RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043787
(452 letters)
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 635 bits (1640), Expect = 0.0
Identities = 202/440 (45%), Positives = 272/440 (61%), Gaps = 28/440 (6%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSK-LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNI 59
M TG IEV + ++N R+ LP D EE RL+YR LDLRR +M +
Sbjct: 87 MATGEIEVLASSLTIIN--RADVLPL-----DSNHV-NTEEARLKYRYLDLRRPEMAQRL 138
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLF 119
R K+ L+RR+++D HGF++IETP+L+++TPEGARDYLVPSRV G FYALPQSPQLF
Sbjct: 139 KTRAKITSLVRRFMDD-HGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLF 197
Query: 120 KQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179
KQ+LM+SGFD+YYQI +CFRDEDLRADRQPEFTQ+D+E +F + + E L+R ++L
Sbjct: 198 KQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWL 257
Query: 180 EIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDS-LKSGG 238
E+K V L FP +T+AEA RYGSD+PD R ++L DV+D+ F VF+ G
Sbjct: 258 EVKGVDLG-DFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKG 316
Query: 239 IIKVLCVPSGAKTYSNTALKKGDIYNEAIKS-GAKGLPFLKVLDAGGVEGIPALVSS--- 294
+ L VP GA + K+ D Y +K GAKGL ++KV + +G+ + S
Sbjct: 317 RVAALRVPGGAS-LTR---KQIDEYGNFVKIYGAKGLAYIKVNERA--KGLEGINSPVAK 370
Query: 295 -LGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWI 353
L E +L R +A D+I F + V + LR V +LGL D SK + LW+
Sbjct: 371 FLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWV 430
Query: 354 TDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS----ARALAYDMVYNGVEIGGGSLR 409
DFPMFE + E L A+HHPFT+P +L + A A AYDMV NG E+GGGS+R
Sbjct: 431 IDFPMFEDDG-EGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVR 489
Query: 410 IYKREVQQKVLEIVGISPEQ 429
I+ ++QQ V I+GI+ E+
Sbjct: 490 IHNGDMQQTVFGILGINEEE 509
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 627 bits (1620), Expect = 0.0
Identities = 200/440 (45%), Positives = 272/440 (61%), Gaps = 32/440 (7%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSK-LPFLVTTADDAKDF--VKEEIRLRYRCLDLRRQQMNH 57
+ TG +EV + ++VL +K PF V ++ EE+RL+YR LDLRR++M
Sbjct: 85 LATGRVEVELSALEVLA--EAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQE 142
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQ 117
N+ LRH+V+K I +L+ GFV++ETP L++STPEGARD+LVP R +PG FYALPQSPQ
Sbjct: 143 NLRLRHRVIKAIWDFLDR-EGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQ 201
Query: 118 LFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177
LFKQMLMV+G D+Y+QIARCFRDEDLRADRQP+FTQLD+E++F ++D+L LNE L+ +
Sbjct: 202 LFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHV 261
Query: 178 FLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSG 237
F E V+LP PFPRL+Y EAM RYGSD+PD RF L+L +V +F +S FRVF +
Sbjct: 262 FREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQE----A 317
Query: 238 GIIKVLCVPSGAKTYSNTALKKGDIYNEAIKS-GAKGLPFLKVLDAGGVEGIPALVSSLG 296
+K L +P S K+ E K A+GL + +V + G +
Sbjct: 318 ESVKALALPKA---LSR---KEVAELEEVAKRHKAQGLAWARVEEGG-------FSGGVA 364
Query: 297 ---PSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWI 353
+E LL A P D +LF G L +R A LGL LW+
Sbjct: 365 KFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-GFRFLWV 423
Query: 354 TDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS----ARALAYDMVYNGVEIGGGSLR 409
DFP+ EW++ E+ +HHPFT+P+PED+ L RALAYD+V NGVE+GGGS+R
Sbjct: 424 VDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIR 483
Query: 410 IYKREVQQKVLEIVGISPEQ 429
I+ +Q +V ++GI E+
Sbjct: 484 IHDPRLQARVFRLLGIGEEE 503
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 129 bits (326), Expect = 3e-33
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 30/212 (14%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKV 65
E+ E + VLN + LP T A+ + RL R +DLRR ++ +R V
Sbjct: 88 FEILPEKIVVLNRAETPLPLDPTGKVKAEL----DTRLDNRFMDLRRPEVMAIFKIRSSV 143
Query: 66 VKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQLFKQ 121
K +R + + +GF+EI TP + + EG + + P ++ L QSPQL+KQ
Sbjct: 144 FKAVRDFFHE-NGFIEIHTPKIIATATEGG------TELFPMKYFEEDAFLAQSPQLYKQ 196
Query: 122 MLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTP-LDDMLRLNEDLIRKIF- 178
++M SG D+ Y+IA FR E+ R E +D E+AF ++++ E L+
Sbjct: 197 IMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAIN 256
Query: 179 ---------LEIKDVQLPN---PFPRLTYAEA 198
L+I + +L PFPR++Y +A
Sbjct: 257 YVREHNAKELDILNFELEEPKLPFPRVSYDKA 288
Score = 42.6 bits (101), Expect = 2e-04
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 18/79 (22%)
Query: 353 ITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIY 411
+ +P E + PF ++ A+D+ Y GVEI G R +
Sbjct: 328 LYQYPS------EAK------PFYIMKYDNK-PEIC----RAFDLEYRGVEISSGGQREH 370
Query: 412 KREVQQKVLEIVGISPEQF 430
+ ++ + ++ G++PE F
Sbjct: 371 RHDILVEQIKEKGLNPESF 389
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 127 bits (321), Expect = 1e-32
Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 30/211 (14%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKV 65
IE+ E + +L+ ++ LP V+ A + RLR R LDLRRQ+M I ++
Sbjct: 85 IELHAEEITLLSKAKAPLPLDVSGKVKADI----DTRLRERVLDLRRQEMQAVIKIQSLA 140
Query: 66 VKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQLFKQ 121
+K R L GF+EI TP + S EG +++ P ++ L QSPQL+K+
Sbjct: 141 LKAFRETLYK-EGFIEIFTPKIIASATEGG------AQLFPVIYFGKEAFLAQSPQLYKE 193
