Query 043787
Match_columns 452
No_of_seqs 323 out of 2079
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ah6_A Aspartate--tRNA ligase, 100.0 1E-116 4E-121 947.9 36.4 431 1-451 95-539 (617)
2 1l0w_A Aspartyl-tRNA synthetas 100.0 4E-105 1E-109 858.8 42.9 432 1-451 85-522 (580)
3 1c0a_A Aspartyl tRNA synthetas 100.0 5E-104 2E-108 852.2 40.7 432 1-451 87-528 (585)
4 1e1o_A Lysyl-tRNA synthetase, 100.0 3.5E-68 1.2E-72 563.6 28.2 324 2-451 131-471 (504)
5 3a74_A Lysyl-tRNA synthetase; 100.0 7.3E-67 2.5E-71 552.5 29.8 323 2-451 122-461 (493)
6 1eov_A ASPRS, aspartyl-tRNA sy 100.0 3.4E-66 1.2E-70 547.2 31.4 307 2-451 113-452 (487)
7 2xgt_A Asparaginyl-tRNA synthe 100.0 1E-66 3.5E-71 544.8 25.7 301 2-451 80-400 (435)
8 1n9w_A Aspartyl-tRNA synthetas 100.0 2.8E-66 9.6E-71 539.2 24.7 300 3-451 72-387 (422)
9 1wyd_A Hypothetical aspartyl-t 100.0 3.8E-65 1.3E-69 531.7 29.0 297 3-451 82-394 (429)
10 3nem_A Aspartyl-tRNA synthetas 100.0 1.8E-63 6E-68 519.8 32.7 303 3-451 85-403 (438)
11 1x54_A Asparaginyl-tRNA synthe 100.0 1E-63 3.5E-68 521.8 25.8 292 3-451 85-399 (434)
12 3bju_A Lysyl-tRNA synthetase; 100.0 8.8E-63 3E-67 524.4 31.5 324 2-451 124-476 (521)
13 3m4p_A Ehasnrs, asparaginyl-tR 100.0 4.2E-63 1.4E-67 519.3 24.5 298 2-451 104-421 (456)
14 3i7f_A Aspartyl-tRNA synthetas 100.0 5E-62 1.7E-66 518.0 27.9 307 2-451 136-513 (548)
15 4ex5_A Lysine--tRNA ligase; st 100.0 3.4E-60 1.2E-64 503.1 30.0 323 2-451 152-496 (529)
16 3a5y_A GENX, putative lysyl-tR 100.0 4E-59 1.4E-63 473.8 23.1 274 49-451 27-314 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 7.4E-52 2.5E-56 412.6 23.2 239 44-451 1-258 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.9 1.8E-24 6.2E-29 214.6 4.9 163 2-176 23-205 (290)
19 12as_A Asparagine synthetase; 99.3 9.1E-11 3.1E-15 115.7 20.5 145 58-203 4-178 (330)
20 1b7y_A Phers, protein (phenyla 99.0 3.2E-09 1.1E-13 107.6 13.4 114 62-178 103-245 (350)
21 2rhq_A Phenylalanyl-tRNA synth 98.9 3E-09 1E-13 105.4 11.3 115 61-178 54-184 (294)
22 3dsq_A Pyrrolysyl-tRNA synthet 98.7 4.6E-08 1.6E-12 96.7 10.4 110 63-176 74-201 (288)
23 2dq3_A Seryl-tRNA synthetase; 98.5 1.3E-07 4.5E-12 98.2 8.2 117 56-178 169-307 (425)
24 2i4l_A Proline-tRNA ligase; al 98.5 3.3E-07 1.1E-11 96.0 10.9 123 55-180 63-207 (458)
25 1evl_A Threonyl-tRNA synthetas 98.5 3.1E-07 1E-11 94.4 10.2 115 57-175 28-161 (401)
26 1z7m_A ATP phosphoribosyltrans 98.4 3.6E-06 1.2E-10 85.1 14.4 106 55-163 32-152 (344)
27 1wu7_A Histidyl-tRNA synthetas 98.3 3.6E-06 1.2E-10 87.2 13.8 121 57-180 18-151 (434)
28 2j3l_A Prolyl-tRNA synthetase; 98.3 3.5E-06 1.2E-10 90.4 12.7 122 55-179 43-186 (572)
29 1htt_A Histidyl-tRNA synthetas 98.3 4.6E-06 1.6E-10 86.0 12.8 122 57-181 16-154 (423)
30 3uh0_A Threonyl-tRNA synthetas 98.3 2.6E-06 8.8E-11 89.4 10.9 119 57-178 62-202 (460)
31 1nyr_A Threonyl-tRNA synthetas 98.3 3.4E-06 1.1E-10 92.0 11.8 116 56-175 268-404 (645)
32 1qe0_A Histidyl-tRNA synthetas 98.3 2.4E-06 8.3E-11 87.9 10.0 103 57-162 14-135 (420)
33 1h4v_B Histidyl-tRNA synthetas 98.3 4.9E-06 1.7E-10 85.7 12.2 121 57-180 15-153 (421)
34 3pco_A Phenylalanyl-tRNA synth 98.3 1.2E-06 3.9E-11 88.0 7.2 114 62-179 109-236 (327)
35 1hc7_A Prolyl-tRNA synthetase; 98.2 6.6E-06 2.3E-10 86.6 13.2 128 56-184 41-192 (477)
36 3od1_A ATP phosphoribosyltrans 98.2 7.6E-06 2.6E-10 84.3 12.7 103 57-162 22-137 (400)
37 3rac_A Histidine-tRNA ligase; 98.2 1.2E-05 4.3E-10 82.0 13.6 103 57-162 35-157 (373)
38 4e51_A Histidine--tRNA ligase; 98.2 7.1E-06 2.4E-10 86.1 12.0 105 55-162 42-164 (467)
39 4hvc_A Bifunctional glutamate/ 98.2 1.1E-05 3.9E-10 85.6 12.8 120 56-176 58-199 (519)
40 1nj8_A Proline-tRNA synthetase 98.2 8.1E-06 2.8E-10 85.5 11.4 118 57-175 36-176 (459)
41 2dq0_A Seryl-tRNA synthetase; 98.1 4.9E-06 1.7E-10 87.1 9.0 118 57-178 191-328 (455)
42 3lc0_A Histidyl-tRNA synthetas 98.1 1.5E-05 5E-10 83.5 12.6 104 55-162 39-157 (456)
43 1qf6_A THRRS, threonyl-tRNA sy 98.1 5.6E-06 1.9E-10 90.2 9.7 116 56-176 268-403 (642)
44 3net_A Histidyl-tRNA synthetas 98.1 7E-06 2.4E-10 86.1 9.8 105 56-161 23-153 (465)
45 3ial_A Prolyl-tRNA synthetase; 98.1 1.1E-05 3.9E-10 85.5 10.2 119 56-175 52-192 (518)
46 1ses_A Seryl-tRNA synthetase; 98.0 2.3E-05 7.9E-10 81.3 12.1 118 58-177 165-302 (421)
47 3err_A Fusion protein of micro 98.0 2.1E-05 7.3E-10 83.8 11.0 114 57-177 273-411 (536)
48 3a32_A Probable threonyl-tRNA 98.0 2.2E-05 7.5E-10 82.4 10.6 123 58-184 48-195 (471)
49 3l4g_A Phenylalanyl-tRNA synth 98.0 3.3E-05 1.1E-09 81.6 11.6 116 60-176 225-397 (508)
50 1ati_A Glycyl-tRNA synthetase; 98.0 3.8E-05 1.3E-09 81.4 11.9 48 129-177 210-260 (505)
51 1nj1_A PROR, proline-tRNA synt 97.9 2.1E-05 7.1E-10 83.3 9.7 119 56-176 68-209 (501)
52 3lss_A Seryl-tRNA synthetase; 97.9 1.5E-05 5.2E-10 83.8 8.0 115 57-177 206-346 (484)
53 1wle_A Seryl-tRNA synthetase; 97.9 5E-05 1.7E-09 80.3 11.7 121 56-178 216-359 (501)
54 4g84_A Histidine--tRNA ligase, 97.9 7.8E-05 2.7E-09 77.5 12.8 103 55-161 24-139 (464)
55 3qne_A Seryl-tRNA synthetase, 97.9 3.3E-05 1.1E-09 81.2 9.8 115 57-177 183-323 (485)
56 3vbb_A Seryl-tRNA synthetase, 97.9 3.9E-05 1.3E-09 81.2 10.3 118 57-177 199-348 (522)
57 4g85_A Histidine-tRNA ligase, 97.8 9.8E-05 3.3E-09 78.2 12.8 105 54-161 76-192 (517)
58 2cja_A Seryl-tRNA synthetase; 97.7 3.6E-05 1.2E-09 81.7 7.2 116 56-174 228-393 (522)
59 1usy_A ATP phosphoribosyltrans 97.7 0.00011 3.7E-09 71.8 9.4 89 66-162 7-101 (275)
60 3mf2_A BLL0957 protein; aminoa 97.5 0.00028 9.7E-09 70.9 8.8 119 58-179 63-219 (346)
61 2odr_B Phosphoseryl-tRNA synth 97.4 0.00014 4.9E-09 78.0 5.5 67 111-177 201-276 (648)
62 2odr_A Phosphoseryl-tRNA synth 97.3 0.00015 5.2E-09 77.9 5.5 67 111-177 201-276 (665)
63 2odr_D Phosphoseryl-tRNA synth 97.3 0.00016 5.5E-09 77.8 5.5 67 111-177 201-276 (685)
64 2odr_C Phosphoseryl-tRNA synth 97.3 0.00018 6E-09 77.7 5.5 67 111-177 201-276 (701)
65 3cmq_A Phenylalanyl-tRNA synth 97.3 0.00037 1.3E-08 72.1 7.3 94 63-159 51-163 (415)
66 2du7_A O-phosphoseryl-tRNA syn 97.3 0.00018 6.2E-09 76.4 4.9 67 111-177 194-269 (549)
67 2du3_A O-phosphoseryl-tRNA syn 97.2 0.0009 3.1E-08 71.0 9.2 67 111-177 182-257 (534)
68 2zt5_A Glycyl-tRNA synthetase; 97.1 0.0016 5.3E-08 71.6 10.5 35 56-90 98-132 (693)
69 3ikl_A DNA polymerase subunit 96.7 0.0045 1.5E-07 64.6 9.3 111 58-178 103-228 (459)
70 1g5h_A Mitochondrial DNA polym 96.6 0.0085 2.9E-07 62.5 10.3 120 58-179 61-219 (454)
71 2rhq_B Phenylalanyl-tRNA synth 96.3 0.034 1.2E-06 61.9 14.0 113 62-177 495-632 (795)
72 3l4g_B Phenylalanyl-tRNA synth 96.2 0.028 9.6E-07 60.5 12.0 112 63-176 394-521 (589)
73 3ica_A Phenylalanyl-tRNA synth 95.5 0.15 5E-06 47.5 12.6 112 63-176 7-150 (213)
74 3ig2_A Phenylalanyl-tRNA synth 95.1 0.1 3.4E-06 48.7 10.0 112 63-176 7-150 (213)
75 1b7y_B Phers, protein (phenyla 94.6 0.26 8.8E-06 54.8 12.9 107 61-177 490-620 (785)
76 3dsq_A Pyrrolysyl-tRNA synthet 83.0 0.45 1.5E-05 46.4 2.0 33 390-428 217-249 (288)
77 3pco_B Phenylalanyl-tRNA synth 75.0 14 0.00049 40.9 11.0 109 65-176 494-627 (795)
78 1zq1_C Glutamyl-tRNA(Gln) amid 71.4 9.1 0.00031 41.3 8.0 115 214-340 285-404 (633)
79 1b7y_A Phers, protein (phenyla 58.3 1.8 6E-05 43.5 -0.5 93 318-444 223-328 (350)
80 3pco_A Phenylalanyl-tRNA synth 39.5 9.2 0.00031 37.9 1.2 60 367-444 242-308 (327)
81 3but_A Uncharacterized protein 30.7 17 0.00057 31.3 1.3 21 387-407 34-54 (136)
82 2p8t_A Hypothetical protein PH 29.9 72 0.0025 29.2 5.5 56 263-323 114-172 (200)
83 1b0n_B Protein (SINI protein); 29.2 47 0.0016 24.3 3.3 31 410-444 10-42 (57)
84 4a5p_A Protein MXIA, protein V 27.1 1.1E+02 0.0039 30.7 6.9 54 325-412 74-127 (383)
85 2d6f_C Glutamyl-tRNA(Gln) amid 26.3 77 0.0026 34.0 5.7 112 214-340 276-392 (619)
86 2ftc_I Mitochondrial ribosomal 24.3 97 0.0033 25.9 4.9 50 312-378 15-64 (118)
87 3i9v_7 NADH-quinone oxidoreduc 22.6 51 0.0017 27.6 2.7 40 325-379 13-52 (129)
88 3mix_A Flagellar biosynthesis 21.5 92 0.0031 31.4 4.9 22 391-412 101-122 (382)
89 4f87_A Plycb; lysin, bacteriop 21.3 44 0.0015 24.4 1.8 37 390-431 25-64 (72)
No 1
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-116 Score=947.95 Aligned_cols=431 Identities=41% Similarity=0.695 Sum_probs=396.2
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHh-hcCCe
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLE-DVHGF 79 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~-~~~gF 79 (452)
++||++||.|++|+|||+|. ++|+++++.. ..++++|++|||||||++.++++|++||++++++|+||. + +||
T Consensus 95 ~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~----~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f~~~~-~gF 168 (617)
T 4ah6_A 95 MPTGEIEIKVKTAELLNACK-KLPFEIKNFV----KKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNL-HGF 168 (617)
T ss_dssp STTTTEEEEEEEEEEEECBC-CCSSCTTTTC----CSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHTT-SCC
T ss_pred CCCCcEEEEEeEEEEeecCC-CCCccccccc----ccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHHHHhc-CCe
Confidence 36899999999999999996 8999876432 467999999999999999999999999999999999996 6 999
Q ss_pred EEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeec
Q 043787 80 VEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA 159 (452)
Q Consensus 80 ~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~ 159 (452)
+||+||+|++++|+||++|.+|++ .+|++|||+||||+|||+||++|++||||||||||||+++++|+||||||||||+
T Consensus 169 ~EVeTPiL~~st~~GA~~F~v~~~-~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~a 247 (617)
T 4ah6_A 169 VDIETPTLFKRTPGGAKEFLVPSR-EPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMS 247 (617)
T ss_dssp EECCCCSSBCCCCSSSCCCEEECS-STTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEEEE
T ss_pred EEEeCCeeccCCCCCCcCceeccc-cCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceeeec
Confidence 999999999999999999999987 5789999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCcccccccccc-CCC
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLK-SGG 238 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~-~~~ 238 (452)
|++++|+|+++|+|++++++.+. .+++.||+||||+|||++||+||||+||++++.|+++++.+++|++|...++ +++
T Consensus 248 f~d~~d~m~~~E~l~~~~~~~~~-~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~~g 326 (617)
T 4ah6_A 248 FVDQTGIQSLIEGLLQYSWPNDK-DPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPHG 326 (617)
T ss_dssp SCCHHHHHHHHHHHHHHHSCSSS-CCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTSTTE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc-CccCCCceEeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcCCC
Confidence 99999999999999999997654 3677899999999999999999999999999999999999999999998776 578
Q ss_pred eEEEEEccCCCcccchhhhccCcchHHHHH-cCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEE
Q 043787 239 IIKVLCVPSGAKTYSNTALKKGDIYNEAIK-SGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILF 317 (452)
Q Consensus 239 ~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~-~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~ 317 (452)
.|+++++|++++.+||++++ ++.++++. +|++|++|+++ +++.+ .||+.|+|++++.++|.+++++++||+|||
T Consensus 327 ~VkAI~vpg~a~~lsRK~id--~L~e~ak~~~g~ggl~~~~~-~d~~~--~~~I~Kflsee~~~~L~e~l~a~~GDlIff 401 (617)
T 4ah6_A 327 TVKAICIPEGAKYLKRKDIE--SIRNFAADHFNQEILPVFLN-ANRNW--NSPVANFIMESQRLELIRLMETQEEDVVLL 401 (617)
T ss_dssp EEEEEEEESCTTTSCTTTHH--HHHHHHHHSSCCCEEEECSS-TTTTS--SCTTHHHHHHHHHHHHHHHHTCCSSEEEEE
T ss_pred eEEEEEcCCCccccchhhHH--HHHHHHHHhcCCceEEEEEe-cCCcc--ccchhhhcCHHHHHHHHHHhCCCCCCEEEE
Confidence 99999999977668998875 35678888 78777666654 44433 789999999999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHHHHcC-----CCCCCCccEEEEeccCCCc-cCcccccccccccCcCCCCCCCcc----Chh
Q 043787 318 AVGHPASVNKTLDRLRTFVAHELG-----LIDNSKHSILWITDFPMFE-WNDSEQRLEALHHPFTAPNPEDMD----DLS 387 (452)
Q Consensus 318 ~a~~~~~~~~~LG~lR~~l~~~l~-----l~~~~~~~flWV~dFPlfe-~~e~~~r~~a~HHPFT~P~~ed~~----~~~ 387 (452)
+||+...++++||+||+++++.++ |++++.|+|+||||||||| +++++|||.|+|||||||+++|++ +|.
T Consensus 402 ~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~ 481 (617)
T 4ah6_A 402 TAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPK 481 (617)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTT
T ss_pred ecCChHHHHHHHHHHHHHHHHHhhhccccccCCCCeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChh
Confidence 999999999999999999999983 8999999999999999995 457789999999999999999987 788
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHH-HcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE-IVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~-~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
+|+|++||||+||+|||||||||||+++|+++|+ .+|++++ +|++||+||+|| ||||
T Consensus 482 ~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~----~~~~~l~a~~~G---~pph 539 (617)
T 4ah6_A 482 KARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVK----MLSHLLQALDYG---APPH 539 (617)
T ss_dssp SSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSSTHH----HHHHHHHHHTBT---CCCE
T ss_pred hhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhccchh----hHHHHHHHHHcC---CCCC
Confidence 9999999999999999999999999999999998 9999864 566699999999 9999
No 2
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=3.7e-105 Score=858.79 Aligned_cols=432 Identities=47% Similarity=0.830 Sum_probs=396.8
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCccccccc--ccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTAD--DAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHG 78 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~--~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~g 78 (452)
++||++||.|++++|||+|. ++||.+.+.. ..+..+++++|++|||||||++.++++|++||++++++|+||.+ +|
T Consensus 85 ~~~ge~Ei~~~~i~vl~~a~-~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~~iR~fl~~-~g 162 (580)
T 1l0w_A 85 LATGRVEVELSALEVLAEAK-TPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDR-EG 162 (580)
T ss_dssp STTTTEEEEEEEEEEEECCC-CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CCCccEEEEEeEEEEeccCc-CCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 46899999999999999986 6788775410 00125789999999999999999999999999999999999998 99
Q ss_pred eEEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 79 FVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 79 F~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
|+||+||+|++++||||++|.||++..++++|||+||||||||+||++|++||||||||||||+++++||||||||||||
T Consensus 163 F~EVeTPiL~~s~~eGAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~ 242 (580)
T 1l0w_A 163 FVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEM 242 (580)
T ss_dssp CEECCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEE
T ss_pred cEEEeCCEEecCCCCCCCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeee
Confidence 99999999999999999999999987788999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCC
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGG 238 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~ 238 (452)
+|++++|+|+++|+||+++++++++++++.||+||||.|||++||+||||+|+++++.++++++.++.|.+|...+
T Consensus 243 af~d~~dvm~~~E~li~~i~~~v~~~~~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~---- 318 (580)
T 1l0w_A 243 SFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAE---- 318 (580)
T ss_dssp ESCCHHHHHHHHHHHHHHHHHHHTCCCCCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSS----
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEHHHHHHHhcCCCcccccccchhhhhhhhhccccccccccc----
Confidence 9999999999999999999999999889899999999999999999999999999999999999888888876543
Q ss_pred eEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEE
Q 043787 239 IIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFA 318 (452)
Q Consensus 239 ~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~ 318 (452)
.|.++++|+ .++++.++ .+.+.++++|++|++|+++.+++ + .+++.|++++ +..+|.++++++.||+++++
T Consensus 319 ~v~~i~~~~---~~~r~~~~--~l~~~~~~~g~~~~~~~~~~~~~-~--~~~~~k~l~~-~~~~l~~~~~~~~gd~~~~~ 389 (580)
T 1l0w_A 319 SVKALALPK---ALSRKEVA--ELEEVAKRHKAQGLAWARVEEGG-F--SGGVAKFLEP-VREALLQATEARPGDTLLFV 389 (580)
T ss_dssp EEEEEEESS---CCCHHHHH--HHHHHHHHTSCSCCEEEEEETTE-E--ESTTHHHHGG-GHHHHHHHHCCCTTCEEEEE
T ss_pred eeEEEeccC---ccCHHHHH--HHHHHHHHcCCCcceEEEecCcc-c--cchhhhhhhH-HHHHHHHHhCCCcCceEEEe
Confidence 688999997 48887765 35567888999999999987653 3 3677888887 77889999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc----Chhhhhhcee
Q 043787 319 VGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD----DLSSARALAY 394 (452)
Q Consensus 319 a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~----~~~~v~a~~Y 394 (452)
++....+++.||+||.++++.++|+++ .++|+||||||+|+++++++||.|+|||||||+++|++ +|.++++++|
T Consensus 390 ~~~~~~~~~~Lg~lr~~l~~~~~lve~-~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~f 468 (580)
T 1l0w_A 390 AGPRKVAATALGAVRLRAADLLGLKRE-GFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAY 468 (580)
T ss_dssp EESHHHHHHHHHHHHHHHHHHTTCCCC-SCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEE
T ss_pred cCccchhhhhHHHHHHHHHHHhccccc-ccCeEEEEcCCcccccccccccccccCCccCCCchhhhhhcCCccceeeeEE
Confidence 999989999999999999999999987 88999999999999999999999999999999998875 4556789999
Q ss_pred eeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 395 DMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 395 DLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
|||+||+||||||+||||+++|+++|+.+|+++++++.+|++||+||+|| ||||
T Consensus 469 DL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG---~PPh 522 (580)
T 1l0w_A 469 DLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYG---APPH 522 (580)
T ss_dssp EEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBT---CCCE
T ss_pred EEEeCCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcC---CCCC
Confidence 99999999999999999999999999999999999998999999999999 9999
No 3
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=4.7e-104 Score=852.16 Aligned_cols=432 Identities=46% Similarity=0.772 Sum_probs=401.2
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++||++||.|++++|||+|. ++|+++.+ .+++++|++|||||||++.++++|++||++++++|+||.+ +||+
T Consensus 87 ~~~geiEl~~~~i~vl~~a~-~lP~~~~~------~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl~~-~gFl 158 (585)
T 1c0a_A 87 MATGEIEVLASSLTIINRAD-VLPLDSNH------VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDD-HGFL 158 (585)
T ss_dssp STTTTEEEEEEEEEEEECCC-SCSSCTTS------CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCCccEEEEEeEEEEEeccC-CCCCCccc------cCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHHHh-CCcE
Confidence 46899999999999999985 78887753 4789999999999999999999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|++++||||++|.||++..++++|||+||||||||+||++|++||||||||||||+++++|||||||||+||+|
T Consensus 159 EVeTPiL~~s~~eGAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af 238 (585)
T 1c0a_A 159 DIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSF 238 (585)
T ss_dssp ECCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEES
T ss_pred EEeCCEEecCCCCCCccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecC
Confidence 99999999999999999999998778899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccC-CCe
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKS-GGI 239 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~-~~~ 239 (452)
++++|+|+++|+||+++++.+++.+++. |+||||.|||++||+|+||+|+++++.++++.+.+++|.+|...++. ++.
