BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043789
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C889|PR1F2_ARATH PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1
Length = 189
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MTTYGTIPTET---PELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIE 57
MT YG IPT + P + + +S R K I+SG T RPW +S+ LP F + I
Sbjct: 1 MTNYGAIPTSSHPSPAIDLEYIS-RAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAIS 59
Query: 58 RIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFV 117
RI++N ++R NYA+ +L I+ +SL ++P SLI+L IL+ W+FLYFLRD + LVV+G+
Sbjct: 60 RIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRD-EPLVVFGYQ 118
Query: 118 IDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLG 177
IDDR ++ L T+ L LT T NI+ L V++ HA R +D++F DEE
Sbjct: 119 IDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFL--DEEAAA 176
Query: 178 SLQSNRVVPLP 188
+++ ++ P
Sbjct: 177 VTEASGLMSYP 187
>sp|Q9LIC7|PR1F4_ARATH PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1
Length = 188
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 11 TPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNY 70
+P ++ + +S R K+ I+ G T R W + S LP ++ RI++N A++R NY
Sbjct: 14 SPAVNHESIS-RAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNY 72
Query: 71 AVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPG 130
A++IL++I SL W+P SLI+ L+ W+FLYFLRD L V+ F IDDR ++ L
Sbjct: 73 AIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVP-LKVFRFQIDDRAVLIGLSVI 131
Query: 131 TIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
TI L LT+ T NI+ L G V++ HA R TDD+F DEE
Sbjct: 132 TIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFL--DEE 173
>sp|Q9LIC6|PR1F3_ARATH PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1
Length = 188
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 7/177 (3%)
Query: 1 MTTYGTIPTET---PELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIE 57
MT YG IPT + P + + LS R K I++G T R W S+ LP ++
Sbjct: 1 MTNYGAIPTSSHASPLVDVESLS-RAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFT 59
Query: 58 RIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFV 117
RI++N A++RMNYA+++L +I SL W+P SLI+ +L+ W+FLYFLRD + + ++ F
Sbjct: 60 RIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRD-EPIKLFRFQ 118
Query: 118 IDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
IDDR ++ L T+ L LT+ T NI+ L G V++ H+ R T+D+F DEE
Sbjct: 119 IDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFL--DEE 173
>sp|Q9FRR1|PRA1E_ARATH PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1
Length = 209
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 19 LSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSII 78
LS R K+ +S T RPW E + + ++ LP + + ++ N +++R NYA+ +L+I+
Sbjct: 32 LSARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIV 91
Query: 79 VVSLFWNPVSLIILIILIAAWLFLYFLRDG-DRLVVYGFVIDDRILMTALLPGTIAFLFL 137
+ L ++P+S+I I++ W+ LYF RD D +V+ G +DD+I++ L T+ L
Sbjct: 92 FLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVY 151
Query: 138 TDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQS 181
TDV +N+++ L IG +++ AH FR+TDD+F ++ R G L S
Sbjct: 152 TDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVS 195
>sp|Q9FZ63|PR1F1_ARATH PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1
Length = 180
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 3/178 (1%)
Query: 1 MTTYGTIPTETPELSS--QPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIER 58
MTTYGT + +L+ + ++ + + SG T RPW + + + S P A I R
Sbjct: 1 MTTYGTNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITR 60
Query: 59 IQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVI 118
I++N +++ NY +++L + +SL WNP SL++L+ L+ AWLFLYFLRD + L V+ I
Sbjct: 61 IRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRD-EPLTVFDREI 119
Query: 119 DDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERL 176