Query: 122 MLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIF-- 178
+ M ++ +++A +R E+ EF +D+E+AF +D+++L E ++ I
Sbjct: 194 L-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKT 252
Query: 179 --------LEIKDVQLP---NPFPRLTYAEA 198
L+I + + P P RL Y EA
Sbjct: 253 IKEEGKEELKILNYEPPEVKIPIKRLKYTEA 283
Score = 44.1 bits (105), Expect = 6e-05
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 337 AHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYD 395
L + K + +I D+P + R PF T E+ + ++D
Sbjct: 303 PELRILNEELKEDLYFIVDWPS------DAR------PFYTKSKSEN-----PELSESFD 345
Query: 396 MVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQF 430
++Y +EI GS R +KREV ++ L+ G+ PE F
Sbjct: 346 LIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESF 380
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 127 bits (320), Expect = 3e-32
Identities = 64/226 (28%), Positives = 95/226 (42%), Gaps = 40/226 (17%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKE--------EIRLRYRCLDLRRQQMNH 57
+E+ + + ++ LP L+ A ++ + + RL YR +DLR
Sbjct: 117 LEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQA 176
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LP 113
++ V +L R YL F E+ TP L + EG S V T++ L
Sbjct: 177 IFRIQAGVCELFREYLAT-KKFTEVHTPKLLGAPSEGG------SSVFEVTYFKGKAYLA 229
Query: 114 QSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF-TPLDDMLRLNE 171
QSPQ KQ L+V+ F++ Y+I FR E+ R EFT LDME+AF ++L
Sbjct: 230 QSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLS 289
Query: 172 DLIRKIF----------LEIKDVQLP---------NPFPRLTYAEA 198
+L IF +E+ Q P RLTY E
Sbjct: 290 ELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEG 335
Score = 43.1 bits (102), Expect = 2e-04
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 353 ITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIY 411
+ FP+ E R PF T P+P + S +YD G EI G+ RI+
Sbjct: 375 LDKFPL------EIR------PFYTMPDPAN-PKYS----NSYDFFMRGEEILSGAQRIH 417
Query: 412 KREVQQKVLEIVGISPEQFIF 432
+ Q+ ++ G+SPE
Sbjct: 418 DHALLQERMKAHGLSPEDPGL 438
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 125 bits (317), Expect = 5e-32
Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 30/212 (14%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKV 65
+EV + V+VL+ P + + + L YR + LR ++ + ++ +
Sbjct: 75 LEVQAKEVEVLSPALEPTPVEIP---KEEWRANPDTLLEYRYVTLRGEKARAPLKVQAAL 131
Query: 66 VKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQLFKQ 121
V+ RRYL+ F EI TP + R+ EG S + ++ L QSPQL+KQ
Sbjct: 132 VRGFRRYLDR-QDFTEIFTPKVVRAGAEGG------SGLFGVDYFEKRAYLAQSPQLYKQ 184
Query: 122 MLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF-TPLDDMLRLNEDLIRKIF- 178
+ MV F++ Y++A +R E+ R E+ LD+E+ F +D++RL E L+ ++
Sbjct: 185 I-MVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLE 243
Query: 179 ---------LEIKDVQLP---NPFPRLTYAEA 198
+ + P PRLT+AEA
Sbjct: 244 EALNTAGDEIRLLGATWPSFPQDIPRLTHAEA 275
Score = 41.4 bits (98), Expect = 4e-04
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 353 ITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIY 411
+T +P R PF T P + ++D+++ G+EI G RI+
Sbjct: 314 VTRYPR------SVR------PFYTYPEEDGT-------TRSFDLLFRGLEITSGGQRIH 354
Query: 412 KREVQQKVLEIVGISPEQF 430
+ E + L+ G+ PE F
Sbjct: 355 RYEELLESLKAKGMDPEAF 373
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 115 bits (290), Expect = 5e-28
Identities = 58/189 (30%), Positives = 78/189 (41%), Gaps = 39/189 (20%)
Query: 37 VKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR 96
V ++ RL R LDLR ++ L R +L FVEI TP L + EG
Sbjct: 222 VSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTS-QKFVEIHTPKLIGCSSEGGS 280
Query: 97 -----DYLVPSRVQPGTF----YALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADR 147
Y F Y L QSPQL+KQM ++ F K +++ FR E+ R
Sbjct: 281 NIFEVKY----------FDRKAY-LAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRR 329
Query: 148 Q-PEFTQLDMELAF-TPLDDMLRLNEDLIRKIF----------LEIKDVQLPN------P 189
EF LD+E+ + + + E L IF L++ Q P P
Sbjct: 330 HLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRP 389
Query: 190 FPRLTYAEA 198
F RLTY EA
Sbjct: 390 FLRLTYKEA 398
Score = 44.0 bits (104), Expect = 7e-05
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 18/79 (22%)
Query: 353 ITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIY 411
+ FP R PF T P+ +D + S +YD+ G EI G+ RI+
Sbjct: 438 LDKFPA------AIR------PFYTMPDIDD-PNYS----NSYDVFVRGQEITSGAQRIH 480
Query: 412 KREVQQKVLEIVGISPEQF 430
E K G+ P
Sbjct: 481 DPEFLMKRCIEKGVDPATL 499
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 110 bits (277), Expect = 2e-27
Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 28/180 (15%)
Query: 46 RCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--------EGARD 97
+++ ++++ + ++ K+++ + + GF + ++S T EG
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVK-EGFKWLLPVIISPITDPLWPDPAGEGMEP 60
Query: 98 YLVPSRVQPGTFYA----LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ---PE 150
Y L S L KQ+ + G K + ++ R E + D E
Sbjct: 61 A-------EVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYE 113
Query: 151 FTQLDMELAFTPLDDMLRLNEDLIRKIFLEI-----KDVQLPNPFPRLTYAEAMSRYGSD 205
FTQLD E+ ++D++RL E L+ +F + ++ F Y+E + +GSD
Sbjct: 114 FTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSD 173
Score = 31.4 bits (72), Expect = 0.54