T Consensus 239 ~d~~dvm~~~E~li~~i~~~v~~~~~~~-f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~ 317 (585)
T 1c0a_A 239 MTAPQVREVMEALVRHLWLEVKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGR 317 (585)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSCCCCS-CCEEEHHHHHHHHSCSSCCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCccc-cceeeHHHHHHHhcCCCccccCCceeEEehhhhccCCcceehhhhhccCce
Confidence 9999999999999999999998887766 99999999999999999999999999999999999999999877764 678
Q ss_pred EEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEec-----CCCccccccccccCChhhHHHHHHHhCCCCCcE
Q 043787 240 IKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLD-----AGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDL 314 (452)
Q Consensus 240 v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~-----~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~ 314 (452)
+.++++|... +++++.++ ++.+.++++|++|++|+++.+ ++ + .+++.|++++++..+|.+.++++.||+
T Consensus 318 ~~~i~~~~~~-~~~r~~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~-~--~~~~~k~l~~~~~~~l~~~~~~~~~d~ 391 (585)
T 1c0a_A 318 VAALRVPGGA-SLTRKQID--EYGNFVKIYGAKGLAYIKVNERAKGLEG-I--NSPVAKFLNAEIIEDILDRTAAQDGDM 391 (585)
T ss_dssp EEEEEETTGG-GCCHHHHH--HHHHHHHHTTCSCCCEEEESCGGGGGGG-E--ECTTGGGSCHHHHHHHHHHTTCCTTCE
T ss_pred EEEEEccccC-ccCHhhHH--HHHHHHHHcCCCCceeEEeccccccccc-c--cchhhhhcCHHHHHHHHHHhCCCcCcE
Confidence 9999999764 58887765 355678889999999999866 33 3 478899999999999999999999999
Q ss_pred EEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc----Chhhhh
Q 043787 315 ILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD----DLSSAR 390 (452)
Q Consensus 315 ~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~----~~~~v~ 390 (452)
++++++....+++.||+||.++++.++|++++.++|+||||||+|+ ++++++|.|+|||||||+++|++ +|.+++
T Consensus 392 ~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~~p~fV~dfP~~~-~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~ 470 (585)
T 1c0a_A 392 IFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFE-DDGEGGLTAMHHPFTSPKDMTAAELKAAPENAV 470 (585)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCCCEEEEECCBSEE-ECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCB
T ss_pred EEEecCcccchhhhhHHHHHHHHHHhCcccccccccEEEEeCCccc-cccccccccccCCccCCCchhhhhhccCCccee
Confidence 9999999889999999999999999999988889999999999999 88899999999999999998764 455677
Q ss_pred hceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 391 ALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 391 a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
+++||||+||+||||||+||||+++|+++|+.+|+++++++.+|++||+||+|| ||||
T Consensus 471 a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG---~PPh 528 (585)
T 1c0a_A 471 ANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYG---TPPH 528 (585)
T ss_dssp BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTT---CCCE
T ss_pred eeEEEEEECCEEEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcC---CCCc
Confidence 999999999999999999999999999999999999999998899999999999 9999
No 4
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=3.5e-68 Score=563.61 Aligned_cols=324 Identities=26% Similarity=0.452 Sum_probs=255.5
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
+||++||.|++++|||+|..++|.... ...++++|+++|||||| ++.+++++++||+|++++|+||.+ +||+
T Consensus 131 ~~ge~ei~~~~i~vl~~a~~plP~k~~------~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~-~gFl 203 (504)
T 1e1o_A 131 QTGELSIHCTELRLLTKALRPLPDKFH------GLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVA-RGFM 203 (504)
T ss_dssp TTCCEEEEEEEEEEEECCSSCCCC-------------TTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-TTCE
T ss_pred CCceEEEEEEEEEEecccCCCCCcccc------CCcChhhhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 579999999999999999667774321 23568999999999996 899999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCC--ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa--~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|++ +++|| ++|.++++. .+..+||+||||||+|+||++|++||||||||||||+++++|+|||||||+||
T Consensus 204 EVeTPiL~~-~~~Ga~ar~F~t~~~~-~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~ 281 (504)
T 1e1o_A 204 EVETPMMQV-IPGGASARPFITHHNA-LDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYM 281 (504)
T ss_dssp ECCCCSEES-SCCSSCCCCCEEEETT-TTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEE
T ss_pred EEECCeEEe-cCCCCcccceEeccCC-CCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCCccccCceeeeeeee
Confidence 999999995 56664 678887553 47888999999999999999999999999999999999998889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||+++++.+++ +++..||+||||.|||++|++| .|+ .++-
T Consensus 282 af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~~i~~~~pf~rity~eAi~~~~~d-~d~---------~~~~------ 345 (504)
T 1e1o_A 282 AYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE-TDM---------ADLD------ 345 (504)
T ss_dssp ESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEETTSCCEEEEHHHHHHHHSTT-CCG---------GGGG------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCEeeccCCCceEEeHHHHHHHHcCC-CCc---------cccC------
Confidence 9999999999999999999999876 4567899999999999999874 111 0000
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
+.. .+.+.+++.|.+ + +.
T Consensus 346 ------------------------~~~-----~~~~~~~~~g~~------~-~~-------------------------- 363 (504)
T 1e1o_A 346 ------------------------NFD-----AAKALAESIGIT------V-EK-------------------------- 363 (504)
T ss_dssp ------------------------SHH-----HHHHHHHHTTCC------C-CT--------------------------
T ss_pred ------------------------CHH-----HHHHHHHHcCCC------C-CC--------------------------
Confidence 000 011223333321 0 00
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS 388 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~ 388 (452)
+ ..+|+|+..+.+.+ +++.-+.|+||+|||++ .||||||+++|..
T Consensus 364 ---~--------------~~~g~l~~~~~~~~--ve~~~~~p~fV~dyP~~------------~~pf~~~~~~dp~---- 408 (504)
T 1e1o_A 364 ---S--------------WGLGRIVTEIFDEV--AEAHLIQPTFITEYPAE------------VSPLARRNDVNPE---- 408 (504)
T ss_dssp ---T--------------CCHHHHHHHHHHHH--TGGGCCSCEEEECCBGG------------GCTTBCBCSSCTT----
T ss_pred ---C--------------cCHhHHHHHHHHHH--hhccCCCeEEEECCCcc------------cCcCcCCCCCCCC----
Confidence 0 12566676666653 34445679999999986 5999999987754
Q ss_pred hhhceeeeeecCeEeeccccccccHHHHHHHHHHc----CCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 389 ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIV----GISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 389 v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~l----g~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||++||+||+|||+||||++.|++.|+.. +...++....+.+||+||+|| ||||
T Consensus 409 -~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG---~PPh 471 (504)
T 1e1o_A 409 -ITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYG---LPPT 471 (504)
T ss_dssp -BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHH---CCSE
T ss_pred -ceEEEEEEECCeEEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcC---CCCc
Confidence 6899999999999999999999999999999764 222223222234499999999 9999
No 5
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=7.3e-67 Score=552.50 Aligned_cols=323 Identities=24% Similarity=0.366 Sum_probs=255.8
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
+||++||.|++++|||+|..++|.... ...++++|+++|||||| ++.+++++++||++++++|+||.+ +||+
T Consensus 122 ~~ge~ei~~~~i~vl~~~~~plP~k~~------~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~-~gF~ 194 (493)
T 3a74_A 122 KVGELSIKVSSYEFLTKALRPLPEKYH------GLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDS-HGYL 194 (493)
T ss_dssp TTCCEEEEEEEEEEEECCSSCCCCC-----------CHHHHHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCCcEEEEEEEEEEcccccCCCCcccc------CCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHh-CCeE
Confidence 579999999999999999667774321 23578999999999996 899999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCC--ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa--~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++ ++|+ +.|.++++. .+..+||+||||+|+|+||++|++||||||||||||+++++|+|||||||+||
T Consensus 195 EVeTPiL~~~-~~Ga~a~~F~~~~~~-~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~ 272 (493)
T 3a74_A 195 EVETPMMHAV-AGGAAARPFITHHNA-LDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYE 272 (493)
T ss_dssp ECCCCSEESS-CCSSSSCCCEEEETT-TTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEE
T ss_pred EEECCeEEec-CCCCcccceEecccC-CCceeEEecCHHHHHHHHhhcccCceEEECccccCCCCCcccCCceeEEEEEe
Confidence 9999999965 5554 567776442 47788999999999999999999999999999999999998889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||+++++.+++ +++..||+||||.|||++|++.... .+
T Consensus 273 af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~~~i~~~~pf~rity~eai~~~~~~d~~----------~~-------- 334 (493)
T 3a74_A 273 AYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFW----------RQ-------- 334 (493)
T ss_dssp ETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEECCSSCEEEEHHHHHHHHTCCCTT----------SC--------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCCEeeccCCCcceeeHHHHHHHHhCCCCc----------cc--------
Confidence 9999999999999999999999876 4567899999999999999752110 00
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
++.. +..+.+++.|.+ + +.
T Consensus 335 -----------------------~~~~-----~~~~~~~~~g~~------~-~~-------------------------- 353 (493)
T 3a74_A 335 -----------------------MSDE-----EARELAKEHGVE------V-AP-------------------------- 353 (493)
T ss_dssp -----------------------CCHH-----HHHHHHHHTTCC------C-CT--------------------------
T ss_pred -----------------------cCHH-----HHHHHHHHcCCC------C-CC--------------------------
Confidence 0000 012233333322 0 00
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS 388 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~ 388 (452)
...+|+++..+.+.+ +++.-+.|+||+|||++ .||||||+++|..
T Consensus 354 -----------------~~~~g~l~~~~~~~~--ve~~~~~p~fv~dyP~~------------~~pf~~~~~~dp~---- 398 (493)
T 3a74_A 354 -----------------HMTFGHIVNEFFEQK--VEDKLIQPTFIYGHPVE------------ISPLAKKNPDDPR---- 398 (493)
T ss_dssp -----------------TCCHHHHHHHHHHHH--TGGGCCSCEEEECCBGG------------GCTTBCBCSSCTT----
T ss_pred -----------------CcChhHHHHHHHHHH--hhcccCCcEEEECCCcc------------cCCccCcCCCCCC----
Confidence 012566676666653 34444679999999986 5999999987754
Q ss_pred hhhceeeeeecCeEeeccccccccHHHHHHHHHHc----CCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 389 ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIV----GISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 389 v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~l----g~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||++||+||+|||+||||++.|++.|+.. +...++....+.+||+||+|| ||||
T Consensus 399 -~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG---~PPh 461 (493)
T 3a74_A 399 -FTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYG---MPPT 461 (493)
T ss_dssp -BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTC---CCSE
T ss_pred -eEEEEEEEeCCeEEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCC---CCCc
Confidence 6899999999999999999999999999999653 222222222223499999999 9999
No 6
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=3.4e-66 Score=547.24 Aligned_cols=307 Identities=30% Similarity=0.466 Sum_probs=250.7
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccc--------cCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHH
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADD--------AKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYL 73 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~--------~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff 73 (452)
+||++||.|++++|||+|..++|+++++..+ ....+++++|++|||||||++.+++++++||++++++|+||
T Consensus 113 ~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~ 192 (487)
T 1eov_A 113 TVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYL 192 (487)
T ss_dssp SEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999997789998754310 01137899999999999999999999999999999999999
Q ss_pred hhcCCeEEEcCceEeecCCC-CCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cce
Q 043787 74 EDVHGFVEIETPVLSRSTPE-GARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEF 151 (452)
Q Consensus 74 ~~~~gF~EV~TPiL~~~~~e-Ga~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EF 151 (452)
.+ +||+||+||+|+++.++ ||+.|.+++ .|+.+||+||||+|+|+||++|++||||||||||+|+++++|| |||
T Consensus 193 ~~-~gF~EV~TPil~~~~~~~ga~~f~~~~---~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEF 268 (487)
T 1eov_A 193 AT-KKFTEVHTPKLLGAPSEGGSSVFEVTY---FKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEF 268 (487)
T ss_dssp HH-TTCEECCCCSEESSCSSSSSCCCEEEE---TTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEE
T ss_pred Hh-CCcEEEeCCEEEEecCCCCcccceecc---CCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhh
Confidence 98 99999999999998666 566777774 4788999999999999999999999999999999999999999 799
Q ss_pred eeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcC-----------------CCCCC--CCceeeHHHHHHHhCCCCCCCcc
Q 043787 152 TQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKD-----------------VQLPN--PFPRLTYAEAMSRYGSDRPDTRF 211 (452)
Q Consensus 152 tqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~-----------------~~l~~--pf~rity~eA~~~~g~dkpd~r~ 211 (452)
||||+||+|. +++++|+++|+|++++++.+++ .++.. ||+|+||.||++.+.
T Consensus 269 t~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~-------- 340 (487)
T 1eov_A 269 TGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLR-------- 340 (487)
T ss_dssp EEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHH--------
T ss_pred hhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHH--------
Confidence 9999999997 6999999999999999987642 01111 566666666654321
Q ss_pred cccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccc
Q 043787 212 SLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPAL 291 (452)
Q Consensus 212 ~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 291 (452)
T Consensus 341 -------------------------------------------------------------------------------- 340 (487)
T 1eov_A 341 -------------------------------------------------------------------------------- 340 (487)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCccccccccc
Q 043787 292 VSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEAL 371 (452)
Q Consensus 292 ~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~ 371 (452)
..+++.+|. .+........||+++.. .++ ..|+||+|||+.
T Consensus 341 --------------~~g~~~~~~----~d~~~~~e~~l~~~~~~---~~~------~~~~~v~dyP~~------------ 381 (487)
T 1eov_A 341 --------------AAGKEIGDF----EDLSTENEKFLGKLVRD---KYD------TDFYILDKFPLE------------ 381 (487)
T ss_dssp --------------HTTCCCCTT----CCCCHHHHHHHHHHHHH---HSC------CSEEEEECCBGG------------
T ss_pred --------------HhCCCCCcc----cchhhHHHHHHHHHHHH---HhC------CCCEEEECCccc------------
Confidence 011110000 00111234567777643 344 469999999984
Q ss_pred ccCc-CCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHH--HHhhhhhhhhhhhhcCCCCC
Q 043787 372 HHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPE--QFIFAEVVAIPALSSGDFNC 448 (452)
Q Consensus 372 HHPF-T~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~--~~~~~f~~~l~a~~~G~~~~ 448 (452)
|||| |||+++|.. .+.+||||+||.||+|||+||||++.|++.|+.+|++++ ..+| ||+||+|| |
T Consensus 382 ~~pfy~~~~~~dp~-----~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~----yl~al~yG---~ 449 (487)
T 1eov_A 382 IRPFYTMPDPANPK-----YSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKD----YCDGFSYG---C 449 (487)
T ss_dssp GSCTTBCBCSSCTT-----BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHH----HHHHHTTC---C
T ss_pred cChhhcCcCCCCCC-----eEEEEEEEeCCEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHH----HHHHHhcC---C
Confidence 9998 899988753 699999999999999999999999999999999999998 6666 99999999 9
Q ss_pred CCC
Q 043787 449 QPQ 451 (452)
Q Consensus 449 ~p~ 451 (452)
|||
T Consensus 450 PPh 452 (487)
T 1eov_A 450 PPH 452 (487)
T ss_dssp CCE
T ss_pred CCC
Confidence 999
No 7
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=1e-66 Score=544.81 Aligned_cols=301 Identities=22% Similarity=0.353 Sum_probs=240.6
Q ss_pred CCCceEEEEeEEEEEecCCC--CCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCe
Q 043787 2 KTGFIEVAVEHVQVLNAVRS--KLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGF 79 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~--~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF 79 (452)
+||++||.|++++|||++.+ .+|++.+ .+++++|+++||||||++.+++++++||++++++|+||.+ +||
T Consensus 80 ~~g~~El~~~~~~vl~~~~p~~~~pl~~~-------~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~-~gF 151 (435)
T 2xgt_A 80 APNGHELIADFWKIIGNAPPGGIDNVLNE-------EASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYN-AGY 151 (435)
T ss_dssp --TTEEEEEEEEEEEECCCTTHHHHHCC---------CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred CCCcEEEEEEEEEEeecCCCccccccccc-------CCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHH-CCC
Confidence 57999999999999998532 1343322 4789999999999999999999999999999999999988 999
Q ss_pred EEEcCceEeecCCCCCc-cceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeee
Q 043787 80 VEIETPVLSRSTPEGAR-DYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDME 157 (452)
Q Consensus 80 ~EV~TPiL~~~~~eGa~-~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e 157 (452)
+||+||+|+++++|||. .|.++. .|+++||+||||||||++|+ |++||||||||||||+++++|| |||||||||
T Consensus 152 lEVeTPiL~~s~~eG~~~~F~~~~---~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e 227 (435)
T 2xgt_A 152 VEVAPPTLVQTQVEGGSTLFNLDY---FGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAE 227 (435)
T ss_dssp EECCCCSEESCCSSCTTSCCEEEE---TTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSCCTTCCSEEEEEEEE
T ss_pred EEEECCeEeeccCCCchhceeecc---CCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCCccccccceeEEEEE
Confidence 99999999999999885 455553 47889999999999999885 7999999999999999999888 699999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHhcC------------CCC---CCCCceeeHHHHHHHhCCCCCCCccccccccccccc
Q 043787 158 LAFTPLDDMLRLNEDLIRKIFLEIKD------------VQL---PNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIF 222 (452)
Q Consensus 158 ~~f~~~~dlm~~~E~li~~i~~~~~~------------~~l---~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~ 222 (452)
|+|+|++|+|+++|+|++++++.+++ +++ ..||+||||.||++.+.....+ .
T Consensus 228 ~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~~~~------~------- 294 (435)
T 2xgt_A 228 CPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVE------N------- 294 (435)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCCCCCSSCEEEEHHHHHHHHHHTTCB------C-------
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhccccccccCCCceEEEHHHHHHHHHhcCCC------c-------
Confidence 99999999999999999999987753 232 2699999999999986422100 0
Q ss_pred ccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHH
Q 043787 223 LESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQ 302 (452)
Q Consensus 223 ~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~ 302 (452)
+.+ .++ .+...++++..
T Consensus 295 ------------~~~------------~~~-------------------------------------~~g~~l~~~~e-- 311 (435)
T 2xgt_A 295 ------------EFG------------NTF-------------------------------------TYGEDIAEAAE-- 311 (435)
T ss_dssp ------------TTS------------CBC-------------------------------------CTTSCCCHHHH--
T ss_pred ------------ccc------------ccc-------------------------------------chhhHHHHHHH--
Confidence 000 000 00011211110
Q ss_pred HHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCC
Q 043787 303 LLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPED 382 (452)
Q Consensus 303 l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed 382 (452)
..+.+.+ .+|+||+|||+- ..||||+..+|
T Consensus 312 -------------------------------~~l~~~~-------~~p~fv~d~P~~------------~~~f~a~~~~~ 341 (435)
T 2xgt_A 312 -------------------------------RFMTDTI-------NKPILLNRFPSE------------IKAFYMQRDAQ 341 (435)
T ss_dssp -------------------------------HHHHHHH-------TSCEEEECCBGG------------GSCTTBCBCSS
T ss_pred -------------------------------HHHHHhc-------CCcEEEECCChh------------hCcccCCCCCC
Confidence 1223333 368999999983 57898875443
Q ss_pred ccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 383 MDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 383 ~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
++. .+.+|||++||+ ||+|||+||||++.|++.|+..|+++++..| ||+|++|| +|||
T Consensus 342 --~p~--~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~----yl~a~~yG---~pPh 400 (435)
T 2xgt_A 342 --DNT--LTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYW----YLDQRLYG---TCPH 400 (435)
T ss_dssp --CTT--BBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHH----HHHHHHSS---CCCE
T ss_pred --CcC--eEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHH----HHHHHhCC---CCCC
Confidence 222 589999999998 9999999999999999999999999988776 99999999 9999
No 8
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=2.8e-66 Score=539.20 Aligned_cols=300 Identities=28% Similarity=0.465 Sum_probs=205.8
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
+|++||.|++++|||+|..++|+++.+.. ..+++++|++|||||||++.+++++++||++++++|+||.+ +||+||
T Consensus 72 ~~~~el~~~~~~vl~~~~~~~P~~~~~~~---~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~-~gF~EV 147 (422)
T 1n9w_A 72 PGGLEVQAKEVEVLSPALEPTPVEIPKEE---WRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDR-QDFTEI 147 (422)
T ss_dssp TTSEEEEEEEEEEEECCCSCCC--------------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEC
T ss_pred CccEEEEEeEEEEeccCCcCCCCCccccc---cCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEE
Confidence 57999999999999999778999875310 14789999999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccce-eecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecC
Q 043787 83 ETPVLSRSTPEGARDYL-VPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF 160 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~~-v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f 160 (452)
+||+|++++++|+++.+ ++ . .|+.+||+||||+|+|+|+ +|++||||||||||+|+++++|| |||||||+|++|
T Consensus 148 ~TPil~~~~~e~~~~~f~~~-~--~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~ 223 (422)
T 1n9w_A 148 FTPKVVRAGAEGGSGLFGVD-Y--FEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGF 223 (422)
T ss_dssp CCC-------------------------------CHHHHHHHH-HHHSEEEEEEEC-------------CCEEEEEEEES
T ss_pred ECCEEEEeCCCCCceeEEEe-e--CCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCCCCcccceeEEeeeeeeC
Confidence 99999999999988744 53 2 4677899999999999987 78999999999999999999888 799999999999
Q ss_pred C-CHHHHHHHHHHHHHHHHHHhcC----------CCCC---CCCceeeHHHHHHHhCCCCCCCcccccccccccccccCc
Q 043787 161 T-PLDDMLRLNEDLIRKIFLEIKD----------VQLP---NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESP 226 (452)
Q Consensus 161 ~-~~~dlm~~~E~li~~i~~~~~~----------~~l~---~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~ 226 (452)
+ +++|+|+++|+|++++++.+++ ..++ .||+||||.||++.|.... +..++
T Consensus 224 ~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~~~pf~rity~eA~~~~~~~~-~~~~~-------------- 288 (422)
T 1n9w_A 224 IADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEEL-GYPVG-------------- 288 (422)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCCSSSCCEEEHHHHHHHHHHTS-CCCCC--------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCccccccCCCcceeEHHHHHHHHHhcC-Ccccc--------------
Confidence 9 9999999999999999987643 3444 7999999999999883211 10000
Q ss_pred cccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHH
Q 043787 227 FRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIR 306 (452)
Q Consensus 227 f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~ 306 (452)
..++.+....|.
T Consensus 289 ------------------------------------------------------------------~dl~~~~e~~l~-- 300 (422)
T 1n9w_A 289 ------------------------------------------------------------------QDLSEEAERLLG-- 300 (422)
T ss_dssp ------------------------------------------------------------------SSCCHHHHHHHH--
T ss_pred ------------------------------------------------------------------cccCcHHHHHHH--
Confidence 001111111111
Q ss_pred hCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccCh
Q 043787 307 CSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDL 386 (452)
Q Consensus 307 ~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~ 386 (452)
..+...++ ..|+||+|||+. ||||||+..+| .
