Query 043789
Match_columns 199
No_of_seqs 110 out of 447
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 14:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_C Fumarate reductase 15 k 70.0 23 0.0008 26.8 7.8 48 79-126 59-111 (130)
2 1fjk_A Cardiac phospholamban; 34.2 57 0.0019 20.3 3.8 28 57-84 22-49 (52)
3 3b5x_A Lipid A export ATP-bind 17.3 5.2E+02 0.018 23.1 8.7 20 51-70 120-139 (582)
4 2yl4_A ATP-binding cassette SU 15.8 5.2E+02 0.018 23.2 8.3 18 51-68 117-134 (595)
5 3arc_X Photosystem II PSBX pro 14.2 1.2E+02 0.004 18.2 2.2 19 139-157 4-22 (39)
6 2g40_A Conserved hypothetical 14.0 99 0.0034 24.9 2.5 54 6-68 15-69 (224)
7 3bz1_X Photosystem II PSBX pro 12.2 1E+02 0.0035 19.4 1.6 22 136-157 11-32 (50)
8 3b60_A Lipid A export ATP-bind 11.9 6.6E+02 0.022 22.5 7.8 20 51-70 120-139 (582)
9 2h8a_A Microsomal glutathione 11.5 4.3E+02 0.015 19.4 5.4 33 52-84 64-96 (154)
10 3qf4_B Uncharacterized ABC tra 11.1 7.2E+02 0.025 22.3 7.8 20 51-70 132-151 (598)
No 1
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=70.01 E-value=23 Score=26.79 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=27.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH----HHHhcCC-CceEEcCeeehhHHHHHH
Q 043789 79 VVSLFWNPVSLIILIILIAAWLF----LYFLRDG-DRLVVYGFVIDDRILMTA 126 (199)
Q Consensus 79 ~~~ll~~P~~ll~l~~~~~~~~~----l~~~~~~-~~~~i~gr~~~~~~~~~~ 126 (199)
.+.++.||+.+++=++.+++.++ .+...++ -++.++|+.++++.+..+
T Consensus 59 fv~fl~nPivvilniiaLaa~L~Ha~TwF~l~Pka~~I~v~~~~~~~~~i~~~ 111 (130)
T 1kf6_C 59 FVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKS 111 (130)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHcchhheeeeCCCcCChHHHHHH
Confidence 45678899877765544444322 0112222 257888888887765433
No 2
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=34.23 E-value=57 Score=20.29 Aligned_cols=28 Identities=11% Similarity=0.388 Sum_probs=20.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 043789 57 ERIQSNAAFYRMNYAVIILSIIVVSLFW 84 (199)
Q Consensus 57 ~Rv~~Nl~yF~~NY~li~~~~~~~~ll~ 84 (199)
...+.|+.---.|+.+|.+.++++|++.
T Consensus 22 ~qarqnlqelfvnfclilicllli~iiv 49 (52)
T 1fjk_A 22 QQARQNLQNLFINFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888889888877777776653
No 3
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=17.25 E-value=5.2e+02 Score=23.13 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHhHHHHHHHH
Q 043789 51 SFANFIERIQSNAAFYRMNY 70 (199)
Q Consensus 51 s~~~a~~Rv~~Nl~yF~~NY 70 (199)
+.++..+|+.+.+...+..|
T Consensus 120 ~~g~l~~rl~~d~~~i~~~~ 139 (582)
T 3b5x_A 120 STGGLLSRITYDSEQVAGAT 139 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45889999987776655544
No 4
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=15.82 E-value=5.2e+02 Score=23.23 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHhHHHHHH
Q 043789 51 SFANFIERIQSNAAFYRM 68 (199)
Q Consensus 51 s~~~a~~Rv~~Nl~yF~~ 68 (199)
+.++..+|+...+...+.