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 392 LAYDMV--YNGVEIGGGSLRIYKREVQQKVLEIVGISPEQF 430
YD++ Y E+ G R ++ E + G++ + F
Sbjct: 203 RNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSF 243
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 98.5 bits (246), Expect = 2e-22
Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 38/214 (17%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKE---EIRLRYRCLDLRRQQMNHNILLR 62
+E+ V +V+ L ++ K+ +++ R + +R + + LR
Sbjct: 109 LEMQVTEWKVIGESPIDLENIIN---------KDSSIPQKMQNRHIVIRSEHTQQVLQLR 159
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQL 118
++ R+Y D + F EI+ P + ++ EG S + ++ L QS QL
Sbjct: 160 SEIQWYFRKYYHD-NHFTEIQPPTIVKTQCEGG------STLFKLQYFNEPAYLTQSSQL 212
Query: 119 FKQMLMVSGFDKYYQIARCFRDEDLRADRQP-EFTQLDMELAFTPLDDMLRLNEDLIRKI 177
+ + +++ K + + +R E R R E+ L+ EL F +D+L EDL+ +
Sbjct: 213 YLES-VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTV 271
Query: 178 F----------LEI--KDVQLPN-PFPRLTYAEA 198
+ ++LP PF R+TYA+A
Sbjct: 272 IDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADA 305
Score = 31.4 bits (72), Expect = 0.58
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 374 PF-TAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQF 430
F + P D + D++ GV EI GGS+RI+ + + G++P+ +
Sbjct: 354 AFYMSKVPGHPD-----LTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPY 407
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 97.3 bits (243), Expect = 4e-22
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 45/219 (20%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKV 65
EV VE ++V+ AV S+ P + + L YR L +R + + + ++ +
Sbjct: 88 AEVHVEKLEVIQAV-SEFPIPENPEQASPEL-----LLDYRHLHIRTPKASAIMKVKETL 141
Query: 66 VKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGT-----FYA----LPQSP 116
+ R +L G+ E+ P+L EG T ++ L QS
Sbjct: 142 IMAAREWLLK-DGWHEVFPPILVTGAVEGG-----------ATLFKLKYFDKYAYLSQSA 189
Query: 117 QLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIR 175
QL+ + + G +K + + FR E R R EF L++E A+ L D++++ E+L+
Sbjct: 190 QLYLEAAI-FGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVS 248
Query: 176 KIF----------LEIKDVQLP------NPFPRLTYAEA 198
+ +E+ L PFPR++Y EA
Sbjct: 249 YMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEA 287
Score = 31.8 bits (73), Expect = 0.46
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 374 PF-TAPNPEDMDDLSSARALAYDMVY-NGV-EIGGGSLRIYKREVQQKVLEIVGISPEQF 430
F +P D + LA DM+ G EI GGS R + + G+ P+ +
Sbjct: 331 AFYMKEDPNDPR-----KVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDY 385
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 93.8 bits (234), Expect = 5e-21
Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 4 GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRH 63
E+ + +++ V + + D L R L +R + + LR
Sbjct: 82 NGHELIADFWKIIGNAPPGGIDNVLNEEASVDK-----MLDNRHLVIRGENAAALLRLRA 136
Query: 64 KVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQLF 119
+ +R + + G+VE+ P L ++ EG S + ++ L QS QL+
Sbjct: 137 AATRAMREHFYN-AGYVEVAPPTLVQTQVEGG------STLFNLDYFGEQSFLTQSSQLY 189
Query: 120 KQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKI- 177
+ + + IA+ +R E R R E+ ++ E F LDD++ E+L+
Sbjct: 190 LET-CIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTV 248
Query: 178 --------------FLEIKDVQLPNPFPRLTYAEA 198
+ K PF R+ Y +A
Sbjct: 249 DRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDA 283
Score = 31.4 bits (72), Expect = 0.57
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 378 PNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQF 430
+ +D + D++ GV EI GGS+RI+K + K + V I P+ +
Sbjct: 338 RDAQDNT-----LTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPY 386
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 91.4 bits (228), Expect = 5e-20
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 50/194 (25%)
Query: 40 EIRLRYRCLDLRRQQMNHNI----LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA 95
E R R R LDL MN + R +++ +RRYL+ HG++E+ETP++ + GA
Sbjct: 154 EQRYRQRYLDL---IMNPESKKTFITRSLIIQSMRRYLDS-HGYLEVETPMMH-AVAGGA 208
Query: 96 -------------RD-YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
Y+ R+ + +L + L+V G +K Y+I R FR+E
Sbjct: 209 AARPFITHHNALDMTLYM---RI----------AIELHLKRLIVGGLEKVYEIGRVFRNE 255
Query: 142 DLRADRQPEFTQLDMEL--AFTPLDDMLRLNEDLIRKIFLEI----------KDVQLPNP 189
+ PEFT +EL A+ D+++L E+LI I E+ V L
Sbjct: 256 GISTRHNPEFTM--LELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPE 313
Query: 190 FPRLTYAEAMSRYG 203
+ RL +A+ Y
Sbjct: 314 WRRLHMVDAIKEYV 327
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 91.0 bits (227), Expect = 6e-20
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 50/196 (25%)
Query: 40 EIRLRYRCLDLRRQQMNHNI----LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA 95
E+R R R LDL N ++R K++ IR+++ GF+E+ETP++ P GA
Sbjct: 163 EVRYRQRYLDL---IANDKSRQTFVVRSKILAAIRQFMVA-RGFMEVETPMMQ-VIPGGA 217
Query: 96 -------------RD-YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
D YL R+ +P+L+ + L+V GF++ ++I R FR+E
Sbjct: 218 SARPFITHHNALDLDMYL---RI----------APELYLKRLVVGGFERVFEINRNFRNE 264
Query: 142 DLRADRQPEFTQLDMEL--AFTPLDDMLRLNEDLIRKIFLEI----------KDVQLPNP 189
+ PEFT MEL A+ D++ L E L R + E+ P