T Consensus 301 ---------------------------~~~~~~~~------~~p~fv~d~P~~------------~~pf~~~~~~d-~-- 332 (422)
T 1n9w_A 301 ---------------------------EYAKERWG------SDWLFVTRYPRS------------VRPFYTYPEED-G-- 332 (422)
T ss_dssp ---------------------------HHHHHHTC------CSEEEEECCBGG------------GSCTTBCBCTT-S--
T ss_pred ---------------------------HHHHhhhC------CceEEEECCChh------------hCcCcCCCCCC-C--
Confidence 11223344 369999999986 99999998766 2
Q ss_pred hhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 387 SSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 387 ~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||++||+||+|||+|+||++.|++.|+..|++++..+| ||+||+|| ||||
T Consensus 333 ---~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~----yl~a~~yG---~PPh 387 (422)
T 1n9w_A 333 ---TTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHG----YLEVFKYG---MPPH 387 (422)
T ss_dssp ---BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH----HHGGGGBC---CCSE
T ss_pred ---EEEEEEEEECCEEEEeCEeecCCHHHHHHHHHHcCCCHHHHHH----HHHHHhcC---CCCc
Confidence 6899999999999999999999999999999999999988776 99999999 9999
No 9
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.8e-65 Score=531.69 Aligned_cols=297 Identities=32% Similarity=0.518 Sum_probs=249.0
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
+|++||.|++++|||+|..++|+++++. ..+++++|+++||||||++.+++++++||++++++|+||.+ +||+||
T Consensus 82 ~~~~el~~~~~~vl~~~~~~~P~~~~~~----~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~-~gF~eV 156 (429)
T 1wyd_A 82 PRGIELHAEEITLLSKAKAPLPLDVSGK----VKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYK-EGFIEI 156 (429)
T ss_dssp GGGEEEEEEEEEEEECCCSSCSSCSSSC----CCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEC
T ss_pred CccEEEEEeEEEEeccCCCCCCCCcccc----ccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhh-CCCEEE
Confidence 4799999999999999977899987532 13789999999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccc-eeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecC
Q 043787 83 ETPVLSRSTPEGARDY-LVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF 160 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~-~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f 160 (452)
+||+|+++++||+++. .++. .|+.+||+||||+|+|+ |++|++||||||||||+|+++++|| |||||||+||+|
T Consensus 157 ~TP~l~~~~~e~~~~~f~~~~---~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~ 232 (429)
T 1wyd_A 157 FTPKIIASATEGGAQLFPVIY---FGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAF 232 (429)
T ss_dssp CCCSEESSCSSTTCCCCEEEE---TTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEET
T ss_pred ECCEEEeeCCCCCceeEEEec---CCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCccccccceeeEeeeeecC
Confidence 9999999999999874 4542 47788999999999999 7889999999999999999999888 799999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcC----------CCCC---CCCceeeHHHHHHHhCCCCCCCcccccccccccccccCcc
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKD----------VQLP---NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPF 227 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~----------~~l~---~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f 227 (452)
.+++++|+++|+|++++++.+++ ..++ .||+||||.||++.|.... .++.
T Consensus 233 ~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~l~~pf~rity~eA~~~~~~~g------~~~~----------- 295 (429)
T 1wyd_A 233 ADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKG------YNIK----------- 295 (429)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCCCCSSCEEEEHHHHHHHHHHSS------CCCC-----------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccchhhhhhcccccccCCCCccEEEHHHHHHHHHhcC------CCcc-----------
Confidence 99999999999999999987653 3343 6999999999999873210 0000
Q ss_pred ccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHh
Q 043787 228 RVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRC 307 (452)
Q Consensus 228 ~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~ 307 (452)
+ | ..++.+..
T Consensus 296 ------------------------~------------------------------~---------~~l~~~~e------- 305 (429)
T 1wyd_A 296 ------------------------F------------------------------G---------DDIGTPEL------- 305 (429)
T ss_dssp ------------------------T------------------------------T---------SCCCHHHH-------
T ss_pred ------------------------c------------------------------C---------cccCcHHH-------
Confidence 0 0 00111110
Q ss_pred CCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccCh
Q 043787 308 SAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDL 386 (452)
Q Consensus 308 ~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~~ 386 (452)
..|++.++ -+|+||+|||++ |||| ++|+++|..
T Consensus 306 --------------------------~~l~~~~~------~~p~fv~d~P~~------------~~pfy~~~~~~~p~-- 339 (429)
T 1wyd_A 306 --------------------------RILNEELK------EDLYFIVDWPSD------------ARPFYTKSKSENPE-- 339 (429)
T ss_dssp --------------------------HHHHHHHC------CSEEEEECCBGG------------GSCTTBCBCCC-CC--
T ss_pred --------------------------HHHHHHhc------cCCEEEecCChh------------hChhhCCcCCCCCC--
Confidence 12333332 169999999986 8999 667766543
Q ss_pred hhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 387 SSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 387 ~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||++||+||+|||+|+||++.|++.|+..|++++.++| ||+||+|| +|||
T Consensus 340 ---~~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~----yl~al~yG---~PP~ 394 (429)
T 1wyd_A 340 ---LSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEF----FLKWFDYG---MPPH 394 (429)
T ss_dssp ---BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH----HHGGGGSC---CCCE
T ss_pred ---eEEEEEEEECCEEEEeCeeeeCCHHHHHHHHHHcCCChHHHHH----HHHHHhcC---CCCc
Confidence 7899999999999999999999999999999999999988777 99999999 9999
No 10
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=1.8e-63 Score=519.84 Aligned_cols=303 Identities=27% Similarity=0.463 Sum_probs=250.3
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
+|++||+|++++|||+|..++|+++++. ..+++++|+++||||||++.+++++++||++++++|+||.+ +||+||
T Consensus 85 ~~~~el~~~~i~vl~~~~~~lP~~~~~~----~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~~~-~gF~EV 159 (438)
T 3nem_A 85 KLGFEILPEKIVVLNRAETPLPLDPTGK----VKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHE-NGFIEI 159 (438)
T ss_dssp TTSEEEEEEEEEEEECBCSSCSSCTTSS----SCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEC
T ss_pred CCcEEEEEEEEEEEecCCCCCCCCcccc----ccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-CCcEEE
Confidence 4899999999999999977899987642 14789999999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCC
Q 043787 83 ETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT 161 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~ 161 (452)
+||+|++++|||+.+.+.... .++.+||+||||+|||+||++|++||||||||||||+++++|| ||||||||||+|+
T Consensus 160 eTPiL~~~~~eg~~~~f~~~~--~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~ 237 (438)
T 3nem_A 160 HTPKIIATATEGGTELFPMKY--FEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFI 237 (438)
T ss_dssp CCCSEESSCSSCSSSCCEEEE--TTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESC
T ss_pred eCCEEecCCCCCCccceeEee--CCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccC
Confidence 999999999999887542222 3677899999999999999999999999999999999999888 8999999999999
Q ss_pred C-HHHHHHHHHHHHHHHHHHhc----------CCCC---CCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCcc
Q 043787 162 P-LDDMLRLNEDLIRKIFLEIK----------DVQL---PNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPF 227 (452)
Q Consensus 162 ~-~~dlm~~~E~li~~i~~~~~----------~~~l---~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f 227 (452)
+ ++|+|+++|+||+++++.+. +.++ ..||+||||.||++.+.... .++.+.
T Consensus 238 ~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~~~~~pf~rity~eai~~l~~~g------~~~~~~--------- 302 (438)
T 3nem_A 238 EDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLG------KEIPWG--------- 302 (438)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTT------CCCCTT---------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccccCCCCceEEEHHHHHHHHHHcC------CCCCCC---------
Confidence 8 99999999999999998764 3343 46999999999998753211 000000
Q ss_pred ccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHh
Q 043787 228 RVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRC 307 (452)
Q Consensus 228 ~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~ 307 (452)
..++.+...
T Consensus 303 -----------------------------------------------------------------~dl~~~~e~------ 311 (438)
T 3nem_A 303 -----------------------------------------------------------------EDIDTEGER------ 311 (438)
T ss_dssp -----------------------------------------------------------------SCCCHHHHH------
T ss_pred -----------------------------------------------------------------CCCCcHHHH------
Confidence 011111110
Q ss_pred CCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccCh
Q 043787 308 SAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDL 386 (452)
Q Consensus 308 ~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~~ 386 (452)
.|+. .+.+..+ -.|+||+|||.- ..|| ++++++|..
T Consensus 312 --------------------~l~~---~~~~~~~------~~p~fi~~yP~~------------~~pfy~k~~~~~p~-- 348 (438)
T 3nem_A 312 --------------------LLGK---YMMENEN------APLYFLYQYPSE------------AKPFYIMKYDNKPE-- 348 (438)
T ss_dssp --------------------HHHH---HHHHHHC------CSEEEEESCBGG------------GSCTTBCBCTTSTT--
T ss_pred --------------------HHHH---HhhhhcC------CCCEEEECCchh------------hCccccccCCCCCC--
Confidence 0111 1111111 369999999973 6789 677776643
Q ss_pred hhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 387 SSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 387 ~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||.++|.||+|||.|+||++.|++.|+..|++++.++| ||+|++|| +|||
T Consensus 349 ---~~~rfdL~~~G~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~----yl~a~~~G---~pP~ 403 (438)
T 3nem_A 349 ---ICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEF----YLKAFRYG---MPPH 403 (438)
T ss_dssp ---BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH----HHHTTSSC---CCCE
T ss_pred ---ceEEEEEEECCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHH----HHHHHHcC---CCCc
Confidence 6899999999999999999999999999999999999999888 99999999 9998
No 11
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=1e-63 Score=521.82 Aligned_cols=292 Identities=26% Similarity=0.464 Sum_probs=246.4
Q ss_pred CCceEEEEeEEEEEecCCCCCCc--ccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPF--LVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~--~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
+|++||.|++++|||+| .++|+ ++. .+++++|+++||||||++.+++++++||++++++|+||.+ +||+
T Consensus 85 ~~~~el~~~~~~vl~~~-~~~P~~~~~~-------~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~-~gF~ 155 (434)
T 1x54_A 85 PGGAEVHVEKLEVIQAV-SEFPIPENPE-------QASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK-DGWH 155 (434)
T ss_dssp GGGEEEEEEEEEEEECC-SCCSSCSSGG-------GSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CccEEEEEeEEEEeecC-CCCCCccccc-------CCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 47999999999999999 78998 553 4789999999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccce-eecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeee
Q 043787 81 EIETPVLSRSTPEGARDYL-VPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~-v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~ 158 (452)
||+||+|++++++|+++.+ ++ . .|+.+||+||||+|+|+ |++|++||||||||||+|+++++|| |||||||+||
T Consensus 156 eVeTP~l~~~~~e~~~~~f~~~-~--~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~ 231 (434)
T 1x54_A 156 EVFPPILVTGAVEGGATLFKLK-Y--FDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEA 231 (434)
T ss_dssp ECCCCSEESCCSSCGGGCCEEE-E--TTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEE
T ss_pred EEeCcEEEeecCCCCceeEEEe-e--cCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCCCcccccEEEEeeEEE
Confidence 9999999999999998844 54 2 47788999999999999 7889999999999999999999888 7999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CC------CCCCCceeeHHHHHHHhCCCCCCCccccccccccccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQ------LPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIF 222 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~------l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~ 222 (452)
+|.+++++|+++|+|++++++++++ .. +..||+||||.||++.|.... .++.
T Consensus 232 ~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~g------~~~~------ 299 (434)
T 1x54_A 232 AWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQSKG------VNVE------ 299 (434)
T ss_dssp ETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHHTCCSSCCEEEHHHHHHHHHHTT------CCCC------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccccccccCCCCcEEEHHHHHHHHHhcC------CCcc------
Confidence 9999999999999999999987653 22 235999999999999873211 0000
Q ss_pred ccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHH
Q 043787 223 LESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQ 302 (452)
Q Consensus 223 ~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~ 302 (452)
+ | ..++.+..
T Consensus 300 -----------------------------~------------------------------~---------~dl~~~~e-- 309 (434)
T 1x54_A 300 -----------------------------W------------------------------G---------DDLGADEE-- 309 (434)
T ss_dssp -----------------------------T------------------------------T---------CCCCHHHH--
T ss_pred -----------------------------c------------------------------C---------CccChHHH--
Confidence 0 0 00111110
Q ss_pred HHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCC
Q 043787 303 LLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPE 381 (452)
Q Consensus 303 l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~e 381 (452)
..+++.+ ++|+||+|||++ |||| |+|+++
T Consensus 310 -------------------------------~~l~~~~-------~~p~fv~d~P~~------------~~pfy~~~~~~ 339 (434)
T 1x54_A 310 -------------------------------RVLTEEF-------DRPFFVYGYPKH------------IKAFYMKEDPN 339 (434)
T ss_dssp -------------------------------HHHHTTC-------SSCEEEEEEEGG------------GSCTTBCBCSS
T ss_pred -------------------------------HHHHHHh-------CCcEEEEcCChh------------hCcccCCcCCC
Confidence 1122222 469999999986 8999 667776
Q ss_pred CccChhhhhhceeeeeec-Ce-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 382 DMDDLSSARALAYDMVYN-GV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 382 d~~~~~~v~a~~YDLVlN-G~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
|.. .+.+|||++| |+ ||+|||+|+||++.|++.|+..|++++..+| ||+||+|| ||||
T Consensus 340 ~p~-----~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~----yl~al~yG---~PP~ 399 (434)
T 1x54_A 340 DPR-----KVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEW----YLDLRRYG---SVPH 399 (434)
T ss_dssp CTT-----EEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH----HHHTTTSS---CCCE
T ss_pred CCC-----eEEEEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHH----HHHHHhcC---CCCc
Confidence 543 7899999999 99 9999999999999999999999999988777 99999999 9999
No 12
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=8.8e-63 Score=524.42 Aligned_cols=324 Identities=23% Similarity=0.398 Sum_probs=248.7
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.|++++|||+|..++|+.... ..++++|+++|||||| ++.+++++++||+++++||+||.+ +||+
T Consensus 124 ~~ge~ei~~~~i~~l~~~~~~lP~~~~~------~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~-~gF~ 196 (521)
T 3bju_A 124 KKGELSIIPYEITLLSPCLHMLPHLHFG------LKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDE-LGFL 196 (521)
T ss_dssp TTCCEEEEEEEEEEEECCCSCCCCC----------CCHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCCCEEEEEeEEEEeecCCCCCCCcccc------ccChhhhhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 4799999999999999997778876432 4689999999999999 899999999999999999999988 9999
Q ss_pred EEcCceEeecCCCC--CccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEG--ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eG--a~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++ ++| |++|.++++. .+..+||+||||||+|+||++|++||||||||||||+++++|+|||||||+||
T Consensus 197 EVeTPiL~~~-~gGa~a~~F~t~~~~-~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~trH~pEFtmlE~e~ 274 (521)
T 3bju_A 197 EIETPMMNII-PGGAVAKPFITYHNE-LDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYM 274 (521)
T ss_dssp ECCCCSEESS-CCSSSCCCCEEEETT-TTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBTTBCSEEEEEEEEE
T ss_pred EEeCceeecc-CCCccccceeeeccc-CCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCCccchhhhhhhhhh
Confidence 9999999965 455 4678776542 47888999999999999999999999999999999999997779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC-----------------CCCCCCCceeeHHHHHHHhC-CCCCCCccccccccccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD-----------------VQLPNPFPRLTYAEAMSRYG-SDRPDTRFSLQLNDVSD 220 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~-----------------~~l~~pf~rity~eA~~~~g-~dkpd~r~~~~~~~~~~ 220 (452)
+|+|++|+|+++|+||+++++.+++ +++..||+||||.||++.+. .+.++ ..+
T Consensus 275 af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~~~d~~~pf~rit~~eai~~~~g~~~~~---------~~~ 345 (521)
T 3bju_A 275 AYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPE---------TNL 345 (521)
T ss_dssp ETCCHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCEEEECCSSCEEEEHHHHHHHHHTSCCCC---------GGG
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhCCceEEecccccccccceeccCCCcccccHHHHHHHHhCCCCCc---------ccc
Confidence 9999999999999999999998865 23567999999999999873 22111 001
Q ss_pred ccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhH
Q 043787 221 IFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300 (452)
Q Consensus 221 ~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~ 300 (452)
+-.+.. .+. +.+.+++.|.. . +.
T Consensus 346 l~~~~~---------------------------~~~-----l~~~~~~~~~~---~----~~------------------ 368 (521)
T 3bju_A 346 FETEET---------------------------RKI-----LDDICVAKAVE---C----PP------------------ 368 (521)
T ss_dssp TTSHHH---------------------------HHH-----HHHHHHHTTCC---C----CS------------------
T ss_pred CCcHHH---------------------------HHH-----HHHHHHHcCCC---C----CC------------------
Confidence 000000 000 01112222211 0 00
Q ss_pred HHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCC
Q 043787 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNP 380 (452)
Q Consensus 301 ~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ 380 (452)
.......|..+ ..+. +.+.-..|+||+|||.. .+||+++++
T Consensus 369 ---------------------~~~~~~~l~~~---~e~~---ve~~l~~P~fI~dyP~~------------~spla~~~~ 409 (521)
T 3bju_A 369 ---------------------PRTTARLLDKL---VGEF---LEVTCINPTFICDHPQI------------MSPLAKWHR 409 (521)
T ss_dssp ---------------------CCCHHHHHHHH---HHHH---TGGGCCSCEEEECCBGG------------GCTTBCBCS
T ss_pred ---------------------CCCHHHHHHHH---HHHH---HHHhcCCcEEEECCccc------------cCcccccCC
Confidence 00001111111 1111 11222469999999985 689999988
Q ss_pred CCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHc------CCCHHH--HhhhhhhhhhhhhcCCCCCCCC
Q 043787 381 EDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIV------GISPEQ--FIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 381 ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~l------g~~~~~--~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
+|.. .+.+|||++||.||+||+.|+||++.|++.|+.. |.+++. .+| ||+||+|| ||||
T Consensus 410 ~dp~-----~~~rfdL~i~G~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~----yl~al~yG---~PP~ 476 (521)
T 3bju_A 410 SKEG-----LTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDEN----FCTALEYG---LPPT 476 (521)
T ss_dssp SSTT-----BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHH----HHHHHTTT---CCSE
T ss_pred CCCC-----eeeeEEEEEcceeeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHH----HHHHHhcC---CCCc
Confidence 7654 7899999999999999999999999999999654 766654 356 99999999 9998
No 13
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=4.2e-63 Score=519.31 Aligned_cols=298 Identities=22% Similarity=0.393 Sum_probs=238.0
Q ss_pred CC-CceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KT-GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~t-g~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
+| |++||+|++++|||+|..++|.... ..+++++|+++||||||++.++++|++||++++++|+||.+ +||+
T Consensus 104 ~t~g~~El~~~~i~vl~~a~~~~~~~~~------~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff~~-~gF~ 176 (456)
T 3m4p_A 104 ADILNLEMQVTEWKVIGESPIDLENIIN------KDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHD-NHFT 176 (456)
T ss_dssp TTBCSSEEEEEEEEEEECCCGGGTTTSC------TTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCCCcEEEEEeEEEEEecCCCCCccccc------ccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHHHh-CCCE
Confidence 44 9999999999999998543442221 25789999999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeec
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~ 159 (452)
||+||+|++++||||.+.+.... .|+.+||+||||||||+||+ |++||||||||||||+++++|| ||||||||||+
T Consensus 177 EVeTPiL~~s~~eGg~~~f~~~~--~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~a 253 (456)
T 3m4p_A 177 EIQPPTIVKTQCEGGSTLFKLQY--FNEPAYLTQSSQLYLESVIA-SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELP 253 (456)
T ss_dssp ECCCCSEEC------CCCCEEEE--TTEEEEECSCCHHHHHTTHH-HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEE
T ss_pred EEeCCeeecCCCCCccccccccc--cCCCcccccCHHHHHHHHHh-ccCcEEEEEhheecCCCCCCcchHHHHHhHHHHh
Confidence 99999999999998876553322 36788999999999999876 6999999999999999999888 89999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC----------CC---CCCCCceeeHHHHHHHh---CCCCCCCcccccccccccccc
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKD----------VQ---LPNPFPRLTYAEAMSRY---GSDRPDTRFSLQLNDVSDIFL 223 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~----------~~---l~~pf~rity~eA~~~~---g~dkpd~r~~~~~~~~~~~~~ 223 (452)
|++++|+|+++|+||+++++.+++ .+ +..||+||||.||++.+ |.+..+
T Consensus 254 f~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~--------------- 318 (456)
T 3m4p_A 254 FISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKD--------------- 318 (456)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSS---------------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcccccCCCCCeEeeHHHHHHHHHHcCCCccc---------------
Confidence 999999999999999999987754 22 24799999999999875 211100
Q ss_pred cCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHH
Q 043787 224 ESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQL 303 (452)
Q Consensus 224 ~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l 303 (452)
. +. .+.+.++.+..
T Consensus 319 -~-------------------------~~-------------------------------------~~g~~l~~~~e--- 332 (456)
T 3m4p_A 319 -K-------------------------PF-------------------------------------EYGEDISEKPE--- 332 (456)
T ss_dssp -S-------------------------CC-------------------------------------CTTCCCCHHHH---
T ss_pred -c-------------------------Cc-------------------------------------chHHHHHHHHH---
Confidence 0 00 00011221111
Q ss_pred HHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCC
Q 043787 304 LIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPED 382 (452)
Q Consensus 304 ~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed 382 (452)
..+++.++ .++||+|||.- ..|| ++++++|
T Consensus 333 ------------------------------~~l~~~~~-------~P~fv~~yP~~------------~~pfy~k~~~~d 363 (456)
T 3m4p_A 333 ------------------------------RQMTDEIG-------CPIFMIHFPSK------------MKAFYMSKVPGH 363 (456)
T ss_dssp ------------------------------HHHHHHHT-------SCEEEECCBGG------------GSCTTBCEETTE
T ss_pred ------------------------------HHHHHHhC-------ceEEEECCCch------------hCccccccCCCC
Confidence 12334442 58999999973 6788 5566665
Q ss_pred ccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 383 MDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 383 ~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.. .+.+|||.++|+ ||+|||.|+||++.|.+.|+..|++++.++| ||+|++|| +|||
T Consensus 364 p~-----~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~----yld~~~~G---~pP~ 421 (456)
T 3m4p_A 364 PD-----LTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYW----YTQQRKYG---SCPH 421 (456)
T ss_dssp EE-----EECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHH----HHGGGTSS---CCCE
T ss_pred CC-----eeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHH----HHHHHHcC---CCcc
Confidence 43 589999999998 9999999999999999999999999999998 99999999 9998
No 14
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=5e-62 Score=518.00 Aligned_cols=307 Identities=28% Similarity=0.415 Sum_probs=236.9
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccc-------------------------------------------------
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADD------------------------------------------------- 32 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~------------------------------------------------- 32 (452)
++|++||+|++|+|||+|..++|+++++..+
T Consensus 136 ~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 215 (548)
T 3i7f_A 136 TQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKAS 215 (548)
T ss_dssp SSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-------------------------------CCC
T ss_pred CCCcEEEEEeEEEEEecCCCCCCCCchhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4799999999999999997789999754210
Q ss_pred --cCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCccceeecccCCCce
Q 043787 33 --AKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GARDYLVPSRVQPGTF 109 (452)
Q Consensus 33 --~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~~~~v~~~~~~g~~ 109 (452)
....+++++|++|||||||++.+++++++||++++++|+||.+ +||+||+||+|++++|| ||+.|.+++. +..
T Consensus 216 ~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~-~gF~EVeTPiL~~~~~egga~~F~v~~~---~~~ 291 (548)
T 3i7f_A 216 AQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTS-QKFVEIHTPKLIGCSSEGGSNIFEVKYF---DRK 291 (548)
T ss_dssp CCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSBC----------------------
T ss_pred ccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEeCCEEecccCCCCcceeEEecC---CCc
Confidence 0124689999999999999999999999999999999999998 99999999999999999 5667777764 445
Q ss_pred eeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcC----
Q 043787 110 YALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKD---- 183 (452)
Q Consensus 110 ~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~---- 183 (452)
+||+||||||||+||++|++||||||||||||+++++|| ||||||||||+|. +++++|+++|+||+++++.+.+
T Consensus 292 ~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~ 371 (548)
T 3i7f_A 292 AYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPD 371 (548)
T ss_dssp CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred eEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 789999999999999999999999999999999999888 8999999999998 7999999999999999987631
Q ss_pred -----------CCCC-CCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcc
Q 043787 184 -----------VQLP-NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKT 251 (452)
Q Consensus 184 -----------~~l~-~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~ 251 (452)
..+. .||+||||.||++.+....-+ +.+.