D RI++ + T++ LFLTD NI + + G + + +HA R T+D+F D+E L
Sbjct: 120 DHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETSL 177
>sp|O80915|PR1B4_ARATH PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1
Length = 220
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 99/180 (55%), Gaps = 12/180 (6%)
Query: 6 TIPTETPE-LSSQP---------LSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANF 55
T+P+ P + SQP ++ +++G RPW E ++ P S ++
Sbjct: 16 TVPSAAPSSVESQPPIATPAFRNFINQITETVKNGLSKRRPWAELADRSALSKPESISDA 75
Query: 56 IERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDR-LVVY 114
RI+ N +++++NY + +I+ SL +P SL+ L+ L+A+WLFLY R D+ +V++
Sbjct: 76 AVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLF 135
Query: 115 GFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
G DR + L+ +I +FLTDV ++ + IG +I AH FR+ +D+F D++E
Sbjct: 136 GRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLF-LDEQE 194
>sp|Q9M012|PR1B5_ARATH PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1
Length = 223
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 7/177 (3%)
Query: 8 PTETPELSSQPLSTR-----VKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSN 62
P T + SQP R V + G RPW E + + P S + R + N
Sbjct: 23 PIVTAVVESQPPVVRAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKN 82
Query: 63 AAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDR-LVVYGFVIDDR 121
++++R+NY I+ I+ SL +P SLI+L+ L A+WLFLY R DR L+++G +
Sbjct: 83 SSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEY 142
Query: 122 ILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGS 178
+ L+ TIA +F T V +I L IG I H FR+ DD+F D+++ S
Sbjct: 143 ETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLF-LDEQDHAAS 198
>sp|Q9LYN0|PR1B1_ARATH PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1
Length = 209
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 12/185 (6%)
Query: 1 MTTYGTIP-TETPELSSQP---------LSTRVKRLIESGFGTPRPWDEFIQIQSIKLPT 50
M T T+P T + SQP +R+ I G RPW E I S+ P
Sbjct: 1 MATPPTLPVTNQQAVQSQPPINTPAFRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPE 60
Query: 51 SFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDR 110
S + + RI+ N A++++NY I+ ++ SLF +P+SL++LI L+ W+FLY R D+
Sbjct: 61 SLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQ 120
Query: 111 -LVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFS 169
LVV+G DR + AL+ TI +F+T V + L IG ++ H F DD+F
Sbjct: 121 PLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLF- 179
Query: 170 ADDEE 174
D++E
Sbjct: 180 LDEQE 184
>sp|P93829|PRA1D_ARATH PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1
Length = 182
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query: 21 TRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVV 80
T +K +S G RPW +F+ + + P+S A+ R+ N +R+NY++I+ ++ +
Sbjct: 7 TGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGL 66
Query: 81 SLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDV 140
+L P++++ I + AW FLYF R+ + L ++GF IDD I+ L+ +I L T V
Sbjct: 67 TLITRPIAILAFIAVGLAWFFLYFARE-EPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125
Query: 141 TKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQSN 182
+ + G +V+ HA R TDD+ S D E G + S
Sbjct: 126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLST 167
>sp|Q9FH16|PR1G2_ARATH PRA1 family protein G2 OS=Arabidopsis thaliana GN=PRA1G2 PE=2 SV=1
Length = 186
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 101/178 (56%), Gaps = 7/178 (3%)
Query: 3 TYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSN 62
TY +IP T ++ S+ + + + + RPW E I LP SF++ + R ++N
Sbjct: 9 TYISIPLPTNDVVSRSIHN-----LTTAISSHRPWSELIFSGDFSLPESFSSLLLRSKTN 63
Query: 63 AAFYRMNYAVIILSIIVVSLF-WNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDR 121
++ +NY +I+ + +L +PV+LI++ +IA WL +F R+ D L+++ F + DR
Sbjct: 64 FNYFFVNYTIIVSTCAAFALITASPVALIVVGAIIALWLIFHFFRE-DPLILWSFQVGDR 122
Query: 122 ILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSL 179
