~~~~~------------------------------ 362 (502)
T COG1190 342 ------------------------DDEE-----AKELAKKHGIEVEKYGT------------------------------ 362 (502)
T ss_pred ------------------------CHHH-----HHHHHHHhCCCcCcccc------------------------------
Confidence 0000 11223332222110000
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS 388 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~ 388 (452)
..+|+|=.++=+.+ +...-..|.+|+|||.- --|.+.++.++..
T Consensus 363 ------------------~~~g~ll~~lFe~~--vE~~liqPTFv~d~P~e------------iSPLak~~~~~p~---- 406 (502)
T COG1190 363 ------------------WGLGHLLNELFEEL--VEAKLIQPTFVTDHPVE------------ISPLAKRHRSNPG---- 406 (502)
T ss_pred ------------------ccHHHHHHHHHHHH--hhhhhcCCceeecCccc------------cCccccCCCCCcc----
Confidence 01222222222211 22233578999999974 5688888877655
Q ss_pred hhhceeeeeecCeEeeccccccccHHHHHHHHHH------cCCCHH-HHhhhhhhhhhhhhcCCCCCCCC
Q 043787 389 ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI------VGISPE-QFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 389 v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~------lg~~~~-~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.-++|.+||.||+-|=-=..||..|+.-|+. +|=+++ .+.+ -|++||.|| +||-
T Consensus 407 -~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~De---dfv~ALeyG---mPPT 469 (502)
T COG1190 407 -LTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDE---DFVEALEYG---MPPT 469 (502)
T ss_pred -hhhhheeeeccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCH---HHHHHHhcC---CCCC
Confidence 678999999999999999999999999999953 333322 1222 378999999 9993
No 37
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-37 Score=310.66 Aligned_cols=198 Identities=27% Similarity=0.546 Sum_probs=168.4
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++.|.+.++.+|++|..++|-... ...+.|+|.+.||||+- ++..+..|+.|++|+..||.||.+ +||+
T Consensus 173 ~~gELSi~~~~~~lLspcLh~lP~~~~------gLkD~EtRyrqRylDlilN~~~r~~f~~RakII~~iRkfld~-rgFl 245 (560)
T KOG1885|consen 173 KSGELSIIPNEIILLSPCLHMLPHEHF------GLKDKETRYRKRYLDLILNPEVRDRFRIRAKIISYIRKFLDS-RGFL 245 (560)
T ss_pred CCceEEEeecchheecchhccCChhhc------CCCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhh-cCce
Confidence 468899999999999999888882221 13467899999999997 778999999999999999999988 9999
Q ss_pred EEcCceEeecCCC-CCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeec
Q 043787 81 EIETPVLSRSTPE-GARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~e-Ga~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~ 159 (452)
|||||++...... -|++|..-.. .-+...||+.+|+||+++|+++|++|||+||+.||||..+.+|+||||.+|+||+
T Consensus 246 EVETPmmn~iaGGA~AkPFIT~hn-dldm~LylRiAPEL~lK~LvVGGldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~A 324 (560)
T KOG1885|consen 246 EVETPMMNMIAGGATAKPFITHHN-DLDMDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 324 (560)
T ss_pred EecchhhccccCccccCceeeccc-ccCcceeeeechHHHHHHHHhccHHHHHHHHHHhhhcCcccccCCCcchHHHHHH
Confidence 9999999875533 2567765443 2345578999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC-----------------CCCCCCCceeeHHHHHHH-hCCCCC
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKD-----------------VQLPNPFPRLTYAEAMSR-YGSDRP 207 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~-----------------~~l~~pf~rity~eA~~~-~g~dkp 207 (452)
|+|++|+|+.+|.|++.++..+.| +++..||+|+++-+.+++ +|.+-|
T Consensus 325 Yady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~mi~~L~k~lgi~l~ 390 (560)
T KOG1885|consen 325 YADYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEMIEELEKELGIKLP 390 (560)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeHHHHHHHHhCCCCC
Confidence 999999999999999999998865 245688999998888875 454433
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1e-30 Score=252.67 Aligned_cols=205 Identities=25% Similarity=0.409 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCc--c----ceeecccCCCceeeecCCHHHHHHHHhhcCCCc
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR--D----YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDK 130 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~--~----~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~r 130 (452)
..|..|++|+.+||.||.+ +||+||+||.|+.++...++ . |+.|... +++..||++||++++|.|+++|-++
T Consensus 14 ~~ll~Ra~i~~~iR~FF~e-rg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~-~~~~l~L~TSPEy~mKrLLAag~~~ 91 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAE-RGVLEVETPALSVAPVTDIHLHPFETEFLGPGGA-KGKPLWLHTSPEYHMKRLLAAGSGP 91 (322)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCceEecchHhhcCCCCccceeeeeeEEeccCcc-ccceeeeecCcHHHHHHHHHccCCc
Confidence 3489999999999999988 99999999999999877665 2 2323322 3567789999999999999999999
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHh-CCCCCCC
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY-GSDRPDT 209 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~-g~dkpd~ 209 (452)
+|||++||||++.+..|||||||||||..+.++.-+|+.+.+|++.++.. .+++++||+||+.+| |.|.+.+
T Consensus 92 ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~-------~~~E~ls~~eaF~r~~gid~l~~ 164 (322)
T COG2269 92 IFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLEC-------VEAERLSYQEAFLRYLGIDPLSA 164 (322)
T ss_pred chhhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHcc-------CCcceeeHHHHHHHHhCCCcccc
Confidence 99999999999988889999999999999999999999999999988863 469999999999998 5554321
Q ss_pred -----c-----cccc---ccccccccccCccccccccccCC----CeEEEEEccCCCcccchhhhccCc-chHHHHHcCC
Q 043787 210 -----R-----FSLQ---LNDVSDIFLESPFRVFSDSLKSG----GIIKVLCVPSGAKTYSNTALKKGD-IYNEAIKSGA 271 (452)
Q Consensus 210 -----r-----~~~~---~~~~~~~~~~~~f~~~~~~i~~~----~~v~~~~~p~~~~~~s~~~~~~~~-~~~~~~~~~~ 271 (452)
+ .++. -.++.+++ -.+|...||++ .++++++||..+.++.+.. .+| ...+..+...
T Consensus 165 ~~~~L~~~~~~~~l~~~~~~~~d~L~----~~lf~~~VEP~lg~~rpt~ly~fP~~qaaLA~i~--~~D~rVAERFElY~ 238 (322)
T COG2269 165 DKTELREAAAKLGLSAATDEDWDTLL----QLLFVEGVEPNLGKERPTFLYHFPASQAALAQIS--TGDPRVAERFELYY 238 (322)
T ss_pred cHHHHHHHHHhcCCCCCCccCHHHHH----HHHHHhhcCcccCCCCceEEEeCcHHHHHhhccC--CCCcchhhhhhhee
Confidence 1 1111 12344555 36788888875 6899999998776665522 222 2455666777
Q ss_pred CCccE
Q 043787 272 KGLPF 276 (452)
Q Consensus 272 ~gl~~ 276 (452)
||+..
T Consensus 239 kGiEL 243 (322)
T COG2269 239 KGIEL 243 (322)
T ss_pred eeeee
Confidence 87754
No 39
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=99.67 E-value=2.6e-16 Score=170.21 Aligned_cols=138 Identities=16% Similarity=0.251 Sum_probs=118.4
Q ss_pred ceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCc-----cc-chhhhccCcchH
Q 043787 191 PRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAK-----TY-SNTALKKGDIYN 264 (452)
Q Consensus 191 ~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~-----~~-s~~~~~~~~~~~ 264 (452)
..+||.|||++||+|||| ++.|++++|.+++|++|...+++++.|.+|++|+... .+ +++.++ .+.+
T Consensus 262 ~lltY~EAM~rYGSDKPD-----eivDVTd~f~~t~fkif~~~ik~gg~VkaI~vp~~~~~l~~e~~~srr~~d--~l~e 334 (630)
T PRK04028 262 NLLKIRDELKERGASVED-----EIVDVTELFKDTKSKIIKKALKKGGKVLAIKLPGFKGLLGREIQPGRRLGT--ELAD 334 (630)
T ss_pred HHHHHHHHHHHcCCCCCc-----cceehHHHhccCCchhhhhhhcCCCeEEEEEcCCcccccccccccCHHHHH--HHHH
Confidence 469999999999999999 8999999999999999999888889999999998653 12 566654 3567
Q ss_pred HHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCC
Q 043787 265 EAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLID 344 (452)
Q Consensus 265 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~ 344 (452)
+++.+|++|++|++ + +. ...++++++++|.+++++++||++||++|+...++++||+||+++++.++.+.
T Consensus 335 ~aK~~GakGL~~~~--e---l~-----~~~is~e~l~~L~e~l~ak~GDll~~~a~k~~~v~~~LG~LR~~la~~l~~v~ 404 (630)
T PRK04028 335 YAKAWGVGGIFHTD--E---LP-----AYGITEEEVEALREALGAGENDAFILVADEEEKAEKALEAVIERAKEALEGVP 404 (630)
T ss_pred HHHHcCCCceEEec--c---cc-----cCCCCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88999999999987 2 21 12347888999999999999999999999999999999999999999998664
Q ss_pred C
Q 043787 345 N 345 (452)
Q Consensus 345 ~ 345 (452)
.
T Consensus 405 ~ 405 (630)
T PRK04028 405 E 405 (630)
T ss_pred c
Confidence 4
No 40
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=99.56 E-value=2e-15 Score=126.86 Aligned_cols=95 Identities=39% Similarity=0.608 Sum_probs=81.7
Q ss_pred ccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCC
Q 043787 230 FSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSA 309 (452)
Q Consensus 230 ~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~ 309 (452)
|.+.++.++.|+++++|..++.+||++++. +.++|+++|++||+|+++.+ +.+ .||+.|+|++++.++|.+++++
T Consensus 1 F~~~l~~~g~Vkai~vp~~~~~~srk~id~--l~~~ak~~ga~gL~~ikv~~-~~~--~s~i~kfl~e~~~~~l~~~~~a 75 (95)
T PF02938_consen 1 FSNALKKGGSVKAIVVPGGAAKLSRKQIDK--LEEFAKKFGAKGLAWIKVEE-GEL--KSPIAKFLSEEELKALIERLGA 75 (95)
T ss_dssp HHHHHHTTSEEEEEEETTG-TTTTHCCCCC--CCCHHHHCCHCHCCCEEEST-CEE--ECTTCCCCHHHHHHHHHHHTT-
T ss_pred CchHHhCCCEEEEEEeCCccccCCHHHHHH--HHHHHHHhCCCCceeeeEcC-Ccc--cCcccccCCHHHHHHHHHHhCC
Confidence 345567789999999999777899999875 56899999999999999976 434 6999999999999999999999
Q ss_pred CCCcEEEEEcCCchhHHHHH
Q 043787 310 GPSDLILFAVGHPASVNKTL 329 (452)
Q Consensus 310 ~~gd~~~~~a~~~~~~~~~L 329 (452)
++||+|||+||++..++++|
T Consensus 76 ~~GD~ll~~Ag~~~~v~~~L 95 (95)
T PF02938_consen 76 KPGDLLLFVAGKKEIVNKAL 95 (95)
T ss_dssp -TTEEEEEEEESHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHhhC
Confidence 99999999999999999886
No 41
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.24 E-value=4.5e-11 Score=124.26 Aligned_cols=133 Identities=19% Similarity=0.321 Sum_probs=96.1
Q ss_pred CCHhhhhccceeeecchHHHHHHHH-----HHHHHHHHHHHHhhcCCeEEEcCceEeecCC------CCCccceeecccC
Q 043787 37 VKEEIRLRYRCLDLRRQQMNHNILL-----RHKVVKLIRRYLEDVHGFVEIETPVLSRSTP------EGARDYLVPSRVQ 105 (452)
Q Consensus 37 ~~~~~rl~~r~LdlR~~~~~~~l~~-----Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~------eGa~~~~v~~~~~ 105 (452)
...|+|+.+| |++.+++++.. .+.+.+++|++|.. .||.||.||+|++... .+..++..+...
T Consensus 180 ~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~-~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~- 253 (417)
T PRK09537 180 KELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVD-RGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR- 253 (417)
T ss_pred hhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHH-CCCEEEECCeeecHHHHHHhCCCCcccchhhhee-
Confidence 4578888888 99999999999 99999999999999 9999999999975421 111111111100
Q ss_pred CCceeeec--CCHHHHHHHHh----hcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHH
Q 043787 106 PGTFYALP--QSPQLFKQMLM----VSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIR 175 (452)
Q Consensus 106 ~g~~~~L~--qSpQl~kq~Lm----~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~ 175 (452)
-+...+|+ ..|+++..+.. ....-|+|+||+|||+|..+..|.+||+|++++..+. ++.+++.+++++++
T Consensus 254 ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~ 331 (417)
T PRK09537 254 VDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLK 331 (417)
T ss_pred eCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHH
Confidence 12345687 56898876421 1123589999999999988777779999999999875 46666655555554
No 42
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.06 E-value=3.6e-10 Score=105.89 Aligned_cols=112 Identities=31% Similarity=0.415 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc----cceeecccCCCceeeecCCHHHHHHHHhhc----CCCceE
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR----DYLVPSRVQPGTFYALPQSPQLFKQMLMVS----GFDKYY 132 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~----~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~----g~~rvf 132 (452)
|+.+.+.+|++|.. .||.||.||.++..+. +... ....... ..+..++|++|....+...++. ..-|+|
T Consensus 2 ~~~~~~~~r~~l~~-~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lf 79 (211)
T cd00768 2 RSKIEQKLRRFMAE-LGFQEVETPIVEREPLLEKAGHEPKDLLPVGA-ENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLA 79 (211)
T ss_pred HHHHHHHHHHHHHH-cCCEEeEcceecHHHHHHHcCccHhheeeeec-CCCCEEEECCCCcHHHHHHHHhhcccCCEEEE
Confidence 67899999999988 9999999999987632 1111 1111111 2356678999988888765543 456999
Q ss_pred EEeeeeecCCCCC--CCCcceeeeeeeecCCC------HHHHHHHHHHHHH
Q 043787 133 QIARCFRDEDLRA--DRQPEFTQLDMELAFTP------LDDMLRLNEDLIR 175 (452)
Q Consensus 133 qi~~~FR~E~~~~--~r~~EFtqLe~e~~f~~------~~dlm~~~E~li~ 175 (452)
+||+|||.|.... .|..||+|+++++.+.+ ..+++..++++++
T Consensus 80 eig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~ 130 (211)
T cd00768 80 EIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR 130 (211)
T ss_pred EEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH
Confidence 9999999997654 45589999999999964 3566666666664
No 43
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=98.88 E-value=7.4e-09 Score=112.71 Aligned_cols=128 Identities=13% Similarity=0.192 Sum_probs=104.5
Q ss_pred eeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhcc-----CcchHHH
Q 043787 192 RLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKK-----GDIYNEA 266 (452)
Q Consensus 192 rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~-----~~~~~~~ 266 (452)
-+.|.|+|.+.|.+. ++++.|++++|.+++|++|.+.+ .|+++++|+.. .+++++++. ..+.+++
T Consensus 260 ll~~~~~l~~~g~~v-----~~eI~DVTdlF~~t~fkvf~~~l----~VkaI~vpg~~-~lsrkei~pgrr~gdeL~e~a 329 (620)
T TIGR00134 260 LLKIRDELQERGAVV-----EEKIFDVTEVFADTKSKIISNAE----SVKAVLLRGFD-GLVGVEIQPGRRLGTEFADYA 329 (620)
T ss_pred HHHhhhhHhhcCCcc-----ccccccccHhhccCCchhccccc----eEEEEEcCCCc-ccchhhhcccccchHHHHHHH
Confidence 477889998888743 45889999999999999998754 79999999864 489988843 1355688
Q ss_pred HHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHH
Q 043787 267 IKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHE 339 (452)
Q Consensus 267 ~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~ 339 (452)
+.+|++||+|+ + + +. ...+++++.++|.+.+++++||+++|+||+...++++||+|....-+.
T Consensus 330 K~~GakGL~~~---d-e-lp-----~~~it~eev~~L~e~l~ak~GD~ll~vAdk~~~v~~aL~~v~~R~ke~ 392 (620)
T TIGR00134 330 KKRGVGGIFHT---D-E-LP-----AYGITEEEVRGLRDAVGAEQGDAVVMVAHERVTVERALREVIERAKMA 392 (620)
T ss_pred HHcCCCceEee---c-c-cc-----cCCCCHHHHHHHHHHhCCCCCCEEEEEcCcHHHHHHHHHHHHhhhhhh
Confidence 89999999997 2 2 21 123788999999999999999999999999999999999997766554
No 44
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=98.80 E-value=4.4e-08 Score=102.21 Aligned_cols=114 Identities=19% Similarity=0.332 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC------CCCccceeecccCCCceeeec--CCHHHHHHHHhh----cC
Q 043787 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP------EGARDYLVPSRVQPGTFYALP--QSPQLFKQMLMV----SG 127 (452)
Q Consensus 60 ~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~------eGa~~~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~----~g 127 (452)
--.+.+.+.+|++|.. .||.||.||+|++... ++..+...+... -++..+|+ ..|+++..+... ..
T Consensus 240 ~~~~~Led~IRevfvg-~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk-~ee~lvLRPdLTPsLaR~La~N~~~l~~ 317 (453)
T TIGR02367 240 DYLGKLERDITKFFVD-RGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR-VDKNFCLRPMLAPNLYNYLRKLDRALPD 317 (453)
T ss_pred cHHHHHHHHHHHHHHH-CCCEEEECCeecchHHHHhhcCccCCcccccceE-ecCceEecccCHHHHHHHHHHhhhhccC
Confidence 3458899999999998 9999999999973210 111111111100 12345787 779998755321 22
Q ss_pred CCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHH
Q 043787 128 FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIR 175 (452)
Q Consensus 128 ~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~ 175 (452)
-.|+|+||+|||+|..+..|..||+|++++.++. ++.|+..++.++++
T Consensus 318 PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr 367 (453)
T TIGR02367 318 PIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLD 367 (453)
T ss_pred CeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4599999999999998888889999999999885 67777755444443
No 45
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.66 E-value=1.3e-07 Score=87.43 Aligned_cols=115 Identities=29% Similarity=0.375 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHh-hcCCeEEEcCceEeecCC-C--CC-----ccceeecccCCCceeeecCCH-HHHHHHHh---hc-
Q 043787 61 LRHKVVKLIRRYLE-DVHGFVEIETPVLSRSTP-E--GA-----RDYLVPSRVQPGTFYALPQSP-QLFKQMLM---VS- 126 (452)
Q Consensus 61 ~Rs~i~~~iR~ff~-~~~gF~EV~TPiL~~~~~-e--Ga-----~~~~v~~~~~~g~~~~L~qSp-Ql~kq~Lm---~~- 126 (452)
++++|.+.+++.+. + .||.||.||+|.+... + |- ...+.... ..++.|+|.-+. +.+-.++. .+
T Consensus 1 l~~~l~~~~~~~~~~~-~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~-~~~~~~~L~pt~~~~~~~~~~~~~~~~ 78 (173)
T PF00587_consen 1 LRNALERFIREEFVLK-FGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKD-RGDEEYCLRPTSEPGIYSLFKNEIRSS 78 (173)
T ss_dssp HHHHHHHHHHHHHHHH-TTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEE-TTTEEEEE-SSSHHHHHHHHHHHEEBH
T ss_pred CHHHHHHHHHHHhHHh-cCCEEEECCeEEehHHhhhccccccccCCeeeeee-cccccEEeccccccceeeeecceeeec
Confidence 57889999999998 7 9999999999998752 1 11 12222211 123557885443 22222211 11
Q ss_pred ---CCCceEEEeeeeecCC---CCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 127 ---GFDKYYQIARCFRDED---LRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 127 ---g~~rvfqi~~~FR~E~---~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
---|+||+|+|||+|. .+-.|--||+|.|++....+ ++..+..+.++..+.
T Consensus 79 ~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~ 135 (173)
T PF00587_consen 79 YRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYK 135 (173)
T ss_dssp GGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred cccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHH
Confidence 1248999999999993 33457789999999887777 777777777765443
No 46
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.65 E-value=1.7e-07 Score=95.40 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCc--cceeecccCCCcee-----ee--cCCHHHHHHHHhhcCCCceE
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GAR--DYLVPSRVQPGTFY-----AL--PQSPQLFKQMLMVSGFDKYY 132 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~--~~~v~~~~~~g~~~-----~L--~qSpQl~kq~Lm~~g~~rvf 132 (452)
+.+...||++|.. .||.|+++|.|++..-. ++- +--+|+|.....+| .| ++||-+..-+.-...--|+|
T Consensus 111 ~~~~~~Ir~if~~-mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp~qir~L~~~~~Pirif 189 (339)
T PRK00488 111 TQTIEEIEDIFVG-MGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSPVQIRTMEKQKPPIRII 189 (339)
T ss_pred HHHHHHHHHHHHh-CCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcHHHHHHHHhcCCCeEEE
Confidence 6788999999998 99999999999753211 111 11234443333333 23 57887766553222235899
Q ss_pred EEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHHH
Q 043787 133 QIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 133 qi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~~ 179 (452)
++|+|||.+..+++|.|+|+|+|.-++. +++.++...++.+++.+|.