T Consensus 372 el~~~~~~~~~~~~~~~pf~rit~~eai~~l~~~g~~------~~~~--------------------------------- 412 (548)
T 3i7f_A 372 ELKVIRKQYPFEDLIYRPFLRLTYKEAIEMLRASGET------IGDY--------------------------------- 412 (548)
T ss_dssp HHHHHHHHSCCCCCCCCSCEEEEHHHHHHHHHHTTCC------CCTT---------------------------------
T ss_pred HHHHhhhcCCccccccCCcceeEHHHHHHHHHHcCCC------CCCc---------------------------------
Confidence 0111 689999999999876321100 0000
Q ss_pred cchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHH
Q 043787 252 YSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDR 331 (452)
Q Consensus 252 ~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~ 331 (452)
..++.+. ...||.
T Consensus 413 -----------------------------------------~dl~~~~--------------------------e~~l~~ 425 (548)
T 3i7f_A 413 -----------------------------------------DDFTTPQ--------------------------EVKLGE 425 (548)
T ss_dssp -----------------------------------------CCCCHHH--------------------------HHHHHH
T ss_pred -----------------------------------------cccchHH--------------------------HHHHHH
Confidence 0011100 011222
Q ss_pred HHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccChhhhhhceeeeeecCeEeecccccc
Q 043787 332 LRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRI 410 (452)
Q Consensus 332 lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRI 410 (452)
+ +.+.++ -.+++|+|||.- ..|| ++++++|.. .+.+|||.++|.||+|||.|+
T Consensus 426 ~---i~~~~~------~~~~~i~~yP~~------------~~pfYak~~~~dp~-----~~~rFDL~i~G~Ei~nG~~rl 479 (548)
T 3i7f_A 426 L---IKAKYN------TDFYILDKFPAA------------IRPFYTMPDIDDPN-----YSNSYDVFVRGQEITSGAQRI 479 (548)
T ss_dssp H---HHHHHC------CSEEEEECCBGG------------GSCTTBCBCSSCTT-----BBSEEEEEETTEEEEEEEEEC
T ss_pred H---HHHHcC------CCeEEEecCccc------------cCchhhccCCCCCC-----eEEEEEEEECCEEEeeCeeec
Confidence 2 223344 136778899973 6799 667777654 689999999999999999999
Q ss_pred ccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 411 YKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 411 h~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
||++.|++.|+..|++++..+| ||+||+|| ||||
T Consensus 480 ~Dp~~~~~R~~~~G~d~~~~e~----yl~al~yG---~PPh 513 (548)
T 3i7f_A 480 HDPEFLMKRCIEKGVDPATLKD----YIESFRFG---SWPH 513 (548)
T ss_dssp CCHHHHHHHHHHTTCCGGGGHH----HHHTTSSC---CCCE
T ss_pred CCHHHHHHHHHHcCCChHHHHH----HHHHHhCC---CCCc
Confidence 9999999999999999999888 99999999 9998
No 15
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=3.4e-60 Score=503.12 Aligned_cols=323 Identities=24% Similarity=0.399 Sum_probs=244.2
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.|++|+|||+|..++|+...+ ..++++|+++|||||| ++.++++|++||+++++||+||.+ +||+
T Consensus 152 ~~gelel~~~~i~vLs~a~~plP~k~~~------l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~-~gFl 224 (529)
T 4ex5_A 152 NKGELSVKCTQLRLLAKALRPLPDKFHG------LADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGD-ADFM 224 (529)
T ss_dssp TTSCEEEEEEEEEEEECCSSCCCC------------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCCcEEEEEEEEEEEecCCCCCCccccC------CcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 6899999999999999997677765432 3578999999999997 899999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCC--ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa--~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++ ++|| ++|.+..+ ..+..+||+||||||+|+||++|++||||||||||||+++++|+||||||||||
T Consensus 225 EVeTPiL~~~-~gGA~a~pF~t~~n-~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~ 302 (529)
T 4ex5_A 225 EVETPMLHPI-PGGAAAKPFVTHHN-ALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYA 302 (529)
T ss_dssp ECCCCSEESS-CCSSSSCCCEEEET-TTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEE
T ss_pred EEeCCeeecc-CCCCcccccccccc-cCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCCCcccHhHhhhhhh
Confidence 9999999954 6666 46655433 246778899999999999999999999999999999999987779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||+++++.+++ ++++.||+||||.||+++|++.. |. .++. +
T Consensus 303 af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~id~~~pf~Rity~eAi~~~~~~~-~~---------~~~~-~---- 367 (529)
T 4ex5_A 303 AYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSY-TD---------GQLS-D---- 367 (529)
T ss_dssp ETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEETTSCCEEEEHHHHHHHHCTTS-CH---------HHHT-C----
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhCcCceecCceeeccCCCceEEEHHHHHHHHhCCC-Ch---------hhcC-C----
Confidence 9999999999999999999999876 46788999999999999997621 10 0000 0
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
.. .+...+++.|.+- +. . .+++
T Consensus 368 -------------------------~~-----~l~~~~~~~g~~~-------~~-------~---~~~~----------- 389 (529)
T 4ex5_A 368 -------------------------DA-----FLRSELKRLGVDV-------TQ-------P---AFLN----------- 389 (529)
T ss_dssp -------------------------HH-----HHHHHHHHTTCCT-------TS-------G---GGTT-----------
T ss_pred -------------------------HH-----HHHHHHHHcCCCC-------CC-------c---ccCC-----------
Confidence 00 0111222222210 00 0 0000
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS 388 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~ 388 (452)
..+|+|-..+.+.+ +.+.-..|+||+|||.- ..||++++++|..
T Consensus 390 ------------------~~~g~l~~e~~~~~--vE~~l~~P~FI~dyP~~------------~splak~~~~~p~---- 433 (529)
T 4ex5_A 390 ------------------AGIGALQLALFEET--AEAQLWEPTFIIDYPIE------------VSPLARESDTVAG---- 433 (529)
T ss_dssp ------------------CCHHHHHHHHHHHH--TGGGCCSCEEEEEEEGG------------GCTTBCBCSSSTT----
T ss_pred ------------------CCHHHHHHHHHHHH--hccccCCCEEEECCchh------------hCCCcccCCCCCC----
Confidence 00122222222211 11111369999999973 6789988877654
Q ss_pred hhhceeeeeecCeEeeccccccccHHHHHHHHHH------cCCCHHHH---hhhhhhhhhhhhcCCCCCCCC
Q 043787 389 ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI------VGISPEQF---IFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 389 v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~------lg~~~~~~---~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||.++|.||+||+.|+||++.|+..|+. .| +++.. +| ||+||+|| +|||
T Consensus 434 -~~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~~g-d~ea~~~De~----yl~aleyG---~PP~ 496 (529)
T 4ex5_A 434 -ITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAG-DEEAMFFDAD----YIRALEYG---MPPT 496 (529)
T ss_dssp -EEEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTT-CTTSCCCCHH----HHHHHHTC---CCCE
T ss_pred -ceEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHhcC-CcccccchHH----HHHHHHcC---CCCC
Confidence 689999999999999999999999999999942 34 33332 57 99999999 9998
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=4e-59 Score=473.77 Aligned_cols=274 Identities=24% Similarity=0.350 Sum_probs=204.2
Q ss_pred eecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCc--ccee----ecccCCCceeeecCCHHHHHHH
Q 043787 49 DLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR--DYLV----PSRVQPGTFYALPQSPQLFKQM 122 (452)
Q Consensus 49 dlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~--~~~v----~~~~~~g~~~~L~qSpQl~kq~ 122 (452)
+.|++ .++++++||+++++||+||.+ +||+||+||+|++++++||+ .|.+ |++.. +..+||+||||||||+
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~-~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~-~~~~yL~~Spql~~k~ 103 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQ-GMNLWLMTSPEYHMKR 103 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSC-CEEEEECSCSHHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHH-CCCEEEECCEEEecCCCCCccceEEEEecCccccc-CCCEeecCCHHHHHHH
Confidence 44555 889999999999999999998 99999999999999988764 3333 33322 2446799999999999
Q ss_pred HhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHh
Q 043787 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY 202 (452)
Q Consensus 123 Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~ 202 (452)
||++|++||||||||||||+++++|+||||||||||+|++++++|+++|+||+++++ ..||+||||.|||++|
T Consensus 104 l~~~g~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~-------~~~~~rity~ea~~~~ 176 (345)
T 3a5y_A 104 LLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-------CPAAESLSYQQAFLRY 176 (345)
T ss_dssp HHHTTCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC-------CCCCEEEEHHHHHHHH
T ss_pred HHHcCCCcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc-------CCCCcEeeHHHHHHHH
Confidence 999999999999999999999777779999999999999999999999999999996 1489999999999999
Q ss_pred -CCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEec
Q 043787 203 -GSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLD 281 (452)
Q Consensus 203 -g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 281 (452)
|+|+|+.. . .+ +.+.+++.| +.|+...+
T Consensus 177 ~g~d~~~~~----~---~~-----------------------------------------l~~~~~~~g---~~~~~~~~ 205 (345)
T 3a5y_A 177 LEIDPLSAD----K---TQ-----------------------------------------LREVAAKLD---LSNVADTE 205 (345)
T ss_dssp TCCCTTCCC-----------------------------------------------------------------------
T ss_pred hCCCCCCCC----H---HH-----------------------------------------HHHHHHHcC---CcccCCCc
Confidence 77765310 0 00 001111111 11111000
Q ss_pred CCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCcc
Q 043787 282 AGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEW 361 (452)
Q Consensus 282 ~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~ 361 (452)
+ .++ .+. ...|+ ..+...+| ..+|+||+|||++.
T Consensus 206 ~-----------~~~-----~~~---------------------e~~l~---~~ve~~lg-----~~~p~fv~dyP~~~- 239 (345)
T 3a5y_A 206 E-----------DRD-----TLL---------------------QLLFT---FGVEPNIG-----KEKPTFVYHFPASQ- 239 (345)
T ss_dssp --------------------HHH---------------------HHHHH---HHTGGGSS-----SSSCEEEECCBGGG-
T ss_pred C-----------CHh-----HHH---------------------HHHHH---HHHHHHcC-----CCCEEEEECCChhh-
Confidence 0 000 000 01111 01111222 25799999999973
Q ss_pred CcccccccccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHc-------CCCHHHHhhhh
Q 043787 362 NDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIV-------GISPEQFIFAE 434 (452)
Q Consensus 362 ~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~l-------g~~~~~~~~~f 434 (452)
.||++++++|.. .+++|||++||+||+|||+||||++.|++.|+.. |++++++++
T Consensus 240 -----------~~~~~~~~~~~~-----~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~-- 301 (345)
T 3a5y_A 240 -----------ASLAQISTEDHR-----VAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQ-- 301 (345)
T ss_dssp -----------CTTBCBCSSCTT-----BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCH--
T ss_pred -----------ChhhCCCCCCCC-----eEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHH--
Confidence 589888765542 5899999999999999999999999999999875 898888852
Q ss_pred hhhhhhhhcCCCCCCCC
Q 043787 435 VVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 435 ~~~l~a~~~G~~~~~p~ 451 (452)
+||+||+|| ||||
T Consensus 302 -~yl~al~yG---~PPh 314 (345)
T 3a5y_A 302 -NLIEALKVG---MPDC 314 (345)
T ss_dssp -HHHHHHHHC---CCSE
T ss_pred -HHHHHHhcC---CCCC
Confidence 399999999 9999
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=7.4e-52 Score=412.60 Aligned_cols=239 Identities=23% Similarity=0.387 Sum_probs=208.1
Q ss_pred ccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeec--------CCCCCccceeecccCCCceeeecCC
Q 043787 44 RYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRS--------TPEGARDYLVPSRVQPGTFYALPQS 115 (452)
Q Consensus 44 ~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~--------~~eGa~~~~v~~~~~~g~~~~L~qS 115 (452)
+|||||+|++ +++++++|+++++++|+||.+ +||+||+||+|+++ .+||++.|.++. .++.++|+||
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~-~GF~EVeTP~l~~~~~~~~~~~~~e~a~~f~~~~---~~~~~~L~~S 75 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVK-EGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEI---YGVKMRLTHS 75 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHH-TTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEE---TTEEEEECSC
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHH-CCCEEEECCEEEEccchhccCCCCCcceeEEEEc---CCCCEEeccC
Confidence 5899999999 999999999999999999988 99999999999999 889988777653 3677899999
Q ss_pred HHHHHHHHhhcCCCceEEEeeeeecCC--CCCCCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhc---CCCCC--
Q 043787 116 PQLFKQMLMVSGFDKYYQIARCFRDED--LRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK---DVQLP-- 187 (452)
Q Consensus 116 pQl~kq~Lm~~g~~rvfqi~~~FR~E~--~~~~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~---~~~l~-- 187 (452)
||+|+|+++++|++||||||||||+|+ +++.|| |||||||+|++|.+++++|+++|+|++++++.+. +..+.
T Consensus 76 pe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~~~~i~~~ 155 (294)
T 1nnh_A 76 MILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKT 155 (294)
T ss_dssp SHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred hHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 999999999999999999999999999 887777 7999999999999999999999999999998765 33332
Q ss_pred CCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHH
Q 043787 188 NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAI 267 (452)
Q Consensus 188 ~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~ 267 (452)
.+|+|+||.||++.||. +++
T Consensus 156 ~~~~r~~y~ea~~~~g~-------------------~~e----------------------------------------- 175 (294)
T 1nnh_A 156 KRFEVFEYSEVLEEFGS-------------------DEK----------------------------------------- 175 (294)
T ss_dssp SSCEEEEHHHHHHHTSS-------------------HHH-----------------------------------------
T ss_pred CCceEeEHHHHHHHhCC-------------------hHh-----------------------------------------
Confidence 34999999999986542 000
Q ss_pred HcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCC
Q 043787 268 KSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSK 347 (452)
Q Consensus 268 ~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~ 347 (452)
| ++..
T Consensus 176 -----------------------------------------------------------------r---~~~~------- 180 (294)
T 1nnh_A 176 -----------------------------------------------------------------A---SQEM------- 180 (294)
T ss_dssp -----------------------------------------------------------------H---HHHC-------
T ss_pred -----------------------------------------------------------------h---hhhc-------
Confidence 0 0111
Q ss_pred ccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeec-Ce-EeeccccccccHHHHHHHHHHcCC
Q 043787 348 HSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYN-GV-EIGGGSLRIYKREVQQKVLEIVGI 425 (452)
Q Consensus 348 ~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlN-G~-EiGGGSiRIh~~elQ~~if~~lg~ 425 (452)
.+++||+||| +|||+|. |. . .+.+|||++| |+ ||+|||+|+||++.|.+.|+..|+
T Consensus 181 ~~P~~v~~~P---------------~pf~~~~--d~---~--~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~ 238 (294)
T 1nnh_A 181 EEPFWIINIP---------------REFYDRE--VD---G--FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGL 238 (294)
T ss_dssp SSCEEEECCC---------------CCTTBCE--ET---T--EECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTC
T ss_pred CCCEEEEcCC---------------hHHhCCC--CC---C--eEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCC
Confidence 3689999999 6899996 32 2 6899999999 99 999999999999999999999999
Q ss_pred CHHHHhhhhhhhhhhhhcCCCCCC-CC
Q 043787 426 SPEQFIFAEVVAIPALSSGDFNCQ-PQ 451 (452)
Q Consensus 426 ~~~~~~~~f~~~l~a~~~G~~~~~-p~ 451 (452)
+++..+| ||+|++|| +| ||
T Consensus 239 ~~~~~~~----~l~~l~~G---~p~P~ 258 (294)
T 1nnh_A 239 NEDSFRP----YLEIAKAG---KLKPS 258 (294)
T ss_dssp CGGGGHH----HHHHHHTT---CCCCE
T ss_pred CccCHHH----HHHHHhcC---CCCCc
Confidence 9998777 99999999 88 98
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.89 E-value=1.8e-24 Score=214.59 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=128.4
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHH-----HHHHHHHHHHHHhhc
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILL-----RHKVVKLIRRYLEDV 76 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~-----Rs~i~~~iR~ff~~~ 76 (452)
++|++||+|++++|||+|..++|+++++ . ..++++||||+|++.++++++. ++++.+.+|++|..
T Consensus 23 ~~~~~ei~~~~~~vl~~a~~~~P~~~~~-------~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~- 92 (290)
T 3qtc_A 23 APALTKSQTDRLEVLLNPKDEISLNSGK-------P--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVD- 92 (290)
T ss_dssp -CCCCHHHHHHHHHHCCTTCC----CCS-------C--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-
T ss_pred CCceEEEEhhhhhhhccCCCCCCCCcch-------h--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHH-
Confidence 4689999999999999987789998742 2 3499999999999999999999 99999999999998
Q ss_pred CCeEEEcCceEeecCCC------CCcccee-ecccCCCceeeec--CCHHHHHHHHhh----cCCCceEEEeeeeecCCC
Q 043787 77 HGFVEIETPVLSRSTPE------GARDYLV-PSRVQPGTFYALP--QSPQLFKQMLMV----SGFDKYYQIARCFRDEDL 143 (452)
Q Consensus 77 ~gF~EV~TPiL~~~~~e------Ga~~~~v-~~~~~~g~~~~L~--qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~ 143 (452)
.||.||.||+|+++++. +..++.. ...+ +..++|+ +|||+++++.+. .+..|+|+||+|||+|+.
T Consensus 93 ~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~ 170 (290)
T 3qtc_A 93 RGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV--DKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD 170 (290)
T ss_dssp TTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE--TTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC
T ss_pred CCCEEEECCceeeHHHHHhcCCCcCCchhhhheee--CCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC
Confidence 99999999999987642 1111111 1111 3567899 999999887653 556899999999999988
Q ss_pred CCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHH
Q 043787 144 RADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRK 176 (452)
Q Consensus 144 ~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~ 176 (452)
+++|.+||||+|+++++. ++.++..+++++++.
T Consensus 171 ~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~ 205 (290)
T 3qtc_A 171 GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNH 205 (290)
T ss_dssp SSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred CCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHH
Confidence 877889999999999996 577777777766653
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.33 E-value=9.1e-11 Score=115.75 Aligned_cols=145 Identities=18% Similarity=0.313 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHh-----hcCCeEEEcCceEeecCCC------C-CccceeecccCCCceeeecCCHHHHHHHHhh
Q 043787 58 NILLRHKVVKLIRRYLE-----DVHGFVEIETPVLSRSTPE------G-ARDYLVPSRVQPGTFYALPQSPQLFKQMLMV 125 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~-----~~~gF~EV~TPiL~~~~~e------G-a~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~ 125 (452)
.++.....+..+++||. . .|+++|.+|+++..+.. | -++.-+.....++..+-+.+|--.+|++.+.
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~-L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~ 82 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEER-LGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLG 82 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh-cCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHH
Confidence 35667788889999998 6 89999999999886432 2 1222222222247777899999999999776
Q ss_pred c-CC---CceEEEeeeeecCCC-CCCCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcC------------CCCC
Q 043787 126 S-GF---DKYYQIARCFRDEDL-RADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKD------------VQLP 187 (452)
Q Consensus 126 ~-g~---~rvfqi~~~FR~E~~-~~~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~------------~~l~ 187 (452)
. |+ +.+|+-.++-|.|+. -..+| -+|+|.|||.+....+..++.+++.++.|+..+.. ..++
T Consensus 83 ~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~~~~~~y~l~p~Lp 162 (330)
T 12as_A 83 QHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLP 162 (330)
T ss_dssp HTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSC
T ss_pred hCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCC
Confidence 4 47 899999999997543 33445 79999999999998888999999998877765431 1245
Q ss_pred CCCceeeHHHHHHHhC
Q 043787 188 NPFPRLTYAEAMSRYG 203 (452)
Q Consensus 188 ~pf~rity~eA~~~~g 203 (452)
.+|..+|.+|+.++|+
T Consensus 163 ~~i~fitsqeL~~~YP 178 (330)
T 12as_A 163 DQIHFVHSQELLSRYP 178 (330)
T ss_dssp SSCEEEEHHHHHHHSS
T ss_pred CceEEEeHHHHHHHcC
Confidence 5666666766666664
No 20
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.98 E-value=3.2e-09 Score=107.62 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecC--------CC--CCc---c-ceeecccCC---------Ccee--eecCCH
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRST--------PE--GAR---D-YLVPSRVQP---------GTFY--ALPQSP 116 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~--------~e--Ga~---~-~~v~~~~~~---------g~~~--~L~qSp 116 (452)
.+++.+.+|++|.. .||.||.+|.+.+.. |. .|+ + |.+...... .... ..++||
T Consensus 103 ~~~~~~~Ir~~f~~-~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 103 ITLMERELVEIFRA-LGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHHHT-TTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHHHH-CCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchH
Confidence 57788999999998 999999999997631 11 111 1 222111000 0222 346788
Q ss_pred HHHHHHHhhcC--CCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHHHH
Q 043787 117 QLFKQMLMVSG--FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 117 Ql~kq~Lm~~g--~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~i~ 178 (452)
.+.. . |+.+ --|+|+||+|||+|+.+++|.|||+|||+.+++. ++.+++..++.+++.++
T Consensus 182 ~llr-~-l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lf 245 (350)
T 1b7y_A 182 MQVR-Y-MVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALF 245 (350)
T ss_dssp HHHH-H-HHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHS
T ss_pred HHHH-H-HHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhc
Confidence 8763 3 3433 3589999999999876676779999999999985 89999999999988765
No 21
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.94 E-value=3e-09 Score=105.40 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCccc--eeecccCCC-----ceeeecC--CHHHHHHHHhhcC---
Q 043787 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGARDY--LVPSRVQPG-----TFYALPQ--SPQLFKQMLMVSG--- 127 (452)
Q Consensus 61 ~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~~~--~v~~~~~~g-----~~~~L~q--SpQl~kq~Lm~~g--- 127 (452)
-.+++.+.+|++|.. .||.||++|.+.+... -.+..+ -.|.+...+ ....|++ ||.+ ++. ++.+
T Consensus 54 ~~~~~~~~iR~~l~~-~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~l-l~~-l~~N~~~ 130 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLG-LGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQ-ART-MEKRNGQ 130 (294)
T ss_dssp HHHHHHHHHHHHHHT-TTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHH-HHH-HHHTTTC
T ss_pred HHHHHHHHHHHHHHH-CCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHH-HHH-HHhcCCC
Confidence 457789999999998 9999999999976410 001000 011111011 1123544 5665 333 5655
Q ss_pred -CCceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHH
Q 043787 128 -FDKYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 128 -~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~ 178 (452)
..|+|+||+|||+++.++.|.|||+||++.+++ +++.+++..+|.+++.++
T Consensus 131 ~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 131 GPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLF 184 (294)
T ss_dssp SCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 679999999999876555556999999999999 689999999999998765
No 22
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=98.70 E-value=4.6e-08 Score=96.67 Aligned_cols=110 Identities=18% Similarity=0.312 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC--c-ccee-ecccCCCceeeecC--CHHHHH--HHHhhcCCC--
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA--R-DYLV-PSRVQPGTFYALPQ--SPQLFK--QMLMVSGFD-- 129 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa--~-~~~v-~~~~~~g~~~~L~q--SpQl~k--q~Lm~~g~~-- 129 (452)
.++.+.+|++|.. .||.||.||.|++.. ..|. . +... .... +..++|++ +|.+.. .. +...-.