Sbjct: 265 GISVRHNPEFTM--MELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKP 322
Query: 190 FPRLTYAEAMSRYGSD 205
F +LT EA+ +Y +
Sbjct: 323 FEKLTMREAIKKYRPE 338
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 89.5 bits (223), Expect = 6e-20
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 25/156 (16%)
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQ-PGTFYALPQ-- 114
N+L R ++ IRR+ D G +E+ETP +S++T +LVP + G ++
Sbjct: 35 NLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDI--HLVPFETRFVGPGHSQGMNL 91
Query: 115 ----SPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ--PEFTQLDMEL--AFTPLDDM 166
SP+ + L+V+G +Q+ R FR+E++ R PEFT +E + +
Sbjct: 92 WLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEM--GRYHNPEFTM--LEWYRPHYDMYRL 147
Query: 167 LRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY 202
+ +DL++++ L+ L+Y +A RY
Sbjct: 148 MNEVDDLLQQV-LDC------PAAESLSYQQAFLRY 176
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 90.7 bits (226), Expect = 1e-19
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 54/195 (27%)
Query: 40 EIRLRYRCLDLRRQQMNHNI----LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA 95
E R R R +DL + R K + IR+++ D F+E+ETP+L P GA
Sbjct: 184 ETRYRQRYVDL---IVTPETRTTFRARTKAIASIRKFMGD-ADFMEVETPMLH-PIPGGA 238
Query: 96 -------------RD-YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
+ +L R+ +P+L+ + L+V GF++ ++I R FR+E
Sbjct: 239 AAKPFVTHHNALDMEMFL---RI----------APELYLKRLIVGGFERVFEINRNFRNE 285
Query: 142 DLRADRQ--PEFTQLDMEL--AFTPLDDMLRLNEDLIRKIFLEI----------KDVQLP 187
+ + PEFT ME A+T ++ E LIR+ ++ +++ L
Sbjct: 286 GV--SPRHNPEFTM--MEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLA 341
Query: 188 NPFPRLTYAEAMSRY 202
PF RLT +A+ +Y
Sbjct: 342 QPFHRLTITQAIQKY 356
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 86.4 bits (215), Expect = 2e-18
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 61/203 (30%)
Query: 40 EIRLRYRCLDLRRQQMNHNI----LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA 95
E R R R LDL +N + ++R K++ IR +L++ GF+EIETP+++ P GA
Sbjct: 156 ETRYRQRYLDL---ILNDFVRQKFIIRSKIITYIRSFLDE-LGFLEIETPMMN-IIPGGA 210
Query: 96 R-----------D---YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
D Y+ R+ +P+L+ +ML+V G D+ Y+I R FR+E
Sbjct: 211 VAKPFITYHNELDMNLYM---RI----------APELYHKMLVVGGIDRVYEIGRQFRNE 257
Query: 142 DLRADRQ--PEFTQLDMEL--AFTPLDDMLRLNEDLIRKIFLEI---------------- 181
+ D PEFT E A+ D++ + E ++ + I
Sbjct: 258 GI--DLTHNPEFTT--CEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQ 313
Query: 182 -KDVQLPNPFPRLTYAEAMSRYG 203
DV PF R+ E + +
Sbjct: 314 AYDVDFTPPFRRINMVEELEKAL 336
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.4 bits (177), Expect = 1e-13
Identities = 81/504 (16%), Positives = 159/504 (31%), Gaps = 157/504 (31%)
Query: 4 GFIEVA--VEHVQVLNAVRSKLPFLVTTADDAKDFVKEE-----IRLRYRCLD-LRRQQM 55
G +E V A + + F + + F ++ L + L +
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 56 NHNILLRHKVVKLI-----RRYL--EDVHGFV-----EIETPVLSRSTPEGARDYLVPSR 103
+ +V+ L YL D+H E +T ++ E ++Y+ +R
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK--ELIKNYIT-AR 130
Query: 104 VQPGTFYALPQSPQLFKQMLMVSGFDKYY-----Q--IARCFRDEDLRA--DRQPEFTQL 154
+ + + LF+ + G + Q F +E LR
Sbjct: 131 IMAKRPFDKKSNSALFRAV--GEGNAQLVAIFGGQGNTDDYF-EE-LRDLYQTYHVLVGD 186
Query: 155 DMELAFTPLDDMLRLNEDLIRKIFLEIKDVQ--LPNPFPRLTYAEAMSRYGSDRPDTRF- 211
++ + L +++R D K+F + ++ L NP S+ PD +
Sbjct: 187 LIKFSAETLSELIRTTLD-AEKVFTQGLNILEWLENP--------------SNTPDKDYL 231
Query: 212 -----SLQLNDVSD-----IFLE----SPFRVFSD----SLKSGGIIKVLCVPSGAKT-- 251
S L V + + +P + S + S G++ + + + +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI-AETDSWE 290
Query: 252 --YSNTALKKGDIYNEAIK----SGAKG--------LPFLKVLDA--GGVEGIPA---LV 292
+ + +AI G + LP + D+ EG+P+ +
Sbjct: 291 SFFVSVR--------KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN-EGVPSPMLSI 341
Query: 293 SSLGPSNKEQLLIRCSA-----------------GPSDLILFAVGHPAS---VNKTLDRL 332
S+L +EQ+ + G +L++ G P S +N TL +
Sbjct: 342 SNL---TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV--SGPPQSLYGLNLTLRKA 396
Query: 333 RTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF---TAP--NPEDMDDLS 387
+ GL D S+ P +R + F +P + L
Sbjct: 397 KA----PSGL-DQSR--------IPF------SERKLKFSNRFLPVASPFHSHL----LV 433
Query: 388 SARA-LAYDMVYNGVEIGGGSLRI 410
A + D+V N V ++I
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQI 457
Score = 42.0 bits (98), Expect = 4e-04
Identities = 72/345 (20%), Positives = 109/345 (31%), Gaps = 107/345 (31%)
Query: 9 AVEHVQ-VLNAVRSKLPFLVTTADDAKDF---VKEEIRLRYRCLDLRRQQMNHNILLRHK 64
A H Q ++ AV + D + F V++ I + + + +R + N L
Sbjct: 270 ATGHSQGLVTAV------AIAETDSWESFFVSVRKAITVLFF-IGVRCYEAYPNTSLPPS 322
Query: 65 VVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLF----- 119
+++ LE+ G + +P+LS S V V T LP Q+
Sbjct: 323 ILE---DSLENNEG---VPSPMLSIS---NLTQEQVQDYVN-KTNSHLPAGKQVEISLVN 372
Query: 120 -KQMLMVSGFDKY-YQIARCFRDE----DLRADRQPEFTQLDMELAFTPLDDMLRLNEDL 173
+ L+VSG + Y + R L R P F++
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-FSE-------------------- 411
Query: 174 IRKI-----FLEIKDVQLPNPF--PRLTYAEAMSRYGSDRPDTRFSLQLND----VSDIF 222
RK+ FL + +PF L A D S D V D F
Sbjct: 412 -RKLKFSNRFLPVA-----SPFHSHLL--VPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 223 LESPFRVFSDSLKSGGIIKVLCV-PSGAKTYSNTALKKGDIY-NEAIKSGAKGLPFLKVL 280