T Consensus 190 ~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg 238 (339)
T PRK00488 190 APGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFG 238 (339)
T ss_pred EeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999997777 5899999999999998885
No 47
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.54 E-value=4.4e-07 Score=89.11 Aligned_cols=115 Identities=24% Similarity=0.450 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecC--------CCC--Ccc----ceeecccCC--Cceeee--cCCHHHHHHH-H
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRST--------PEG--ARD----YLVPSRVQP--GTFYAL--PQSPQLFKQM-L 123 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~--------~eG--a~~----~~v~~~~~~--g~~~~L--~qSpQl~kq~-L 123 (452)
+++.+.+|++|.. .||.||.+|.+.+.. |.. ||+ |.+... .. .....| ++||.+..-+ .
T Consensus 20 ~~~~~~i~~~~~~-~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p-~~~~~~~~vLRThts~~~~~~l~~ 97 (247)
T PF01409_consen 20 TKFIREIRDIFVG-MGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNP-YSAEEDYSVLRTHTSPGQLRTLNK 97 (247)
T ss_dssp HHHHHHHHHHHHC-TTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSS-SBCECSSEEE-SSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-CCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeecc-ccccchhhhhhhhhhHHHHHHHHH
Confidence 5677889999988 999999999996532 211 222 111000 00 122235 3567666544 1
Q ss_pred hhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHHHHH
Q 043787 124 MVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 124 m~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~i~~ 179 (452)
-...--|+|+||+|||.|..+++|.|+|+|+|.-.+.- ++.+++..++.+++++|.
T Consensus 98 ~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG 155 (247)
T PF01409_consen 98 HRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFG 155 (247)
T ss_dssp TSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHT
T ss_pred hcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhh
Confidence 12345799999999999999999999999999988774 899999999999998874
No 48
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.47 E-value=1.5e-06 Score=83.64 Aligned_cols=112 Identities=19% Similarity=0.307 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCcccee---------eccc-CCCceeeecCC--HHHHHHHHhhcCCCc
Q 043787 64 KVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GARDYLV---------PSRV-QPGTFYALPQS--PQLFKQMLMVSGFDK 130 (452)
Q Consensus 64 ~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~~~~v---------~~~~-~~g~~~~L~qS--pQl~kq~Lm~~g~~r 130 (452)
++.+.+|++|.. .||.||.|+.+++...+ ..-.+.. +... +|- .-+|++| |.+.+.+.-...--|
T Consensus 5 ~~~~~ir~~L~~-~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL~~l~~N~~~~~ 82 (218)
T cd00496 5 KVIEEIEDIFVS-MGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQARALAKLKPPIR 82 (218)
T ss_pred HHHHHHHHHHHH-CCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHHHHHHhcCCCee
Confidence 456778999988 99999999999876211 1100000 0011 111 2356655 888765432125679
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRKI 177 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~i 177 (452)
+|+||+|||.+..+..|.|||+||++.+++. ++.+++..+|+++..+
T Consensus 83 lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 83 IFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred EEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9999999999875545568999999999997 8999999999998643
No 49
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=6.9e-07 Score=90.63 Aligned_cols=116 Identities=23% Similarity=0.330 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCc--cceeecccCCCcee--------ee--cCCHHHHHHHHhhcC-C
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GAR--DYLVPSRVQPGTFY--------AL--PQSPQLFKQMLMVSG-F 128 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~--~~~v~~~~~~g~~~--------~L--~qSpQl~kq~Lm~~g-~ 128 (452)
..++..++++|.. .||.+++.|.+.+.--. .|- +-.+|+|...+.|| -| ++||-+-..+.--.. -
T Consensus 114 ~~~~e~i~~iF~~-mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P 192 (335)
T COG0016 114 TQTIEEIEDIFLG-MGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIP 192 (335)
T ss_pred HHHHHHHHHHHHH-cCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCC
Confidence 5678889999988 99999999977543211 222 22245554444544 12 467766665542222 6
Q ss_pred CceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~~ 179 (452)
-|+|++|+|||.|..+++|.|||.|+|.-... +++.+|+.+++++++.++.
T Consensus 193 ~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg 245 (335)
T COG0016 193 IKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFG 245 (335)
T ss_pred ceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999965554 5899999999999998884
No 50
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.46 E-value=2.3e-06 Score=84.35 Aligned_cols=100 Identities=25% Similarity=0.318 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC---C----Ccc-ceeecccCCCceeeec--CCHHHHHHHHhh---
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE---G----ARD-YLVPSRVQPGTFYALP--QSPQLFKQMLMV--- 125 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e---G----a~~-~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~--- 125 (452)
.+.|..+.+.+++.|.+ +||.||.||+|...+.- + ..+ |.+.+. .|+.++|+ ..|++..-....
T Consensus 2 ~~~~~~l~~~l~~~f~~-~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~--~g~~l~LRpd~T~~iaR~~a~~~~~ 78 (261)
T cd00773 2 AALRRYIEDTLREVFER-YGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDK--GGRDLALRPDLTAPVARAVAENLLS 78 (261)
T ss_pred hHHHHHHHHHHHHHHHH-cCCEEeeccceeeHHHhcccccccccceEEEEECC--CCCEEEeCCCCcHHHHHHHHhcCcc
Confidence 36788999999999988 99999999999886421 1 112 222222 46778885 345555433211
Q ss_pred -cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 126 -SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 126 -~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
...-|+|++++|||.|.....|..||+|+++|+...
T Consensus 79 ~~~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~ 115 (261)
T cd00773 79 LPLPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGS 115 (261)
T ss_pred CCCCeEEEEEcCEEecCCCCCCCccceEEeceeeeCC
Confidence 134599999999999998877778999999999887
No 51
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.42 E-value=1.7e-06 Score=83.18 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCC-Cc----cce-eeccc--CCCceeeecC--CHHHHH---HHH
Q 043787 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEG-AR----DYL-VPSRV--QPGTFYALPQ--SPQLFK---QML 123 (452)
Q Consensus 60 ~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eG-a~----~~~-v~~~~--~~g~~~~L~q--SpQl~k---q~L 123 (452)
+++.+|.+.+++.|.. .||.||.||.|...+ ..| .. +.+ +.... ..+..++|+- .+.++. +..
T Consensus 3 ~~~~~l~~~~~~~~~~-~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 3 ALWRALERFLDDRMAE-YGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 5788999999999988 999999999998765 222 11 111 11110 0046677742 233332 211
Q ss_pred hh--cCCCceEEEeeeeecCCCC---CCCCcceeeeeeeecCCC
Q 043787 124 MV--SGFDKYYQIARCFRDEDLR---ADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 124 m~--~g~~rvfqi~~~FR~E~~~---~~r~~EFtqLe~e~~f~~ 162 (452)
.. ..--|+|++++|||+|.+. -.|..||+|.|+|..+.+
T Consensus 82 ~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred ccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 11 1234899999999999876 457789999999988765
No 52
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.42 E-value=1.3e-06 Score=93.06 Aligned_cols=49 Identities=31% Similarity=0.501 Sum_probs=41.5
Q ss_pred CCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHH
Q 043787 128 FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRK 176 (452)
Q Consensus 128 ~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~ 176 (452)
-.|+|+|++|||+|..+++|.|||+|+|..+... +..+++.++.++++.
T Consensus 357 P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~ 407 (494)
T PTZ00326 357 PKKYFSIDRVFRNETLDATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRR 407 (494)
T ss_pred CceEEecCCEecCCCCCCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 4699999999999999999999999999999885 567777766665544
No 53
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.34 E-value=5.9e-06 Score=81.92 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCCc------c-ceeecccCCC----ceeeec-CCH----HHH
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGAR------D-YLVPSRVQPG----TFYALP-QSP----QLF 119 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa~------~-~~v~~~~~~g----~~~~L~-qSp----Ql~ 119 (452)
.+++.+|.+.+++-+.+ .||.||.||.|....- .|.. + |.+..+ .+ ..++|. +|- .++
T Consensus 32 ~~i~~~I~~~i~~~~~~-~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~--~~~~~~~~l~LrPt~e~~~~~~~ 108 (264)
T cd00772 32 KAILDKIENVLDKMFKE-HGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDA--GDEELEEDFALRPTLEENIGEIA 108 (264)
T ss_pred HHHHHHHHHHHHHHHHH-cCCeEEECCeeccHHHHhhcCCcccccCccceEEEeC--CCCccCceEEECCCCCHHHHHHH
Confidence 57889999999999988 9999999999987542 1211 2 222222 22 567774 332 222
Q ss_pred HHHHhh-cC-CCceEEEeeeeecCCCC-CC--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 120 KQMLMV-SG-FDKYYQIARCFRDEDLR-AD--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 120 kq~Lm~-~g-~~rvfqi~~~FR~E~~~-~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
...+.. .. --|+||+++|||+|... .. |..||+|.|.+..+++.++..+.++.++.
T Consensus 109 ~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~ 169 (264)
T cd00772 109 AKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLS 169 (264)
T ss_pred HhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHH
Confidence 222211 11 24999999999999533 33 77899999998877899998888888874
No 54
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.32 E-value=2.3e-06 Score=84.34 Aligned_cols=115 Identities=24% Similarity=0.292 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--C-CC-----ccce-eecccCCCceeeecCCH-----HHHHHHH
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E-GA-----RDYL-VPSRVQPGTFYALPQSP-----QLFKQML 123 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e-Ga-----~~~~-v~~~~~~g~~~~L~qSp-----Ql~kq~L 123 (452)
-.+++.+|.+.+++.+.. .||.||.||+|...+- . |- .+.+ +..+ .++.++|.... .++...+
T Consensus 30 g~~l~~~i~~~~~~~~~~-~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~--~~~~l~LrPt~e~~~t~~~~~~i 106 (255)
T cd00779 30 GLRVLKKIENIIREEMNK-IGAQEILMPILQPAELWKESGRWDAYGPELLRLKDR--HGKEFLLGPTHEEVITDLVANEI 106 (255)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHHhcCCccccCcccEEEecC--CCCeEEEecCCcHHHHHHHHhcc
Confidence 367899999999999987 9999999999977421 1 21 1222 2222 34567785431 2222221
Q ss_pred hh-cC-CCceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 124 MV-SG-FDKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 124 m~-~g-~~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
.. .. --|+||+++|||+| ..+.. |..||+|.|++..+.+.++..+..+.++.
T Consensus 107 ~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~ 163 (255)
T cd00779 107 KSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQ 163 (255)
T ss_pred ccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHH
Confidence 11 11 23899999999999 55555 88999999999988877777776666554
No 55
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.31 E-value=5e-06 Score=86.68 Aligned_cols=104 Identities=21% Similarity=0.310 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---C-CC------ccce-eecccCCCceeeec--CCHHHHHHH
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---E-GA------RDYL-VPSRVQPGTFYALP--QSPQLFKQM 122 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---e-Ga------~~~~-v~~~~~~g~~~~L~--qSpQl~kq~ 122 (452)
..-.+.+..+...+++.|.+ +||.||.||+|...+- . |. .+.+ ... ..|+.+.|+ ..|++....
T Consensus 11 p~~~~~~~~i~~~i~~~f~~-~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d--~~g~~l~LRpD~T~~iaR~~ 87 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFEL-YGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKD--KGGRSLTLRPEGTAPVARAV 87 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCeEecCcccchHHHhhhccCccccccccceEEEEC--CCCCEEeecCCCcHHHHHHH
Confidence 44578899999999999998 9999999999966531 1 11 1122 111 247777785 456666543
Q ss_pred Hhh----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 123 LMV----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 123 Lm~----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
... ...-|+|++++|||.|..+..|.-||+|+++|..+.+
T Consensus 88 ~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 88 IENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred HhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCC
Confidence 211 1135999999999999888888899999999998864
No 56
>PLN02788 phenylalanine-tRNA synthetase
Probab=98.27 E-value=4.3e-06 Score=87.12 Aligned_cols=114 Identities=20% Similarity=0.328 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhcC---CeEEEc--CceEeecCCCCCccc--eeecccCCCcee-----ee--cCCHHHHHHHHhhcCC
Q 043787 63 HKVVKLIRRYLEDVH---GFVEIE--TPVLSRSTPEGARDY--LVPSRVQPGTFY-----AL--PQSPQLFKQMLMVSGF 128 (452)
Q Consensus 63 s~i~~~iR~ff~~~~---gF~EV~--TPiL~~~~~eGa~~~--~v~~~~~~g~~~-----~L--~qSpQl~kq~Lm~~g~ 128 (452)
+.+...|+++|.. . ||.+++ .|+.+...+=++--+ -+|+|.....+| -| ++|+-+..-+ ..+-
T Consensus 71 ~~~~~~i~~~f~~-~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l--~~~~ 147 (402)
T PLN02788 71 GILKNAIYDYFDE-NYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELL--RAGH 147 (402)
T ss_pred HHHHHHHHHHHhh-cccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHHHH--HhCC
Confidence 4456677788876 6 999999 565443222122211 246665444444 12 5777555433 4566
Q ss_pred CceEEEeeeeecCCCCCCCCcceeeeeeeecC--------------CCHHHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQPEFTQLDMELAF--------------TPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--------------~~~~dlm~~~E~li~~i~~ 179 (452)
.|++.+|+|||.|..+++|.|+|.|+|.-+.+ ++..++...+|.+++.+|.
T Consensus 148 ~~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg 212 (402)
T PLN02788 148 THFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFG 212 (402)
T ss_pred CcEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999998886 5678899999999987764
No 57
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=98.27 E-value=9.9e-07 Score=78.56 Aligned_cols=48 Identities=48% Similarity=0.722 Sum_probs=41.3
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchH
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQ 54 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~ 54 (452)
++|++||.+++++|||+| .++|+..++.. ..++++|++|||||||++.
T Consensus 87 ~~~~~El~~~~i~vl~~~-~~lP~~~~~~~----~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 87 PTGEIEVVASELEVLNKA-KTLPFEIDDDV----NVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred CCCcEEEEEeEEEEEECC-CCCCCcccccc----CCCHHHhhhcceeecCCCC
Confidence 468899999999999999 68999886432 4689999999999999975
No 58
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.26 E-value=7.7e-06 Score=85.65 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCC----ccceeecccCCCceeeec--CCHHHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGA----RDYLVPSRVQPGTFYALP--QSPQLFKQM 122 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa----~~~~v~~~~~~g~~~~L~--qSpQl~kq~ 122 (452)
+..-.+.+..+...+|+.|.+ .||.||.||++...+ .+.. .+.+.... ..|+.++|+ ..|+.....
T Consensus 14 ~p~~~~~~~~i~~~i~~~~~~-~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d-~~g~~l~LRpd~T~~~ar~~ 91 (412)
T PRK00037 14 LPEESAKWQYVEDTIREVFER-YGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQD-KGGRSLTLRPEGTAPVVRAV 91 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCeEeeccccchHHHhccccCcccccccceeEEEEc-CCCCEEEecCCCcHHHHHHH
Confidence 344568888999999999988 999999999996543 1111 22221111 247778885 356666544
Q ss_pred Hhhc-CCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 123 LMVS-GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 123 Lm~~-g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
.-.. ..-|+|++++|||+|..+..|.-||+|+++|....+
T Consensus 92 ~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 92 IEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred HhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCC
Confidence 2111 346999999999999888888889999999988764
No 59
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.25 E-value=8.3e-06 Score=82.14 Aligned_cols=117 Identities=22% Similarity=0.313 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEcCceEeecC-CCCCc--cceeecccCCCcee-----ee--cCCHHHHHHHHhhc-CCC
Q 043787 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRST-PEGAR--DYLVPSRVQPGTFY-----AL--PQSPQLFKQMLMVS-GFD 129 (452)
Q Consensus 61 ~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~eGa~--~~~v~~~~~~g~~~-----~L--~qSpQl~kq~Lm~~-g~~ 129 (452)
...++.+.+|++|.. .||.|+.||.+++.. .-.+- +--+|.+.....++ .| +.+|-+-.-+.-.. .--
T Consensus 73 p~~~~~~~ir~~l~~-~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~~vLRtsl~p~ll~~l~~N~~~pi 151 (294)
T TIGR00468 73 PLTRVIDEIRDIFLG-LGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKDRLLLRTHTTAVQLRTMEENEKPPI 151 (294)
T ss_pred HHHHHHHHHHHHHHH-CCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecCCcceecccHHHHHHHHHhcCCCCc
Confidence 346777889999988 999999999998652 11111 00122221111111 24 35576555442222 336
Q ss_pred ceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~ 178 (452)
|+|+||+|||.+..++.|.|||+||+.-+.. +++.++...+|.++..+.
T Consensus 152 rlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~ 202 (294)
T TIGR00468 152 RIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMF 202 (294)
T ss_pred eEEEecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999987666677899999998765 489999999999987554
No 60
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.25 E-value=5.6e-06 Score=87.92 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=43.8
Q ss_pred CCceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 128 FDKYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 128 ~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
--|+|+|++|||+|..+++|.|||.|+|.-.+. +++.+++.+++.+++.+
T Consensus 342 p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~l 393 (492)
T PLN02853 342 PKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSRL 393 (492)
T ss_pred CcEEEeccceecCCCCCcccCccceeEEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 459999999999999999999999999987775 58999998888877653
No 61
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.21 E-value=3.4e-06 Score=83.40 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCCc------cce-eecccCC--CceeeecCCH-----HHHH
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGAR------DYL-VPSRVQP--GTFYALPQSP-----QLFK 120 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa~------~~~-v~~~~~~--g~~~~L~qSp-----Ql~k 120 (452)
-.+++.+|.+.+++.+.. .||.||.||.|.+.+- ++++ +.+ +..+... +..++|.-.. .+++
T Consensus 31 g~~l~~~l~~~~~~~~~~-~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~ 109 (261)
T cd00778 31 GYAIWENIQKILDKEIKE-TGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFS 109 (261)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHH
Confidence 368889999999999988 9999999999987642 2221 222 2221100 1357775432 2222
Q ss_pred HHHhhcC---CCceEEEeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 121 QMLMVSG---FDKYYQIARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 121 q~Lm~~g---~~rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
... .+- --|+||+++|||+|...+ -|-.||+|.|++..+++.++..+.+++++.
T Consensus 110 ~~i-~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~ 169 (261)
T cd00778 110 KWI-RSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILD 169 (261)
T ss_pred hhc-cchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHH
Confidence 221 111 348999999999998764 366899999999999999998888888764
No 62
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=98.20 E-value=1.3e-05 Score=87.63 Aligned_cols=122 Identities=21% Similarity=0.276 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--CCC------ccce-eecccCCCceeeecC-CHH----HHHH
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--EGA------RDYL-VPSRVQPGTFYALPQ-SPQ----LFKQ 121 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--eGa------~~~~-v~~~~~~g~~~~L~q-SpQ----l~kq 121 (452)
-.-.+++.+|.+.+|+.|.+ .||.||.||+|.+..- +++ .+.+ +..+ .++.++|.- +-. ++..
T Consensus 44 P~g~~~~~~i~~~i~~~~~~-~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~--~~~~l~LrPt~e~~~~~~~~~ 120 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNK-IGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDR--HGRDFVLGPTHEEVITDLVRN 120 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEECcccCcHHHHhhcCCccccchhceEEecC--CCCEEEECCCChHHHHHHHHh
Confidence 34578899999999999988 9999999999986531 111 2333 2222 356677853 322 2233
Q ss_pred HHhhc-C-CCceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHH---HHHHHH
Q 043787 122 MLMVS-G-FDKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLI---RKIFLE 180 (452)
Q Consensus 122 ~Lm~~-g-~~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li---~~i~~~ 180 (452)
.+... . --|+|||++|||+| ..+.. |-.||+|.|.|....+.++.....+.++ ..+++.