T Consensus 74 ~~l~~~ir~~~~~-~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl--~e~~~LRp~l~p~l~~~~r~-~~~~~~~P 149 (288)
T 3dsq_A 74 LELEEKLAKALHQ-QGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWL--DGKKCLRPMLAPNLYTLWRE-LERLWDKP 149 (288)
T ss_dssp HHHHHHHHHHHHT-TTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEE--ETTEEECSCSHHHHHHHHHH-HTTTSCSC
T ss_pred HHHHHHHHHHHHH-CCCEEEECCeeecHHHHhhcCCCcccccEEeeccc--ccchhhhhcChHHHHHHHHH-HHhCCCCC
Confidence 6789999999988 999999999998753 1111 1 1111 0011 12357874 476652 22 222223
Q ss_pred -ceEEEeeeeecCCCCCCCCcceeeeeeeecCC----CHHHHHHHHHHHHHH
Q 043787 130 -KYYQIARCFRDEDLRADRQPEFTQLDMELAFT----PLDDMLRLNEDLIRK 176 (452)
Q Consensus 130 -rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~----~~~dlm~~~E~li~~ 176 (452)
|+|++|+|||+|..+..|.+||+|+|++.... ++.+++..++++++.
T Consensus 150 lrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~ 201 (288)
T 3dsq_A 150 IRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEA 201 (288)
T ss_dssp EEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHH
Confidence 89999999999999988889999999999875 355566666555543
No 23
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.52 E-value=1.3e-07 Score=98.25 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--------CCCccceeecccCCCceeee-cCCHHHHHHH----
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--------EGARDYLVPSRVQPGTFYAL-PQSPQLFKQM---- 122 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--------eGa~~~~v~~~~~~g~~~~L-~qSpQl~kq~---- 122 (452)
..-.+++.++.+.+++.+.. .||.||.||+|..... ..+.+.+ ++ .+..++| |+|.+-+-.+
T Consensus 169 p~ga~l~~~L~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy---~~-~~~~l~LrPt~e~~i~~~~~~~ 243 (425)
T 2dq3_A 169 GWGARLERALINFMLDLHTK-KGYKEICPPHLVKPEILIGTGQLPKFEEDLY---KC-ERDNLYLIPTAEVPLTNLYREE 243 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHH-TTCEEEECCSEECHHHHHHHSCTTTTGGGSC---BC-TTTCCEECSSTHHHHHGGGTTE
T ss_pred cHHHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHHHhcCCCCcChhhhe---Ee-cCCeEEEcCCCcHHHHHHHHhh
Confidence 44578899999999999987 9999999999988651 1122222 11 1334456 6666533322
Q ss_pred Hhhc--CCCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 123 LMVS--GFDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 123 Lm~~--g~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
++.. -.-|+|++++|||+|.+.+ .|..||+|+|++. |.+.++..+..++++..+.
T Consensus 244 i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~~ 307 (425)
T 2dq3_A 244 ILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDAE 307 (425)
T ss_dssp EEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred ccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHHH
Confidence 2221 1469999999999998652 2788999999965 5555666655566654433
No 24
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.51 E-value=3.3e-07 Score=95.97 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC-----Cccce-eecccCCCceeeecCC-----HHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG-----ARDYL-VPSRVQPGTFYALPQS-----PQLFK 120 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG-----a~~~~-v~~~~~~g~~~~L~qS-----pQl~k 120 (452)
+-.-.+++.+|.+.+|+.|.. .||.||.||+|.+... .| ..+.+ +..+ .++.++|... +.+++
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~-~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~--~~~~~~LrPt~ee~t~~i~r 139 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNR-AGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADR--HKRELLYGPTNEEMITEIFR 139 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECT--TCCEEEECSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-cCCEEEEcCccCcHHHHHhcCCccccccceEEEEeC--CCCeEEECCCChHHHHHHHH
Confidence 445688999999999999988 9999999999988641 12 12222 2222 4677888642 34455
Q ss_pred HHHhhc--CCCceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHH---HHHHHHH
Q 043787 121 QMLMVS--GFDKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDL---IRKIFLE 180 (452)
Q Consensus 121 q~Lm~~--g~~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~l---i~~i~~~ 180 (452)
..+... ---|+|||++|||+| ..+.. |..||+|.|+|....+.+++-..+..+ ...+++.
T Consensus 140 ~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~ 207 (458)
T 2i4l_A 140 AYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFAR 207 (458)
T ss_dssp HHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 443211 125999999999999 66666 889999999999887777665555544 5555543
No 25
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.50 E-value=3.1e-07 Score=94.42 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC-----CccceeecccCCCceeeecCCHHHHHHHHhhc--
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG-----ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVS-- 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG-----a~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~-- 126 (452)
.-.+++..|.+.+|+.|.. .||.||.||+|.+..- .| ..+.+...+ .+..++|+-......=.+.+.
T Consensus 28 ~g~~~~~~i~~~~~~~~~~-~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~--~~~~~~LrP~~~~~~~~~~~~~~ 104 (401)
T 1evl_A 28 DGWTIFRELEVFVRSKLKE-YQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS--ENREYCIKPMNCPGHVQIFNQGL 104 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEE--TTEEEEECSCSHHHHHHHHTSSC
T ss_pred hHHHHHHHHHHHHHHHHHH-cCCEEEECCeeccHHHHHhcCcHhhhchhhEeEec--CCceEEEcCCCCHHHHHHHHhhh
Confidence 3478899999999999988 9999999999988641 12 112222222 466778854332222121221
Q ss_pred -----CCCceEEEeeeeecCCC--CCC--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 127 -----GFDKYYQIARCFRDEDL--RAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 127 -----g~~rvfqi~~~FR~E~~--~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
---|+||||+|||+|.+ +.. |..||+|.|+| +|.+.+++....++++.
T Consensus 105 ~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~e~i~ 161 (401)
T 1evl_A 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAH-IFCTEEQIRDEVNGCIR 161 (401)
T ss_dssp CBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEE-EEECGGGHHHHHHHHHH
T ss_pred hhhhhCChhhccccceecCCCCcccccccccCcEEecceE-EeCCHHHHHHHHHHHHH
Confidence 12599999999999986 555 88999999999 46666666655444443
No 26
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.39 E-value=3.6e-06 Score=85.05 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC-----C-----Cccce-eecccCCCceeeec--CCHHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-----G-----ARDYL-VPSRVQPGTFYALP--QSPQLFKQ 121 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-----G-----a~~~~-v~~~~~~g~~~~L~--qSpQl~kq 121 (452)
+-.-.+.+..+.+.+|+.|.. .||.||.||++...+.= | ..+.+ ..++ .|+.+.|+ ..|++..-
T Consensus 32 lP~~~~~~~~i~~~i~~~~~~-~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~--~g~~l~LRpd~T~~~aR~ 108 (344)
T 1z7m_A 32 TLNQVKSLRQIEGRLRKLFSL-KNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKH--EGQSITLRYDFTLPLVRL 108 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECT--TCCEEEECCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCEEecCcccCcHHHHhhccCCccccccccEEEEECC--CCCEEecCCCCcHHHHHH
Confidence 345578899999999999988 99999999999875310 1 12322 2222 46777785 23444433
Q ss_pred HHhh--cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCH
Q 043787 122 MLMV--SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPL 163 (452)
Q Consensus 122 ~Lm~--~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~ 163 (452)
.... ...-|+|+|++|||+|..+..|.-||+|+++|....+.
T Consensus 109 ~~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~ 152 (344)
T 1z7m_A 109 YSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESA 152 (344)
T ss_dssp HHTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCH
T ss_pred HHhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCC
Confidence 2211 12359999999999998888888999999999988754
No 27
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.35 E-value=3.6e-06 Score=87.23 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---C-CCC---ccce-eecccCCCceeeecC--CHHHHHHHHhhc
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---P-EGA---RDYL-VPSRVQPGTFYALPQ--SPQLFKQMLMVS 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~-eGa---~~~~-v~~~~~~g~~~~L~q--SpQl~kq~Lm~~ 126 (452)
.-.+.+.+|.+.+|+.|.. .||.||.||+|.... . -|. .+.+ ..++ .|+.+.|+- .|++..-.....
T Consensus 18 ~~~~~~~~i~~~i~~~~~~-~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~--~g~~l~LrPd~t~~~aR~~~~~~ 94 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEA-FGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDK--GGREVTLIPEATPSTVRMVTSRK 94 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECT--TSCEEEECSCSHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEeeccccccHHHhhhccCCccccceEEEECC--CCCEEEeCCCChHHHHHHHHhcC
Confidence 4468899999999999988 999999999998853 1 121 2222 2232 477788852 344444332111
Q ss_pred ---CCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 043787 127 ---GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180 (452)
Q Consensus 127 ---g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~ 180 (452)
..-|+|||++|||+|..+..|.-||+|.++|....+....-..+-.++..+++.
T Consensus 95 ~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~ 151 (434)
T 1wu7_A 95 DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDR 151 (434)
T ss_dssp TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHH
Confidence 135999999999999888888899999999999875433322222444555544
No 28
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=98.30 E-value=3.5e-06 Score=90.40 Aligned_cols=122 Identities=21% Similarity=0.237 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC-----Cccce-eecccCCCceeee-cCCHH----HHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG-----ARDYL-VPSRVQPGTFYAL-PQSPQ----LFK 120 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG-----a~~~~-v~~~~~~g~~~~L-~qSpQ----l~k 120 (452)
+-.-.+++.+|.+.+|+.|.. .||.||.||+|....- .| ..+.+ ...+ .++.++| |.+-+ +++
T Consensus 43 lP~g~~~~~~i~~~~~~~~~~-~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~--~~~~~~LrP~~~~~~~~~~~ 119 (572)
T 2j3l_A 43 LPLANRVLEKLKTIMREEFEK-IDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDR--NDRDYILGPTHEETFTELIR 119 (572)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT-TTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECT--TCCEEEECSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHHHhcCCccccchheEEEecC--CCCeEEEccccHHHHHHHHH
Confidence 345688999999999999988 9999999999987641 12 11222 2222 4677888 44433 444
Q ss_pred HHHhh--cCCCceEEEeeeeecCCCC-CC--CCcceeeeeeeecCCCHHHHHHHHHHH---HHHHHH
Q 043787 121 QMLMV--SGFDKYYQIARCFRDEDLR-AD--RQPEFTQLDMELAFTPLDDMLRLNEDL---IRKIFL 179 (452)
Q Consensus 121 q~Lm~--~g~~rvfqi~~~FR~E~~~-~~--r~~EFtqLe~e~~f~~~~dlm~~~E~l---i~~i~~ 179 (452)
..+.. .---|+||+++|||+|.+. .. |..||+|.|+|....+.+++...++.+ ...+++
T Consensus 120 ~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~ 186 (572)
T 2j3l_A 120 DEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFE 186 (572)
T ss_dssp HHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44211 1124999999999999884 33 789999999999888777776666554 444444
No 29
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=98.29 E-value=4.6e-06 Score=85.97 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---C-CC------ccce-eecccCCCceeeec--CCHHHHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---E-GA------RDYL-VPSRVQPGTFYALP--QSPQLFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---e-Ga------~~~~-v~~~~~~g~~~~L~--qSpQl~kq~L 123 (452)
.-.+.+.++.+.+|+.|.. .||.||.||+|...+. . |. .+.+ ..++ .|+.+.|+ ..|++..-..
T Consensus 16 ~~~~~~~~i~~~i~~~~~~-~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~--~g~~l~Lrpd~t~~~aR~~~ 92 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGS-YGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR--NGDSLTLRPEGTAGCVRAGI 92 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECT--TSCEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcC--CCCEEEeCCCchHHHHHHHH
Confidence 3467889999999999988 9999999999987531 1 22 1222 2233 47778885 2344443322
Q ss_pred hh----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 124 MV----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 124 m~----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
.. ...-|+|||++|||+|..+..|.-||+|.|+|....+....-..+-.++..+++.+
T Consensus 93 ~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~l 154 (423)
T 1htt_A 93 EHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRAL 154 (423)
T ss_dssp HHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHC
Confidence 11 11359999999999998888888999999999998754332222224555555443
No 30
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.28 E-value=2.6e-06 Score=89.39 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHH-hhcCCeEEEcCceEeecCC---CCC-----ccce-eecccCCCceeee-cCCHHHHHHHHhh
Q 043787 57 HNILLRHKVVKLIRRYL-EDVHGFVEIETPVLSRSTP---EGA-----RDYL-VPSRVQPGTFYAL-PQSPQLFKQMLMV 125 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff-~~~~gF~EV~TPiL~~~~~---eGa-----~~~~-v~~~~~~g~~~~L-~qSpQl~kq~Lm~ 125 (452)
.-.+++..|.+.+|+.+ .+ .||.||.||+|.+..- .|- .+.+ +..+...+..++| |.+-+-+-.+ ..
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~-~~ 139 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFK-FGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLI-FG 139 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHH-HT
T ss_pred cHHHHHHHHHHHHHHHHHHh-cCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHH-HH
Confidence 45788999999999999 88 9999999999987641 121 1222 2221112466788 4553333333 22
Q ss_pred cC-------CCceEEEeeeeecCCCC--CC--CCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 126 SG-------FDKYYQIARCFRDEDLR--AD--RQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 126 ~g-------~~rvfqi~~~FR~E~~~--~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
.. --|+||+++|||+|.+. .. |..||+|.|++. |++.+++.+.+++++..+.
T Consensus 140 ~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~ 202 (460)
T 3uh0_A 140 KKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLID 202 (460)
T ss_dssp TSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred hccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHHHHHH
Confidence 21 24899999999999885 44 889999999995 6766777776666554443
No 31
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.27 E-value=3.4e-06 Score=91.97 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC-----ccceeecccCCC-ceeeec-CCHHHHHHHHhh
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA-----RDYLVPSRVQPG-TFYALP-QSPQLFKQMLMV 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa-----~~~~v~~~~~~g-~~~~L~-qSpQl~kq~Lm~ 125 (452)
-.-.+++..+.+.+|+.+.. .||.||.||+|.+..- .|. .+.+.... ..+ +.|+|. .+-+-+..+. +
T Consensus 268 P~g~~~~~~l~~~ir~~~~~-~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d-~~~~~~~~LrP~~~~~~~~~~-~ 344 (645)
T 1nyr_A 268 PNGATIRREIERYIVDKEVS-MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQ-LDETESMVLRPMNCPHHMMIY-A 344 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEE-ETTTEEEEECSSSHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHHHHHH-cCCEEEECCeeccHHHHhhCCCccccccCcceeEe-cCCCeEEEeCCCCCHHHHHHH-H
Confidence 45688999999999999988 9999999999987641 121 12222111 135 678884 3333333332 2
Q ss_pred cC-------CCceEEEeeeeecCCCCC--C--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 126 SG-------FDKYYQIARCFRDEDLRA--D--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 126 ~g-------~~rvfqi~~~FR~E~~~~--~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
.. --|+||||+|||+|.++. . |..||||.|+|. |.+.+.+.+.+.+++.
T Consensus 345 ~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~ 404 (645)
T 1nyr_A 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVN 404 (645)
T ss_dssp TSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHH
Confidence 11 249999999999998863 3 779999999997 6566655554444443
No 32
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.26 E-value=2.4e-06 Score=87.87 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---C-CCc------cce-eecccCCCceeeec-CC-HHHHH---
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---E-GAR------DYL-VPSRVQPGTFYALP-QS-PQLFK--- 120 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---e-Ga~------~~~-v~~~~~~g~~~~L~-qS-pQl~k--- 120 (452)
.-.+++..+.+.+|+.|.. .||.||.||+|..... . |.+ +.+ +.++ .|+.++|+ .+ |++..
T Consensus 14 ~~~~~~~~i~~~~~~~~~~-~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~--~g~~~~Lrp~~t~~~~r~~~ 90 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTF-YNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK--GDRSITLRPEGTAAVVRSYI 90 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCEECBCCSEEEHHHHCC-----------CCEEECHH--HHCCEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEccCcccchHHHhhhccCCccchhhhheEEEEcC--CCCEEEeCCCChHHHHHHHH
Confidence 3468889999999999988 9999999999988541 1 221 222 2122 25567774 22 33322
Q ss_pred HHHhh---cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 121 QMLMV---SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 121 q~Lm~---~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
+.... ...-|+||+++|||+|..+..|..||+|+|+|..+.+
T Consensus 91 ~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 91 EHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp HTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCC
T ss_pred hccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCC
Confidence 21111 1236999999999999888888899999999998874
No 33
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.26 E-value=4.9e-06 Score=85.72 Aligned_cols=121 Identities=19% Similarity=0.276 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---C-CC------ccce-eecccCCCceeeec--CCHHHHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---E-GA------RDYL-VPSRVQPGTFYALP--QSPQLFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---e-Ga------~~~~-v~~~~~~g~~~~L~--qSpQl~kq~L 123 (452)
.-.+.+.++.+.+|+-|.. .||.||.||++...+. . |. .+.+ ..++ .|+.+.|+ ..|++..-..
T Consensus 15 ~~~~~~~~i~~~i~~~~~~-~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~--~g~~l~Lrpd~t~~~ar~~~ 91 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEA-AGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR--GGRSLTLRPEGTAAMVRAYL 91 (421)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEecccccccHHHhhhccCCcccccccceEEEECC--CCCEEeeCCcchHHHHHHHH
Confidence 3467889999999999988 9999999999987531 1 22 1222 2222 46777785 2344444322
Q ss_pred hh-----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 043787 124 MV-----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180 (452)
Q Consensus 124 m~-----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~ 180 (452)
.. .-.-|+|||++|||+|..+..|.-||+|.++|....+....-..+-.++..+++.
T Consensus 92 ~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~ 153 (421)
T 1h4v_B 92 EHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKE 153 (421)
T ss_pred hccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHH
Confidence 11 1136999999999999888888899999999998875433322333445555544
No 34
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=98.25 E-value=1.2e-06 Score=88.04 Aligned_cols=114 Identities=18% Similarity=0.282 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCcc--ceeecccCCCce-----eee--cCCHHHHHHHHhhcCC--C
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GARD--YLVPSRVQPGTF-----YAL--PQSPQLFKQMLMVSGF--D 129 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~~--~~v~~~~~~g~~-----~~L--~qSpQl~kq~Lm~~g~--~ 129 (452)
-+.+.+.||++|.. .||.|+.+|.+.+.... .+-. --.|.|.....+ -.| ++||.+-. . |..+- -
T Consensus 109 ~~~~~~~Ir~if~~-~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~lr-~-l~~~~~pi 185 (327)
T 3pco_A 109 VTRTIDRIESFFGE-LGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIR-T-MKAQQPPI 185 (327)
T ss_dssp HHHHHHHHHHHHHT-TTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHHH-H-HTTCCSSC
T ss_pred HHHHHHHHHHHHHH-CCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHHH-H-HHhCCCCe
Confidence 36678899999998 99999999998654311 1100 011212101111 134 56787643 3 34433 4
Q ss_pred ceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~~ 179 (452)
|+|++|+|||.+ .+.+|.|+|+|+|+.++. +++.++...+|.+++.++.
T Consensus 186 rifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg 236 (327)
T 3pco_A 186 RIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE 236 (327)
T ss_dssp CBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred eEEeeccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999997 567777999999987774 5899999999999998863
No 35
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.25 E-value=6.6e-06 Score=86.65 Aligned_cols=128 Identities=12% Similarity=0.085 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC------ccce-eecccC--CCceeeec-CCHH----H
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA------RDYL-VPSRVQ--PGTFYALP-QSPQ----L 118 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa------~~~~-v~~~~~--~g~~~~L~-qSpQ----l 118 (452)
-.-.+++..|.+.+|+.|.. .||.||.||+|.+..- +++ .+.+ +..+.. .+..++|+ .|-+ +
T Consensus 41 P~g~~l~~~I~~~~r~~~~~-~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~ 119 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKE-TGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYM 119 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHH
Confidence 34578899999999999988 9999999999988752 122 1222 222200 04567784 4433 4
Q ss_pred HHHHHhhc-C-CCceEEEeeeeecCCCCCC--CCcceeeeeeeecCCCHHHHHHHHHHH---HHHHHHHhcCC
Q 043787 119 FKQMLMVS-G-FDKYYQIARCFRDEDLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDL---IRKIFLEIKDV 184 (452)
Q Consensus 119 ~kq~Lm~~-g-~~rvfqi~~~FR~E~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~l---i~~i~~~~~~~ 184 (452)
|++.+... . --|+||||+|||+|..... |.-||+|.|++..|++.++....+..+ ...++...+|+
T Consensus 120 ~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl 192 (477)
T 1hc7_A 120 WSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAI 192 (477)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55543221 1 2599999999999965445 889999999999999988887777766 45566333454
No 36
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=98.22 E-value=7.6e-06 Score=84.30 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC---C---Cccce-eecccCCCceeeec--CCHHHHHHHHhh--
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE---G---ARDYL-VPSRVQPGTFYALP--QSPQLFKQMLMV-- 125 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e---G---a~~~~-v~~~~~~g~~~~L~--qSpQl~kq~Lm~-- 125 (452)
.-.+.+..+...+|+.|.. .||.||.||++.....= | ..+.+ ..++ .|+.+.|+ ..|++..-....
T Consensus 22 ~~~~~~~~i~~~l~~~~~~-~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~--~g~~l~LRpd~T~~~aR~~~~~~~ 98 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINL-WGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQ--QGNTLVLRPDMTAPIARLVASSLK 98 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEETTTHHHHSSSCGGGSCEEECT--TSCEEEECSCSHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEeCCccccHHHHhhcCCccccceEEEECC--CCCEEEECCCCHHHHHHHHHhhcc
Confidence 4467889999999999988 99999999999765420 1 11222 2222 46777785 234444322111
Q ss_pred --cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 126 --SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 126 --~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
...-|+|++|+|||.|..+..|.-||+|+++|....+
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCC
T ss_pred cCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCC
Confidence 1235999999999999988888899999999998864
No 37
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=98.20 E-value=1.2e-05 Score=81.97 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC---C-ccce-eecccCCCceeeec--CCHHHHHHHHh--
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG---A-RDYL-VPSRVQPGTFYALP--QSPQLFKQMLM-- 124 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG---a-~~~~-v~~~~~~g~~~~L~--qSpQl~kq~Lm-- 124 (452)
.-.+.+..+...+|+.|.. .||.||.||++...+. .| . .+.+ ..+ ..|+.+.|+ ..|++..-...
T Consensus 35 ~~~~~~~~i~~~i~~~f~~-~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D--~~g~~l~LRpd~T~~~aR~~~~~~ 111 (373)
T 3rac_A 35 DFAKRRRAVETRLLSFVED-AGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFD--GGGDAVALRPEMTPSIARMAAPRV 111 (373)
T ss_dssp THHHHHHHHHHHHHHHHHH-TTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCC--CSSSCEEECSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCeEEECCceeeHHHHhhcCCccchhceEEEEC--CCCCEEEECCcCHHHHHHHHHhcc
Confidence 3467889999999999988 9999999999977531 11 1 2222 112 246777785 23444432211
Q ss_pred --hcCCCceEEEeeeeecCCC------CCCCCcceeeeeeeecCCC
Q 043787 125 --VSGFDKYYQIARCFRDEDL------RADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 125 --~~g~~rvfqi~~~FR~E~~------~~~r~~EFtqLe~e~~f~~ 162 (452)
....-|+|++++|||+|.. +..|.-||+|+++|....+
T Consensus 112 ~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 112 AAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEE 157 (373)
T ss_dssp HTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSC
T ss_pred ccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCC
Confidence 1235799999999999988 6677789999999998765
No 38
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=98.20 E-value=7.1e-06 Score=86.11 Aligned_cols=105 Identities=17% Similarity=0.298 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---C-CC------ccce-eecccCC-Cceeeec--CCHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---E-GA------RDYL-VPSRVQP-GTFYALP--QSPQLFK 120 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---e-Ga------~~~~-v~~~~~~-g~~~~L~--qSpQl~k 120 (452)
+-.-.+++..+.+.+|+.|.. .||.||.||+|..... . |. .+.+ ...+ . |+.++|+ ..|++..
