BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043788
         (387 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4E4Y|A Chain A, The Crystal Structure Of A Short Chain Dehydrogenase
           Family Protein From Francisella Tularensis Subsp.
           Tularensis Schu S4
          Length = 244

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 346 VTYGSRGTGLPARISKKLQKKNQVVILLDLKGNIFEEREKFL 387
           VT GS+G G  A +   LQ KN  VI +D++ +   E  KF+
Sbjct: 9   VTGGSKGIG-KAVVELLLQNKNHTVINIDIQQSFSAENLKFI 49


>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77
          Length = 493

 Score = 28.1 bits (61), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 155 EQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKS 214
           E++   +D +  ++ ++N   R +++       L     + + +LN+ T K+I G+TL  
Sbjct: 93  EELGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPL 152

Query: 215 YASHWPPQRWQEYEPLL 231
           + S +  QR+Q+ +PL+
Sbjct: 153 FQSSF--QRYQQIQPLI 167


>pdb|2UY1|A Chain A, Crystal Structure Of Cstf-77
          Length = 493

 Score = 28.1 bits (61), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 2/38 (5%)

Query: 194 DLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLL 231
           + + +LN+ T K+I G+TL  + S +  QR+Q+ +PL+
Sbjct: 132 NFELELNKITGKKIVGDTLPIFQSSF--QRYQQIQPLI 167


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,988,348
Number of Sequences: 62578
Number of extensions: 363828
Number of successful extensions: 891
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 7
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)