BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043788
         (387 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P37517|CCPB_BACSU Catabolite control protein B OS=Bacillus subtilis (strain 168)
           GN=ccpB PE=1 SV=1
          Length = 311

 Score = 35.4 bits (80), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 168 QIVKNLRKRCVESERTITLALEAFPSDLQDQ-LNQYTDKRIDGETLKSYASHWPP-QRWQ 225
           +IV  + K   + E   TL    +  D++ + L     K+IDG  + S A+HW     +Q
Sbjct: 76  KIVNGITKAAFQHEYATTLLPTNYNPDIEIKYLELLRTKKIDGLIITSRANHWDSILAYQ 135

Query: 226 EYEPLLSYCRDNGVQLLACG 245
           EY P+++ C D G   + C 
Sbjct: 136 EYGPVIA-CEDTGDIDVPCA 154


>sp|Q2JQ25|FOLD_SYNJB Bifunctional protein FolD OS=Synechococcus sp. (strain
           JA-2-3B'a(2-13)) GN=folD PE=3 SV=1
          Length = 293

 Score = 35.0 bits (79), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 21/81 (25%)

Query: 194 DLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRD---NGVQLLACG----- 245
           D  DQLNQ  D+R+DG  ++       P  W    PLL+   D   +G+  L  G     
Sbjct: 81  DTIDQLNQ--DERVDGILVQLPL----PPGWDPIPPLLAINPDKDVDGLHPLNLGRLLRG 134

Query: 246 -------TPLKVLRTVQAEGI 259
                  TPL V+R +QAEGI
Sbjct: 135 EPGLRSCTPLGVMRLLQAEGI 155


>sp|Q66652|BRLF1_EHV2 Putative transcription activator BRLF1 homolog OS=Equine
           herpesvirus 2 (strain 86/87) GN=50 PE=3 SV=1
          Length = 630

 Score = 32.3 bits (72), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 167 LQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKR----IDGETLKSYASHWPPQ 222
            +  ++LRKRC+ S +T++    AF + +QD    +T  R    I       +   +PP 
Sbjct: 96  FKFQQDLRKRCIASWKTLSGGRRAFMTVVQDIFTCFTTLRANELITPRQQAFFKLSYPPC 155

Query: 223 RWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLS 263
           R Q    +L+     G++ L      K+ +     GI   S
Sbjct: 156 RVQNVINILNVVHTQGIKDLKSLNMQKIKKRTPHAGIFSAS 196


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,191,792
Number of Sequences: 539616
Number of extensions: 5940958
Number of successful extensions: 24135
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 24127
Number of HSP's gapped (non-prelim): 37
length of query: 387
length of database: 191,569,459
effective HSP length: 119
effective length of query: 268
effective length of database: 127,355,155
effective search space: 34131181540
effective search space used: 34131181540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)