S RV S S+ S I+ + P + + A +L
Sbjct: 464 DGSDLRVLSGSI-SERIVDCIIRLP---------------VKWETTTQFKA-----THIL 502
Query: 281 D--AGGVEGIPALVSSLGPSNKEQLLIRC-SAG-----PSDLILF 317
D GG G+ L NK+ +R AG P D F
Sbjct: 503 DFGPGGASGLGVLTH----RNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 42.0 bits (98), Expect = 4e-04
Identities = 43/329 (13%), Positives = 85/329 (25%), Gaps = 143/329 (43%)
Query: 166 M---LRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIF 222
M L + ++ D YG FS+ DI
Sbjct: 1631 MGMDLYKTSKAAQDVWNRA-DNHF------------KDTYG-------FSIL-----DIV 1665
Query: 223 LESPFRVFSDSLKSGGIIKVLCVPSGAKTYSN-TALKKGDIYNEAIKSGAKGLPFLKVLD 281
+ +P + ++ GG G + N +A+ I+ + K K ++
Sbjct: 1666 INNPVNL---TIHFGG-------EKGKRIRENYSAM----IFETIVDGKLKTEKIFKEIN 1711
Query: 282 AGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLI---------LFAVGHPASV------- 325
E L+ L +
Sbjct: 1712 -------------------EHSTSYTFRSEKGLLSATQFTQPALTLM----EKAAFEDLK 1748
Query: 326 NKTLDRLRTFVA-HELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHH-----PFTAPN 379
+K L A H LG E+ AL
Sbjct: 1749 SKGLIPADATFAGHSLG------------------EYA-------ALASLADVMSI---- 1779
Query: 380 PEDMDDLSSARALA--------------YDMV-YNGVEIGGG----SLRIYKREVQQK-- 418
E + ++ R + Y M+ N + +L+ V ++
Sbjct: 1780 -ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 419 -VLEIVG--ISPEQFIFA-EVVAIPALSS 443
++EIV + +Q++ A ++ A+ +++
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Score = 36.2 bits (83), Expect = 0.024
Identities = 44/315 (13%), Positives = 95/315 (30%), Gaps = 108/315 (34%)
Query: 52 RQQMNHNILLRHKVVKLIR----RYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPG 107
Q M ++ K + + + +D +GF S + + P +
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF----------SILDIVINN--PVNL--- 1672
Query: 108 TFYALPQSPQ----LFKQMLMVSGFDKYYQIARCFRDEDLRAD-----------RQPEFT 152
T + + + + M+ + D + + F++ + + +FT
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 153 Q---LDMELA---------FTPLDDM------------------LRLNEDLIRKIFLEIK 182
Q ME A P D + + E L+ +F
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI-ESLVEVVFY--- 1788
Query: 183 DVQLPNPFPR-LTYAEAMSRYGSDRPDTR-FSLQLNDVSDIFLESPFRVFSDSL--KSGG 238
R +T A+ R R + ++ V+ F + + + + ++G
Sbjct: 1789 ---------RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 239 IIKVLCVPSGAKTYSNTALKKGDIYNEA----IKSG-AKGLPFL-KVLDAGGVEGIP--A 290
++++ V N YN + +G + L + VL+ ++ I
Sbjct: 1840 LVEI--V--------N--------YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 291 LVSSLGPSN-KEQLL 304
L SL + L
Sbjct: 1882 LQKSLSLEEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 7e-08
Identities = 56/373 (15%), Positives = 101/373 (27%), Gaps = 146/373 (39%)
Query: 10 VEHVQVLNA--VRSKLPFLVTTAD----DA---------------KDFVKEEIR------ 42
V++ + NA + K+ L+TT D +E++
Sbjct: 253 VQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 43 LRYRCLDLRRQQMNHNILL------------------RH----KVVKLI----------- 69
L R DL R+ + N +H K+ +I
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 70 -RRYLEDVHGF---VEIETPVLSR----STPEGARDY--------LVPSRVQPGTFY--- 110
R+ + + F I T +LS LV + + T
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 111 -------ALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDL-------------------- 143
L L + ++ +Y I + F +DL
Sbjct: 431 IYLELKVKLENEYALHRSIV------DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 144 -RADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRL-TYAEAMSR 201
+R F + ++ F L + + + N +L Y
Sbjct: 485 EHPERMTLFRMVFLDFRF--------LEQKIRHDSTAWNASGSILNTLQQLKFY----KP 532
Query: 202 YGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTAL--KK 259
Y D D ++ +N + D FL S K ++++ AL +
Sbjct: 533 YICDN-DPKYERLVNAILD-FLPKIEENLICS-KYTDLLRI-------------ALMAED 576
Query: 260 GDIYNEAIKSGAK 272
I+ EA K +
Sbjct: 577 EAIFEEAHKQVQR 589
Score = 50.2 bits (119), Expect = 1e-06
Identities = 59/411 (14%), Positives = 106/411 (25%), Gaps = 143/411 (34%)
Query: 25 FLVTTADDAKDFVKEEIRLRYR--CLDLRRQQMNHNILL------------RHKVVKLIR 70
F+ F+ I+ R + R + L R + +R
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 71 RYLED--------VHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQM 122
+ L + + G + + + Y V ++ F+
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQCKMDFKIFWL----------- 187
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF-TPLDDMLRLNEDLIRKIFLEI 181
+ C E + L+M +D D I L I
Sbjct: 188 ----------NLKNCNSPETV----------LEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 182 KDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIK 241
+Q + R +P L L +V + + F +L K
Sbjct: 228 HSIQ-----------AELRRLLKSKPYENCLLVLLNVQN---AKAWNAF--NLSC----K 267
Query: 242 VLCVPSGAKTYSN--TALKKGDIYNEAIKSG-----AKGLPFLKVLDAG-------GVEG 287
+L + + K ++ +A I + K L LK LD +
Sbjct: 268 IL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTT 325
Query: 288 IPALVSSLGPS--------------NKEQL--LIRCSA---GPS-------DLILFAVGH 321
P +S + S N ++L +I S P+ L +F
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---- 381
Query: 322 PASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALH 372
P S + L S++W +D + LH
Sbjct: 382 PPSAHIPTILL----------------SLIWFDV----IKSDVMVVVNKLH 412
Score = 49.1 bits (116), Expect = 2e-06
Identities = 56/449 (12%), Positives = 120/449 (26%), Gaps = 126/449 (28%)