T Consensus 121 ~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~ 187 (565)
T PRK09194 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDR 187 (565)
T ss_pred hhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 24999999999999 65555 8899999999998887777666555555 666654
No 63
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.18 E-value=1.3e-05 Score=80.84 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC---CC-----ccceeecccCCCceeee-cCCHHHHHHHHh---hc
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE---GA-----RDYLVPSRVQPGTFYAL-PQSPQLFKQMLM---VS 126 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e---Ga-----~~~~v~~~~~~g~~~~L-~qSpQl~kq~Lm---~~ 126 (452)
.+++..|.+.+++.+.. .||.||.||+|...+-- |- .+.+... ..++.++| ++|-..+..+.. .+
T Consensus 30 ~~l~~~l~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~l~LRP~~~~~~~~~~~~~~~s 106 (298)
T cd00771 30 AIIRNELEDFLRELQRK-RGYQEVETPIIYNKELWETSGHWDHYRENMFPFE--EEDEEYGLKPMNCPGHCLIFKSKPRS 106 (298)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEECCeecCHHHHhhCCCccccccCceEec--cCCceEEEcccCCHHHHHHHHhhccc
Confidence 67889999999999988 99999999999776411 21 1222221 13456777 344322222211 11
Q ss_pred --C-CCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHH
Q 043787 127 --G-FDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLI 174 (452)
Q Consensus 127 --g-~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li 174 (452)
. --|+|++++|||.|.+.. .|..||+|.|++.... .++..+.+++++
T Consensus 107 ~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~-~e~~~~e~~e~l 160 (298)
T cd00771 107 YRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCT-PDQIKEEIKGVL 160 (298)
T ss_pred hhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeC-CcchHHHHHHHH
Confidence 1 239999999999997753 4778999999998743 344444433444
No 64
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=98.15 E-value=2.2e-05 Score=85.81 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--CCC------ccce-eecccCCCceeeecCC-H----HHHHH
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--EGA------RDYL-VPSRVQPGTFYALPQS-P----QLFKQ 121 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--eGa------~~~~-v~~~~~~g~~~~L~qS-p----Ql~kq 121 (452)
-.-.+++.+|.+.+|+.|.. .||.||.||+|.+..- +++ .+.+ +..+ .++.++|.-. - .++.+
T Consensus 44 P~g~rv~~~I~~~i~~~~~~-~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr--~~~~l~LrPT~Ee~~t~~~~~ 120 (568)
T TIGR00409 44 PLGLRVLKKVENIVREEMNK-DGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDR--KGREFVLGPTHEEVITDLARN 120 (568)
T ss_pred ChHHHHHHHHHHHHHHHHHH-cCCEEEECCccchHHHHhhcCCCCccchhcEEEecC--CCCEEEEcCCCcHHHHHHHHH
Confidence 34578899999999999988 9999999999988531 111 1333 2233 3566788532 1 22232
Q ss_pred HHhhc-CC-CceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHH---HHHHHHh
Q 043787 122 MLMVS-GF-DKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLI---RKIFLEI 181 (452)
Q Consensus 122 ~Lm~~-g~-~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li---~~i~~~~ 181 (452)
.+... .+ -|+|||++|||+| ..+.. |..||+|.|.|....+.++.....+.|+ ..+|+.+
T Consensus 121 ~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred HHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 22111 12 4999999999999 65555 8899999999999888777776777554 6677554
No 65
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.13 E-value=2e-05 Score=84.74 Aligned_cols=122 Identities=22% Similarity=0.390 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC--------CC--CCcc----ceeec------------cc---C
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST--------PE--GARD----YLVPS------------RV---Q 105 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~--------~e--Ga~~----~~v~~------------~~---~ 105 (452)
+..-+..+..+.+.+|+.|.. .||.||+||++.++- |. .||+ |++.. ++ +
T Consensus 228 ~~~~~~~~~~~~~~~~~~f~~-~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~h 306 (489)
T PRK04172 228 YPGKKHPYREFIDEVRDILVE-MGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVH 306 (489)
T ss_pred CCCCCChHHHHHHHHHHHHHH-CCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHH
Confidence 334466788999999999988 999999999997540 11 1221 11110 00 0
Q ss_pred --------CC----------ceeeec--CCHHHHHHHHh-hcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--C
Q 043787 106 --------PG----------TFYALP--QSPQLFKQMLM-VSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--P 162 (452)
Q Consensus 106 --------~g----------~~~~L~--qSpQl~kq~Lm-~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~ 162 (452)
.| +...|+ .+|.+..-+.- ...--|+|+||+|||+|..+..|.+||+|+++.+++. +
T Consensus 307 e~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~ 386 (489)
T PRK04172 307 EHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVS 386 (489)
T ss_pred hccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCC
Confidence 01 111343 33433332211 1223599999999999988877889999999999995 7
Q ss_pred HHHHHHHHHHHHHHH
Q 043787 163 LDDMLRLNEDLIRKI 177 (452)
Q Consensus 163 ~~dlm~~~E~li~~i 177 (452)
+.+++.++++++..+
T Consensus 387 f~elkg~l~~ll~~l 401 (489)
T PRK04172 387 FRDLLGILKEFYKRL 401 (489)
T ss_pred HHHHHHHHHHHHHHh
Confidence 778888888877643
No 66
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=98.05 E-value=1.9e-05 Score=87.54 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCCc-----cceeecccCCCceeeec-CCHHHHHHHHhhcC-
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGAR-----DYLVPSRVQPGTFYALP-QSPQLFKQMLMVSG- 127 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa~-----~~~v~~~~~~g~~~~L~-qSpQl~kq~Lm~~g- 127 (452)
-.+++..|.+.+++.+.. .||.||.||+|.... ..|-- +.+...+ .++.|+|. ++-.-+..+ ....
T Consensus 273 g~~~~~~i~~~~~~~~~~-~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~--~~~~~~LrP~~~~~~~~~-~~~~~ 348 (639)
T PRK12444 273 GQIIRNELEAFLREIQKE-YNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEV--DNKSFALKPMNCPGHMLM-FKNKL 348 (639)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHhhcCChhhhhhhcCeecC--CCcEEEEccCCCHHHHHH-HhCcc
Confidence 356778899999999988 999999999998764 22311 2222221 35667774 332222222 1211
Q ss_pred ------CCceEEEeeeeecCCCCC--C--CCcceeeeeeeecCCCHHHHHHHHHHHHHHH
Q 043787 128 ------FDKYYQIARCFRDEDLRA--D--RQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 128 ------~~rvfqi~~~FR~E~~~~--~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i 177 (452)
--|+|++++|||.|.+.+ . |..||+|.|++ +|++.+++...+++++..+
T Consensus 349 ~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~~~ 407 (639)
T PRK12444 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMAQI 407 (639)
T ss_pred cChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHHHH
Confidence 249999999999998754 3 77899999999 7888777777755555433
No 67
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=98.05 E-value=4.2e-05 Score=80.98 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CCC------ccceeecccCCCceeeec--CCHHHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EGA------RDYLVPSRVQPGTFYALP--QSPQLFKQM 122 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eGa------~~~~v~~~~~~g~~~~L~--qSpQl~kq~ 122 (452)
+..-...|..+.+.+++.|.. .||.||.||++...+- -|. .+.+.... ..|+.++|+ ..|++..-.
T Consensus 14 lp~~~~~~~~i~~~i~~~~~~-~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d-~~g~~l~LRpd~T~~iaR~~ 91 (430)
T CHL00201 14 LPDEINYWQFIHDKALTLLSL-ANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTD-RSNRDITLRPEGTAGIVRAF 91 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCeeecCcccchHHHHhcccCCcccccccceEEEEc-CCCCEEEeCCCCcHHHHHHH
Confidence 445567899999999999988 9999999999987531 121 12222111 246777885 456655432
Q ss_pred Hhh-----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 123 LMV-----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 123 Lm~-----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
..- ...-|+|++|+|||.|..+..|.-||||+++|..+.
T Consensus 92 ~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~ 135 (430)
T CHL00201 92 IENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGS 135 (430)
T ss_pred HHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECC
Confidence 111 112499999999999999999999999999999986
No 68
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.01 E-value=4.3e-05 Score=79.86 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CC---Ccc-ceeecccCCCceeeec--CCHHHHHHHHh
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EG---ARD-YLVPSRVQPGTFYALP--QSPQLFKQMLM 124 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eG---a~~-~~v~~~~~~g~~~~L~--qSpQl~kq~Lm 124 (452)
+..-.+.|..+...+++.|.. +||.||+||++..... .| ... |...+. ..|+...|+ ..+++-.-...
T Consensus 13 lp~~~~~~~~i~~~l~~~f~~-~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~-~~g~~l~LRpD~T~~iaR~~a~ 90 (391)
T PRK12292 13 LPEEARKIEEIRRRLLDLFRR-WGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQ-LSGRTLGLRPDMTAQIARIAAT 90 (391)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCceeeCcchhhHHHHhccCCccchhhhEEEeec-CCCCEEEECCCCcHHHHHHHHH
Confidence 445567899999999999988 9999999999965321 11 112 222221 146777775 45565553221
Q ss_pred h----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 125 V----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 125 ~----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
- ...-|+|++|+|||.|..+..|.-||+|+++|..+.
T Consensus 91 ~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~ 131 (391)
T PRK12292 91 RLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGD 131 (391)
T ss_pred hccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCC
Confidence 1 113489999999999999888989999999999886
No 69
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=98.01 E-value=3.2e-05 Score=84.08 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC--CCCCcc------ceeecccCCCceeeec-CC-HH---HHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST--PEGARD------YLVPSRVQPGTFYALP-QS-PQ---LFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~--~eGa~~------~~v~~~~~~g~~~~L~-qS-pQ---l~kq~L 123 (452)
.-.++|..+...+|+.+.+ .||.||.||.|.... ..+++. .+... ..++.|+|. .+ |- +|++..
T Consensus 166 ~G~~i~~~L~~~~r~~~~~-~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~--~~~e~~~LrPm~cp~~~~~~~~~~ 242 (545)
T PRK14799 166 KGQTIRNELIAFMREINDS-MGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFN--MEGDEYGVKPMNCPAHILIYKSKP 242 (545)
T ss_pred hHHHHHHHHHHHHHHHHHH-cCCeEEECCccchHHHHhhccccccchhhcceee--ccCceEEeccCCCHHHHHHHhccc
Confidence 3578999999999999988 999999999987654 122221 12221 235667774 22 32 222221
Q ss_pred hhc--CCCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHH
Q 043787 124 MVS--GFDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 124 m~~--g~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~ 179 (452)
.+. ---|+|++|+|||.|.++. .|-.||||.|+.. |++.+++.+.+.+++..+..
T Consensus 243 ~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 243 RTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVE 303 (545)
T ss_pred cChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHH
Confidence 110 1238999999999999987 5888999999997 88888877777666655443
No 70
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.01 E-value=6.3e-05 Score=78.72 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--CCCc-----c-ceeecccCCCceeeec--CCHHHHHHHH
Q 043787 54 QMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--EGAR-----D-YLVPSRVQPGTFYALP--QSPQLFKQML 123 (452)
Q Consensus 54 ~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--eGa~-----~-~~v~~~~~~g~~~~L~--qSpQl~kq~L 123 (452)
.+-.-.+.+..+.+.+++.|.. .||.||+||++..... .+.+ . |...+. ..|+...|+ ..+++-.-..
T Consensus 16 ~lp~e~~~~~~i~~~l~~~f~~-~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~-~~g~~l~LRpD~T~~iaR~~a 93 (392)
T PRK12421 16 VLPEEAQKIERLRRRLLDLFAS-RGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQ-LSGRLMGVRADITPQVARIDA 93 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-cCCEEeeCcchhhHHHHhccCCccchhceEEEEcC-CCCcEEEECCcCCHHHHHHHH
Confidence 3445577889999999999988 9999999999975541 1111 1 111111 136666675 4455555211
Q ss_pred h--h-cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC-CHH---HHHHHHHHHHH
Q 043787 124 M--V-SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT-PLD---DMLRLNEDLIR 175 (452)
Q Consensus 124 m--~-~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~-~~~---dlm~~~E~li~ 175 (452)
. . ...-|+|++|+|||.+..+..|.-||+|+.+|..+. +.. +++.++-+.++
T Consensus 94 ~~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~ 152 (392)
T PRK12421 94 HLLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLR 152 (392)
T ss_pred hhcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHH
Confidence 1 1 124599999999999998888999999999999886 332 45555444443
No 71
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.00 E-value=1.3e-05 Score=79.09 Aligned_cols=97 Identities=23% Similarity=0.269 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--eEEEcCceEeecCCCCCccceeecc---cCCCceeeec--CCH---HHHHHHHhhcC
Q 043787 58 NILLRHKVVKLIRRYLEDVHG--FVEIETPVLSRSTPEGARDYLVPSR---VQPGTFYALP--QSP---QLFKQMLMVSG 127 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~g--F~EV~TPiL~~~~~eGa~~~~v~~~---~~~g~~~~L~--qSp---Ql~kq~Lm~~g 127 (452)
-.+++..|.+.+|+.|.. .| |.||+||+|.+. +.+.... ...+..++|. +.| ..++..+....
T Consensus 31 g~~l~~~i~~~~~~~~~~-~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~ 103 (254)
T cd00774 31 GVELKNNIKSAWRKSFVL-EEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNR 103 (254)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhC
Confidence 368899999999999987 74 999999999875 2221110 0123345563 333 22333322221
Q ss_pred ---CCceEEEeeeeecCCCCC---CCCcceeeeeeeecCC
Q 043787 128 ---FDKYYQIARCFRDEDLRA---DRQPEFTQLDMELAFT 161 (452)
Q Consensus 128 ---~~rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~ 161 (452)
--|+||||+|||+|.+.. .|--||||.|+|.-..
T Consensus 104 ~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~ 143 (254)
T cd00774 104 RKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVD 143 (254)
T ss_pred CCCCchhhhhchhhccccCcccceeeeccchhhheeeeEC
Confidence 248999999999998766 6778999999987653
No 72
>PLN02908 threonyl-tRNA synthetase
Probab=97.99 E-value=3.7e-05 Score=85.90 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-C-CCc------cceeecccCCCceeeec-CCHHHHHHHHhh-
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-E-GAR------DYLVPSRVQPGTFYALP-QSPQLFKQMLMV- 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-e-Ga~------~~~v~~~~~~g~~~~L~-qSpQl~kq~Lm~- 125 (452)
-.-.+++.++.+.+|+.+.. .||.||.||.|.+..- + .++ +.+... ..+..++|. ++-.-+..+...
T Consensus 318 P~g~~i~~~l~~~~~~~~~~-~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~--~~~~~~~Lrp~~~~~~~~~~~~~ 394 (686)
T PLN02908 318 PHGARIYNKLMDFIREQYWE-RGYDEVITPNIYNMDLWETSGHAAHYKENMFVFE--IEKQEFGLKPMNCPGHCLMFAHR 394 (686)
T ss_pred chHHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHHhhcCCccccchhccEEe--cCCeeEEEcCCCcHHHHHHHhcc
Confidence 34578999999999999988 9999999999987641 1 111 122211 134566774 332222222111
Q ss_pred --c---CCCceEEEeeeeecCCCC----CCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 126 --S---GFDKYYQIARCFRDEDLR----ADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 126 --~---g~~rvfqi~~~FR~E~~~----~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
+ ---|+|++++|||+|.+. -.|-.||||.|++. |++.+++.+.+++++..+.
T Consensus 395 ~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~ 455 (686)
T PLN02908 395 VRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLD 455 (686)
T ss_pred ccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHH
Confidence 1 123899999999999884 34668999999987 8888888888877765444
No 73
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.99 E-value=4.3e-05 Score=84.61 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC-----ccceeecccCCCceeeec-CCHHHHHHHHhh
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA-----RDYLVPSRVQPGTFYALP-QSPQLFKQMLMV 125 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa-----~~~~v~~~~~~g~~~~L~-qSpQl~kq~Lm~ 125 (452)
+-.-.+++..+.+.+++.+.. .||.||.||+|...+ ..|. .+.+.... ..|+.++|+ .+...+..+...
T Consensus 266 lp~~~~~~~~i~~~~~~~~~~-~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d-~~~~~~~LRP~~~~~~~r~~~~ 343 (638)
T PRK00413 266 HPKGWTIRRELERYIRRKLRK-AGYQEVKTPQILDRELWETSGHWDHYRENMFPTTE-SDGEEYALKPMNCPGHVQIYKQ 343 (638)
T ss_pred cccHHHHHHHHHHHHHHHHHH-CCCEEEECCeeCCHHHHHhcCChhhhhhccceeec-CCCcEEEEecCCcHHHHHHHhC
Confidence 345578899999999999988 999999999997764 1131 12222111 246778884 232222222111
Q ss_pred ---c--C-CCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHH
Q 043787 126 ---S--G-FDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDM 166 (452)
Q Consensus 126 ---~--g-~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dl 166 (452)
+ . --|+|++|+|||.|.++. .|.-||||.|+|. |.+.+..
T Consensus 344 ~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~-~g~~~~~ 393 (638)
T PRK00413 344 GLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHI-FCTPEQI 393 (638)
T ss_pred cCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEE-EcCHHHH
Confidence 1 1 249999999999998863 3778999999997 4443333
No 74
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.99 E-value=3.9e-05 Score=77.25 Aligned_cols=104 Identities=27% Similarity=0.380 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCCcc-ceeecccCCCceeeec--CCHHHHHHHHhh-
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGARD-YLVPSRVQPGTFYALP--QSPQLFKQMLMV- 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa~~-~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~- 125 (452)
..-.+.+..+.+.+++.|.. +||.+|+||++...+ ++...+ +...+. .|+...|+ ..+++..-+..-
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~-~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~--~G~~l~LR~D~T~~iaR~~a~~~ 83 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFER-HGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDR--SGRVLALRPDLTVPIARYVARNL 83 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECT--TSSEEEE-SSSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCEEEECCeEeecHHhhhccccchhhhEEEEec--CCcEeccCCCCcHHHHHHHHHhc
Confidence 34568889999999999998 999999999998753 111222 222332 57777786 345555544331
Q ss_pred --cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 126 --SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 126 --~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
.-..|+|++|+|||.+.....+.-||+|+.+|..+.+
T Consensus 84 ~~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~ 122 (311)
T PF13393_consen 84 NLPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSS 122 (311)
T ss_dssp GSSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSS
T ss_pred CcCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCC
Confidence 3357899999999999887767789999999999874
No 75
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.97 E-value=3.9e-05 Score=80.95 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc--ccee--ecccCCCceeeecCCHHHHHHHHhhc-----
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR--DYLV--PSRVQPGTFYALPQSPQLFKQMLMVS----- 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~--~~~v--~~~~~~g~~~~L~qSpQl~kq~Lm~~----- 126 (452)
.-.+++.++.+.+++.+.+ .||.||.||.|.+... ++.+ +-+- .+.+ .+..++|.-..+...-.+...
T Consensus 171 ~g~~l~~aL~~~~~~~~~~-~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i-~~~~~~L~pTsE~~~~~~~~~~i~s~ 248 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEK-NGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKL-EDTDLYLIPTAEVPLTNLHRNEILEE 248 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEeCCccccHHHHhhcCccccccccceEe-cCCCEEEEeCCcHHHHHHHhCcCCCh
Confidence 4578899999999999988 9999999999988752 2221 1110 0111 123356744333332222221
Q ss_pred --CCCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 127 --GFDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 127 --g~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
---|+|++++|||+|.+.. -|..||+|.|. .+|++.++..+..+.++...-
T Consensus 249 ~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~~~ 308 (418)
T TIGR00414 249 EELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSDAE 308 (418)
T ss_pred HhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHHHH
Confidence 1358999999999997532 27789999999 788888888888888776543
No 76
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.96 E-value=5.2e-05 Score=76.90 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC---CC---ccce-eecccCCCceeeec--CCHHHHHHHHhh-
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE---GA---RDYL-VPSRVQPGTFYALP--QSPQLFKQMLMV- 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e---Ga---~~~~-v~~~~~~g~~~~L~--qSpQl~kq~Lm~- 125 (452)
..-.+.+..+...+++.|.+ +||.+|+||+|.....- ++ ...+ ..+ ..|+.+.|+ -.|++-.-...-
T Consensus 5 p~~~~~~~~i~~~l~~~~~~-~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d--~~g~~l~LRpD~T~~iaR~~~~~~ 81 (314)
T TIGR00443 5 PEEAARKEEIERQLQDVFRS-WGYQEIITPTLEYLDTLSAGGGILNEDLFKLFD--SLGRVLGLRPDMTTPIARAVSTRL 81 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCeeccCcchhhHHHhcccCCcchhceEEEEC--CCCCEEeecCcCcHHHHHHHHHhc
Confidence 34467889999999999988 99999999999775321 11 1112 222 247778886 355554433211
Q ss_pred ---cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 126 ---SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 126 ---~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
...-|+|++|+|||.|.....|--||+|+++|..+.+
T Consensus 82 ~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~ 121 (314)
T TIGR00443 82 RDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAG 121 (314)
T ss_pred ccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCC
Confidence 1235999999999999988878789999999988763
No 77
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.95 E-value=4e-05 Score=83.90 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC-----ccceeecccCCCceeeec-CCHHHHHHHHhh-
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA-----RDYLVPSRVQPGTFYALP-QSPQLFKQMLMV- 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa-----~~~~v~~~~~~g~~~~L~-qSpQl~kq~Lm~- 125 (452)
-.-.+++..+.+.+++.+.. .||.||.||+|...+ ..|. .+.+.... ..|+.++|+ .+...+..+...
T Consensus 203 p~~~~~~~~l~~~~~~~~~~-~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d-~~~~~~~LRP~~~~~~~~~~~~~ 280 (575)
T PRK12305 203 PKGAIIRREIEDYLRKEHLK-RGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPME-IDEEEYYLKPMNCPGHILIYKSR 280 (575)
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHhhcCCcccchhhcccccc-cCCceEEEecCCCHHHHHHHhcc
Confidence 34578899999999999988 999999999998764 1122 12221111 246677884 333333222111
Q ss_pred --c--C-CCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 126 --S--G-FDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 126 --~--g-~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
+ . --|+|++|+|||+|.+.. .|..||+|.|++. |.+.+...+.+.+++..+.