T Consensus 42 lP~~~~~~~~l~~~i~~~~~~-~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~--~~g~~l~LRPd~t~~~ar 118 (467)
T 4e51_A 42 LPQDAGLWEFFEATVKSLLRA-YGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDA--LNGENLTLRPENTAAVVR 118 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECT--TTCCEEEECSCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHhhhccCCcccccccceEEEecC--CCCCEEEeCcccHHHHHH
Confidence 344578899999999999988 9999999999987542 1 22 1222 2222 4 7778885 3344443
Q ss_pred HHHh---h-cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 121 QMLM---V-SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 121 q~Lm---~-~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
-... . ...-|+|++++|||.|.++..|.-||||+++|....+
T Consensus 119 ~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 119 AAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFA 164 (467)
T ss_dssp HHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCC
T ss_pred HHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCC
Confidence 2211 0 1135999999999999988888899999999998763
No 39
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=98.16 E-value=1.1e-05 Score=85.60 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCCc------cce-eecccCC--Cceeee-cCCHH----H
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGAR------DYL-VPSRVQP--GTFYAL-PQSPQ----L 118 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa~------~~~-v~~~~~~--g~~~~L-~qSpQ----l 118 (452)
-.-.+++..|.+.+|+.+.+ .||.||.||+|.+.. .+.++ +.+ +...... +..++| |+|-. +
T Consensus 58 P~G~~i~~~L~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~ 136 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKK-LGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPA 136 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHH
Confidence 34578899999999999988 999999999997764 12121 222 2221000 235778 56643 3
Q ss_pred HHHHHhhc-C-CCceEEEeeeeecCCCC-CC--CCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 119 FKQMLMVS-G-FDKYYQIARCFRDEDLR-AD--RQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 119 ~kq~Lm~~-g-~~rvfqi~~~FR~E~~~-~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
|++.+... . --|+||+++|||.|.+. .. |..||+|.|.+..|++.++..+.++.++..
T Consensus 137 ~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 137 YAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDL 199 (519)
T ss_dssp HHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHH
Confidence 44432211 1 35899999999999443 33 778999999999999999998888877654
No 40
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=98.16 E-value=8.1e-06 Score=85.52 Aligned_cols=118 Identities=21% Similarity=0.198 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CC-----Cccce-eecccC--CCceeeec-CCHHHHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EG-----ARDYL-VPSRVQ--PGTFYALP-QSPQLFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eG-----a~~~~-v~~~~~--~g~~~~L~-qSpQl~kq~L 123 (452)
.-.+++..|.+.+|+.|.. .||.||.||+|.+... .| +.+.+ +..+.. .+..++|+ .|-+-+-.+.
T Consensus 36 ~g~~l~~~i~~~~~~~~~~-~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~ 114 (459)
T 1nj8_A 36 YGFKIRRYTFEIIRNLLDE-SGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMM 114 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-cCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHH
Confidence 4478899999999999988 9999999999987541 12 12323 222100 14567784 4544332221
Q ss_pred ----hhc-C-CCceEEEeeeeecCCC-CCC--CCccee-eeeeeecCCCHHHHHHHHHHHHH
Q 043787 124 ----MVS-G-FDKYYQIARCFRDEDL-RAD--RQPEFT-QLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 124 ----m~~-g-~~rvfqi~~~FR~E~~-~~~--r~~EFt-qLe~e~~f~~~~dlm~~~E~li~ 175 (452)
... . --|+||||+|||+|.. ... |.-||+ |.|.+..+++.++....+++++.
T Consensus 115 ~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 115 KLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp HTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 111 1 2499999999999987 445 888999 99999999988887776544443
No 41
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=98.13 E-value=4.9e-06 Score=87.09 Aligned_cols=118 Identities=17% Similarity=0.251 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCCcccee--ecccCCCceeeec-CCHHHHHHHHhhc----
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGARDYLV--PSRVQPGTFYALP-QSPQLFKQMLMVS---- 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa~~~~v--~~~~~~g~~~~L~-qSpQl~kq~Lm~~---- 126 (452)
.-.+++.+|.+.+++.+.+ .||.||.||+|.+..- .|--+-+. .+.+ .+..++|. +|-+-+..+ ...
T Consensus 191 ~ga~l~~aL~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~-~d~~l~LrPt~e~~~~~~-~~~~~~s 267 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIE-KGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKV-EDEDLYLIPTAEHPLAGM-HANEILD 267 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEEEECCSEECHHHHHTTSCTTHHHHTCCBB-TTSSCEECSSTHHHHHHT-TTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEeCCcccCHHHHHhcCCCCCChHhhCee-cCCcEEEcCcCcHHHHHH-HHhCccC
Confidence 4578889999999999977 9999999999988641 23211110 1111 23445674 443333322 221
Q ss_pred --C-CCceEEEeeeeecCCCCCC-------CCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 127 --G-FDKYYQIARCFRDEDLRAD-------RQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 127 --g-~~rvfqi~~~FR~E~~~~~-------r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
. --|+|++++|||+|.+... |..||+|.|+. .|++.++..+..++++..+.
T Consensus 268 ~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~~~ 328 (455)
T 2dq0_A 268 GKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRNAE 328 (455)
T ss_dssp TTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHHHH
T ss_pred chhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHHHH
Confidence 1 2589999999999986432 78899999998 67766777777777765443
No 42
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=98.12 E-value=1.5e-05 Score=83.54 Aligned_cols=104 Identities=24% Similarity=0.415 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--C--CC---ccce-eecccCCCceeeec--CCHHHHHHHHh
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E--GA---RDYL-VPSRVQPGTFYALP--QSPQLFKQMLM 124 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e--Ga---~~~~-v~~~~~~g~~~~L~--qSpQl~kq~Lm 124 (452)
+-.-.++|..+...+|+.|.. .||.||.||++...+. . |. .+.+ ..++ .|+.+.|+ ..|++..-..
T Consensus 39 lP~~~~~~~~i~~~i~~~~~~-~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~--~g~~l~LRpd~T~~~aR~~~- 114 (456)
T 3lc0_A 39 PPEAMRCRRHLFDVFHATAKT-FGFEEYDAPVLESEELYIRKAGEEITEQMFNFITK--GGHRVALRPEMTPSLARLLL- 114 (456)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECS--SSCEEEECSCSHHHHHHHHH-
T ss_pred CHhHHHHHHHHHHHHHHHHHH-CCCEEEECCcEeehhhhccccccchhhceEEEEcC--CCCEEecCCcCHHHHHHHHH-
Confidence 334568899999999999988 9999999999987652 1 21 1222 2222 46777785 2344444332
Q ss_pred hcC-----CCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 125 VSG-----FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 125 ~~g-----~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
..+ .-|.|++|+|||.|..+..|.-||+|+++|..+.+
T Consensus 115 ~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 115 GKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp HSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCC
T ss_pred hcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCC
Confidence 222 35899999999999988888899999999998863
No 43
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=98.12 E-value=5.6e-06 Score=90.22 Aligned_cols=116 Identities=18% Similarity=0.245 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC-----ccceeecccCCCceeeec-CCHHHHHHHHhhc
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA-----RDYLVPSRVQPGTFYALP-QSPQLFKQMLMVS 126 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa-----~~~~v~~~~~~g~~~~L~-qSpQl~kq~Lm~~ 126 (452)
-.-.+++..|.+.+|+.+.+ .||.||.||+|.+..- .|- .+.+...+ .++.|+|. .+-+-+..+. ..
T Consensus 268 P~g~~l~~~l~~~~r~~~~~-~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~--~~~~~~LrP~~~~~~~~~~-~~ 343 (642)
T 1qf6_A 268 NDGWTIFRELEVFVRSKLKE-YQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS--ENREYCIKPMNCPGHVQIF-NQ 343 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEE--TTEEEEECSSSHHHHHHHH-TT
T ss_pred CcHHHHHHHHHHHHHHHHHH-cCCEEEECCcCccHHHHhhcCccccccccceeeec--CCceEEecCCCCHHHHHHH-Hh
Confidence 34578999999999999988 9999999999987641 121 12233222 35667784 4433333332 21
Q ss_pred C-------CCceEEEeeeeecCCC--CCC--CCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 127 G-------FDKYYQIARCFRDEDL--RAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 127 g-------~~rvfqi~~~FR~E~~--~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
. --|+||||+|||+|.+ +.. |.-||||.|++. |.+.+++...+++++..
T Consensus 344 ~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~ 403 (642)
T 1qf6_A 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRL 403 (642)
T ss_dssp SCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred hhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHH
Confidence 1 2499999999999988 444 889999999997 66666666665555443
No 44
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=98.11 E-value=7e-06 Score=86.09 Aligned_cols=105 Identities=24% Similarity=0.256 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC-----CCCCcc-ce-eeccc--C-----------CCceeeec--
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST-----PEGARD-YL-VPSRV--Q-----------PGTFYALP-- 113 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-----~eGa~~-~~-v~~~~--~-----------~g~~~~L~-- 113 (452)
-.-.+.|..+...+|+.|.. .||.||.||++...+ .+...+ .+ ...+. . .|+.+.|+
T Consensus 23 P~~~~~~~~i~~~l~~~~~~-~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd 101 (465)
T 3net_A 23 PSEKRLELYLLDTIRRVYES-YGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFD 101 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCC
Confidence 34567889999999999988 999999999995432 222233 33 22221 0 25667785
Q ss_pred CCHHHHHHHHhh----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 114 QSPQLFKQMLMV----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 114 qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
..|++..-...- ...-|.|++|+|||.|..+..|.-||+|+++|..+.
T Consensus 102 ~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~ 153 (465)
T 3net_A 102 QTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGR 153 (465)
T ss_dssp SHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECS
T ss_pred ChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECC
Confidence 234443322111 123599999999999998888889999999999886
No 45
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=98.06 E-value=1.1e-05 Score=85.54 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC------ccce-eecccC--CCceeee-cCCHH----H
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA------RDYL-VPSRVQ--PGTFYAL-PQSPQ----L 118 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa------~~~~-v~~~~~--~g~~~~L-~qSpQ----l 118 (452)
-.-.+++..|.+.+|+.+.+ .||.||.||+|.+..- +.+ .+.+ +..+.. .+..++| |+|-+ +
T Consensus 52 P~G~~i~~~L~~~~~~~~~~-~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~ 130 (518)
T 3ial_A 52 PYGFFMENAIMRLCEEEYAK-VGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSM 130 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHH
Confidence 45578899999999999988 9999999999987652 222 1333 222200 1356778 45533 3
Q ss_pred HHHHHhhc-C-CCceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 119 FKQMLMVS-G-FDKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 119 ~kq~Lm~~-g-~~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
|++.+... . --|+||+++|||+| ..... |..||+|.|.+..+++.+++.+.++.|+.
T Consensus 131 ~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~ 192 (518)
T 3ial_A 131 FSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWK 192 (518)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHH
Confidence 33332111 1 24899999999999 44444 88899999999988999999988888874
No 46
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=98.05 E-value=2.3e-05 Score=81.25 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCCcc-cee-ecccCCCceeeecCCHHHHHHHHhhc------
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGARD-YLV-PSRVQPGTFYALPQSPQLFKQMLMVS------ 126 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa~~-~~v-~~~~~~g~~~~L~qSpQl~kq~Lm~~------ 126 (452)
-.+++.+|.+.+++.+.+ .||.||.||+|.+... .|--+ |-. .+.+ .+..++|.-..+...-.++..
T Consensus 165 ga~l~~aL~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~-~d~~l~L~Pt~e~~~~~~~~~~~~s~~ 242 (421)
T 1ses_A 165 LALYELALLRFAMDFMAR-RGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI-AETDLYLTGTAEVVLNALHSGEILPYE 242 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB-TTSSEEECSSTHHHHHHTTTTCEEEGG
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEeCCceecHHHHHhcCCCCcCchhcEEE-cCCeEEEeecCcHHHHHHhcccccCch
Confidence 478899999999999987 9999999999987641 12111 110 0111 134456743333222222221
Q ss_pred -CCCceEEEeeeeecCCCC-----CC--CCcceeeeeeeecCCC-HHHHHHHHHHHHHHH
Q 043787 127 -GFDKYYQIARCFRDEDLR-----AD--RQPEFTQLDMELAFTP-LDDMLRLNEDLIRKI 177 (452)
Q Consensus 127 -g~~rvfqi~~~FR~E~~~-----~~--r~~EFtqLe~e~~f~~-~~dlm~~~E~li~~i 177 (452)
---|+|++++|||+|.+. .. |..||+|+|++..... .++..+..++++..+
T Consensus 243 ~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 243 ALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp GCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred hCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 124999999999999632 22 7799999998765444 477777666666543
No 47
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=98.00 E-value=2.1e-05 Score=83.83 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-C--CC-----ccceeecccCCCceeee-cCCHHHHHHHHhhcC
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-E--GA-----RDYLVPSRVQPGTFYAL-PQSPQLFKQMLMVSG 127 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-e--Ga-----~~~~v~~~~~~g~~~~L-~qSpQl~kq~Lm~~g 127 (452)
.-.+++.++.+.+|+.+.+ .||.||.||.|.+... + |- .+.+.. .+..||| ++|=+-+-.+ ....
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~-~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~----~~~~~~L~PT~E~~~~~l-~~~~ 346 (536)
T 3err_A 273 DLALYELALLRFAMDFMAR-RGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI----AETDLYLTGTAEVVLNAL-HSGE 346 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEE----TTTTEEECSSTHHHHHHH-TTTC
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEeccccccHHHHHhcCCcccChhhceEe----cCCCEEEccCCcHHHHHH-Hhcc
Confidence 3578899999999999988 9999999999987642 1 21 122211 1234567 5554433333 2211
Q ss_pred -------CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHH--HHHHHHHHHHHHH
Q 043787 128 -------FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLD--DMLRLNEDLIRKI 177 (452)
Q Consensus 128 -------~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~--dlm~~~E~li~~i 177 (452)
--|+|++++|||+|.+.+ -|..||+|.|++ +|+..+ +..+..++|+...
T Consensus 347 i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~-~f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 347 ILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQY-VLTEASLEASDRAFQELLENA 411 (536)
T ss_dssp EEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEE-EEECSCHHHHHHHHHHHHHHH
T ss_pred cccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEE-EEECCchHHHHHHHHHHHHHH
Confidence 248999999999997421 377899999997 565444 7888887777544
No 48
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.98 E-value=2.2e-05 Score=82.40 Aligned_cols=123 Identities=16% Similarity=0.259 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC-----ccceeecccCCCceeeec-CC-HH---HHHHHHh
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA-----RDYLVPSRVQPGTFYALP-QS-PQ---LFKQMLM 124 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa-----~~~~v~~~~~~g~~~~L~-qS-pQ---l~kq~Lm 124 (452)
-.+++..|.+.+|+.|.. .||.||.||+|.... ..|. .+.+..++ .|+.++|+ .+ |. +|++.+.
T Consensus 48 g~~~~~~i~~~~~~~~~~-~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~--~~~~l~LRP~~t~~i~~~~~~~~~ 124 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHAR-RGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDI--EGHEFAVKPMNCPYHILLFLNEVA 124 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEE--TTEEEEECSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCeeeehHHhhhccCccccccceEEEec--CCcEEEEccccHHHHHHHHHhhhh
Confidence 468899999999999988 999999999998864 1221 12232222 46777884 33 22 3333322
Q ss_pred hc----C-CCceEEEeeeeecCCCC--CC--CCcceeeeeeeecCCCHHHHHHH---HHHHHHHHHHHhcCC
Q 043787 125 VS----G-FDKYYQIARCFRDEDLR--AD--RQPEFTQLDMELAFTPLDDMLRL---NEDLIRKIFLEIKDV 184 (452)
Q Consensus 125 ~~----g-~~rvfqi~~~FR~E~~~--~~--r~~EFtqLe~e~~f~~~~dlm~~---~E~li~~i~~~~~~~ 184 (452)
.. . --|+||+|+|||+|.+. .. |.-||+|.|+|.... .+...+. +-.+...++..++|+
T Consensus 125 s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~-~~~~~de~~e~i~~~~~~l~~~lGl 195 (471)
T 3a32_A 125 KHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVP-GGRVIDVVYDVFEEMKLVLERLFKL 195 (471)
T ss_dssp HHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEE-GGGHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcC-hHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 21 2 36999999999999876 55 889999999998753 3333333 333444555553555
No 49
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.97 E-value=3.3e-05 Score=81.59 Aligned_cols=116 Identities=25% Similarity=0.357 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEcC-ceEeecC--------CC--CCcc----ceeeccc-C------------------
Q 043787 60 LLRHKVVKLIRRYLEDVHGFVEIET-PVLSRST--------PE--GARD----YLVPSRV-Q------------------ 105 (452)
Q Consensus 60 ~~Rs~i~~~iR~ff~~~~gF~EV~T-PiL~~~~--------~e--Ga~~----~~v~~~~-~------------------ 105 (452)
--.+++.+.||++|.. .||.||.| |.+..+- |+ .||+ |.+.... .
T Consensus 225 HPl~~v~~~Ir~if~~-mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g 303 (508)
T 3l4g_A 225 HPLLKVRSQFRQIFLE-MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303 (508)
T ss_dssp CHHHHHHHHHHHHHHH-TTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHH-CcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhcc
Confidence 3347788899999998 99999875 8776641 22 2332 2221100 0
Q ss_pred ----CC----------ceeeec--CCHHHHHHHHh--h-c--CCCceEEEeeeeecCCCCCCCCcceeeeeeeecC--CC
Q 043787 106 ----PG----------TFYALP--QSPQLFKQMLM--V-S--GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF--TP 162 (452)
Q Consensus 106 ----~g----------~~~~L~--qSpQl~kq~Lm--~-~--g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~ 162 (452)
.| ..-.|+ +||.+-.-+.- . . .--|+|+||+|||.|..+++|.|+|+|+|..++. ++
T Consensus 304 ~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v~ 383 (508)
T 3l4g_A 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLT 383 (508)
T ss_dssp BTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESCC
T ss_pred ccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCCCC
Confidence 00 122354 44655433311 1 1 2358999999999999999899999999998775 58
Q ss_pred HHHHHHHHHHHHHH
Q 043787 163 LDDMLRLNEDLIRK 176 (452)
Q Consensus 163 ~~dlm~~~E~li~~ 176 (452)
+.+++.+++.+++.
T Consensus 384 f~dLKg~Le~~l~~ 397 (508)
T 3l4g_A 384 LGHLMGVLREFFTK 397 (508)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887764
No 50
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.95 E-value=3.8e-05 Score=81.40 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=38.6
Q ss_pred CceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 129 ~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i 177 (452)
-|+|||++|||+| ..+.. |.-||+|.|++ .|++.++..+..+.++...
T Consensus 210 ~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~~~ 260 (505)
T 1ati_A 210 FGIAQIGKAFRNEITPRNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVEER 260 (505)
T ss_dssp EEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHHHH
T ss_pred EEEEEeeceeeCCCCCCCCCCcccceEEeeEE-EEECHHHHHHHHHHHHHHH
Confidence 5999999999999 55544 88899999999 8888888776666666543
No 51
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.95 E-value=2.1e-05 Score=83.34 Aligned_cols=119 Identities=21% Similarity=0.256 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC------ccce-eecccC--CCceeeec-CCHH----H
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA------RDYL-VPSRVQ--PGTFYALP-QSPQ----L 118 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa------~~~~-v~~~~~--~g~~~~L~-qSpQ----l 118 (452)
-.-.+++..|.+.+|+.| .. ||.||.||+|.+.. .+.+ .+.+ +..+.. .+..++|. +|-+ +
T Consensus 68 P~g~~l~~~i~~~~~~~~-~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~ 145 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRIL-DR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-Hc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHH
Confidence 345788899999999999 65 99999999998864 2111 1222 222100 03556774 4433 3
Q ss_pred HHHHHhhc-C-CCceEEEeeeeecCCC-CCC--CCccee-eeeeeecCCCHHHHHHHHHHHHHH
Q 043787 119 FKQMLMVS-G-FDKYYQIARCFRDEDL-RAD--RQPEFT-QLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 119 ~kq~Lm~~-g-~~rvfqi~~~FR~E~~-~~~--r~~EFt-qLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
|++.+... . --|+||+++|||+|.. ... |..||+ |.|++..|++.++....+++++..
T Consensus 146 ~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 146 FALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEI 209 (501)
T ss_dssp HHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHH
Confidence 34332211 1 2499999999999987 344 888999 999999999988888877666543
No 52
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.92 E-value=1.5e-05 Score=83.75 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc-------cce-eecccCCCceeee-cCCHHHHHHHHhhc
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR-------DYL-VPSRVQPGTFYAL-PQSPQLFKQMLMVS 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~-------~~~-v~~~~~~g~~~~L-~qSpQl~kq~Lm~~ 126 (452)
.-.+++.++.+.+++.+.+ +||.||.||.|.+... ++.+ +.+ +.. .+..||| ++|=+-+-.+ ...
T Consensus 206 ~GarL~~aL~~f~~d~~~~-~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~---~~~~~~L~PTaE~~l~~l-~~~ 280 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVK-RGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSG---DGDKKYLIATSEMPIAAY-HRG 280 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEES---SSSCEEECSSTHHHHHHH-TTT
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEecCccccHHHHHhcCCcccccccceEeec---CCcceEEeccCcHHHHHH-Hhc
Confidence 4578999999999999987 9999999999998652 1211 222 221 1445677 4553333222 221
Q ss_pred C-------CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHH--HHHHHHHHHHHH
Q 043787 127 G-------FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDD--MLRLNEDLIRKI 177 (452)
Q Consensus 127 g-------~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~d--lm~~~E~li~~i 177 (452)
. --|+|++++|||+|.+.. -|..||+|.|++ +|+..++ ..+..++|+...
T Consensus 281 ~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~-~f~~pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 281 RWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQF-VVCSPRQEESWRHLEDMITTS 346 (484)
T ss_dssp CEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEE-EEECSSTTHHHHHHHHHHHHH
T ss_pred cccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEE-EEeCcchHHHHHHHHHHHHHH
Confidence 1 247999999999997321 377899999996 5665555 777777776543
No 53
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.91 E-value=5e-05 Score=80.27 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC-----Cc-cceeecccCCCceeeecCCHHHHHHHHhhc
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG-----AR-DYLVPSRVQPGTFYALPQSPQLFKQMLMVS 126 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG-----a~-~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~ 126 (452)
..-.+++.++.+.+++.+.+ .||.||.||.|.+... .| .. +.+.... ..+..|||.-..+...=.+...
T Consensus 216 p~GarL~~aL~~~~~d~~~~-~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~-~~~~~l~L~PTaE~~~~~l~~~ 293 (501)
T 1wle_A 216 GAGALLQHGLVNFTLNKLIH-RGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP-SRFEDLNLAGTAEVGLAGYFMD 293 (501)
T ss_dssp THHHHHHHHHHHHHHHHHHH-TTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT-TTSSSCEECSSHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHH-cCCEEEeCCccccHHHHHhhcCCCccCccccEEEec-CCCCeEEECCcCcHHHHHHHhh
Confidence 34578889999999999987 9999999999998642 12 11 3222111 1134566754443332222221
Q ss_pred -------CCCceEEEeeeeecCCC------CCCCCcceeeeeeeecCCCH-HHHHHHHHHHHHHHH
Q 043787 127 -------GFDKYYQIARCFRDEDL------RADRQPEFTQLDMELAFTPL-DDMLRLNEDLIRKIF 178 (452)
Q Consensus 127 -------g~~rvfqi~~~FR~E~~------~~~r~~EFtqLe~e~~f~~~-~dlm~~~E~li~~i~ 178 (452)
---|+|++++|||+|.+ +--|..||+|.|++..-.+. ++..+..++|+....