Query: 49 DLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGT 108
+ Q + +L + + D ++ +LS+ E + V GT
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNF--DCKDVQDMPKSILSKE--EIDHIIMSKDAVS-GT 64
Query: 109 ---FYALPQSPQLFKQMLMVSGFDKYYQ-IARCFRDEDLRADRQPEFTQLDMELAFTPLD 164
F+ L + Q + Y+ + + E RQP + + D
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ----RQPS---MMTRMYIEQRD 117
Query: 165 DMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLE 224
+ N+ + K V P+ +L +A+ L+L ++ ++
Sbjct: 118 RLYNDNQ-VFAKYN-----VSRLQPYLKLR--QAL-------------LELRPAKNVLID 156
Query: 225 SPFRVFSDSLKSGGIIK-VLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKV--LD 281
G K + + ++ + F K+ L+
Sbjct: 157 GV----------LGSGKTWVA----LDVCLSYKVQCK-------------MDF-KIFWLN 188
Query: 282 AGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVA---H 338
++ L ++LL + + + ++ LR + +
Sbjct: 189 LKNCNSPETVLEML-----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 339 ELGLI--DNSKHSILW-----------------ITDFPMFEWNDSEQRLEALHHPFTAPN 379
E L+ N +++ W +TDF + + L+ T
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDE 302
Query: 380 PEDM---------DDL-SSARA---LAYDMVYNGVEIGGGSLRI--YKREVQQKVLEIVG 424
+ + DL ++ I G +K K+ I+
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 425 ISPEQ-------------FIFAEVVAIPA 440
S +F IP
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Score = 32.9 bits (74), Expect = 0.23
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 4/84 (4%)
Query: 4 GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCL-DLRR--QQMNHNIL 60
F+E + H + + K ++ + R + + ++ N L
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN-L 559
Query: 61 LRHKVVKLIRRYLEDVHGFVEIET 84
+ K L+R L + E
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEA 583
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 52.6 bits (126), Expect = 8e-08
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 20/158 (12%)
Query: 62 RHKVVKLIRRYLEDVHGFVEIETPVL------SRSTPEGARDYLVPSRVQPGTFYAL--- 112
K+ + I R+ D GF+EI++P+L R + L + + L
Sbjct: 79 LGKLEREITRFFVD-RGFLEIKSPILIPLEYIERMGIDN-DTELSKQIFRVDKNFCLRPM 136
Query: 113 ---PQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL--AFTPLDDML 167
L K + K ++I C+R E + EFT L + +++
Sbjct: 137 LTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLE 196
Query: 168 RLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSD 205
+ D + + ++ K V + + + + D
Sbjct: 197 SIITDFLNHLGIDFKIV-GDSCMV---FGDTLDVMHGD 230
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 43.7 bits (103), Expect = 6e-05
Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 43 LRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETP-VLSRSTPE----GARD 97
+ L + + + ++ + + + L GFV++ TP ++++S G
Sbjct: 54 MSQGKRHLEQLRTVKHRPALLELEEKLAKALHQ-QGFVQVVTPTIITKSALAKMTIGEDH 112
Query: 98 YLVPSRVQPGTFYAL-----PQSPQLFKQMLMVSGFD---KYYQIARCFRDEDLRADRQP 149
L L P L++++ +D + ++I C+R E A
Sbjct: 113 PLFSQVFWLDGKKCLRPMLAPNLYTLWRELE--RLWDKPIRIFEIGTCYRKESQGAQHLN 170
Query: 150 EFTQLDMELAFTPLDDMLRLNEDLIRKIF--LEIKDVQL 186
EFT L++ TPL++ + ED+ R + I++ +L
Sbjct: 171 EFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIREFEL 209
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 39.6 bits (92), Expect = 0.002
Identities = 21/222 (9%), Positives = 50/222 (22%), Gaps = 46/222 (20%)
Query: 4 GFIEVAVEHV-QVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
GF E + + + P + D + + Q+ +
Sbjct: 82 GFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE-KISQIEKLGIKV 140
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSR------STPEGARDYLVPSRVQPGTFYALPQ-- 114
+ + +++ L + ++ L + ++ F
Sbjct: 141 SEHKESLQKILH-GYKKGTLDGDDLVLEISNALEISSE-----MGLKILEDVFPEFKDLT 194
Query: 115 ------------SPQLFKQM--LMVSGFD--KYYQIARCFRDEDLR-ADRQPEFTQL--- 154
+ F + LM K + I RCFR E +
Sbjct: 195 AVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCA 254
Query: 155 --DMELAFTPLDDMLRLNEDLIRKIFLEIKDVQL---PNPFP 191
+ + E L+ + + +
Sbjct: 255 IAGEGVDINDGKAIA---EGLLSQFG--FTNFKFIPDEKKSK 291
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 38.8 bits (90), Expect = 0.003
Identities = 21/222 (9%), Positives = 50/222 (22%), Gaps = 46/222 (20%)
Query: 4 GFIEVAVEHV-QVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
GF E + + + P + D + + Q+ +
Sbjct: 82 GFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE-KISQIEKLGIKV 140
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSR------STPEGARDYLVPSRVQPGTFYALPQ-- 114
+ + +++ L + ++ L + ++ F
Sbjct: 141 SEHKESLQKILH-GYKKGTLDGDDLVLEISNALEISSE-----MGLKILEDVFPEFKDLT 194
Query: 115 ------------SPQLFKQM--LMVSGFD--KYYQIARCFRDEDLR-ADRQPEFTQL--- 154
+ F + LM K + I RCFR E +
Sbjct: 195 AVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCA 254
Query: 155 --DMELAFTPLDDMLRLNEDLIRKIFLEIKDVQL---PNPFP 191
+ + E L+ + + +
Sbjct: 255 IAGEGVDINDGKAIA---EGLLSQFG--FTNFKFIPDEKKSK 291
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 36.9 bits (85), Expect = 0.015
Identities = 21/222 (9%), Positives = 50/222 (22%), Gaps = 46/222 (20%)
Query: 4 GFIEVAVEHV-QVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
GF E + + + P + D + + Q+ +
Sbjct: 82 GFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE-KISQIEKLGIKV 140
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSR------STPEGARDYLVPSRVQPGTFYALPQ-- 114