++ L+ ++ ++ T+ N+ +G+ +G ++ HA FR++D++F +D+ G L
Sbjct: 123 TVLLFLVLASVWAIWFTNSAVNLAVGVSVGLLLCIIHAVFRNSDELFLEEDDAINGGL 180
>sp|Q9ZWD1|PR1G1_ARATH PRA1 family protein G1 OS=Arabidopsis thaliana GN=PRA1G1 PE=2 SV=1
Length = 187
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 95/169 (56%), Gaps = 4/169 (2%)
Query: 7 IPTETPELSS-QPLSTRVKRLIESGFGTPRPW-DEFIQIQSIKLPTSFANFIERIQSNAA 64
IP E LS+ +S V LI S + RPW EF+ SI P+SF+ + R++ N
Sbjct: 10 IPAEEISLSAGDVISLSVHNLIAS-VSSYRPWWSEFLAFGSIDRPSSFSPAVSRVKLNLH 68
Query: 65 FYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILM 124
+ +NY ++ + I + L +P++L+ + +A WL LYF RD LV+YG I DR+++
Sbjct: 69 HFAVNYVLLTAASITLFLIGDPMALVTVASFVAMWLLLYFYRD-HPLVLYGRHISDRVIV 127
Query: 125 TALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDE 173
L+ G++ L+ + + +I+G+ ++ HA R++DD+F + +
Sbjct: 128 FGLILGSLWALWFINSLQCLILGVVTSVLLCLVHAIIRNSDDLFVQEKD 176
>sp|Q9FLB6|PR1B3_ARATH PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1
Length = 217
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 15 SSQPLST--------RVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFY 66
S QP+ST R+ I RPW E + +I P S + RI+ N ++
Sbjct: 20 SQQPVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYF 79
Query: 67 RMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDR-LVVYGFVIDDRILMT 125
++NY I+ ++ +SL +P SL++L+ L AW+FLY R D+ LVV G DR +
Sbjct: 80 KVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLG 139
Query: 126 ALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
L+ TI +FLT V + L IG ++ H FR +D+F DD+E
Sbjct: 140 VLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLF-LDDQE 187
>sp|Q9SIY7|PR1B2_ARATH PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1
Length = 213
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 2/141 (1%)
Query: 35 RPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILII 94
RPW E + S P S + RI+ N A++++NY+ I+ ++ SL +P SL++L+
Sbjct: 47 RPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLS 106
Query: 95 LIAAWLFLYFLRDGDR-LVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTV 153
L+ +W+FLY R D+ LV++G DR + L+ TI +F+T V + L IG
Sbjct: 107 LLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIA 166
Query: 154 VIAAHAGFRSTDDMFSADDEE 174
++ H FR DD+F D++E
Sbjct: 167 IVCLHGAFRVPDDLF-LDEQE 186
>sp|Q9LYQ4|PR1B6_ARATH PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1
Length = 216
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 35 RPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILII 94
RPW E + + P S + R++ N +++R NY ++ ++ SL +P +L +L
Sbjct: 45 RPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLAS 104
Query: 95 LIAAWLFLYFLRDGDR-LVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTV 153
L A+WLFLYF R D+ LV+ G D + L T+ +F+T V ++ L +G +
Sbjct: 105 LAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIM 164
Query: 154 VIAAHAGFRSTDDMFSADDEERLGS 178
+A H FR+ +D+F +++E +GS
Sbjct: 165 GVAIHGAFRAPEDLF-LEEQEAIGS 188
>sp|Q1G3K7|PRA1C_ARATH PRA1 family protein C OS=Arabidopsis thaliana GN=PRA1C PE=2 SV=1
Length = 127
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 66 YRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMT 125
+R NY VI + I +S+ W PV L + +ILI AWL++Y RD + V++G VIDD L+
Sbjct: 3 FRTNYIVIFIVSIFISMLWQPVHLSVFVILIVAWLYVYS-RDNEPWVIFGSVIDDSTLVL 61
Query: 126 ALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSA--DDEERLG 177
LL TI LTDV++ I+IG+ G V+ H R +M DDEE++
Sbjct: 62 VLLVLTIGIFLLTDVSRGIVIGVLAGLPVVLVHGMCRRNTEMLFVLEDDEEKVA 115
>sp|Q9Z0S9|PRAF1_MOUSE Prenylated Rab acceptor protein 1 OS=Mus musculus GN=Rabac1 PE=1
SV=1
Length = 185
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 14/165 (8%)
Query: 20 STRVKRLIESGFG---------TPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNY 70
+T + +LI SG G T RPW F+ Q P + +R+ N +Y+ NY
Sbjct: 19 TTLLPKLIPSGAGREWLERRRATIRPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNY 78