T Consensus 281 ~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~~ 341 (575)
T PRK12305 281 LRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFVL 341 (575)
T ss_pred cCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHHH
Confidence 1 1 239999999999998753 3668999999995 6566665555455554333
No 78
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.95 E-value=8.3e-05 Score=74.48 Aligned_cols=106 Identities=19% Similarity=0.334 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCC---ccce-eecccCCCceeeec--CCHHHHHHHHhh---
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA---RDYL-VPSRVQPGTFYALP--QSPQLFKQMLMV--- 125 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa---~~~~-v~~~~~~g~~~~L~--qSpQl~kq~Lm~--- 125 (452)
+....+.+..+.+.+++.|.. .||.+|+||++.....-+. .+.+ ..+ ..|+...|+ ..+++-.-...-
T Consensus 15 lp~e~~~~~~i~~~l~~vf~~-~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D--~~g~~l~LRpD~T~~iaR~~a~~~~~ 91 (281)
T PRK12293 15 FGKSAKLKREIENVASEILYE-NGFEEIVTPFFSYHQHQSIADEKELIRFSD--EKNHQISLRADSTLDVVRIVTKRLGR 91 (281)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-cCCeEeeccceeehhhhcccchhceEEEEC--CCCCEEEECCcCCHHHHHHHHHhccc
Confidence 344567889999999999988 9999999999976543211 1222 222 246666775 455555533210
Q ss_pred -cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC-CHHHHHHH
Q 043787 126 -SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT-PLDDMLRL 169 (452)
Q Consensus 126 -~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~-~~~dlm~~ 169 (452)
...-|.|++|+|||.|. .||+|+.+|..+. +..+++.+
T Consensus 92 ~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~l 131 (281)
T PRK12293 92 STEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNI 131 (281)
T ss_pred CCCceeEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHH
Confidence 11349999999999874 5999999999997 44433333
No 79
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=3.1e-05 Score=81.55 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCCccc-eeecc--cCCCceeeec---CCHHH--HH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGARDY-LVPSR--VQPGTFYALP---QSPQL--FK 120 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa~~~-~v~~~--~~~g~~~~L~---qSpQl--~k 120 (452)
+-.-...|..+...+|+-+.. .||.||.||++-... +|..... ...+. ...|+..+|+ ++|=. +.
T Consensus 14 lp~d~~~~~~i~~~~~~v~~~-yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~ 92 (429)
T COG0124 14 LPEDMALREYIESTIRKVFES-YGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVA 92 (429)
T ss_pred ChHHHHHHHHHHHHHHHHHHH-cCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHH
Confidence 334578899999999999988 999999999987654 2221100 00111 1246666775 34421 11
Q ss_pred H-HHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 121 Q-MLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 121 q-~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
+ .+...-.-|.|+++||||.|..++.|.-||+|+++|..+.
T Consensus 93 en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~ 134 (429)
T COG0124 93 ENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGS 134 (429)
T ss_pred hccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCC
Confidence 1 1112234699999999999999999999999999999996
No 80
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.93 E-value=7.4e-05 Score=81.59 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--C-CCc-----cce-eecccCCCceeeec-CCHHHHHHHHhh
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E-GAR-----DYL-VPSRVQPGTFYALP-QSPQLFKQMLMV 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e-Ga~-----~~~-v~~~~~~g~~~~L~-qSpQl~kq~Lm~ 125 (452)
-.-.+++..|.+.+|+.+.. .||.||.||+|....- . |-. +.+ +..+ .|+.++|+ .+-.-+..+..-
T Consensus 197 p~g~~~~~~i~~~~~~~~~~-~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~--~~~~~~LrP~~~~~i~~~~~~ 273 (563)
T TIGR00418 197 PKGATIRNLLEDFVRQKQIK-YGYMEVETPIMYDLELWEISGHWDNYKERMFPFTEL--DNREFMLKPMNCPGHFLIFKS 273 (563)
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHHhcCCcccchhhcceeccC--CCceEEEecCCCHHHHHHHhC
Confidence 34577899999999999988 9999999999986531 1 211 222 2221 35677884 222222222111
Q ss_pred c-----C-CCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHH
Q 043787 126 S-----G-FDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLI 174 (452)
Q Consensus 126 ~-----g-~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li 174 (452)
. . .-|+|++|+|||+|.+.. -|.-||+|.|+|.... .++.....++++
T Consensus 274 ~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i 331 (563)
T TIGR00418 274 SLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQF 331 (563)
T ss_pred cCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHH
Confidence 1 1 349999999999995542 2778999999997665 455555534443
No 81
>PLN02972 Histidyl-tRNA synthetase
Probab=97.91 E-value=9.2e-05 Score=82.65 Aligned_cols=121 Identities=23% Similarity=0.370 Sum_probs=81.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC------CCCcc-ceeecccCCCceeeec--CCHHHHHHH
Q 043787 52 RQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP------EGARD-YLVPSRVQPGTFYALP--QSPQLFKQM 122 (452)
Q Consensus 52 ~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~------eGa~~-~~v~~~~~~g~~~~L~--qSpQl~kq~ 122 (452)
++.+..-...|..+...+++.|.. +||.||+||++...+. +.... |...+ +.|+...|+ -.+++-.-.
T Consensus 334 rD~lP~e~~~re~I~~~L~~vFk~-hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D--~gGr~LaLRPDlTvPiAR~v 410 (763)
T PLN02972 334 RDFAKEQMAIREKAFSIITSVFKR-HGATALDTPVFELRETLMGKYGEDSKLIYDLAD--QGGELCSLRYDLTVPFARYV 410 (763)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH-cCCEEccCCcccchHHhhcccCcchhheEEEEC--CCCCEEEeCCCChHHHHHHH
Confidence 345666788999999999999998 9999999999965421 11111 21222 246666675 334444432
Q ss_pred Hhhc-CCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC-C----HHHHHHHHHHHHH
Q 043787 123 LMVS-GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT-P----LDDMLRLNEDLIR 175 (452)
Q Consensus 123 Lm~~-g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~-~----~~dlm~~~E~li~ 175 (452)
.+.. ..-|.|+||+|||.|.....|.-||+|+++|..+. + --+++.++-+.++
T Consensus 411 A~n~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~ 469 (763)
T PLN02972 411 AMNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLD 469 (763)
T ss_pred HhCCCCcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHH
Confidence 2211 12478889999999998888889999999999885 2 2345555444443
No 82
>PLN02530 histidine-tRNA ligase
Probab=97.88 E-value=0.00011 Score=79.17 Aligned_cols=108 Identities=25% Similarity=0.384 Sum_probs=77.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CCC---ccce-eecccCCCceeeec--CCHHHHHH
Q 043787 52 RQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EGA---RDYL-VPSRVQPGTFYALP--QSPQLFKQ 121 (452)
Q Consensus 52 ~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eGa---~~~~-v~~~~~~g~~~~L~--qSpQl~kq 121 (452)
+..+..-.+.|..+...+++.|.. .||.||+||+|....- .|. .+.+ ..++ .|+...|+ ..|++..-
T Consensus 77 ~D~lp~~~~~~~~i~~~~~~~~~~-~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~--~g~~l~LRpD~T~~iaR~ 153 (487)
T PLN02530 77 RDFPPEDMRLRNWLFDHFREVSRL-FGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDK--GGRRVALRPELTPSLARL 153 (487)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHH-cCCEeccccccchHHHhccccCcccccceEEEECC--CCCEEecCCCCcHHHHHH
Confidence 344566788999999999999998 9999999999987431 121 1122 2222 46666775 34555543
Q ss_pred HHhhc----CCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 122 MLMVS----GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 122 ~Lm~~----g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
..... -.-|.|++|+|||.|.....|.-||+|+++|..+.+
T Consensus 154 ~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~ 198 (487)
T PLN02530 154 VLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVP 198 (487)
T ss_pred HHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCC
Confidence 32111 124899999999999988889899999999998863
No 83
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.86 E-value=5.5e-05 Score=81.11 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCCc------cce-eecccCC--Cceeee-cCC----HHHHH
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGAR------DYL-VPSRVQP--GTFYAL-PQS----PQLFK 120 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa~------~~~-v~~~~~~--g~~~~L-~qS----pQl~k 120 (452)
-.+++..|.+.+++.|.. .||.||.||.|.+.+- ++++ +.+ +...... +..++| |+| -.+|+
T Consensus 43 g~~i~~~i~~~~~~~~~~-~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~ 121 (477)
T PRK08661 43 GYAIWENIQKILDKLFKE-TGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYK 121 (477)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHH
Confidence 478999999999999988 9999999999977642 2221 222 2222100 345777 566 44555
Q ss_pred HHHhhcC---CCceEEEeeeeecCCCCCC---CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 121 QMLMVSG---FDKYYQIARCFRDEDLRAD---RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 121 q~Lm~~g---~~rvfqi~~~FR~E~~~~~---r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
..+ .+- --|+||+++|||+|.+ ++ |-.||+|.|.+..+++.++..+.++.++.
T Consensus 122 ~~i-~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 122 KWI-QSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred hhh-cchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 443 221 2489999999999997 44 77899999999999999998888887774
No 84
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.85 E-value=8.5e-05 Score=78.87 Aligned_cols=116 Identities=17% Similarity=0.168 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC--CC-CC-----ccceeecccCCCceeeec-CC----HHHHHHHHh
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST--PE-GA-----RDYLVPSRVQPGTFYALP-QS----PQLFKQMLM 124 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~--~e-Ga-----~~~~v~~~~~~g~~~~L~-qS----pQl~kq~Lm 124 (452)
-.+++.+|.+.+|+-+.. .||.||.||.|.+.+ -. |- .+.+.... ..++.|+|. +| ..+++....
T Consensus 46 g~~i~~~i~~~i~~~~~~-~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d-~~~~~~~L~Pt~e~~~~~~~~~~~~ 123 (439)
T PRK12325 46 GLKVLKKIENIVREEQNR-AGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKD-RHDREMLYGPTNEEMITDIFRSYVK 123 (439)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHHhhcCCccccchhheEEec-CCCCEEEEcCCCcHHHHHHHHHHhh
Confidence 478899999999999988 999999999998753 11 21 13332211 135667785 34 233333321
Q ss_pred hc--CCCceEEEeeeeecCCCC-CC--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 125 VS--GFDKYYQIARCFRDEDLR-AD--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 125 ~~--g~~rvfqi~~~FR~E~~~-~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
.. ---|+||+++|||+|.+. .. |-.||+|-|++....+.+++.+..++++.
T Consensus 124 syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~ 179 (439)
T PRK12325 124 SYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFV 179 (439)
T ss_pred hchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHH
Confidence 10 136899999999999443 23 77899999999888888877776666554
No 85
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=97.84 E-value=0.00012 Score=77.27 Aligned_cols=118 Identities=24% Similarity=0.370 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC----CCCCc-----c-ceeecccCCCceeeec--CCHHHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST----PEGAR-----D-YLVPSRVQPGTFYALP--QSPQLFKQM 122 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~----~eGa~-----~-~~v~~~~~~g~~~~L~--qSpQl~kq~ 122 (452)
+-.-...+..+.+.+++.|.. +||.||.||+|...+ .-|.. . |...++ .|+...|+ -.+++-.-.
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~-~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~--~g~~l~LRpD~T~~iaR~v 90 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVFER-YGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ--GKRDLALRYDLTIPFAKVV 90 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCEeccccccchHHHHhcccCCCcccccceEEEecC--CCceecccccccHHHHHHH
Confidence 444567889999999999988 999999999997753 10211 1 222222 46666675 334544432
Q ss_pred HhhcC---CCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC-H---HHHHHHHHHHHH
Q 043787 123 LMVSG---FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP-L---DDMLRLNEDLIR 175 (452)
Q Consensus 123 Lm~~g---~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~-~---~dlm~~~E~li~ 175 (452)
..-.. --|.|++|+|||.|.....|.-||+|+++|..+.+ . -+++.++-+.++
T Consensus 91 a~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~ 150 (423)
T PRK12420 91 AMNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFR 150 (423)
T ss_pred HhCcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHH
Confidence 22111 12899999999999888878889999999998862 2 344544444433
No 86
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.79 E-value=0.0001 Score=77.94 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHh-hcCCeEEEcCceEeecCC-CCCc--ccee--ecccCCCceeee-cCCHHHHHHHHhhcC--
Q 043787 57 HNILLRHKVVKLIRRYLE-DVHGFVEIETPVLSRSTP-EGAR--DYLV--PSRVQPGTFYAL-PQSPQLFKQMLMVSG-- 127 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~-~~~gF~EV~TPiL~~~~~-eGa~--~~~v--~~~~~~g~~~~L-~qSpQl~kq~Lm~~g-- 127 (452)
.-.++..++.+.+++.+. + .||.||.||.|.+... ++.+ +-+- .+.+ .+..++| ++|-+ ..-.++...
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~-~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i-~~~~~~L~pTsE~-~l~~l~~~~~~ 244 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEE-HGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKI-EDDDLYLIPTAEV-PLTNLHRDEIL 244 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCEEEeccccccHHHHhhcCccccchhhceEe-cCCCEEEEeCCcH-HHHHHHhcccC
Confidence 456788999999988888 7 9999999999988642 2221 1110 1111 1234556 45522 222222211
Q ss_pred -----CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 128 -----FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 128 -----~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
--|+|++++|||+|.+.. -|..||+|.|.. +|++.++..+..++|+...-
T Consensus 245 s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~~ 306 (425)
T PRK05431 245 DEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANAE 306 (425)
T ss_pred CHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHHH
Confidence 358999999999997542 267899999998 78877888888888776443
No 87
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.78 E-value=7.1e-05 Score=80.18 Aligned_cols=116 Identities=20% Similarity=0.176 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC------ccceeecccCC---Cceeeec-CC-HHHH---HH
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA------RDYLVPSRVQP---GTFYALP-QS-PQLF---KQ 121 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa------~~~~v~~~~~~---g~~~~L~-qS-pQl~---kq 121 (452)
.+++..|...+++-+.+ .||.||.||.|.+.+ -+|. .+.+....... +..++|+ +| |.++ +.
T Consensus 38 ~~i~~~I~~~i~~~~~~-~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~ 116 (472)
T TIGR00408 38 FKIWKNIQKILRNILDE-IGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKK 116 (472)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhc
Confidence 57799999999999988 999999999997754 1232 13332221111 3567774 33 2222 22
Q ss_pred HHhhcC---CCceEEEeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 122 MLMVSG---FDKYYQIARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 122 ~Lm~~g---~~rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
.+ .+- --|+||+++|||+|.+.+ .|-.||+|.|.+..|++.++..+.++.++..
T Consensus 117 ~i-~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~ 176 (472)
T TIGR00408 117 WV-KSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDI 176 (472)
T ss_pred cc-cChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHH
Confidence 21 121 238999999999998764 3668999999999999999988887777653
No 88
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.72 E-value=9.9e-05 Score=74.42 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCC-c-ccee--ecccCCCceeeecCCHHHHHHHHhhc-----
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGA-R-DYLV--PSRVQPGTFYALPQSPQLFKQMLMVS----- 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa-~-~~~v--~~~~~~g~~~~L~qSpQl~kq~Lm~~----- 126 (452)
.-.+++.+|.+.+++.+.+ .||.||.||.|.+..- ++. + +.+- ..+.. +..++|.-..+...-.+++.
T Consensus 50 ~g~~l~~~l~~~~~~~~~~-~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~-~~~~~L~pt~e~~~~~l~~~~~~s~ 127 (297)
T cd00770 50 DGALLERALINFALDFLTK-RGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE-GEDLYLIATAEVPLAALHRDEILEE 127 (297)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCEEEECcccccHHHHhhcCcCccChhcccEec-CCCEEEeecCCHHHHHHHhcccCCH
Confidence 3568899999999999988 9999999999987652 111 1 1100 01111 24456743322222222221
Q ss_pred --CCCceEEEeeeeecCCCC-------CCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 127 --GFDKYYQIARCFRDEDLR-------ADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 127 --g~~rvfqi~~~FR~E~~~-------~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
---|+||+++|||+|.+. --|..||+|.|++ +|.+.++..+..++++..+.
T Consensus 128 ~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~e~~~~~~~~~l~~~~ 187 (297)
T cd00770 128 EELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEESWEELEELISNAE 187 (297)
T ss_pred hhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECchHHHHHHHHHHHHHH
Confidence 135899999999999762 2367899999995 67655777777666665443
No 89
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.70 E-value=0.0003 Score=73.23 Aligned_cols=107 Identities=20% Similarity=0.331 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCC--C--CC--c--cceeecccCCCceeeec--CCHHHHHHHHh--hcCCCc
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E--GA--R--DYLVPSRVQPGTFYALP--QSPQLFKQMLM--VSGFDK 130 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e--Ga--~--~~~v~~~~~~g~~~~L~--qSpQl~kq~Lm--~~g~~r 130 (452)
..+.+.+++.|.. +||.||+||++...+. . |. + -|...+. .|+...|+ ..+++-...+- .....|
T Consensus 8 ~~i~~~i~~~f~~-~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~--~G~~l~LRpD~T~piaR~~~~~~~~~p~R 84 (373)
T PRK12295 8 AAAAEALLASFEA-AGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDE--NGEELCLRPDFTIPVCRRHIATAGGEPAR 84 (373)
T ss_pred HHHHHHHHHHHHH-cCCEEeeCCccccHHHhhhccCchhhcceEEEECC--CCCEEeeCCCCcHHHHHHHHHcCCCCCeE
Confidence 3788889999988 9999999999977542 1 11 1 1222222 46666775 34444443221 123458
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecCC-C-H---HHHHHHHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAFT-P-L---DDMLRLNEDLIR 175 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~-~-~---~dlm~~~E~li~ 175 (452)
+|++++|||.| ..|.-||||+++|..+. + . .+++.++-+.++
T Consensus 85 ~~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~ 131 (373)
T PRK12295 85 YAYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALA 131 (373)
T ss_pred EEEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHH
Confidence 99999999999 34567999999999885 3 2 255555544443
No 90
>PLN02837 threonine-tRNA ligase
Probab=97.67 E-value=0.00021 Score=78.92 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc-------cceeecccCCCceeeecCCHH-----HHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR-------DYLVPSRVQPGTFYALPQSPQ-----LFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~-------~~~v~~~~~~g~~~~L~qSpQ-----l~kq~L 123 (452)
.-.+++.++.+.+++.... +||.+|.||.|.+..- ++.+ +.+.+.. ..+.-|.|+.+.. +|++.+
T Consensus 245 ~G~~l~~~L~~~~~~~~~~-~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~-~~~~~y~l~p~~~p~~~~~~~~~~ 322 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFE-HGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMD-IEDELYQLRPMNCPYHILVYKRKL 322 (614)
T ss_pred hHHHHHHHHHHHHHHHHHH-CCCEEEECCccCCHHHHhhcCCcccchhhcccccC-CCCceEEECCCCcHHHHHHHhCcc
Confidence 3578899999999999988 9999999999987641 2211 2222111 1246677765432 222221
Q ss_pred hh--cCCCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 124 MV--SGFDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 124 m~--~g~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
-. .---|++|+++|||+|.+++ -|-.||+|.|... |++.++..+.++.++..+.
T Consensus 323 ~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~ 382 (614)
T PLN02837 323 HSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTE 382 (614)
T ss_pred CChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHH
Confidence 11 01358999999999998753 3667999999995 9988888888888776544
No 91
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=97.49 E-value=9.6e-05 Score=63.26 Aligned_cols=43 Identities=33% Similarity=0.405 Sum_probs=35.4
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeee
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDL 50 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~Ldl 50 (452)
++|++||.+++++|||+|..++|+...+ ..++++|++|||||+
T Consensus 66 ~~g~~El~~~~~~ils~~~~plP~~~~~------~~~~~~r~~~R~ldl 108 (108)
T cd04322 66 KTGELSIFVKEFTLLSKSLRPLPEKFHG------LTDVETRYRQRYLDL 108 (108)
T ss_pred CCCCEEEEeCEeEEeeccCCCCCCCccC------cCChhheeecccccC
Confidence 4689999999999999986567765432 367899999999996
No 92
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.44 E-value=0.00026 Score=78.05 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCC------c-c-ceeecccCCCceeeec-CC-HHHHH---HH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGA------R-D-YLVPSRVQPGTFYALP-QS-PQLFK---QM 122 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa------~-~-~~v~~~~~~g~~~~L~-qS-pQl~k---q~ 122 (452)
.-.+++.++.+.+++.+.+ .||.+|.||.+...+. ... + + |.+.. .+..|+|. +| |..+. +.