+ + +++ L + ++ L + ++ F
Sbjct: 141 SEHKESLQKILH-GYKKGTLDGDDLVLEISNALEISSE-----MGLKILEDVFPEFKDLT 194
Query: 115 ------------SPQLFKQM--LMVSGFD--KYYQIARCFRDEDLR-ADRQPEFTQL--- 154
+ F + LM K + I RCFR E +
Sbjct: 195 AVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCA 254
Query: 155 --DMELAFTPLDDMLRLNEDLIRKIFLEIKDVQL---PNPFP 191
+ + E L+ + + +
Sbjct: 255 IAGEGVDINDGKAIA---EGLLSQFG--FTNFKFIPDEKKSK 291
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 36.1 bits (84), Expect = 0.023
Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 45/158 (28%)
Query: 59 ILLRHKVVKLIRRYLEDVHGFVEIETPV------LSRSTPE------------GARDY-L 99
+ R + + + GF E + PV R E G L
Sbjct: 43 MRCRRHLFDVFHATAKT-FGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVAL 101
Query: 100 VPSRVQPGT-----FYA--LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFT 152
P T K +Y I +C+R E + R+ E
Sbjct: 102 RPE----MTPSLARLLLGKGRSLLLPAK----------WYSIPQCWRYEAITRGRRREHY 147
Query: 153 QLDMEL--AFTPLDD--MLRLNEDLIRKIFLEIKDVQL 186
Q +M++ + + ++ +R + L KDV +
Sbjct: 148 QWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGI 185
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 35.3 bits (81), Expect = 0.040
Identities = 21/222 (9%), Positives = 50/222 (22%), Gaps = 46/222 (20%)
Query: 4 GFIEVAVEHV-QVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
GF E + + + P + D + + Q+ +
Sbjct: 82 GFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE-KISQIEKLGIKV 140
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSR------STPEGARDYLVPSRVQPGTFYALPQ-- 114
+ + +++ L + ++ L + ++ F
Sbjct: 141 SEHKESLQKILH-GYKKGTLDGDDLVLEISNALEISSE-----MGLKILEDVFPEFKDLT 194
Query: 115 ------------SPQLFKQM--LMVSGFD--KYYQIARCFRDEDLR-ADRQPEFTQL--- 154
+ F + LM K + I RCFR E +
Sbjct: 195 AVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCA 254
Query: 155 --DMELAFTPLDDMLRLNEDLIRKIFLEIKDVQL---PNPFP 191
+ + E L+ + + +
Sbjct: 255 IAGEGVDINDGKAIA---EGLLSQFG--FTNFKFIPDEKKSK 291
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 33.0 bits (76), Expect = 0.19
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 130 KYYQIARCFRDEDLRADRQPEFTQLDMEL 158
+ + +R + + EF QL +EL
Sbjct: 105 RLAYQSNVYRAQQNEGGKPAEFEQLGVEL 133
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 31.9 bits (73), Expect = 0.42
Identities = 27/138 (19%), Positives = 40/138 (28%), Gaps = 49/138 (35%)
Query: 59 ILLRHKVVKLIRRYLEDVHGFVEIETPV------LSRSTPEGARDYLVPSRVQPGTFYAL 112
L ++ IRR E +GF IETP L +G D ++ Y L
Sbjct: 26 KRLELYLLDTIRRVYE-SYGFTPIETPAVERLEVLQAKGNQG--DNII---------YGL 73
Query: 113 PQSPQLFKQMLMVSGFD-------------------------------KYYQIARCFRDE 141
+Q D YQ+ FR E
Sbjct: 74 EPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGE 133
Query: 142 DLRADRQPEFTQLDMELA 159
+ R +F Q D+++
Sbjct: 134 RAKDGRFRQFRQCDIDVV 151
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 31.8 bits (73), Expect = 0.42
Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 54/130 (41%)
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPV------LSRST----------------------P 92
+ + K E GF I+ P + P
Sbjct: 22 VEKFIFKTAEEAAEA-FGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIP 80
Query: 93 EG----ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ 148
E R P ++Y + +R E+ +A R
Sbjct: 81 EATPSTVRMV-----TSRKD-LQRPL---------------RWYSFPKVWRYEEPQAGRY 119
Query: 149 PEFTQLDMEL 158
E Q + ++
Sbjct: 120 REHYQFNADI 129
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 31.4 bits (72), Expect = 0.56
Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 12/111 (10%)
Query: 130 KYYQIARCFRDEDLRADRQPEFTQLDMEL--AFTPLDD--MLRLNEDLIRKIFLEIKDVQ 185
+Y + FR E R E Q+ +EL + +L L +I + L +
Sbjct: 119 RYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQ--LGLNKTV 176
Query: 186 LP-----NPFPRLTYAEAMSRYGSDRPDTRFSLQL-NDVSDIFLESPFRVF 230
A+ + ++ + L + R
Sbjct: 177 FEIGSAKFFQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELRGL 227
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.6
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 15/31 (48%)
Query: 366 QRLEA---LHHPFTAPNPEDMDDLSSARALA 393
++L+A L+ +AP ALA
Sbjct: 23 KKLQASLKLYADDSAP------------ALA 41
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 29.6 bits (67), Expect = 2.2
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 130 KYYQIARCFRDEDLRADRQP------EFTQLDMELA 159
++ R +R D A E TQ+ +E
Sbjct: 119 RWCYCERVYRRTDDPASLSWASGKAAESTQVGIERI 154
Score = 27.7 bits (62), Expect = 8.4
Identities = 2/22 (9%), Positives = 7/22 (31%), Gaps = 3/22 (13%)
Query: 69 IRRYLEDV---HGFVEIETPVL 87
+ L G+ + + +
Sbjct: 43 VETRLLSFVEDAGYEPVTSGLF 64
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 29.1 bits (66), Expect = 2.5
Identities = 5/41 (12%), Positives = 9/41 (21%), Gaps = 3/41 (7%)
Query: 109 FYALPQSPQL---FKQMLMVSGFDKYYQIARCFRDEDLRAD 146
S +L + A+ D R+
Sbjct: 173 VMGASHSSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSL 213
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 29.3 bits (66), Expect = 2.7
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 9/57 (15%)
Query: 324 SVNKTLDRLRTFVAHELGLIDNSKHSILWITDF--PMFEWNDSEQRL---EALHHPF 375
L + + + I DF PM + D +R ++HP+
Sbjct: 284 ISKLKFWPLEDVLTEKYKFSKDEAKEIS---DFLSPMLQL-DPRKRADAGGLVNHPW 336
