RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 043787
(452 letters)
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 182 bits (463), Expect = 3e-54
Identities = 107/180 (59%), Positives = 138/180 (76%), Gaps = 2/180 (1%)
Query: 31 DDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRS 90
D+ EE RL+YR LDLRR +M + R K+ L+RR+++D HGF++IETP+L+++
Sbjct: 4 LDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDD-HGFLDIETPMLTKA 62
Query: 91 TPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPE 150
TPEGARDYLVPSRV G FYALPQSPQLFKQ+LM+SGFD+YYQI +CFRDEDLRADRQPE
Sbjct: 63 TPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPE 122
Query: 151 FTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTR 210
FTQ+D+E +F + + E L+R ++LE+K V L FP +T+AEA RYGSD+PD R
Sbjct: 123 FTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDL-GDFPVMTFAEAERRYGSDKPDLR 181
Score = 58.2 bits (140), Expect = 7e-10
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Query: 330 DRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS- 388
+ R + + + L D SK + LW+ DFPMFE D E L A+HHPFT+P +L +
Sbjct: 168 EAERRYGSDKPDLRDESKWAPLWVIDFPMFED-DGEGGLTAMHHPFTSPKDMTAAELKAA 226
Query: 389 ---ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSG 444
A A AYDMV NG E+GGGS+RI+ ++QQ V I+GI+ E+ + AL G
Sbjct: 227 PENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYG 285
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 165 bits (418), Expect = 1e-47
Identities = 116/189 (61%), Positives = 149/189 (78%), Gaps = 3/189 (1%)
Query: 24 PFLVTTADDAKDFVK--EEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVE 81
PF V ++ + EE+RL+YR LDLRR++M N+ LRH+V+K I +L+ GFV+
Sbjct: 3 PFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDR-EGFVQ 61
Query: 82 IETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
+ETP L++STPEGARD+LVP R +PG FYALPQSPQLFKQMLMV+G D+Y+QIARCFRDE
Sbjct: 62 VETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDE 121
Query: 142 DLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSR 201
DLRADRQP+FTQLD+E++F ++D+L LNE L+ +F E V+LP PFPRL+Y EAM R
Sbjct: 122 DLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMER 181
Query: 202 YGSDRPDTR 210
YGSD+PD R
Sbjct: 182 YGSDKPDLR 190
Score = 74.8 bits (183), Expect = 2e-15
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
Query: 343 IDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS----ARALAYDMVY 398
+ LW+ DFP+ EW++ E+ +HHPFT+P+PED+ L RALAYD+V
Sbjct: 189 LRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVL 248
Query: 399 NGVEIGGGSLRIYKREVQQKVLEIVGISPEQ 429
NGVE+GGGS+RI+ +Q +V ++GI E+
Sbjct: 249 NGVEVGGGSIRIHDPRLQARVFRLLGIGEEE 279
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 130 bits (328), Expect = 3e-35
Identities = 41/194 (21%), Positives = 88/194 (45%), Gaps = 14/194 (7%)
Query: 48 LDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLS----RSTPEGARDYLVPSR 103
+++ ++++ + ++ K+++ + + GF + ++S P+ A + + P+
Sbjct: 3 VEIISREISPTLDIQTKILEYMTDFFVK-EGFKWLLPVIISPITDPLWPDPAGEGMEPAE 61
Query: 104 VQP-GTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRAD---RQPEFTQLDMELA 159
V+ G L S L KQ+ + G K + ++ R E + D EFTQLD E+
Sbjct: 62 VEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE 121
Query: 160 FTPLDDMLRLNEDLIRKIFLEIKDVQ-----LPNPFPRLTYAEAMSRYGSDRPDTRFSLQ 214
++D++RL E L+ +F + ++ F Y+E + +GSD ++ +
Sbjct: 122 RAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDEKASQEMEE 181
Query: 215 LNDVSDIFLESPFR 228
+ +I E R
Sbjct: 182 PFWIINIPREFYDR 195
Score = 35.1 bits (80), Expect = 0.011
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 394 YDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQF 430
+ Y E+ G R ++ E + G++ + F
Sbjct: 206 LILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSF 242
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 128 bits (322), Expect = 5e-34
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 39 EEIRLRYRCLDLRRQQMNHNIL-LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA-- 95
+E+R R R LDL + +R K++ IR+++ GF+E+ETP++ P GA