T Consensus 225 ~G~~i~~~L~~~~~~~~~~-~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~---~~e~l~Lrp~~c~~~~~~~~~~ 300 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVE-LGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS---DKKDLMLRFAACFGQFLMLKDM 300 (613)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCEEEECCeecChhHHhhcccccccchhceEecC---CCceEEEecCCCHHHHHHHhCC
Confidence 4578999999999999988 9999999999854421 111 1 2 22211 23456664 22 33332 11
Q ss_pred Hhh--cCCCceEEEee-eeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 043787 123 LMV--SGFDKYYQIAR-CFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180 (452)
Q Consensus 123 Lm~--~g~~rvfqi~~-~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~ 180 (452)
..+ .---|+||+++ |||+|.++. .|-.||||.|+.....+.++.++.+++++..+..-
T Consensus 301 ~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i 365 (613)
T PRK03991 301 TISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILET 365 (613)
T ss_pred cCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 110 01348999999 999998754 26689999999865556899999988888766543
No 93
>PLN02678 seryl-tRNA synthetase
Probab=97.32 E-value=0.00059 Score=72.53 Aligned_cols=118 Identities=17% Similarity=0.349 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCccc--e--eecccC-C-CceeeecCC--H--HHHH-HHHhh
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGARDY--L--VPSRVQ-P-GTFYALPQS--P--QLFK-QMLMV 125 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~~~--~--v~~~~~-~-g~~~~L~qS--p--Ql~k-q~Lm~ 125 (452)
-.+++.++++.+++++.. +||+||.||.|..... +|++-+ + ..+... . ...|.+++| | -+|. +.+--
T Consensus 173 ga~L~~AL~~y~ld~~~~-~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~ 251 (448)
T PLN02678 173 GVLLNQALINFGLAFLRK-RGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDP 251 (448)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCH
Confidence 378999999999999988 9999999999987642 232211 0 011111 1 244555654 2 1222 22111
Q ss_pred c-CCCceEEEeeeeecCCCC----C---CCCcceeeeeeeecCCCHHH--HHHHHHHHHHHH
Q 043787 126 S-GFDKYYQIARCFRDEDLR----A---DRQPEFTQLDMELAFTPLDD--MLRLNEDLIRKI 177 (452)
Q Consensus 126 ~-g~~rvfqi~~~FR~E~~~----~---~r~~EFtqLe~e~~f~~~~d--lm~~~E~li~~i 177 (452)
. ---|++++++|||.|.+. + -|..+|+|+|+ .++.+.++ .....|+|+...
T Consensus 252 ~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~-f~~~~pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 252 KELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQ-FCITSPNGNESWEMHEEMLKNS 312 (448)
T ss_pred HhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEE-EEEECCCchhHHHHHHHHHHHH
Confidence 1 146999999999999873 1 26689999999 56655555 666677766544
No 94
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00046 Score=70.21 Aligned_cols=61 Identities=31% Similarity=0.568 Sum_probs=49.2
Q ss_pred CCH-HHHHHHHhhcCC--CceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHH
Q 043787 114 QSP-QLFKQMLMVSGF--DKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRK 176 (452)
Q Consensus 114 qSp-Ql~kq~Lm~~g~--~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~ 176 (452)
+|. +||+ + .-.|+ .|||.|-+|||||..+++|-+||.|+|--.+.. ++-++|.++++++..
T Consensus 318 vSArmLy~-L-Ak~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~ 383 (483)
T KOG2784|consen 318 VSARMLYR-L-AKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTK 383 (483)
T ss_pred hhHHHHHH-H-HhCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhc
Confidence 344 5554 2 13444 589999999999999999999999999988874 899999999888753
No 95
>PLN02320 seryl-tRNA synthetase
Probab=97.14 E-value=0.001 Score=71.43 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC-CCCCc--ccee---ecccCCCceeeec-CCHH----HHHHHHhh-c
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST-PEGAR--DYLV---PSRVQPGTFYALP-QSPQ----LFKQMLMV-S 126 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~eGa~--~~~v---~~~~~~g~~~~L~-qSpQ----l~kq~Lm~-~ 126 (452)
.++..++++.+++.... +||.||.||.|.... -+|++ +.+. .+.. .+..+||. +|-. +|....+. .
T Consensus 233 a~Le~ALi~f~ld~~~~-~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~i-e~ed~~Li~TaE~Pl~~~~~~~ils~~ 310 (502)
T PLN02320 233 VLLEMALVNWTLSEVMK-KGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSI-DGSDQCLIGTAEIPVGGIHMDSILLES 310 (502)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEECCccchHHHHHhcCCCcccccCceeEE-CCCceEEeecccccccccccccccCHh
Confidence 44667888889998888 999999999998765 23333 1111 1122 23445662 2211 33322211 1
Q ss_pred -CCCceEEEeeeeecCCCCCC-------CCcceeeeeeeecCCCHHHHHHHHHHHHHHHHH
Q 043787 127 -GFDKYYQIARCFRDEDLRAD-------RQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 127 -g~~rvfqi~~~FR~E~~~~~-------r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~ 179 (452)
---||..+++|||.|.+... |..+|+++|. ..|+..++..+..|+|+..+..
T Consensus 311 dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~-~if~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 311 ALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEM-FVICRPEESESFHEELIQIEED 370 (502)
T ss_pred hCCceeEEeccccccccccCCCcCCCceeeeeeecccE-EEEECHHHHHHHHHHHHHHHHH
Confidence 13699999999999977322 6789999998 4678888998888888876554
No 96
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.97 E-value=0.0017 Score=69.45 Aligned_cols=50 Identities=24% Similarity=0.131 Sum_probs=39.5
Q ss_pred CceEEEeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~ 179 (452)
-|+.|+|+|||+|.+.. -|-.||||.|++ .|++.+++.+.+..++..+..
T Consensus 187 lr~aq~g~~~RnE~s~~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~ 239 (456)
T PRK04173 187 FGIAQIGKSFRNEITPRNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKN 239 (456)
T ss_pred eeeeEEchhHhCccCCCCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHH
Confidence 58999999999997752 144699999997 898888888877777755543
No 97
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.93 E-value=0.011 Score=58.93 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc----c--ceeecccCCCceeeec--CCHHHHHHHHhh-
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR----D--YLVPSRVQPGTFYALP--QSPQLFKQMLMV- 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~----~--~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~- 125 (452)
+..+..+..+.+.+++.|.. .||.+|.||++...+. .+.+ + +..-.. ..|+...|+ ..||+-.-...-
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~-~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~-~~Gr~laLRpD~T~~iAR~~a~~~ 81 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNK-ADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQ-HEHQIYALRNDFTDQLLRYYSMYP 81 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCeEeeCCcchhHHhhhccccchhhhheeeeec-CCCCEEEEcCCCCHHHHHHHHhcC
Confidence 44566788899999999988 9999999999965432 1111 1 111111 247777775 567777632110
Q ss_pred cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHH
Q 043787 126 SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLN 170 (452)
Q Consensus 126 ~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~ 170 (452)
.+..|.|.+|+|||.+. +|+|+.+|..+.+.+...+.+
T Consensus 82 ~~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~a~~e~l 119 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE-------AAVQVGIENYAPSLANVQQSF 119 (272)
T ss_pred CCCceEEEeccEeccCC-------CcceeceEEECCCchhHHHHH
Confidence 24569999999999873 389999999985544444444
No 98
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.85 E-value=0.0029 Score=66.93 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHh-h---cCCCceEEEeeeeecCC-CCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 113 PQSPQLFKQMLM-V---SGFDKYYQIARCFRDED-LRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 113 ~qSpQl~kq~Lm-~---~g~~rvfqi~~~FR~E~-~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
++||.+..-+-. + ..--|+|++|+|||.|. .+++|.++|.|+|.-++. +++.+++.+++.|++++
T Consensus 188 HTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 188 HMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred CChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 367766554431 1 24569999999999995 688888999999998887 48999999999999987
No 99
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=96.84 E-value=0.0015 Score=55.40 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhcccee
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCL 48 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~L 48 (452)
.+++||.+++++|||+|. ++|++.+ .++++|++||||
T Consensus 67 ~~~~Ei~~~~i~vl~~a~-~~pi~~~--------~~~~~~~~~rhL 103 (103)
T cd04319 67 PGGAEVHGEKLEIIQNVE-FFPITED--------ASDEFLLDVRHL 103 (103)
T ss_pred CCCEEEEEEEEEEEecCC-CCccCCC--------CCHHHHhhccCC
Confidence 357999999999999985 7887742 489999999997
No 100
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.005 Score=66.20 Aligned_cols=114 Identities=25% Similarity=0.276 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC--CCCC------ccce-eecccCCCceeeec-CCHHHHHHHHhh--
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST--PEGA------RDYL-VPSRVQPGTFYALP-QSPQLFKQMLMV-- 125 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~--~eGa------~~~~-v~~~~~~g~~~~L~-qSpQl~kq~Lm~-- 125 (452)
-++++.+|.+.+|+-|.+ .|..||--|+|+++. -|.. .+.+ +..+ .+..++|. +|=+..--+ +.
T Consensus 46 g~rv~~kI~~iir~em~~-~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~dr--g~~~l~L~PTsEe~it~~-~~~~ 121 (500)
T COG0442 46 GLRVLEKIENIIREEMDK-IGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDR--GDRPLALRPTSEEVITDM-FRKW 121 (500)
T ss_pred HHHHHHHHHHHHHHHHHh-cCceEEechhcCHHHHHHHhChhhhcchhhEEEEcc--CCceeeeCCCcHHHHHHH-HHHH
Confidence 479999999999999988 999999999999843 1222 2444 4444 36677784 443332221 11
Q ss_pred -cC----CCceEEEeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 126 -SG----FDKYYQIARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 126 -~g----~~rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
.. --++|||...||+|..-+ -|--||+|=|.|..+.|.+++.+..+.++.
T Consensus 122 i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~ 179 (500)
T COG0442 122 IRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLD 179 (500)
T ss_pred hhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHH
Confidence 11 358999999999996533 377899999999999999999999888875
No 101
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=96.68 E-value=0.0096 Score=63.18 Aligned_cols=93 Identities=19% Similarity=0.327 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhcC--------CeEEEcC--ceEeecCCCCCccc--eeecccCCCcee-----ee--cCCHHHHHHHHhh
Q 043787 65 VVKLIRRYLEDVH--------GFVEIET--PVLSRSTPEGARDY--LVPSRVQPGTFY-----AL--PQSPQLFKQMLMV 125 (452)
Q Consensus 65 i~~~iR~ff~~~~--------gF~EV~T--PiL~~~~~eGa~~~--~v~~~~~~g~~~-----~L--~qSpQl~kq~Lm~ 125 (452)
+...|.++|.. . ||.-++. |+-+...+=.+-.+ -+|+|.....+| .| ++||-+-.- |-
T Consensus 47 ~~~~I~~~F~~-~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~~~~lLRTHTSa~q~~~--~~ 123 (460)
T TIGR00469 47 IRDLIEKKFNG-ADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYINEQHLLRAHTSAHELEC--FQ 123 (460)
T ss_pred HHHHHHHHHHh-hhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEecCCceeCCCCcHHHHHH--HH
Confidence 34445556654 4 8877776 84332222122222 246665444444 23 578754443 34
Q ss_pred cCCC-------ceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 126 SGFD-------KYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 126 ~g~~-------rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
.+.. ++...|+|||.++.+++|.|.|.|+|.-+.+
T Consensus 124 ~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~ 165 (460)
T TIGR00469 124 GGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIR 165 (460)
T ss_pred hccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEe
Confidence 4432 3899999999999999999999999954444
No 102
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.011 Score=62.23 Aligned_cols=134 Identities=18% Similarity=0.280 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCcccee----ecccCCCceeee-cCCH----HHHHHHHhh-c-
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GARDYLV----PSRVQPGTFYAL-PQSP----QLFKQMLMV-S- 126 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~~~~v----~~~~~~g~~~~L-~qSp----Ql~kq~Lm~-~- 126 (452)
-++--++.+.+=++..+ +||+|+.+|.|...... |++.+.. .++...+ .||| ++|= ++|..-.+. .
T Consensus 174 a~L~rAL~~f~ld~~~~-~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~-~~~LipTaEvpl~~l~~~Eil~~~~ 251 (429)
T COG0172 174 ARLERALIQFMLDLHTK-HGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDP-DLYLIPTAEVPLTNLHRDEILDEED 251 (429)
T ss_pred HHHHHHHHHHHHHHHHH-cCceEeeCceeecHHHhhccCCCCCCcccceEecCC-CEEEEecchhhhHHhhccccccccc
Confidence 34555566666666766 99999999999987644 4432211 1122122 3556 4442 333322222 2
Q ss_pred CCCceEEEeeeeecCCCC----C---CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHH
Q 043787 127 GFDKYYQIARCFRDEDLR----A---DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAE 197 (452)
Q Consensus 127 g~~rvfqi~~~FR~E~~~----~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~e 197 (452)
.--++.-.++|||.|.+. + .|..+|.++|. ..++..++-.+..|.|+...-.-+. .|.-||..+.+..
T Consensus 252 LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~-v~~~~Pe~S~~~~E~m~~~ae~il~--~LeLPyRvv~lct 326 (429)
T COG0172 252 LPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVEL-VVITKPEESEEELEEMLGNAEEVLQ--ELELPYRVVNLCT 326 (429)
T ss_pred CCeeeEEEChhhhcccccccccccceeeeeeeeeEEE-EEEeCcchhHHHHHHHHHHHHHHHH--HhCCCceEeeecc
Confidence 245788899999999655 2 37889999997 5567777777777887765432221 2345788877543
No 103
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=96.60 E-value=0.02 Score=61.59 Aligned_cols=133 Identities=13% Similarity=0.065 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CC-------cc-ceeec-cc-----------------------
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GA-------RD-YLVPS-RV----------------------- 104 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga-------~~-~~v~~-~~----------------------- 104 (452)
..++..++.+.+++...+..||.||-+|.|.+...- +. .+ |.|.. ..
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L 301 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKL 301 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccc
Confidence 356777777777655544369999999999886521 11 11 22310 00
Q ss_pred ---CCCceeeecCCHHHHHHHHhh------cC-CCceEEEe-eeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHH
Q 043787 105 ---QPGTFYALPQSPQLFKQMLMV------SG-FDKYYQIA-RCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLN 170 (452)
Q Consensus 105 ---~~g~~~~L~qSpQl~kq~Lm~------~g-~~rvfqi~-~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~ 170 (452)
.....|+|+-+.+...=.+.+ .. --|++++. +|||.|...+ .|..||+|.|+-. +.+.++..+..
T Consensus 302 ~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~ 380 (520)
T TIGR00415 302 KNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIR 380 (520)
T ss_pred cccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHH
Confidence 011256676554444322222 12 24799955 7999998654 4678999999987 88999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCcee
Q 043787 171 EDLIRKIFLEIKDVQLPNPFPRL 193 (452)
Q Consensus 171 E~li~~i~~~~~~~~l~~pf~ri 193 (452)
++++...- .++ ..|.-||.++
T Consensus 381 e~mle~~~-~~l-~~L~Lpyrv~ 401 (520)
T TIGR00415 381 DKTLELAE-DAA-DELDLEWWTE 401 (520)
T ss_pred HHHHHHHH-HHH-HHcCCCeEEe
Confidence 99886433 222 1233455554
No 104
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=96.56 E-value=0.0034 Score=67.83 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-C--CC----c-c-ceeec-ccC---------------------
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-E--GA----R-D-YLVPS-RVQ--------------------- 105 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-e--Ga----~-~-~~v~~-~~~--------------------- 105 (452)
.-.+++..+.+.+++.+....||.||.||.|.+... + |- . + |.+.. ...
T Consensus 221 ~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~ 300 (517)
T PRK00960 221 PMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEK 300 (517)
T ss_pred hHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccc
Confidence 346778888888887643427999999999987642 1 11 1 1 21210 000
Q ss_pred -----CCceeeecCC--HHHH---HHHHhhcCC---CceEE-EeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHH
Q 043787 106 -----PGTFYALPQS--PQLF---KQMLMVSGF---DKYYQ-IARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLR 168 (452)
Q Consensus 106 -----~g~~~~L~qS--pQl~---kq~Lm~~g~---~rvfq-i~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~ 168 (452)
...-|.|+-+ |-.| .... .+.- -|+++ .|+|||.|...+ .|..||+|.|+- .|++.+++.+
T Consensus 301 ~~~~L~~~~yvLrPa~Cp~~y~~~~~~i-ls~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~e 378 (517)
T PRK00960 301 LKEKLRDPGYVLAPAQCEPFYQFFQGET-VDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEE 378 (517)
T ss_pred cccccccccccccccCcHHHHHHHhCCc-CChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHH
Confidence 0122344322 3222 1111 1111 27999 559999995333 367899999997 8889999999
Q ss_pred HHHHHHHHH
Q 043787 169 LNEDLIRKI 177 (452)
Q Consensus 169 ~~E~li~~i 177 (452)
.+++++.+.
T Consensus 379 e~e~ll~~~ 387 (517)
T PRK00960 379 IRDELLKYA 387 (517)
T ss_pred HHHHHHHHH
Confidence 999998543
No 105
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.015 Score=59.52 Aligned_cols=140 Identities=21% Similarity=0.232 Sum_probs=88.3
Q ss_pred HhhhhccceeeecchHHH----HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCC-----Cccce-eecccC
Q 043787 39 EEIRLRYRCLDLRRQQMN----HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEG-----ARDYL-VPSRVQ 105 (452)
Q Consensus 39 ~~~rl~~r~LdlR~~~~~----~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eG-----a~~~~-v~~~~~ 105 (452)
.++..+.-++.--.+-+- --+|.-.++++.++.-|+. -|=.+|.-|+|++.. ..| +.|++ +-+|
T Consensus 28 q~LL~e~GfI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs-~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr-- 104 (457)
T KOG2324|consen 28 QELLQEVGFIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQS-GGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDR-- 104 (457)
T ss_pred HHHHHHhCccccCCCCceeeccchHHHHHHHHHHHHHHHHh-ccCeeEeecccChHHHHHhcCcccccchhheEeecc--
Confidence 344445555443333222 2356668899999999988 999999999998653 111 23444 4444
Q ss_pred CCceeeecCCHHHHHHHHhhcC--------CCceEEEeeeeecCCC---CCCCCcceeeeeeeecCCCHHHHHHHHHH--
Q 043787 106 PGTFYALPQSPQLFKQMLMVSG--------FDKYYQIARCFRDEDL---RADRQPEFTQLDMELAFTPLDDMLRLNED-- 172 (452)
Q Consensus 106 ~g~~~~L~qSpQl~kq~Lm~~g--------~~rvfqi~~~FR~E~~---~~~r~~EFtqLe~e~~f~~~~dlm~~~E~-- 172 (452)
.|+-|.|+-.-+=-.-.||+.- --|+|||+|=||||-. +--|--||.|=|+|.--.|.+..|+.-+.
T Consensus 105 ~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~ 184 (457)
T KOG2324|consen 105 KGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVD 184 (457)
T ss_pred CCCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHH
Confidence 5778888644433333334432 2489999999999932 23466899999998655678777765433
Q ss_pred -HHHHHHHHh
Q 043787 173 -LIRKIFLEI 181 (452)
Q Consensus 173 -li~~i~~~~ 181 (452)
.-..+|+++
T Consensus 185 ~aY~~iFkqL 194 (457)
T KOG2324|consen 185 QAYDRIFKQL 194 (457)
T ss_pred HHHHHHHHHc
Confidence 233455443
No 106
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=95.49 E-value=0.024 Score=59.18 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC--CCc------cceeecccCCCceeeec--CCHHHHHHH--
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE--GAR------DYLVPSRVQPGTFYALP--QSPQLFKQM-- 122 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e--Ga~------~~~v~~~~~~g~~~~L~--qSpQl~kq~-- 122 (452)
+-...+....|.+.+++.|.. .||..|+||+|...++- +++ -|.+.+. .|+-..|+ -.++.-...
T Consensus 13 Lp~e~~~~~~i~~~l~~~f~~-~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~--~g~~l~LRpD~T~pVaR~~~~ 89 (390)
T COG3705 13 LPLEARRKEEIRDQLLALFRA-WGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDE--TGGRLGLRPDFTIPVARIHAT 89 (390)
T ss_pred chhHHhhHHHHHHHHHHHHHH-hCCccccccccchhhhhhhccchhhhhhheEEecC--CCCeEEecccccHHHHHHHHH
Confidence 334456677888889999988 99999999999987753 211 2333332 35546665 233333322
Q ss_pred HhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 123 Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
.+.++..|+...|++||..+.+..++.||+|+-+|.-+.
T Consensus 90 ~~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~ 128 (390)
T COG3705 90 LLAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGD 128 (390)
T ss_pred hcCCCCceeeecchhhhcchhccCcccchhhhhhHHhCC
Confidence 234567899999999999966666667999999999885
No 107
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=95.45 E-value=0.12 Score=56.75 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCC--C--C---Ccc-ceeecccCCCceeeecCC--HHHHHHHHhh-cC--C
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E--G---ARD-YLVPSRVQPGTFYALPQS--PQLFKQMLMV-SG--F 128 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e--G---a~~-~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~-~g--~ 128 (452)
..++.+.+|++|.. .||.|+-|..+++..- . | ..+ ..+.... ....-+|++| |.+..-+--. .+ -
T Consensus 361 ~~~~~~~ir~~L~~-~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPl-s~e~svLRtsLlpgLL~~~~~N~~~~~~ 438 (552)
T PRK09616 361 IEKLERAIRDLMVG-LGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPI-SEDYTVVRTSLLPSLLEFLSNNKHREYP 438 (552)
T ss_pred HHHHHHHHHHHHHh-CCcceeccceEechHHHHHHhCCCCCCCeEEEcCCC-ccchheEeccchHHHHHHHHhccCCCCC
Confidence 35567789999988 9999999999987621 1 1 101 1111111 1222357766 7776654321 11 1
Q ss_pred CceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIR 175 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~ 175 (452)
-|+|+||+||+.+..+..+-.|+++|.+-+++. ++.++...+|.++.