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target
9450D, isomerase, PSI-2, protein structure initiative;
2.20A {Corynebacterium glutamicum}
Length = 383
Score = 29.1 bits (66), Expect = 2.7
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 370 ALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRI 410
+L + +L + L + E G + I
Sbjct: 314 SLQFAASTKAISYGTELFGPQLLKDTYIVQEFEYKDGQVAI 354
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_F
Length = 190
Score = 27.4 bits (61), Expect = 3.5
Identities = 4/42 (9%), Positives = 7/42 (16%), Gaps = 2/42 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIR 42
K V ++ + K V
Sbjct: 22 AKVV--TVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFG 61
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Length = 104
Score = 27.4 bits (61), Expect = 3.6
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIR 42
M++G + + + + A+R+ LV +++ K EI
Sbjct: 18 MRSG--KATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIE 57
>1w41_A 50S ribosomal protein L30E; electrostatic interactions,
thermostability, protein engineering; 1.7A
{Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A
1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A
3n4z_A 2bo1_A
Length = 101
Score = 27.0 bits (60), Expect = 4.2
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIR 42
TG ++ + + + + L+ A +A+ +KE+I
Sbjct: 12 QDTG--KIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIE 51
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function,
PSI, protein structure initiative, midwest center for
structural genomics; 1.71A {Bacillus subtilis} SCOP:
b.34.15.1
Length = 128
Score = 27.6 bits (61), Expect = 4.3
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 95 ARDYLV-PSRVQPGTFYALPQSPQLFK 120
A+ YL+ P PG Y + + F
Sbjct: 70 AKAYLLNPEDYSPGETYRVENTEDEFT 96
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor,
ribonucleoprotein, structural genomics, NPPSFA; 1.90A
{Methanocaldococcus jannaschii}
Length = 110
Score = 27.1 bits (60), Expect = 4.8
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIR 42
+ TG +V + + + V+ LV A + ++E+++
Sbjct: 17 VDTG--KVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVK 56
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A
{Homo sapiens} PDB: 2zkr_6 1ysh_C
Length = 125
Score = 27.1 bits (60), Expect = 5.4
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIR 42
MK+G + + + Q L +R LV A++ K EI
Sbjct: 23 MKSG--KYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIE 62
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 28.2 bits (63), Expect = 6.3
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 358 MFEWNDSEQRL---EALHHPF---TAPNPEDMDDLSSAR 390
EW D R+ +AL HP+ P P + S R
Sbjct: 392 CLEW-DPAVRMTPGQALRHPWLRRRLPKPPTGEKTSVKR 429
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase;
2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Length = 301
Score = 28.0 bits (61), Expect = 6.8
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 326 NKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTA 377
+R R +AHE+ L +E + EQ +E L + A
Sbjct: 90 QVRPERQRFTLAHEISHALLLGDDDLLSDLHDEYEGDRLEQVIETLCNVGAA 141
>4dwe_A Uncharacterized protein; hypothetical protein, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; 2.01A {Bacteroides ovatus}
Length = 480
Score = 27.9 bits (61), Expect = 8.4
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 205 DRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYN 264
D+ + + Q + E + K+L P+G K Y AL+ I
Sbjct: 202 DKTEDKLLAQFPVAQSMIREK---------LNNRTCKMLAEPNGDKNYIKAALRYDKIRT 252
Query: 265 EAIKSGAKGL-PFLKVLDAGGV 285
+SGA L PF + D V
Sbjct: 253 LCAQSGATKLYPFQENGDIEQV 274
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 27.9 bits (63), Expect = 8.4
Identities = 7/71 (9%), Positives = 19/71 (26%)
Query: 247 SGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIR 306
K + + N+ I S +++ + + + E +
Sbjct: 126 IQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDF 185
Query: 307 CSAGPSDLILF 317
S ++ F
Sbjct: 186 SSTPADEVAFF 196
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA,
nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Length = 455
Score = 27.8 bits (61), Expect = 8.8
Identities = 13/133 (9%), Positives = 38/133 (28%), Gaps = 17/133 (12%)
Query: 98 YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRA------DRQPEF 151
Y++P+ + G + L D + + + R +++ +
Sbjct: 270 YMIPTGLILGKMV----KWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHL 325
Query: 152 TQLDMELAFTPLDDMLRLN--EDLIRKIFLEIKDVQLPN--PFPRLTYAEAMSRYGSDRP 207
+ L + L + +LI+ + N P+ + +S +
Sbjct: 326 CARQL---LIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFED 382
Query: 208 DTRFSLQLNDVSD 220
+ + +
Sbjct: 383 PGAQEITIYNGIH 395
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.404
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,200,381
Number of extensions: 463287
Number of successful extensions: 1317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1230
Number of HSP's successfully gapped: 85
Length of query: 452
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 355
Effective length of database: 3,993,456
Effective search space: 1417676880
Effective search space used: 1417676880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)