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVA-RGFMEVETPMMQ-VIPGGASA 59
Query: 96 RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLD 155
R ++ Y L +P+L+ + L+V GF++ ++I R FR+E + PEFT ++
Sbjct: 60 RPFITHHNALDLDMY-LRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMME 118
Query: 156 MELAFTPLDDMLRLNEDLIRKIFLEIKDVQ----------LPNPFPRLTYAEAMSRYGSD 205
+ +A+ D++ L E L R + E+ PF +LT EA+ +Y +
Sbjct: 119 LYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE 178
Query: 206 RPDTRFS 212
Sbjct: 179 TDMADLD 185
Score = 41.4 bits (96), Expect = 2e-04
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 19/115 (16%)
Query: 315 ILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHP 374
+ ++G + L R+ T + E+ + +IT++P P
Sbjct: 193 LAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQP--TFITEYPAE------------VSP 238
Query: 375 FTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQ 429
N + + ++ G EIG G + E Q + + +
Sbjct: 239 LARRNDVNPEI-----TDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAA 288
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 121 bits (303), Expect = 1e-31
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 45 YRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRV 104
YR + LR ++ + ++ +V+ RRYL+ F EI TP + R+ EG
Sbjct: 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDR-QDFTEIFTPKVVRAGAEGGSGLFGVDYF 59
Query: 105 QPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF-TP 162
L QSPQ + +MV F++ Y++A +R E+ R E+ LD+E+ F
Sbjct: 60 --EKRAYLAQSPQ-LYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIAD 116
Query: 163 LDDMLRLNEDLIRKIF 178
+D++RL E L+ ++
Sbjct: 117 EEDLMRLEEALLAEML 132
Score = 49.4 bits (117), Expect = 3e-07
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 348 HSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGS 407
L++T +P PF ED ++D+++ G+EI G
Sbjct: 199 SDWLFVTRYPRS------------VRPFYTYPEEDG------TTRSFDLLFRGLEITSGG 240
Query: 408 LRIYKREVQQKVLEIVGISPEQF 430
RI++ E + L+ G+ PE F
Sbjct: 241 QRIHRYEELLESLKAKGMDPEAF 263
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 118 bits (297), Expect = 2e-30
Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 24 PFLVTTADDA--------KDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLED 75
P L+ A + V + RL YR +DLR ++ V +L R YL
Sbjct: 1 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 60
Query: 76 VHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIA 135
F E+ TP L + EG + + + L QSPQ KQ L+V+ F++ Y+I
Sbjct: 61 -KKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAY--LAQSPQFNKQQLIVADFERVYEIG 117
Query: 136 RCFRDEDLRADRQ-PEFTQLDMELAF-TPLDDMLRLNEDLIRKIF 178
FR E+ R EFT LDME+AF ++L +L IF
Sbjct: 118 PVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIF 162
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 114 bits (286), Expect = 4e-29
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 13/195 (6%)
Query: 23 LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82
LP T A+ + RL R +DLRR ++ +R V K +R + + +GF+EI
Sbjct: 2 LPLDPTGKVKAE----LDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHE-NGFIEI 56
Query: 83 ETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDED 142
TP + + EG + + F +SPQL+K+++M SG D+ Y+IA FR E+
Sbjct: 57 HTPKIIATATEGGTELFPMKYFEEDAFL--AESPQLYKEIMMASGLDRVYEIAPIFRAEE 114
Query: 143 LRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY 202
R ++D + L R + I V+ N + +
Sbjct: 115 HNTTRHLNEAWSIDS-EMAFIEDEEEVMSFLERLVAHAINYVREHNAKE-----LDILNF 168
Query: 203 GSDRPDTRFSLQLND 217
+ P F D
Sbjct: 169 ELEEPKLPFPRVSYD 183
Score = 41.0 bits (95), Expect = 2e-04
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 347 KHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDM--DDLSSARALAYDMVYNGVEIG 404
+ + L L+ + P + D A+D+ Y GVEI
Sbjct: 201 DIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEIS 260
Query: 405 GGSLRIYKREVQQKVLEIVGISPEQF 430
G R ++ ++ + ++ G++PE F
Sbjct: 261 SGGQREHRHDILVEQIKEKGLNPESF 286
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain
{Escherichia coli [TaxId: 562]}
Length = 133
Score = 88.9 bits (220), Expect = 7e-22
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
Query: 213 LQLNDVSDIFLESPFRVFSDSLK-SGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKS-G 270
++L DV+D+ F VF+ G + L VP GA + K+ D Y +K G
Sbjct: 3 MELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGA----SLTRKQIDEYGNFVKIYG 58
Query: 271 AKGLPFLKVLDAGGVEGIP--ALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKT 328
AKGL ++KV + + L E +L R +A D+I F + V
Sbjct: 59 AKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADA 118
Query: 329 LDRLRTFVAHELGL 342
+ LR V +LGL
Sbjct: 119 MGALRLKVGKDLGL 132
>d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 120
Score = 80.4 bits (198), Expect = 6e-19
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 211 FSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKS- 269
F L+L +V +F +S FRVF + +K L +P K+ E K
Sbjct: 1 FGLELKEVGPLFRQSGFRVFQE----AESVKALALPKALSR------KEVAELEEVAKRH 50
Query: 270 GAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTL 329
A+GL + +V + G G+ + +E LL A P D +LF G L
Sbjct: 51 KAQGLAWARVEEGGFSGGVAKFL----EPVREALLQATEARPGDTLLFVAGPRKVAATAL 106
Query: 330 DRLRTFVAHELGL 342
+R A LGL
Sbjct: 107 GAVRLRAADLLGL 119
>d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase
subunit E, GatE, insert domain {Pyrococcus abyssi
[TaxId: 29292]}
Length = 131
Score = 77.3 bits (190), Expect = 7e-18
Identities = 12/123 (9%), Positives = 35/123 (28%), Gaps = 9/123 (7%)
Query: 212 SLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKS-G 270
+ DV+DIF + ++ + +K GG + + +P ++
Sbjct: 7 KEEFYDVTDIFENTKSKIIARVIKKGGKVLAIKLPKFRGLIG----REIQPGRRLGTEFA 62
Query: 271 AKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLD 330
+ ++ + + +++ R + D + L
Sbjct: 63 DRAKKYVPGIF----HIDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALR 118
Query: 331 RLR 333
+
Sbjct: 119 EVI 121
>d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase
subunit E, GatE, insert domain {Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 125
Score = 63.9 bits (155), Expect = 4e-13
Identities = 17/128 (13%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 210 RFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTAL---KKGDIYNEA 266
++ DVS++F ++ R+ S + + + + G +
Sbjct: 2 VVEDKIFDVSEVFADTESRII----SSAESVLAVKLRGFDGLIGVEIQPGRRLGTEMADY 57
Query: 267 IKS-GAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASV 325
K G G+ L A G + L A D ++ +
Sbjct: 58 AKKRGVSGIFHTDELPAYG----------ITEEEVRGLRDAVGASQGDAVVMVAHERVTA 107
Query: 326 NKTLDRLR 333
L +
Sbjct: 108 ENALREVI 115
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 33.8 bits (76), Expect = 0.035
Identities = 25/190 (13%), Positives = 51/190 (26%), Gaps = 21/190 (11%)
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETP------VLSRSTPEGA-----------RDYLVPSR 103
+ + + + + EI TP + +R +
Sbjct: 18 KWRYIENQLDELMTF-YNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSIT 76
Query: 104 VQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA---F 160
++P A+ +S K + K Y FR E + R +F Q +E
Sbjct: 77 LRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAEN 136
Query: 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSD 220
+D + I + F + N + + + + +D
Sbjct: 137 PSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQS 196
Query: 221 IFLESPFRVF 230
P R+
Sbjct: 197 RLHTDPMRIL 206
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 28.1 bits (62), Expect = 0.88
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1 MKTGFIEVAVEHVQVLNA 18
+ TG +EV + ++VL
Sbjct: 85 LATGRVEVELSALEVLAE 102
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 29.3 bits (64), Expect = 0.98
Identities = 3/33 (9%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRS 90
+ ++ +R+ + E+ P +
Sbjct: 14 QVKSLRQIEGRLRKLFSL-KNYQEVMPPSFEYT 45
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 27.7 bits (61), Expect = 1.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MKTGFIEVAVEHVQVLNA 18
M TG IEV + ++N
Sbjct: 87 MATGEIEVLASSLTIINR 104