Query: 71 AVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPG 130
+ L +I+ + +P+ L+ L + A LY +LV++G + AL G
Sbjct: 79 VFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKLVLFGREVSP-AHQYALAGG 137
Query: 131 -TIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
+ F +L + L V+I +HA F M AD EE
Sbjct: 138 VSFPFFWLAGAGSAVFWVLGATLVLIGSHAAF---HQMEPADGEE 179
>sp|Q9UI14|PRAF1_HUMAN Prenylated Rab acceptor protein 1 OS=Homo sapiens GN=RABAC1 PE=1
SV=1
Length = 185
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 20 STRVKRLIESGFG---------TPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNY 70
+T + +LI SG G T RPW F+ Q P + +R+ N +Y+ NY
Sbjct: 19 TTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNLGELCQRLVRNVEYYQSNY 78
Query: 71 AVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPG 130
+ L +I+ + +P+ L+ L + A LY +LV++G + L G
Sbjct: 79 VFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLVLFGREVSP--AHQYALAG 136
Query: 131 TIAFLF--LTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
I+F F L + L VVI +HA F + + D EE
Sbjct: 137 GISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIE---AVDGEE 179
>sp|O35394|PRAF1_RAT Prenylated Rab acceptor protein 1 OS=Rattus norvegicus GN=Rabac1
PE=1 SV=1
Length = 185
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 13 ELSSQPLSTRVKRLIESGFG---------TPRPWDEFIQIQSIKLPTSFANFIERIQSNA 63
E+ +T + +LI SG G T RPW F+ Q P + +R+ N
Sbjct: 12 EVEGLSATTLLPKLIPSGAGREWLERRRATIRPWGTFVDQQRFSRPRNVGELCQRLVRNV 71
Query: 64 AFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRIL 123
+Y+ NY + L +I+ + +P+ L+ L + A LY +LV++G +
Sbjct: 72 EYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKLVLFGREVSP-AH 130
Query: 124 MTALLPG-TIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
AL G + F +L + L V+I +HA F + AD EE
Sbjct: 131 QYALAGGVSFPFFWLAGAGSAVFWVLGATLVLIGSHAAFHQIE---PADGEE 179
>sp|Q8HY39|PRAF1_CANFA Prenylated Rab acceptor protein 1 OS=Canis familiaris GN=RABAC1
PE=2 SV=1
Length = 185
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 20 STRVKRLIESGFG---------TPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNY 70
+T + +LI SG G T RPW F+ + P + +R+ N +Y+ NY
Sbjct: 19 TTLLPKLIPSGAGRERLERRRATIRPWSSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNY 78
Query: 71 AVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPG 130
+ L +I+ + +P+ L+ L + A LY + V++G + AL G
Sbjct: 79 VFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKFVLFGREVSP-AHQYALAGG 137
Query: 131 -TIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
+ F +L + L VVI +HA F M + D EE
Sbjct: 138 VSFPFFWLAGAGSAVFWVLGATLVVIGSHAAF---HQMEAVDGEE 179
>sp|Q52NJ0|PRAF1_PIG Prenylated Rab acceptor protein 1 OS=Sus scrofa GN=RABAC1 PE=2 SV=1
Length = 185
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 20 STRVKRLIESGFG---------TPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNY 70
+T + +LI SG G T RPW F+ + P + +R+ N +Y+ NY
Sbjct: 19 TTLLPKLIPSGAGREWLERRRATIRPWGSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNY 78
Query: 71 AVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPG 130
+ L +I+ + +P+ L+ L + A LY + V++G + AL G
Sbjct: 79 VFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKFVLFGREVSP-AHQYALAGG 137
Query: 131 -TIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
+ F +L + L VVI +HA F + + D EE
Sbjct: 138 VSFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIE---AVDGEE 179
>sp|Q1RMH4|PRAF1_BOVIN Prenylated Rab acceptor protein 1 OS=Bos taurus GN=RABAC1 PE=2 SV=1
Length = 185
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 20 STRVKRLIESGFG---------TPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNY 70
+T + +LI SG G T R W F+ + P + +R+ N +Y+ NY
Sbjct: 19 ATLLPKLIPSGAGREWLERRRATIRSWGSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNY 78
Query: 71 AVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPG 130
+ L +I+ + +P+ L+ L + A LY + V++G + AL G