T Consensus 439 ~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~ 487 (552)
T PRK09616 439 QKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLR 487 (552)
T ss_pred eeEEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 389999999998653333325999999988883 88999998888885
No 108
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=94.78 E-value=0.16 Score=54.43 Aligned_cols=115 Identities=19% Similarity=0.322 Sum_probs=83.5
Q ss_pred cccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccC-----cchHHHHHcCCCCccEEEEecCCCcccc
Q 043787 214 QLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKG-----DIYNEAIKSGAKGLPFLKVLDAGGVEGI 288 (452)
Q Consensus 214 ~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~-----~~~~~~~~~~~~gl~~~~~~~~~~~~~~ 288 (452)
+..|++++|.++..++....++.||.|.++..|+=..-+. .+++.+ ++..+|+.+|.+|+.. .| ++.+
T Consensus 281 ~~~DVTdlF~~TkSkiI~~~l~~gG~V~A~~l~~f~GlvG-~EiqpGrRlGtE~AD~ar~~GvgGlfH----sD-ELP~- 353 (631)
T COG2511 281 EVFDVTDLFANTKSKIIRSGLKKGGKVYAVLLPGFAGLVG-REIQPGRRLGTEFADYARAYGVGGLFH----SD-ELPG- 353 (631)
T ss_pred ccccHHHHhccCchHHHHHhhccCCeEEEEEcCCcccccc-ccccCCcccchHHHHHHHHhCCCcccc----cc-cCcc-
Confidence 3458999999999999999999999999998886322111 122221 2345688899999854 22 1321
Q ss_pred ccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHH
Q 043787 289 PALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHE 339 (452)
Q Consensus 289 ~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~ 339 (452)
--+++++.+++.+++|+.++|-++++|+....+..++-++-..+...
T Consensus 354 ----YGIteeEV~~v~d~lga~~~Davvlva~~~~~~~~a~~~V~~Ra~~a 400 (631)
T COG2511 354 ----YGITEEEVEAVRDALGAGEEDAVVLVAGEEERAKRALEAVIERAKEA 400 (631)
T ss_pred ----CCCCHHHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 23789999999999999999999999999987777776665444433
No 109
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.23 E-value=0.051 Score=59.71 Aligned_cols=118 Identities=25% Similarity=0.291 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCCcc------ceeecccCCCceeeec--CCH---HHHHHHHh
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGARD------YLVPSRVQPGTFYALP--QSP---QLFKQMLM 124 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa~~------~~v~~~~~~g~~~~L~--qSp---Ql~kq~Lm 124 (452)
..+|+.+.+.+|.-... .||.||.||.+.... ..|-.+ |.+.+ .++.|+|. ..| +.|++.+-
T Consensus 220 ~~ir~~le~y~~~~~~~-~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~---~~~~~~lKpmNCpgh~~ifk~~~~ 295 (589)
T COG0441 220 ATIRNLLEDYVRTKLRS-YGYQEVKTPVLADLELWELSGHWDNYKEDMFLTES---DDREYALKPMNCPGHILIFKSGLR 295 (589)
T ss_pred ccHHHHHHHHHHHHHHh-cCceEecCCeeeecccchhccchhhccccceeecc---CChhheeeeccCHhHHHHHhcCCc
Confidence 47899999999999988 999999999997754 223322 11111 12345552 233 34444321
Q ss_pred hc--CCCceEEEeeeeecCCCCCCC----CcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 125 VS--GFDKYYQIARCFRDEDLRADR----QPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 125 ~~--g~~rvfqi~~~FR~E~~~~~r----~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
+- -.-|++++|.|||.|.+++.+ --+|||=|. -.|+..+++.+.+.+.+..+..-.
T Consensus 296 SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDa-Hifc~~dQi~~E~~~~~~~i~~v~ 357 (589)
T COG0441 296 SYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDA-HIFCTPDQIKDEFKGILELILEVY 357 (589)
T ss_pred ceeccchhhhhcceeecccCcchhhccccccceeeccc-ceeccHHHHHHHHHHHHHHHHHHH
Confidence 11 124889999999999998754 369999887 567888899988888887666433
No 110
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=94.16 E-value=0.19 Score=47.40 Aligned_cols=107 Identities=23% Similarity=0.312 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecC-CC----CCcc-ceeecccCCCceeeecCC--HHHHHHHHhh--cC--CCc
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRST-PE----GARD-YLVPSRVQPGTFYALPQS--PQLFKQMLMV--SG--FDK 130 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~e----Ga~~-~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g--~~r 130 (452)
..+.+.+|++|.. .||.||-|..+++.. .. +..+ ..+.... ....-+|++| |.|.+-+.-. .+ --|
T Consensus 3 ~~~~~~ir~~L~~-~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPi-s~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~ 80 (198)
T cd00769 3 QKLERKLRRLLAG-LGFQEVITYSLTSPEEAELFDGGLDEAVELSNPL-SEEYSVLRTSLLPGLLDALARNLNRKNKPLR 80 (198)
T ss_pred hHHHHHHHHHHHH-CCCceeecccCCCHHHHHhccCCCCCeEEEcCCC-chhHHHHHHHHHHHHHHHHHHHhcCCCCCEe
Confidence 3456778999988 999999999997662 11 0101 1111110 1111135555 5655544221 22 348
Q ss_pred eEEEeeeeecCCCCCCCC-cceeeeeeeecC-------------CCHHHHHHHHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQ-PEFTQLDMELAF-------------TPLDDMLRLNEDLIR 175 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f-------------~~~~dlm~~~E~li~ 175 (452)
+|+||+||..+.. . .|.+.|=+-+++ +++.++...+|.++.
T Consensus 81 lFEiG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~ 135 (198)
T cd00769 81 LFEIGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLR 135 (198)
T ss_pred EEEeEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHH
Confidence 9999999976531 3 255555444444 266677777777764
No 111
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.84 E-value=0.31 Score=51.22 Aligned_cols=115 Identities=24% Similarity=0.377 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeec------CCCCCccceeecccCCCceee----ecCCHHHHHHHHhh
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRS------TPEGARDYLVPSRVQPGTFYA----LPQSPQLFKQMLMV 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~------~~eGa~~~~v~~~~~~g~~~~----L~qSpQl~kq~Lm~ 125 (452)
-+-+.+|..+...+++-|.. +|...|+||++.-- -.|.. ...-.-..+.|+-.. |+++=--|. .|.
T Consensus 71 p~qm~lRe~if~~i~~vFkr-hGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLRYDLTVPfARyl--AmN 146 (518)
T KOG1936|consen 71 PEQMALREKIFSTIKEVFKR-HGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLRYDLTVPFARYL--AMN 146 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEeecccccHHHHHH--HHc
Confidence 34578999999999999988 99999999986422 12222 111111122344333 454433332 233
Q ss_pred cCC--CceEEEeeeeecCCCC--CCCCcceeeeeeeecCC-----CHHHHHHHHHHHHH
Q 043787 126 SGF--DKYYQIARCFRDEDLR--ADRQPEFTQLDMELAFT-----PLDDMLRLNEDLIR 175 (452)
Q Consensus 126 ~g~--~rvfqi~~~FR~E~~~--~~r~~EFtqLe~e~~f~-----~~~dlm~~~E~li~ 175 (452)
.. -+-|+||++||-+... ..|--||+|+|+-.++. --.+++..+-+++.
T Consensus 147 -ki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~ 204 (518)
T KOG1936|consen 147 -KITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILS 204 (518)
T ss_pred -ccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHh
Confidence 22 3579999999998764 34568999999999881 23444554444443
No 112
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=90.16 E-value=1.3 Score=52.16 Aligned_cols=118 Identities=23% Similarity=0.279 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEee-cCCCCC--ccceeecccCCCceeeec----CCHHHHHHHHhh-c
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSR-STPEGA--RDYLVPSRVQPGTFYALP----QSPQLFKQMLMV-S 126 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~-~~~eGa--~~~~v~~~~~~g~~~~L~----qSpQl~kq~Lm~-~ 126 (452)
.-.+-.+|+.+...+.+.|.. +|++|++||-+.. +.|.-+ ..+.+-++ .|....|+ +---=|.- +. .
T Consensus 928 ~~~~~~l~~~v~e~~~~ifr~-Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~--sG~~v~Lp~DLr~pfar~vs--~N~~ 1002 (1351)
T KOG1035|consen 928 TEINNELREYVVEEVVKIFRK-HGAIELETPPLSLRNACAYFSRKAVELLDH--SGDVVELPYDLRLPFARYVS--RNSV 1002 (1351)
T ss_pred chhHHHHHHHHHHHHHHHHHH-hcceeccCCccccccccchhccceeeeecC--CCCEEEeeccccchHHHHhh--hchH
Confidence 344567889999999999988 9999999996543 333322 22333332 34433332 11111110 00 0
Q ss_pred CCCceEEEeeeeecCCCCCCCCc-ceeeeeeeecCC----CHHHHHHHHHHHHHHHHHH
Q 043787 127 GFDKYYQIARCFRDEDLRADRQP-EFTQLDMELAFT----PLDDMLRLNEDLIRKIFLE 180 (452)
Q Consensus 127 g~~rvfqi~~~FR~E~~~~~r~~-EFtqLe~e~~f~----~~~dlm~~~E~li~~i~~~ 180 (452)
-.-|-|+|++|||-+. .+ || |++.+++-...- ...+++.++-+++..++.+
T Consensus 1003 ~~~Kry~i~rVyr~~~--~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~ 1058 (1351)
T KOG1035|consen 1003 LSFKRYCISRVYRPAI--HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHE 1058 (1351)
T ss_pred HHHHHhhhheeecccc--cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 1246689999999998 33 86 999999988774 3467777777777766543
No 113
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=89.91 E-value=24 Score=35.79 Aligned_cols=104 Identities=19% Similarity=0.317 Sum_probs=66.8
Q ss_pred cCCeEEEcCceEeecCCC------CC-cc--ceeecccCCCceeeecCCHHHHHHHHhh-cCC---CceEEEeeeeec-C
Q 043787 76 VHGFVEIETPVLSRSTPE------GA-RD--YLVPSRVQPGTFYALPQSPQLFKQMLMV-SGF---DKYYQIARCFRD-E 141 (452)
Q Consensus 76 ~~gF~EV~TPiL~~~~~e------Ga-~~--~~v~~~~~~g~~~~L~qSpQl~kq~Lm~-~g~---~rvfqi~~~FR~-E 141 (452)
+.+.+.|..|+++..... |. ++ |.++. .++..+-.-+|=-=+|.+.+. -|| +-+|+=..+.|. |
T Consensus 18 ~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~--~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE 95 (309)
T cd00645 18 ELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKA--LPDATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDE 95 (309)
T ss_pred HhCeEEecCCeEEecCCCCccCCCCcccceEeecCC--CCCceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCc
Confidence 468999999999765432 21 12 22221 134555567787778777543 233 447777776665 7
Q ss_pred CCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 142 DLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 142 ~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
+.+..|.-=--|-|||..-...+--++.+.+.++.|+..+
T Consensus 96 ~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~i 135 (309)
T cd00645 96 DLDNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAI 135 (309)
T ss_pred ccCccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHH
Confidence 8877777777899999988655555666666666666543
No 114
>PTZ00213 asparagine synthetase A; Provisional
Probab=89.60 E-value=27 Score=35.92 Aligned_cols=123 Identities=16% Similarity=0.319 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHhh----cCCeEEEcCceEeecCCC--C---Ccccee--ecccCCCceeeecCCHHHHHHHHhh-c
Q 043787 59 ILLRHKVVKLIRRYLED----VHGFVEIETPVLSRSTPE--G---ARDYLV--PSRVQPGTFYALPQSPQLFKQMLMV-S 126 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~----~~gF~EV~TPiL~~~~~e--G---a~~~~v--~~~~~~g~~~~L~qSpQl~kq~Lm~-~ 126 (452)
++.....+..++++|.. +.+.+.|..|+++..... . +-+-.| .....++..+-..+|=--+|.+.+. -
T Consensus 8 ~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y 87 (348)
T PTZ00213 8 YIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGEH 87 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHhc
Confidence 34444555556666543 368999999999865422 0 111111 1111134555667887778877544 2
Q ss_pred CC---CceEEEeeeee-cCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 127 GF---DKYYQIARCFR-DEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 127 g~---~rvfqi~~~FR-~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
|| +-+|+=.++.| +|+.+..|.-=--|-|||+.-...+--++.+.+.++.|+..+
T Consensus 88 ~f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~i 146 (348)
T PTZ00213 88 KFPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAI 146 (348)
T ss_pred CCCCCceeeeccccccCCcccCccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHH
Confidence 33 44788666666 577777777777899999998655555666666666665543
No 115
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=87.14 E-value=3.3 Score=45.54 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecC-C-C--CCc--cceeecccCCCceeeecCC--HHHHHHHHhh-cCC--Cc
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRST-P-E--GAR--DYLVPSRVQPGTFYALPQS--PQLFKQMLMV-SGF--DK 130 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~-e--Ga~--~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~-~g~--~r 130 (452)
..++.+.+|++|.. .||.|+-|-.+++.. . + |-. +.....+......=+|++| |.+-+-+--. .+. -|
T Consensus 364 ~~~~~~~ir~~L~~-~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~ 442 (551)
T TIGR00471 364 LNKVSDIIREIMVG-LGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQK 442 (551)
T ss_pred HHHHHHHHHHHHHh-CCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCee
Confidence 45677889999988 999999999998752 1 1 100 1111111001122246666 6665544211 111 37
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIR 175 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~ 175 (452)
+|+||+||...+....+..++.++-+-+++ +++.++...+|.++.
T Consensus 443 lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~ 489 (551)
T TIGR00471 443 IFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALAR 489 (551)
T ss_pred EEEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999996533211244666788777765 488999998888885
No 116
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=87.01 E-value=39 Score=34.64 Aligned_cols=107 Identities=21% Similarity=0.358 Sum_probs=67.9
Q ss_pred HhhcCCeEEEcCceEeecCCC------CC-c--cceeecccCCCceeeecCCHHHHHHHHhh-cCC---CceEEEeeeee
Q 043787 73 LEDVHGFVEIETPVLSRSTPE------GA-R--DYLVPSRVQPGTFYALPQSPQLFKQMLMV-SGF---DKYYQIARCFR 139 (452)
Q Consensus 73 f~~~~gF~EV~TPiL~~~~~e------Ga-~--~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~-~g~---~rvfqi~~~FR 139 (452)
|..+.+.+.|..|+++..... |. + .|.++. .++..+-..+|=-=+|.+.+. -|| +-+|+=..+.|
T Consensus 26 L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~--~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR 103 (327)
T PRK05425 26 LAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKD--LPDATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIR 103 (327)
T ss_pred HHHhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccC--CCCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCcccc
Confidence 333468999999999765422 11 1 122222 134455567887778877544 233 34777777666
Q ss_pred c-CCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 140 D-EDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 140 ~-E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
. |+.+..|.-=--|-|||..-...+--++.+.+.++.|+..+
T Consensus 104 ~dE~ld~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~i 146 (327)
T PRK05425 104 PDEDLDNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAI 146 (327)
T ss_pred CCcccCcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHH
Confidence 5 78788777777899999988655555666666666666543
No 117
>PLN02734 glycyl-tRNA synthetase
Probab=86.55 E-value=0.31 Score=54.41 Aligned_cols=69 Identities=28% Similarity=0.288 Sum_probs=39.2
Q ss_pred ceEEEeeeeecCC-CCC--CCCcceeeeeeeecCCCHHHH----HHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHH
Q 043787 130 KYYQIARCFRDED-LRA--DRQPEFTQLDMELAFTPLDDM----LRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMS 200 (452)
Q Consensus 130 rvfqi~~~FR~E~-~~~--~r~~EFtqLe~e~~f~~~~dl----m~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~ 200 (452)
-+-|||++||||= .|. -|--||||.|+|. |++.++- ...+.++.-.++..-....-..+ .+||..||++
T Consensus 277 ~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~-Fv~P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~-~~~t~~eAv~ 352 (684)
T PLN02734 277 AAAQIGQAFRNEISPRQGLLRVREFTLAEIEH-FVDPEDKSHPKFSEVADLEFLLFPREEQLGGQKA-KPMRLGEAVS 352 (684)
T ss_pred eeeeccHhhhcccCcccceeeechhhhhhhhe-ecCcccccccchhhhhhhhhhcccHhhhhccCCc-ccccHHHHHH
Confidence 4789999999993 333 3778999999986 5544321 22233322222211100000123 4889999887
No 118
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=83.09 E-value=2.2 Score=44.05 Aligned_cols=99 Identities=31% Similarity=0.431 Sum_probs=51.6
Q ss_pred EcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCC-CccChhhhhhceeee
Q 043787 318 AVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPE-DMDDLSSARALAYDM 396 (452)
Q Consensus 318 ~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~e-d~~~~~~v~a~~YDL 396 (452)
+.++.-......|.|...+...+| .+-.-||.++.+|||-|..| |+.- ..+.+... -
T Consensus 215 vvd~~vtf~dLK~~L~~fl~~~fg--------------------~~~~~R~rpsyFPFTePS~Evdv~~-~~~~g~gc-~ 272 (339)
T PRK00488 215 VVDKNISFADLKGTLEDFLKAFFG--------------------EDVKIRFRPSYFPFTEPSAEVDVSC-FKCGGKGC-R 272 (339)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHcC--------------------CCCeEEecCCCCCCCCCceEEEEEE-eccCCCcc-c
Confidence 344444556666666655554443 11134788889999999642 1100 00000000 0
Q ss_pred ee--cCe-EeeccccccccHHHHHHHHHHcCCCHHHHh-hhhhhhh---hhhhcC
Q 043787 397 VY--NGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFI-FAEVVAI---PALSSG 444 (452)
Q Consensus 397 Vl--NG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~-~~f~~~l---~a~~~G 444 (452)
|| .|+ ||+|..+ +--.|++..|++++.+. ++||+=| -.++||
T Consensus 273 ~ck~~~WiEilG~Gm------v~p~vl~~~gid~~~~~G~AfG~GleRlaMl~yg 321 (339)
T PRK00488 273 VCKGTGWLEILGCGM------VHPNVLRNVGIDPEEYSGFAFGMGIERLAMLKYG 321 (339)
T ss_pred ccCCCCceEEeccCc------cCHHHHHHcCCCcccceEEEEeecHHHHHHHHhC
Confidence 22 255 9776554 22457789999998653 4444322 345565
No 119
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=82.91 E-value=0.73 Score=49.20 Aligned_cols=59 Identities=20% Similarity=0.409 Sum_probs=43.2
Q ss_pred cccccccccCcCCCCCCCccChhhhhhceeeeeecCe--EeeccccccccHHHHHHHHHHcCCCHHH-Hhhhhhhhhhhh
Q 043787 365 EQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGV--EIGGGSLRIYKREVQQKVLEIVGISPEQ-FIFAEVVAIPAL 441 (452)
Q Consensus 365 ~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~--EiGGGSiRIh~~elQ~~if~~lg~~~~~-~~~~f~~~l~a~ 441 (452)
.-||.++.+|||.| |...|+-++|- ||||..+ +-..|++..|++++. .-|.||+=|+-+
T Consensus 264 ~~r~~ps~fPfteP------------s~evdi~~~g~WiEi~gcG~------v~p~vl~~~g~~~~~~~g~AfGiGleRl 325 (460)
T TIGR00469 264 KVRWIDAYFPFTAP------------SWEIEIWFKDEWLELCGCGI------IRHDILLRAGVHPSETIGWAFGLGLDRI 325 (460)
T ss_pred eEEEEeccCCCCCc------------ceEEEEEECCeeEEEeeecc------CcHHHHHHcCCCccceEEEEEEecHHHH
Confidence 35899999999998 45678888996 9998775 335678888998875 235555545544
No 120
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.64 E-value=2.5 Score=44.68 Aligned_cols=114 Identities=21% Similarity=0.343 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC---C-----Ccc-ceeecccCCCceeeecCCHHHHHHHH-----
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE---G-----ARD-YLVPSRVQPGTFYALPQSPQLFKQML----- 123 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e---G-----a~~-~~v~~~~~~g~~~~L~qSpQl~kq~L----- 123 (452)
...+-.++++..-+|+.. +||+-+.||.+.+.... | -.+ +.+. .++..-||.-..++-.-.+
T Consensus 184 ~a~LeqALi~yal~~l~~-kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~l---d~~~~~~LiaTaE~plAa~~~~e~ 259 (455)
T KOG2509|consen 184 GAFLEQALINYALDFLNA-KGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVL---DGGDEKYLIATAEQPLAAYHRDEW 259 (455)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCccccCchhhhHHHHHHhccCcCCCcceEEee---cCCccceeEeeccchhhhhhcccc
Confidence 466778889999999988 99999999999876521 1 111 1111 1221223533333222211
Q ss_pred hhc-C-CCceEEEeeeeecCCCCC---C----CCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 124 MVS-G-FDKYYQIARCFRDEDLRA---D----RQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 124 m~~-g-~~rvfqi~~~FR~E~~~~---~----r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
+.- - --||-.+++|||.|-+.+ . |=.+|+-+|.- +..+.++--++.|+||..