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 28.9 bits (63), Expect = 1.1
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVL 87
+ + K E GF I+ P L
Sbjct: 20 VEKFIFKTAEEAAEA-FGFRRIDFPSL 45
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 27.5 bits (61), Expect = 1.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLP 24
G +EV + V+VL+ P
Sbjct: 70 KAPGGLEVQAKEVEVLSPALEPTP 93
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 28.5 bits (62), Expect = 1.6
Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 20/152 (13%)
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETP------VLSRSTPEGA---RDYLVPSRVQPGTFYA 111
+ ++ ++ L +G+ EI P + R+ E + + G
Sbjct: 18 IWQRIEGTLKNVLGS-YGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLT 76
Query: 112 LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPE------FTQLDMEL--AFTPL 163
L + Y Q R + + +P+ F QL E+ P
Sbjct: 77 LRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPD 136
Query: 164 DDMLRLNE--DLIRKIFLEIKDVQLPNPFPRL 193
D + R + + N L
Sbjct: 137 IDAELIMLTARWWRALGISEHVTLELNSIGSL 168
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 28.4 bits (62), Expect = 1.7
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVL 87
+ ++V R+ LE G +E+ TP+
Sbjct: 18 MHQRIVATARKVLEA-AGALELVTPIF 43
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 98
Score = 26.6 bits (59), Expect = 2.4
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIR 42
TG I + + + + L+ A +A+ +KE+I
Sbjct: 11 QDTGKIVMGAR--KSIQYAKMGGAKLIIVARNARPDIKEDIE 50
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 27.4 bits (60), Expect = 2.6
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 328 TLD--RLRTFVAHELGL-IDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD 384
TLD R TFVA G + ++ S P + +++
Sbjct: 3 TLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLS-------QVPGVSFTEQEVA 55
Query: 385 DL 386
DL
Sbjct: 56 DL 57
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30
(L30e) {Archaeon Thermococcus celer [TaxId: 2264]}
Length = 100
Score = 26.3 bits (58), Expect = 3.5
Identities = 5/42 (11%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIR 42
+ +G + + + +++ L+ A + + KE++
Sbjct: 11 IDSGKYTLGYR--KTVQSLKMGGSKLIIIARNTRPDRKEDLE 50
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
dulcis) [TaxId: 3755]}
Length = 170
Score = 26.6 bits (58), Expect = 5.2
Identities = 17/173 (9%), Positives = 37/173 (21%), Gaps = 25/173 (14%)
Query: 213 LQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAK 272
L N + I + P + + GI + + +
Sbjct: 2 LHDNPRNFINILPPNPIEPTIVTVLGI---------SNDFYQCSFSSLPFTTPPFGFFPS 52
Query: 273 GLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRL 332
L GP + L ++ S+ + D
Sbjct: 53 SSYPL-----PNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNV---KFNYYSNLTDLS 104
Query: 333 RTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDD 385
+ K ++ + + + + P P+D D
Sbjct: 105 H--------CVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTD 149
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 172
Score = 26.3 bits (57), Expect = 6.4
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 328 TLD--RLRTFVAHELGLIDNSKHSILW 352
LD R R +A +LG+ +S H +
Sbjct: 4 NLDSARFRYLMAEKLGIHPSSCHGWIL 30
>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus
[TaxId: 63363]}
Length = 106
Score = 25.5 bits (56), Expect = 6.8
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 163 LDDMLRLNEDLIRKIFLEIKDVQL 186
LD L+++ED+IR + ++IK+ ++
Sbjct: 80 LDFQLKIDEDVIRWLNIQIKESEV 103
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 97
Score = 25.1 bits (55), Expect = 7.8
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIR 42
+K+G + + + ++R L+ A + K E+
Sbjct: 10 IKSGKYTLGYK--STVKSLRQGKSKLIIIAANTPVLRKSELE 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.404
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,719,756
Number of extensions: 84455
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 36
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)