T Consensus 294 ~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~ 359 (501)
T 1wle_A 294 HSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQM 359 (501)
T ss_dssp EEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 12489999999999976 12377899999997654444 688888888775433
No 54
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.89 E-value=7.8e-05 Score=77.52 Aligned_cols=103 Identities=24% Similarity=0.369 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCCccce-eecccCCCceeeecC--CHHHHHHHHhh
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGARDYL-VPSRVQPGTFYALPQ--SPQLFKQMLMV 125 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa~~~~-v~~~~~~g~~~~L~q--SpQl~kq~Lm~ 125 (452)
+-.-.+.|..+.+.+|+.|.. .||.||.||+|.... .+...+.+ ..++ .|+.+.|+- .+++-.-.. .
T Consensus 24 lP~~~~~~~~i~~~~~~~~~~-~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~--~g~~l~LRPd~T~~~aR~~~-~ 99 (464)
T 4g84_A 24 SPRQMAVREKVFDVIIRCFKR-HGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQ--GGELLSLRYDLTVPFARYLA-M 99 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHTTSCC----CCCBBCCC--SSCCEEECSCSHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHH-CCCeEEECcccCcHHHhccccCcCcceeEEEECC--CCCEEEeCCcCcHHHHHHHH-h
Confidence 445578899999999999988 999999999997642 11112222 2222 467777862 344433221 1
Q ss_pred c--CCCceEEEeeeeecCCCCC--CCCcceeeeeeeecCC
Q 043787 126 S--GFDKYYQIARCFRDEDLRA--DRQPEFTQLDMELAFT 161 (452)
Q Consensus 126 ~--g~~rvfqi~~~FR~E~~~~--~r~~EFtqLe~e~~f~ 161 (452)
. .--|.|+|++|||.|..+. .|.-||+|+++|..+.
T Consensus 100 ~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 100 NKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp TTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESC
T ss_pred cCCCCceeEEEecceeccCCccccCccceeeecceeccCC
Confidence 1 1358999999999997643 4667999999999874
No 55
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.89 E-value=3.3e-05 Score=81.18 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC-----ccce-eecccCCCceeee-cCCHHHHHHHHhhc
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA-----RDYL-VPSRVQPGTFYAL-PQSPQLFKQMLMVS 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa-----~~~~-v~~~~~~g~~~~L-~qSpQl~kq~Lm~~ 126 (452)
.-.+++.++.+.+++.+.+ .||.||.||.|.+... .|- .+.+ +..+ +..+|| ++|=.-.- .++..
T Consensus 183 ~GarL~~aL~~~~~d~~~~-~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~---~~~~~LipTaE~pl~-~l~~~ 257 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSS-KGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG---EDEKYLIATSEQPIS-AYHAG 257 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET---TEEEEECSSTHHHHH-HHTTT
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEeCCccccHHHHhhcCCccccccceEEEeCC---CCeEEEeccccHHHH-HHHhc
Confidence 4578899999999999987 9999999999998652 121 1222 2221 334555 55533222 22222
Q ss_pred C---------CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHHHHHHHHHHHHHH
Q 043787 127 G---------FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 127 g---------~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i 177 (452)
- --|+|++++|||+|.+.. -|..||+|.|++. |++.++..+..++|+...
T Consensus 258 ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 258 EWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp CEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred cccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 1 247999999999997541 3778999999975 677788888888777543
No 56
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.88 E-value=3.9e-05 Score=81.21 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC-----Cccce-eeccc------CCCceeee-cCCHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG-----ARDYL-VPSRV------QPGTFYAL-PQSPQLFK 120 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG-----a~~~~-v~~~~------~~g~~~~L-~qSpQl~k 120 (452)
.-.+++.++++.+++.+.+ .||.||.||.|.+... .| ..+.+ +..+. ..+..||| ++|=+-+.
T Consensus 199 ~GarL~raL~~f~~d~~~~-~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~ 277 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGS-RGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIA 277 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHH
Confidence 3478899999999999987 9999999999987642 12 11222 22110 01334667 45533332
Q ss_pred HHHhhc------C-CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHH--HHHHHHHHHHHH
Q 043787 121 QMLMVS------G-FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDD--MLRLNEDLIRKI 177 (452)
Q Consensus 121 q~Lm~~------g-~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~d--lm~~~E~li~~i 177 (452)
.+ ... . --|+|++++|||+|.+.. -|..||+|.|+. +|++.++ ..+..++|+...
T Consensus 278 ~l-~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~-~f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 278 AL-HRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQF-VYSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp TT-STTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEE-EEECSSTTHHHHHHHHHHHHH
T ss_pred HH-HhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEE-EEeCCChHHHHHHHHHHHHHH
Confidence 22 111 1 247999999999998532 377899999997 5554443 777777766543
No 57
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.85 E-value=9.8e-05 Score=78.25 Aligned_cols=105 Identities=26% Similarity=0.359 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCCccce-eecccCCCceeeecC--CHHHHHHHHh
Q 043787 54 QMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGARDYL-VPSRVQPGTFYALPQ--SPQLFKQMLM 124 (452)
Q Consensus 54 ~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa~~~~-v~~~~~~g~~~~L~q--SpQl~kq~Lm 124 (452)
.+-.-.++|..|.+.+|+.|.. .||.||.||++.... .+.....+ ..+ ..|+.+.|+- .+++-.-...
T Consensus 76 ~lP~~~~~~~~ie~~i~~~~~~-~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D--~~g~~l~LRPd~T~~~aR~~~~ 152 (517)
T 4g85_A 76 YSPRQMAVREKVFDVIIRCFKR-HGAEVIDTPVFELKETLMGKYGEDSKLIYDLKD--QGGELLSLRYDLTVPFARYLAM 152 (517)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHH-HTCEECBCCSEEEHHHHHCC------CSCBBCC--TTSCCEEECSCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-CCCeEEECcccCcHHHhhcccCcCcceeEEEEC--CCCCEEEeCCcCcHHHHHHHHh
Confidence 3455688999999999999988 999999999997642 11112211 122 2477777862 3333332111
Q ss_pred hc-CCCceEEEeeeeecCCCCC--CCCcceeeeeeeecCC
Q 043787 125 VS-GFDKYYQIARCFRDEDLRA--DRQPEFTQLDMELAFT 161 (452)
Q Consensus 125 ~~-g~~rvfqi~~~FR~E~~~~--~r~~EFtqLe~e~~f~ 161 (452)
.. .--|.|+||+|||.|..+. .|.-||+|+++|..+.
T Consensus 153 ~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 153 NKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp TTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred CCCCCceeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 10 1358999999999997643 5668999999999874
No 58
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.73 E-value=3.6e-05 Score=81.68 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHH-HHhhcCCeEEEcCceEeecCC---CCC-----ccce-ee--c-cc------------------
Q 043787 56 NHNILLRHKVVKLIRR-YLEDVHGFVEIETPVLSRSTP---EGA-----RDYL-VP--S-RV------------------ 104 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~-ff~~~~gF~EV~TPiL~~~~~---eGa-----~~~~-v~--~-~~------------------ 104 (452)
-.-.+++.+|.+.+++ ++.. .||.||.||+|.+... .|- .+.+ +. . +.
T Consensus 228 P~G~~L~~~L~~~~~~e~~~~-~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~ 306 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELLEP-LGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVP 306 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH-HTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCC
T ss_pred chHHHHHHHHHHHHHHHHHHH-cCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccc
Confidence 3456788999999996 5766 9999999999987641 111 1222 21 0 10
Q ss_pred -------CCCceeeecC-CHH----HHHHHHhhc-C-CCceEE-EeeeeecCCCC----CCCCcceeeeeeeecCCCHHH
Q 043787 105 -------QPGTFYALPQ-SPQ----LFKQMLMVS-G-FDKYYQ-IARCFRDEDLR----ADRQPEFTQLDMELAFTPLDD 165 (452)
Q Consensus 105 -------~~g~~~~L~q-SpQ----l~kq~Lm~~-g-~~rvfq-i~~~FR~E~~~----~~r~~EFtqLe~e~~f~~~~d 165 (452)
..+..++|.- +-+ +|+..+... . --|+|| +++|||+| .+ --|..||+|.|++. |.+.++
T Consensus 307 ~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~ 384 (522)
T 2cja_A 307 TKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEE 384 (522)
T ss_dssp HHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHH
T ss_pred ccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHH
Confidence 0244567742 211 122111111 1 238999 99999999 44 25889999999997 778888
Q ss_pred HHHHHHHHH
Q 043787 166 MLRLNEDLI 174 (452)
Q Consensus 166 lm~~~E~li 174 (452)
..+..++++
T Consensus 385 s~ee~ee~i 393 (522)
T 2cja_A 385 VLKCAEELH 393 (522)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888888
No 59
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.69 E-value=0.00011 Score=71.81 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=60.9
Q ss_pred HHHHH--HHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeec--CCHHHHHHHHhh-c-CCCceEEEeeeee
Q 043787 66 VKLIR--RYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALP--QSPQLFKQMLMV-S-GFDKYYQIARCFR 139 (452)
Q Consensus 66 ~~~iR--~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~-~-g~~rvfqi~~~FR 139 (452)
.+.+| +.|.. .||.||.||++...+.=.. +.+. . ..|+.+.|+ -.|+.....+-. . ..-|+|++|+|||
T Consensus 7 e~~~r~~~~~~~-~Gy~eI~tP~le~~~l~~~-d~f~-d--~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR 81 (275)
T 1usy_A 7 EKVFSFYSKATK-KGFSPFFVPALEKAEEPAG-NFFL-D--RKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYR 81 (275)
T ss_dssp HHHHHHHHHHHH-TTCEECCCCSEEECSSCCS-SCEE-E--TTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEE
T ss_pred HHHHHHHHHHHH-CCCEEecCccccchhhhcc-cccC-C--CCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEe
Confidence 34444 88888 9999999999987653222 2222 2 257778885 224444333211 1 2369999999999
Q ss_pred cCCCCCCCCcceeeeeeeecCCC
Q 043787 140 DEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 140 ~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
.|.++. -||||+++|....+
T Consensus 82 ~e~~~~---Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 82 YSGSDL---VAEYQLGLEKVPRN 101 (275)
T ss_dssp EETTEE---EEEEEEEEEEESCC
T ss_pred cCCCCC---CeeeEeCEEEecCC
Confidence 998777 79999999998863
No 60
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=97.46 E-value=0.00028 Score=70.86 Aligned_cols=119 Identities=16% Similarity=0.133 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc-------c-ceeeccc----------------------CC
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR-------D-YLVPSRV----------------------QP 106 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~-------~-~~v~~~~----------------------~~ 106 (452)
.-+++..+.+.+|+ ..+ .||.||.||.|.+..- ++.+ . |.+.+.. ..
T Consensus 63 ~a~L~~aLe~~~~~-~~~-~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~ 140 (346)
T 3mf2_A 63 YESIVERLAALITS-HRE-AGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLS 140 (346)
T ss_dssp HHHHHHHHHHHHHH-TCC-TTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEE
T ss_pred HHHHHHHHHHHHHh-hHh-cCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccC
Confidence 45778888899999 766 9999999999987642 2221 1 2221110 01
Q ss_pred Cceeeec-CC----HHHHHHH-HhhcCCCceEEEeeeeecCCC-CCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHH
Q 043787 107 GTFYALP-QS----PQLFKQM-LMVSGFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 107 g~~~~L~-qS----pQl~kq~-Lm~~g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~ 179 (452)
+..|||. ++ -++|.+- .+...--|+-.+++|||.|.+ +--|..+|+|.|+- .|++.+++.+..|+|+..+..
T Consensus 141 ~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v-~~~tpEqs~~e~e~l~~~ae~ 219 (346)
T 3mf2_A 141 PADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYV-CIGTPDDVSDFRERWMVRAQA 219 (346)
T ss_dssp EEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEE-EEESHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEE-EEeCHHHHHHHHHHHHHHHHH
Confidence 2356773 32 2556532 122333577779999999987 45688999999874 456899999999999876543
No 61
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.36 E-value=0.00014 Score=77.99 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=51.1
Q ss_pred eec--CCHHHHHHHHhh----cCCCceEEEeeeeecCCC-CCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 111 ALP--QSPQLFKQMLMV----SGFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~--qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
.|+ .+|.+..++-.. ..--|+|++|+|||.+.. +..|.+||+||+.-+++ +++.|+...+|.+++.+
T Consensus 201 VLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355 458776665332 123589999999998664 55566999999999988 48999999999999765
No 62
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.34 E-value=0.00015 Score=77.91 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=51.1
Q ss_pred eec--CCHHHHHHHHhh----cCCCceEEEeeeeecCCC-CCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 111 ALP--QSPQLFKQMLMV----SGFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~--qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
.|+ .+|.+..++-.. ..--|+|++|+|||.+.. +..|.+||+||+.-+++ +++.|+...+|.+++.+
T Consensus 201 VLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355 458776665332 123589999999998664 55566999999999988 48999999999999765
No 63
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.33 E-value=0.00016 Score=77.83 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=51.1
Q ss_pred eec--CCHHHHHHHHhh----cCCCceEEEeeeeecCCC-CCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 111 ALP--QSPQLFKQMLMV----SGFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~--qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
.|+ .+|.+..++-.. ..--|+|++|+|||.+.. +..|.+||.||+.-+++ +++.|+...+|.+++.+
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355 458766665332 123589999999998664 55566999999999988 48999999999999765
No 64
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.30 E-value=0.00018 Score=77.70 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=51.1
Q ss_pred eec--CCHHHHHHHHhh----cCCCceEEEeeeeecCCC-CCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 111 ALP--QSPQLFKQMLMV----SGFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~--qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
.|+ .+|.+..++-.. ..--|+|++|+|||.+.. +..|.+||+||+.-+++ +++.|+...+|.+++.+
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355 458776665332 123589999999998664 55566999999999988 48999999999999765
No 65
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=97.28 E-value=0.00037 Score=72.08 Aligned_cols=94 Identities=14% Similarity=0.229 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcC--------CeEEEcC-ceEeecCC-CCCc--cceeecccCCCce-----eee--cCCHHHHHHHH
Q 043787 63 HKVVKLIRRYLEDVH--------GFVEIET-PVLSRSTP-EGAR--DYLVPSRVQPGTF-----YAL--PQSPQLFKQML 123 (452)
Q Consensus 63 s~i~~~iR~ff~~~~--------gF~EV~T-PiL~~~~~-eGa~--~~~v~~~~~~g~~-----~~L--~qSpQl~kq~L 123 (452)
+.+...||++|.. . ||.|+.+ |.+.+..- =.+- +--+|.|.....+ ..| ++||.+..-
T Consensus 51 ~~~~~~i~~~f~~-~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~-- 127 (415)
T 3cmq_A 51 WLIKERVKEHFYK-QYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDL-- 127 (415)
T ss_dssp HHHHHHHHHHHHH-HHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHH--
T ss_pred HHHHHHHHHHHHh-hhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHH--
Confidence 4455566666655 5 8999999 66664321 0110 1112333211222 235 356766553
Q ss_pred hhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeec
Q 043787 124 MVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA 159 (452)
Q Consensus 124 m~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~ 159 (452)
|..+..|+|++|+|||.+..++.|.|+|.|+|--..
T Consensus 128 l~~~~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~l 163 (415)
T 3cmq_A 128 LHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRL 163 (415)
T ss_dssp HHTTCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEE
T ss_pred HHHCCCCEEEeeeEEeccchhhhhhHHhcCCCcEEE
Confidence 456677999999999999999999999999996544
No 66
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.26 E-value=0.00018 Score=76.37 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=50.6
Q ss_pred eec--CCHHHHHHHHhh-c---CCCceEEEeeeeecCCC-CCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHHH
Q 043787 111 ALP--QSPQLFKQMLMV-S---GFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~--qSpQl~kq~Lm~-~---g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~i 177 (452)
.|+ .+|.+..++-.. . .--|+|++|+|||.+.. ++.|.+||+||+.-+++. ++.++...+|.+++.+
T Consensus 194 vLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 194 TLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp ECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred ccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 354 458777766322 1 23489999999998764 555669999999999884 8999999999988754
No 67
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.18 E-value=0.0009 Score=70.99 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=50.6
Q ss_pred eecCC--HHHHHHHHhh--cC--CCceEEEeeeeecCCC-CCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 111 ALPQS--PQLFKQMLMV--SG--FDKYYQIARCFRDEDL-RADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~qS--pQl~kq~Lm~--~g--~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
.|++| |.+..++-.. .+ --|+|++|+|||.|.. +..|.+||+|++..+++ +++.+++..+|.++..+
T Consensus 182 vLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 182 TLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred ccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 47665 7766665322 12 2489999999998765 55566999999999998 48999999999888654
No 68
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=97.11 E-value=0.0016 Score=71.56 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeec
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRS 90 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~ 90 (452)
-.-.+++..|.+.+|+.|....||.||.||+|++.
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 34578999999999999973269999999999874
No 69
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.70 E-value=0.0045 Score=64.61 Aligned_cols=111 Identities=13% Similarity=-0.005 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhh-cCCeEEEcCceEeecCCCCCccceeecccCCCceeeecC-CHHHHHHH----HhhcC---C
Q 043787 58 NILLRHKVVKLIRRYLED-VHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQ-SPQLFKQM----LMVSG---F 128 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~-~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~q-SpQl~kq~----Lm~~g---~ 128 (452)
=..+|+.|.+..|+-+.. +.++.||.||+...-...|--+.+ .+||.. +-|-+... +-... -
T Consensus 103 G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~---------~~~LRPeTaqg~~~nfk~~~~s~r~~LP 173 (459)
T 3ikl_A 103 GVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAF---------RGGLRENLLHGALEHYVNCLDLVNKRLP 173 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCC---------TTB-CSCSHHHHHHHTTTTTGGGTTBSS
T ss_pred HHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhh---------cceECCCCChhHHHHHhhhhhhccccCC
Confidence 367889999855555543 245888999994432222222211 145643 33333322 11111 2
Q ss_pred CceEEEeeeeecCC--CCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDED--LRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 129 ~rvfqi~~~FR~E~--~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
-|+.|||+|||+|. +.+ -|-.||||.|++ .|++.++..+..+.++..+.
T Consensus 174 ~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~-~F~~Pe~~~e~~~~~~~~~~ 228 (459)
T 3ikl_A 174 YGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV-WFTPPRTSNQWLDFWLRHRL 228 (459)
T ss_dssp EEEEEEEEEECCC----------CCCCEEEEEEEE-EEECGGGHHHHHHHHHHHHH
T ss_pred eEEEEEeeeeecccccccCCCCcccccceeeeeEE-EEeChhHHHHHHHHHHHHHH
Confidence 37999999999995 233 356799999998 57788887777777766553
No 70
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=96.56 E-value=0.0085 Score=62.54 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHH-H-hhcCCeEEEcCceEeecCC-CC--C-c----cceeec----c-----------cCCCceeee
Q 043787 58 NILLRHKVVKLIRRY-L-EDVHGFVEIETPVLSRSTP-EG--A-R----DYLVPS----R-----------VQPGTFYAL 112 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~f-f-~~~~gF~EV~TPiL~~~~~-eG--a-~----~~~v~~----~-----------~~~g~~~~L 112 (452)
=.+++..|.+.+++- + .. .|+.||.||+|.+..- ++ . + +.+... . ...+..+||
T Consensus 61 G~~l~~~i~~~~~~~~~~~~-~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~L 139 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFR-EQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKL 139 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-TTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEE
T ss_pred HHHHHHHHHHHHHHHHhhhc-CCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceee
Confidence 368889999988877 4 35 9999999999987651 11 1 1 111000 0 000223567
Q ss_pred c--CCHHH---HHHHHhhcC---CCceEEEeeeee---cCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 113 P--QSPQL---FKQMLMVSG---FDKYYQIARCFR---DEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 113 ~--qSpQl---~kq~Lm~~g---~~rvfqi~~~FR---~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
. ++|.. |+..+-... --+++|||+||| ||-+.. -|--||||.|++ .|++.++..+..+.++....
T Consensus 140 RPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~-~F~~pe~~~e~~~~~~~~~~ 218 (454)
T 1g5h_A 140 RATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLV-WFTPTRTSSQWLDFWLRHRL 218 (454)
T ss_dssp CSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEE-EEECHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheE-EEeCHhhHHHHHHHHHHHHH
Confidence 5 33322 233322222 258999999999 696432 355799999998 47888888877777766544
Q ss_pred H
Q 043787 179 L 179 (452)
Q Consensus 179 ~ 179 (452)
.
T Consensus 219 ~ 219 (454)
T 1g5h_A 219 L 219 (454)
T ss_dssp H
T ss_pred H
Confidence 3
No 71
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=96.32 E-value=0.034 Score=61.89 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCCCC-----Cc-cceeecccCCCceeeecCC--HHHHHHHHhh--cC--CC
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEG-----AR-DYLVPSRVQPGTFYALPQS--PQLFKQMLMV--SG--FD 129 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eG-----a~-~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g--~~ 129 (452)
..++.+.+|+.|.. .||.|+.|..+++..--. .. .+.+.... ....-.|++| |.+..-+.-. .+ --
T Consensus 495 ~~~~~~~ir~~L~~-~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPi-s~e~svLRtsLlpgLL~~l~~N~~r~~~~v 572 (795)
T 2rhq_B 495 RQHKTRTLKETLEG-AGLNQAITYSLVSKDHAKDFALQERPTISLLMPM-SEAHATLRQSLLPHLIEATAYNVARKNKDV 572 (795)
T ss_dssp HHHHHHHHHHHHHH-TTCEECCCCSEECTTTTTTTCSSCCCCEECSSCS-CTTSSEECSCSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHH-CCCEEEecCCccCHHHHHhhCCCCCceEEEcCCC-chhhhhhhhccHHHHHHHHHHHhcCCCCCe
Confidence 45677889999998 999999999998764211 11 11111111 1122247666 7766544321 22 34
Q ss_pred ceEEEeeeeecCCCCCCCCcceeeeeeeecC-------------CCHHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRADRQPEFTQLDMELAF-------------TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f-------------~~~~dlm~~~E~li~~i 177 (452)
|+|++|+|||.+.....+ +|++||..-+++ +|+.++...+|.++..+
T Consensus 573 rlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 573 RLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 899999999964432233 899999987766 68999999999998765
No 72
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.17 E-value=0.028 Score=60.49 Aligned_cols=112 Identities=15% Similarity=0.166 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecC--------CCCCc-cceeecccCCCceeeecCC--HHHHHHHHhh--cC-C
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRST--------PEGAR-DYLVPSRVQPGTFYALPQS--PQLFKQMLMV--SG-F 128 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~--------~eGa~-~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g-~ 128 (452)
+++.+.+|+.|.. .||.||.|+.+++.. +.+.. .+.+.... ....-.|++| |.|-.-+.-. .+ -
T Consensus 394 ~~~~~~ir~~l~~-~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPi-s~e~svmRtsLlpgLL~~l~~N~~~~~~ 471 (589)
T 3l4g_B 394 NKLTELLRHDMAA-AGFTEALTFALCSQEDIADKLGVDISATKAVHISNPK-TAEFQVARTTLLPGLLKTIAANRKMPLP 471 (589)
T ss_dssp HHHHHHHHHHHHH-TTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCS-SGGGSEECSCSHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHHHH-CCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCC-chhHhHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4567889999998 999999999998753 11111 11111110 1122247776 6665543211 11 2
Q ss_pred CceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRK 176 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~ 176 (452)
-|+|++|+|||.+.....+.+|+.||..-+++. ++.++...+|.++..