T Consensus 117 ~~g~l~~r~~~d~~~i~~ 134 (595)
T 2yl4_A 117 RTGELINRLSSDTALLGR 134 (595)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 458999999877665443
No 5
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=14.17 E-value=1.2e+02 Score=18.17 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=10.2
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 043789 139 DVTKNIIIGLCIGTVVIAA 157 (199)
Q Consensus 139 ~~~~~l~~~l~~s~~vil~ 157 (199)
....++++++.++.+++.+
T Consensus 4 pSL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 4 PSLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3445566666666554443
No 6
>2g40_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Deinococcus radiodurans} SCOP: c.124.1.7
Probab=13.95 E-value=99 Score=24.91 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCchhhHHHHHHHhh-CCCCCCChhHhhccCCCCCCCCHHHHHHHHHHhHHHHHH
Q 043789 6 TIPTETPELSSQPLSTRVKRLIES-GFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRM 68 (199)
Q Consensus 6 t~p~~~~~~~~~~~~s~~~~~~~~-~l~~~RPw~eF~~~~~fs~P~s~~~a~~Rv~~Nl~yF~~ 68 (199)
|||++. .+...++.|+|+.+.+ .-....||.. ..+.+.++..++...|+....+
T Consensus 15 ~~~~~~--~aRe~iL~rIr~al~~~~~~~~~p~~~-------~~~~~~~~lle~F~~~~~~~g~ 69 (224)
T 2g40_A 15 TIPSTA--EAKLEMLTTINRAIAGSRPEALPPYPV-------PAPLSRAEILHQFEDRILDYGA 69 (224)
T ss_dssp --------------------------------------------CCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCCc--cHHHHHHHHHHHhCCCCCCCCCCCccc-------ccCCChHHHHHHHHHHHHHcCC
Confidence 445443 3566899998887654 2112334321 1235678899999999876543
No 7
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=12.18 E-value=1e+02 Score=19.42 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=14.5
Q ss_pred HHhchhhHHHHHHHHHHHHHHH
Q 043789 136 FLTDVTKNIIIGLCIGTVVIAA 157 (199)
Q Consensus 136 ~~t~~~~~l~~~l~~s~~vil~ 157 (199)
.++....++++++.++.+++.+
T Consensus 11 ~mTpSL~NFl~SlvaG~vVvv~ 32 (50)
T 3bz1_X 11 TITPSLKGFFIGLLSGAVVLGL 32 (50)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777777765554
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=11.94 E-value=6.6e+02 Score=22.47 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHhHHHHHHHH
Q 043789 51 SFANFIERIQSNAAFYRMNY 70 (199)
Q Consensus 51 s~~~a~~Rv~~Nl~yF~~NY 70 (199)
+.++..+|+...+...+..|
T Consensus 120 ~~g~l~~r~~~d~~~i~~~~ 139 (582)
T 3b60_A 120 STGTLLSRITYDSEQVASSS 139 (582)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 45889999987776555543
No 9
>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH; 3.20A {Rattus norvegicus} SCOP: f.56.1.1
Probab=11.54 E-value=4.3e+02 Score=19.45 Aligned_cols=33 Identities=15% Similarity=-0.039 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 043789 52 FANFIERIQSNAAFYRMNYAVIILSIIVVSLFW 84 (199)
Q Consensus 52 ~~~a~~Rv~~Nl~yF~~NY~li~~~~~~~~ll~ 84 (199)
.++..+|+.++-...-.|+.+...++++..+..
T Consensus 64 ~~~~~~Ra~rAh~N~~E~~p~F~~~~ll~~~~g 96 (154)
T 2h8a_A 64 TDEKVERVRRAHLNDLENIVPFLGIGLLYSLSG 96 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHTTTSC
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence 456788999998888888877766666655543
No 10
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=11.11 E-value=7.2e+02 Score=22.35 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHhHHHHHHHH
Q 043789 51 SFANFIERIQSNAAFYRMNY 70 (199)
Q Consensus 51 s~~~a~~Rv~~Nl~yF~~NY 70 (199)
+.+++.+|+...+...+..+
T Consensus 132 ~~G~l~~r~~~D~~~i~~~~ 151 (598)
T 3qf4_B 132 PHGDIISRVINDVDNINNVL 151 (598)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45899999977665554443
Done!