T Consensus 260 ~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~F-vit~Pe~S~~~~eEmi~~ 320 (455)
T KOG2509|consen 260 LEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQF-VITGPEDSWEMLEEMINN 320 (455)
T ss_pred cccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEE-EecCcchhHHHHHHHHHH
Confidence 111 1 247888899999996332 1 44799999962 334555555555555543
No 121
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=80.07 E-value=0.98 Score=48.86 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhh-cCCeEEEcCceEeec
Q 043787 59 ILLRHKVVKLIRRYLED-VHGFVEIETPVLSRS 90 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~-~~gF~EV~TPiL~~~ 90 (452)
..+++.|.+.-|++|.- +.+..||+||+|+..
T Consensus 40 ~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~ 72 (539)
T PRK14894 40 VELKNNIIADWWRTNVYERDDMEGLDAAILMNR 72 (539)
T ss_pred HHHHHHHHHHHHHHHeeccCCEEEeeccccCCH
Confidence 46777888888887743 368899999997654
No 122
>PRK07080 hypothetical protein; Validated
Probab=77.41 E-value=3.9 Score=41.68 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=36.0
Q ss_pred ceEEE-eeeeecCCCCC-CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 130 KYYQI-ARCFRDEDLRA-DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 130 rvfqi-~~~FR~E~~~~-~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
++|.+ |.|||.|.+.. +|.-||+|-|+-..+ +.+++.+.-+..+....
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~~~ 202 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRIG-TPEQIVAFRQSWIERGT 202 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEec-CHHHHHHHHHHHHHHHH
Confidence 66654 78999998653 466799999987766 77788888777766543
No 123
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=74.14 E-value=1.2 Score=48.01 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhc-CCeEEEcCceEeec
Q 043787 59 ILLRHKVVKLIRRYLEDV-HGFVEIETPVLSRS 90 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~-~gF~EV~TPiL~~~ 90 (452)
..++..|.++-|++|..+ .+++||+||+|++.
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~ 72 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILPE 72 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCcH
Confidence 367788999999999875 57999999999865
No 124
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=72.70 E-value=18 Score=40.17 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCC--C--C----CccceeecccCCCceeeecCC--HHHHHHHHhh--cC-C
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E--G----ARDYLVPSRVQPGTFYALPQS--PQLFKQMLMV--SG-F 128 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e--G----a~~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g-~ 128 (452)
..++.+.+|+.|.. .||.||-|-.|++... + + ........+-....+=.|++| |.|-+-+... .+ -
T Consensus 399 ~~~~~~~iR~~l~~-~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p 477 (597)
T PLN02265 399 LNQFSDLLRAEVAM-AGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKP 477 (597)
T ss_pred HHHHHHHHHHHHHH-CCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCC
Confidence 46677788999988 9999999999987521 1 0 001111111001122246666 6665543211 11 2
Q ss_pred CceEEEeeeeecCCCCCCCC-cceeeeeeeecCC--CHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT--PLDDMLRLNEDLIR 175 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~--~~~dlm~~~E~li~ 175 (452)
-|+|+||+||-.+.. .... .|-+.|=+-+++. ++.++..+++.++.
T Consensus 478 ~klFEiG~V~~~~~~-~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~ 526 (597)
T PLN02265 478 IKLFEVSDVVLLDES-KDVGARNSRRLAALYCGTTSGFEVIHGLVDRIME 526 (597)
T ss_pred eeEEEeEeEEecCCc-ccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHH
Confidence 489999999955332 2111 2555665555553 78888888888875
No 125
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=71.82 E-value=0.9 Score=49.79 Aligned_cols=32 Identities=19% Similarity=0.495 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeec
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRS 90 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~ 90 (452)
..++..|.+..|++|..+.|+.||+||+|++.
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~ 68 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITPE 68 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCCH
Confidence 57788899999998864488999999999865
No 126
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=64.82 E-value=12 Score=38.50 Aligned_cols=90 Identities=32% Similarity=0.480 Sum_probs=59.1
Q ss_pred EEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeee
Q 043787 317 FAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDM 396 (452)
Q Consensus 317 ~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDL 396 (452)
++.++.-.....+|-|+..+.+..|. +. +=||.+++-|||-|..| .|+
T Consensus 221 lvvd~~~s~~~Lkg~L~~f~~~~fg~-------------------~~-~vRfrpsyFPFTEPS~E------------vdv 268 (335)
T COG0016 221 LVVDKNISFADLKGTLEEFAKKFFGE-------------------DV-KVRFRPSYFPFTEPSAE------------VDV 268 (335)
T ss_pred EEEeCCccHHHHHHHHHHHHHHhcCC-------------------Cc-ceEeecCCCCCCCCeEE------------EEE
Confidence 34466667788999999766664431 10 34788999999999542 344
Q ss_pred ee---cCe-EeeccccccccHHHHHHHHHHcCCCHHHHh-hhhhhh---hhhhhcC
Q 043787 397 VY---NGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFI-FAEVVA---IPALSSG 444 (452)
Q Consensus 397 Vl---NG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~-~~f~~~---l~a~~~G 444 (452)
=+ .|+ ||||=.| +.-.|++.+|++++++. |+||.= |-.++||
T Consensus 269 ~~~~~~~WlEi~G~Gm------v~P~VL~~~G~~~~~~~GfAfGlGlERlAMLkyg 318 (335)
T COG0016 269 YCPGCGGWLEILGCGM------VHPNVLEAVGIDPEEYSGFAFGLGLERLAMLKYG 318 (335)
T ss_pred EEcCCCCEEEEecccc------cCHHHHHhcCCCCCcceEEEEeecHHHHHHHHhC
Confidence 44 446 9988665 23567889999888766 445532 3356666
No 127
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=53.94 E-value=2.3e+02 Score=28.02 Aligned_cols=119 Identities=22% Similarity=0.339 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhh----cCCeEEEcCceEeecCCC------CC-ccceeecccCCCceeeecCCHHHHHHHHhh-cCC--
Q 043787 63 HKVVKLIRRYLED----VHGFVEIETPVLSRSTPE------GA-RDYLVPSRVQPGTFYALPQSPQLFKQMLMV-SGF-- 128 (452)
Q Consensus 63 s~i~~~iR~ff~~----~~gF~EV~TPiL~~~~~e------Ga-~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~-~g~-- 128 (452)
.+.+..++++|.. +.+.+.|..|+++..... |. ++.-......++..+-..||=-=+|.+.+. -|+
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f~~ 86 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGFPP 86 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCCCC
Confidence 4445555555543 469999999999876432 21 121111111234555567887777776544 234
Q ss_pred -CceEEEeeeee-cCC-CCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 129 -DKYYQIARCFR-DED-LRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 129 -~rvfqi~~~FR-~E~-~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
+-+|+=..+-| +|+ .+..|.-=.-|-|||+.-...+--++.+.+.++.|+..+
T Consensus 87 geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~ai 142 (244)
T PF03590_consen 87 GEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAI 142 (244)
T ss_dssp T-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHH
T ss_pred CceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHH
Confidence 47899999999 775 677777789999999998644444555555555555443
No 128
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=52.76 E-value=60 Score=36.91 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCC--HHHHHHHHhh--c--CCCceEEEe
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQS--PQLFKQMLMV--S--GFDKYYQIA 135 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~--g~~rvfqi~ 135 (452)
...+.+.+|+.|.. .||.||-|-.+++..--......+.... ....-+|++| |.|-+-+--. . .--|.|+||
T Consensus 400 ~~~~~~~ir~~L~~-~Gf~Evitysf~s~~~~~~~~i~l~NPi-S~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG 477 (704)
T CHL00192 400 DYNTRDKIRSYLRN-LGLTELIHYSLVKQESFSKNEIKLKNPL-IKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIG 477 (704)
T ss_pred HHHHHHHHHHHHHh-CCCceEecccccChhhcCCCcEEEeCCC-chHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEee
Confidence 34566778999988 9999999999986531111111111111 1122246666 6655543221 1 134799999
Q ss_pred eeeecCCCCCCCCcceeeeeeeec--------------CCCHHHHHHHHHHHHH
Q 043787 136 RCFRDEDLRADRQPEFTQLDMELA--------------FTPLDDMLRLNEDLIR 175 (452)
Q Consensus 136 ~~FR~E~~~~~r~~EFtqLe~e~~--------------f~~~~dlm~~~E~li~ 175 (452)
+||-..... ..|-.++=.-++ -+++.++...+|.++.
T Consensus 478 ~Vf~~~~~~---~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~ 528 (704)
T CHL00192 478 HVFNLDSSS---IIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQ 528 (704)
T ss_pred eeEcCCCcc---ccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHH
Confidence 999442211 112222211111 1378888888888885
No 129
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.44 E-value=22 Score=38.23 Aligned_cols=110 Identities=18% Similarity=0.282 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC-----ccce-eecc---------cCCCceeeecCCHHHHH
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA-----RDYL-VPSR---------VQPGTFYALPQSPQLFK 120 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa-----~~~~-v~~~---------~~~g~~~~L~qSpQl~k 120 (452)
-++-++++..||.=... +||.||-||.|-.+.- .|- .+.| +-.. ..||.-.--..-+--|+
T Consensus 192 ~~iyN~Lv~fir~ey~~-rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~r 270 (560)
T KOG1637|consen 192 TRIYNTLVDFIRAEYRK-RGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYR 270 (560)
T ss_pred chHHHHHHHHHHHHHHh-cCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhhccCccCCCccccccccCCccHh
Confidence 36678888889988888 9999999999987641 121 1222 1110 01222111122233344
Q ss_pred HHHhhcCCCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 121 QMLMVSGFDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 121 q~Lm~~g~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
++ --|.=-+|..-|||-|++ +|-.+|.|=|. -.|++.+++-+.++.++.
T Consensus 271 eL-----PlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDa-HIFCt~~Qi~~Eik~~l~ 323 (560)
T KOG1637|consen 271 EL-----PLRFADFGVLHRNEASGALSGLTRVRRFQQDDA-HIFCTPDQVKEEIKGCLD 323 (560)
T ss_pred hC-----CccccCcceeeeccccccccccceeeeecccCc-eEEecCccHHHHHHHHHH
Confidence 43 235556888999998775 56689999887 457777777777666654
No 130
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=50.57 E-value=68 Score=36.97 Aligned_cols=109 Identities=19% Similarity=0.245 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCC-C--CC-ccce-eecccCCCceeeecCC--HHHHHHHHhh--cCC--Cc
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-E--GA-RDYL-VPSRVQPGTFYALPQS--PQLFKQMLMV--SGF--DK 130 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-e--Ga-~~~~-v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g~--~r 130 (452)
...+.+.+|++|.. .||.||-|-.+++..- . +- .+.. +.... ....=+|++| |.|-.-+... .+. -|
T Consensus 489 ~~~~~~~ir~~L~~-~Gf~Ev~tysf~~~~~~~~~~~~~~~i~l~NPi-s~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~ 566 (791)
T PRK00629 489 AQRLLRRLRRALAA-LGYQEVITYSFVSPEDAKLFGLNPEPLLLLNPI-SEELSVMRTSLLPGLLEAVAYNLNRGNKDVA 566 (791)
T ss_pred HHHHHHHHHHHHHH-CCCcEEeccccCCHHHHHhcCCCCCeEEEeCCC-chHHHHHHHhhHHHHHHHHHHHHhCCCCCEe
Confidence 34556778999988 9999999999976521 1 10 0111 11110 0111136655 5554433211 233 38
Q ss_pred eEEEeeeeecCCCCCCCC-cceeeeeeeecC------------CCHHHHHHHHHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQ-PEFTQLDMELAF------------TPLDDMLRLNEDLIRK 176 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f------------~~~~dlm~~~E~li~~ 176 (452)
.|+||+||...+. . .|-+.|=+-+++ +++.++...+|.++..
T Consensus 567 lFEiG~Vf~~~~~----~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~ 621 (791)
T PRK00629 567 LFEIGRVFLPDGD----LPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEA 621 (791)
T ss_pred EEeeeeeeCCCCC----CCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHH
Confidence 9999999965311 1 144444444443 4788888888888753
No 131
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=49.41 E-value=51 Score=37.98 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCCeEEEcCceEeecC-CC--C--C-c-cceeecccCCCceeeecCC--HHHHHHHHhh--cCCC--ceEE
Q 043787 67 KLIRRYLEDVHGFVEIETPVLSRST-PE--G--A-R-DYLVPSRVQPGTFYALPQS--PQLFKQMLMV--SGFD--KYYQ 133 (452)
Q Consensus 67 ~~iR~ff~~~~gF~EV~TPiL~~~~-~e--G--a-~-~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g~~--rvfq 133 (452)
+.+|++|.. .||.||-|-.+++.. .. + . . ...+.... ....=+|++| |.|-+-+.-. .+.. |.|+
T Consensus 498 ~~~r~~L~~-~Gf~Ev~tysl~s~~~~~~~~~~~~~~~i~l~NPi-s~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFE 575 (798)
T TIGR00472 498 RKLRTLLVG-LGLNEVITYSLVSSEKAEKFNFPKLENLVEIKNPL-SNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFE 575 (798)
T ss_pred HHHHHHHHH-CCCcEEeccccCCHHHHHhhcCCCCCceEEEeCCC-chHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEe
Confidence 578999988 999999999997652 11 0 0 0 11111110 0111136665 6665544222 2333 8999
Q ss_pred EeeeeecCCCCCCCCcceeeeeeeecC-------------CCHHHHHHHHHHHHHH
Q 043787 134 IARCFRDEDLRADRQPEFTQLDMELAF-------------TPLDDMLRLNEDLIRK 176 (452)
Q Consensus 134 i~~~FR~E~~~~~r~~EFtqLe~e~~f-------------~~~~dlm~~~E~li~~ 176 (452)
||+||...+.. -.|-++|=+-+++ +++.++...+|.++..
T Consensus 576 iG~V~~~~~~~---~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~ 628 (798)
T TIGR00472 576 IGKVFAKDGLG---VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLEL 628 (798)
T ss_pred eecccCCCCCC---cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHH
Confidence 99999542211 1144444444443 4788888888888853
No 132
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=47.17 E-value=3.2e+02 Score=28.19 Aligned_cols=122 Identities=16% Similarity=0.316 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHhh----cCCeEEEcCceEeecCCC-----CCcccee--ecccCCCceeeecCCHHHHHHHHhh-c
Q 043787 59 ILLRHKVVKLIRRYLED----VHGFVEIETPVLSRSTPE-----GARDYLV--PSRVQPGTFYALPQSPQLFKQMLMV-S 126 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~----~~gF~EV~TPiL~~~~~e-----Ga~~~~v--~~~~~~g~~~~L~qSpQl~kq~Lm~-~ 126 (452)
++.-...+..++++|.. +.+.+.|..|+++..... .+.+-.| .....++..+-.-+|=-=+|.+.+. -
T Consensus 5 ~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y 84 (330)
T TIGR00669 5 FILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLARH 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHhc
Confidence 33444555566666643 368999999999865432 1112111 1111235556677888788877554 2
Q ss_pred CC---CceEEEeeeeec-CC-CCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 043787 127 GF---DKYYQIARCFRD-ED-LRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180 (452)
Q Consensus 127 g~---~rvfqi~~~FR~-E~-~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~ 180 (452)
|| +-+|+=.++-|. |+ .+..|.-=--|-|||..-...+--++.+.+.++.|+..
T Consensus 85 ~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ 143 (330)
T TIGR00669 85 DFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAA 143 (330)
T ss_pred CCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHH
Confidence 44 357887777775 66 67777767789999998864444455555555555543
No 133
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=42.66 E-value=3.2e+02 Score=27.45 Aligned_cols=140 Identities=23% Similarity=0.354 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCCC-----CCccceee--cccCCCceeeecCCHHHHHHHHhh-cCC---Cce
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-----GARDYLVP--SRVQPGTFYALPQSPQLFKQMLMV-SGF---DKY 131 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-----Ga~~~~v~--~~~~~g~~~~L~qSpQl~kq~Lm~-~g~---~rv 131 (452)
|.+.+.+.+.|.++.|.+||..|+|+..... .+.+--|. ....++..|-.-+|---+|..-++ -|| +-.
T Consensus 13 sfvKn~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGl 92 (330)
T COG2502 13 SFVKNTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGL 92 (330)
T ss_pred HHHHHHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcCCcCCCce
Confidence 4455556666666689999999999875422 11121111 111133334445666666655433 233 467
Q ss_pred EEEeeeeecC-C-CCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhc----------C--CCCCCCCceeeHHH
Q 043787 132 YQIARCFRDE-D-LRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK----------D--VQLPNPFPRLTYAE 197 (452)
Q Consensus 132 fqi~~~FR~E-~-~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~----------~--~~l~~pf~rity~e 197 (452)
|.=.++-|.+ + .+..|.-=--|-|||..--+.+--++.+.+.+..|+..+. + ..+|....=|+-+|
T Consensus 93 ythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~te~av~~~~~~~~~LP~~ItFihsee 172 (330)
T COG2502 93 YTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRETELAVSAEFGLAPFLPDQITFIHSQE 172 (330)
T ss_pred eeechhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccceEEeehHH
Confidence 8888888874 4 4455555667889998876555444555555555544332 1 12333344455666
Q ss_pred HHHHh
Q 043787 198 AMSRY 202 (452)
Q Consensus 198 A~~~~ 202 (452)
..++|
T Consensus 173 L~~ry 177 (330)
T COG2502 173 LVARY 177 (330)
T ss_pred HHHhC
Confidence 66666
No 134
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.50 E-value=7.2 Score=41.84 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST 91 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~ 91 (452)
..+++.|++.-|+.|.-+.+-+||++|+||+..
T Consensus 46 calk~Nil~~WRkhFilEE~MlEvdct~ltP~~ 78 (599)
T KOG2298|consen 46 CALKSNILSLWRKHFILEEDMLEVDCTMLTPEP 78 (599)
T ss_pred hhhHHhHHHHHHHHHhhhhcceeeccCcCCcHH
Confidence 456788888889888887899999999998654
No 135
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=36.30 E-value=15 Score=36.30 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=46.3
Q ss_pred EcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeee
Q 043787 318 AVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMV 397 (452)
Q Consensus 318 ~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLV 397 (452)
++++........|.|...+.+.+|.. . .=|+.++.||||-| |...|+.