T Consensus 472 vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 472 LKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp EEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred eEEEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 489999999998765444447999999877763 688888888876653
No 73
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=95.55 E-value=0.15 Score=47.52 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCCCCC------ccce-eecccCCCceeeecCC--HHHHHHHHh--hcCCC--
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA------RDYL-VPSRVQPGTFYALPQS--PQLFKQMLM--VSGFD-- 129 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa------~~~~-v~~~~~~g~~~~L~qS--pQl~kq~Lm--~~g~~-- 129 (452)
.++.+.+|+.|.. .||.||-|-.+++...-.. .+.. +.... ....-.|++| |.+-.-+-- ..+..
T Consensus 7 ~~~~~~ir~~L~~-~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPl-s~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 7 YKWQTVVSEQLVG-AGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPL-SQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHH-TTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBS-CSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHH-CCCceeeeccCCCHHHHhhhcccCcCCeEEecCCc-cHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 4677889999998 9999999999987542111 1111 11111 1233358887 666554321 23443
Q ss_pred ceEEEeeeeecCCCCC-----CCC-cceeeeeeeecC-------------CCHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRA-----DRQ-PEFTQLDMELAF-------------TPLDDMLRLNEDLIRK 176 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~-----~r~-~EFtqLe~e~~f-------------~~~~dlm~~~E~li~~ 176 (452)
|+|+||+||+.++... ..+ .|..+|-.-+++ +|+.++...+|.++..
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~ 150 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCR 150 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHH
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHH
Confidence 8999999999765321 122 477888776655 4788999888888754
No 74
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.14 E-value=0.1 Score=48.68 Aligned_cols=112 Identities=14% Similarity=0.227 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCCCCC------ccce-eecccCCCceeeecCC--HHHHHHHHh--hcCC--C
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA------RDYL-VPSRVQPGTFYALPQS--PQLFKQMLM--VSGF--D 129 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa------~~~~-v~~~~~~g~~~~L~qS--pQl~kq~Lm--~~g~--~ 129 (452)
.++.+.+|+.|.. .||.||-|-.+++...-.. .+.. +.... ....-.|++| |.+-.-+.- ..+. -
T Consensus 7 ~~~~~~ir~~l~~-~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPl-s~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 7 NKLQNLVAEQLVG-CGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPL-SADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHH-TTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGG-GCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHH-CCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCc-chhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 4677889999998 9999999999987542111 1111 11111 1122257777 666554321 1233 3
Q ss_pred ceEEEeeeeecCCCCC-----CCC-cceeeeeeeecC-------------CCHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRA-----DRQ-PEFTQLDMELAF-------------TPLDDMLRLNEDLIRK 176 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~-----~r~-~EFtqLe~e~~f-------------~~~~dlm~~~E~li~~ 176 (452)
|+|+||+||+.+.... ..+ .|..+|-.-+++ +|+.++...+|.++..
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~ 150 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKR 150 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHH
Confidence 8999999999865331 112 477888876666 3677888888777753
No 75
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=94.56 E-value=0.26 Score=54.77 Aligned_cols=107 Identities=20% Similarity=0.147 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEcCceEeecC-----CCCCccceeecccCCCceeeecCC--HHHHHHHHhh--cC---C
Q 043787 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRST-----PEGARDYLVPSRVQPGTFYALPQS--PQLFKQMLMV--SG---F 128 (452)
Q Consensus 61 ~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-----~eGa~~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g---~ 128 (452)
-..++.+.+|+.|.. .||.|+-|-.+++.. +.+...+.+.... ....-.|++| |.+-.-+.-. .+ -
T Consensus 490 ~~~~~~~~ir~~L~~-~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPi-s~d~svLRtsLlpgLL~~l~~N~~r~~~~~ 567 (785)
T 1b7y_B 490 APYRKEQRLREVLSG-LGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPL-APEKAALRTHLFPGLVRVLKENLDLDRPER 567 (785)
T ss_dssp HHHHHHHHHHHHHHH-HTCEECCCCSEECTTHHHHTTCCCCSCEESSCS-STTSSEECSCSHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHH-CCCEEEecCcccCHHHHHhcCCCCCeEEEcCCC-chhhhhhhhhhHHHHHHHHHHHhhcCCCCC
Confidence 356678889999998 999999998888653 1111122221111 1122247666 7666544321 13 3
Q ss_pred CceEEEeeeeecCCCCCCCCcceeeeeeeecC------------CCHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQPEFTQLDMELAF------------TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f------------~~~~dlm~~~E~li~~i 177 (452)
-|+|++|+||| + +|++||..-+++ +|+.++...+|.++..+
T Consensus 568 vrlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 568 ALLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 58999999999 2 899999987776 57999999999998765
No 76
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=83.04 E-value=0.45 Score=46.43 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=26.0
Q ss_pred hhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHH
Q 043787 390 RALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPE 428 (452)
Q Consensus 390 ~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~ 428 (452)
.+.++|+++||.|||||++|.|..+ +..|+++.
T Consensus 217 ~~~~~~l~~~~~eig~~Gv~p~vl~------~~~gi~~~ 249 (288)
T 3dsq_A 217 YGDTVDVMKGDLELASGAMGPHFLD------EKWEIFDP 249 (288)
T ss_dssp SCCCEEEEETTEEEEEEEEESCTTT------TTTTCCSC
T ss_pred EEEEEEEEeCCEEEEEEEecHHHHH------HhcCCCCC
Confidence 3678999999999999998888763 25676654
No 77
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=75.05 E-value=14 Score=40.92 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhcCCeEEEcCceEeecCC-----CCCccceeecccCCCceeeecCC--HHHHHHHHh--hcCC--CceEE
Q 043787 65 VVKLIRRYLEDVHGFVEIETPVLSRSTP-----EGARDYLVPSRVQPGTFYALPQS--PQLFKQMLM--VSGF--DKYYQ 133 (452)
Q Consensus 65 i~~~iR~ff~~~~gF~EV~TPiL~~~~~-----eGa~~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm--~~g~--~rvfq 133 (452)
..+.+|+.|.. .||.||-|-.+++..- .+.....+.... ....-.|++| |.|-.-+-- ..+. -|.|+
T Consensus 494 ~~~~~r~~l~~-~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPi-s~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFE 571 (795)
T 3pco_B 494 SLKRVKTLLND-KGYQEVITYSFVDPKVQQMIHPGVEALLLPSPI-SVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFE 571 (795)
T ss_dssp CHHHHHHHHHH-TTCEECCCCSEECHHHHHHHSSSCCCCBCSSCS-CSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEE
T ss_pred HHHHHHHHHHH-CCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCC-chhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEE
Confidence 45678899988 9999999999986431 011111111111 1222258888 676554322 2233 48999
Q ss_pred EeeeeecCCCCCCCC-cceeeeeeeecC-------------CCHHHHHHHHHHHHHH
Q 043787 134 IARCFRDEDLRADRQ-PEFTQLDMELAF-------------TPLDDMLRLNEDLIRK 176 (452)
Q Consensus 134 i~~~FR~E~~~~~r~-~EFtqLe~e~~f-------------~~~~dlm~~~E~li~~ 176 (452)
||+||+.+.... .. .|-.+|-.-+++ +|+.++...+|.++..
T Consensus 572 iG~Vf~~~~~~~-~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~ 627 (795)
T 3pco_B 572 SGLRFVPDTQAP-LGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDL 627 (795)
T ss_dssp EEEEEEECTTSS-TTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTT
T ss_pred eeeEEecCCCcc-cCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHH
Confidence 999998754322 23 466777665544 4789999988888753
No 78
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=71.42 E-value=9.1 Score=41.28 Aligned_cols=115 Identities=14% Similarity=0.247 Sum_probs=80.3
Q ss_pred cccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCc-----chHHHHHcCCCCccEEEEecCCCcccc
Q 043787 214 QLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGD-----IYNEAIKSGAKGLPFLKVLDAGGVEGI 288 (452)
Q Consensus 214 ~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~-----~~~~~~~~~~~gl~~~~~~~~~~~~~~ 288 (452)
++.|++++|.++..++....++.|+.|.++..|+=.. +..+++.... +..+++.. .+|+.. .|. +.
T Consensus 285 ~~~dvt~~f~~t~s~vi~~~l~~Gg~v~~~~~~gf~g-~~g~e~q~trr~~te~~d~~k~~-~ggi~h----sde-lp-- 355 (633)
T 1zq1_C 285 EFYDVTDIFENTKSKIIARVIKKGGKVLAIKLPKFRG-LIGREIQPGRRLGTEFADRAKKY-VPGIFH----IDE-LP-- 355 (633)
T ss_dssp CCEECTTTTTTCSCHHHHHHHHTTCEEEECEETTCTT-TSSSEEETTEEHHHHHHHHHTTT-CSCCEE----GGG-CS--
T ss_pred cccchhhhhcccchHhhhhhhccCCeEEEEeccCccc-ccccccccccccchhHHHHHHHh-hcCccc----ccc-cc--
Confidence 4558899999998888888888899999988776321 1112222111 12345555 666532 121 21
Q ss_pred ccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHc
Q 043787 289 PALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHEL 340 (452)
Q Consensus 289 ~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l 340 (452)
+--+++++...|.+.+++.++|.++++|+....+..++.++.......+
T Consensus 356 ---~ygi~~~ev~~lr~~~~~~~~da~~~v~~~~~~~~~a~~~v~~R~~~a~ 404 (633)
T 1zq1_C 356 ---NYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAI 404 (633)
T ss_dssp ---BTTBCHHHHHHHHHHTTCCSSCEEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccCccHHHHHHHHHhhccCcccceEEeccchhhhhhhhhHHHHHHHHhh
Confidence 1236789999999999999999999999999999999998877666543
No 79
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=58.34 E-value=1.8 Score=43.49 Aligned_cols=93 Identities=23% Similarity=0.416 Sum_probs=52.8
Q ss_pred EcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeee
Q 043787 318 AVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMV 397 (452)
Q Consensus 318 ~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLV 397 (452)
.+|+.-......|.|...+...+|.- . .-+|.++.||||.| +.+.|+.
T Consensus 223 ~~g~~v~f~dLKg~le~ll~~lfG~~----~----------------~~r~rps~fPft~P------------s~e~~i~ 270 (350)
T 1b7y_A 223 VVGEGIAMAHLKGAIYELAQALFGPD----S----------------KVRFQPVYFPFVEP------------GAQFAVW 270 (350)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHSCSS----C----------------CEEEEECCBTTEEE------------EEEEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHhhcCCC----c----------------eEEEecCCCCCCCC------------ccEEEEE
Confidence 33443445677777776555544621 0 12345567899987 4567887
Q ss_pred e--cC--eEeeccccccccHHHHHHHH---HHcCCCH--HHHh-hhhhhhhh---hhhcC
Q 043787 398 Y--NG--VEIGGGSLRIYKREVQQKVL---EIVGISP--EQFI-FAEVVAIP---ALSSG 444 (452)
Q Consensus 398 l--NG--~EiGGGSiRIh~~elQ~~if---~~lg~~~--~~~~-~~f~~~l~---a~~~G 444 (452)
+ +| .||||-.+ || |++++... +..|+++ +++. +.|++-|+ .++||
T Consensus 271 ~~~~g~w~eIg~~G~-Vh-P~Vl~~~~~~~~~~gid~~~~~~~~~afglglerl~ml~~g 328 (350)
T 1b7y_A 271 WPEGGKWLELGGAGM-VH-PKVFQAVDAYRERLGLPPAYRGVTGFAFGLGVERLAMLRYG 328 (350)
T ss_dssp ETTTTEEEEEEEEEE-EC-HHHHHHHHHHHHHTTCCCCCTTCEEEEEEEEHHHHHHHHTT
T ss_pred EEeCCCeEEEEEEEE-Ee-HHHHHhhccccccCCCCCccccceEEEEEEeHHHHHHHHcC
Confidence 7 88 68877443 44 55554431 2338876 4432 45554344 45666
No 80
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=39.46 E-value=9.2 Score=37.90 Aligned_cols=60 Identities=35% Similarity=0.557 Sum_probs=38.6
Q ss_pred cccccccCcCCCCCCCccChhhhhhceeeeee-cC--eEeeccccccccHHHHHHHHHHcCCCHHHHh-hhhhhhhh---
Q 043787 367 RLEALHHPFTAPNPEDMDDLSSARALAYDMVY-NG--VEIGGGSLRIYKREVQQKVLEIVGISPEQFI-FAEVVAIP--- 439 (452)
Q Consensus 367 r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVl-NG--~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~-~~f~~~l~--- 439 (452)
||.++.+|||.| |..-|+.+ +| .||||-.+ || | .|++..|++++.+. |.||+=|+
T Consensus 242 r~rps~fPfteP------------s~eadI~~~~G~w~EIgg~G~-VH-P----~Vl~~~gid~~~~~g~AFglgleRla 303 (327)
T 3pco_A 242 RFRPSYFPFTEP------------SAEVDVMGKNGKWLEVLGCGM-VH-P----NVLRNVGIDPEVYSGFAFGMGMERLT 303 (327)
T ss_dssp EEEEECCTTEEE------------EEEEEEECSSSCEEEEEEEEE-EC-H----HHHHTTTCCTTTCEEEEEEEEHHHHH
T ss_pred EEecCcCCCCCC------------cEEEEEEEeCCCeEEEEEEEE-EC-H----HHHHHcCCCCccceEEEEEechHHHH
Confidence 455668899988 56778887 78 48887432 33 3 46677899987432 44554333
Q ss_pred hhhcC
Q 043787 440 ALSSG 444 (452)
Q Consensus 440 a~~~G 444 (452)
.++||
T Consensus 304 ml~~~ 308 (327)
T 3pco_A 304 MLRYG 308 (327)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 46666
No 81
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=30.74 E-value=17 Score=31.32 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.2
Q ss_pred hhhhhceeeeeecCeEeeccc
Q 043787 387 SSARALAYDMVYNGVEIGGGS 407 (452)
Q Consensus 387 ~~v~a~~YDLVlNG~EiGGGS 407 (452)
..+.+-+||+-+||+++|.|.
T Consensus 34 l~i~gl~y~v~lng~~la~G~ 54 (136)
T 3but_A 34 IVVSGYHYTIEMNGVKVADGY 54 (136)
T ss_dssp EEEEEEEEEEEETTEEEEEEE
T ss_pred eeeeceEEEEEECCEEEEeee
Confidence 446788999999999999985
No 82
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=29.90 E-value=72 Score=29.22 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=35.0
Q ss_pred hHHHHHcCCCCccEEEEecCCCcccccccc---ccCChhhHHHHHHHhCCCCCcEEEEEcCCch
Q 043787 263 YNEAIKSGAKGLPFLKVLDAGGVEGIPALV---SSLGPSNKEQLLIRCSAGPSDLILFAVGHPA 323 (452)
Q Consensus 263 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~---k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~ 323 (452)
-.++.++||+|...+.+.+ |.+. ..+.. +.+.++...++ .+++.||+|+++.+...
T Consensus 114 RD~~Ir~Ga~gali~~~~~-g~~~-~P~~~~~l~~~~~ela~~l---~~~~~gd~iIi~~~~~~ 172 (200)
T 2p8t_A 114 RDEAIKFDAKGAMILTVKD-NEIV-FPEDFRPLKEMYPEVAKKI---VDYEDGDAVIITWAETP 172 (200)
T ss_dssp HHHHHHTTCSEEEEEEEET-TEEE-CTTTCCBGGGTCHHHHHHC---CSCCTTCEEEEEECSSH
T ss_pred hHHHHHcCCceEEEEEEEC-CEEE-cCCCCCcHHHHhHHHHHHh---cCCCCCCEEEEEeCCCh
Confidence 3578899999987777654 4331 12222 22333333333 68999999999887754
No 83
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=29.16 E-value=47 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=20.9
Q ss_pred cccHHHHHHHH--HHcCCCHHHHhhhhhhhhhhhhcC
Q 043787 410 IYKREVQQKVL--EIVGISPEQFIFAEVVAIPALSSG 444 (452)
Q Consensus 410 Ih~~elQ~~if--~~lg~~~~~~~~~f~~~l~a~~~G 444 (452)
..|.+-..-|. +.+|++.+|+.. ||...+.|
T Consensus 10 ~~d~ewl~LI~~Ak~lGlsleEIre----fL~l~~~~ 42 (57)
T 1b0n_B 10 ELDQEWVELMVEAKEANISPEEIRK----YLLLNKKS 42 (57)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHH----HHHHC---
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHH----HHHHhccC
Confidence 34444444454 789999999998 88888888
No 84
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=27.07 E-value=1.1e+02 Score=30.66 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeecCeEee
Q 043787 325 VNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIG 404 (452)
Q Consensus 325 ~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiG 404 (452)
...-+-.+|..+|.++|++=| .+-|.|=+ . .....|=+.++|+|+|
T Consensus 74 L~~rI~~iRr~la~elG~vlP----~IrIrDn~------------------------~------L~p~~Y~I~i~gv~va 119 (383)
T 4a5p_A 74 MEGLIERIRSQFFIDYGVRLP----TILYRTSN------------------------E------LXVDDIVLLINEVRAD 119 (383)
T ss_dssp HHHHHHHHHHHHHHHTCCCCC----CCEEEEES------------------------S------SCSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCC----ceEEEECc------------------------c------cCCcceEEEEcccccc
Confidence 445567789999999996521 12222111 1 1357999999999999
Q ss_pred cccccccc
Q 043787 405 GGSLRIYK 412 (452)
Q Consensus 405 GGSiRIh~ 412 (452)
.|.++...
T Consensus 120 ~gel~~d~ 127 (383)
T 4a5p_A 120 SFNIYFDX 127 (383)
T ss_dssp EEECCTTE
T ss_pred ccccccCe
Confidence 99998653
No 85
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=26.26 E-value=77 Score=34.02 Aligned_cols=112 Identities=13% Similarity=0.206 Sum_probs=75.9
Q ss_pred cccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccC-----cchHHHHHcCCCCccEEEEecCCCcccc
Q 043787 214 QLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKG-----DIYNEAIKSGAKGLPFLKVLDAGGVEGI 288 (452)
Q Consensus 214 ~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~-----~~~~~~~~~~~~gl~~~~~~~~~~~~~~ 288 (452)
++.|++++|+++.-++. ..+|.|.++..|+=..-+. +.+..+ ++..+++..|.+|+.. .|. +.+
T Consensus 276 ~i~dvt~~f~~t~s~vi----~~~g~v~a~~~~gf~g~~g-~~~q~~rr~~te~~d~~k~~~~~g~~h----tde-lp~- 344 (619)
T 2d6f_C 276 KIFDVSEVFADTESRII----SSAESVLAVKLRGFDGLIG-VEIQPGRRLGTEMADYAKKRGVSGIFH----TDE-LPA- 344 (619)
T ss_dssp EEECTTGGGTTCSCHHH----HTSSEEEEEEETTCTTTSS-SEEETTEEHHHHHHHHHHTTSCSCCEE----TTT-TTC-
T ss_pred ccchhhhhhccccchhh----hccceeEEeeccCcccccc-cccccCcccchhhhHHHHhhccCcccc----ccc-ccc-
Confidence 34578888888775443 3458888888876221111 111111 1234677788888752 222 322
Q ss_pred ccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHc
Q 043787 289 PALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHEL 340 (452)
Q Consensus 289 ~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l 340 (452)
--+++++...|.+.+|+.++|-++++|+....+..++..+.......+
T Consensus 345 ----ygi~~~ev~~l~~~~~~~~~da~~~v~~~~~~~~~a~~~v~~R~k~a~ 392 (619)
T 2d6f_C 345 ----YGITEEEVRGLRDAVGASQGDAVVMVAHERVTAENALREVIRRAEMAI 392 (619)
T ss_dssp ----SSCCHHHHHHHHHHTTCCSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCccHHHHHHHHHHhcCCcccceEEeccchhhhhhhhhhHHHHHHhhh
Confidence 236889999999999999999999999999999999998877665543
No 86
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=24.31 E-value=97 Score=25.88 Aligned_cols=50 Identities=14% Similarity=0.281 Sum_probs=32.2
Q ss_pred CcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCC
Q 043787 312 SDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAP 378 (452)
Q Consensus 312 gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P 378 (452)
||.=+.+.......+.+|-+.|..+.+.+.- ..---+||.-|| |||-|.-
T Consensus 15 G~~gL~a~e~~~it~~qiEaaR~ai~r~l~~---k~~~~~wirv~P--------------~~pvt~k 64 (118)
T 2ftc_I 15 GNFAILALGGGYLHWGHFEMMRLTINRSMDP---KNMFAIWRVPAP--------------FKPITRK 64 (118)
T ss_pred eeEEEEECcCCccCHHHHHHHHHHHHheeec---cCCeEEEEEECC--------------CcccCcC
Confidence 3333334444456677888889888887731 112349999999 8898843
No 87
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=22.59 E-value=51 Score=27.58 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCC
Q 043787 325 VNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPN 379 (452)
Q Consensus 325 ~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~ 379 (452)
-.+.||=+|.+.+.. | ..|-|+-|||=|-| -+|.|+--|.
T Consensus 13 Wvell~Wl~eyA~~~-g------~~FekeaDFPDyIY--------RMeRPydLPT 52 (129)
T 3i9v_7 13 WVELLSWMREYAQAK-G------VRFEKEADFPDFIY--------RMERPYDLPT 52 (129)
T ss_dssp HHHHHHHHHHHHHHT-T------CCEEEEEECHHHHS--------CCSSCCCCSC
T ss_pred HHHHHHHHHHHHHhc-C------CceeecccccHHHH--------hhcCcccCCc
Confidence 347889999877664 6 46999999998854 4678886663
No 88
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=21.53 E-value=92 Score=31.36 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.3
Q ss_pred hceeeeeecCeEeecccccccc
Q 043787 391 ALAYDMVYNGVEIGGGSLRIYK 412 (452)
Q Consensus 391 a~~YDLVlNG~EiGGGSiRIh~ 412 (452)
...|-+.++|+|+|.|.++...
T Consensus 101 p~~Y~I~i~gv~va~gel~~~~ 122 (382)
T 3mix_A 101 PNEYRLKIKGNEVAKGELLLDH 122 (382)
T ss_dssp TTEEEEEETTEEEEEEECCTTC
T ss_pred CCEEEEEEccEEEEEEEEcCCc
Confidence 5799999999999999998654
No 89
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=21.28 E-value=44 Score=24.43 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=23.2
Q ss_pred hhceeeeeecCeEeeccccccccHHHH---HHHHHHcCCCHHHHh
Q 043787 390 RALAYDMVYNGVEIGGGSLRIYKREVQ---QKVLEIVGISPEQFI 431 (452)
Q Consensus 390 ~a~~YDLVlNG~EiGGGSiRIh~~elQ---~~if~~lg~~~~~~~ 431 (452)
.+..|--.+||+||| |.|-|.- ++|.-.++++..+.+
T Consensus 25 esygyrafingveig-----ikdietvqgfqqiipsinisksdve 64 (72)
T 4f87_A 25 ESYGYRAFINGVEIG-----IKDIETVQGFQQIIPSINISKSDVE 64 (72)
T ss_dssp SCCCEEEEETTEEEE-----ECCHHHHHHHHTTSCEEECCGGGHH
T ss_pred cccchhheecceEec-----ceehHHhhhHHHhCccccccHhHHH
Confidence 367899999999998 3443322 233345566665544
Done!