Sbjct: 79 VFVFLGLILYCVATSPMLLVALAVFFGACYILYLRTLQSKFVLFGREVSP-AHQYALAGG 137
Query: 131 -TIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
+ F +L + L VVI +HA F + + D EE
Sbjct: 138 VSFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIE---AVDGEE 179
>sp|Q54NS7|PRAFB_DICDI PRA1 family protein 2 OS=Dictyostelium discoideum GN=prafB PE=3
SV=2
Length = 158
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 35 RPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILII 94
+PW++FI+ +P S N I R++ N FY NY I+ +++++LF N L+ +++
Sbjct: 10 QPWNDFIEWGRYSIPGS-QNAITRMEDNLNFYSGNYIAIVAVVLLITLFTNMNLLVAILL 68
Query: 95 LIAAWLFLYFLRDGDR 110
L A +L+F++ GD+
Sbjct: 69 LGAIGYYLFFVQKGDK 84
>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1
Length = 241
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 14/138 (10%)
Query: 32 GTPRPWDE-FI-QIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSL 89
G PW FI S P+S R+ N + NYA + + +L+ P++L
Sbjct: 99 GDTTPWTTGFIGNCDSYSFPSSSQQARMRVHENIKRFARNYATLFIVFFACALYQMPLAL 158
Query: 90 IILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPG-----TIAFLFLTDVTKNI 144
+ L+ +A W + D + D M L G T L +V +
Sbjct: 159 VGLLGSLALWELFKYCSD-------KWKFDRHPSMRKLSIGIGQCATAVLLTFLNVQMAL 211
Query: 145 IIGLCIGTVVIAAHAGFR 162
L I V+ HAGFR
Sbjct: 212 FSALAISYSVMILHAGFR 229
>sp|Q8GWC3|PR1A2_ARATH PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2
SV=1
Length = 209
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 34 PRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLI 90
PR + EF P SF+ + R++ N +YR NY ++++ ++ ++L P++L+
Sbjct: 24 PRSFGEFFS--RFAFPRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALV 78
>sp|Q8W115|PR1A3_ARATH PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2
SV=1
Length = 209
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 32 GTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLI 90
+PR EF P SF+ ++ R++ N +YR NY ++ + ++ ++L P++++
Sbjct: 22 ASPRSLAEFFS--RFAFPRSFSKWMSRLKCNLYYYRTNYFILFVFVLGLALITRPLAIL 78
>sp|Q9UUN5|PRA1_SCHPO PRA1-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPCC306.02c PE=2 SV=1
Length = 171
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 9 TETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRM 68
T+ E S+ ++R + L SGF + EF+ ++ I P +F+ RI N + +
Sbjct: 9 TKVSETFSEIYASRAQYL--SGF---KSVGEFLDVRRISRPRNFSEAQSRISFNFSRFSS 63
Query: 69 NYAVIILSIIVVSLFWNP 86
NY II +++ +L NP
Sbjct: 64 NYLAIIAMLVIYALIRNP 81
>sp|Q9LZM7|PR1A1_ARATH PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2
SV=1
Length = 209
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 34 PRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSL 89
PRP EF +P S + R++ N +YR NY ++I+ I+ + + P+++
Sbjct: 24 PRPPSEFFS--RFTVPKSVPKWDSRLKCNLYYYRTNYFIMIVVILGLGVLTRPLAI 77
>sp|Q54XK1|PRAFA_DICDI PRA1 family protein 1 OS=Dictyostelium discoideum GN=prafA PE=3
SV=1
Length = 235
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 17 QPLSTRVKRLIESGFGTPRPWDEFI-QIQSIKLPTSFANFIERIQSNAAFYRMNYAVIIL 75
+++++K + T R W F+ Q LP + + RI+ N +++ NY ++ L
Sbjct: 83 NAITSKIKEFKQERMETTRDWRSFVGSRQQYGLP-NIKDTTSRIKENVVYFQSNYLILFL 141
Query: 76 SIIVVSLFWNPVSLIILIILIAAWLFLY---FLRDGDRLVVYG 115
V + NP L++L +L+ ++L+ L D R + YG
Sbjct: 142 CFSVFFIITNPFYLLLLGVLLFISVYLHNSTTLTDIQRKIAYG 184
>sp|P53633|PRA1_YEAST Prenylated Rab acceptor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YIP3 PE=1 SV=2
Length = 176
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 27 IESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVII 74
++S T R EF + I P +F R+ N ++ NY +II
Sbjct: 29 LQSKLATLRTPQEFFNFKKISKPQNFGEVQSRVAYNLKYFSSNYGLII 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,953,345
Number of Sequences: 539616
Number of extensions: 2603983
Number of successful extensions: 7961
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7912
Number of HSP's gapped (non-prelim): 49
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)