T Consensus 132 ~~~~~~~f~~Lk~~l~~l~~~lfG~~----~----------------~~r~~ps~fPfteP------------s~e~~i~ 179 (247)
T PF01409_consen 132 VVDKNVTFEDLKGTLEELLKELFGID----V----------------KVRFRPSYFPFTEP------------SREADIY 179 (247)
T ss_dssp EEETTE-HHHHHHHHHHHHHHHHTTT----E----------------EEEEEECEETTEEE------------EEEEEEE
T ss_pred EEecccchhHHHHHHHHHHHHHhhcc----c----------------ceEeecCCCCcccC------------CeEEEEE
Confidence 34454556677788876555554621 0 12456678999988 4577787
Q ss_pred e------cCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhh
Q 043787 398 Y------NGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEV 435 (452)
Q Consensus 398 l------NG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~ 435 (452)
+ +++||||..+ || -.|++..|++++---|+||
T Consensus 180 ~~~~~~~~wiEvgg~G~-vh-----P~Vl~~~gid~~~~~~A~G 217 (247)
T PF01409_consen 180 CGVCKGGGWIEVGGCGM-VH-----PEVLENWGIDEEYPGFAFG 217 (247)
T ss_dssp EECTTTTCEEEEEEEEE-E------HHHHHHTT--TTSEEEEEE
T ss_pred EeeccCCCceEEeeccc-cc-----HhhhhccCcCccceEEEec
Confidence 7 4459977543 22 3677788998333234454
No 136
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=36.22 E-value=2.2e+02 Score=28.75 Aligned_cols=83 Identities=22% Similarity=0.195 Sum_probs=49.4
Q ss_pred HHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCC
Q 043787 303 LLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPED 382 (452)
Q Consensus 303 l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed 382 (452)
.....++.++|+++.++..-. ....++.++ .|+..| -..+-||+.|-- |
T Consensus 123 ~l~~~~l~~~DvvI~IS~SG~-T~~vi~al~--~Ak~~G------a~tI~IT~~~~s--------------~-------- 171 (299)
T PRK05441 123 DLKAINLTAKDVVVGIAASGR-TPYVIGALE--YARERG------ALTIGISCNPGS--------------P-------- 171 (299)
T ss_pred HHHhcCCCCCCEEEEEeCCCC-CHHHHHHHH--HHHHCC------CeEEEEECCCCC--------------h--------
Confidence 445667889999998865432 223555554 366666 356777766521 1
Q ss_pred ccChhhhhhceeeeee---cCeEeeccccccccHHHHHHHHHHc
Q 043787 383 MDDLSSARALAYDMVY---NGVEIGGGSLRIYKREVQQKVLEIV 423 (452)
Q Consensus 383 ~~~~~~v~a~~YDLVl---NG~EiGGGSiRIh~~elQ~~if~~l 423 (452)
.++.-|+++ .|-|+..||.|..-.--|+.+++.+
T Consensus 172 -------La~~aD~~I~~~~g~E~~~~st~~~s~taqk~iLn~l 208 (299)
T PRK05441 172 -------LSKEADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMI 208 (299)
T ss_pred -------hhHhCCEEEEcCCCCccccccccccchhHHHHHHHHH
Confidence 122334433 2678888888877766676666543
No 137
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=34.50 E-value=28 Score=35.09 Aligned_cols=58 Identities=29% Similarity=0.483 Sum_probs=35.3
Q ss_pred cccccCcCCCCCCCccChhhhhhceeeeee-cCe---EeeccccccccHHHHHHHHHHcCCCHH--HHhhhhhh-hhhhh
Q 043787 369 EALHHPFTAPNPEDMDDLSSARALAYDMVY-NGV---EIGGGSLRIYKREVQQKVLEIVGISPE--QFIFAEVV-AIPAL 441 (452)
Q Consensus 369 ~a~HHPFT~P~~ed~~~~~~v~a~~YDLVl-NG~---EiGGGSiRIh~~elQ~~if~~lg~~~~--~~~~~f~~-~l~a~ 441 (452)
.+..+|||.| +.+.|+.+ +|. ||||-. .|| | .|++.+|++.+ -+-|..++ -|-.+
T Consensus 210 ~~~~~p~~~P------------s~e~~i~~~~g~~w~eiG~~G-~vh-P----~Vl~~~gi~~~~~v~afel~lerl~m~ 271 (294)
T TIGR00468 210 RPSYFPFTEP------------SAEIDVYCWEGKTWLEVLGAG-MFR-P----EVLEPMGIDPTYPGFAWGIGIERLAML 271 (294)
T ss_pred ccCCCCCCCC------------CEEEEEEEeCCCccEEEEEec-cCc-H----HHHHHCCCCCCCeEEEEEeeHHHHHHH
Confidence 3457899976 45678888 787 887433 345 3 56778999873 22222221 24467
Q ss_pred hcC
Q 043787 442 SSG 444 (452)
Q Consensus 442 ~~G 444 (452)
+||
T Consensus 272 ~~~ 274 (294)
T TIGR00468 272 KYG 274 (294)
T ss_pred HhC
Confidence 777
No 138
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=33.23 E-value=99 Score=34.88 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=74.1
Q ss_pred CCHhhhhccceeeecc--hHHHHH----HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC----CCcc-ce-eeccc
Q 043787 37 VKEEIRLRYRCLDLRR--QQMNHN----ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE----GARD-YL-VPSRV 104 (452)
Q Consensus 37 ~~~~~rl~~r~LdlR~--~~~~~~----l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e----Ga~~-~~-v~~~~ 104 (452)
.-||.-+-|-|=.+.. |..... +-..+...+.+|+++.. .||.||-|-.|++.... +..+ .. +....
T Consensus 322 liEEv~r~yGy~ni~~~~p~~~~~~~~~~~~~~~~~r~vr~~l~~-~G~~Evitysl~s~e~~~~~~~~~~~~~~l~NPi 400 (650)
T COG0072 322 LIEEVARIYGYNNIPPELPSAFTIGRGGLTPLQKFRRKVRRALVG-LGFQEVITYSLTSPEEAKLFGLENDEALELANPI 400 (650)
T ss_pred HHHHHHHHhCcccCCCcCCcccccccCCCChHHHHHHHHHHHHHh-CCcceEeeeccCCHHHHHHhccCCCcceEecCCc
Confidence 4466666666655542 222211 33557788889999998 99999999999865311 1111 11 11110
Q ss_pred CCCceeeecCC--HHHHHHHHhh----cCCCceEEEeeeeecCCCCCCC--C----------cceeeeeeeecCCCHHHH
Q 043787 105 QPGTFYALPQS--PQLFKQMLMV----SGFDKYYQIARCFRDEDLRADR--Q----------PEFTQLDMELAFTPLDDM 166 (452)
Q Consensus 105 ~~g~~~~L~qS--pQl~kq~Lm~----~g~~rvfqi~~~FR~E~~~~~r--~----------~EFtqLe~e~~f~~~~dl 166 (452)
....-.|++| |.|-.-+... ..--|+|+||.||-.++..... + .+-|+-. .-+++.++
T Consensus 401 -S~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~~~~w~~~---~~v~f~d~ 476 (650)
T COG0072 401 -SEEYSVLRTSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEEAERETRHLAGLAAGLAGEESWQGK---RPVDFYDA 476 (650)
T ss_pred -chhHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEeeeeEecCCcccchhHHHHHHhhccccccccccC---CCcCHHHH
Confidence 1111235555 4433322111 1235899999999986332111 0 2223222 23577888
Q ss_pred HHHHHHHHHHH
Q 043787 167 LRLNEDLIRKI 177 (452)
Q Consensus 167 m~~~E~li~~i 177 (452)
...++.++..+
T Consensus 477 Kg~ve~ll~~l 487 (650)
T COG0072 477 KGDLEALLEAL 487 (650)
T ss_pred HHHHHHHHHHh
Confidence 88888887654
No 139
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=32.35 E-value=2.7e+02 Score=28.06 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=28.7
Q ss_pred HHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCC
Q 043787 304 LIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPM 358 (452)
Q Consensus 304 ~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPl 358 (452)
.....+.++|++++++..-.. ...++.++ .+++.| -..+.||..|-
T Consensus 119 l~~~~l~~~DvvI~IS~SG~T-~~vi~al~--~Ak~~G------a~tIaIT~~~~ 164 (291)
T TIGR00274 119 LQNIHLTKNDVVVGIAASGRT-PYVIAGLQ--YARSLG------ALTISIACNPK 164 (291)
T ss_pred HHhcCCCCCCEEEEEeCCCCc-HHHHHHHH--HHHHCC------CeEEEEECCCC
Confidence 444578999999988654332 22455553 466666 35677887653
No 140
>PLN02788 phenylalanine-tRNA synthetase
Probab=32.11 E-value=32 Score=36.50 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=33.5
Q ss_pred ccccccCcCCCCCCCccChhhhhhceeeeeecCe--Eeec-cccccccHHHHHHHHHHcCCCHHHHhhhhhhhhh
Q 043787 368 LEALHHPFTAPNPEDMDDLSSARALAYDMVYNGV--EIGG-GSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIP 439 (452)
Q Consensus 368 ~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~--EiGG-GSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~ 439 (452)
|.+..+|||.| +...|+.++|- |++| |-+ | + .+++..|++++ .-|.||+=|+
T Consensus 218 ~~~s~fPft~P------------s~e~dI~~~g~WlEvlG~G~v--h-P----~Vl~~~gi~~~-~g~AfglgLe 272 (402)
T PLN02788 218 WVDAYFPFTNP------------SFELEIFFKGEWLEVLGCGVT--E-Q----EILKNNGRSDN-VAWAFGLGLE 272 (402)
T ss_pred EecCCCCCCCC------------CeEEEEEECCEEEEEeeEEEE--c-H----HHHHHcCCCCC-cEEEEEEeHH
Confidence 44557899977 56788889984 5544 433 3 3 57788899874 2355554455
No 141
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=32.09 E-value=3.1e+02 Score=27.03 Aligned_cols=83 Identities=20% Similarity=0.159 Sum_probs=48.7
Q ss_pred HHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCC
Q 043787 303 LLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPED 382 (452)
Q Consensus 303 l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed 382 (452)
.....++.++|+++..+..-. ....++.++ .|++.| -..+-|+..|--.
T Consensus 110 ~l~a~~l~~~DvvI~IS~SG~-T~~vi~al~--~Ak~~G------a~~I~It~~~~s~---------------------- 158 (257)
T cd05007 110 DLQAINLTERDVVIGIAASGR-TPYVLGALR--YARARG------ALTIGIACNPGSP---------------------- 158 (257)
T ss_pred HHHHcCCCCCCEEEEEeCCCC-CHHHHHHHH--HHHHCC------CeEEEEECCCCCh----------------------
Confidence 444567789999987765432 223555554 466666 3567777666210
Q ss_pred ccChhhhhhceeeeee---cCeEeeccccccccHHHHHHHHHHc
Q 043787 383 MDDLSSARALAYDMVY---NGVEIGGGSLRIYKREVQQKVLEIV 423 (452)
Q Consensus 383 ~~~~~~v~a~~YDLVl---NG~EiGGGSiRIh~~elQ~~if~~l 423 (452)
.++.-|.++ .|-|...||.|.+-.--|+.+++.|
T Consensus 159 -------L~~~aD~~I~~~~g~E~~~~st~~~s~~aqk~vLn~L 195 (257)
T cd05007 159 -------LLQLADIAIALITGPEVVAGSTRLKAGTAQKLALNML 195 (257)
T ss_pred -------hHHhCCEEEEcCCCCccccCccccccHHHHHHHHHHH
Confidence 122223333 2667777777777666677766543
No 142
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.52 E-value=57 Score=25.42 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEc
Q 043787 60 LLRHKVVKLIRRYLEDVHGFVEIE 83 (452)
Q Consensus 60 ~~Rs~i~~~iR~ff~~~~gF~EV~ 83 (452)
+.|.+|++.||+||.. .|=++|-
T Consensus 2 ~kre~i~~~iR~~fs~-lG~I~vL 24 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQ-LGEIAVL 24 (62)
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEE
Confidence 4688999999999987 8866654
No 143
>PF14544 DUF4443: Domain of unknown function (DUF4443); PDB: 2P8T_A.
Probab=31.48 E-value=1.9e+02 Score=25.08 Aligned_cols=56 Identities=27% Similarity=0.238 Sum_probs=29.0
Q ss_pred hHHHHHcCCCCccEEEEecCCCc--cccccccccCChhhHHHHHHHh-CCCCCcEEEEEcCCch
Q 043787 263 YNEAIKSGAKGLPFLKVLDAGGV--EGIPALVSSLGPSNKEQLLIRC-SAGPSDLILFAVGHPA 323 (452)
Q Consensus 263 ~~~~~~~~~~gl~~~~~~~~~~~--~~~~~~~k~l~~~~~~~l~~~~-~~~~gd~~~~~a~~~~ 323 (452)
-.+|.++||+|-..+.+..+... ....++.+ ...+|.+.+ +.++||+|++..+...
T Consensus 31 RDeAIR~GA~GAlIl~~Kngk~vfPed~r~L~~-----~~p~la~~l~~~~egD~IIIt~ae~~ 89 (108)
T PF14544_consen 31 RDEAIRFGACGALILVFKNGKLVFPEDERPLKE-----YYPELAEKLESLSEGDLIIITWAEDP 89 (108)
T ss_dssp HHHHHHTT-SEEEEEEEETTEEE-TTT--BGGG-----T-HHHHHH--S--TT-EEEEEE-SSH
T ss_pred HHHHHHcCCCceEEEEEeCCcEECCCCcchHHH-----HhHHHHHHhhCccCCCEEEEEccCCH
Confidence 45788999999887776544311 11123322 233444444 4689999999887654
No 144
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=30.76 E-value=93 Score=30.55 Aligned_cols=97 Identities=12% Similarity=0.281 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhh---cCCCceEEEeeeee
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMV---SGFDKYYQIARCFR 139 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~---~g~~rvfqi~~~FR 139 (452)
++|-+.+-+||.+ +|...|...-|.+.+ ...-+| ..-+.+.+|..++- ....|+-..-+|.|
T Consensus 2 ~eiR~~fl~FF~~-kgH~~v~s~slvp~d--DptllF------------tnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR 66 (232)
T cd00673 2 SEIRETFLSFFEK-KGHTRVPSSPVVPRD--DPTLLF------------TNAGMNQFKPIFLGEVPPPANRLVNSQKCIR 66 (232)
T ss_pred hHHHHHHHHHHHh-CCCEEeCCCCcCCCC--CCchhe------------eccchhhhhHHhcCCCCCCCCceeeeeecee
Confidence 3566777889988 999988865554211 011112 22334555555421 12468999999999
Q ss_pred cCC----CCCCCC-cceeeeeeeecCCCH--HHHHHHHHHHHH
Q 043787 140 DED----LRADRQ-PEFTQLDMELAFTPL--DDMLRLNEDLIR 175 (452)
Q Consensus 140 ~E~----~~~~r~-~EFtqLe~e~~f~~~--~dlm~~~E~li~ 175 (452)
.-+ ..+.|| .=|.|| --.||-+| ++.+...-+++.
T Consensus 67 ~~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~LT 108 (232)
T cd00673 67 AGDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELLT 108 (232)
T ss_pred cCChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHHH
Confidence 743 335555 678888 34677665 444444444443
No 145
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=30.49 E-value=34 Score=28.45 Aligned_cols=23 Identities=39% Similarity=0.793 Sum_probs=19.2
Q ss_pred hhhhhceeeeeecCeEeeccccc
Q 043787 387 SSARALAYDMVYNGVEIGGGSLR 409 (452)
Q Consensus 387 ~~v~a~~YDLVlNG~EiGGGSiR 409 (452)
..+.+-.|+|-+||.+||.|.++
T Consensus 31 l~~~~~~y~l~~~g~~v~~g~~~ 53 (100)
T smart00769 31 IPVNGLSYDLYLNGVELGSGEIP 53 (100)
T ss_pred cccccEEEEEEECCEEEEEEEcC
Confidence 34567899999999999998763
No 146
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=29.00 E-value=23 Score=17.75 Aligned_cols=9 Identities=44% Similarity=1.173 Sum_probs=6.5
Q ss_pred CeEeecccc
Q 043787 400 GVEIGGGSL 408 (452)
Q Consensus 400 G~EiGGGSi 408 (452)
|++++||.+
T Consensus 1 gf~l~GgGV 9 (10)
T PF08250_consen 1 GFSLGGGGV 9 (10)
T ss_pred CcccccCcC
Confidence 677888764
No 147
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=28.58 E-value=1.1e+02 Score=33.39 Aligned_cols=47 Identities=26% Similarity=0.514 Sum_probs=29.5
Q ss_pred ccccccccCcCCCCCCCccChhhhhhceeeeeecC--eEeeccccccccHHHHHHHHHHcCCCHHH
Q 043787 366 QRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNG--VEIGGGSLRIYKREVQQKVLEIVGISPEQ 429 (452)
Q Consensus 366 ~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG--~EiGGGSiRIh~~elQ~~if~~lg~~~~~ 429 (452)
=||.++..|||-|.-|- ..|-- ..| +||||..| -+ ..|++.+|++ +.
T Consensus 398 ~RfrP~yfPfTEPS~Ei---------~v~~~-~~gkWiEi~g~Gm--~r----pevl~~~Gi~-~~ 446 (492)
T PLN02853 398 LRFKPAYNPYTEPSMEI---------FSYHE-GLKKWVEVGNSGM--FR----PEMLLPMGLP-ED 446 (492)
T ss_pred EEEecCCCCCCCCeEEE---------EEEec-CCCCEEEEecCcC--cC----HHHHHhCCCC-Cc
Confidence 36778899999996431 11211 235 59998765 22 4577888994 44
No 148
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=27.14 E-value=84 Score=34.44 Aligned_cols=47 Identities=30% Similarity=0.468 Sum_probs=30.4
Q ss_pred ceEEEeeeeecCCC-CCCCCcceeeeeeeec--CCCHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDL-RADRQPEFTQLDMELA--FTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 130 rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~--f~~~~dlm~~~E~li~~ 176 (452)
|.|+||+|||.+.. ...|...+.+...-.. -+++.++...+|.++..
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~ 259 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQ 259 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHH
Confidence 89999999988642 2233344444432111 24788899999888864
No 149
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=26.52 E-value=3.9e+02 Score=27.00 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=26.2
Q ss_pred HHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccC
Q 043787 303 LLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFP 357 (452)
Q Consensus 303 l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFP 357 (452)
.....++.+||++++.+..-.. ...++.++ .|++.| -..+=||..|
T Consensus 119 ~l~a~~l~~~DvvI~IS~SG~T-~~vi~al~--~Ak~~G------a~~IaIT~~~ 164 (296)
T PRK12570 119 DLKAIGLTADDVVVGIAASGRT-PYVIGALE--YAKQIG------ATTIALSCNP 164 (296)
T ss_pred HHHHcCCCCCCEEEEEeCCCCC-HHHHHHHH--HHHHCC------CeEEEEECCC
Confidence 3445677899999987654332 12444443 355555 2345556554
No 150
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=26.11 E-value=62 Score=35.47 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=24.4
Q ss_pred ceEEEeeeeecCCCCC---CCCcceeeeeeeecC
Q 043787 130 KYYQIARCFRDEDLRA---DRQPEFTQLDMELAF 160 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f 160 (452)
-+-|||++||||=+-. -|--||||.|+|.-.
T Consensus 189 giaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv 222 (558)
T COG0423 189 GIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFV 222 (558)
T ss_pred EEEeechhhccccCcccceeehhhhhhhheeeEE
Confidence 3899999999995432 366799999998743
No 151
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=25.97 E-value=31 Score=36.42 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=19.2
Q ss_pred CCCeEEEEEccCCCcccchhhh
Q 043787 236 SGGIIKVLCVPSGAKTYSNTAL 257 (452)
Q Consensus 236 ~~~~v~~~~~p~~~~~~s~~~~ 257 (452)
.+.||++++||.++|||+++.-
T Consensus 334 ~~~PVfV~dYP~~iKpFYMr~n 355 (446)
T KOG0554|consen 334 FKKPVFVTDYPKGIKPFYMRLN 355 (446)
T ss_pred cCCCEEEEeccccccceEEEec
Confidence 4689999999999999998654
No 152
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=25.60 E-value=60 Score=36.16 Aligned_cols=69 Identities=9% Similarity=0.141 Sum_probs=37.0
Q ss_pred HhcCCCCCCCCce-eeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccC---CCeEEEEEccCCCcccchh
Q 043787 180 EIKDVQLPNPFPR-LTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKS---GGIIKVLCVPSGAKTYSNT 255 (452)
Q Consensus 180 ~~~~~~l~~pf~r-ity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~---~~~v~~~~~p~~~~~~s~~ 255 (452)
+..|+++..+|.. .+|++|.+.+.....+...+. ++..++ ..+|...+++ ++|+|+++||...+||++.
T Consensus 411 ~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~---~~~~~l----~~l~e~~vE~~l~~~PtFI~dyP~~~sPLak~ 483 (585)
T PTZ00417 411 KLTNTKLEQPFDSPETINKMINLIKENKIEMPNPP---TAAKLL----DQLASHFIENKYPNKPFFIIEHPQIMSPLAKY 483 (585)
T ss_pred HHhCCCccccccccCCHHHHHHHHHHcCCCCCCCC---CHHHHH----HHHHHHHHHHhhCCCcEEEECCChhhCchhhh
Confidence 3445555444544 589998876643221111111 111111 1123333333 3589999999999999863
No 153
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=24.40 E-value=55 Score=29.96 Aligned_cols=22 Identities=27% Similarity=0.598 Sum_probs=19.1
Q ss_pred hceeeeeec-----CeEeecccccccc
Q 043787 391 ALAYDMVYN-----GVEIGGGSLRIYK 412 (452)
Q Consensus 391 a~~YDLVlN-----G~EiGGGSiRIh~ 412 (452)
++++|+.++ |.|||+.+.+-..
T Consensus 154 g~~~~i~~~~~~~~~~eig~~g~~~~~ 180 (211)
T cd00768 154 GPGFEIEVDHPEGRGLEIGSGGYRQDE 180 (211)
T ss_pred CceEEEEEEccCCCeEEEeeceeecCc
Confidence 679999999 9999999887764
No 154
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=21.28 E-value=2.8e+02 Score=26.07 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=37.4
Q ss_pred HhCCCC-CcEEEEEcCCc-hhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccC
Q 043787 306 RCSAGP-SDLILFAVGHP-ASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFP 357 (452)
Q Consensus 306 ~~~~~~-gd~~~~~a~~~-~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFP 357 (452)
..++++ ||+++++.... ..+.++..++|..+....+..-+-...=+|+.||+
T Consensus 19 ~~~~~~~~~~vilv~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~vd~~d~~ 72 (203)
T TIGR01884 19 EIGIKEEGDLVILVKSPIEDGARRAVESLRAIISDLGGNLVEGTIKEIELKDVP 72 (203)
T ss_pred hcCCCccCcEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCcceEEEEecCCHH
Confidence 357787 89999876553 56889999999888776543323345678888875
No 155
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=20.11 E-value=98 Score=34.26 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=23.6
Q ss_pred ceEEEeeeeecCC-CCC--CCCcceeeeeeeec
Q 043787 130 KYYQIARCFRDED-LRA--DRQPEFTQLDMELA 159 (452)
Q Consensus 130 rvfqi~~~FR~E~-~~~--~r~~EFtqLe~e~~ 159 (452)
-+-|||++||||= .|. -|--||+|.|+|.-
T Consensus 185 giaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F 217 (551)
T TIGR00389 185 GVAQIGKSFRNEISPRNGLFRVREFEQAEIEFF 217 (551)
T ss_pred eehhhhHhhhcccCcccceEEeehhhhchhhee
Confidence 4899999999993 222 36679999999863
Done!